Query 022144
Match_columns 302
No_of_seqs 254 out of 1312
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 8.4E-35 2.9E-39 234.1 10.9 105 9-113 1-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.5E-34 8.4E-39 232.9 11.2 104 12-115 1-104 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 2.2E-34 7.5E-39 240.9 9.9 109 11-119 1-109 (131)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 1E-33 3.5E-38 235.6 10.5 108 6-113 21-128 (128)
5 3osg_A MYB21; transcription-DN 100.0 2.8E-33 9.5E-38 232.9 10.7 105 7-112 6-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.4E-31 4.9E-36 230.1 10.2 107 7-113 53-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.1E-30 3.7E-35 224.6 6.1 115 9-123 3-118 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.8 7.9E-22 2.7E-26 163.8 6.7 86 38-123 1-87 (128)
9 2dim_A Cell division cycle 5-l 99.8 4.8E-22 1.6E-26 149.4 4.1 67 6-72 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 4.8E-19 1.6E-23 161.2 7.5 105 8-112 4-200 (246)
11 2juh_A Telomere binding protei 99.8 2.6E-19 8.9E-24 148.4 3.5 84 5-88 10-103 (121)
12 2llk_A Cyclin-D-binding MYB-li 99.7 1.2E-18 4.1E-23 132.7 6.4 62 50-113 9-70 (73)
13 2roh_A RTBP1, telomere binding 99.7 2E-18 7E-23 143.2 6.0 81 5-85 24-114 (122)
14 2d9a_A B-MYB, MYB-related prot 99.7 6.3E-18 2.2E-22 123.1 5.2 57 7-63 3-59 (60)
15 1gvd_A MYB proto-oncogene prot 99.7 9.7E-18 3.3E-22 118.8 4.4 52 10-61 1-52 (52)
16 2cu7_A KIAA1915 protein; nucle 99.7 7.2E-17 2.4E-21 121.8 9.0 58 58-115 3-60 (72)
17 2din_A Cell division cycle 5-l 99.7 4.1E-17 1.4E-21 121.0 7.2 61 56-117 1-61 (66)
18 1ity_A TRF1; helix-turn-helix, 99.7 1.3E-17 4.6E-22 124.8 4.3 64 5-68 3-68 (69)
19 1guu_A C-MYB, MYB proto-oncoge 99.7 1.9E-17 6.6E-22 117.1 3.3 52 10-61 1-52 (52)
20 2d9a_A B-MYB, MYB-related prot 99.7 1.2E-16 4.2E-21 116.2 6.8 56 59-114 3-59 (60)
21 2dim_A Cell division cycle 5-l 99.6 2.6E-16 8.8E-21 118.0 7.6 64 59-122 4-68 (70)
22 3sjm_A Telomeric repeat-bindin 99.6 1.1E-16 3.6E-21 118.8 3.1 55 9-63 8-64 (64)
23 1ity_A TRF1; helix-turn-helix, 99.6 1.3E-15 4.4E-20 114.0 8.4 60 57-116 3-65 (69)
24 1x41_A Transcriptional adaptor 99.6 2.2E-16 7.4E-21 115.3 4.0 56 7-62 3-58 (60)
25 1guu_A C-MYB, MYB proto-oncoge 99.6 6.2E-16 2.1E-20 109.3 6.3 50 62-111 1-51 (52)
26 1w0t_A Telomeric repeat bindin 99.6 1.2E-15 4.1E-20 108.5 6.6 50 63-112 1-53 (53)
27 1x41_A Transcriptional adaptor 99.6 1.9E-15 6.6E-20 110.2 7.1 54 59-112 3-57 (60)
28 1gvd_A MYB proto-oncogene prot 99.6 1.2E-15 4.2E-20 107.9 5.9 50 62-111 1-51 (52)
29 1w0t_A Telomeric repeat bindin 99.6 5.8E-16 2E-20 110.2 3.3 49 11-59 1-51 (53)
30 2elk_A SPCC24B10.08C protein; 99.6 1.1E-15 3.7E-20 111.0 3.5 51 8-58 5-56 (58)
31 2yum_A ZZZ3 protein, zinc fing 99.6 4.6E-15 1.6E-19 112.5 7.1 58 59-116 3-66 (75)
32 2yum_A ZZZ3 protein, zinc fing 99.6 6.8E-16 2.3E-20 117.0 1.7 61 7-67 3-68 (75)
33 3sjm_A Telomeric repeat-bindin 99.6 6.6E-15 2.3E-19 109.1 7.0 53 61-113 8-63 (64)
34 2din_A Cell division cycle 5-l 99.5 3.7E-16 1.3E-20 115.8 -0.6 58 6-65 3-60 (66)
35 2elk_A SPCC24B10.08C protein; 99.5 2E-14 6.7E-19 104.3 7.3 50 60-109 5-56 (58)
36 2ltp_A Nuclear receptor corepr 99.3 1.5E-15 5.1E-20 119.4 0.0 57 56-112 8-64 (89)
37 2cu7_A KIAA1915 protein; nucle 99.5 2.8E-15 9.7E-20 113.0 1.5 58 6-64 3-60 (72)
38 2aje_A Telomere repeat-binding 99.5 1E-14 3.5E-19 118.1 4.3 80 5-84 6-95 (105)
39 2ckx_A NGTRF1, telomere bindin 99.5 2.4E-14 8.4E-19 111.4 5.4 69 13-81 1-79 (83)
40 2llk_A Cyclin-D-binding MYB-li 99.4 5.3E-14 1.8E-18 107.0 4.3 55 6-63 17-71 (73)
41 3osg_A MYB21; transcription-DN 99.4 1.4E-13 4.7E-18 114.0 6.9 66 59-124 6-71 (126)
42 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.7E-13 5.7E-18 104.2 6.5 54 60-113 14-71 (73)
43 1gv2_A C-MYB, MYB proto-oncoge 99.4 2.1E-13 7.1E-18 109.1 6.0 63 61-123 1-64 (105)
44 3zqc_A MYB3; transcription-DNA 99.4 8.7E-14 3E-18 115.8 3.6 82 7-93 49-130 (131)
45 2yus_A SWI/SNF-related matrix- 99.4 1.8E-13 6.1E-18 105.5 4.4 51 6-57 12-62 (79)
46 2yus_A SWI/SNF-related matrix- 99.4 2.9E-13 1E-17 104.2 5.5 48 61-108 15-62 (79)
47 2k9n_A MYB24; R2R3 domain, DNA 99.3 9.9E-13 3.4E-17 105.8 6.1 61 64-124 1-62 (107)
48 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.8E-13 6.3E-18 104.0 1.5 55 5-59 11-68 (73)
49 2ckx_A NGTRF1, telomere bindin 99.3 1.5E-12 5E-17 101.3 6.5 49 65-113 1-54 (83)
50 1x58_A Hypothetical protein 49 99.3 1.5E-12 5E-17 95.8 6.1 51 62-112 6-59 (62)
51 2ltp_A Nuclear receptor corepr 99.0 1.5E-13 5.2E-18 107.9 0.0 55 5-60 9-63 (89)
52 2aje_A Telomere repeat-binding 99.3 4.2E-12 1.5E-16 102.7 7.2 56 59-114 8-68 (105)
53 2juh_A Telomere binding protei 99.3 2.9E-12 9.9E-17 106.1 6.2 56 57-112 10-70 (121)
54 1ign_A Protein (RAP1); RAP1,ye 99.3 2.6E-12 8.7E-17 117.1 5.8 57 60-116 4-66 (246)
55 2roh_A RTBP1, telomere binding 99.2 1.1E-11 3.8E-16 102.8 7.3 55 59-113 26-85 (122)
56 2cjj_A Radialis; plant develop 99.2 1.1E-11 3.8E-16 98.2 6.7 50 63-112 7-60 (93)
57 2cjj_A Radialis; plant develop 99.1 2E-11 7E-16 96.7 2.0 48 11-58 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.1 2.2E-10 7.7E-15 83.7 7.1 49 62-110 10-58 (61)
59 2iw5_B Protein corest, REST co 99.0 4.7E-10 1.6E-14 101.5 6.9 77 34-111 104-180 (235)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.8E-09 6.2E-14 81.6 7.3 51 61-112 5-59 (72)
61 2eqr_A N-COR1, N-COR, nuclear 98.9 6.6E-10 2.3E-14 81.2 4.4 52 6-58 6-57 (61)
62 1x58_A Hypothetical protein 49 98.9 4.3E-10 1.5E-14 82.7 2.9 50 9-59 5-57 (62)
63 3hm5_A DNA methyltransferase 1 98.9 1.4E-09 4.7E-14 86.2 5.4 63 48-114 18-85 (93)
64 2xag_B REST corepressor 1; ami 98.8 2.7E-09 9.3E-14 105.9 5.8 46 65-110 381-426 (482)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.7 5.2E-09 1.8E-13 79.2 2.3 50 9-59 5-57 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.6 7.2E-08 2.5E-12 73.1 7.2 50 63-112 7-60 (73)
67 1fex_A TRF2-interacting telome 98.5 3.1E-08 1E-12 72.1 2.0 48 12-59 2-58 (59)
68 2iw5_B Protein corest, REST co 98.5 6.1E-08 2.1E-12 87.7 4.0 50 9-59 130-179 (235)
69 1wgx_A KIAA1903 protein; MYB D 98.5 8.9E-08 3E-12 72.6 3.9 48 13-60 9-59 (73)
70 1fex_A TRF2-interacting telome 98.5 2.1E-07 7E-12 67.7 5.5 47 64-110 2-58 (59)
71 1ofc_X ISWI protein; nuclear p 98.5 4E-07 1.4E-11 85.9 8.6 101 12-112 110-276 (304)
72 2yqk_A Arginine-glutamic acid 98.3 1.5E-06 5E-11 63.8 6.8 48 60-107 5-53 (63)
73 4eef_G F-HB80.4, designed hema 98.0 9.9E-07 3.4E-11 66.8 1.1 43 64-106 20-66 (74)
74 1ug2_A 2610100B20RIK gene prod 98.0 3.4E-05 1.1E-09 60.6 8.7 47 65-111 34-83 (95)
75 4eef_G F-HB80.4, designed hema 98.0 9.5E-07 3.3E-11 66.9 -0.2 44 12-55 20-66 (74)
76 2yqk_A Arginine-glutamic acid 97.9 7.2E-06 2.5E-10 60.1 3.9 48 7-55 4-52 (63)
77 2crg_A Metastasis associated p 97.9 2.3E-05 7.9E-10 58.6 6.4 44 63-106 7-51 (70)
78 4a69_C Nuclear receptor corepr 97.9 2.1E-05 7.1E-10 62.1 6.1 45 64-108 43-87 (94)
79 2lr8_A CAsp8-associated protei 97.1 2.1E-06 7.1E-11 64.0 0.0 44 66-110 16-62 (70)
80 4iej_A DNA methyltransferase 1 97.8 4.8E-05 1.6E-09 60.0 6.5 50 65-114 31-85 (93)
81 2xag_B REST corepressor 1; ami 97.6 2.3E-05 7.8E-10 78.0 3.7 48 9-57 377-424 (482)
82 2y9y_A Imitation switch protei 97.6 0.00021 7.4E-09 68.9 9.0 103 13-115 124-295 (374)
83 3hm5_A DNA methyltransferase 1 97.5 4.4E-05 1.5E-09 60.3 3.3 46 12-58 30-80 (93)
84 4a69_C Nuclear receptor corepr 97.4 6.9E-05 2.4E-09 59.1 3.3 43 12-55 43-85 (94)
85 2crg_A Metastasis associated p 97.4 0.0001 3.5E-09 55.0 4.1 45 10-55 6-51 (70)
86 4b4c_A Chromodomain-helicase-D 97.4 0.0006 2.1E-08 59.9 9.6 102 10-111 5-196 (211)
87 2ebi_A DNA binding protein GT- 97.1 0.00039 1.3E-08 53.2 4.5 49 64-112 4-66 (86)
88 2ebi_A DNA binding protein GT- 96.9 0.00017 5.7E-09 55.3 0.6 48 11-58 3-63 (86)
89 2lr8_A CAsp8-associated protei 95.8 0.00021 7.1E-09 53.3 0.0 46 13-59 15-62 (70)
90 1ug2_A 2610100B20RIK gene prod 96.6 0.00068 2.3E-08 53.2 1.7 44 13-56 34-79 (95)
91 1irz_A ARR10-B; helix-turn-hel 95.8 0.027 9.2E-07 41.4 6.7 48 62-109 5-57 (64)
92 4iej_A DNA methyltransferase 1 95.2 0.011 3.9E-07 46.4 3.1 44 13-57 31-79 (93)
93 1ofc_X ISWI protein; nuclear p 94.1 0.066 2.2E-06 50.4 5.9 48 64-111 110-158 (304)
94 1irz_A ARR10-B; helix-turn-hel 93.5 0.056 1.9E-06 39.7 3.4 49 9-57 4-56 (64)
95 4b4c_A Chromodomain-helicase-D 92.8 0.16 5.3E-06 44.3 5.8 50 62-111 5-59 (211)
96 2xb0_X Chromo domain-containin 91.0 0.17 5.8E-06 46.8 4.1 28 13-40 169-196 (270)
97 2xb0_X Chromo domain-containin 82.2 2.4 8.2E-05 39.0 6.4 48 64-111 3-55 (270)
98 2o8x_A Probable RNA polymerase 77.7 4.7 0.00016 27.7 5.4 42 70-112 18-59 (70)
99 1ku3_A Sigma factor SIGA; heli 74.8 6.2 0.00021 27.9 5.5 43 69-112 12-58 (73)
100 2y9y_A Imitation switch protei 73.8 6 0.0002 38.1 6.6 51 65-116 124-176 (374)
101 2p7v_B Sigma-70, RNA polymeras 71.6 6.6 0.00023 27.3 4.9 42 70-112 8-53 (68)
102 2li6_A SWI/SNF chromatin-remod 68.8 4.6 0.00016 32.1 4.0 38 74-111 53-98 (116)
103 3cz6_A DNA-binding protein RAP 68.1 6.1 0.00021 33.9 4.7 32 6-40 108-147 (168)
104 3hug_A RNA polymerase sigma fa 65.1 12 0.00041 27.6 5.4 41 70-111 40-80 (92)
105 2lm1_A Lysine-specific demethy 62.6 11 0.00038 29.2 5.0 38 74-111 48-97 (107)
106 1kkx_A Transcription regulator 61.3 6.7 0.00023 31.7 3.6 37 75-111 53-97 (123)
107 2jrz_A Histone demethylase jar 60.8 10 0.00035 30.1 4.6 38 74-111 44-93 (117)
108 2cxy_A BAF250B subunit, HBAF25 58.8 13 0.00043 29.9 4.8 38 74-111 55-104 (125)
109 2eqy_A RBP2 like, jumonji, at 57.4 13 0.00044 29.8 4.6 38 74-111 46-95 (122)
110 1tty_A Sigma-A, RNA polymerase 56.2 22 0.00076 26.0 5.5 42 70-112 21-66 (87)
111 1x3u_A Transcriptional regulat 55.1 24 0.00082 24.7 5.4 43 67-112 17-59 (79)
112 3ulq_B Transcriptional regulat 54.4 30 0.001 25.8 6.0 47 63-112 26-72 (90)
113 2jxj_A Histone demethylase jar 52.3 8.6 0.00029 29.2 2.7 36 75-110 41-88 (96)
114 1ig6_A MRF-2, modulator recogn 51.6 13 0.00043 28.9 3.6 38 74-111 37-87 (107)
115 1or7_A Sigma-24, RNA polymeras 51.5 24 0.00084 28.5 5.6 31 80-111 153-183 (194)
116 1fse_A GERE; helix-turn-helix 51.4 29 0.00099 23.8 5.2 45 65-112 10-54 (74)
117 1je8_A Nitrate/nitrite respons 51.2 27 0.00093 25.3 5.2 44 66-112 21-64 (82)
118 3c57_A Two component transcrip 51.0 28 0.00095 26.0 5.4 44 66-112 27-70 (95)
119 3cz6_A DNA-binding protein RAP 48.6 35 0.0012 29.2 6.1 83 20-108 64-152 (168)
120 2kk0_A AT-rich interactive dom 48.4 22 0.00076 29.3 4.8 38 74-111 68-118 (145)
121 3i4p_A Transcriptional regulat 48.3 24 0.00082 28.8 5.0 45 70-115 3-48 (162)
122 1c20_A DEAD ringer protein; DN 47.5 25 0.00086 28.2 4.9 38 74-111 56-106 (128)
123 3e7l_A Transcriptional regulat 46.5 36 0.0012 23.5 5.0 35 70-105 19-53 (63)
124 3mzy_A RNA polymerase sigma-H 45.6 33 0.0011 26.6 5.3 30 81-111 122-151 (164)
125 1xsv_A Hypothetical UPF0122 pr 45.3 40 0.0014 26.2 5.6 41 70-111 28-68 (113)
126 2jpc_A SSRB; DNA binding prote 43.7 39 0.0013 22.3 4.8 39 72-112 3-41 (61)
127 2yqf_A Ankyrin-1; death domain 42.9 33 0.0011 26.6 4.8 36 66-102 12-47 (111)
128 1ntc_A Protein (nitrogen regul 41.7 40 0.0014 25.0 4.9 37 69-106 50-86 (91)
129 1rp3_A RNA polymerase sigma fa 41.7 41 0.0014 27.9 5.6 40 71-111 191-230 (239)
130 1tc3_C Protein (TC3 transposas 41.0 59 0.002 19.7 5.9 38 66-105 5-42 (51)
131 2p1m_A SKP1-like protein 1A; F 40.9 17 0.00057 30.2 2.9 36 36-78 119-154 (160)
132 2rq5_A Protein jumonji; develo 40.9 30 0.001 27.8 4.3 38 74-111 46-96 (121)
133 2rnj_A Response regulator prot 40.8 34 0.0012 25.0 4.4 44 66-112 29-72 (91)
134 2q1z_A RPOE, ECF SIGE; ECF sig 40.6 16 0.00054 29.5 2.7 30 81-111 149-178 (184)
135 2k27_A Paired box protein PAX- 36.7 1.6E+02 0.0054 23.3 10.7 90 13-106 24-133 (159)
136 1s7o_A Hypothetical UPF0122 pr 35.9 67 0.0023 24.9 5.6 41 70-111 25-65 (113)
137 2dbb_A Putative HTH-type trans 35.8 67 0.0023 25.4 5.8 43 70-113 9-52 (151)
138 1p4w_A RCSB; solution structur 35.2 80 0.0027 23.9 5.8 46 64-112 32-77 (99)
139 2jvw_A Uncharacterized protein 35.0 33 0.0011 26.4 3.4 23 20-45 18-40 (88)
140 2of5_H Leucine-rich repeat and 34.5 45 0.0015 26.3 4.4 29 72-101 13-41 (118)
141 2e1c_A Putative HTH-type trans 34.4 65 0.0022 26.6 5.6 45 69-114 26-71 (171)
142 2o71_A Death domain-containing 34.3 48 0.0016 26.2 4.5 34 64-101 19-52 (115)
143 2of5_A Death domain-containing 34.0 45 0.0015 26.3 4.3 37 61-101 16-52 (114)
144 1umq_A Photosynthetic apparatu 33.0 53 0.0018 24.4 4.3 37 67-104 38-74 (81)
145 2cyy_A Putative HTH-type trans 31.9 80 0.0028 25.0 5.6 44 70-114 7-51 (151)
146 1k78_A Paired box protein PAX5 28.3 2.1E+02 0.0071 22.2 8.2 77 13-93 31-118 (149)
147 2ast_A S-phase kinase-associat 27.5 26 0.00088 28.8 1.9 35 36-77 120-154 (159)
148 1wxp_A THO complex subunit 1; 26.3 62 0.0021 25.0 3.8 31 72-103 18-48 (110)
149 2cg4_A Regulatory protein ASNC 25.5 1.2E+02 0.0041 23.9 5.6 43 70-113 8-51 (152)
150 3v7d_A Suppressor of kinetocho 25.3 28 0.00095 29.2 1.7 41 35-87 126-166 (169)
151 3clo_A Transcriptional regulat 25.1 99 0.0034 26.8 5.4 44 66-112 197-240 (258)
152 2p5v_A Transcriptional regulat 25.1 1.2E+02 0.0041 24.2 5.6 43 70-113 10-53 (162)
153 1eto_A FIS, factor for inversi 24.1 1.2E+02 0.0039 23.2 5.0 36 69-105 57-92 (98)
154 2pn6_A ST1022, 150AA long hypo 23.5 1.1E+02 0.0038 23.9 5.0 45 70-115 3-48 (150)
155 1k78_A Paired box protein PAX5 23.3 2.4E+02 0.0083 21.8 7.0 41 65-107 31-71 (149)
156 3t72_q RNA polymerase sigma fa 23.0 1.5E+02 0.005 22.6 5.4 41 70-111 22-66 (99)
157 1i1g_A Transcriptional regulat 22.5 1.3E+02 0.0044 23.2 5.1 43 71-114 5-48 (141)
158 1pdn_C Protein (PRD paired); p 22.2 2E+02 0.0069 21.0 6.0 40 65-106 16-55 (128)
159 2ia0_A Putative HTH-type trans 21.9 1.5E+02 0.005 24.3 5.6 45 69-114 16-61 (171)
160 3c1y_A DNA integrity scanning 21.7 49 0.0017 31.7 2.8 28 253-280 205-237 (377)
161 1qgp_A Protein (double strande 21.2 1.4E+02 0.0047 21.5 4.7 44 68-112 12-59 (77)
162 1fad_A Protein (FADD protein); 21.0 61 0.0021 24.3 2.8 29 73-102 15-43 (99)
163 2lfw_A PHYR sigma-like domain; 20.9 83 0.0028 25.0 3.7 42 70-112 96-137 (157)
164 3i4p_A Transcriptional regulat 20.8 23 0.00078 28.9 0.3 39 18-57 3-41 (162)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=8.4e-35 Score=234.10 Aligned_cols=105 Identities=59% Similarity=1.124 Sum_probs=99.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHH
Q 022144 9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWAT 88 (302)
Q Consensus 9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~ 88 (302)
+++||+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 46899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144 89 IARLLSGRTDNAIKNHWNSTLKRKC 113 (302)
Q Consensus 89 IA~~l~gRT~~q~knRw~~~Lkrk~ 113 (302)
||++|+|||+++|++||+.++++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHcCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999998863
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=2.5e-34 Score=232.87 Aligned_cols=104 Identities=36% Similarity=0.725 Sum_probs=100.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhh
Q 022144 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIAR 91 (302)
Q Consensus 12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~ 91 (302)
||+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|+++|.+||++|..||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 78999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHhhhhccC
Q 022144 92 LLSGRTDNAIKNHWNSTLKRKCSS 115 (302)
Q Consensus 92 ~l~gRT~~q~knRw~~~Lkrk~~~ 115 (302)
+|+|||+++|++||+.++++..+.
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHHh
Confidence 999999999999999999887543
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=2.2e-34 Score=240.88 Aligned_cols=109 Identities=48% Similarity=0.936 Sum_probs=105.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHh
Q 022144 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIA 90 (302)
Q Consensus 11 ~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA 90 (302)
+||+||+|||++|+++|.+||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|+++|.+||++|..||
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhhhhccCCCcc
Q 022144 91 RLLSGRTDNAIKNHWNSTLKRKCSSMSDE 119 (302)
Q Consensus 91 ~~l~gRT~~q~knRw~~~Lkrk~~~~~~~ 119 (302)
++|+|||+++|++||+.+|++++......
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~ 109 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNH 109 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999998776543
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1e-33 Score=235.60 Aligned_cols=108 Identities=55% Similarity=1.021 Sum_probs=102.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCc
Q 022144 6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNK 85 (302)
Q Consensus 6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~Gnk 85 (302)
-+++..+|+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|++++++||++
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~ 100 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 100 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 36788999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144 86 WATIARLLSGRTDNAIKNHWNSTLKRKC 113 (302)
Q Consensus 86 W~~IA~~l~gRT~~q~knRw~~~Lkrk~ 113 (302)
|..||++|+|||+++|++||+.++++++
T Consensus 101 W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 101 WAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999998763
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=2.8e-33 Score=232.92 Aligned_cols=105 Identities=38% Similarity=0.775 Sum_probs=100.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcH
Q 022144 7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKW 86 (302)
Q Consensus 7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW 86 (302)
.....||+||+|||++|+++|++||. +|..||..|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 45788999999999999999999996 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 87 ATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 87 ~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
..||++|+|||+++|++||+.++++.
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988775
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.4e-31 Score=230.05 Aligned_cols=107 Identities=58% Similarity=1.104 Sum_probs=102.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcH
Q 022144 7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKW 86 (302)
Q Consensus 7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW 86 (302)
++++.+|+||+|||++|+++|.+||..+|..||..|++||++||+.||.++|+|.+++++||+|||++|++++.+||++|
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W 132 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 132 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCH
Confidence 57788999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144 87 ATIARLLSGRTDNAIKNHWNSTLKRKC 113 (302)
Q Consensus 87 ~~IA~~l~gRT~~q~knRw~~~Lkrk~ 113 (302)
..||++|+|||+++|++||+.++++++
T Consensus 133 ~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 133 AEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999998864
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=1.1e-30 Score=224.58 Aligned_cols=115 Identities=30% Similarity=0.687 Sum_probs=69.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCC-cHH
Q 022144 9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGN-KWA 87 (302)
Q Consensus 9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~Gn-kW~ 87 (302)
...|++||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 3578999999999999999999988999999999999999999999999999999999999999999999999995 799
Q ss_pred HHhhhcCCCCHHHHHHHHHHHhhhhccCCCcccccc
Q 022144 88 TIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVD 123 (302)
Q Consensus 88 ~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~~~ 123 (302)
.||.+|+|||+++|++||+++|...+....++..++
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd 118 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 118 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHH
Confidence 999999999999999999999998887766655444
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.85 E-value=7.9e-22 Score=163.76 Aligned_cols=86 Identities=27% Similarity=0.631 Sum_probs=59.7
Q ss_pred HHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCC-cHHHHhhhcCCCCHHHHHHHHHHHhhhhccCC
Q 022144 38 ISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGN-KWATIARLLSGRTDNAIKNHWNSTLKRKCSSM 116 (302)
Q Consensus 38 IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~ 116 (302)
||+.|++||++||++||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|+|||+.||++||.++|...+...
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence 78899999999999999999999999999999999999999999995 79999999999999999999999999888777
Q ss_pred Ccccccc
Q 022144 117 SDESQVD 123 (302)
Q Consensus 117 ~~~~~~~ 123 (302)
.++..+|
T Consensus 81 ~WT~eEd 87 (128)
T 1h8a_C 81 SWTEEED 87 (128)
T ss_dssp CCCHHHH
T ss_pred cCCHHHH
Confidence 6665544
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.8e-22 Score=149.38 Aligned_cols=67 Identities=28% Similarity=0.611 Sum_probs=64.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHH
Q 022144 6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEED 72 (302)
Q Consensus 6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED 72 (302)
..+.+++|+||+|||++|+++|.+||..+|..||..|++||++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 3567889999999999999999999988999999999999999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.76 E-value=4.8e-19 Score=161.24 Aligned_cols=105 Identities=28% Similarity=0.395 Sum_probs=92.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC-----HHHHHhhCCCCCcccccccccccCCCCCC-------------------
Q 022144 8 VDRIKGPWSPEEDEALQRLVQNYGPRN-----WSLISKSIPGRSGKSCRLRWCNQLSPQVE------------------- 63 (302)
Q Consensus 8 ~~~~Kg~WT~EED~~L~~lV~k~G~~n-----W~~IA~~lp~Rt~kqCr~Rw~n~L~p~~k------------------- 63 (302)
....|++||+|||++|+++|++||.++ |.+||+.|+|||+.||+.||.++|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 467889999999999999999998653 99999999999999999999999999886
Q ss_pred ----------CCCCChHHHHHHHHHHHh-c--------------------------------CC----------------
Q 022144 64 ----------HRPFTPEEDETILRAHAR-F--------------------------------GN---------------- 84 (302)
Q Consensus 64 ----------k~~WT~EED~~Ll~lv~~-~--------------------------------Gn---------------- 84 (302)
+..||.|||-.|...+.+ | |.
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 899999999999998876 1 11
Q ss_pred ---------cHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 85 ---------KWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 85 ---------kW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
.|..||+.+|+||.+++|+||..+|+..
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999988776
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.75 E-value=2.6e-19 Score=148.39 Aligned_cols=84 Identities=24% Similarity=0.384 Sum_probs=78.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhh----CCCCCcccccccccccCC-----CCCCCC-CCChHHHHH
Q 022144 5 KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKS----IPGRSGKSCRLRWCNQLS-----PQVEHR-PFTPEEDET 74 (302)
Q Consensus 5 ~~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~----lp~Rt~kqCr~Rw~n~L~-----p~~kk~-~WT~EED~~ 74 (302)
....++.+++||+|||+.|+++|++||.++|..|++. |++||..+|++||.|+|+ |.++++ +|++||+.+
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3467899999999999999999999998899999998 489999999999999998 999998 999999999
Q ss_pred HHHHHHhcCCcHHH
Q 022144 75 ILRAHARFGNKWAT 88 (302)
Q Consensus 75 Ll~lv~~~GnkW~~ 88 (302)
|+++++.|||+|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999987
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=132.70 Aligned_cols=62 Identities=27% Similarity=0.441 Sum_probs=48.3
Q ss_pred ccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144 50 CRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113 (302)
Q Consensus 50 Cr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk~ 113 (302)
..-||.++|+|.+++++||+|||++|++++++||++|+.||++| |||+++||+||+. |++.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~-L~~~~ 70 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL-MKDTC 70 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHH-CSCCC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHH-HHHHc
Confidence 45689999999999999999999999999999999999999999 9999999999985 44443
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.73 E-value=2e-18 Score=143.23 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=75.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhC----CCCCcccccccccccC-----CCCCCCCCCChHH-HHH
Q 022144 5 KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSI----PGRSGKSCRLRWCNQL-----SPQVEHRPFTPEE-DET 74 (302)
Q Consensus 5 ~~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~l----p~Rt~kqCr~Rw~n~L-----~p~~kk~~WT~EE-D~~ 74 (302)
+...++.+++||+|||+.|+++|++||.++|..|++.+ ++||..+|++||.|++ +|.++++.|+++| +++
T Consensus 24 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~ 103 (122)
T 2roh_A 24 DFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR 103 (122)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence 34668899999999999999999999998999999863 8999999999999999 8999999999999 899
Q ss_pred HHHHHHhcCCc
Q 022144 75 ILRAHARFGNK 85 (302)
Q Consensus 75 Ll~lv~~~Gnk 85 (302)
|+++|+.|||+
T Consensus 104 v~~~h~~~g~~ 114 (122)
T 2roh_A 104 VLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhhH
Confidence 99999999975
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.3e-18 Score=123.10 Aligned_cols=57 Identities=32% Similarity=0.712 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCC
Q 022144 7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE 63 (302)
Q Consensus 7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~k 63 (302)
++.+.|++||+|||++|+++|.+||..+|.+||..|++||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 578899999999999999999999988999999999999999999999999999875
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.69 E-value=9.7e-18 Score=118.77 Aligned_cols=52 Identities=58% Similarity=1.192 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCC
Q 022144 10 RIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61 (302)
Q Consensus 10 ~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~ 61 (302)
++||+||+|||++|+++|.+||..+|..||..|++||++||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999888999999999999999999999999984
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.69 E-value=7.2e-17 Score=121.84 Aligned_cols=58 Identities=26% Similarity=0.369 Sum_probs=55.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhhccC
Q 022144 58 LSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSS 115 (302)
Q Consensus 58 L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~ 115 (302)
++|.+++++||+|||++|+++|.+||++|..||++|+|||++||++||+.+++++...
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998766
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=121.02 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=57.0
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCC
Q 022144 56 NQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMS 117 (302)
Q Consensus 56 n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~ 117 (302)
.+|+|.+++++||+|||++|++++++||++|.+||+ |+|||++||++||+.+|++.+....
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 379999999999999999999999999999999999 8899999999999999999876653
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.68 E-value=1.3e-17 Score=124.79 Aligned_cols=64 Identities=27% Similarity=0.379 Sum_probs=60.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC--CCCcccccccccccCCCCCCCCCCC
Q 022144 5 KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRWCNQLSPQVEHRPFT 68 (302)
Q Consensus 5 ~~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp--~Rt~kqCr~Rw~n~L~p~~kk~~WT 68 (302)
++++.+.+++||+|||++|+++|++||..+|..||..|+ +||+.||++||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 567789999999999999999999999889999999999 9999999999999999999988764
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=1.9e-17 Score=117.14 Aligned_cols=52 Identities=37% Similarity=0.810 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCC
Q 022144 10 RIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61 (302)
Q Consensus 10 ~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~ 61 (302)
+.||+||+|||++|+++|++||..+|..||+.|++||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 3689999999999999999999879999999999999999999999999984
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.2e-16 Score=116.21 Aligned_cols=56 Identities=29% Similarity=0.449 Sum_probs=52.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhcc
Q 022144 59 SPQVEHRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKCS 114 (302)
Q Consensus 59 ~p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~ 114 (302)
+|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|+..++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 4778999999999999999999999 6999999999999999999999999988754
No 21
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=117.99 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=58.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCCccccc
Q 022144 59 SPQVEHRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQV 122 (302)
Q Consensus 59 ~p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~~ 122 (302)
.+.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|+..++...+...+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE 68 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence 4678999999999999999999999 899999999999999999999999999998887665544
No 22
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.62 E-value=1.1e-16 Score=118.82 Aligned_cols=55 Identities=33% Similarity=0.516 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC--CCCcccccccccccCCCCCC
Q 022144 9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRWCNQLSPQVE 63 (302)
Q Consensus 9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp--~Rt~kqCr~Rw~n~L~p~~k 63 (302)
...|++||+|||++|+++|++||..+|..||+.++ +||+.||++||.|++++.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45789999999999999999999989999999865 99999999999999988764
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.61 E-value=1.3e-15 Score=113.96 Aligned_cols=60 Identities=22% Similarity=0.379 Sum_probs=55.5
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcC--CCCHHHHHHHHHHHhhhhccCC
Q 022144 57 QLSPQVEHRPFTPEEDETILRAHARFG-NKWATIARLLS--GRTDNAIKNHWNSTLKRKCSSM 116 (302)
Q Consensus 57 ~L~p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~--gRT~~q~knRw~~~Lkrk~~~~ 116 (302)
..++..++++||+|||++|+++|.+|| ++|..||.+|+ |||+.||++||+++|+..+.+.
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 456778899999999999999999999 79999999999 9999999999999999987664
No 24
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=2.2e-16 Score=115.30 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=52.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCC
Q 022144 7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV 62 (302)
Q Consensus 7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~ 62 (302)
.+.+.+++||+|||++|+++|++||..+|.+||+.|++||++||++||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 45789999999999999999999998899999999999999999999999998653
No 25
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=6.2e-16 Score=109.33 Aligned_cols=50 Identities=30% Similarity=0.557 Sum_probs=46.2
Q ss_pred CCCCCCChHHHHHHHHHHHhcCC-cHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 62 VEHRPFTPEEDETILRAHARFGN-KWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 62 ~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
+++++||+|||++|+++|.+||. +|..||++|+|||+.||++||+++|+.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 999999999999999999999999864
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=1.2e-15 Score=108.55 Aligned_cols=50 Identities=24% Similarity=0.495 Sum_probs=46.8
Q ss_pred CCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcC--CCCHHHHHHHHHHHhhhh
Q 022144 63 EHRPFTPEEDETILRAHARFG-NKWATIARLLS--GRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 63 kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~--gRT~~q~knRw~~~Lkrk 112 (302)
++++||+|||++|+++|.+|| ++|..||.+|+ |||+.||++||.++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 578999999999999999999 79999999999 999999999999998764
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=1.9e-15 Score=110.21 Aligned_cols=54 Identities=19% Similarity=0.369 Sum_probs=50.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 59 SPQVEHRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 59 ~p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
.+.+.+++||+|||++|+++|++|| ++|.+||++|+|||+.||++||+++|...
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 3578899999999999999999999 89999999999999999999999988654
No 28
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.59 E-value=1.2e-15 Score=107.87 Aligned_cols=50 Identities=28% Similarity=0.715 Sum_probs=46.9
Q ss_pred CCCCCCChHHHHHHHHHHHhcCC-cHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 62 VEHRPFTPEEDETILRAHARFGN-KWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 62 ~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
+++++||+|||++|+++|.+||. +|..||.+|+|||+.||++||+++|+.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999996 699999999999999999999998864
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=5.8e-16 Score=110.16 Aligned_cols=49 Identities=31% Similarity=0.484 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC--CCCcccccccccccCC
Q 022144 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRWCNQLS 59 (302)
Q Consensus 11 ~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp--~Rt~kqCr~Rw~n~L~ 59 (302)
.||+||+|||++|+++|++||.++|..||..|+ +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999999889999999999 9999999999999875
No 30
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.56 E-value=1.1e-15 Score=111.00 Aligned_cols=51 Identities=20% Similarity=0.444 Sum_probs=47.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC-CCCcccccccccccC
Q 022144 8 VDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQL 58 (302)
Q Consensus 8 ~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp-~Rt~kqCr~Rw~n~L 58 (302)
..+.+++||+|||++|+++|++||..+|..||+.|+ +||++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999989999999999 999999999999875
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.6e-15 Score=112.46 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=53.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcC------CcHHHHhhhcCCCCHHHHHHHHHHHhhhhccCC
Q 022144 59 SPQVEHRPFTPEEDETILRAHARFG------NKWATIARLLSGRTDNAIKNHWNSTLKRKCSSM 116 (302)
Q Consensus 59 ~p~~kk~~WT~EED~~Ll~lv~~~G------nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~ 116 (302)
+|.+.+++||+|||++|++++.+|| ++|..||.+|+|||..||++||+++|++..+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4788999999999999999999999 799999999999999999999999998876543
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.8e-16 Score=117.04 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=56.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CCHHHHHhhCCCCCcccccccccccCCCCCCCCCC
Q 022144 7 DVDRIKGPWSPEEDEALQRLVQNYGP-----RNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPF 67 (302)
Q Consensus 7 ~~~~~Kg~WT~EED~~L~~lV~k~G~-----~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~W 67 (302)
+++..+++||+|||++|+++|.+||. .+|.+||.+|++||..||+.||+++|.+.++.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 67899999999999999999999996 68999999999999999999999999887776643
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=6.6e-15 Score=109.10 Aligned_cols=53 Identities=25% Similarity=0.478 Sum_probs=47.4
Q ss_pred CCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcC--CCCHHHHHHHHHHHhhhhc
Q 022144 61 QVEHRPFTPEEDETILRAHARFG-NKWATIARLLS--GRTDNAIKNHWNSTLKRKC 113 (302)
Q Consensus 61 ~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~--gRT~~q~knRw~~~Lkrk~ 113 (302)
..++++||+|||++|+++|.+|| ++|..||++++ |||+.||++||+++++..+
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 35789999999999999999999 69999999865 9999999999999998765
No 34
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.7e-16 Score=115.82 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCC
Q 022144 6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHR 65 (302)
Q Consensus 6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~ 65 (302)
-+|.+.|++||+|||++|+++|++||. +|.+||+ ++|||++||+.||.++|++.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 367899999999999999999999996 8999999 889999999999999998876654
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.52 E-value=2e-14 Score=104.30 Aligned_cols=50 Identities=22% Similarity=0.431 Sum_probs=46.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcC-CCCHHHHHHHHHHHh
Q 022144 60 PQVEHRPFTPEEDETILRAHARFG-NKWATIARLLS-GRTDNAIKNHWNSTL 109 (302)
Q Consensus 60 p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~-gRT~~q~knRw~~~L 109 (302)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346688999999999999999999 89999999999 999999999998765
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.25 E-value=1.5e-15 Score=119.37 Aligned_cols=57 Identities=25% Similarity=0.357 Sum_probs=53.6
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 56 NQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 56 n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
..++|.+++++||+|||++|+++|.+||++|..||.+|+|||++||++||+.++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 356788999999999999999999999999999999999999999999999998875
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.50 E-value=2.8e-15 Score=113.03 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCC
Q 022144 6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEH 64 (302)
Q Consensus 6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk 64 (302)
.++++.+++||+|||++|+++|++||. +|..||.+|++||..||+.||+++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999996 8999999999999999999999998776555
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.49 E-value=1e-14 Score=118.13 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=69.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhC----CCCCcccccccccccC-----CCCCCCCCCChHHHHH-
Q 022144 5 KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSI----PGRSGKSCRLRWCNQL-----SPQVEHRPFTPEEDET- 74 (302)
Q Consensus 5 ~~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~l----p~Rt~kqCr~Rw~n~L-----~p~~kk~~WT~EED~~- 74 (302)
....++.+++||+|||+.|+++|++||.++|..|++.+ ++||..+|++||.+++ +|.++++.-+++|--.
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 45678999999999999999999999998999999865 8999999999999998 7899999888877765
Q ss_pred HHHHHHhcCC
Q 022144 75 ILRAHARFGN 84 (302)
Q Consensus 75 Ll~lv~~~Gn 84 (302)
++++++.+|+
T Consensus 86 v~~~~~~~~~ 95 (105)
T 2aje_A 86 VLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8999888774
No 39
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.48 E-value=2.4e-14 Score=111.35 Aligned_cols=69 Identities=26% Similarity=0.416 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhh----CCCCCcccccccccccC-----CCCCCC-CCCChHHHHHHHHHHHh
Q 022144 13 GPWSPEEDEALQRLVQNYGPRNWSLISKS----IPGRSGKSCRLRWCNQL-----SPQVEH-RPFTPEEDETILRAHAR 81 (302)
Q Consensus 13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~----lp~Rt~kqCr~Rw~n~L-----~p~~kk-~~WT~EED~~Ll~lv~~ 81 (302)
++||+|||+.|+++|++||.++|..|++. |++||+.+|++||.|+| +|.+++ .+..++...+++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999986 89999999999999987 677665 47788888999999875
No 40
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.44 E-value=5.3e-14 Score=106.99 Aligned_cols=55 Identities=27% Similarity=0.420 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCC
Q 022144 6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE 63 (302)
Q Consensus 6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~k 63 (302)
-++++.||+||+|||++|+++|++||.+ |..||+.| |||+.||+.||.. |....+
T Consensus 17 ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 17 QGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp --CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence 4789999999999999999999999965 99999999 9999999999974 544443
No 41
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.43 E-value=1.4e-13 Score=113.98 Aligned_cols=66 Identities=30% Similarity=0.504 Sum_probs=59.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCCccccccc
Q 022144 59 SPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDA 124 (302)
Q Consensus 59 ~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~~~~ 124 (302)
.+..++++||+|||++|+++|.+||.+|..||..|+|||..||+.||+++|...+....++..+|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~ 71 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDA 71 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHH
Confidence 457889999999999999999999999999999999999999999999999998888777655544
No 42
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.43 E-value=1.7e-13 Score=104.23 Aligned_cols=54 Identities=13% Similarity=0.319 Sum_probs=49.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcC----CcHHHHhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144 60 PQVEHRPFTPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHWNSTLKRKC 113 (302)
Q Consensus 60 p~~kk~~WT~EED~~Ll~lv~~~G----nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~ 113 (302)
+...+++||.|||.+|++++++|| ++|.+||++|+|||.++|++||+.+++...
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence 456788999999999999999999 789999999999999999999998876543
No 43
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.41 E-value=2.1e-13 Score=109.05 Aligned_cols=63 Identities=25% Similarity=0.592 Sum_probs=56.4
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCC-cHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCCcccccc
Q 022144 61 QVEHRPFTPEEDETILRAHARFGN-KWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVD 123 (302)
Q Consensus 61 ~~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~~~ 123 (302)
.+++++||+|||++|+++|.+||. +|..||.+|+|||..||++||.++|...+....++..+|
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd 64 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 64 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHH
Confidence 368899999999999999999996 799999999999999999999999998887776665544
No 44
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.40 E-value=8.7e-14 Score=115.84 Aligned_cols=82 Identities=32% Similarity=0.546 Sum_probs=60.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcH
Q 022144 7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKW 86 (302)
Q Consensus 7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW 86 (302)
++.+.+|+||+|||++|+++|.+|| .+|..||+.|+|||..+|+.||+++|++.+..+.|+.+- +......+.+|
T Consensus 49 ~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~~~ 123 (131)
T 3zqc_A 49 DPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKRKA 123 (131)
T ss_dssp STTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC-----
T ss_pred CccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhhhh
Confidence 5788999999999999999999999 569999999999999999999999999999999988763 11112234668
Q ss_pred HHHhhhc
Q 022144 87 ATIARLL 93 (302)
Q Consensus 87 ~~IA~~l 93 (302)
+.|++.|
T Consensus 124 ~~i~k~~ 130 (131)
T 3zqc_A 124 ADVPKKL 130 (131)
T ss_dssp -------
T ss_pred hhcchhc
Confidence 8887765
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.39 E-value=1.8e-13 Score=105.47 Aligned_cols=51 Identities=18% Similarity=0.413 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccccc
Q 022144 6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQ 57 (302)
Q Consensus 6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~ 57 (302)
+.....+++||+|||++|+++|++|| .+|.+||++|++||..||+.||.++
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 34566789999999999999999999 8899999999999999999999998
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.39 E-value=2.9e-13 Score=104.22 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=44.9
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHH
Q 022144 61 QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNST 108 (302)
Q Consensus 61 ~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~ 108 (302)
...+++||+|||++|++++.+||++|.+||++|++||..||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999754
No 47
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.34 E-value=9.9e-13 Score=105.83 Aligned_cols=61 Identities=23% Similarity=0.431 Sum_probs=54.6
Q ss_pred CCCCChHHHHHHHHHHHhcCC-cHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCCccccccc
Q 022144 64 HRPFTPEEDETILRAHARFGN-KWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDA 124 (302)
Q Consensus 64 k~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~~~~ 124 (302)
++.||+|||++|+++|.+||. +|..||.+|+|||..||+.||.++|...+....++..+|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~ 62 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDM 62 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHH
Confidence 579999999999999999995 8999999999999999999999999988877766655443
No 48
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=1.8e-13 Score=103.97 Aligned_cols=55 Identities=24% Similarity=0.560 Sum_probs=49.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhC---CCCHHHHHhhCCCCCcccccccccccCC
Q 022144 5 KKDVDRIKGPWSPEEDEALQRLVQNYG---PRNWSLISKSIPGRSGKSCRLRWCNQLS 59 (302)
Q Consensus 5 ~~~~~~~Kg~WT~EED~~L~~lV~k~G---~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~ 59 (302)
+.++...+++||+|||++|+++|++|| +.+|.+||.+|+|||.+||+.||++++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456778899999999999999999999 3579999999999999999999998764
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.33 E-value=1.5e-12 Score=101.28 Aligned_cols=49 Identities=24% Similarity=0.544 Sum_probs=45.4
Q ss_pred CCCChHHHHHHHHHHHhcCC-cHHHHhhh----cCCCCHHHHHHHHHHHhhhhc
Q 022144 65 RPFTPEEDETILRAHARFGN-KWATIARL----LSGRTDNAIKNHWNSTLKRKC 113 (302)
Q Consensus 65 ~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~----l~gRT~~q~knRw~~~Lkrk~ 113 (302)
++||+|||+.|+++|++||+ +|+.|++. |+|||+++||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999996 99999995 899999999999999998653
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.33 E-value=1.5e-12 Score=95.84 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=47.2
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCcHHHHh---hhcCCCCHHHHHHHHHHHhhhh
Q 022144 62 VEHRPFTPEEDETILRAHARFGNKWATIA---RLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 62 ~kk~~WT~EED~~Ll~lv~~~GnkW~~IA---~~l~gRT~~q~knRw~~~Lkrk 112 (302)
.++.+||+|||+.|+++|++||.+|..|+ .+|++||..+||+||+++.++.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 46789999999999999999999999999 4789999999999999988765
No 51
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.99 E-value=1.5e-13 Score=107.88 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=50.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCC
Q 022144 5 KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60 (302)
Q Consensus 5 ~~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p 60 (302)
...+.+.+|+||+|||++|+++|.+||. +|..||..|+|||..||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 4467889999999999999999999996 799999999999999999999998863
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.29 E-value=4.2e-12 Score=102.75 Aligned_cols=56 Identities=21% Similarity=0.454 Sum_probs=49.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCC-cHHHHhhhc----CCCCHHHHHHHHHHHhhhhcc
Q 022144 59 SPQVEHRPFTPEEDETILRAHARFGN-KWATIARLL----SGRTDNAIKNHWNSTLKRKCS 114 (302)
Q Consensus 59 ~p~~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l----~gRT~~q~knRw~~~Lkrk~~ 114 (302)
....++++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++....
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence 34678899999999999999999996 999999854 899999999999999987643
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.29 E-value=2.9e-12 Score=106.12 Aligned_cols=56 Identities=25% Similarity=0.506 Sum_probs=50.9
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHhcCC-cHHHHhhh----cCCCCHHHHHHHHHHHhhhh
Q 022144 57 QLSPQVEHRPFTPEEDETILRAHARFGN-KWATIARL----LSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 57 ~L~p~~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~----l~gRT~~q~knRw~~~Lkrk 112 (302)
-+.+..++++||+|||+.|+++|++||+ +|+.|++. |+|||+++||+||+++++..
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 3566788999999999999999999996 99999997 48999999999999999843
No 54
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.28 E-value=2.6e-12 Score=117.11 Aligned_cols=57 Identities=25% Similarity=0.429 Sum_probs=50.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCCc------HHHHhhhcCCCCHHHHHHHHHHHhhhhccCC
Q 022144 60 PQVEHRPFTPEEDETILRAHARFGNK------WATIARLLSGRTDNAIKNHWNSTLKRKCSSM 116 (302)
Q Consensus 60 p~~kk~~WT~EED~~Ll~lv~~~Gnk------W~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~ 116 (302)
+.+++++||+|||++|+++|++||++ |..||++|+|||+++||+||+.+|++++...
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v 66 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV 66 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc
Confidence 35788999999999999999999875 9999999999999999999999999998743
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.24 E-value=1.1e-11 Score=102.75 Aligned_cols=55 Identities=24% Similarity=0.451 Sum_probs=49.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCC-cHHHHhhhc----CCCCHHHHHHHHHHHhhhhc
Q 022144 59 SPQVEHRPFTPEEDETILRAHARFGN-KWATIARLL----SGRTDNAIKNHWNSTLKRKC 113 (302)
Q Consensus 59 ~p~~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l----~gRT~~q~knRw~~~Lkrk~ 113 (302)
....++++||.|||+.|+++|++||. +|+.|++.+ +|||+.+||+||+++++...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 44567899999999999999999996 999999863 89999999999999997653
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.23 E-value=1.1e-11 Score=98.24 Aligned_cols=50 Identities=30% Similarity=0.646 Sum_probs=45.7
Q ss_pred CCCCCChHHHHHHHHHHHhcC----CcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 63 EHRPFTPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 63 kk~~WT~EED~~Ll~lv~~~G----nkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
.+++||.|||++|++++++|| ++|.+||++|+|||.++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 78999999999999999999999987664
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.09 E-value=2e-11 Score=96.74 Aligned_cols=48 Identities=23% Similarity=0.614 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCHHHHHhhCCCCCcccccccccccC
Q 022144 11 IKGPWSPEEDEALQRLVQNYG---PRNWSLISKSIPGRSGKSCRLRWCNQL 58 (302)
Q Consensus 11 ~Kg~WT~EED~~L~~lV~k~G---~~nW~~IA~~lp~Rt~kqCr~Rw~n~L 58 (302)
.+++||.|||++|.+++.+|+ +..|.+||..|+|||.++|+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 468999999999999999997 456999999999999999999998864
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=2.2e-10 Score=83.67 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=44.6
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhh
Q 022144 62 VEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLK 110 (302)
Q Consensus 62 ~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lk 110 (302)
....+||+||++++++++.+||++|..||.+|++||..+|.++|+...+
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 3457999999999999999999999999999999999999999976544
No 59
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.99 E-value=4.7e-10 Score=101.47 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=56.6
Q ss_pred CHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 34 NWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 34 nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
+|..+-..|..+.... ..+++.--........||+||+.++++++++||++|..||++|++||..||+++|+...++
T Consensus 104 ~~kQ~~~~L~~~~~~~-Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 104 NIKQTNSALKEKLDGG-IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHHHHHSTTT-TGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhh-cccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4655555443333322 2244332222344679999999999999999999999999999999999999999977665
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.94 E-value=1.8e-09 Score=81.65 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=46.0
Q ss_pred CCCCCCCChHHHHHHHHHHHhcC----CcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 61 QVEHRPFTPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 61 ~~kk~~WT~EED~~Ll~lv~~~G----nkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
..+.+.||.|||++|.+++++|+ ++|.+||.++ |||..+|++||+.+++..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 45678999999999999999997 6899999998 999999999999887664
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=6.6e-10 Score=81.16 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccC
Q 022144 6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQL 58 (302)
Q Consensus 6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L 58 (302)
...+...++||+||+++|.+++.+|| .+|..||..|++||..+|..+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 34456778999999999999999999 68999999999999999999986543
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.91 E-value=4.3e-10 Score=82.73 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHH---hhCCCCCcccccccccccCC
Q 022144 9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLIS---KSIPGRSGKSCRLRWCNQLS 59 (302)
Q Consensus 9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA---~~lp~Rt~kqCr~Rw~n~L~ 59 (302)
.+.+.+||+|||+.|++.|++||. +|..|+ .++++||...+.+||.++..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 468899999999999999999996 899999 46799999999999988654
No 63
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.90 E-value=1.4e-09 Score=86.19 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=56.9
Q ss_pred ccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhc-----CCCCHHHHHHHHHHHhhhhcc
Q 022144 48 KSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLL-----SGRTDNAIKNHWNSTLKRKCS 114 (302)
Q Consensus 48 kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l-----~gRT~~q~knRw~~~Lkrk~~ 114 (302)
.=+.++|.++|.+ .+||.||++.|++|+++||.+|..|+..+ ++||..+||+||..+.++.+.
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4577899999976 89999999999999999999999999988 589999999999998887654
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.82 E-value=2.7e-09 Score=105.91 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=42.5
Q ss_pred CCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhh
Q 022144 65 RPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLK 110 (302)
Q Consensus 65 ~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lk 110 (302)
..||+||..++++++.+||.+|..||+.+..||..||+++|....+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999975433
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.69 E-value=5.2e-09 Score=79.15 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=43.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC---CCCHHHHHhhCCCCCcccccccccccCC
Q 022144 9 DRIKGPWSPEEDEALQRLVQNYG---PRNWSLISKSIPGRSGKSCRLRWCNQLS 59 (302)
Q Consensus 9 ~~~Kg~WT~EED~~L~~lV~k~G---~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~ 59 (302)
...++.||.|||++|.+++.+|+ ++.|.+||..+ |||.++|+.||+.+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 45578899999999999999997 45699999998 9999999999987643
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.63 E-value=7.2e-08 Score=73.12 Aligned_cols=50 Identities=14% Similarity=0.289 Sum_probs=44.8
Q ss_pred CCCCCChHHHHHHHHHHHhcC----CcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 63 EHRPFTPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 63 kk~~WT~EED~~Ll~lv~~~G----nkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
....||.+|+.+|.++++.|+ ++|.+||..|+|||..+|+.||..+++.+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 346899999999999999998 47999999999999999999999886554
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.50 E-value=3.1e-08 Score=72.11 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCHHHHHh-hCCCCCcccccccccccCC
Q 022144 12 KGPWSPEEDEALQRLVQNY--------GPRNWSLISK-SIPGRSGKSCRLRWCNQLS 59 (302)
Q Consensus 12 Kg~WT~EED~~L~~lV~k~--------G~~nW~~IA~-~lp~Rt~kqCr~Rw~n~L~ 59 (302)
|.+||+|||+.|.++|.+| |..-|..+++ .++++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 6789999999999999999 5445999999 7999999999999999875
No 68
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.49 E-value=6.1e-08 Score=87.73 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=46.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCC
Q 022144 9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLS 59 (302)
Q Consensus 9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~ 59 (302)
.+..++||+||+++|++++.+|| ++|..||+.|++||..||+.+|+++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 46678999999999999999999 689999999999999999999988764
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.47 E-value=8.9e-08 Score=72.61 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CCHHHHHhhCCCCCcccccccccccCCC
Q 022144 13 GPWSPEEDEALQRLVQNYGP---RNWSLISKSIPGRSGKSCRLRWCNQLSP 60 (302)
Q Consensus 13 g~WT~EED~~L~~lV~k~G~---~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p 60 (302)
..||.+||++|.+++..|+. ++|.+||..|++||..+|+.||..++..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 57999999999999999964 5699999999999999999999887653
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.46 E-value=2.1e-07 Score=67.71 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHHHhc--------CCc-HHHHhh-hcCCCCHHHHHHHHHHHhh
Q 022144 64 HRPFTPEEDETILRAHARF--------GNK-WATIAR-LLSGRTDNAIKNHWNSTLK 110 (302)
Q Consensus 64 k~~WT~EED~~Ll~lv~~~--------Gnk-W~~IA~-~l~gRT~~q~knRw~~~Lk 110 (302)
+.+||+|||+.|++.|++| ||+ |..+++ .++++|-.++++||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 8999999999999987764
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.45 E-value=4e-07 Score=85.88 Aligned_cols=101 Identities=16% Similarity=0.291 Sum_probs=81.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccc-------cccccC--------------------------
Q 022144 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRL-------RWCNQL-------------------------- 58 (302)
Q Consensus 12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~-------Rw~n~L-------------------------- 58 (302)
-+.||..|...++.++.+||..+|..||..|.++|...++. ||..+-
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999998865532 221100
Q ss_pred -----------------CCCCCCCCCChHHHHHHHHHHHhcC----CcHHHHh---h---------hcCCCCHHHHHHHH
Q 022144 59 -----------------SPQVEHRPFTPEEDETILRAHARFG----NKWATIA---R---------LLSGRTDNAIKNHW 105 (302)
Q Consensus 59 -----------------~p~~kk~~WT~EED~~Ll~lv~~~G----nkW~~IA---~---------~l~gRT~~q~knRw 105 (302)
.+..+...||+|||+.|+-++.+|| +.|..|. + +|..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0123456899999999999999999 4799996 2 56789999999999
Q ss_pred HHHhhhh
Q 022144 106 NSTLKRK 112 (302)
Q Consensus 106 ~~~Lkrk 112 (302)
+.+++-.
T Consensus 270 ~tLi~~i 276 (304)
T 1ofc_X 270 NTLITLI 276 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.5e-06 Score=63.79 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=44.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCCcHHHHhh-hcCCCCHHHHHHHHHH
Q 022144 60 PQVEHRPFTPEEDETILRAHARFGNKWATIAR-LLSGRTDNAIKNHWNS 107 (302)
Q Consensus 60 p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~-~l~gRT~~q~knRw~~ 107 (302)
|.++...||+||..++.+++.+||.+|..|++ .|++||..+|...|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 56778899999999999999999999999999 5999999999998863
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.03 E-value=9.9e-07 Score=66.77 Aligned_cols=43 Identities=26% Similarity=0.509 Sum_probs=38.9
Q ss_pred CCCCChHHHHHHHHHHHhcCC----cHHHHhhhcCCCCHHHHHHHHH
Q 022144 64 HRPFTPEEDETILRAHARFGN----KWATIARLLSGRTDNAIKNHWN 106 (302)
Q Consensus 64 k~~WT~EED~~Ll~lv~~~Gn----kW~~IA~~l~gRT~~q~knRw~ 106 (302)
...||.||+++|.++.+.|.. +|.+||..|||||..+|+.||.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999985
No 74
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.97 E-value=3.4e-05 Score=60.58 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=43.1
Q ss_pred CCCChHHHHHHHHHHHhcCC---cHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 65 RPFTPEEDETILRAHARFGN---KWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 65 ~~WT~EED~~Ll~lv~~~Gn---kW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
-.||.|||+.||...++-|. .|+.||+.|.+|+.+||++||+.+++-
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 47999999999999999995 799999999999999999999987653
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.96 E-value=9.5e-07 Score=66.86 Aligned_cols=44 Identities=16% Similarity=0.395 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHhhCCCCCccccccccc
Q 022144 12 KGPWSPEEDEALQRLVQNYGP---RNWSLISKSIPGRSGKSCRLRWC 55 (302)
Q Consensus 12 Kg~WT~EED~~L~~lV~k~G~---~nW~~IA~~lp~Rt~kqCr~Rw~ 55 (302)
...||.||+++|.+++.+|.. ..|.+||..|+|||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999954 36999999999999999999985
No 76
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=7.2e-06 Score=60.05 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=42.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHh-hCCCCCccccccccc
Q 022144 7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISK-SIPGRSGKSCRLRWC 55 (302)
Q Consensus 7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~-~lp~Rt~kqCr~Rw~ 55 (302)
.+......||+||-+++.+.+.+|| ++|..|++ .|++|+..+|..-|.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHh
Confidence 4667778999999999999999999 58999999 589999999987664
No 77
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.90 E-value=2.3e-05 Score=58.57 Aligned_cols=44 Identities=14% Similarity=0.251 Sum_probs=41.1
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcHHHHhh-hcCCCCHHHHHHHHH
Q 022144 63 EHRPFTPEEDETILRAHARFGNKWATIAR-LLSGRTDNAIKNHWN 106 (302)
Q Consensus 63 kk~~WT~EED~~Ll~lv~~~GnkW~~IA~-~l~gRT~~q~knRw~ 106 (302)
....||+||..++.+++.+||.+|..|++ .|++||..+|...|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 34689999999999999999999999999 699999999999987
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.87 E-value=2.1e-05 Score=62.09 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=41.8
Q ss_pred CCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHH
Q 022144 64 HRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNST 108 (302)
Q Consensus 64 k~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~ 108 (302)
...||+||.+++.++...||.+|..|+..|++||..+|..+|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999988643
No 79
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.07 E-value=2.1e-06 Score=64.02 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHHHhcCC---cHHHHhhhcCCCCHHHHHHHHHHHhh
Q 022144 66 PFTPEEDETILRAHARFGN---KWATIARLLSGRTDNAIKNHWNSTLK 110 (302)
Q Consensus 66 ~WT~EED~~Ll~lv~~~Gn---kW~~IA~~l~gRT~~q~knRw~~~Lk 110 (302)
.||.|||+.|+..+++-|. .|+.||..| +|+++||++||+.+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 7999999999999999996 799999999 9999999999998764
No 80
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.77 E-value=4.8e-05 Score=60.05 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=45.7
Q ss_pred CCCChHHHHHHHHHHHhcCCcHHHHhhhcC-----CCCHHHHHHHHHHHhhhhcc
Q 022144 65 RPFTPEEDETILRAHARFGNKWATIARLLS-----GRTDNAIKNHWNSTLKRKCS 114 (302)
Q Consensus 65 ~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~-----gRT~~q~knRw~~~Lkrk~~ 114 (302)
..||.||...|++++++|+-+|.-|+..+. +||-.++|.||..+.++.+.
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999998764 79999999999999887654
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.65 E-value=2.3e-05 Score=77.96 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=43.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccccc
Q 022144 9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQ 57 (302)
Q Consensus 9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~ 57 (302)
.+...+||.||-+++++++.+|| ++|..||..|.+||..||+..|.++
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35678999999999999999999 6899999999999999999988654
No 82
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.56 E-value=0.00021 Score=68.91 Aligned_cols=103 Identities=19% Similarity=0.310 Sum_probs=80.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC-CCCccccc-------cccccc------C--------------------
Q 022144 13 GPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCR-------LRWCNQ------L-------------------- 58 (302)
Q Consensus 13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~lp-~Rt~kqCr-------~Rw~n~------L-------------------- 58 (302)
+.||.-|=..++.++.+||..+...||..|. ++|...++ .||..+ +
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999989999999997 88775543 122111 0
Q ss_pred ------------------CC-CCCCCCCChHHHHHHHHHHHhcC----CcHHHHhhh------------cCCCCHHHHHH
Q 022144 59 ------------------SP-QVEHRPFTPEEDETILRAHARFG----NKWATIARL------------LSGRTDNAIKN 103 (302)
Q Consensus 59 ------------------~p-~~kk~~WT~EED~~Ll~lv~~~G----nkW~~IA~~------------l~gRT~~q~kn 103 (302)
.+ +.+...||++||+.||-++.+|| +.|.+|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 00 11456899999999999999999 569999432 46799999999
Q ss_pred HHHHHhhhhccC
Q 022144 104 HWNSTLKRKCSS 115 (302)
Q Consensus 104 Rw~~~Lkrk~~~ 115 (302)
|.+.+++-..+.
T Consensus 284 Rc~tLi~~IeKE 295 (374)
T 2y9y_A 284 RGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999998765443
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.54 E-value=4.4e-05 Score=60.30 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhC-----CCCCcccccccccccC
Q 022144 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSI-----PGRSGKSCRLRWCNQL 58 (302)
Q Consensus 12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~l-----p~Rt~kqCr~Rw~n~L 58 (302)
..+||.||++.|.+++++|+.+ |..|+..+ ++||..+++.||..+.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999965 99999999 5899999999997643
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.45 E-value=6.9e-05 Score=59.08 Aligned_cols=43 Identities=21% Similarity=0.424 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccc
Q 022144 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWC 55 (302)
Q Consensus 12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~ 55 (302)
...||+||.+++.+.+.+|| ++|.+|+..|++||..+|.+-|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHh
Confidence 46799999999999999999 68999999999999999987664
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.44 E-value=0.0001 Score=54.99 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=40.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHh-hCCCCCccccccccc
Q 022144 10 RIKGPWSPEEDEALQRLVQNYGPRNWSLISK-SIPGRSGKSCRLRWC 55 (302)
Q Consensus 10 ~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~-~lp~Rt~kqCr~Rw~ 55 (302)
.....||+||-+++.+.+.+|| .+|..|++ .|++|+..+|..-|.
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4556899999999999999999 58999999 599999999987664
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.43 E-value=0.0006 Score=59.89 Aligned_cols=102 Identities=14% Similarity=0.191 Sum_probs=70.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC--CCCHHHHHhh--CCCCCcccccc-------c-------cc----------------
Q 022144 10 RIKGPWSPEEDEALQRLVQNYG--PRNWSLISKS--IPGRSGKSCRL-------R-------WC---------------- 55 (302)
Q Consensus 10 ~~Kg~WT~EED~~L~~lV~k~G--~~nW~~IA~~--lp~Rt~kqCr~-------R-------w~---------------- 55 (302)
-....||..|-..|++++.+|| ...|..|+.. |.+++...+.. + +.
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP 84 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence 3456799999999999999999 4679999864 56776642211 0 00
Q ss_pred ------------------------------------cc-CC----CCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhh--
Q 022144 56 ------------------------------------NQ-LS----PQVEHRPFTPEEDETILRAHARFG-NKWATIAR-- 91 (302)
Q Consensus 56 ------------------------------------n~-L~----p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~-- 91 (302)
++ +. +......||.+||..|+..+.+|| ++|..|..
T Consensus 85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 00 00 111123699999999999999999 99999965
Q ss_pred h--c----------CCCCHHHHHHHHHHHhhh
Q 022144 92 L--L----------SGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 92 ~--l----------~gRT~~q~knRw~~~Lkr 111 (302)
. | ..++...|..|...+|+-
T Consensus 165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred hcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 2 1 124567899998877654
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.15 E-value=0.00039 Score=53.22 Aligned_cols=49 Identities=14% Similarity=0.407 Sum_probs=40.5
Q ss_pred CCCCChHHHHHHHHHHHhcC----------CcHHHHhhhcC----CCCHHHHHHHHHHHhhhh
Q 022144 64 HRPFTPEEDETILRAHARFG----------NKWATIARLLS----GRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 64 k~~WT~EED~~Ll~lv~~~G----------nkW~~IA~~l~----gRT~~q~knRw~~~Lkrk 112 (302)
...||.+|-.+||++...+. ..|..||..|. .||+.||+++|.++.+.-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999997532 25999998763 699999999999877663
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.93 E-value=0.00017 Score=55.34 Aligned_cols=48 Identities=25% Similarity=0.464 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHHh------CCC---CHHHHHhhC----CCCCcccccccccccC
Q 022144 11 IKGPWSPEEDEALQRLVQNY------GPR---NWSLISKSI----PGRSGKSCRLRWCNQL 58 (302)
Q Consensus 11 ~Kg~WT~EED~~L~~lV~k~------G~~---nW~~IA~~l----p~Rt~kqCr~Rw~n~L 58 (302)
....||.+|-.+|+++...+ +.. .|..||..| -+||+.||+.+|.|+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999764 111 499999987 4799999999998754
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.82 E-value=0.00021 Score=53.29 Aligned_cols=46 Identities=13% Similarity=0.372 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCHHHHHhhCCCCCcccccccccccCC
Q 022144 13 GPWSPEEDEALQRLVQNYGP--RNWSLISKSIPGRSGKSCRLRWCNQLS 59 (302)
Q Consensus 13 g~WT~EED~~L~~lV~k~G~--~nW~~IA~~lp~Rt~kqCr~Rw~n~L~ 59 (302)
-.||.|||..|+..+++.|+ .-|..||+.| +|++.|+.+||+..++
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 36999999999999999986 3599999999 9999999999987653
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.59 E-value=0.00068 Score=53.20 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCHHHHHhhCCCCCcccccccccc
Q 022144 13 GPWSPEEDEALQRLVQNYGP--RNWSLISKSIPGRSGKSCRLRWCN 56 (302)
Q Consensus 13 g~WT~EED~~L~~lV~k~G~--~nW~~IA~~lp~Rt~kqCr~Rw~n 56 (302)
--||.|||..|+...++.|+ ..|..||+.|.+|+..|+.+||+.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE 79 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHH
Confidence 47999999999999999986 359999999999999999999975
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.79 E-value=0.027 Score=41.39 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=40.9
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCc---HHHHhhhc--CCCCHHHHHHHHHHHh
Q 022144 62 VEHRPFTPEEDETILRAHARFGNK---WATIARLL--SGRTDNAIKNHWNSTL 109 (302)
Q Consensus 62 ~kk~~WT~EED~~Ll~lv~~~Gnk---W~~IA~~l--~gRT~~q~knRw~~~L 109 (302)
..+-.||+|..+.+++++.++|.. |..|.+.+ +|.|..+|+.|.+.+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999954 78998875 5899999999987653
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.21 E-value=0.011 Score=46.42 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC-----CCCccccccccccc
Q 022144 13 GPWSPEEDEALQRLVQNYGPRNWSLISKSIP-----GRSGKSCRLRWCNQ 57 (302)
Q Consensus 13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~lp-----~Rt~kqCr~Rw~n~ 57 (302)
..||.||.+.|.+++++|..+ |--|+.... .||..+.++||..+
T Consensus 31 ~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 579999999999999999965 999998873 68888999998764
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.12 E-value=0.066 Score=50.35 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=41.9
Q ss_pred CCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 64 HRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 64 k~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
.+.||..|...++.++.+|| ++|..||..|.|+|...|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 35799999999999999999 6899999999999999997766655544
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.55 E-value=0.056 Score=39.68 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=39.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC--HHHHHhhC--CCCCccccccccccc
Q 022144 9 DRIKGPWSPEEDEALQRLVQNYGPRN--WSLISKSI--PGRSGKSCRLRWCNQ 57 (302)
Q Consensus 9 ~~~Kg~WT~EED~~L~~lV~k~G~~n--W~~IA~~l--p~Rt~kqCr~Rw~n~ 57 (302)
...+-.||+|..+.+.++|++.|... +..|.+.| +|.|..++..|.++|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45677899999999999999999543 88998887 677888887665543
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.78 E-value=0.16 Score=44.29 Aligned_cols=50 Identities=16% Similarity=0.304 Sum_probs=41.1
Q ss_pred CCCCCCChHHHHHHHHHHHhcC---CcHHHHhh--hcCCCCHHHHHHHHHHHhhh
Q 022144 62 VEHRPFTPEEDETILRAHARFG---NKWATIAR--LLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 62 ~kk~~WT~EED~~Ll~lv~~~G---nkW~~IA~--~l~gRT~~q~knRw~~~Lkr 111 (302)
-....||..|-..|+.++.+|| .+|..|+. .|.++|...|+..+..++..
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999 58999987 48899999999877665544
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.02 E-value=0.17 Score=46.79 Aligned_cols=28 Identities=39% Similarity=0.673 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 022144 13 GPWSPEEDEALQRLVQNYGPRNWSLISK 40 (302)
Q Consensus 13 g~WT~EED~~L~~lV~k~G~~nW~~IA~ 40 (302)
..|+.+||..|+..|-+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999999999975
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=82.21 E-value=2.4 Score=39.05 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=41.8
Q ss_pred CCCCChHHHHHHHHHHHhcC---CcHHHHhh--hcCCCCHHHHHHHHHHHhhh
Q 022144 64 HRPFTPEEDETILRAHARFG---NKWATIAR--LLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 64 k~~WT~EED~~Ll~lv~~~G---nkW~~IA~--~l~gRT~~q~knRw~~~Lkr 111 (302)
++.||+.|-+.|++.+.+|| .+|..|+. .|+.++...++.-|+.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999986 68899999999888766543
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=77.70 E-value=4.7 Score=27.72 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 70 EEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 70 EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
+.++.++.++...|-.+.+||..+ |-+...|+++....+++.
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 555667777778899999999999 889999999887665543
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=74.79 E-value=6.2 Score=27.93 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHh----cCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 69 PEEDETILRAHAR----FGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 69 ~EED~~Ll~lv~~----~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
++.++.++.+..- .|..|.+||..+ |-+...|+.+....+++.
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3445556666654 678999999999 999999999887666554
No 100
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=73.81 E-value=6 Score=38.08 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=42.1
Q ss_pred CCCChHHHHHHHHHHHhcC-CcHHHHhhhcC-CCCHHHHHHHHHHHhhhhccCC
Q 022144 65 RPFTPEEDETILRAHARFG-NKWATIARLLS-GRTDNAIKNHWNSTLKRKCSSM 116 (302)
Q Consensus 65 ~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~-gRT~~q~knRw~~~Lkrk~~~~ 116 (302)
+.||.-|=..++.++.+|| ++-..||..|. |+|...|+ +|...+-.++...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei 176 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERI 176 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSC
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhh
Confidence 4788888889999999999 66999999997 99999999 5666665566554
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=71.62 E-value=6.6 Score=27.35 Aligned_cols=42 Identities=12% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHHHHHH----hcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 70 EEDETILRAHA----RFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 70 EED~~Ll~lv~----~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
+.++.++.+.. ..|..+.+||..+ |-+...|+.+....+++.
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44555555554 3578899999999 999999999988776654
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=68.83 E-value=4.6 Score=32.11 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=30.0
Q ss_pred HHHHHHHhcCC--------cHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 74 TILRAHARFGN--------KWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 74 ~Ll~lv~~~Gn--------kW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
.|..+|.+.|+ +|..|+..|.--....++.+|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 37788888873 699999988555588999999987744
No 103
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=68.13 E-value=6.1 Score=33.91 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCHHHHHHH--------HHHHHHhCCCCHHHHHh
Q 022144 6 KDVDRIKGPWSPEEDEAL--------QRLVQNYGPRNWSLISK 40 (302)
Q Consensus 6 ~~~~~~Kg~WT~EED~~L--------~~lV~k~G~~nW~~IA~ 40 (302)
.-|...+|-||.|+|+.| .++++||| |..|..
T Consensus 108 giP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~ 147 (168)
T 3cz6_A 108 NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEM 147 (168)
T ss_dssp SSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHH
T ss_pred CCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 346788999999999987 47888888 777654
No 104
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=65.11 E-value=12 Score=27.61 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 70 EEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 70 EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
+.++.++.++...|-.-..||..| |-+...|+.|....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456667777777888999999999 99999999988766544
No 105
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=62.62 E-value=11 Score=29.20 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=28.1
Q ss_pred HHHHHHHhcC--------CcHHHHhhhcCCCC----HHHHHHHHHHHhhh
Q 022144 74 TILRAHARFG--------NKWATIARLLSGRT----DNAIKNHWNSTLKR 111 (302)
Q Consensus 74 ~Ll~lv~~~G--------nkW~~IA~~l~gRT----~~q~knRw~~~Lkr 111 (302)
.|..+|.+.| +.|..|+..|.--. ...+|++|.++|-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4777777777 36999999884332 57889999887754
No 106
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=61.27 E-value=6.7 Score=31.70 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=29.7
Q ss_pred HHHHHHhcCC--------cHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 75 ILRAHARFGN--------KWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 75 Ll~lv~~~Gn--------kW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
|..+|.+.|+ +|..|+..|.--....+++.|.++|-.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 7777777773 599999987555589999999988865
No 107
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=60.79 E-value=10 Score=30.12 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=28.0
Q ss_pred HHHHHHHhcC--------CcHHHHhhhcCCCC----HHHHHHHHHHHhhh
Q 022144 74 TILRAHARFG--------NKWATIARLLSGRT----DNAIKNHWNSTLKR 111 (302)
Q Consensus 74 ~Ll~lv~~~G--------nkW~~IA~~l~gRT----~~q~knRw~~~Lkr 111 (302)
.|..+|.+.| ++|..|+..|.--. ...+|.+|..+|-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4777788887 36999999874322 56889999877643
No 108
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=58.84 E-value=13 Score=29.91 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=28.3
Q ss_pred HHHHHHHhcC--------CcHHHHhhhcCCCC----HHHHHHHHHHHhhh
Q 022144 74 TILRAHARFG--------NKWATIARLLSGRT----DNAIKNHWNSTLKR 111 (302)
Q Consensus 74 ~Ll~lv~~~G--------nkW~~IA~~l~gRT----~~q~knRw~~~Lkr 111 (302)
.|..+|.++| ++|.+|+..|.--+ ...+|++|.++|-.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4777777887 36999999874332 46889999888755
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.41 E-value=13 Score=29.81 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=27.7
Q ss_pred HHHHHHHhcC--------CcHHHHhhhcCCCC----HHHHHHHHHHHhhh
Q 022144 74 TILRAHARFG--------NKWATIARLLSGRT----DNAIKNHWNSTLKR 111 (302)
Q Consensus 74 ~Ll~lv~~~G--------nkW~~IA~~l~gRT----~~q~knRw~~~Lkr 111 (302)
.|..+|.++| ++|.+|+..|.--. ...+|++|.++|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4777777877 36999999884322 46889999887754
No 110
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=56.17 E-value=22 Score=25.97 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHh----cCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 70 EEDETILRAHAR----FGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 70 EED~~Ll~lv~~----~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
+.++.++.+..- .|-.+..||..+ |-+...|+.+....+++.
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 445556666554 578899999999 999999999887666554
No 111
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=55.15 E-value=24 Score=24.68 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 67 FTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 67 WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
+|+.|-+ ++.++ ..|....+||..+ |-+...|+.+....+++-
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4555544 44555 6788899999999 889999999887766554
No 112
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=54.40 E-value=30 Score=25.83 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=36.1
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 63 EHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 63 kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
.....|+.|-+.|.-+ . .|..-.+||..| |-+...|++|...++++.
T Consensus 26 ~~~~Lt~rE~~Vl~l~-~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEV-E-KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHH-H-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHH-H-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4456888777766544 4 888899999999 999999999998877664
No 113
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=52.32 E-value=8.6 Score=29.25 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=26.0
Q ss_pred HHHHHHhcC--------CcHHHHhhhcCCC----CHHHHHHHHHHHhh
Q 022144 75 ILRAHARFG--------NKWATIARLLSGR----TDNAIKNHWNSTLK 110 (302)
Q Consensus 75 Ll~lv~~~G--------nkW~~IA~~l~gR----T~~q~knRw~~~Lk 110 (302)
|..+|.+.| ++|.+|++.|.-- ....+|++|.++|-
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 777777776 4699999987422 25688888877664
No 114
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=51.56 E-value=13 Score=28.95 Aligned_cols=38 Identities=21% Similarity=0.518 Sum_probs=28.0
Q ss_pred HHHHHHHhcC--------CcHHHHhhhcCC-----CCHHHHHHHHHHHhhh
Q 022144 74 TILRAHARFG--------NKWATIARLLSG-----RTDNAIKNHWNSTLKR 111 (302)
Q Consensus 74 ~Ll~lv~~~G--------nkW~~IA~~l~g-----RT~~q~knRw~~~Lkr 111 (302)
.|..+|.+.| +.|.+|+..|.- -....++++|..+|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4777778887 469999998742 1246899999887754
No 115
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=51.49 E-value=24 Score=28.54 Aligned_cols=31 Identities=10% Similarity=0.106 Sum_probs=24.6
Q ss_pred HhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 80 ARFGNKWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 80 ~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
...|-...+||..+ |-+...|+++....+++
T Consensus 153 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 153 ELDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34577899999999 89999999988765543
No 116
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=51.40 E-value=29 Score=23.76 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=34.8
Q ss_pred CCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 65 RPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 65 ~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
..+|+.|-+.|.. + ..|....+||..+ |-+...|+.|...++++-
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 4577777666554 4 6778899999999 889999999888766554
No 117
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=51.25 E-value=27 Score=25.27 Aligned_cols=44 Identities=30% Similarity=0.331 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 66 PFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 66 ~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
.+|+.|-+.|. ++ ..|..-.+||+.+ |-+...|++|....+++.
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46776665554 44 6788899999999 899999999887766554
No 118
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=51.05 E-value=28 Score=25.95 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 66 PFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 66 ~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
.+|+.|-+.|.- + ..|-.-.+||..| |-+...|++|....+++.
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 567666665554 4 7788899999999 899999999988776654
No 119
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=48.58 E-value=35 Score=29.18 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCCC-H-HHHHhhCCCCCcc---cccccccccCC-CCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhc
Q 022144 20 DEALQRLVQNYGPRN-W-SLISKSIPGRSGK---SCRLRWCNQLS-PQVEHRPFTPEEDETILRAHARFGNKWATIARLL 93 (302)
Q Consensus 20 D~~L~~lV~k~G~~n-W-~~IA~~lp~Rt~k---qCr~Rw~n~L~-p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l 93 (302)
+.++..+...-|.++ + ..|-..+.+.+.. .+...|..-.. |.--.|-||.|+|+.|. +++=..|.+..
T Consensus 64 ~~Lv~~l~~e~Gi~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~------s~d~~dikrL~ 137 (168)
T 3cz6_A 64 EKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLK------SNDQEQIRKLV 137 (168)
T ss_dssp HHHHHHHHHHHCBCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHH------SCCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHH------cCCHHHHHHHH
Confidence 344455556667553 2 3344444444433 33444444333 45678999999999885 22233333333
Q ss_pred CCCCHHHHHHHHHHH
Q 022144 94 SGRTDNAIKNHWNST 108 (302)
Q Consensus 94 ~gRT~~q~knRw~~~ 108 (302)
.-.....+..||+.+
T Consensus 138 kKHG~erie~R~~FL 152 (168)
T 3cz6_A 138 KKHGTGRMEMRKRFF 152 (168)
T ss_dssp HHHCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH
Confidence 333445556666544
No 120
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=48.45 E-value=22 Score=29.29 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=28.1
Q ss_pred HHHHHHHhcC--------CcHHHHhhhcCC--C---CHHHHHHHHHHHhhh
Q 022144 74 TILRAHARFG--------NKWATIARLLSG--R---TDNAIKNHWNSTLKR 111 (302)
Q Consensus 74 ~Ll~lv~~~G--------nkW~~IA~~l~g--R---T~~q~knRw~~~Lkr 111 (302)
.|..+|.+.| ++|.+|+..|.- . ....+|+.|..+|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 4777788887 369999998732 1 257899999987744
No 121
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=48.26 E-value=24 Score=28.81 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhccC
Q 022144 70 EEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKCSS 115 (302)
Q Consensus 70 EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~ 115 (302)
+-|..|+++.++.| -.|..||+.+ |=+...|..|++.+....+-.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 56788888888877 5799999999 999999999999887776543
No 122
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=47.49 E-value=25 Score=28.19 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=28.4
Q ss_pred HHHHHHHhcC--------CcHHHHhhhcCC--C---CHHHHHHHHHHHhhh
Q 022144 74 TILRAHARFG--------NKWATIARLLSG--R---TDNAIKNHWNSTLKR 111 (302)
Q Consensus 74 ~Ll~lv~~~G--------nkW~~IA~~l~g--R---T~~q~knRw~~~Lkr 111 (302)
.|..+|.++| ++|..|+..|.- . ....+|.+|..+|-.
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4777788887 469999998732 2 257899999988754
No 123
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=46.46 E-value=36 Score=23.48 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHH
Q 022144 70 EEDETILRAHARFGNKWATIARLLSGRTDNAIKNHW 105 (302)
Q Consensus 70 EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw 105 (302)
-|.+.|.++...+|+++.+.|+.| |=+...+..+-
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rkl 53 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 477788999999999999999998 66665555443
No 124
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=45.62 E-value=33 Score=26.62 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=24.2
Q ss_pred hcCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 81 RFGNKWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 81 ~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
..|-....||+.| |-+...|+++....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567899999999 89999999988765544
No 125
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=45.34 E-value=40 Score=26.16 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 70 EEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 70 EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
+.++.++.++...|-....||..+ |-+...|+.+....+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445666777777889999999999 89999999887655433
No 126
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=43.73 E-value=39 Score=22.35 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 72 DETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 72 D~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
+..++.+ -..|-.-.+||..+ |-+...|+.|...++++-
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4455666 36687889999999 899999999988776654
No 127
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=42.89 E-value=33 Score=26.63 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=28.4
Q ss_pred CCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHH
Q 022144 66 PFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIK 102 (302)
Q Consensus 66 ~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~k 102 (302)
.=++.-+..|..+....|..|..+|+.| |=+..+|.
T Consensus 12 ~~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 12 SGTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp SCSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred chHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 3366677788888899999999999999 76665553
No 128
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=41.75 E-value=40 Score=25.04 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHH
Q 022144 69 PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWN 106 (302)
Q Consensus 69 ~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~ 106 (302)
.-|.+.|.++..++|++..+.|+.| |=+...++.+.+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rklk 86 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHHH
Confidence 3477788999999999999999998 777777765543
No 129
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=41.74 E-value=41 Score=27.94 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 71 EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 71 ED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
.++.++.++...|-...+||+.| |-+...|+.+....+++
T Consensus 191 ~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 191 REKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 33444444445678899999999 89999999887655443
No 130
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=41.04 E-value=59 Score=19.69 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=28.7
Q ss_pred CCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHH
Q 022144 66 PFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHW 105 (302)
Q Consensus 66 ~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw 105 (302)
..++++-..++.++ ..|.....||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45677766777665 4577899999999 88888887654
No 131
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=40.86 E-value=17 Score=30.19 Aligned_cols=36 Identities=28% Similarity=0.557 Sum_probs=27.9
Q ss_pred HHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHH
Q 022144 36 SLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRA 78 (302)
Q Consensus 36 ~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~l 78 (302)
..||..+.|+|+.+||..+. +. ..||+||++.|.+-
T Consensus 119 ~~vA~~ikgkt~eeir~~f~------I~-nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTFN------IK-NDFTPEEEEEVRRE 154 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHTT------CC-CCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHHh
Confidence 56788889999999998762 32 35999999887643
No 132
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=40.86 E-value=30 Score=27.81 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=27.9
Q ss_pred HHHHHHHhcC--------CcHHHHhhhcC--CC---CHHHHHHHHHHHhhh
Q 022144 74 TILRAHARFG--------NKWATIARLLS--GR---TDNAIKNHWNSTLKR 111 (302)
Q Consensus 74 ~Ll~lv~~~G--------nkW~~IA~~l~--gR---T~~q~knRw~~~Lkr 111 (302)
.|..+|.++| ++|.+|+..|. .- ....++++|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 4777888888 36999999873 21 256889999877644
No 133
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=40.84 E-value=34 Score=25.02 Aligned_cols=44 Identities=25% Similarity=0.167 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 66 PFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 66 ~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
.+|+.|-+.|. ++ ..|-.-.+||..| |-+...|++|....+++.
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46666666554 44 6788889999999 999999999988776654
No 134
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=40.64 E-value=16 Score=29.51 Aligned_cols=30 Identities=20% Similarity=0.049 Sum_probs=23.8
Q ss_pred hcCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 81 RFGNKWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 81 ~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
..|-...+||..+ |-+...|+++....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3467788999988 88999999988766554
No 135
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=36.69 E-value=1.6e+02 Score=23.34 Aligned_cols=90 Identities=17% Similarity=0.056 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccccc------CCCCC----CCCCCChHHHHHHHHHHHhc
Q 022144 13 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQ------LSPQV----EHRPFTPEEDETILRAHARF 82 (302)
Q Consensus 13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~------L~p~~----kk~~WT~EED~~Ll~lv~~~ 82 (302)
...|.++-..++.++. .| .....||+.+ +.+...+ .||.+. +.+.. .....++++.+.|++++.+.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~l-gis~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 99 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQL-RVSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQN 99 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHH-TCCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 3688888888888884 46 4689999887 4444333 334332 22211 13457888888888888765
Q ss_pred C-CcHHHHhhhcC---------CCCHHHHHHHHH
Q 022144 83 G-NKWATIARLLS---------GRTDNAIKNHWN 106 (302)
Q Consensus 83 G-nkW~~IA~~l~---------gRT~~q~knRw~ 106 (302)
. -.-..|+..|. .-+...|.....
T Consensus 100 ~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 100 PTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp SSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 3 23345555441 345566655443
No 136
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=35.95 E-value=67 Score=24.95 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 70 EEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 70 EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
+.++.++.++...|..-..||..+ |-+...|+.+....+++
T Consensus 25 ~~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 25 DKQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344566667777899999999999 99999999988765543
No 137
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=35.77 E-value=67 Score=25.38 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144 70 EEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKC 113 (302)
Q Consensus 70 EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~ 113 (302)
+-|..|+.+..+.| -.+.+||+.+ |=+...|..+.+.+.+..+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45667777777776 5799999999 8899999999988876654
No 138
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=35.17 E-value=80 Score=23.93 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=35.9
Q ss_pred CCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 64 HRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 64 k~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
....|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+...++++.
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 35678877776644 3 3688889999999 889999999888777664
No 139
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=35.01 E-value=33 Score=26.36 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHhhCCCC
Q 022144 20 DEALQRLVQNYGPRNWSLISKSIPGR 45 (302)
Q Consensus 20 D~~L~~lV~k~G~~nW~~IA~~lp~R 45 (302)
+..|.++|+.|| |..++..+.-|
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I~ 40 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNIN 40 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTSS
T ss_pred HHHHHHHHHHhC---HHHHHhhcccc
Confidence 578999999999 99999988543
No 140
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=34.46 E-value=45 Score=26.26 Aligned_cols=29 Identities=24% Similarity=0.530 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCcHHHHhhhcCCCCHHHH
Q 022144 72 DETILRAHARFGNKWATIARLLSGRTDNAI 101 (302)
Q Consensus 72 D~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~ 101 (302)
|..|..+....|..|..+|+.| |=+..+|
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I 41 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREV 41 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHH
Confidence 3567777889999999999998 6655555
No 141
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=34.36 E-value=65 Score=26.62 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhcc
Q 022144 69 PEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKCS 114 (302)
Q Consensus 69 ~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~ 114 (302)
.+-|..|+.+..+.| -.|.+||+.+ |-+...|..|++.+....+-
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 456677888877777 5799999999 89999999999888766543
No 142
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=34.27 E-value=48 Score=26.24 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=23.6
Q ss_pred CCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHH
Q 022144 64 HRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAI 101 (302)
Q Consensus 64 k~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~ 101 (302)
...-|++ .|..+....|..|..+|+.| |=+..+|
T Consensus 19 ~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 19 NSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp GSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred cCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 3344444 45566788999999999998 6555544
No 143
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=33.97 E-value=45 Score=26.35 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=25.3
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHH
Q 022144 61 QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAI 101 (302)
Q Consensus 61 ~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~ 101 (302)
.+-...-|++ .|..+....|.+|..+|+.| |=+..+|
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dI 52 (114)
T 2of5_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (114)
T ss_dssp CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHH
T ss_pred hhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 3344444555 45566788999999999998 6555554
No 144
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=32.96 E-value=53 Score=24.41 Aligned_cols=37 Identities=16% Similarity=0.041 Sum_probs=28.7
Q ss_pred CChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHH
Q 022144 67 FTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNH 104 (302)
Q Consensus 67 WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knR 104 (302)
..+-|.+.|.++.++++++..+.|+.| |=+...+..+
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyrK 74 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQRI 74 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHH
Confidence 334567788899999999999999998 7676666544
No 145
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=31.91 E-value=80 Score=25.01 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhcc
Q 022144 70 EEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKCS 114 (302)
Q Consensus 70 EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~ 114 (302)
+-|..|+.+..+.| -.+.+||+.+ |-+...|..|.+.+...-+-
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 44667777777776 5799999999 89999999999988777643
No 146
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.31 E-value=2.1e+02 Score=22.20 Aligned_cols=77 Identities=18% Similarity=0.087 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccccc------CCCCCC----CCCCChHHHHHHHHHHHhc
Q 022144 13 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQ------LSPQVE----HRPFTPEEDETILRAHARF 82 (302)
Q Consensus 13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~------L~p~~k----k~~WT~EED~~Ll~lv~~~ 82 (302)
...|.|+-..++.++. .| .....||+.+ |.+...+ .||.+. +.+... ....++++.+.|++++.+.
T Consensus 31 ~~~s~e~r~~iv~~~~-~G-~s~~~iA~~l-gis~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QG-VRPCDISRQL-RVSHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 4688888888888884 46 4688999887 4444333 334322 222211 3357888888888888765
Q ss_pred C-CcHHHHhhhc
Q 022144 83 G-NKWATIARLL 93 (302)
Q Consensus 83 G-nkW~~IA~~l 93 (302)
. -.-..|+..|
T Consensus 107 ~~~s~~~i~~~l 118 (149)
T 1k78_A 107 PTMFAWEIRDRL 118 (149)
T ss_dssp TTCCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 3 2334565544
No 147
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=27.54 E-value=26 Score=28.84 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=27.0
Q ss_pred HHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHH
Q 022144 36 SLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILR 77 (302)
Q Consensus 36 ~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~ 77 (302)
..||..+.|+|+.+||..|. +. ..||+||++.|.+
T Consensus 120 ~~va~~i~gkt~eeir~~f~------I~-~d~t~eEe~~ir~ 154 (159)
T 2ast_A 120 KTVANMIKGKTPEEIRKTFN------IK-NDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHSSCCHHHHHHHTT------CC-CCSCTTHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 45788889999999998762 22 3599999988754
No 148
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=26.33 E-value=62 Score=25.02 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHH
Q 022144 72 DETILRAHARFGNKWATIARLLSGRTDNAIKN 103 (302)
Q Consensus 72 D~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~kn 103 (302)
+..|-.+....|.+|..+|++| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 3445566677899999999998 666655533
No 149
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=25.55 E-value=1.2e+02 Score=23.89 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144 70 EEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKC 113 (302)
Q Consensus 70 EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~ 113 (302)
+-|..|+.+..+.| -.+..||+.+ |-+...|..|.+.+.+..+
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 51 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGI 51 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCC
Confidence 44667777777776 5799999999 8899999999988876654
No 150
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=25.27 E-value=28 Score=29.23 Aligned_cols=41 Identities=37% Similarity=0.651 Sum_probs=28.6
Q ss_pred HHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHH
Q 022144 35 WSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWA 87 (302)
Q Consensus 35 W~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~ 87 (302)
=..||..+.|+|+.++|..|. +. ..||+||++.|.+ .|.|.
T Consensus 126 c~~vA~~ikgktpeeiR~~f~------I~-nd~t~eEe~~ir~-----en~W~ 166 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTFN------IV-NDFTPEEEAAIRR-----ENEWA 166 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT------CC-CCCCHHHHHHHHT-----TC---
T ss_pred HHHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHH-----hcccc
Confidence 466888889999999998762 22 2599999998743 45664
No 151
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.13 E-value=99 Score=26.84 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 66 PFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 66 ~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
..++. ++.++.++ ..|-.-.+||..| |.+...|+.|-...+++.
T Consensus 197 ~L~~~-erevl~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 197 ILSER-EKEILRCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEKL 240 (258)
T ss_dssp SSCHH-HHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cCCHH-HHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34444 44455555 5888999999999 999999999988776654
No 152
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=25.10 E-value=1.2e+02 Score=24.23 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144 70 EEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKC 113 (302)
Q Consensus 70 EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~ 113 (302)
+-|..|+.+..+.| -.+..||+.+ |-+...|..|.+.+.+.-+
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 53 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAGI 53 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 44567777777776 5799999999 8899999999988876654
No 153
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=24.14 E-value=1.2e+02 Score=23.18 Aligned_cols=36 Identities=8% Similarity=0.031 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHH
Q 022144 69 PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHW 105 (302)
Q Consensus 69 ~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw 105 (302)
.-|...|.++..++|++..+.|+.| |=+...++.+-
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~L-GIsR~TL~rkL 92 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMM-GINRGTLRKKL 92 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHHH
Confidence 3467788889999999999999998 77776665543
No 154
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=23.52 E-value=1.1e+02 Score=23.95 Aligned_cols=45 Identities=18% Similarity=0.072 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhccC
Q 022144 70 EEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKCSS 115 (302)
Q Consensus 70 EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~ 115 (302)
+-|..|+.+..+.| -.+..||+.+ |=+...|..|.+.+.+.-+-.
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREI-RIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEE
Confidence 34667777777766 5799999999 899999999999887776543
No 155
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=23.33 E-value=2.4e+02 Score=21.79 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=33.1
Q ss_pred CCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHH
Q 022144 65 RPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNS 107 (302)
Q Consensus 65 ~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~ 107 (302)
..+|.|+-..++.++. -|.....||+.| |.+...|..+...
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHHH
Confidence 4789998888888884 688889999999 8888888765543
No 156
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=23.03 E-value=1.5e+02 Score=22.57 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHh----cCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144 70 EEDETILRAHAR----FGNKWATIARLLSGRTDNAIKNHWNSTLKR 111 (302)
Q Consensus 70 EED~~Ll~lv~~----~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr 111 (302)
+.++.++.+.-- .|-.+.+||..+ |-+...|+++-...+++
T Consensus 22 ~reR~Vi~Lry~l~~~e~~s~~EIA~~l-giS~~tVr~~~~rAlkk 66 (99)
T 3t72_q 22 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 66 (99)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 334455555332 246799999999 88888888887655544
No 157
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=22.54 E-value=1.3e+02 Score=23.17 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhcc
Q 022144 71 EDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKCS 114 (302)
Q Consensus 71 ED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~ 114 (302)
-|..|+.+....| -.+..||+.+ |-+...|..+.+.+....+-
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i 48 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKALEEKGII 48 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 4566777776666 5799999999 89999999999888776543
No 158
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=22.15 E-value=2e+02 Score=21.00 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=31.7
Q ss_pred CCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHH
Q 022144 65 RPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWN 106 (302)
Q Consensus 65 ~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~ 106 (302)
...+.++-..++.++. .|.....||+.| |.+...|..+..
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~s~~~ia~~l-gis~~Tv~~w~~ 55 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGIRPCVISRQL-RVSHGCVSKILN 55 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHH
Confidence 3688888888888874 688889999999 788887766443
No 159
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=21.92 E-value=1.5e+02 Score=24.32 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhcc
Q 022144 69 PEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKCS 114 (302)
Q Consensus 69 ~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~ 114 (302)
.+-|..|+.+..+.| -.+.+||+.+ |=+...|..|.+.+.+..+-
T Consensus 16 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~~l~~L~~~G~I 61 (171)
T 2ia0_A 16 DDLDRNILRLLKKDARLTISELSEQL-KKPESTIHFRIKKLQERGVI 61 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 345567777777776 5799999999 89999999999888766543
No 160
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=21.65 E-value=49 Score=31.74 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=23.0
Q ss_pred CCHHHHHHHH--HHHH---HHHHHHHhcCCCCC
Q 022144 253 FSPEFLAVMQ--EMIR---KEVRNYMSGVERNG 280 (302)
Q Consensus 253 ~~~~~~~~mq--emi~---~ev~~ym~~~~~~~ 280 (302)
-..+.+.|+| ||+| +|+..|+..++-.|
T Consensus 205 t~~DV~~~~qr~emvrri~~ei~~yv~eLG~dG 237 (377)
T 3c1y_A 205 TLADVVRTLAKGFELLRIVEEIRPYIVELGEEG 237 (377)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4667888888 9999 99999999985434
No 161
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.16 E-value=1.4e+02 Score=21.50 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHhcC----CcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 68 TPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 68 T~EED~~Ll~lv~~~G----nkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
+.+-|+.|+.+....| -.=.+||+.| |-+...|..+-..+.+.-
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 5677788889988888 3579999999 788888888876665543
No 162
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=20.96 E-value=61 Score=24.28 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCcHHHHhhhcCCCCHHHHH
Q 022144 73 ETILRAHARFGNKWATIARLLSGRTDNAIK 102 (302)
Q Consensus 73 ~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~k 102 (302)
..+..+....|..|..+|+.| |=+..+|.
T Consensus 15 ~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~ 43 (99)
T 1fad_A 15 VAFDIVCDNVGRDWKRLAREL-KVSEAKMD 43 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 345556677899999999998 66665553
No 163
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.95 E-value=83 Score=24.99 Aligned_cols=42 Identities=14% Similarity=0.008 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144 70 EEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112 (302)
Q Consensus 70 EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk 112 (302)
++++.++.+....|-.-.+||..+ |-+...|+++....+++.
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~L 137 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAEI 137 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455566666666788899999999 999999999987655443
No 164
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=20.79 E-value=23 Score=28.94 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccccc
Q 022144 18 EEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQ 57 (302)
Q Consensus 18 EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~ 57 (302)
+-|..|++++++.+.-.|.+||+.+ |-+...|+.|+.+.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L 41 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKM 41 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 5688899999998888999999988 67888887776554
Done!