BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022146
         (302 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9JJ59|ABCB9_MOUSE ATP-binding cassette sub-family B member 9 OS=Mus musculus GN=Abcb9
           PE=2 SV=1
          Length = 762

 Score = 32.7 bits (73), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 141 RHPTLDMPVIDYDLALLFQPMLVLGISIGVAFNV------IFADWMITVLLIILFIGMSA 194
           RH  +   V+D   A L++  L+LG +IGVA N       + A W++ + L+ LF+G+ A
Sbjct: 39  RHFNIFDSVLDLWAACLYRSCLLLGATIGVAKNSALGPRRLRASWLV-ITLVCLFVGIYA 97

Query: 195 KAFL 198
            A L
Sbjct: 98  MAKL 101


>sp|Q9QYJ4|ABCB9_RAT ATP-binding cassette sub-family B member 9 OS=Rattus norvegicus
           GN=Abcb9 PE=1 SV=1
          Length = 762

 Score = 32.7 bits (73), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 141 RHPTLDMPVIDYDLALLFQPMLVLGISIGVAFNV------IFADWMITVLLIILFIGMSA 194
           RH  +   V+D   A L++  L+LG +IGVA N       + A W++ + L+ LF+G+ A
Sbjct: 39  RHFNIFDSVLDLWAACLYRSCLLLGATIGVAKNSALGPRRLRASWLV-ITLVCLFVGIYA 97

Query: 195 KAFL 198
            A L
Sbjct: 98  MAKL 101


>sp|Q810K3|SGPP2_MOUSE Sphingosine-1-phosphate phosphatase 2 OS=Mus musculus GN=Sgpp2 PE=2
           SV=1
          Length = 354

 Score = 32.0 bits (71), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 143 PTLDMPVIDYDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGVE 202
           PT  +PVI  ++  L   MLVLG++           +M+ ++LI+L   +  K  L+ + 
Sbjct: 258 PTPSLPVIQ-NIPPLTTDMLVLGLT----------KFMVGIMLILLVRQLVQKLSLQVLF 306

Query: 203 TWKKETITKVEAAKRLELD 221
           +W K      EA +RLE++
Sbjct: 307 SWFKVVTRNKEARRRLEIE 325


>sp|Q9NP78|ABCB9_HUMAN ATP-binding cassette sub-family B member 9 OS=Homo sapiens GN=ABCB9
           PE=1 SV=1
          Length = 766

 Score = 31.6 bits (70), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 141 RHPTLDMPVIDYDLALLFQPMLVLGISIGVAFNV------IFADWMITVLLIILFIGMSA 194
           RH  +   V+D   A L++  L+LG +IGVA N       + A W++ + L+ LF+G+ A
Sbjct: 39  RHFNIFDSVLDLWAACLYRSCLLLGATIGVAKNSALGPRRLRASWLV-ITLVCLFVGIYA 97


>sp|P44054|Y806_HAEIN UPF0721 transmembrane protein HI_0806 OS=Haemophilus influenzae
           (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0806
           PE=3 SV=1
          Length = 268

 Score = 31.6 bits (70), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 93  SVGGVGGGGIFVPMLNLIIGFDPKSSV-ALSKCMITGTAVATVVYNLRQRHPTLDMPVID 151
           ++ G+GGG + VP+L  +    P   + A S  ++  TA+  +++  +Q+        ID
Sbjct: 21  AIFGIGGGVLMVPILRTLFPELPIQVISATSLTIVMCTALINLLFFHKQKIK------ID 74

Query: 152 YDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLK 199
           Y   +L+   +V+G+ IG   +  F+  +I+++  +    ++ K FL 
Sbjct: 75  YINMILWSIAMVIGVQIGFELSFYFSTAIISLIFTVSLSALAIKTFLN 122


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,229,267
Number of Sequences: 539616
Number of extensions: 4225262
Number of successful extensions: 14098
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 14090
Number of HSP's gapped (non-prelim): 23
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)