BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022145
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GAK|A Chain A, Crystal Structure Of Acyl-Acp Thioesterase From Spirosoma
Linguale
Length = 250
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 17/197 (8%)
Query: 106 TVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRM 165
T +R YE ++ ++ NL QE+A + + G G + + + W + R
Sbjct: 11 TFTLRGYECDAFGRXSIPALXNLXQESANRNA-----IDYGIGIA-DLAQKGVGWXLXRF 64
Query: 166 QVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATSTWVMMNQQTRRL 225
+ I YP +G+ +++ T+ K + RD+ + + G + A A STW++ + + R
Sbjct: 65 CLRIHQYPRYGDTIQLXTYPTTVDKYFIHRDFRVLA-TDGTLLADARSTWLVFSXEKRSX 123
Query: 226 SKIPAEVRAEISPWFIDKQAIIEDVPEKISKLD-DTAKYVNSDLKPKRS---DLDMNHHV 281
+P +R ++SP A ++ +P K D TA + + K + ++D N HV
Sbjct: 124 VPLPDFIR-QLSP-----PANVDPLPALPLKPDFQTASFATAASKSVQVGWLNIDQNQHV 177
Query: 282 NNVKYVRWMLENTEGNV 298
NNV YV+W+LE + +
Sbjct: 178 NNVAYVQWLLEGVDSEI 194
>pdb|2ESS|A Chain A, Crystal Structure Of An Acyl-Acp Thioesterase
(Np_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.90 A Resolution
Length = 248
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 6/147 (4%)
Query: 146 GFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATG 205
GFG + +N WV+SR+ +E+D P E + TWV + R++ + + G
Sbjct: 47 GFGIA-TLNEDNYTWVLSRLAIELDEXPYQYEKFSVQTWVENVYRLFTDRNFAVIDK-DG 104
Query: 206 HIFARATSTWVMMNQQTRRLSKIPAEVRAEISPWFIDKQAIIEDVPEKISKLDDTAKYVN 265
A S W +N TR+ + + A I + D+ IE K S++ T+
Sbjct: 105 KKIGYARSVWAXINLNTRKPADLLALHGGSIVDYICDEPCPIE----KPSRIKVTSNQPV 160
Query: 266 SDLKPKRSDLDMNHHVNNVKYVRWMLE 292
+ L K SD+D+N HVN+++Y+ +L+
Sbjct: 161 ATLTAKYSDIDINGHVNSIRYIEHILD 187
>pdb|2OWN|A Chain A, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
pdb|2OWN|B Chain B, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
Length = 262
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 13/191 (6%)
Query: 112 YEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLI-WVVSRMQVEID 170
YE ATL +++++ V S S+ G T ++++ + WVV++ ++I
Sbjct: 21 YECDRTGRATLTTLIDI-------AVLASEDQSDALGLTTEXVQSHGVGWVVTQYAIDIT 73
Query: 171 HYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATSTWVMMNQQTRRLSKIPA 230
P EVV I A R++ IR A G A TS WV +Q TRR+ KI
Sbjct: 74 RXPRQDEVVTIAVRGSAYNPYFAYREFWIRD-ADGQQLAYITSIWVXXSQTTRRIVKILP 132
Query: 231 EVRAEISPWFIDKQAIIEDVPEKISKLDDTAKYVNSDLKPKRSDLDMNHHVNNVKYVRWM 290
E+ ++P+ + I +P IS + T + + D+D N HVNN Y W+
Sbjct: 133 EL---VAPYQSEVVKRIPRLPRPIS-FEATDTTITKPYHVRFFDIDPNRHVNNAHYFDWL 188
Query: 291 LENTEGNVEVQ 301
++ +Q
Sbjct: 189 VDTLPATFLLQ 199
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 108 VVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHG 152
++ +Y + P K + + + L+ F E + H+++S +L G+THG
Sbjct: 3 LLSTYRLQPMKFSEIRNRLDYFVELGVTHLYLSPVLKARPGSTHG 47
>pdb|2FGY|A Chain A, Beta Carbonic Anhydrase From The Carboxysomal Shell Of
Halothiobacillus Neapolitanus (Csosca)
pdb|2FGY|B Chain B, Beta Carbonic Anhydrase From The Carboxysomal Shell Of
Halothiobacillus Neapolitanus (Csosca)
Length = 542
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 18/81 (22%)
Query: 77 IRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATL--ESILNLFQETAL 134
IR +IP K F++PYR+ ++ V Y QT+ + PD+ + E+ILN +
Sbjct: 330 IRVHIPDSKGFLNPYRY---VDNTVTYAQTL-----HLAPDEARVIIHEAILNANRSDG- 380
Query: 135 NHVWMSGLLSNGFGATHGMMR 155
W G NG A+ GM R
Sbjct: 381 ---WAKG---NGV-ASEGMRR 394
>pdb|2L21|A Chain A, Chicken Igf2r Domain 11
Length = 154
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 21/122 (17%)
Query: 190 KNGMRRDWLIRSQATGHIF----ARATSTWVMMNQQTRRLSKIPAEVRAEISPWFIDKQA 245
K+ ++ D + + ATGH+F + S + + + R KI V AE + A
Sbjct: 2 KSNVQNDCRVTNPATGHLFDLTSLKRESGYTITDSHNR---KIELNVCAEAKSSCANGAA 58
Query: 246 I-IEDVPE-----KISKL----DDTAKYVNSDLKPKRSDLDMNHHVNNVKYVRWMLENTE 295
+ I D P+ K+SK D K V D P +DL M H Y ++ ++
Sbjct: 59 VCITDGPKTLNAGKLSKTLTYEDQVLKLVYEDGDPCPTDLKMKHK----SYFSFVCKSDA 114
Query: 296 GN 297
G+
Sbjct: 115 GD 116
>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
From Bifidobacterium Longum (Engbf)
Length = 1376
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 63 VAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEV 114
VA+E + EVQI++N P+ Q+ + +G V Y Q+ VR+ E+
Sbjct: 22 VASETLKTKKMEVQIKKNFPSVLQYT-------MTDGKVMYGQSKDVRTVEI 66
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 38 GNSTRSTKVDLHSQTTGVASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVDPYRH 93
G + K+ L + G+ ST + ++ KE N V++ I TKK+ V + H
Sbjct: 26 GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 38 GNSTRSTKVDLHSQTTGVASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVDPYRH 93
G + K+ L + G+ ST + ++ KE N V++ I TKK+ V + H
Sbjct: 26 GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81
>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil
pdb|3TKU|B Chain B, Mrck Beta In Complex With Fasudil
Length = 433
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 225 LSKIPAEVRAEISPWFIDKQAIIEDVPEKISKLDDTAKYVNSDLKPKRSDLDMNHHVNNV 284
LSK ++ +++ ++I + + D ++ YV+ D+KP LD+N H+
Sbjct: 181 LSKFEDKLPEDMARFYIGEMVLAIDSIHQL-------HYVHRDIKPDNVLLDVNGHIRLA 233
Query: 285 KYVRWMLENTEGNVE 299
+ + N +G V+
Sbjct: 234 DFGSCLKMNDDGTVQ 248
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 38 GNSTRSTKVDLHSQTTGVASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVDPYRH 93
G + K+ L + G+ ST + ++ KE N V++ I TKK+ V + H
Sbjct: 26 GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81
>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1
pdb|3QFV|B Chain B, Mrck Beta In Complex With Tpca-1
Length = 415
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 225 LSKIPAEVRAEISPWFIDKQAIIEDVPEKISKLDDTAKYVNSDLKPKRSDLDMNHHVNNV 284
LSK ++ +++ ++I + + D ++ YV+ D+KP LD+N H+
Sbjct: 165 LSKFEDKLPEDMARFYIGEMVLAIDSIHQL-------HYVHRDIKPDNVLLDVNGHIRLA 217
Query: 285 KYVRWMLENTEGNVE 299
+ + N +G V+
Sbjct: 218 DFGSCLKMNDDGTVQ 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,873,652
Number of Sequences: 62578
Number of extensions: 342585
Number of successful extensions: 1110
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 19
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)