Query 022143
Match_columns 302
No_of_seqs 165 out of 573
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f5j_A Mortality factor 4-like 100.0 5.8E-43 2E-47 307.2 11.1 139 164-302 4-146 (181)
2 2y0n_A MALE-specific lethal 3 100.0 2.1E-42 7.1E-47 310.4 12.3 140 163-302 5-182 (211)
3 3oa6_A MALE-specific lethal 3 100.0 2E-29 6.8E-34 203.0 8.0 77 46-122 14-100 (110)
4 2f5k_A MORF-related gene 15 is 100.0 7E-29 2.4E-33 198.0 9.0 77 46-122 17-93 (102)
5 3m9q_A Protein MALE-specific l 99.9 7.6E-28 2.6E-32 191.5 8.8 71 51-121 19-99 (101)
6 3m9p_A MALE-specific lethal 3 99.9 1.6E-27 5.5E-32 191.7 8.0 72 51-122 19-100 (110)
7 2lrq_A Protein MRG15, NUA4 com 99.9 1.1E-28 3.8E-33 191.3 0.0 74 48-121 9-82 (85)
8 3e9g_A Chromatin modification- 99.9 4.1E-26 1.4E-30 187.2 8.2 74 51-124 7-118 (130)
9 2k3y_A Chromatin modification- 99.9 9.1E-26 3.1E-30 188.2 7.8 71 51-121 9-117 (136)
10 2lcc_A AT-rich interactive dom 99.9 1.1E-22 3.9E-27 154.4 7.1 63 51-113 5-71 (76)
11 2ro0_A Histone acetyltransfera 99.8 3.3E-21 1.1E-25 151.2 9.7 54 51-104 23-76 (92)
12 2rnz_A Histone acetyltransfera 99.8 1E-20 3.5E-25 148.6 6.7 54 51-104 25-78 (94)
13 2eko_A Histone acetyltransfera 99.8 3E-20 1E-24 144.3 6.2 54 51-104 9-67 (87)
14 2bud_A Males-absent on the fir 99.8 5.5E-20 1.9E-24 143.4 6.0 56 54-109 17-76 (92)
15 1wgs_A MYST histone acetyltran 99.8 2.3E-19 7.9E-24 149.9 9.4 56 51-106 12-70 (133)
16 2eqm_A PHD finger protein 20-l 99.5 9.3E-14 3.2E-18 108.1 8.1 63 43-107 11-76 (88)
17 3sd4_A PHD finger protein 20; 99.3 5.4E-12 1.8E-16 93.7 8.0 57 43-101 4-61 (69)
18 3h8z_A FragIle X mental retard 98.7 3.4E-08 1.2E-12 81.6 7.2 58 47-108 56-119 (128)
19 4a4f_A SurviVal of motor neuro 98.2 2.9E-06 9.9E-11 61.6 6.7 58 46-107 3-62 (64)
20 1mhn_A SurviVal motor neuron p 97.9 1.7E-05 5.8E-10 56.5 6.0 53 51-107 3-57 (59)
21 3s6w_A Tudor domain-containing 97.8 5.8E-05 2E-09 52.6 6.6 50 52-105 2-53 (54)
22 1g5v_A SurviVal motor neuron p 97.7 7.2E-05 2.5E-09 57.8 7.2 53 51-107 10-64 (88)
23 1wjq_A KIAA1798 protein; MBT d 97.7 5.1E-05 1.8E-09 60.7 6.3 53 50-106 12-69 (107)
24 2equ_A PHD finger protein 20-l 97.7 7.6E-05 2.6E-09 55.8 6.0 53 50-108 8-61 (74)
25 2m0o_A PHD finger protein 1; t 97.6 0.00018 6E-09 53.7 6.7 51 42-94 17-68 (79)
26 3p8d_A Medulloblastoma antigen 97.5 0.00015 5.1E-09 53.2 5.0 50 51-106 6-56 (67)
27 2l8d_A Lamin-B receptor; DNA b 97.4 0.00026 8.9E-09 51.2 5.8 53 48-105 6-60 (66)
28 2biv_A SCML2 protein, sex COMB 97.4 0.00032 1.1E-08 63.7 7.4 56 46-105 166-226 (243)
29 2dig_A Lamin-B receptor; tudor 97.4 0.0005 1.7E-08 49.9 6.9 52 48-104 9-62 (68)
30 2xk0_A Polycomb protein PCL; t 97.4 0.00027 9.1E-09 51.7 5.2 50 50-106 14-64 (69)
31 3pnw_C Tudor domain-containing 97.3 0.0007 2.4E-08 50.8 6.8 54 51-108 17-72 (77)
32 4hcz_A PHD finger protein 1; p 97.2 0.00053 1.8E-08 48.6 5.2 50 51-105 3-53 (58)
33 2d9t_A Tudor domain-containing 97.2 0.00073 2.5E-08 50.7 6.2 53 51-107 9-63 (78)
34 3qii_A PHD finger protein 20; 97.2 0.00047 1.6E-08 52.8 5.1 50 51-106 21-71 (85)
35 2eqj_A Metal-response element- 97.1 0.0007 2.4E-08 49.3 5.4 42 50-93 12-54 (66)
36 2r58_A Polycomb protein SCM; M 97.1 0.0011 3.8E-08 60.8 7.7 55 48-106 140-199 (265)
37 2ldm_A Uncharacterized protein 95.8 0.0002 6.9E-09 54.4 0.0 50 51-106 6-56 (81)
38 2e5p_A Protein PHF1, PHD finge 96.8 0.002 6.8E-08 46.8 5.0 51 49-104 7-58 (68)
39 2e5q_A PHD finger protein 19; 96.8 0.00099 3.4E-08 47.7 3.4 49 51-104 7-56 (63)
40 3fdr_A Tudor and KH domain-con 96.6 0.0054 1.8E-07 47.0 7.0 53 51-108 27-81 (94)
41 2biv_A SCML2 protein, sex COMB 96.4 0.0077 2.6E-07 54.5 7.8 55 48-106 59-118 (243)
42 2r58_A Polycomb protein SCM; M 96.3 0.012 4.1E-07 53.9 8.4 54 49-106 32-90 (265)
43 1oz2_A Lethal(3)malignant brai 96.1 0.01 3.4E-07 56.1 7.3 53 50-106 147-204 (331)
44 1oz2_A Lethal(3)malignant brai 96.1 0.01 3.5E-07 56.0 7.1 53 50-106 251-308 (331)
45 3h6z_A Polycomb protein SFMBT; 96.1 0.01 3.5E-07 58.2 7.2 54 48-105 373-431 (447)
46 1pfb_A Polycomb protein; chrom 95.8 0.024 8.1E-07 39.4 6.1 35 70-104 8-42 (55)
47 3fdt_A Chromobox protein homol 95.7 0.021 7.2E-07 40.3 5.7 38 66-103 3-41 (59)
48 2diq_A Tudor and KH domain-con 95.7 0.011 3.8E-07 46.6 4.6 54 51-109 32-87 (110)
49 1wjr_A KIAA1617 protein; MBT d 95.7 0.01 3.4E-07 48.7 4.4 52 51-106 11-69 (127)
50 3f70_A Lethal(3)malignant brai 95.6 0.023 7.8E-07 55.9 7.5 53 50-106 365-422 (456)
51 3ut1_A Lethal(3)malignant brai 95.6 0.023 8E-07 53.4 7.2 52 50-105 246-302 (324)
52 2l89_A PWWP domain-containing 95.5 0.045 1.5E-06 43.3 7.7 59 51-111 5-72 (108)
53 3i91_A Chromobox protein homol 95.5 0.023 7.9E-07 39.3 5.1 38 67-104 4-42 (54)
54 1ri0_A Hepatoma-derived growth 95.4 0.019 6.6E-07 45.7 5.1 59 48-108 16-78 (110)
55 1pdq_A Polycomb protein; methy 95.4 0.035 1.2E-06 41.0 6.1 42 63-104 17-59 (72)
56 3h91_A Chromobox protein homol 95.4 0.028 9.5E-07 39.0 5.2 38 67-104 4-42 (54)
57 3lwe_A M-phase phosphoprotein 95.3 0.019 6.4E-07 41.0 4.3 39 66-104 4-43 (62)
58 3f2u_A Chromobox protein homol 95.0 0.037 1.3E-06 38.4 5.1 34 70-103 7-40 (55)
59 3mts_A Histone-lysine N-methyl 94.9 0.035 1.2E-06 39.9 4.8 35 70-104 5-39 (64)
60 3ut1_A Lethal(3)malignant brai 94.9 0.08 2.7E-06 49.7 8.6 51 51-105 143-198 (324)
61 3g7l_A Chromo domain-containin 94.8 0.049 1.7E-06 38.7 5.3 40 65-104 6-47 (61)
62 3feo_A MBT domain-containing p 94.8 0.054 1.8E-06 52.9 7.4 52 50-105 361-417 (437)
63 2kvm_A Chromobox protein homol 94.8 0.043 1.5E-06 40.5 5.2 35 70-104 18-52 (74)
64 2d9u_A Chromobox protein homol 94.8 0.05 1.7E-06 40.2 5.5 40 66-105 10-50 (74)
65 1q3l_A Heterochromatin protein 94.6 0.051 1.8E-06 39.8 5.0 39 65-103 15-54 (69)
66 2dnv_A Chromobox protein homol 94.6 0.031 1.1E-06 40.1 3.8 36 70-105 15-50 (64)
67 2k1b_A Chromobox protein homol 94.4 0.05 1.7E-06 40.3 4.7 40 65-104 20-60 (73)
68 1ap0_A Modifier protein 1; chr 94.3 0.064 2.2E-06 39.5 5.1 38 66-103 13-51 (73)
69 2hqx_A P100 CO-activator tudor 94.2 0.16 5.5E-06 45.0 8.4 53 51-108 65-118 (246)
70 4hae_A CDY-like 2, chromodomai 94.0 0.091 3.1E-06 39.6 5.4 41 64-104 21-63 (81)
71 1h3z_A Hypothetical 62.8 kDa p 93.9 0.091 3.1E-06 41.4 5.6 59 51-111 6-75 (109)
72 2rso_A Chromatin-associated pr 93.8 0.31 1.1E-05 37.4 8.4 35 70-104 35-72 (92)
73 3ntk_A Maternal protein tudor; 93.8 0.091 3.1E-06 44.4 5.7 51 51-108 47-99 (169)
74 4fu6_A PC4 and SFRS1-interacti 93.3 0.032 1.1E-06 46.7 2.1 56 51-108 22-81 (153)
75 4b9w_A TDRD1, tudor domain-con 93.1 0.19 6.5E-06 43.4 6.8 53 51-108 65-119 (201)
76 4b9x_A TDRD1, tudor domain-con 92.9 0.24 8.3E-06 43.6 7.2 53 51-108 65-119 (226)
77 2daq_A WHSC1L1 protein, isofor 92.7 0.069 2.4E-06 42.1 3.1 61 47-109 4-73 (110)
78 2wac_A CG7008-PA; unknown func 92.6 0.33 1.1E-05 41.8 7.7 53 51-109 51-105 (218)
79 2gfu_A DNA mismatch repair pro 92.6 0.19 6.5E-06 41.0 5.7 62 49-111 20-89 (134)
80 2rsn_A Chromo domain-containin 92.5 0.17 5.7E-06 37.5 4.7 40 65-104 20-61 (75)
81 3pfs_A Bromodomain and PHD fin 92.5 0.12 4.3E-06 43.7 4.5 62 48-110 33-123 (158)
82 2qqr_A JMJC domain-containing 91.5 0.6 2E-05 37.6 7.3 53 51-108 5-58 (118)
83 3qby_A Hepatoma-derived growth 91.2 0.089 3E-06 40.6 2.0 55 51-107 5-63 (94)
84 3llr_A DNA (cytosine-5)-methyl 91.0 0.15 5.3E-06 42.9 3.5 56 51-108 16-76 (154)
85 2dnt_A Chromodomain protein, Y 90.8 0.18 6E-06 37.5 3.3 35 70-104 18-53 (78)
86 3bdl_A Staphylococcal nuclease 90.8 0.57 2E-05 46.8 8.1 53 51-108 411-464 (570)
87 1khc_A DNA cytosine-5 methyltr 90.2 0.38 1.3E-05 40.1 5.3 59 48-108 8-71 (147)
88 3db3_A E3 ubiquitin-protein li 90.1 0.63 2.2E-05 39.3 6.4 41 51-91 10-68 (161)
89 3ask_A E3 ubiquitin-protein li 90.1 0.56 1.9E-05 41.8 6.5 40 51-90 2-50 (226)
90 1g6z_A CLR4 protein; transfera 89.9 0.096 3.3E-06 38.1 1.1 35 70-104 13-49 (70)
91 3mea_A SAGA-associated factor 88.7 0.45 1.5E-05 41.0 4.6 41 49-90 114-156 (180)
92 2eqk_A Tudor domain-containing 87.9 2 6.7E-05 32.6 7.2 56 49-109 19-76 (85)
93 3f70_A Lethal(3)malignant brai 87.8 0.91 3.1E-05 44.5 6.8 52 50-105 152-208 (456)
94 3dlm_A Histone-lysine N-methyl 87.2 1.4 4.6E-05 39.0 6.9 51 45-101 152-202 (213)
95 3mp6_A MBP, SGF29, maltose-bin 86.9 0.77 2.6E-05 44.8 5.8 44 44-90 450-495 (522)
96 2xdp_A Lysine-specific demethy 86.5 0.65 2.2E-05 37.7 4.1 52 51-107 6-58 (123)
97 3dlm_A Histone-lysine N-methyl 82.8 2.3 7.7E-05 37.6 6.2 51 51-104 8-59 (213)
98 3l42_A Peregrin; transcription 80.7 0.88 3E-05 37.2 2.6 59 51-110 5-92 (130)
99 3h8z_A FragIle X mental retard 80.6 3.8 0.00013 33.3 6.4 47 54-106 4-52 (128)
100 1ssf_A Transformation related 77.6 1.6 5.5E-05 36.6 3.3 37 53-92 10-49 (156)
101 3db3_A E3 ubiquitin-protein li 76.6 5.6 0.00019 33.5 6.4 55 51-106 92-156 (161)
102 2fhd_A RAD9 homolog, DNA repai 73.2 5.4 0.00018 33.2 5.3 38 55-92 9-51 (153)
103 1x3p_A Cpsrp43; chromo-2 domai 70.2 0.38 1.3E-05 33.3 -2.0 32 70-103 5-38 (54)
104 2b2y_A CHD-1, chromodomain-hel 64.6 2.1 7E-05 36.9 1.1 31 75-105 52-82 (187)
105 3mwy_W Chromo domain-containin 61.1 3.2 0.00011 42.9 2.0 27 78-104 69-95 (800)
106 2b2y_C CHD-1, chromodomain-hel 61.1 1.3 4.5E-05 35.4 -0.7 40 65-104 35-81 (115)
107 2a7y_A Hypothetical protein RV 59.6 6.7 0.00023 29.5 3.0 48 51-100 5-55 (83)
108 3ask_A E3 ubiquitin-protein li 58.1 20 0.00068 31.8 6.4 28 51-78 75-109 (226)
109 3h6z_A Polycomb protein SFMBT; 51.9 28 0.00095 33.8 6.8 49 51-105 156-209 (447)
110 2epb_A Chromodomain-helicase-D 51.8 23 0.0008 25.1 4.8 24 80-103 32-55 (68)
111 2h1e_A Chromo domain protein 1 51.6 4.6 0.00016 34.4 1.1 26 80-105 46-71 (177)
112 3feo_A MBT domain-containing p 49.8 66 0.0023 31.0 9.1 52 51-105 254-313 (437)
113 1nz9_A Transcription antitermi 47.2 22 0.00076 24.1 3.9 31 51-81 4-35 (58)
114 2g3r_A Tumor suppressor P53-bi 46.9 33 0.0011 27.5 5.3 33 54-89 7-41 (123)
115 2xdp_A Lysine-specific demethy 42.6 41 0.0014 27.0 5.3 34 53-89 66-100 (123)
116 2qqr_A JMJC domain-containing 39.4 57 0.002 25.9 5.7 34 53-89 65-99 (118)
117 2fmm_A Chromobox protein homol 34.9 66 0.0023 23.2 5.0 33 69-103 19-51 (74)
118 3nrw_A Phage integrase/site-sp 31.1 1.6E+02 0.0054 21.7 9.2 38 195-234 4-41 (117)
119 1p94_A Plasmid partition prote 29.1 90 0.0031 22.7 4.9 39 162-211 33-71 (76)
120 2jvv_A Transcription antitermi 28.9 76 0.0026 26.3 5.1 40 49-88 125-165 (181)
121 2dl5_A KIAA0769 protein; SH3 d 27.8 1.1E+02 0.0036 21.5 5.1 22 50-71 30-54 (78)
122 1y71_A Kinase-associated prote 27.0 94 0.0032 25.1 5.0 26 51-76 7-32 (130)
123 2h1e_A Chromo domain protein 1 25.3 63 0.0021 27.2 3.9 35 70-104 125-164 (177)
124 2kkp_A Phage integrase; SAM-li 23.5 2E+02 0.0069 20.4 6.7 17 195-211 4-20 (117)
125 3nnf_A CURA; non-HAEM Fe(II)/a 23.4 36 0.0012 31.8 2.2 46 51-97 237-282 (344)
126 4hg1_A Putative cytoplasmic pr 23.4 27 0.00094 29.9 1.3 28 165-192 46-73 (225)
127 2b2y_A CHD-1, chromodomain-hel 22.8 61 0.0021 27.6 3.4 34 70-103 135-171 (187)
128 2lcd_A AT-rich interactive dom 27.9 19 0.00064 28.7 0.0 35 52-89 7-41 (118)
129 2in0_A Endonuclease PI-MTUI; h 21.9 2.4E+02 0.0082 21.8 6.7 35 53-87 26-61 (139)
130 1at0_A 17-hedgehog; developmen 21.8 1.3E+02 0.0043 24.1 5.0 28 51-78 91-120 (145)
131 4e8b_A Ribosomal RNA small sub 21.1 83 0.0028 27.8 4.0 26 51-76 33-59 (251)
132 3fo8_D Tail sheath protein GP1 20.9 1.2E+02 0.004 27.4 4.9 39 47-85 23-63 (283)
133 1w4s_A Polybromo, polybromo 1 20.3 1.1E+02 0.0038 25.2 4.5 30 49-78 24-56 (174)
No 1
>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B
Probab=100.00 E-value=5.8e-43 Score=307.16 Aligned_cols=139 Identities=42% Similarity=0.672 Sum_probs=125.6
Q ss_pred ceEEEeCChhHHHHHHHHHHHHhhcCceeeCCCCCCHHHHHHHHHHhhhccCCc--chhhHHHHHHHHHHHHhhhcCccc
Q 022143 164 NFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGL--VADSTGEIVKGLRCYFDKALPIML 241 (302)
Q Consensus 164 ~~i~I~lP~~Lk~iLvdD~~~I~~~~~L~~LPa~~tV~~IL~dY~~~~~~~~~~--~~~~~~e~~~Gl~~yFn~~L~~~L 241 (302)
.+++|.||..||++|||||++|+++++|++|||++||++||++|+++....... ....++|+++||++|||++||.+|
T Consensus 4 ~~i~i~iP~~Lk~~LvdDw~~Itk~~~L~~LP~~~~V~~IL~~Y~~~~~~~~~~~~~~~~~~Ev~~Gl~~YFd~~L~~~L 83 (181)
T 2f5j_A 4 VEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQL 83 (181)
T ss_dssp --CCCCCCGGGHHHHHHHHHHHHTSCEEECSSCSSBHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHS
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHhCCCeeeCCCCCcHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHccccc
Confidence 568899999999999999999999999999999999999999999998765422 235789999999999999999999
Q ss_pred CChhhHhhHHHhhh--cCCCCCcccChHHHHHHhhhhhhhhhcCCCCHHHHHHHHHHHhhhhC
Q 022143 242 LYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLK 302 (302)
Q Consensus 242 LY~~Er~Qy~~~~~--~~~~pS~~YG~~HLLRL~vkLP~ll~~~~~d~~s~~~l~~~l~~fl~ 302 (302)
||++||+||.+++. ++.+||++||++|||||||+||+||+.++||+++++.|+.++++||+
T Consensus 84 LY~~ER~Qy~~ll~~~p~~~~S~iYGa~HLLRLfvkLPell~~t~~d~~s~~~L~~~l~~fl~ 146 (181)
T 2f5j_A 84 LYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLK 146 (181)
T ss_dssp CCGGGHHHHHHHHHHSTTCCHHHHCBHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCCHHHHcCHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999986 35799999999999999999999999999999999999999999984
No 2
>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-42 Score=310.42 Aligned_cols=140 Identities=43% Similarity=0.653 Sum_probs=125.5
Q ss_pred CceEEEeCChhHHHHHHHHHHHHhhcCceeeCCCCCCHHHHHHHHHHhhhccC--------------------------C
Q 022143 163 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD--------------------------G 216 (302)
Q Consensus 163 ~~~i~I~lP~~Lk~iLvdD~~~I~~~~~L~~LPa~~tV~~IL~dY~~~~~~~~--------------------------~ 216 (302)
+.+++|.||..||++|||||++|+++++|++|||++||++||++|+++..... .
T Consensus 5 ~~~v~i~iP~~Lk~~LvdDw~~Itk~~kLv~LPa~~~V~~IL~~Y~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 2y0n_A 5 ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAE 84 (211)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHHTSCCEECSSCSSCHHHHHHHHHHHHHHHHHSCC---------------------CT
T ss_pred CceeEEeCCHHHHHHHHHHHHHHhcCCceEeCCCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccccchh
Confidence 35689999999999999999999999999999999999999999999865211 0
Q ss_pred cchhhHHHHHHHHHHHHhhhcCcccCChhhHhhHHHhhh------------cCCCCCcccChHHHHHHhhhhhhhhhcCC
Q 022143 217 LVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA------------ADVSPSSVYGAEHLLRLFVKLPELLVHAK 284 (302)
Q Consensus 217 ~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~Er~Qy~~~~~------------~~~~pS~~YG~~HLLRL~vkLP~ll~~~~ 284 (302)
...+.++|+++||+.|||++||.+|||++||+||.+++. ++.+||++||++|||||||+||+||+.++
T Consensus 85 ~~~~~~~Ev~~GLr~YFd~~L~~~LLY~~ER~Qy~~~~~~~~~~~~~~~~~~~~~~S~iYGa~HLLRLfvkLPelL~~t~ 164 (211)
T 2y0n_A 85 KNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMS 164 (211)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHC--------CCSCCCCGGGTCCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHhhcccCCcccccCCCCHHHHcCHHHHHHHHHHhHHHHhcCC
Confidence 123457899999999999999999999999999999984 34689999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhC
Q 022143 285 IEEETLTLLQHKLVDLLK 302 (302)
Q Consensus 285 ~d~~s~~~l~~~l~~fl~ 302 (302)
|++++++.|+.++++||+
T Consensus 165 ~d~~s~~~L~~~l~~fl~ 182 (211)
T 2y0n_A 165 FSEKNLKALLKHFDLFLR 182 (211)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999999984
No 3
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=99.96 E-value=2e-29 Score=203.00 Aligned_cols=77 Identities=30% Similarity=0.600 Sum_probs=66.4
Q ss_pred CCCCCCcCCCCEEEEEe-----CCeeeeeEEEEEEeeCC-----eeEEEEEEcCCCCCcceeeecccccccCHHhhhccc
Q 022143 46 TPASCPYQVNEKVLAFF-----QSHVYEAKVIQVQYRLK-----EWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQP 115 (302)
Q Consensus 46 ~~~~~~f~vge~vl~~~-----~~~~y~AkIl~i~~~~~-----~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~~~q~ 115 (302)
.++...|++||+||||| |+++|+|||++|...++ ++.|+|||+|||++|||||+++||+++|+||+++|+
T Consensus 14 ~~~k~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drllk~neeN~~~qk 93 (110)
T 3oa6_A 14 EGMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQR 93 (110)
T ss_dssp ----CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCHHHHHHHH
T ss_pred CCCCcccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhhhcCCHHHHHHHH
Confidence 34555799999999999 56899999999986532 479999999999999999999999999999999999
Q ss_pred hhhhhhh
Q 022143 116 VFTKKRD 122 (302)
Q Consensus 116 ~L~~~~~ 122 (302)
+|.+++.
T Consensus 94 ~L~~~~~ 100 (110)
T 3oa6_A 94 KLARKAV 100 (110)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987764
No 4
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=99.95 E-value=7e-29 Score=198.03 Aligned_cols=77 Identities=35% Similarity=0.667 Sum_probs=71.4
Q ss_pred CCCCCCcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHHhhhccchhhhhhh
Q 022143 46 TPASCPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTKKRD 122 (302)
Q Consensus 46 ~~~~~~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~~~q~~L~~~~~ 122 (302)
.+|...|.+||+|+|++++.||+|+|++|+..++..+|||||.|||+||||||+++||+++|++|+++|++|.++++
T Consensus 17 ~~~~~~f~vGekVl~~~~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~k~t~en~~~q~~L~~~~~ 93 (102)
T 2f5k_A 17 QDPKPKFQEGERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQ 93 (102)
T ss_dssp -CCSCSCCTTCEEEEESSSSEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCEEEEEECCEEEEEEEEEEEEcCCCcEEEEEeCCcCCCceeeccHhhcccCCHHHHHHHHHHHHHHH
Confidence 33445799999999999999999999999999999999999999999999999999999999999999999988774
No 5
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=99.95 E-value=7.6e-28 Score=191.50 Aligned_cols=71 Identities=32% Similarity=0.569 Sum_probs=66.1
Q ss_pred CcCCCCEEEEEe-----CCeeeeeEEEEEEee-----CCeeEEEEEEcCCCCCcceeeecccccccCHHhhhccchhhhh
Q 022143 51 PYQVNEKVLAFF-----QSHVYEAKVIQVQYR-----LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTKK 120 (302)
Q Consensus 51 ~f~vge~vl~~~-----~~~~y~AkIl~i~~~-----~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~~~q~~L~~~ 120 (302)
.|++||+|+||| ++++|+|||++|... .+...|+|||.|||+||||||+++||+++|++|+++|++|.++
T Consensus 19 ~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRilk~~eeN~~~q~~L~~~ 98 (101)
T 3m9q_A 19 LFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDTEENRQLQRELAEA 98 (101)
T ss_dssp CCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGEEECCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHcccCCHHHHHHHHHHHHH
Confidence 599999999999 589999999999985 3568999999999999999999999999999999999999876
Q ss_pred h
Q 022143 121 R 121 (302)
Q Consensus 121 ~ 121 (302)
+
T Consensus 99 ~ 99 (101)
T 3m9q_A 99 A 99 (101)
T ss_dssp H
T ss_pred c
Confidence 5
No 6
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=99.94 E-value=1.6e-27 Score=191.71 Aligned_cols=72 Identities=32% Similarity=0.659 Sum_probs=66.8
Q ss_pred CcCCCCEEEEEeCC-----eeeeeEEEEEEeeCC-----eeEEEEEEcCCCCCcceeeecccccccCHHhhhccchhhhh
Q 022143 51 PYQVNEKVLAFFQS-----HVYEAKVIQVQYRLK-----EWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTKK 120 (302)
Q Consensus 51 ~f~vge~vl~~~~~-----~~y~AkIl~i~~~~~-----~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~~~q~~L~~~ 120 (302)
.|.+||+|+|++++ ++|+|||++|+..++ ...|+|||.|||+||||||+++||+++|++|+++|++|.++
T Consensus 19 ~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e~rllk~~eeN~~~q~~L~~~ 98 (110)
T 3m9p_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLARK 98 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECCCCcchhhccCHhhhhcCCHHHHHHHHHHHHH
Confidence 69999999999996 999999999998642 48999999999999999999999999999999999999887
Q ss_pred hh
Q 022143 121 RD 122 (302)
Q Consensus 121 ~~ 122 (302)
+.
T Consensus 99 a~ 100 (110)
T 3m9p_A 99 AV 100 (110)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 7
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=99.90 E-value=1.1e-28 Score=191.33 Aligned_cols=74 Identities=32% Similarity=0.667 Sum_probs=69.3
Q ss_pred CCCCcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHHhhhccchhhhhh
Q 022143 48 ASCPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTKKR 121 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~~~q~~L~~~~ 121 (302)
+...|.+||+|+|++++.+|+|+|++|+..++..+|||||.|||+||||||+++||+++|++|+++|++|.+++
T Consensus 9 ~~~~~~~Gekv~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~GwNkR~DEWV~~~Rl~k~t~en~~~q~~l~~~~ 82 (85)
T 2lrq_A 9 ANTLFVDGERVLCFHGPLIYEAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRVLKYNDDNVKRRQELARQC 82 (85)
Confidence 33469999999999999999999999999888899999999999999999999999999999999999988766
No 8
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=99.93 E-value=4.1e-26 Score=187.18 Aligned_cols=74 Identities=31% Similarity=0.618 Sum_probs=66.0
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeC--------------------------------------CeeEEEEEEcCCCC
Q 022143 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRL--------------------------------------KEWTFRVHYLGWNK 92 (302)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~~~--------------------------------------~~~~Y~VHY~Gwn~ 92 (302)
.|++||+|+|||++.+|+|||++|.... ..++|+|||+|||+
T Consensus 7 ~f~~gE~VlcfHg~~~YeAKIl~i~d~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~VHY~GWn~ 86 (130)
T 3e9g_A 7 EFALGGRCLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKCFFIHYQGWKS 86 (130)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEEETTTTEEEECC--------------CCBCCCTTCCCCTTTTTSCEEEEEETTSCG
T ss_pred cccCCCEEEEEeCCcceeeEEEEeeCCCcceeecccccccccccccccccccccccccccCchhhccCceEEEEeCCCCC
Confidence 5999999999999999999999995311 23589999999999
Q ss_pred CcceeeecccccccCHHhhhccchhhhhhhhh
Q 022143 93 SWDEWVGVHRLMKDTEANRHRQPVFTKKRDED 124 (302)
Q Consensus 93 r~DeWV~~~ri~k~t~en~~~q~~L~~~~~~~ 124 (302)
+|||||+++||+++|++|+++|++|.++++..
T Consensus 87 ~WDEWV~e~rvlk~~eeN~~lqk~L~~~a~~~ 118 (130)
T 3e9g_A 87 SWDEWVGYDRIRAYNEENIAMKKRLANEAKEA 118 (130)
T ss_dssp GGCEEEETTTEECSSHHHHHHHHHHHHHHHHH
T ss_pred ChhhccCHhhhhccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887543
No 9
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.1e-26 Score=188.24 Aligned_cols=71 Identities=32% Similarity=0.654 Sum_probs=64.4
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEe------eC-----------------------C---------eeEEEEEEcCCCC
Q 022143 51 PYQVNEKVLAFFQSHVYEAKVIQVQY------RL-----------------------K---------EWTFRVHYLGWNK 92 (302)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~------~~-----------------------~---------~~~Y~VHY~Gwn~ 92 (302)
.|++||+|+|||++++|+||||++.. .+ + +.+|||||+|||+
T Consensus 9 ~f~~gekvl~~hg~llYeAKVl~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~VHY~GWn~ 88 (136)
T 2k3y_A 9 EFALGGRVLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKSFFIHYQGWKS 88 (136)
T ss_dssp SCCTTSEEEEECSSCEEEEEEEEEEETTTTEEEECSSCCCTTCSCCCSSBCCCCSCSSCCCCHHHHTSCEEEECCTTSCG
T ss_pred ccCCCCEEEEEECCeeEEEEEEEEEeccccccccccccccccccccccccccccccccccCcccccccceEEEEeCCcCC
Confidence 59999999999999999999999985 11 1 1299999999999
Q ss_pred CcceeeecccccccCHHhhhccchhhhhh
Q 022143 93 SWDEWVGVHRLMKDTEANRHRQPVFTKKR 121 (302)
Q Consensus 93 r~DeWV~~~ri~k~t~en~~~q~~L~~~~ 121 (302)
||||||+++||+++|+||+++|++|.+++
T Consensus 89 rwDEWV~~dRil~~~eeN~~~qKeL~~ka 117 (136)
T 2k3y_A 89 SWDEWVGYDRIRAYNEENIAMKKRLANEA 117 (136)
T ss_dssp GGCEEEETTTEEESCHHHHHHHHHHHHHS
T ss_pred cceeeecHhhhhhCCHhHhHHHHHHHHHH
Confidence 99999999999999999999999998777
No 10
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=154.44 Aligned_cols=63 Identities=29% Similarity=0.549 Sum_probs=59.4
Q ss_pred CcCCCCEEEEEeC----CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHHhhhc
Q 022143 51 PYQVNEKVLAFFQ----SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHR 113 (302)
Q Consensus 51 ~f~vge~vl~~~~----~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~~~ 113 (302)
.|.+|++|+|+++ +.+|+|+|++++..++...|||||.|||+||||||+++||++.+++|...
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri~~~~~~~~~~ 71 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGLEH 71 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGEECSSCSSCCC
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhccccccchhhh
Confidence 5999999999987 69999999999999999999999999999999999999999999988764
No 11
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.3e-21 Score=151.23 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=52.0
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
.|.+|++|+|++++.+|+|+|++++..++...|||||.|||+||||||+.+||.
T Consensus 23 ~~~vG~kv~v~~~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 76 (92)
T 2ro0_A 23 DIIIKCQCWVQKNDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 76 (92)
T ss_dssp SCCTTCEEEEEETTEEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGEE
T ss_pred cccCCCEEEEEECCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHcc
Confidence 599999999999999999999999998889999999999999999999999994
No 12
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=1e-20 Score=148.58 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=51.9
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
.|.+|++|+|++++.+|+|+|++++..++...|||||.|||+||||||+.+||.
T Consensus 25 ~~~vG~kv~v~~~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlDEWV~~~RI~ 78 (94)
T 2rnz_A 25 DIIIKCQCWVQKNDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 78 (94)
T ss_dssp GCCTTEEEEEECSSCEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred cccCCCEEEEEECCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHHHcc
Confidence 499999999999999999999999998899999999999999999999999994
No 13
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3e-20 Score=144.29 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=51.2
Q ss_pred CcCCCCEEEEEe-----CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 51 PYQVNEKVLAFF-----QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 51 ~f~vge~vl~~~-----~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
.|.+|++|+|++ ++.+|+|+|++++..++..+|||||.|||+||||||+.+||.
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 67 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRRLDEWVTHERLD 67 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSCCCEEECTTTBC
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccccccCHhHcc
Confidence 599999999998 679999999999998888999999999999999999999995
No 14
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=99.79 E-value=5.5e-20 Score=143.39 Aligned_cols=56 Identities=25% Similarity=0.440 Sum_probs=50.7
Q ss_pred CCCEEEEEe-CCeeeeeEEEEEEeeC---CeeEEEEEEcCCCCCcceeeecccccccCHH
Q 022143 54 VNEKVLAFF-QSHVYEAKVIQVQYRL---KEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (302)
Q Consensus 54 vge~vl~~~-~~~~y~AkIl~i~~~~---~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~e 109 (302)
.||+|+|+| +|.+|+|+|++++... +...|||||.|||+||||||+.+||.+.+++
T Consensus 17 ~~e~vlc~~~dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~~~~ 76 (92)
T 2bud_A 17 PDKIYFIRREDGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNADD 76 (92)
T ss_dssp TTSCEEEECTTSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCHHH
T ss_pred CCCEEEEEeCCCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHhchhccc
Confidence 367999999 6899999999999865 5689999999999999999999999998665
No 15
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=99.79 E-value=2.3e-19 Score=149.89 Aligned_cols=56 Identities=34% Similarity=0.471 Sum_probs=51.2
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEee--CCeeEEEEEEcCCCCCcceeeeccccccc
Q 022143 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYR--LKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (302)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~--~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~ 106 (302)
.|.+|++|+|+++ +.||+|+|++++.. .+...|||||.|||+||||||+.+||.-.
T Consensus 12 ~~~vGe~v~~~~~d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~~~ 70 (133)
T 1wgs_A 12 TVEIGETYLCRRPDSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALT 70 (133)
T ss_dssp CCCTTSEEEEEETTTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSCCT
T ss_pred ccCCCCEEEEEeCCCCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhcccc
Confidence 5999999999997 79999999999974 47899999999999999999999999643
No 16
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=99.47 E-value=9.3e-14 Score=108.08 Aligned_cols=63 Identities=21% Similarity=0.477 Sum_probs=53.1
Q ss_pred CCCCCCCCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccccC
Q 022143 43 CPPTPASCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKDT 107 (302)
Q Consensus 43 ~~~~~~~~~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k~t 107 (302)
.||..+...|++|++|.|.+. +.+|+|+|+.+.... .+|+|||.||+++||+||..+ +|++..
T Consensus 11 ~~~~~~~~~F~vGmkLEA~D~~~~~~~a~i~~v~~~~--~~v~VHfdGW~~~yDeWv~~dS~~I~P~g 76 (88)
T 2eqm_A 11 KPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEE--GKMLVHFERWSHRYDEWIYWDSNRLRPLE 76 (88)
T ss_dssp SCCSCSSCCCCSSCEEEEECTTSCEEEEEEEEEETTT--TEEEEEESSSTTTEEEEEETTSCCEECCC
T ss_pred CCCCCCcCcCCCCCEEEEEcCCCCeeEEEEEEEeccC--CEEEEEECCCCCcccEEeeCCCCcEeccc
Confidence 455666668999999999884 688999999887643 389999999999999999987 888764
No 17
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=99.31 E-value=5.4e-12 Score=93.72 Aligned_cols=57 Identities=23% Similarity=0.501 Sum_probs=47.6
Q ss_pred CCCCCCCCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc
Q 022143 43 CPPTPASCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH 101 (302)
Q Consensus 43 ~~~~~~~~~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ 101 (302)
.||.+++..|++|.++.|.+. +.+|.|+|++|.... ..++|||.||+++||+|+..+
T Consensus 4 ~p~~~~~~~F~vGmkLEa~d~~~p~~~AtV~~v~~~~--~~~~VhfdGw~~~~D~W~~~d 61 (69)
T 3sd4_A 4 HPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEE--GKVLIHFKRWNHRYDEWFCWD 61 (69)
T ss_dssp CCCCCTTCCCSTTCEEEEECTTSCEEEEEEEEEETTT--TEEEEEETTSCGGGCEEEETT
T ss_pred CCCCCCCCCcCCCCEEEEEECCCCccccEEEEEeccC--CEEEEEeCCCCCCCCEEEcCC
Confidence 456667778999999999874 456999999996443 478999999999999999975
No 18
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=98.68 E-value=3.4e-08 Score=81.59 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=44.0
Q ss_pred CCCCCcCCCCEEEEEeCC------eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 47 PASCPYQVNEKVLAFFQS------HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 47 ~~~~~f~vge~vl~~~~~------~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
.+...|.+|++|-|++.. -||.|+|++++. ..|+|+|.||...|+|||+.+||+.-+.
T Consensus 56 ~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg----~f~~V~y~~~~~~~~EiV~~~rlR~~n~ 119 (128)
T 3h8z_A 56 DYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKG----DFYVIEYAACDATYNEIVTLERLRPVNP 119 (128)
T ss_dssp ----CCCTTCEEEEEECC---CCCEEEEEEEEEEET----TEEEEEETTC----CEEECGGGEEECCC
T ss_pred ccccCCCCCCEEEEEecCCCCCcCccEEEEEEEeeC----CEEEEEEcCCCCCcceEEehhheEeCCC
Confidence 344579999999999852 699999999983 4999999999999999999999987543
No 19
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=98.21 E-value=2.9e-06 Score=61.63 Aligned_cols=58 Identities=19% Similarity=0.361 Sum_probs=47.2
Q ss_pred CCCCCCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 022143 46 TPASCPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (302)
Q Consensus 46 ~~~~~~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t 107 (302)
.+|+..+++|+.|+|.+ +|.||.|+|+++...++ .|.|+|.+|+.+ |.|+.++|...+
T Consensus 3 ~~~~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~--~~~V~fvdYGn~--e~V~~~~Lrpl~ 62 (64)
T 4a4f_A 3 TQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENG--TAAITFAGYGNA--EVTPLLNLKPVE 62 (64)
T ss_dssp SCCSSCCCTTCEEEEECTTTSSEEEEEEEEEETTTT--EEEEEETTTTEE--EEEEGGGEECCS
T ss_pred CCcCCCCCCCCEEEEEECCCCCEEEEEEEEEcCCCC--EEEEEEEecCCE--EEEeHHHcEeCC
Confidence 34556799999999997 57999999999985433 799999999764 889988887643
No 20
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=97.94 E-value=1.7e-05 Score=56.54 Aligned_cols=53 Identities=21% Similarity=0.427 Sum_probs=44.0
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t 107 (302)
.|++|+.|+|.+ +|.||.|+|+++... ...|.|.|.+|..+ |-|+.++|+..+
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~--~~~~~V~f~DYGn~--e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFK--RETCVVVYTGYGNR--EEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETT--TTEEEEEETTTTEE--EEEEGGGCBCTT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCC--CCEEEEEEEcCCCE--EEEcHHHeeCCC
Confidence 489999999987 579999999999543 24799999999875 888888887654
No 21
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=97.78 E-value=5.8e-05 Score=52.65 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=40.1
Q ss_pred cCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 022143 52 YQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (302)
Q Consensus 52 f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k 105 (302)
|++|+.|+|.+ +|.||.|+|+++.... ..|.|+|.+|..+ |-|+.++|..
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~--~~~~V~fvDYGn~--e~v~~~~lrp 53 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSG--MTAVVKFIDYGNY--EEVLLSNIKP 53 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CC--SEEEEEETTTCCE--EEEEGGGEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCC--CEEEEEEEccCCe--EEEeHHHEEE
Confidence 78999999998 5799999999986542 4789999999875 7788777653
No 22
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.75 E-value=7.2e-05 Score=57.77 Aligned_cols=53 Identities=21% Similarity=0.411 Sum_probs=45.1
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t 107 (302)
.+++|+.|+|.| +|.||.|+|.++.... ..|.|.|.+|..+ |-|+.++|+...
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~--~~~~V~fiDYGN~--E~V~~~~Lrp~~ 64 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKR--ETCVVVYTGYGNR--EEQNLSDLLSPI 64 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTT--TEEEEEETTTCCE--EEEEGGGCBCCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCC--CEEEEEEecCCCE--EEEcHHHcccCC
Confidence 589999999998 5799999999996532 3799999999875 789999998764
No 23
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=97.73 E-value=5.1e-05 Score=60.66 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=44.9
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 022143 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (302)
Q Consensus 50 ~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k~ 106 (302)
..|++|-++.+.+. ..++.|.|.+|. +...+|||.||+.++|.|+..+ +|+..
T Consensus 12 ~~F~~GMKLEAvD~~~p~~icvATV~~v~----g~rl~v~fDGw~~~~D~W~~~dSpdIhPV 69 (107)
T 1wjq_A 12 HGFQKKMKLEVVDKRNPMFIRVATVADTD----DHRVKVHFDGWNNCYDYWIDADSPDIHPV 69 (107)
T ss_dssp SSCCSSCEEEEECTTCTTCEEEEEEEEEC----SSCEEEECSSSCGGGCEEECTTCSSCEET
T ss_pred ccCCCCCEEEEEcCCCCCcEEeEEEEEec----CCEEEEEeCCCCCcCCEEEECCCCCcccC
Confidence 36999999999985 379999999994 3489999999999999999875 66653
No 24
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.67 E-value=7.6e-05 Score=55.85 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=44.1
Q ss_pred CCcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 50 CPYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 50 ~~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
..|++|+.|++.| +|.||+|+|.+|... ..|.|.|.++|. |-|+..+|....+
T Consensus 8 ~~~kvGd~clA~wsDg~~Y~A~I~~v~~~---~~~~V~f~Dyn~---e~v~~~~lrplp~ 61 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINKE---GTFTVQFYDGVI---RCLKRMHIKAMPE 61 (74)
T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEESTT---SSEEEEETTSCE---EEECGGGEECCCG
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCC---CEEEEEEecCCe---EEecHHHCeeCCh
Confidence 3699999999998 579999999999643 379999999954 8899988877654
No 25
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=97.57 E-value=0.00018 Score=53.70 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=39.5
Q ss_pred CCCCCCCCCCcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCc
Q 022143 42 PCPPTPASCPYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSW 94 (302)
Q Consensus 42 ~~~~~~~~~~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~ 94 (302)
|++...|...|.+||-|||.| +|..|.++|++|.... ..|+|+|..=.+.|
T Consensus 17 p~~~~~p~~~f~eGeDVLarwsDGlfYLGTI~kV~~~~--e~ClV~F~D~S~~W 68 (79)
T 2m0o_A 17 PAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAR--EVCLVQFEDDSQFL 68 (79)
T ss_dssp CCCCCSCCCCCCTTCEEEBCCTTSCCCEEEEEEEETTT--TEEEEEETTSCEEE
T ss_pred CCCccCCcceeccCCEEEEEecCCCEEeEEEEEeccCC--CEEEEEEcCCCeEE
Confidence 344444556799999999988 5799999999998754 38999998766643
No 26
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.46 E-value=0.00015 Score=53.21 Aligned_cols=50 Identities=28% Similarity=0.335 Sum_probs=39.2
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccccc
Q 022143 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (302)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~ 106 (302)
.|++||+|+|.|+ +.+|+|+|.+|... ..|.|.|.+ + --+-|....|.+.
T Consensus 6 ~~~vGd~vmArW~D~~yYpA~I~si~~~---~~Y~V~F~d-G--~~etvk~~~ikp~ 56 (67)
T 3p8d_A 6 EFQINEQVLACWSDCRFYPAKVTAVNKD---GTYTVKFYD-G--VVQTVKHIHVKAF 56 (67)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTT---SEEEEEETT-S--CEEEEEGGGEEEC
T ss_pred ccccCCEEEEEcCCCCEeeEEEEEECCC---CeEEEEEeC-C--ceEEEeHHHcccC
Confidence 5999999999996 48999999999765 369999988 3 3466666666544
No 27
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.42 E-value=0.00026 Score=51.20 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=40.5
Q ss_pred CCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 022143 48 ASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k 105 (302)
|...|++||.|++.|.| ..|+|+|.+|. .....|.|-|.. --+|=+.+.+|.+
T Consensus 6 p~~~~~vgd~VmaRW~Gd~~yYparI~Si~--s~~~~Y~V~fKd---gT~e~L~~kDIkp 60 (66)
T 2l8d_A 6 PNRKYADGEVVMGRWPGSVLYYEVQVTSYD--DASHLYTVKYKD---GTELALKESDIRL 60 (66)
T ss_dssp SSSSSCSSCEEEEECTTSSCEEEEEEEEEE--TTTTEEEEEETT---SCEEEEEGGGEEC
T ss_pred CceEeecCCEEEEEcCCCccceEEEEEEec--cCCceEEEEecC---CCEEeechhcccc
Confidence 34479999999999975 79999999998 445699999987 3345555555543
No 28
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=97.39 E-value=0.00032 Score=63.65 Aligned_cols=56 Identities=18% Similarity=0.346 Sum_probs=46.4
Q ss_pred CCCCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 022143 46 TPASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (302)
Q Consensus 46 ~~~~~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k 105 (302)
.++...|++|-++.+.+. ..++.|.|.+|.. ..++|||.||..++|.|+..+ +|+.
T Consensus 166 ~~~~~~F~~GmKLEavD~~~p~~icvATV~~v~g----~rl~v~fDgw~~~~D~W~~~dSp~I~P 226 (243)
T 2biv_A 166 KPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKG----DEVHITFDGWSGAFDYWCKYDSRDIFP 226 (243)
T ss_dssp CCSSCCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred CCccccccCCCEEEEEccCCCCeEEEEEEEEecC----CEEEEEECCCCCcCCEEEeCCCCCeec
Confidence 334457999999999974 4899999999973 378999999999999999975 5554
No 29
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.38 E-value=0.0005 Score=49.87 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=39.3
Q ss_pred CCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 48 ASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
|...|++||.|++.|.| ..|+|+|.+|. .....|.|-|.. --+|=+.+.+|.
T Consensus 9 p~~~f~vgd~VmaRW~Gd~~yYparItSit--s~~~~Y~VkfKd---gT~e~L~~kDIK 62 (68)
T 2dig_A 9 PSRKFADGEVVRGRWPGSSLYYEVEILSHD--STSQLYTVKYKD---GTELELKENDIK 62 (68)
T ss_dssp CCCSSCSSCEEEEECTTTCCEEEEEEEEEE--TTTTEEEEECTT---SCEEEEETTTEE
T ss_pred CceEeecCCEEEEEccCCccceEEEEEEec--cCCceEEEEecC---CCEEEechhccc
Confidence 34479999999999975 79999999998 445699999976 234444444443
No 30
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=97.35 E-value=0.00027 Score=51.70 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=39.2
Q ss_pred CCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccccc
Q 022143 50 CPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (302)
Q Consensus 50 ~~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~ 106 (302)
..|.+||-|||.|. |..|.+.|++.. ...++|+|..=+. -||...+|.+.
T Consensus 14 ~~~~~geDVL~rw~DG~fYLGtIVd~~----~~~ClV~FeD~S~---~Wv~~kdi~kl 64 (69)
T 2xk0_A 14 VTYALQEDVFIKCNDGRFYLGTIIDQT----SDQYLIRFDDQSE---QWCEPDKLRKL 64 (69)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEEC----SSCEEEEETTCCE---EEECTTTEECS
T ss_pred cccccCCeEEEEecCCCEEEEEEEecC----CceEEEEecCCcc---eeeeHHHHHhh
Confidence 57999999999995 799999996543 3489999987666 56666666553
No 31
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=97.26 E-value=0.0007 Score=50.81 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=43.5
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
.+++|+.|+|.+ +|.||.|+|+++.... ..|.|.|.+|.. -|-|+.++|+....
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~--~~~~V~fvDYGN--~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSSG--MTAVVKFIDYGN--YEEVLLSNIKPIQT 72 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTTS--SEEEEEETTTCC--EEEEEGGGEECC--
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCC--CEEEEEEEcCCC--eEEEeHHHeEECCh
Confidence 588999999998 6899999999996432 478999999987 57788888876543
No 32
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=97.21 E-value=0.00053 Score=48.56 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=39.2
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 022143 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (302)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k 105 (302)
.|.+||.|||.|. |..|.|+|++|.... ..|+|.|..=++. ||...+|.+
T Consensus 3 ~f~~GedVLarwsDG~fYlGtI~~V~~~~--~~clV~F~D~s~~---W~~~kdi~~ 53 (58)
T 4hcz_A 3 RLWEGQDVLARWTDGLLYLGTIKKVDSAR--EVCLVQFEDDSQF---LVLWKDISP 53 (58)
T ss_dssp SCCTTCEEEEECTTSCEEEEEEEEEETTT--TEEEEEETTSCEE---EEEGGGEEE
T ss_pred ccccCCEEEEEecCCCEEeEEEEEEecCC--CEEEEEEcCCCeE---EEEhHHccc
Confidence 5999999999985 799999999997653 3899999876664 555555543
No 33
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=97.18 E-value=0.00073 Score=50.75 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=43.6
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t 107 (302)
.+.+|+.|++.+ ++.||.|+|+++... ...|.|.|.+|... |-|+.++|+...
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~--~~~~~V~fiDYGN~--e~V~~~~Lr~l~ 63 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSS--GMTAVVKFTDYGNY--EEVLLSNIKPVQ 63 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSS--SSEEEEEETTTTEE--EEEEGGGEEECC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCC--CCEEEEEEEcCCCe--EEEcHHHeEeCC
Confidence 578999999988 579999999998643 34799999999864 788888887654
No 34
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=97.18 E-value=0.00047 Score=52.77 Aligned_cols=50 Identities=28% Similarity=0.335 Sum_probs=39.7
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccccc
Q 022143 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (302)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~ 106 (302)
.|.+||+|+|.|+ +.+|+|+|.+|... ..|.|-|.+ + --+-|....|.+.
T Consensus 21 ~f~vGd~VlArW~D~~yYPAkI~sV~~~---~~YtV~F~D-G--~~etvk~~~IKp~ 71 (85)
T 3qii_A 21 EFQINEQVLACWSDCRFYPAKVTAVNKD---GTYTVKFYD-G--VVQTVKHIHVKAF 71 (85)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTT---SEEEEEETT-S--CEEEEEGGGEEEC
T ss_pred ccccCCEEEEEeCCCCEeeEEEEEECCC---CeEEEEEeC-C--CeEEecHHHcccC
Confidence 6999999999996 48999999999765 369999987 3 3466666666554
No 35
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=97.13 E-value=0.0007 Score=49.28 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=34.6
Q ss_pred CCcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCC
Q 022143 50 CPYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKS 93 (302)
Q Consensus 50 ~~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r 93 (302)
..|.+||-|+|.| .|+.|+|+|.+|....+ .|+|.|..=.++
T Consensus 12 ~~f~vGddVLA~wtDGl~Y~gtI~~V~~~~g--tC~V~F~D~s~~ 54 (66)
T 2eqj_A 12 CKFEEGQDVLARWSDGLFYLGTIKKINILKQ--SCFIIFEDSSKS 54 (66)
T ss_dssp CCSCTTCEEEEECTTSCEEEEEEEEEETTTT--EEEEEETTTEEE
T ss_pred ccccCCCEEEEEEccCcEEEeEEEEEccCCc--EEEEEEccCCEE
Confidence 3699999999998 57999999999987644 789998765553
No 36
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=97.09 E-value=0.0011 Score=60.82 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=46.1
Q ss_pred CCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 022143 48 ASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k~ 106 (302)
....|++|-++.+.+. ..++.|.|.+|.. ....|||.||...+|.|+..+ +|+..
T Consensus 140 ~~~~F~vGMKLEavD~~np~~icvATV~~v~g----~rl~v~fDGw~~~~D~W~~~~Sp~I~Pv 199 (265)
T 2r58_A 140 EENLFKVGQKLEAVDKKNPQLICCATVDAIKD----DQIHVTFDGWRGAFDYWCNYRSRDIFPA 199 (265)
T ss_dssp SSCCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEECT
T ss_pred cccccccCcEEEeccCCCCCCEEEEEEEEecC----CEEEEEeCCCCCcCCEEEECCCCCeecC
Confidence 3446999999999874 5899999999963 379999999999999999975 66654
No 37
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.83 E-value=0.0002 Score=54.41 Aligned_cols=50 Identities=30% Similarity=0.340 Sum_probs=40.7
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccccc
Q 022143 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (302)
Q Consensus 51 ~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~ 106 (302)
.|++||.|++.| ++.||+|+|.++... ..|.|.|.+ . -.|-|+.++|...
T Consensus 6 ~~kvGd~clAkwsDg~wY~A~I~~v~~~---~~y~V~F~D-G--n~E~V~~s~LrPl 56 (81)
T 2ldm_A 6 EFQINEQVLASWSDSRFYPAKVTAVNKD---GTYTVKFYD-G--VVQTVKHIHVKAF 56 (81)
Confidence 599999999988 579999999999643 279999987 3 4578888887654
No 38
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.76 E-value=0.002 Score=46.81 Aligned_cols=51 Identities=14% Similarity=0.022 Sum_probs=38.6
Q ss_pred CCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 49 SCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 49 ~~~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
...|.+||-|||.|. |..|.++|.+|.... ..++|+|..=.+ -||....|.
T Consensus 7 ~~~f~eGqdVLarWsDGlfYlGtV~kV~~~~--~~ClV~FeD~s~---~wv~~kdi~ 58 (68)
T 2e5p_A 7 GPRLWEGQDVLARWTDGLLYLGTIKKVDSAR--EVCLVQFEDDSQ---FLVLWKDIS 58 (68)
T ss_dssp CCCCCTTCEEEEECTTSSEEEEEEEEEETTT--TEEEEEETTTEE---EEEETTTEE
T ss_pred CcccccCCEEEEEecCCcEEEeEEEEEecCC--cEEEEEEccCCe---eeeeeeccc
Confidence 346999999999985 799999999998653 379999876555 455544443
No 39
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.76 E-value=0.00099 Score=47.71 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=38.2
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
.|.+|+-|||.|. |+.|.++|.+|...+ ..++|+|..=++ -||-.-.|.
T Consensus 7 ~f~eGqdVLarWsDGlfYlgtV~kV~~~~--~~ClV~FeD~s~---~wv~~kdi~ 56 (63)
T 2e5q_A 7 GLTEGQYVLCRWTDGLYYLGKIKRVSSSK--QSCLVTFEDNSK---YWVLWKDIQ 56 (63)
T ss_dssp CCCTTCEEEEECTTSCEEEEEECCCCSTT--SEEEEEETTSCE---EEEEGGGEE
T ss_pred ceecCCEEEEEecCCCEEEEEEEEEecCC--CEEEEEEccCce---eEEEeeccc
Confidence 7999999999985 799999999987653 479999977666 455544443
No 40
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=96.62 E-value=0.0054 Score=47.04 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=43.6
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
...+|+.|++.+ +|.||.|+|+++... ..+.|+|.+|... |.|+.++|+...+
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~~---~~~~V~fvDyGn~--e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLEN---GNLDLYFVDFGDN--GDCPLKDLRALRS 81 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTT---SCEEEEETTTCCE--EEECGGGCEECCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEcCCCe--EEEEHHHhhhcCH
Confidence 578999999987 789999999999532 3689999999874 8899888877543
No 41
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=96.41 E-value=0.0077 Score=54.54 Aligned_cols=55 Identities=22% Similarity=0.157 Sum_probs=45.5
Q ss_pred CCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 022143 48 ASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k~ 106 (302)
+...|++|-++.+.+. ..++.|.|+++.. ...+|||.||..++|.|+..+ +|+..
T Consensus 59 ~~~~f~vGmKLEa~D~~~~~~~~vATV~~v~g----~~l~l~~dG~d~~~DfW~~~~S~~I~Pv 118 (243)
T 2biv_A 59 PVNDFKVGMKLEARDPRNATSVCIATVIGITG----ARLRLRLDGSDNRNDFWRLVDSPDIQPV 118 (243)
T ss_dssp CCCCCCTTCEEEEEETTEEEEEEEEEEEEEET----TEEEEEETTSCSSSCEEEETTCTTEECT
T ss_pred CcccccCCCEEEEecCCCCCcEEEEEEEEEeC----CEEEEEECCCCCCCCEeecCCCCccccC
Confidence 3346999999999986 4789999999952 378999999999999999874 55544
No 42
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=96.29 E-value=0.012 Score=53.91 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=44.8
Q ss_pred CCCcCCCCEEEEEeCC---eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 022143 49 SCPYQVNEKVLAFFQS---HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (302)
Q Consensus 49 ~~~f~vge~vl~~~~~---~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k~ 106 (302)
...|++|-++.+.+.. .++.|.|++|... .++|||.||...+|-|+..+ .|+..
T Consensus 32 ~~~F~vGMKLEavDp~~~~~icvATV~~v~g~----~l~l~~DG~d~~~DfW~~~~S~~I~Pv 90 (265)
T 2r58_A 32 NNDFKIGMKLEALDPRNVTSTCIATVVGVLGS----RLRLRLDGSDSQNDFWRLVDSTEIHAI 90 (265)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEEEEEEEETT----EEEEEETTSCSSCCEEEETTCTTEECT
T ss_pred ccccccCCEeEEecCCCCCCEEEEEEEEEeCC----EEEEEeCCCCCcCCEeEeCCCCCeecc
Confidence 3469999999999863 6899999999743 89999999999999999874 55543
No 43
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=96.14 E-value=0.01 Score=56.07 Aligned_cols=53 Identities=28% Similarity=0.398 Sum_probs=44.7
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 022143 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (302)
Q Consensus 50 ~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k~ 106 (302)
..|++|-++.+.+. ..++.|.|.+|... .++|||.||...+|-|+..+ +|+..
T Consensus 147 ~~F~vGmKLEavD~~np~~icvATV~~v~g~----r~~v~~Dg~~~~~D~w~~~~S~~I~PV 204 (331)
T 1oz2_A 147 LGFQVGMKLEAVDRMNPSLVCVASVTDVVDS----RFLVHFDNWDDTYDYWCDPSSPYIHPV 204 (331)
T ss_dssp TTCCTTCEEEEECTTSTTCEEEEEEEEEETT----EEEEEETTSCGGGCEEECTTCTTEECT
T ss_pred cccccccEEEeccCCCCCcEEEEEEEEeeCC----EEEEEeCCCCCccCEEEecCCCCccCC
Confidence 36999999999984 58999999998743 68999999999999999874 55543
No 44
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=96.10 E-value=0.01 Score=56.01 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=44.8
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 022143 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (302)
Q Consensus 50 ~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k~ 106 (302)
..|++|-++.+.+. ..++.|.|.+|.. ....|||.||...+|.|+..+ .|+..
T Consensus 251 ~~F~~gmKLEavD~~~p~~ic~AtV~~v~~----~~l~v~fDgw~~~~d~w~~~dS~~I~Pv 308 (331)
T 1oz2_A 251 HSFLVNMKLEAVDRRNPALIRVASVEDVED----HRIKIHFDGWSHGYDFWIDADHPDIHPA 308 (331)
T ss_dssp CCCCTTCEEEEECSSSTTCEEEEEEEEECS----SEEEEEETTBCGGGCEEEETTCTTEECT
T ss_pred cccccCceeEeecccCCCcEEeeEEEEEcC----CEEEEEeCCCCCcCCEEEECCCCCcccc
Confidence 36999999999984 4799999999963 369999999999999999875 66653
No 45
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=96.06 E-value=0.01 Score=58.17 Aligned_cols=54 Identities=20% Similarity=0.397 Sum_probs=45.2
Q ss_pred CCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 022143 48 ASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k 105 (302)
+...|++|-++.+.+. .+++.|.|.+|.. ..-.|||.||...+|.|+..+ .|+.
T Consensus 373 ~~~~F~~gmkLEAvD~~np~~icvATV~~v~~----~~~~i~fDgw~~~~d~w~~~~S~dI~P 431 (447)
T 3h6z_A 373 PDHGFEVGMSLECADLMDPRLVCVATVARVVG----RLLKVHFDGWTDEYDQWLDCESADIYP 431 (447)
T ss_dssp CCCCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEECTTSCGGGCEEEETTCTTEEC
T ss_pred CCCccccCCEEEeecCCCCCcEEEEEEeEecC----CEEEEEeCCCCCcCCEEEecCCCCccc
Confidence 3346999999999874 6899999999984 378999999999999999875 5554
No 46
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=95.78 E-value=0.024 Score=39.44 Aligned_cols=35 Identities=26% Similarity=0.640 Sum_probs=32.5
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 70 kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
+|++.+..+|...|+|.+.||....+-|.|.+.|.
T Consensus 8 ~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~ 42 (55)
T 1pfb_A 8 KIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL 42 (55)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCC
Confidence 78888888899999999999999999999999885
No 47
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=95.71 E-value=0.021 Score=40.34 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=34.0
Q ss_pred eeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeecccc
Q 022143 66 VYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (302)
Q Consensus 66 ~y~A-kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri 103 (302)
-|+. +|++.+..+|...|+|+..||....+-|.|++.|
T Consensus 3 ey~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl 41 (59)
T 3fdt_A 3 EYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL 41 (59)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred eEEEEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC
Confidence 3444 7999888899999999999999999999999988
No 48
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=95.66 E-value=0.011 Score=46.62 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=44.8
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHH
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~e 109 (302)
.+.+|+.|++.+ ++.||.|+|+++... ..+.|+|..|... |.|+.++|+...++
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~---~~~~V~fvDyGn~--e~v~~~~Lr~l~~~ 87 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN---GNLDLYFVDFGDN--GDCPLKDLRALRSD 87 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSS---SCEEEEETTTCCE--EEECGGGCEECCHH
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEeCCCe--EEEehHHhhcCcHH
Confidence 478999999987 579999999998642 3789999999975 88999999877653
No 49
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=95.66 E-value=0.01 Score=48.67 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=43.9
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCC--Ccceeeecc--ccccc
Q 022143 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNK--SWDEWVGVH--RLMKD 106 (302)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~--r~DeWV~~~--ri~k~ 106 (302)
.|++|-++.+.+. ..++-|.|+++.. ...+|||.||.. ++|-|+..+ +|+..
T Consensus 11 ~f~~GmKLEa~D~~~p~~~~vAtV~~v~g----~rl~l~~dG~~~~~~~D~W~~~~s~~I~Pv 69 (127)
T 1wjr_A 11 LITVGSLIELQDSQNPFQYWIVSVIENVG----GRLRLRYVGLEDTESYDQWLFYLDYRLRPV 69 (127)
T ss_dssp HCCTTCEEEEECSSCSSCEEEEECCCEET----TEEEECBTTCSSCCSSCEEEETTCSSCBCT
T ss_pred hccCCCEeEEecCCCCCcEEEEEEeeeeC----CEEEEEecCCCCCCCCCEeEeCCCCCcccc
Confidence 5999999999874 4789999999874 489999999999 899999874 66554
No 50
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=95.61 E-value=0.023 Score=55.86 Aligned_cols=53 Identities=23% Similarity=0.426 Sum_probs=44.4
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 022143 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (302)
Q Consensus 50 ~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k~ 106 (302)
..|++|-++.+.+. ..++-|.|.+|.. ....|||.||...+|+|+..+ .|+..
T Consensus 365 ~~F~~GMKLEAvD~~np~~icvATV~~v~~----~~l~i~fDgw~~~~d~w~~~~S~~I~Pv 422 (456)
T 3f70_A 365 HGFKVGMKLEAVDLMEPRLICVATVKRVVH----RLLSIHFDGWDSEYDQWVDCESPDIYPV 422 (456)
T ss_dssp CCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEECT
T ss_pred cccccCCEEEeecCCCCCcEEEEEEEEecC----CEEEEEeCCCCCCCCeEeecCCCCcccc
Confidence 35999999999984 5899999999883 278999999999999999874 56543
No 51
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=95.59 E-value=0.023 Score=53.43 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=44.1
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 022143 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (302)
Q Consensus 50 ~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k 105 (302)
..|++|-++.+.+. .+++.|.|.+|.. ..-.|||.||...+|.|+..+ .|+.
T Consensus 246 ~~F~~gmkLEAvD~~~p~licvATV~~v~g----~~l~v~fDgw~~~~d~w~~~~S~dI~P 302 (324)
T 3ut1_A 246 HGFQKKMKLEVVDKRNPMFIRVATVADTDD----HRVKVHFDGWNNCYDYWIDADSPDIHP 302 (324)
T ss_dssp CCCCTTCEEEEECSSSTTCEEEEEEEEECS----SEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred ccCCCCCeeeccCCCCCCceeEEEEEEecC----CEEEEEeCCCCCCCCEEEeCCCCCeec
Confidence 36999999999874 5899999999953 378999999999999999975 5554
No 52
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=95.54 E-value=0.045 Score=43.31 Aligned_cols=59 Identities=8% Similarity=0.144 Sum_probs=47.3
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee--------CCeeEEEEEEcCCCCCcceeeecccccccCHHhh
Q 022143 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR--------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (302)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~--------~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~ 111 (302)
.|.+|+.|++.-+| -||.|+|++-..- .+...|.|.|-|= ..| -||+..+|..++++..
T Consensus 5 ~~~~GdlVwaK~~gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~-~~~-aWv~~~~l~p~~~~~~ 72 (108)
T 2l89_A 5 RLNFGDRILVKAPGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPD-FNF-AWVKRNSVKPLLDSEI 72 (108)
T ss_dssp CCCTTEEEEEECSSSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTT-TEE-EEECGGGEEECCHHHH
T ss_pred cccCCCEEEEEeCCcCCCceEecCcccCcHHHhhccCCCCeEEEEECCC-CCE-EEEchhhceeCCHHHH
Confidence 69999999998887 7999999986542 2356999999983 333 6999999999997644
No 53
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=95.48 E-value=0.023 Score=39.33 Aligned_cols=38 Identities=16% Similarity=0.567 Sum_probs=34.0
Q ss_pred eee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 67 YEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 67 y~A-kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
|++ +|++.+..+|...|+|+..||....+-|.|++.|.
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 42 (54)
T 3i91_A 4 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL 42 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC
T ss_pred EEEEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCC
Confidence 444 78888888899999999999999999999999886
No 54
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=95.42 E-value=0.019 Score=45.67 Aligned_cols=59 Identities=15% Similarity=0.286 Sum_probs=47.3
Q ss_pred CCCCcCCCCEEEEEeCC-eeeeeEEEEEEee---CCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 48 ASCPYQVNEKVLAFFQS-HVYEAKVIQVQYR---LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~~-~~y~AkIl~i~~~---~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
.+..|.+||.|++.-+| -||.|+|+++... .....|.|.|-|-+.+. ||+.++|+.+.+
T Consensus 16 ~~~~~~~GdlVwaK~kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~~a--wv~~~~l~pf~~ 78 (110)
T 1ri0_A 16 RQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETA--FLGPKDLFPYEE 78 (110)
T ss_dssp CSSSCCTTCEEEEEETTEEEEEEEEECCCSSSSCCCSSCEEEEETTTTEEE--EECSTTEECHHH
T ss_pred ccCCCCCCCEEEEEeCCCCCCCEEEecccHhhcCCCCCEEEEEEecCCCEE--EECHHHccchhh
Confidence 34479999999998888 7999999975431 23458999999987665 999999999864
No 55
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=95.40 E-value=0.035 Score=41.04 Aligned_cols=42 Identities=29% Similarity=0.619 Sum_probs=35.9
Q ss_pred CCeeeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 63 QSHVYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 63 ~~~~y~A-kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
+...|+. +|++.+..+|...|+|.+.||....+-|.|++.|.
T Consensus 17 ~~~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL~ 59 (72)
T 1pdq_A 17 VDLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL 59 (72)
T ss_dssp -CEEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred CCceEEEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHCC
Confidence 3456665 78888888899999999999999999999998875
No 56
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=95.36 E-value=0.028 Score=38.97 Aligned_cols=38 Identities=16% Similarity=0.526 Sum_probs=34.1
Q ss_pred eee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 67 YEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 67 y~A-kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
|+. +|++.+..+|...|+|+..||....+-|.|++.|.
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 42 (54)
T 3h91_A 4 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL 42 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC
T ss_pred eEEEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCC
Confidence 444 78888888999999999999999999999999886
No 57
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=95.30 E-value=0.019 Score=41.02 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=33.9
Q ss_pred eeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 66 VYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 66 ~y~A-kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
.|+. +|++.+..+|...|+|+..||....+-|.|++.|.
T Consensus 4 ~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 43 (62)
T 3lwe_A 4 VFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLE 43 (62)
T ss_dssp SCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHHT
T ss_pred eEEEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHhh
Confidence 3444 78888888899999999999999999999998873
No 58
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=95.04 E-value=0.037 Score=38.44 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=31.9
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeecccc
Q 022143 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (302)
Q Consensus 70 kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri 103 (302)
+|++.+..+|...|+|+..||....+-|.|++.|
T Consensus 7 ~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl 40 (55)
T 3f2u_A 7 KVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL 40 (55)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC
T ss_pred EEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC
Confidence 7888888889999999999999999999999988
No 59
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=94.91 E-value=0.035 Score=39.95 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=31.8
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 70 kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
+|++.+..+|...|+|.+.||....+-|.|++.|.
T Consensus 5 ~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 5 YLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp EEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCC
Confidence 67888888889999999999999999999999984
No 60
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=94.90 E-value=0.08 Score=49.74 Aligned_cols=51 Identities=25% Similarity=0.467 Sum_probs=43.3
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 022143 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (302)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k 105 (302)
.|++|-++.+.+. ..++.|.|.+|... .+.|||.||...+|-|+..+ .|+.
T Consensus 143 ~F~vGMKLEavDp~~p~~icvATV~~V~g~----~l~v~~Dg~~~~~d~w~~~~Sp~I~P 198 (324)
T 3ut1_A 143 GFRVGMKLEAVDKKNPSFICVATVTDMVDN----RFLVHFDNWDESYDYWCEASSPHIHP 198 (324)
T ss_dssp SCCTTCEEEEEETTEEEEEEEEEEEEEETT----EEEEEETTSCGGGCEEECTTCTTEEC
T ss_pred ccccCCEEEEecCCCCCcEEEEEEEEEECC----EEEEEECCCCCcCCEEEECCCCCccc
Confidence 6999999999985 47899999998732 69999999999999999875 5554
No 61
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=94.82 E-value=0.049 Score=38.71 Aligned_cols=40 Identities=15% Similarity=0.381 Sum_probs=34.1
Q ss_pred eeeee-EEEEEEeeCCee-EEEEEEcCCCCCcceeeeccccc
Q 022143 65 HVYEA-KVIQVQYRLKEW-TFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 65 ~~y~A-kIl~i~~~~~~~-~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
..|++ +|++.+..+|.. .|+|+..||....+-|.|++.|.
T Consensus 6 ~ey~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl~ 47 (61)
T 3g7l_A 6 DVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF 47 (61)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGGT
T ss_pred cEEEEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHCC
Confidence 34555 788888888877 99999999999999999999883
No 62
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=94.81 E-value=0.054 Score=52.93 Aligned_cols=52 Identities=25% Similarity=0.495 Sum_probs=44.3
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 022143 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (302)
Q Consensus 50 ~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k 105 (302)
..|++|-++.+.+. ..++.|.|.+|.. ....|||.||...+|.|+..+ .|+.
T Consensus 361 ~~F~~GMKLEAvD~~np~~IcvATV~~v~~----~~l~v~fDgw~~~~d~w~~~~S~~I~P 417 (437)
T 3feo_A 361 HGFRVGMKLEAVDLMEPRLICVATVTRIIH----RLLRIHFDGWEEEYDQWVDCESPDLYP 417 (437)
T ss_dssp CCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred ccCccCCEEEeecCCCCCcEEEEEEeEEcC----CEEEEEECCCCCcCCeEEeCCCCCccc
Confidence 35999999999974 5899999999973 388999999999999998875 5554
No 63
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=94.81 E-value=0.043 Score=40.49 Aligned_cols=35 Identities=14% Similarity=0.470 Sum_probs=32.0
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 70 kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
+|++.+..+|...|+|.+.||....+-|.|.+.|.
T Consensus 18 ~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~ 52 (74)
T 2kvm_A 18 SIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL 52 (74)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCS
T ss_pred EEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCC
Confidence 78888888889999999999999999999999886
No 64
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.79 E-value=0.05 Score=40.16 Aligned_cols=40 Identities=18% Similarity=0.532 Sum_probs=34.2
Q ss_pred eeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 022143 66 VYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (302)
Q Consensus 66 ~y~A-kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k 105 (302)
.|+. +|++.+..+|...|+|.+.||....+-|.+++.|..
T Consensus 10 ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~ 50 (74)
T 2d9u_A 10 VFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILD 50 (74)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCCC
T ss_pred cEEEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHHCCC
Confidence 3444 788888888899999999999999999999998864
No 65
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=94.56 E-value=0.051 Score=39.76 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=34.1
Q ss_pred eeeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeecccc
Q 022143 65 HVYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (302)
Q Consensus 65 ~~y~A-kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri 103 (302)
..|+. +|++.+..+|...|+|.+.||....+-|.|++.|
T Consensus 15 ~ey~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL 54 (69)
T 1q3l_A 15 EEYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL 54 (69)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred CcEEEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC
Confidence 45555 7888888889999999999999999999999887
No 66
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=94.56 E-value=0.031 Score=40.10 Aligned_cols=36 Identities=14% Similarity=0.534 Sum_probs=31.4
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 022143 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (302)
Q Consensus 70 kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k 105 (302)
+|++.+..+|...|+|++.||....+-|.|++.|..
T Consensus 15 ~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~ 50 (64)
T 2dnv_A 15 ALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD 50 (64)
T ss_dssp CEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCCC
T ss_pred EEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCCC
Confidence 677777777889999999999999999999998864
No 67
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=94.44 E-value=0.05 Score=40.27 Aligned_cols=40 Identities=15% Similarity=0.493 Sum_probs=34.4
Q ss_pred eeeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 65 HVYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 65 ~~y~A-kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
..|+. +|++.+..+|...|+|.+.||....+-|.|++.|.
T Consensus 20 ~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~ 60 (73)
T 2k1b_A 20 QVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL 60 (73)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCS
T ss_pred ceEEEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCC
Confidence 44544 78888888889999999999999999999999885
No 68
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=94.34 E-value=0.064 Score=39.46 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=33.4
Q ss_pred eeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeecccc
Q 022143 66 VYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (302)
Q Consensus 66 ~y~A-kIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri 103 (302)
.|+. +|++.+..+|...|+|.+.||....+-|.|++.|
T Consensus 13 ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL 51 (73)
T 1ap0_A 13 EYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL 51 (73)
T ss_dssp CCEEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC
T ss_pred eEEEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC
Confidence 3444 7888888888999999999999999999999988
No 69
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=94.17 E-value=0.16 Score=45.02 Aligned_cols=53 Identities=23% Similarity=0.269 Sum_probs=44.0
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 51 ~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
...+|+.|++.+ +|.||.|+|+++... ..+.|+|..|... ++|+.++|+...+
T Consensus 65 ~~~~G~~c~a~~~d~~wyRa~V~~~~~~---~~~~V~~vDyGn~--~~v~~~~lr~l~~ 118 (246)
T 2hqx_A 65 APRRGEFCIAKFVDGEWYRARVEKVESP---AKIHVFYIDYGNR--EVLPSTRLGTLSP 118 (246)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEEEET---TEEEEEETTTCCE--EEECGGGEECCCG
T ss_pred CCCCCCEEEEEcCCCCEEEEEEEEEcCC---CeEEEEEEeCCCe--EEEeHHHhhcCCH
Confidence 467999999988 689999999999653 2789999999863 7899998887653
No 70
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=93.99 E-value=0.091 Score=39.56 Aligned_cols=41 Identities=20% Similarity=0.652 Sum_probs=34.2
Q ss_pred Ceeeee-EEEEEEe-eCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 64 SHVYEA-KVIQVQY-RLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 64 ~~~y~A-kIl~i~~-~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
+..|+. +|++.+. .+|...|+|.+.||....|-|.|++.|.
T Consensus 21 ~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~ 63 (81)
T 4hae_A 21 GDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL 63 (81)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEE
T ss_pred CCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhh
Confidence 567776 7888776 4567899999999999999999998774
No 71
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=93.92 E-value=0.091 Score=41.40 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=47.0
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEE---E-----ee--CCeeEEEEEEcCCCCCcceeeecccccccCHHhh
Q 022143 51 PYQVNEKVLAFFQS-HVYEAKVIQV---Q-----YR--LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (302)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i---~-----~~--~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~ 111 (302)
.|.+|+.|++.-+| -||.|+|++- . .. .+...|.|.|-|=+ .| -||+..+|+.+++++.
T Consensus 6 ~~~~GdlVwaK~~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~-~~-aWv~~~~l~p~~~~~~ 75 (109)
T 1h3z_A 6 NYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNK-EY-LWTGSDSLTPLTSEAI 75 (109)
T ss_dssp CCCTTCEEEEEETTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTT-CC-EEEEGGGEEECCHHHH
T ss_pred cCCCCCEEEEEeCCcCCCCEEEcccHHHhHHhhccCCCCCCCEEEEEEcCCC-CE-EEECHHHeeeCCchHH
Confidence 59999999998887 6999999941 1 01 12568999999977 45 8999999999998754
No 72
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=93.85 E-value=0.31 Score=37.43 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=28.2
Q ss_pred EEEEEEe--eCCeeEEEEEEcCCCC-Ccceeeeccccc
Q 022143 70 KVIQVQY--RLKEWTFRVHYLGWNK-SWDEWVGVHRLM 104 (302)
Q Consensus 70 kIl~i~~--~~~~~~Y~VHY~Gwn~-r~DeWV~~~ri~ 104 (302)
+|++.+. .+|...|+|.+.||.. .++-|.|+..|.
T Consensus 35 ~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~ 72 (92)
T 2rso_A 35 KVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCS 72 (92)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGG
T ss_pred EEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHh
Confidence 6776665 3567899999999984 888999998873
No 73
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=93.78 E-value=0.091 Score=44.37 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=39.5
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
...+|+.|++.+ +|.||.|+|+++...+ .+.|+|.+|... +.+ ++|....+
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~---~~~V~fvDyGn~--~~v--~~lr~l~~ 99 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG---KCEVHFIDFGNN--AVT--QQFRQLPE 99 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTT---CEEEEETTTTEE--EEE--SCEECCCH
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCC---EEEEEEEecCCe--EEh--hhhhccCH
Confidence 477999999987 5899999999986532 799999999875 233 66665543
No 74
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=93.34 E-value=0.032 Score=46.68 Aligned_cols=56 Identities=13% Similarity=0.284 Sum_probs=44.6
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee---CCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR---LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~---~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
.|.+|+.|++.-+| -|+.|+|+..... .....|.|.|-|-+.+ -||...+|+.+++
T Consensus 22 ~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~~~--awv~~~~l~~f~e 81 (153)
T 4fu6_A 22 DFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHET--AFLGPKDIFPYSE 81 (153)
T ss_dssp GCCTTCEEEECCTTSCCEEEEECCCC---CCCCTTCEEEEETTTCCE--EEECGGGEEEHHH
T ss_pred CCCCCCEEEEeCCCCCCCCEEEeEchhhccCCCCCEEEEEecCCCCe--EEeCHHHccChHh
Confidence 59999999999887 7999999876432 2234899999997654 5999999999864
No 75
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=93.13 E-value=0.19 Score=43.41 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=42.6
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
..++|+.|.|.+ .|.||.|+|+++...+ .+.|+|..|... ++|+.++|+...+
T Consensus 65 ~~~~G~~c~a~~~~d~~wyRa~V~~~~~~~---~~~V~~vDyG~~--~~v~~~~l~~l~~ 119 (201)
T 4b9w_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPSG---NVKVHFVDYGNV--EEVTTDQLQAILP 119 (201)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTTS---CEEEEETTTCCE--EEECGGGEEECCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCC---eEEEEEEccCCE--EEEEHHHhccChH
Confidence 457999999987 4799999999985432 588999999874 7899998877644
No 76
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=92.85 E-value=0.24 Score=43.57 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=42.8
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
...+|+.|.|.+ +|.||.|+|+++... ..+.|+|..|... ++|+.++|+...+
T Consensus 65 ~~~~G~~c~a~~~~d~~WyRa~V~~~~~~---~~~~V~~vDyGn~--~~v~~~~l~~l~~ 119 (226)
T 4b9x_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPS---GNVKVHFVDYGNV--EEVTTDQLQAILP 119 (226)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSS---SEEEEECTTTCCE--EEEEGGGEECCCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEecCCE--EEEEHHHhccChH
Confidence 357899999987 479999999998643 2689999999874 7899998877654
No 77
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=92.71 E-value=0.069 Score=42.08 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=45.6
Q ss_pred CCCCCcCCCCEEEEEeCC-eeeeeEEEEEEee--------CCeeEEEEEEcCCCCCcceeeecccccccCHH
Q 022143 47 PASCPYQVNEKVLAFFQS-HVYEAKVIQVQYR--------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (302)
Q Consensus 47 ~~~~~f~vge~vl~~~~~-~~y~AkIl~i~~~--------~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~e 109 (302)
..|-.|.+|+.|++.-+| -||.|+|++.... .....|.|+|-|=+. | -||+.++|+.+++.
T Consensus 4 ~~g~~~~~GdlVwaK~~g~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~-~-awv~~~~l~p~~~~ 73 (110)
T 2daq_A 4 GSSGKLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHD-Y-YWVHQGRVFPYVEG 73 (110)
T ss_dssp SCCCSCCSSEEEEEECSSSCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTE-E-EEECSSSSEECCSS
T ss_pred CCCCCCCCCCEEEEEeCCCCCCceeeCChhhCCHHHhhccCCCCcEEEEEecCCC-E-EEEcHHHCcCcchh
Confidence 345578999999998877 7999999987421 123479999999332 2 49999999888753
No 78
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=92.63 E-value=0.33 Score=41.75 Aligned_cols=53 Identities=28% Similarity=0.281 Sum_probs=42.9
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHH
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~e 109 (302)
...+|+.|++.+ +|.||.|+|+++.. ..+.|+|..|... +.|+.++|....++
T Consensus 51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~----~~~~V~~vDyG~~--~~v~~~~l~~l~~~ 105 (218)
T 2wac_A 51 TPKRGDLVAAQFTLDNQWYRAKVERVQG----SNATVLYIDYGNK--ETLPTNRLAALPPA 105 (218)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEEET----TEEEEEETTTCCE--EEEEGGGEEECCGG
T ss_pred cCCcCCEEEEEECCCCeEEEEEEEEecC----CeEEEEEEecCCe--EEEchHHcccCChh
Confidence 467999999987 47999999999864 4789999998863 67888888776543
No 79
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=92.59 E-value=0.19 Score=41.02 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=46.3
Q ss_pred CCCcCCCCEEEEEeCC-eeeeeEEEEEEee-------CCeeEEEEEEcCCCCCcceeeecccccccCHHhh
Q 022143 49 SCPYQVNEKVLAFFQS-HVYEAKVIQVQYR-------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (302)
Q Consensus 49 ~~~f~vge~vl~~~~~-~~y~AkIl~i~~~-------~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~en~ 111 (302)
+..|.+|+.|++.-+| -||.|+|+..... .....|.|.|-|=...| -||+..+|+.+++...
T Consensus 20 ~~~~~~GdlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~-aWv~~~~l~pf~~~~~ 89 (134)
T 2gfu_A 20 SSDFSPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTR-GWVSKRLLKPYTGSKS 89 (134)
T ss_dssp SCCCCTTSEEEECCTTSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEE-EEECGGGEEESCCTTS
T ss_pred CCCCCCCCEEEEeecCCCCCCeeecchhhhhhhhhccCCCceEEEEECCCCCce-EEECHHHcccCcchhH
Confidence 3469999999998877 6999999986321 12358999999853222 4999999999876443
No 80
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=92.47 E-value=0.17 Score=37.49 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=32.3
Q ss_pred eeeee-EEEEEEee-CCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 65 HVYEA-KVIQVQYR-LKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 65 ~~y~A-kIl~i~~~-~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
..|+. +|++.+.. +|...|+|++.||....+-|.|++.|.
T Consensus 20 e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 61 (75)
T 2rsn_A 20 DVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF 61 (75)
T ss_dssp GCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGT
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHcc
Confidence 34555 67777664 467899999999999999999998874
No 81
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=92.45 E-value=0.12 Score=43.66 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=48.1
Q ss_pred CCCCcCCCCEEEEEeCC-eeeeeEEEEEEee----------------------------CCeeEEEEEEcCCCCCcceee
Q 022143 48 ASCPYQVNEKVLAFFQS-HVYEAKVIQVQYR----------------------------LKEWTFRVHYLGWNKSWDEWV 98 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~~-~~y~AkIl~i~~~----------------------------~~~~~Y~VHY~Gwn~r~DeWV 98 (302)
+.+.|+.|+.|++.-.| -||.|.|++-... .+...|.|.|-|=...| -||
T Consensus 33 ~~~~~~pgdlVWAK~~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~-aWV 111 (158)
T 3pfs_A 33 DRGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTW-QWL 111 (158)
T ss_dssp CCSCCCTTCEEEEECTTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCE-EEE
T ss_pred cCCCCCCCCEEEEecCCCCCCCEEEcCCCCccccccccccccCCChHHHHhhcccccccCCCCEEEEEEcCCCCce-Eee
Confidence 44569999999999877 7999999883331 13568999999944455 599
Q ss_pred ecccccccCHHh
Q 022143 99 GVHRLMKDTEAN 110 (302)
Q Consensus 99 ~~~ri~k~t~en 110 (302)
+.++|..++.+.
T Consensus 112 ~~~~L~Pl~~d~ 123 (158)
T 3pfs_A 112 PRDKVLPLGVED 123 (158)
T ss_dssp EGGGEEECSSCH
T ss_pred ccccEeecCCch
Confidence 999999998655
No 82
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=91.46 E-value=0.6 Score=37.61 Aligned_cols=53 Identities=11% Similarity=0.263 Sum_probs=42.6
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
.+.+|++|.|.|. |..|.|+|+++... ..|.|+|. ..+|=.+..+..|....-
T Consensus 5 ~v~vGq~V~akh~ngryy~~~V~~~~~~---~~y~V~F~--DgS~s~dl~peDIvs~dc 58 (118)
T 2qqr_A 5 SITAGQKVISKHKNGRFYQCEVVRLTTE---TFYEVNFD--DGSFSDNLYPEDIVSQDC 58 (118)
T ss_dssp CCCTTCEEEEECTTSSEEEEEEEEEEEE---EEEEEEET--TSCEEEEECGGGBCSSCH
T ss_pred eeccCCEEEEECCCCCEEeEEEEEEeeE---EEEEEEcC--CCCccCCCCHhhcccccc
Confidence 4789999999996 68999999999764 58999997 555667788877776543
No 83
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=91.16 E-value=0.089 Score=40.57 Aligned_cols=55 Identities=11% Similarity=0.281 Sum_probs=44.5
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee---CCeeEEEEEEcCCCCCcceeeecccccccC
Q 022143 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR---LKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (302)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~---~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t 107 (302)
.|.+||.|++.-+| -|+.|+|+++... ....+|.|.|-|-+.+ -||..++|+.+.
T Consensus 5 ~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~--awv~~~~l~pf~ 63 (94)
T 3qby_A 5 AFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHET--AFLGPKDLFPYD 63 (94)
T ss_dssp CCCTTCEEEECCTTSCCEEEEECCCCTTSBCCCTTCEEEEETTTCCE--EEECGGGEEEHH
T ss_pred cCccCCEEEEecCCCCCCCEEEeecccccccCCCCEEEEEEEcCCCc--ceEchhHeeEHH
Confidence 59999999998877 6899999987421 1235899999997654 499999999986
No 84
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=91.00 E-value=0.15 Score=42.89 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=46.1
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee----CCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR----LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~----~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
.|.+|+.|++.-+| -|+.|+|++.... ....+|.|.|-|-+.+ -||..++|+.+++
T Consensus 16 ~f~~GDLVWaKvkG~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~~--awv~~~~L~pf~e 76 (154)
T 3llr_A 16 GFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKF--SVVCVEKLMPLSS 76 (154)
T ss_dssp CCCTTCEEEECCTTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTCCE--EEEEGGGEEEGGG
T ss_pred CCccCCEEEEecCCCCCCCEEEecccccccccCCCCEEEEEEeCCCCE--EEEcHHHCcchhh
Confidence 69999999998777 7999999987521 1234899999999965 5999999999875
No 85
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=90.83 E-value=0.18 Score=37.51 Aligned_cols=35 Identities=14% Similarity=0.404 Sum_probs=28.6
Q ss_pred EEEEEEe-eCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 70 KVIQVQY-RLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 70 kIl~i~~-~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
+|++.+. .+|...|+|++.||....+-|.+++.|.
T Consensus 18 ~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~ 53 (78)
T 2dnt_A 18 RIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLV 53 (78)
T ss_dssp CEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCT
T ss_pred EEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHH
Confidence 4555554 3567899999999999999999999885
No 86
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=90.77 E-value=0.57 Score=46.82 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=44.7
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 51 ~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
...+|+.|++.+ +|.||.|+|+++.. ...+.|+|..|.. -++|+.++|+...+
T Consensus 411 ~~~~G~~c~a~~~d~~wyRa~I~~v~~---~~~~~V~fvDyGn--~e~v~~~~Lr~l~~ 464 (570)
T 3bdl_A 411 APRRGEFCIAKFVDGEWYRARVEKVES---PAKIHVFYIDYGN--REVLPSTRLGTLSP 464 (570)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEEEE---TTEEEEEETTTCC--EEEECGGGEECCCG
T ss_pred CCCcCCEEEEEECCCCEEEEEEEEEcC---CCeEEEEEEeCCC--eEEEEHHHCccCCH
Confidence 467999999998 78999999999976 2379999999986 47899998887653
No 87
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=90.24 E-value=0.38 Score=40.05 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=45.9
Q ss_pred CCCCcCCCCEEEEEeCC-eeeeeEEEEEEeeC----CeeEEEEEEcCCCCCcceeeecccccccCH
Q 022143 48 ASCPYQVNEKVLAFFQS-HVYEAKVIQVQYRL----KEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (302)
Q Consensus 48 ~~~~f~vge~vl~~~~~-~~y~AkIl~i~~~~----~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~ 108 (302)
.+..|.+||.|++.-.| -||.|+|++..... ....|.|.|-|-+. | -||..++|+.+++
T Consensus 8 ~~~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~-~-awv~~~~L~p~~~ 71 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGK-F-SEISADKLVALGL 71 (147)
T ss_dssp SSSSCCTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCC-E-EEEEGGGCEETTS
T ss_pred CCccCcCCCEEEEecCCcCCCCEEeccchhhhcccCCCCeEEEEEecCCC-E-EEEcHHHCccchH
Confidence 33469999999998777 79999999765421 12489999999664 3 6999999998764
No 88
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=90.09 E-value=0.63 Score=39.28 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=33.9
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeC----------------CeeEEEEEEcCCC
Q 022143 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRL----------------KEWTFRVHYLGWN 91 (302)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~----------------~~~~Y~VHY~Gwn 91 (302)
.|++||.|-|.+ -|-|+||+|++|-... ....|.|-|.+|-
T Consensus 10 lYKinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddyp 68 (161)
T 3db3_A 10 LYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYP 68 (161)
T ss_dssp SSCTTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCG
T ss_pred eEEecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCc
Confidence 799999999998 4899999999986531 3468999998874
No 89
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=90.06 E-value=0.56 Score=41.84 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=34.3
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEeeC-------CeeEEEEEEcCC
Q 022143 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYRL-------KEWTFRVHYLGW 90 (302)
Q Consensus 51 ~f~vge~vl~~~~--~~~y~AkIl~i~~~~-------~~~~Y~VHY~Gw 90 (302)
.|+|||.|-|.+. |.||+|+|+.|.... +...|.|-|.++
T Consensus 2 ~yki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~ 50 (226)
T 3ask_A 2 LYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDY 50 (226)
T ss_dssp CSCTTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTC
T ss_pred ccccCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccC
Confidence 4899999999994 799999999998733 447899999988
No 90
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=89.87 E-value=0.096 Score=38.13 Aligned_cols=35 Identities=14% Similarity=0.417 Sum_probs=28.7
Q ss_pred EEEEEEeeC-CeeE-EEEEEcCCCCCcceeeeccccc
Q 022143 70 KVIQVQYRL-KEWT-FRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 70 kIl~i~~~~-~~~~-Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
+|++.+..+ |... |+|.+.||....+-|.|++.|.
T Consensus 13 ~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~ 49 (70)
T 1g6z_A 13 RIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLS 49 (70)
T ss_dssp SCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGS
T ss_pred EEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHh
Confidence 466666655 6677 9999999999999999998873
No 91
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=88.66 E-value=0.45 Score=41.04 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.4
Q ss_pred CCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCC
Q 022143 49 SCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGW 90 (302)
Q Consensus 49 ~~~f~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~Gw 90 (302)
...|..|++||+.+.+ ..|.|.|.....+ ....|.|.|.|=
T Consensus 114 ~~~f~~G~~VLAlYP~TT~FY~A~V~~~p~~-~~~~y~L~FEdd 156 (180)
T 3mea_A 114 EALFQKEQLVLALYPQTTCFYRALIHAPPQR-PQDDYSVLFEDT 156 (180)
T ss_dssp GGSCCTTCEEEEECTTSSEEEEEEEEECCSS-TTCCEEEEEBCT
T ss_pred cccCCCCCEEEEeCCCCceeeEEEEecCCCC-CCCcEEEEEcCC
Confidence 4469999999999975 7999999997653 234799999975
No 92
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.88 E-value=2 Score=32.63 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=40.2
Q ss_pred CCCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHH
Q 022143 49 SCPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (302)
Q Consensus 49 ~~~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t~e 109 (302)
.+..++|+-|-|.. ++.||.|+|+++...+. .-|-|..+.. -+-|+.++|+...+.
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~---veVl~~DyGn--~~~V~~~~LR~L~~~ 76 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTL---VEVLLYDVGV--ELVVNVDCLRKLEEN 76 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSE---EEEECTTTCC--EEEEETTTEEECCHH
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCe---EEEEEEccCC--EEEEEccccccCCHH
Confidence 44688999998875 56999999999976543 3444545543 278888998876543
No 93
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=87.78 E-value=0.91 Score=44.48 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=38.7
Q ss_pred CCcCCCCEEEEEeCC---eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 022143 50 CPYQVNEKVLAFFQS---HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (302)
Q Consensus 50 ~~f~vge~vl~~~~~---~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k 105 (302)
..|++|-+|.+.+.. ..+.|.|.+|.. .+|+|||.||..++|-|+..+ +|+.
T Consensus 152 ~~F~~GmkLE~vD~~~~~~~~vAtV~~v~g----~rl~l~~~~~~~~~dfWc~~~Sp~IhP 208 (456)
T 3f70_A 152 YPFRQGMRLEVVDKSQVSRTRMAVVDTVIG----GRLRLLYEDGDSDDDFWCHMWSPLIHP 208 (456)
T ss_dssp CSSCTTCEEEEECTTCTTCEEEEEEEEEET----TEEEEEECC----CCEEEETTCTTEEE
T ss_pred CCCCCCCEEEEECCCCCcceEEEEEEEEEC----CEEEEEEcCCCCCCceEEeCCCCCeec
Confidence 369999999999853 567788888862 489999999999999999874 5544
No 94
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=87.23 E-value=1.4 Score=38.96 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=44.1
Q ss_pred CCCCCCCcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc
Q 022143 45 PTPASCPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH 101 (302)
Q Consensus 45 ~~~~~~~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ 101 (302)
|+.|...+.+|+++..-+.|.|+.|+|++++-. -=.|+|.+=+++ |||-.+
T Consensus 152 P~rpmv~~~~GQ~i~~E~~g~w~~~~V~~vD~S----Lv~v~f~~dkr~--EWIYRG 202 (213)
T 3dlm_A 152 PNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGS----LVRILFLDDKRC--EWIYRG 202 (213)
T ss_dssp TCCCCCCCCTTCEEEEEETTEEEEEEEEEEETT----EEEEEETTTTEE--EEEETT
T ss_pred CCCceEEcCCCCEEEEEecCcEEEEEEEEEcce----eEEEEEcCCCee--EEEEcC
Confidence 578999999999999999999999999999754 667899887754 999864
No 95
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=86.93 E-value=0.77 Score=44.81 Aligned_cols=44 Identities=32% Similarity=0.386 Sum_probs=34.8
Q ss_pred CCCCCCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCC
Q 022143 44 PPTPASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGW 90 (302)
Q Consensus 44 ~~~~~~~~f~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~Gw 90 (302)
|+..|...|.+|++||+.+.+ +.|.|.|...... ..|.|+|.|=
T Consensus 450 p~~~~~~~~~~~~~v~a~~p~tt~fy~a~v~~~~~~---~~~~~~f~~~ 495 (522)
T 3mp6_A 450 PPGFPTKNYPPGTKVLARYPETTTFYPAIVIGTKRD---GTCRLRFDGE 495 (522)
T ss_dssp CSSCCCCCCCTTCEEEEECTTCSEEEEEEEEEECTT---SCEEEEETTC
T ss_pred CCCCcccCCCCCCEEEEECCCCcceEeEEEecCCCC---CeEEEEecCC
Confidence 334455679999999999975 7999999986443 2699999993
No 96
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=86.46 E-value=0.65 Score=37.68 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=41.9
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 022143 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (302)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k~t 107 (302)
.+.+|++|.|.|. |..|.|+|+++.. ...|.|+|. ..+|=.+..++.|....
T Consensus 6 ~v~vGq~V~ak~~ngryy~~~V~~~~~---~~~y~V~F~--DgS~s~dl~PedIvs~d 58 (123)
T 2xdp_A 6 VISVGQTVITKHRNTRYYSCRVMAVTS---QTFYEVMFD--DGSFSRDTFPEDIVSRD 58 (123)
T ss_dssp CCCTTCCCCCCCCCCCCCCCEEEEEEE---EEEEEEEET--TSCEEEEECGGGBCSSC
T ss_pred ccccCCEEEEECCCCcEEeEEEEEEee---EEEEEEEcC--CCCccCCCCHhHccccc
Confidence 4789999999996 7999999999986 458999996 56666778777775543
No 97
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=82.81 E-value=2.3 Score=37.55 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=40.4
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
..+||.+|++.+. +.||.++|++|....++.+|.|-|..=. +.-|+..+|-
T Consensus 8 ~l~Vg~~vlg~k~~~~W~rg~v~~I~~~~~g~~YkVkF~~~g---~~ivs~~hiA 59 (213)
T 3dlm_A 8 DLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKG---KSLLSGNHIA 59 (213)
T ss_dssp TEETTCEEEEECTTSBEEEEEEEEEEEETTEEEEEEEESSSC---EEEECGGGEE
T ss_pred cEEEccEEEEEecCCcEEEEEEEEEEECCCCeEEEEEEcCCC---CEEeecceEE
Confidence 4779999999985 6999999999999888899999998422 3456655553
No 98
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=80.66 E-value=0.88 Score=37.22 Aligned_cols=59 Identities=19% Similarity=0.376 Sum_probs=45.3
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee----------------------------CCeeEEEEEEcCCCCCcceeeecc
Q 022143 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR----------------------------LKEWTFRVHYLGWNKSWDEWVGVH 101 (302)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~----------------------------~~~~~Y~VHY~Gwn~r~DeWV~~~ 101 (302)
.|+.|+.|.+.-.| -||.|.|++-... .+...|.|.|-|=...| -||+.+
T Consensus 5 ~~~~~dlVWAK~~gyP~wPa~Iidp~~p~~g~~~~g~~ip~pP~~Vl~~~~~~~~~~~~~~y~V~FFd~~~t~-aWv~~~ 83 (130)
T 3l42_A 5 PLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTW-QWLPRT 83 (130)
T ss_dssp SSCTTCEEEECCTTSCCEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHCSSCEEEEEESSTTCCE-EEEEGG
T ss_pred cCCCCCEEEEecccCCCCCEEEcCCCCccccccccCccCCCChHHHHhhcccccccCCCcEEEEEeCCCCCce-Eeeccc
Confidence 59999999998877 7999999873211 12458999999933444 699999
Q ss_pred cccccCHHh
Q 022143 102 RLMKDTEAN 110 (302)
Q Consensus 102 ri~k~t~en 110 (302)
.|..++.++
T Consensus 84 ~i~pl~~d~ 92 (130)
T 3l42_A 84 KLVPLGVNQ 92 (130)
T ss_dssp GEEESSSCH
T ss_pred ceeecCCch
Confidence 998887654
No 99
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=80.59 E-value=3.8 Score=33.32 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=33.5
Q ss_pred CCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcC-CCCCcceeeeccccccc
Q 022143 54 VNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLG-WNKSWDEWVGVHRLMKD 106 (302)
Q Consensus 54 vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~G-wn~r~DeWV~~~ri~k~ 106 (302)
.+..|.+.. .|.||+|.|.++..+ .++|+|.+ |.. .++|+.++++-.
T Consensus 4 ~~~~VEV~~~~G~~y~a~V~~v~~d----~~~V~f~n~w~~--~~~vp~~~vRlp 52 (128)
T 3h8z_A 4 QGLPVEVRGSNGAFYKGFVKDVHED----SVTIFFENNWQS--ERQIPFGDVRLP 52 (128)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECSS----EEEEEETTCTTC--CEEEEGGGEECC
T ss_pred cccEEEEecCCCCEEEEEEEEEeCC----cEEEEEccccCc--ceEechhhEEcC
Confidence 455665554 589999999988433 69999964 443 579998877653
No 100
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=77.63 E-value=1.6 Score=36.59 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=28.2
Q ss_pred CCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEc-CCCC
Q 022143 53 QVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYL-GWNK 92 (302)
Q Consensus 53 ~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~-Gwn~ 92 (302)
.+|++|++.|.+ -+|.++|..... ..+|.|.|. |..+
T Consensus 10 ~iG~rVfArWsd~~yyYpG~V~~~~~---~~~Y~V~FdDG~~k 49 (156)
T 1ssf_A 10 FVGLRVVAKWSSNGYFYSGKITRDVG---AGKYKLLFDDGYEC 49 (156)
T ss_dssp STTCEEEECSSCSSEEEEEEEEECCT---TTEEEEECTTSCEE
T ss_pred hhccEEEEEcCCCCcccccEEEEecc---CCEEEEEEcCCCee
Confidence 699999999964 677999998633 337999975 5544
No 101
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=76.63 E-value=5.6 Score=33.49 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=36.1
Q ss_pred CcCCCCEEEEEeC-------CeeeeeEEEEEEeeCCeeEEEEE-EcCCCCCccee-e-eccccccc
Q 022143 51 PYQVNEKVLAFFQ-------SHVYEAKVIQVQYRLKEWTFRVH-YLGWNKSWDEW-V-GVHRLMKD 106 (302)
Q Consensus 51 ~f~vge~vl~~~~-------~~~y~AkIl~i~~~~~~~~Y~VH-Y~Gwn~r~DeW-V-~~~ri~k~ 106 (302)
.++||+.|++-|. |.||+|+|.+.+......+-+++ +.|= .+.+.. | ..+.|+|.
T Consensus 92 ~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~~~~rT~rEl~~~i~LG~-d~lndcri~fvdEIykI 156 (161)
T 3db3_A 92 DLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTARELYANVVLGD-DSLNDCRIIFVDEVFKI 156 (161)
T ss_dssp GCCTTCEEEEEECSSSTTSCCEEEEEEEEEEEECSSCEEEEEEEECSS-SEEEEEEESCTTCCBCC
T ss_pred HCCcCcEEEEecCCCCccccceeEEEEEeeehhhhhhheeEEEEEECC-CcccceEEEEeeeEEEE
Confidence 4799999999874 79999999998775544444444 5565 333333 2 23555553
No 102
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=73.16 E-value=5.4 Score=33.24 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=31.3
Q ss_pred CCEEEEEeCC---eeeeeEEEEEEee--CCeeEEEEEEcCCCC
Q 022143 55 NEKVLAFFQS---HVYEAKVIQVQYR--LKEWTFRVHYLGWNK 92 (302)
Q Consensus 55 ge~vl~~~~~---~~y~AkIl~i~~~--~~~~~Y~VHY~Gwn~ 92 (302)
-.+|+++|.| -.|+|.|+..... .+...|+|+|..=+.
T Consensus 9 ~NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~ 51 (153)
T 2fhd_A 9 KNRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDATM 51 (153)
T ss_dssp GGEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSCE
T ss_pred cceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCCC
Confidence 4679999976 6899999999865 567899999986554
No 103
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=70.21 E-value=0.38 Score=33.29 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=24.7
Q ss_pred EEEEEEeeC-Cee-EEEEEEcCCCCCcceeeecccc
Q 022143 70 KVIQVQYRL-KEW-TFRVHYLGWNKSWDEWVGVHRL 103 (302)
Q Consensus 70 kIl~i~~~~-~~~-~Y~VHY~Gwn~r~DeWV~~~ri 103 (302)
+|++.+..+ |.. .|+|...|| ..+-|-|++.|
T Consensus 5 ~Ild~r~~~~g~~~~YlVKWkgy--~~~TWEp~~nL 38 (54)
T 1x3p_A 5 SVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNV 38 (54)
T ss_dssp CCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTCCS
T ss_pred EEEEEEEcCCCcEEEEEEEECCC--CcCCccchHHC
Confidence 355555554 666 899999999 67899999886
No 104
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=64.60 E-value=2.1 Score=36.94 Aligned_cols=31 Identities=16% Similarity=0.446 Sum_probs=26.5
Q ss_pred EeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 022143 75 QYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (302)
Q Consensus 75 ~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~k 105 (302)
+..+|...|+|.+.||+..++.|+++..|..
T Consensus 52 r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~ 82 (187)
T 2b2y_A 52 NKEPGEIQYLIKWKGWSHIHNTWETEETLKQ 82 (187)
T ss_dssp CCSCCEEEEEEEETTSCGGGCEEECHHHHHH
T ss_pred cccCCcEEEEEEECCCCcccCeeCCHHHhCc
Confidence 3456778999999999999999999988754
No 105
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=61.07 E-value=3.2 Score=42.88 Aligned_cols=27 Identities=7% Similarity=0.266 Sum_probs=23.9
Q ss_pred CCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 78 LKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 78 ~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
++..+|+|-|.||+..++.|++++.|.
T Consensus 69 ~~~~eylvKWkg~s~~hntWe~~e~L~ 95 (800)
T 3mwy_W 69 KENYEFLIKWTDESHLHNTWETYESIG 95 (800)
T ss_dssp HHHCEEEEECSSSCTTSCEEECHHHHC
T ss_pred cCceEEEEEeCCcceeeccccCHHHHh
Confidence 456799999999999999999998764
No 106
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=61.06 E-value=1.3 Score=35.42 Aligned_cols=40 Identities=15% Similarity=0.414 Sum_probs=32.2
Q ss_pred eeeeeE-------EEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 65 HVYEAK-------VIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 65 ~~y~Ak-------Il~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
..|.+. |++-+..+|...|+|-+.||+..++-|-|...|.
T Consensus 35 ~~Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~ 81 (115)
T 2b2y_C 35 TIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLK 81 (115)
T ss_dssp SHHHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHH
T ss_pred ceEEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHcC
Confidence 456664 3555556788999999999999999999998774
No 107
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=59.59 E-value=6.7 Score=29.46 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=36.6
Q ss_pred CcCCCCEEEEEe---CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeec
Q 022143 51 PYQVNEKVLAFF---QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGV 100 (302)
Q Consensus 51 ~f~vge~vl~~~---~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~ 100 (302)
.-.+||++++.- +..-..+.|+++...+|.+-|.|+| |..-+.-+|-+
T Consensus 5 ~A~vGDrlvv~g~~vg~~~R~GeIvEV~g~dG~PPY~VRw--~ddGHe~lv~P 55 (83)
T 2a7y_A 5 HAKVGDYLVVKGTTTERHDQHAEIIEVRSADGSPPYVVRW--LVNGHETTVYP 55 (83)
T ss_dssp CCCTTEEEEESCTTTSCCEEEEEEEECSCSSSCSCEEEEE--TTTTEEEEECC
T ss_pred CccCCCEEEEecCcCCCCCcEEEEEEEECCCCCCCEEEEe--cCCCcEEEEec
Confidence 346899988865 3467899999999999999999998 34445555543
No 108
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=58.09 E-value=20 Score=31.77 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=24.7
Q ss_pred CcCCCCEEEEEe-------CCeeeeeEEEEEEeeC
Q 022143 51 PYQVNEKVLAFF-------QSHVYEAKVIQVQYRL 78 (302)
Q Consensus 51 ~f~vge~vl~~~-------~~~~y~AkIl~i~~~~ 78 (302)
.+.+|..|++.+ .|.||.|+|+.+...+
T Consensus 75 ~l~~g~~vm~nyn~~~~~~~G~~y~~~I~~~~~~r 109 (226)
T 3ask_A 75 DLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETR 109 (226)
T ss_dssp GCCTTCEEEEEECTTSTTSCCEEEEEEEEEEEECS
T ss_pred ccccCcEEEEecccCCccccCceeehhhhhhhhcc
Confidence 478999999988 5899999999999764
No 109
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=51.93 E-value=28 Score=33.85 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=39.7
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 022143 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (302)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~--ri~k 105 (302)
.|++|-++.+.+. ..++.|.|.++... .|+|||.| ...|-|+..+ +|+.
T Consensus 156 ~F~~GmkLE~vD~~~~~~i~vAtV~~v~g~----rl~l~~~d--~~~dfwc~~~Sp~I~P 209 (447)
T 3h6z_A 156 RFRLGLNLECVDKDRISQVRLATVTKIVGD----RLFLRYFD--SDDGFWCHEDSPIIHP 209 (447)
T ss_dssp SSCTTCEEEEECTTCTTEEEEEEEEEEETT----EEEEEETT--CSCEEEEETTCTTEEC
T ss_pred ccCCCCEEEEEcCCCCccEEEEEEEEEECC----cEEEEEEC--CCCCEEEeCCCCCccc
Confidence 6999999999985 47899999998744 79999965 4789999874 5554
No 110
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.76 E-value=23 Score=25.14 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=22.2
Q ss_pred eeEEEEEEcCCCCCcceeeecccc
Q 022143 80 EWTFRVHYLGWNKSWDEWVGVHRL 103 (302)
Q Consensus 80 ~~~Y~VHY~Gwn~r~DeWV~~~ri 103 (302)
...|+|.+.|+...-.-|-+++.|
T Consensus 32 ~~eYLVKWkgl~y~e~TWE~~~~l 55 (68)
T 2epb_A 32 VTHYLVKWCSLPYEESTWELEEDV 55 (68)
T ss_dssp EEEEEEECTTSCGGGCCEEETTTS
T ss_pred ceEEEEEEcCCChhcCccccchhc
Confidence 679999999999999999999887
No 111
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=51.63 E-value=4.6 Score=34.41 Aligned_cols=26 Identities=8% Similarity=0.307 Sum_probs=23.3
Q ss_pred eeEEEEEEcCCCCCcceeeecccccc
Q 022143 80 EWTFRVHYLGWNKSWDEWVGVHRLMK 105 (302)
Q Consensus 80 ~~~Y~VHY~Gwn~r~DeWV~~~ri~k 105 (302)
...|||-|.||+..++.|+++..|..
T Consensus 46 ~~EYlVKWKg~Sy~HnTWe~ee~L~~ 71 (177)
T 2h1e_A 46 NYEFLIKWTDESHLHNTWETYESIGQ 71 (177)
T ss_dssp HEEEEEEETTSCGGGCEEECHHHHCS
T ss_pred ceEEEEEECCCccccCeecCHHHHhh
Confidence 46999999999999999999987753
No 112
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=49.79 E-value=66 Score=31.02 Aligned_cols=52 Identities=13% Similarity=0.030 Sum_probs=37.7
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCC--cceee-ecc--cccc
Q 022143 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKS--WDEWV-GVH--RLMK 105 (302)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r--~DeWV-~~~--ri~k 105 (302)
.|++|-++.+.+. ..++-|.|.+|..+ ....|||.||... +|-|. ..+ .|+.
T Consensus 254 ~F~~GMKLEavDp~~p~~icvATV~~v~~~---g~l~l~~Dg~~~~~~~d~~~~h~~Sp~I~P 313 (437)
T 3feo_A 254 WFKEGMKLEAIDPLNLSTICVATIRKVLAD---GFLMIGIDGSEAADGSDWFCYHATSPSIFP 313 (437)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEEEECGG---GEEEEEETTCCC-CCTTCEEEETTCTTEEC
T ss_pred ccccCCEEEEEcCCCCceEEEEEEEEEccC---CEEEEEeCCCCCCCCCCeEEeeCCCCCccc
Confidence 4999999999986 47889999988621 2456999999754 37786 432 5544
No 113
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=47.21 E-value=22 Score=24.07 Aligned_cols=31 Identities=6% Similarity=0.114 Sum_probs=25.2
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEeeCCee
Q 022143 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYRLKEW 81 (302)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~~~~~ 81 (302)
.|.+||.|.+..|+ .-++|+|.++...++..
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v 35 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKV 35 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEE
Confidence 58999999999987 46899999997655433
No 114
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=46.88 E-value=33 Score=27.50 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=26.0
Q ss_pred CCCEEEEEeC--CeeeeeEEEEEEeeCCeeEEEEEEcC
Q 022143 54 VNEKVLAFFQ--SHVYEAKVIQVQYRLKEWTFRVHYLG 89 (302)
Q Consensus 54 vge~vl~~~~--~~~y~AkIl~i~~~~~~~~Y~VHY~G 89 (302)
+|-+|++.|. +.+|..+|...... .+|.|-|..
T Consensus 7 ~G~rV~AkWsdn~~yYpG~V~~~~~~---~ky~V~FdD 41 (123)
T 2g3r_A 7 VGLRVVAKWSSNGYFYSGKITRDVGA---GKYKLLFDD 41 (123)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEET---TEEEEEETT
T ss_pred cceEEEEEeccCCcCcccEEEEeccC---CeEEEEEcC
Confidence 7999999996 36999999885433 389999753
No 115
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=42.57 E-value=41 Score=26.96 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.3
Q ss_pred CCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcC
Q 022143 53 QVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLG 89 (302)
Q Consensus 53 ~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~G 89 (302)
.+|+.|.+.|. |..|.|+.+..... ..|-|-|..
T Consensus 66 ~~G~~V~V~W~DG~~y~a~f~g~~~~---~~YtV~FeD 100 (123)
T 2xdp_A 66 AEGEVVQVKWPDGKLYGAKYFGSNIA---HMYQVEFED 100 (123)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEEEE---EEEEEECTT
T ss_pred CCCCEEEEEcCCCCEEeEEEeeeeeE---EEEEEEECC
Confidence 48999999995 89999999987654 377777753
No 116
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=39.44 E-value=57 Score=25.93 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=26.8
Q ss_pred CCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcC
Q 022143 53 QVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLG 89 (302)
Q Consensus 53 ~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~G 89 (302)
.+|+.|.+.| .|..|.|+.+..... ..|-|-|..
T Consensus 65 ~~G~~V~V~W~DG~~y~a~f~g~~~~---~~Y~V~feD 99 (118)
T 2qqr_A 65 AEGEVVQVRWTDGQVYGAKFVASHPI---QMYQVEFED 99 (118)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEEEE---EEEEEEETT
T ss_pred CCCCEEEEEcCCCCEeeeEEeceeEE---EEEEEEECC
Confidence 3899999999 579999999876543 377777764
No 117
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=34.93 E-value=66 Score=23.19 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=26.5
Q ss_pred eEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccc
Q 022143 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (302)
Q Consensus 69 AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeWV~~~ri 103 (302)
-+|+.....+|...|+|++.|... =+||+...+
T Consensus 19 ekI~g~~~~~Gel~fLvkWkg~d~--~dlVpa~~a 51 (74)
T 2fmm_A 19 ERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEA 51 (74)
T ss_dssp EEEEEEEEETTEEEEEEEETTCSC--CEEEEHHHH
T ss_pred eEEEEEEcCCCcEEEEEEECCCCc--ccEEEHHHH
Confidence 478888888999999999999765 259987654
No 118
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=31.09 E-value=1.6e+02 Score=21.66 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHh
Q 022143 195 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFD 234 (302)
Q Consensus 195 Pa~~tV~~IL~dY~~~~~~~~~~~~~~~~e~~~Gl~~yFn 234 (302)
|...|+.+.+++|+.++. . +.....+..-...|+.+++
T Consensus 4 ~~~~t~~~~~~~fl~~l~-~-~~s~~Ti~~Y~~~l~~f~~ 41 (117)
T 3nrw_A 4 RPSLSPREARDRYLAHRQ-T-DAADASIKSFRYRLKHFVE 41 (117)
T ss_dssp CCCCCHHHHHHHHHHHHT-T-TSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-c-CCCHHHHHHHHHHHHHHHH
Confidence 677899999999999987 2 2223333333444444444
No 119
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=29.07 E-value=90 Score=22.68 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=29.9
Q ss_pred CCceEEEeCChhHHHHHHHHHHHHhhcCceeeCCCCCCHHHHHHHHHHhh
Q 022143 162 MENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYR 211 (302)
Q Consensus 162 ~~~~i~I~lP~~Lk~iLvdD~~~I~~~~~L~~LPa~~tV~~IL~dY~~~~ 211 (302)
....++|.||+.|+..|..-+.. ...||.+||.++++..
T Consensus 33 ~~~Rlti~i~~~lh~rlK~~Aa~-----------~g~Smsdvvreli~~~ 71 (76)
T 1p94_A 33 KIKRVNVNFDEEKHTRFKAACAR-----------KGTSITDVVNQLVDNW 71 (76)
T ss_dssp CEEECCEEEEHHHHHHHHHHHHH-----------HTCCHHHHHHHHHHHH
T ss_pred CceeEEEEcCHHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHH
Confidence 44568899999999998876652 2358999998887654
No 120
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=28.85 E-value=76 Score=26.26 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=29.9
Q ss_pred CCCcCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEEc
Q 022143 49 SCPYQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHYL 88 (302)
Q Consensus 49 ~~~f~vge~vl~~~~~-~~y~AkIl~i~~~~~~~~Y~VHY~ 88 (302)
...|.+||+|.+..|+ .-++|.|.+++..++...-.|...
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~if 165 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF 165 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEET
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEEC
Confidence 3469999999999998 469999999987655444444443
No 121
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.78 E-value=1.1e+02 Score=21.48 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=16.8
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEE
Q 022143 50 CPYQVNEKVLAFFQ---SHVYEAKV 71 (302)
Q Consensus 50 ~~f~vge~vl~~~~---~~~y~AkI 71 (302)
+.|..||.|.+... +-||.++.
T Consensus 30 Ls~~~Gd~i~v~~~~~~~~Ww~g~~ 54 (78)
T 2dl5_A 30 LTIEEHEVLEVIEDGDMEDWVKARN 54 (78)
T ss_dssp CCBCSSEEEEEEECCSSSSEEEEEC
T ss_pred CCCCCCCEEEEEeccCCCCcEEEEe
Confidence 35999999998864 56887764
No 122
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=26.96 E-value=94 Score=25.09 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=21.6
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEe
Q 022143 51 PYQVNEKVLAFFQSHVYEAKVIQVQY 76 (302)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~ 76 (302)
.|.+|+.|..+|..--|-++|.+.+.
T Consensus 7 ~~~~g~~v~~~yKTG~YigeI~e~~~ 32 (130)
T 1y71_A 7 TFEIGEIVTGIYKTGKYIGEVTNSRP 32 (130)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEET
T ss_pred cCCccceeEEEEecceeEEEEEeecC
Confidence 48999999999988888888886543
No 123
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=25.26 E-value=63 Score=27.21 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=27.3
Q ss_pred EEEEEEe-----eCCeeEEEEEEcCCCCCcceeeeccccc
Q 022143 70 KVIQVQY-----RLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (302)
Q Consensus 70 kIl~i~~-----~~~~~~Y~VHY~Gwn~r~DeWV~~~ri~ 104 (302)
+|++.+. ..|...|+|-+.|+...-.-|-+++.|.
T Consensus 125 rIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~ 164 (177)
T 2h1e_A 125 RIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIV 164 (177)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHH
T ss_pred EEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhh
Confidence 4555553 4677899999999998888999987653
No 124
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=23.45 E-value=2e+02 Score=20.38 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHhh
Q 022143 195 PRTPNVDDILEKYCDYR 211 (302)
Q Consensus 195 Pa~~tV~~IL~dY~~~~ 211 (302)
|...|+.+++++|++..
T Consensus 4 ~~~~t~~~~~~~~l~~~ 20 (117)
T 2kkp_A 4 PSKITVEQWLNRWLTDY 20 (117)
T ss_dssp SCCSCHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHH
Confidence 67889999999999874
No 125
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=23.43 E-value=36 Score=31.79 Aligned_cols=46 Identities=11% Similarity=0.209 Sum_probs=31.4
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccee
Q 022143 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEW 97 (302)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~Gwn~r~DeW 97 (302)
.|++|+ |+||+..++.-|-=+.-.......-|-+.|.||..|||.-
T Consensus 237 d~epGD-av~F~~~tlHga~plgn~~~~rRRAfS~RfvGDDaryd~~ 282 (344)
T 3nnf_A 237 EYNLGD-AFFFNKYVLHQSVPLKPGLHKLRRAFVIRLVDYDTRVDEE 282 (344)
T ss_dssp CBCTTC-EEEEETTCEEEECCBCTTSCSCEEEEEEEEEETTCBBCHH
T ss_pred cCCCCc-EEEEecceeecCCCCCCCCccceeEEEEEEecCcceehHH
Confidence 368999 8899888877664111111122346999999999999963
No 126
>4hg1_A Putative cytoplasmic protein; PSI-biology, MCSG, midwest center for structural genomics; HET: MLY MSE MLZ PG4; 1.75A {Salmonella enterica subsp} PDB: 4hg1_C* 4hg1_B*
Probab=23.43 E-value=27 Score=29.92 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=22.7
Q ss_pred eEEEeCChhHHHHHHHHHHHHhhcCcee
Q 022143 165 FVNIQIPPPLKKQLVDDCEFITHLGKLV 192 (302)
Q Consensus 165 ~i~I~lP~~Lk~iLvdD~~~I~~~~~L~ 192 (302)
.-.+.||.+|+.+|.-||++++-.++.|
T Consensus 46 tET~~LPeSLkALLAYD~~L~sp~~~~V 73 (225)
T 4hg1_A 46 TETTELPESLXALLAYDRDLLSNYNMPV 73 (225)
T ss_dssp CCEECCCHHHHHHHHHCTTCBCTTSCBS
T ss_pred cccccCcHHHHHHHHhhhhccCcCCCcH
Confidence 3468999999999999999987555544
No 127
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=22.78 E-value=61 Score=27.55 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=27.2
Q ss_pred EEEEEEe---eCCeeEEEEEEcCCCCCcceeeecccc
Q 022143 70 KVIQVQY---RLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (302)
Q Consensus 70 kIl~i~~---~~~~~~Y~VHY~Gwn~r~DeWV~~~ri 103 (302)
+||+.+. ..|...|+|.+.|+...-.-|.+++.|
T Consensus 135 rIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i 171 (187)
T 2b2y_A 135 RIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALI 171 (187)
T ss_dssp EEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHH
T ss_pred EEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhh
Confidence 4666665 467889999999999888889988755
No 128
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=27.87 E-value=19 Score=28.74 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=27.6
Q ss_pred cCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcC
Q 022143 52 YQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLG 89 (302)
Q Consensus 52 f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~G 89 (302)
+.||..|-+.+.|-++||||..+... .+-.|-|..
T Consensus 7 L~VGTeVSAKyrGAFCEAkIk~V~r~---vKcKV~~k~ 41 (118)
T 2lcd_A 7 LTVGTDVSAKYRGAFCEAKIKTVKRL---VKVKVLLKQ 41 (118)
Confidence 78999999999999999999987653 244555543
No 129
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=21.88 E-value=2.4e+02 Score=21.78 Aligned_cols=35 Identities=9% Similarity=-0.073 Sum_probs=24.5
Q ss_pred CCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEE
Q 022143 53 QVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHY 87 (302)
Q Consensus 53 ~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY 87 (302)
++|++|+++. .|.....+|..+.......-|.|..
T Consensus 26 ~~gd~V~s~d~~g~~~~~~v~~~~~~~~~~~~~i~t 61 (139)
T 2in0_A 26 RKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRI 61 (139)
T ss_dssp TCCCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEE
T ss_pred cCCCEEEEECCCCCEEEEEEEEEEEcCCcEEEEEEe
Confidence 6799999996 5677667887776654445566654
No 130
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=21.79 E-value=1.3e+02 Score=24.10 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=24.0
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEeeC
Q 022143 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYRL 78 (302)
Q Consensus 51 ~f~vge~vl~~~~--~~~y~AkIl~i~~~~ 78 (302)
.+++|+.|++..+ |.+..++|.+|....
T Consensus 91 ~l~~GD~v~~~~~~~~~~~~~~V~~v~~~~ 120 (145)
T 1at0_A 91 RIEEKNQVLVRDVETGELRPQRVVKVGSVR 120 (145)
T ss_dssp GCCTTCEEEEECTTTCCEEEEEEEEEEEEE
T ss_pred HCcCCCEEEEecCCCCCEEEEEEEEEEEEE
Confidence 5789999999987 779999999997643
No 131
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=21.05 E-value=83 Score=27.75 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=22.2
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEe
Q 022143 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQY 76 (302)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~ 76 (302)
...+||.|.++.+ |..|.|+|.++..
T Consensus 33 R~~~Gd~v~l~dg~g~~~~a~I~~i~~ 59 (251)
T 4e8b_A 33 RMGPGQALQLFDGSNQVFDAEITSASK 59 (251)
T ss_dssp CCCSCCEEEEECSSSEEEEEEEEEECS
T ss_pred cCCCCCEEEEEeCCCcEEEEEEEEeec
Confidence 4789999999986 6899999998864
No 132
>3fo8_D Tail sheath protein GP18; mostly beta, viral structural protein, bacteriophage T4, viral protein; 1.80A {Enterobacteria phage T4}
Probab=20.87 E-value=1.2e+02 Score=27.44 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=28.8
Q ss_pred CCCCCcCCCCEEEEEeCCe-e-eeeEEEEEEeeCCeeEEEE
Q 022143 47 PASCPYQVNEKVLAFFQSH-V-YEAKVIQVQYRLKEWTFRV 85 (302)
Q Consensus 47 ~~~~~f~vge~vl~~~~~~-~-y~AkIl~i~~~~~~~~Y~V 85 (302)
.+|..|+|||.|-+.|.+. . -..||.+++.+.+....||
T Consensus 23 ~~GsnY~VGD~i~Vky~~~vve~~GkVT~VD~dGkI~~vfi 63 (283)
T 3fo8_D 23 TPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINI 63 (283)
T ss_dssp ECCBSCCTTCEEEEEETTEEEEEEEEEEEECTTCCEEEEEC
T ss_pred cCCCCceeCCEEEEEEcCcEEecCceEEEEcCCCCEEEEEC
Confidence 3566799999999999873 3 3479999987665555444
No 133
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=20.30 E-value=1.1e+02 Score=25.18 Aligned_cols=30 Identities=10% Similarity=-0.073 Sum_probs=23.2
Q ss_pred CCCcCCCCEEEEEeC---CeeeeeEEEEEEeeC
Q 022143 49 SCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRL 78 (302)
Q Consensus 49 ~~~f~vge~vl~~~~---~~~y~AkIl~i~~~~ 78 (302)
|..|.+||-|++.-. ...|-|+|.++....
T Consensus 24 g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~ 56 (174)
T 1w4s_A 24 NSMYHVGDYVYVEPAEANLQPHIVCIERLWEDS 56 (174)
T ss_dssp --CCCTTCEEEECCSSTTSCCEEEEEEEEEECT
T ss_pred CEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcC
Confidence 346999999999754 358999999998853
Done!