BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022144
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 79/103 (76%)
Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
IKGPW+ EED+ + +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+ +T E
Sbjct: 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 71 EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
ED I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 140 bits (354), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 79/103 (76%)
Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
IKGPW+ EED+ + +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+ +T E
Sbjct: 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 71 EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
ED I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 79/103 (76%)
Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
IKGPW+ EED+ + +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+ +T E
Sbjct: 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 71 EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
ED I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 77/107 (71%)
Query: 9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 68
D +KGPW+ EED+ + LV+ YG + W+LI+K + GR GK CR RW N L+P+V+ +T
Sbjct: 4 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 69 PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSS 115
EED I AH GN+WA IA+LL GRTDNA+KNHWNST+KRK +
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDT 110
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 75/102 (73%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 71
KGPW+ EED+ + VQ YGP+ WS I+K + GR GK CR RW N L+P+V+ +T EE
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 72 DETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
D I +AH R GN+WA IA+LL GRTDNA+KNHWNST++RK
Sbjct: 87 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 77/112 (68%)
Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
+KGP++ ED+ ++ V+ GP+NW I+ +P RS K CR RW N L P V +TPE
Sbjct: 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 71 EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQV 122
EDETI R + + G+KW+ IA+L+ GRTDNAIKN WNS++ ++ S+ S+ ++
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 71
K ++PEEDE L+R V +G +W +I+ + P R+ + CR RW N L+P + H P+T EE
Sbjct: 11 KQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 72 DETILRAHARFGNKWATIARLLSGRTDNAIKNHW 105
D +++ +G +WA IA+ GRTD IKN W
Sbjct: 70 DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 67 FTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAI 125
FTPEEDE + RA A+ G+ W IA R ++ W + L S ++ DA+
Sbjct: 14 FTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDAL 72
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 59/94 (62%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 71
K ++ EED LQ+LV YG ++W IS+ + R+ + CR RW N ++P + P++PEE
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 72 DETILRAHARFGNKWATIARLLSGRTDNAIKNHW 105
D + + +A +G KW I++ L R+DN I+N W
Sbjct: 61 DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 13 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWC 55
PWSPEED L + YGP+ W+ ISK + RS + R RW
Sbjct: 54 DPWSPEEDMLLDQKYAEYGPK-WNKISKFLKNRSDNNIRNRWM 95
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 62 VEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
V+ +T EED I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV 62
K W+ EED + + + G R W+ I+K +PGR+ + + W + + +V
Sbjct: 3 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 72.8 bits (177), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 61 QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
+V+ +T EED + +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53
Score = 31.2 bits (69), Expect = 0.72, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV 62
K W+ EED L + + G R W+ I+K +PGR+ + + W + + +V
Sbjct: 5 KTSWTEEEDRILYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 71.2 bits (173), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
IKGPW+ EED+ L +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 33.1 bits (74), Expect = 0.18, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 66 PFTPEEDETILRAHARFGNK-WATIARLLSGRTDNAIKNHWNSTL 109
P+T EED+ +++ ++G K W+ IA+ L GR + W++ L
Sbjct: 5 PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
IKGPW+ EED+ + +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 66 PFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTL 109
P+T EED+ +++ ++G +W+ IA+ L GR + W++ L
Sbjct: 5 PWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
IKGPW+ EED+ + LVQ YGP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 66 PFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTL 109
P+T EED+ ++ ++G +W+ IA+ L GR + W++ L
Sbjct: 5 PWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
K W+ EEDE L++LV+ G +W +I+ +P R+ C+ RW L+P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
K W+ EEDE L++LV+ G +W +I+ +P R+ C+ RW L+P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLS 59
K W+ EEDE L+ LV+ +G ++W ++ P R+ + C+ RW LS
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 15 WSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 68
W EDE L+ V YG WS I+ + +S K C+ RW L P ++ ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 14 PWSPEEDEALQRLVQNY---GPRNWSLISKSIPGRSGKSCRLRW 54
PW+ EE + L++ ++ Y P W I++++PGR+ K C R+
Sbjct: 5 PWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRY 48
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 34.7 bits (78), Expect = 0.067, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRW 54
K W+ EE E ++ VQ YG NW+ ISK+ P R+ + RW
Sbjct: 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 34.7 bits (78), Expect = 0.074, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRW 54
K W+ EE E ++ VQ YG NW+ ISK+ P R+ + RW
Sbjct: 14 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 58
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 34.7 bits (78), Expect = 0.074, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRW 54
K W+ EE E ++ VQ YG NW+ ISK+ P R+ + RW
Sbjct: 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 34.3 bits (77), Expect = 0.079, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRW 54
K W+ EE E ++ VQ YG NW+ ISK+ P R+ + RW
Sbjct: 2 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 46
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 34.3 bits (77), Expect = 0.079, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRW 54
K W+ EE E ++ VQ YG NW+ ISK+ P R+ + RW
Sbjct: 10 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 54
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 32.7 bits (73), Expect = 0.24, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 65 RPFTPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHW 105
RP++ +E++ RA A + ++WA +AR + GRT +K H+
Sbjct: 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 32.3 bits (72), Expect = 0.32, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 67 FTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
+T EE E + A+FG +W I++L+ RT +K++ K K
Sbjct: 12 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK 57
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
Of The Human Cyclin-D-Binding Transcription Factor 1
(Hdmp1), Northeast Structural Genomics Consortium (Nesg)
Target Id Hr8011a
Length = 73
Score = 31.2 bits (69), Expect = 0.71, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 67 FTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSD 118
+TPEE E + + GN WATI L GR+ +++K+ +C M D
Sbjct: 26 YTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKD--------RCRLMKD 68
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1,
Nmr, 18 Structures
Length = 53
Score = 27.7 bits (60), Expect = 8.7, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 10 RIKGPWSPEEDEALQRLVQNYGPRNWS--LISKSIPGRSGKSCRLRW 54
R + W EED+ L+ V+ YG NWS L+ R+ + RW
Sbjct: 1 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 47
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein
2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein
2
Length = 466
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 14 PWSPEEDEALQRLVQNYGPRNWSLISKSIP 43
PWSPE+ + L N P N+ LI+ + P
Sbjct: 31 PWSPEDIDTRFLLYTNENPNNFQLITGTEP 60
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1
Length = 70
Score = 27.3 bits (59), Expect = 9.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 3 STKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWS--LISKSIPGRSGKSCRLRW 54
+ +K R + W EED+ L+ V+ YG NWS L+ R+ + RW
Sbjct: 2 TPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 55
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 14 PWSPEEDEALQRLVQNYGPRNWSLISKSIP 43
PWSPE+ + L N P N+ LI+ + P
Sbjct: 29 PWSPEDIDTRFLLYTNENPNNFQLITGTEP 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,844,209
Number of Sequences: 62578
Number of extensions: 273061
Number of successful extensions: 544
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 55
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)