Query 022146
Match_columns 302
No_of_seqs 372 out of 1315
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:23:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0730 Predicted permeases [G 99.6 3.1E-14 6.8E-19 131.1 15.3 118 77-202 6-123 (258)
2 PRK10621 hypothetical protein; 99.6 4.6E-14 9.9E-19 131.2 15.9 113 78-199 12-124 (266)
3 PRK10621 hypothetical protein; 99.5 9.9E-14 2.1E-18 129.0 14.7 115 81-202 142-256 (266)
4 COG0730 Predicted permeases [G 99.5 9.4E-13 2E-17 121.3 16.0 116 79-201 139-255 (258)
5 PF01925 TauE: Sulfite exporte 99.4 1.5E-12 3.3E-17 117.5 12.9 110 82-200 2-111 (240)
6 PF01925 TauE: Sulfite exporte 99.4 1E-11 2.2E-16 112.2 13.2 112 78-196 125-240 (240)
7 KOG2881 Predicted membrane pro 89.0 2.3 4.9E-05 40.5 8.3 51 157-207 108-158 (294)
8 PF11833 DUF3353: Protein of u 88.7 8.3 0.00018 34.9 11.7 43 151-193 139-190 (194)
9 COG2119 Predicted membrane pro 86.3 4.7 0.0001 36.4 8.4 53 149-201 134-186 (190)
10 TIGR02840 spore_YtaF putative 82.2 4.3 9.3E-05 36.8 6.6 50 153-202 35-84 (206)
11 PRK11469 hypothetical protein; 75.7 41 0.00088 30.1 10.7 47 155-202 44-90 (188)
12 COG1055 ArsB Na+/H+ antiporter 68.4 24 0.00052 35.7 8.2 26 263-295 227-252 (424)
13 PF01169 UPF0016: Uncharacteri 67.8 16 0.00034 28.2 5.4 43 150-192 35-77 (78)
14 PF09527 ATPase_gene1: Putativ 67.7 37 0.00079 24.0 6.9 47 154-200 6-53 (55)
15 COG1971 Predicted membrane pro 64.3 79 0.0017 28.7 9.9 47 156-203 45-91 (190)
16 PTZ00370 STEVOR; Provisional 64.0 39 0.00085 32.6 8.2 45 164-208 243-290 (296)
17 PF02652 Lactate_perm: L-lacta 61.3 1.7E+02 0.0036 30.5 12.9 44 81-125 104-148 (522)
18 COG3180 AbrB Putative ammonia 58.6 73 0.0016 31.6 9.3 83 78-190 190-272 (352)
19 PRK10263 DNA translocase FtsK; 57.3 81 0.0018 36.5 10.5 20 159-178 141-160 (1355)
20 PF05232 BTP: Bacterial Transm 56.5 33 0.00072 25.7 5.2 41 99-139 17-57 (67)
21 PF11169 DUF2956: Protein of u 56.4 29 0.00062 28.5 5.1 20 258-277 81-100 (103)
22 PF07172 GRP: Glycine rich pro 55.6 17 0.00036 29.3 3.7 21 13-33 7-27 (95)
23 PF13515 FUSC_2: Fusaric acid 50.7 1.2E+02 0.0027 23.9 8.7 56 111-183 9-64 (128)
24 TIGR02230 ATPase_gene1 F0F1-AT 50.4 65 0.0014 26.3 6.3 43 155-197 49-92 (100)
25 PF02673 BacA: Bacitracin resi 50.2 2E+02 0.0044 27.0 10.6 90 109-198 28-127 (259)
26 COG2119 Predicted membrane pro 49.9 1.7E+02 0.0038 26.5 9.5 51 150-200 36-86 (190)
27 PF04018 DUF368: Domain of unk 49.1 2.1E+02 0.0046 27.0 10.5 54 150-203 52-107 (257)
28 TIGR03727 urea_t_UrtC_arc urea 44.3 3.2E+02 0.007 26.9 12.1 70 105-178 224-303 (364)
29 TIGR00892 2A0113 monocarboxyla 43.4 2.7E+02 0.0058 27.4 10.9 17 160-176 380-396 (455)
30 PF11044 TMEMspv1-c74-12: Plec 42.7 92 0.002 21.9 5.2 20 196-215 24-43 (49)
31 COG2917 Intracellular septatio 42.3 78 0.0017 28.5 6.0 45 150-194 50-94 (180)
32 COG3247 HdeD Uncharacterized c 41.9 2.6E+02 0.0057 25.2 11.6 52 151-204 75-126 (185)
33 COG4129 Predicted membrane pro 41.3 1.5E+02 0.0032 29.1 8.4 28 72-99 7-34 (332)
34 TIGR00795 lctP L-lactate trans 40.8 4.2E+02 0.0091 27.6 12.1 48 80-127 109-156 (530)
35 PF06422 PDR_CDR: CDR ABC tran 39.5 29 0.00063 27.9 2.8 26 256-281 44-69 (103)
36 PLN00151 potassium transporter 38.3 4.4E+02 0.0094 29.3 12.0 40 151-190 527-566 (852)
37 PRK09548 PTS system ascorbate- 37.3 1.2E+02 0.0027 32.1 7.6 29 5-35 262-290 (602)
38 COG4129 Predicted membrane pro 36.0 1.9E+02 0.0041 28.4 8.2 19 159-177 130-148 (332)
39 TIGR01478 STEVOR variant surfa 35.8 78 0.0017 30.6 5.4 43 166-208 249-294 (295)
40 PLN00148 potassium transporter 35.6 6.2E+02 0.014 27.9 12.6 39 152-190 451-489 (785)
41 KOG0569 Permease of the major 34.7 1.8E+02 0.0039 30.0 8.2 34 136-169 139-172 (485)
42 PRK03557 zinc transporter ZitB 34.1 4.2E+02 0.0091 25.2 11.4 55 151-205 159-213 (312)
43 PF03606 DcuC: C4-dicarboxylat 33.9 2E+02 0.0043 29.2 8.3 24 100-124 143-166 (465)
44 PF03741 TerC: Integral membra 33.8 2.6E+02 0.0056 24.8 8.2 35 165-201 48-82 (183)
45 PF11368 DUF3169: Protein of u 32.5 2.9E+02 0.0063 25.4 8.6 25 152-176 9-33 (248)
46 PLN00150 potassium ion transpo 32.4 7.2E+02 0.016 27.4 12.6 40 152-191 468-507 (779)
47 PF13172 PepSY_TM_1: PepSY-ass 31.9 62 0.0013 20.7 2.9 21 6-26 3-23 (34)
48 PRK09695 glycolate transporter 31.9 4.3E+02 0.0092 27.8 10.5 48 80-127 118-165 (560)
49 PRK10420 L-lactate permease; P 31.8 2.2E+02 0.0048 29.9 8.4 47 81-127 119-165 (551)
50 PRK00293 dipZ thiol:disulfide 30.9 6E+02 0.013 26.5 11.5 31 169-199 349-381 (571)
51 PF06081 DUF939: Bacterial pro 30.7 3.3E+02 0.0071 22.9 10.2 31 159-189 55-85 (141)
52 COG1811 Uncharacterized membra 30.1 1.2E+02 0.0027 28.1 5.5 41 160-200 10-53 (228)
53 PRK10995 inner membrane protei 30.1 3.4E+02 0.0073 24.7 8.5 51 150-200 43-95 (221)
54 PF04474 DUF554: Protein of un 30.1 1.1E+02 0.0023 28.5 5.2 41 160-200 9-52 (226)
55 PF10999 DUF2839: Protein of u 29.8 45 0.00097 25.4 2.2 23 255-277 39-61 (68)
56 PF05052 MerE: MerE protein; 29.4 1.8E+02 0.0039 22.5 5.4 36 162-200 38-73 (75)
57 COG3619 Predicted membrane pro 28.5 4.8E+02 0.01 24.2 11.6 35 149-183 168-202 (226)
58 PLN00149 potassium transporter 28.5 8.3E+02 0.018 26.9 12.9 38 153-190 456-493 (779)
59 PF10399 UCR_Fe-S_N: Ubiquitin 28.0 47 0.001 22.7 1.8 19 91-109 19-37 (41)
60 PRK01844 hypothetical protein; 27.6 61 0.0013 25.0 2.6 21 76-96 4-24 (72)
61 PF09835 DUF2062: Uncharacteri 26.9 3.8E+02 0.0083 22.5 12.1 43 84-126 24-67 (154)
62 PF12805 FUSC-like: FUSC-like 25.8 5.5E+02 0.012 23.9 12.9 49 150-198 70-118 (284)
63 PF10104 Brr6_like_C_C: Di-sul 25.4 1.8E+02 0.0039 24.6 5.4 26 254-279 103-129 (135)
64 COG3158 Kup K+ transporter [In 24.4 4.5E+02 0.0098 28.0 8.9 28 6-33 287-314 (627)
65 PRK14766 lipoprotein signal pe 24.0 3.7E+02 0.0079 24.6 7.4 18 121-138 109-126 (201)
66 PF01914 MarC: MarC family int 23.6 5.2E+02 0.011 23.2 8.4 121 113-239 1-124 (203)
67 PF04279 IspA: Intracellular s 23.1 4.5E+02 0.0097 23.2 7.7 17 175-191 75-91 (176)
68 TIGR00794 kup potassium uptake 22.6 1E+03 0.022 25.9 13.5 46 155-201 425-470 (688)
69 PRK10745 trkD potassium transp 22.5 8E+02 0.017 26.3 10.5 43 158-201 402-444 (622)
70 PF03596 Cad: Cadmium resistan 22.4 5.8E+02 0.013 23.0 9.7 36 164-199 41-76 (191)
71 PF04018 DUF368: Domain of unk 21.8 4.3E+02 0.0094 24.9 7.7 35 151-185 187-221 (257)
72 PF06912 DUF1275: Protein of u 21.7 5.5E+02 0.012 22.5 14.2 38 150-187 163-200 (209)
73 PRK10692 hypothetical protein; 20.7 4.5E+02 0.0098 21.1 6.5 13 158-170 42-54 (92)
74 TIGR01667 YCCS_YHJK integral m 20.3 6.5E+02 0.014 27.2 9.5 86 97-199 389-474 (701)
75 PRK11111 hypothetical protein; 20.0 3.9E+02 0.0085 24.3 6.9 50 149-198 44-95 (214)
No 1
>COG0730 Predicted permeases [General function prediction only]
Probab=99.59 E-value=3.1e-14 Score=131.14 Aligned_cols=118 Identities=19% Similarity=0.389 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCChhhHHhhhHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHH
Q 022146 77 KIVVSSIIGFFGAACGSVGGVGGGGIFVPMLNLIIGFDPKSSVALSKCMITGTAVATVVYNLRQRHPTLDMPVIDYDLAL 156 (302)
Q Consensus 77 ~~ll~~liGflaG~isgl~GIGGG~I~VPiL~l~~glp~k~AvatS~~~i~~~s~s~~~~~~~~~~p~~~~p~Id~~lal 156 (302)
..++.+++|+++|+++|++|+|||.+.+|.|.. +++|+++|.+++++....+++++.+.|.++++ +||+.+.
T Consensus 6 ~~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~-~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~-------v~~~~~~ 77 (258)
T COG0730 6 TLLLLFLVGLLAGFISGLAGGGGGLLTVPALLL-LGLPPAAALGTSLLAVLFTSLSSALAYLKRGN-------VDWKLAL 77 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------ccHHHHH
Confidence 356677899999999999999999999999998 45999999999999999999999998888886 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022146 157 LFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGVE 202 (302)
Q Consensus 157 ~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~~ 202 (302)
.+.+++++|+.+|+.+...+|++.++.++.+++++.+.+++++...
T Consensus 78 ~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~ 123 (258)
T COG0730 78 ILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRL 123 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999987643
No 2
>PRK10621 hypothetical protein; Provisional
Probab=99.58 E-value=4.6e-14 Score=131.22 Aligned_cols=113 Identities=22% Similarity=0.343 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCChhhHHhhhHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHH
Q 022146 78 IVVSSIIGFFGAACGSVGGVGGGGIFVPMLNLIIGFDPKSSVALSKCMITGTAVATVVYNLRQRHPTLDMPVIDYDLALL 157 (302)
Q Consensus 78 ~ll~~liGflaG~isgl~GIGGG~I~VPiL~l~~glp~k~AvatS~~~i~~~s~s~~~~~~~~~~p~~~~p~Id~~lal~ 157 (302)
..+.+++|+++|+++|+.| |||.+.+|+|.. +|+|+++|++||.+.++.+++++.+.|.+++| +||+.+..
T Consensus 12 ~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~-~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~-------v~~~~~~~ 82 (266)
T PRK10621 12 LGVLFFVAMLAGFIDSIAG-GGGLLTIPALLA-AGMSPAQALATNKLQACGGSFSASLYFIRRKV-------VNLADQKL 82 (266)
T ss_pred HHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHH
Confidence 3456668999999999999 999999999974 79999999999999999999999998888886 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh
Q 022146 158 FQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLK 199 (302)
Q Consensus 158 l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~k 199 (302)
+.+++++|+.+|+.+...+|++.++.+++++++.++.+++++
T Consensus 83 l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 83 NIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM 124 (266)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999888765
No 3
>PRK10621 hypothetical protein; Provisional
Probab=99.55 E-value=9.9e-14 Score=128.99 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCChhhHHhhhHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHH
Q 022146 81 SSIIGFFGAACGSVGGVGGGGIFVPMLNLIIGFDPKSSVALSKCMITGTAVATVVYNLRQRHPTLDMPVIDYDLALLFQP 160 (302)
Q Consensus 81 ~~liGflaG~isgl~GIGGG~I~VPiL~l~~glp~k~AvatS~~~i~~~s~s~~~~~~~~~~p~~~~p~Id~~lal~l~~ 160 (302)
..++|+++|+++|++|+|||.+++|.+..++++|+++|++++.++.+.++++++..+...++ +||..++.+.+
T Consensus 142 ~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~-------v~~~~~l~l~~ 214 (266)
T PRK10621 142 ALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGK-------VIWATGFVMLV 214 (266)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe-------ehHHHHHHHHH
Confidence 34679999999999999999999999988899999999999999888888888877766664 89999999999
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022146 161 MLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGVE 202 (302)
Q Consensus 161 g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~~ 202 (302)
++++|+.+|++++++++++.+|.++..+++.++++++++.+.
T Consensus 215 g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~~~~ 256 (266)
T PRK10621 215 GQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHG 256 (266)
T ss_pred HHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988766
No 4
>COG0730 Predicted permeases [General function prediction only]
Probab=99.49 E-value=9.4e-13 Score=121.34 Aligned_cols=116 Identities=28% Similarity=0.405 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCChhhHHhhhHHHHHHHHHHHHHHHHH-hcCCCCCCCcccHHHHHH
Q 022146 79 VVSSIIGFFGAACGSVGGVGGGGIFVPMLNLIIGFDPKSSVALSKCMITGTAVATVVYNLR-QRHPTLDMPVIDYDLALL 157 (302)
Q Consensus 79 ll~~liGflaG~isgl~GIGGG~I~VPiL~l~~glp~k~AvatS~~~i~~~s~s~~~~~~~-~~~p~~~~p~Id~~lal~ 157 (302)
.....+|+++|+++|++|+|||...+|.+....+.|.+.+++||.+.++.++..+...+.. .++ +||..+..
T Consensus 139 ~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~ 211 (258)
T COG0730 139 ALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGA-------VDWPLALL 211 (258)
T ss_pred HHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCc-------ccHHHHHH
Confidence 3455788999999999999999999999999999999999999999999888887777666 564 99999988
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhh
Q 022146 158 FQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGV 201 (302)
Q Consensus 158 l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~ 201 (302)
+.+++++|+++|+++.++++++.+|.++.++++.++.+++++..
T Consensus 212 l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~~ 255 (258)
T COG0730 212 LAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRGL 255 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987754
No 5
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.43 E-value=1.5e-12 Score=117.52 Aligned_cols=110 Identities=25% Similarity=0.422 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHhCCChhhHHhhhHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHH
Q 022146 82 SIIGFFGAACGSVGGVGGGGIFVPMLNLIIGFDPKSSVALSKCMITGTAVATVVYNLRQRHPTLDMPVIDYDLALLFQPM 161 (302)
Q Consensus 82 ~liGflaG~isgl~GIGGG~I~VPiL~l~~glp~k~AvatS~~~i~~~s~s~~~~~~~~~~p~~~~p~Id~~lal~l~~g 161 (302)
+++++++|++.|+.|.|||.+.+|+|.. + +|+++|++++.+..+.++..+.+.+.++++ +||+....+.++
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~-~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~ 72 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILIL-F-LPPKQAVATSLFINLFTSLIAALRHRKHGN-------IDWKIVLPLIIG 72 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHH-H-cCHHHHHHHHHHHHHHHHHHHHHHHHHccc-------cchhhhhhhhhH
Confidence 4679999999999999999999999998 4 899999999999999999999888877764 999999999999
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhh
Q 022146 162 LVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKG 200 (302)
Q Consensus 162 ~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg 200 (302)
+++|+.+|+.+...+|++.++.++.++++..+.+++++.
T Consensus 73 ~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~ 111 (240)
T PF01925_consen 73 ALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKK 111 (240)
T ss_pred hHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998754
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.36 E-value=1e-11 Score=112.20 Aligned_cols=112 Identities=24% Similarity=0.359 Sum_probs=99.1
Q ss_pred HHHHHHHHHH-HHHHHhhcccchHHHHHHHHHHHhCCChhhHHhhhHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHH
Q 022146 78 IVVSSIIGFF-GAACGSVGGVGGGGIFVPMLNLIIGFDPKSSVALSKCMITGTAVATVVYNLRQRHPTLDMPVIDYDLAL 156 (302)
Q Consensus 78 ~ll~~liGfl-aG~isgl~GIGGG~I~VPiL~l~~glp~k~AvatS~~~i~~~s~s~~~~~~~~~~p~~~~p~Id~~lal 156 (302)
.+....+|++ +|+++|++|+|||.+.+|++....++|++++.+|+.++.+.++.++...|...+ .+||+...
T Consensus 125 ~~~~~~~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~ 197 (240)
T PF01925_consen 125 RWLLFLLGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILG-------DVDWPMLL 197 (240)
T ss_pred hhhhhhhhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cccHHHHH
Confidence 3334455555 999999999999999999999878999999999999999999998888777766 48898776
Q ss_pred H---HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 022146 157 L---FQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKA 196 (302)
Q Consensus 157 ~---l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~ 196 (302)
. +.+++++|+.+|.++.+++|++.+|.++.++++.++++|
T Consensus 198 ~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~l 240 (240)
T PF01925_consen 198 LSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLKL 240 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 6 999999999999999999999999999999999988764
No 7
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=88.96 E-value=2.3 Score=40.49 Aligned_cols=51 Identities=22% Similarity=0.211 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 022146 157 LFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGVETWKKE 207 (302)
Q Consensus 157 ~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~~~~k~E 207 (302)
.+.++.++.+.+|-..-..+|.++-..+-.+++++.|+||++.+.+.-..|
T Consensus 108 AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~ 158 (294)
T KOG2881|consen 108 ALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSE 158 (294)
T ss_pred HHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 366788888999977767888777777778888899999999986654443
No 8
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=88.75 E-value=8.3 Score=34.88 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhchH---------HHHHHHHHHHHHHHH
Q 022146 151 DYDLALLFQPMLVLGISIGVAFNVIFAD---------WMITVLLIILFIGMS 193 (302)
Q Consensus 151 d~~lal~l~~g~llGa~IGa~l~~~lp~---------~~L~~lf~ilLl~~~ 193 (302)
-++..++-..+.++|..+|..+...++. ..+..++.+++++++
T Consensus 139 ~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~ 190 (194)
T PF11833_consen 139 LGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLV 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3556666666677777777777766643 344555555554444
No 9
>COG2119 Predicted membrane protein [Function unknown]
Probab=86.25 E-value=4.7 Score=36.43 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=46.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhh
Q 022146 149 VIDYDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGV 201 (302)
Q Consensus 149 ~Id~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~ 201 (302)
.|-....+-+.+++++++..|-+++.++|.+.++.+-++++++.+...++...
T Consensus 134 ~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~~ 186 (190)
T COG2119 134 AVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQVF 186 (190)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777899999999999999999999999999999999999988887653
No 10
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=82.20 E-value=4.3 Score=36.80 Aligned_cols=50 Identities=8% Similarity=0.177 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022146 153 DLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGVE 202 (302)
Q Consensus 153 ~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~~ 202 (302)
..++.-..+..+|-.+|..+..+++.++-.++=.++|++++.+|++++++
T Consensus 35 ~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~ 84 (206)
T TIGR02840 35 IIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFR 84 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556778888888888999988877888888999999999998865
No 11
>PRK11469 hypothetical protein; Provisional
Probab=75.66 E-value=41 Score=30.11 Aligned_cols=47 Identities=13% Similarity=0.341 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022146 155 ALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGVE 202 (302)
Q Consensus 155 al~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~~ 202 (302)
+..-..+.++|-.+|..+..++++.. .++-..+|++++.+|++++++
T Consensus 44 g~~q~~m~~~g~~~G~~l~~~i~~~~-~~i~~~lL~~lG~~mi~e~~~ 90 (188)
T PRK11469 44 GAVETLTPLIGWGMGMLASRFVLEWN-HWIAFVLLIFLGGRMIIEGFR 90 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 34445566777778888888877754 677777889999999998754
No 12
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=68.40 E-value=24 Score=35.67 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccchhhhhc
Q 022146 263 ELGLLVAVWVIVLALQIAKVIICFVFTPPTLQL 295 (302)
Q Consensus 263 ~l~~l~~vw~~~l~l~i~k~~~~~~~~~~~~~~ 295 (302)
-..+++.+++.|+... ++++|+.+|-
T Consensus 227 ~~~vl~~vli~f~~~~-------~~~i~~~~va 252 (424)
T COG1055 227 SLVVLALVLIAFLLLP-------FLGIPVSLVA 252 (424)
T ss_pred HHHHHHHHHHHHHhhc-------ccCCCHHHHH
Confidence 4456777777777643 8888877663
No 13
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=67.77 E-value=16 Score=28.17 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Q 022146 150 IDYDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGM 192 (302)
Q Consensus 150 Id~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~ 192 (302)
+-.-..+-+.....+++.+|..+.+++|.+.++.+-+++++..
T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~f 77 (78)
T PF01169_consen 35 VFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLF 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 4445556678889999999999999999999999888877654
No 14
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=67.74 E-value=37 Score=23.95 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhh
Q 022146 154 LALLFQPMLVLGISIGVAFNVIFAD-WMITVLLIILFIGMSAKAFLKG 200 (302)
Q Consensus 154 lal~l~~g~llGa~IGa~l~~~lp~-~~L~~lf~ilLl~~~i~~l~kg 200 (302)
++.-+..+.++|..+|..+-++++. .....++.++=+..+++.++|.
T Consensus 6 lg~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~~~~~ 53 (55)
T PF09527_consen 6 LGFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYNVYRL 53 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888889999999888887 4455555555566666666553
No 15
>COG1971 Predicted membrane protein [Function unknown]
Probab=64.25 E-value=79 Score=28.71 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022146 156 LLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGVET 203 (302)
Q Consensus 156 l~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~~~ 203 (302)
..-.++.++|..+|-.+++++.+ .=.++=.+++++++++|++++++.
T Consensus 45 ~f~~i~pliG~~~g~~~s~~i~~-~~~wigf~lL~~lG~~mI~e~f~~ 91 (190)
T COG1971 45 VFQAIMPLIGWFIGKFLSTFIAE-WAHWIGFVLLIILGLKMIIEGFKN 91 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhch
Confidence 33445566666666666644433 344556677889999999999876
No 16
>PTZ00370 STEVOR; Provisional
Probab=63.95 E-value=39 Score=32.59 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 022146 164 LGISIGVAFNVIFA---DWMITVLLIILFIGMSAKAFLKGVETWKKET 208 (302)
Q Consensus 164 lGa~IGa~l~~~lp---~~~L~~lf~ilLl~~~i~~l~kg~~~~k~Et 208 (302)
.|..-|+..+...| ..++.++++++|+++=+++..+..+.||-|.
T Consensus 243 agtAAtaAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~ 290 (296)
T PTZ00370 243 AGTAASAASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHEC 290 (296)
T ss_pred cchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 33344444444444 3345556666666666666667777788775
No 17
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=61.33 E-value=1.7e+02 Score=30.52 Aligned_cols=44 Identities=32% Similarity=0.334 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhcccchHH-HHHHHHHHHhCCChhhHHhhhHHH
Q 022146 81 SSIIGFFGAACGSVGGVGGGG-IFVPMLNLIIGFDPKSSVALSKCM 125 (302)
Q Consensus 81 ~~liGflaG~isgl~GIGGG~-I~VPiL~l~~glp~k~AvatS~~~ 125 (302)
.++.-.+++|+=|..|.|-.. +..|+|. .+|+|+-.|+..++..
T Consensus 104 lli~~~Fg~flEgaaGFGtpvAI~aplLv-~LGf~P~~Aa~l~Li~ 148 (522)
T PF02652_consen 104 LLIAFGFGAFLEGAAGFGTPVAIAAPLLV-ALGFPPLQAAALCLIG 148 (522)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHH-HcCCChHHHHHHHHHH
Confidence 334445678999999999986 5556665 4899999999998875
No 18
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=58.55 E-value=73 Score=31.58 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCChhhHHhhhHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHH
Q 022146 78 IVVSSIIGFFGAACGSVGGVGGGGIFVPMLNLIIGFDPKSSVALSKCMITGTAVATVVYNLRQRHPTLDMPVIDYDLALL 157 (302)
Q Consensus 78 ~ll~~liGflaG~isgl~GIGGG~I~VPiL~l~~glp~k~AvatS~~~i~~~s~s~~~~~~~~~~p~~~~p~Id~~lal~ 157 (302)
..+.+.+++++|..+-....=.+.++.|++.. .+.|...++ .++.+..+.
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~------------------------a~v~~~~~~------~~~lP~wl~ 239 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLG------------------------AIVHFGGGI------TIQLPAWLL 239 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH------------------------HHhhcccce------eeeCCHHHH
Confidence 34445567777777777776666666666643 233333322 244444455
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 022146 158 FQPMLVLGISIGVAFNVIFADWMITVLLIILFI 190 (302)
Q Consensus 158 l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl 190 (302)
-..-.++|..||+++++..-....|.+...++.
T Consensus 240 ~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ 272 (352)
T COG3180 240 AVAQALIGALIGSRFDRSILREAKRLLPAILVS 272 (352)
T ss_pred HHHHHHHHHHHcccccHHHHHHhHhhcchHHHH
Confidence 566788999999998876655555544444433
No 19
>PRK10263 DNA translocase FtsK; Provisional
Probab=57.35 E-value=81 Score=36.47 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhchH
Q 022146 159 QPMLVLGISIGVAFNVIFAD 178 (302)
Q Consensus 159 ~~g~llGa~IGa~l~~~lp~ 178 (302)
..|+++|..++..+...+..
T Consensus 141 ~gGGIIG~lLs~lL~~LfG~ 160 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQPLLHS 160 (1355)
T ss_pred cccchHHHHHHHHHHHHHhH
Confidence 56888888888877777764
No 20
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=56.53 E-value=33 Score=25.67 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHhCCChhhHHhhhHHHHHHHHHHHHHHHHH
Q 022146 99 GGGIFVPMLNLIIGFDPKSSVALSKCMITGTAVATVVYNLR 139 (302)
Q Consensus 99 GG~I~VPiL~l~~glp~k~AvatS~~~i~~~s~s~~~~~~~ 139 (302)
+=.+.+|++..++|.+..+|.+.+..+...+.+-+.+||..
T Consensus 17 ~l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~~ 57 (67)
T PF05232_consen 17 ALLISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNWL 57 (67)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33578999999999999999999988888888878777763
No 21
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=56.44 E-value=29 Score=28.48 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=13.8
Q ss_pred ccchhHHHHHHHHHHHHHHH
Q 022146 258 NIYWKELGLLVAVWVIVLAL 277 (302)
Q Consensus 258 ~~~w~~l~~l~~vw~~~l~l 277 (302)
+..|...++|++.|+.|.+.
T Consensus 81 ~~~~LPW~LL~lSW~gF~~Y 100 (103)
T PF11169_consen 81 RSSWLPWGLLVLSWIGFIAY 100 (103)
T ss_pred cccchhHHHHHHHHHHHHHH
Confidence 33333445999999999873
No 22
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.64 E-value=17 Score=29.28 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 022146 13 FSAAAFIGLLLVASVSVSAQS 33 (302)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~ 33 (302)
+.++++|.++|+.|.-+++++
T Consensus 7 llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred HHHHHHHHHHHHHHhhhhhHH
Confidence 345556777777666666665
No 23
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=50.70 E-value=1.2e+02 Score=23.93 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=34.8
Q ss_pred hCCChhhHHhhhHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q 022146 111 IGFDPKSSVALSKCMITGTAVATVVYNLRQRHPTLDMPVIDYDLALLFQPMLVLGISIGVAFNVIFADWMITV 183 (302)
Q Consensus 111 ~glp~k~AvatS~~~i~~~s~s~~~~~~~~~~p~~~~p~Id~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~ 183 (302)
++.|--.=.+++...++...........++| ..|+++|+.+|..+....|+.....
T Consensus 9 ~~~~~~~W~~it~~~v~~~~~~~~~~~~~~R-----------------i~Gt~iG~~~~~~~~~~~~~~~~~~ 64 (128)
T PF13515_consen 9 LGLPHGYWAPITVVSVLSPSYGATVNRAIQR-----------------ILGTLIGVVLGLLLLYLFPGNYVLI 64 (128)
T ss_pred HcCCchHHHHHHHHHHHCCCHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4444444444555555544444444444444 6899999999999998888873333
No 24
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=50.44 E-value=65 Score=26.26 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHH
Q 022146 155 ALLFQPMLVLGISIGVAFNVIFADWM-ITVLLIILFIGMSAKAF 197 (302)
Q Consensus 155 al~l~~g~llGa~IGa~l~~~lp~~~-L~~lf~ilLl~~~i~~l 197 (302)
++-+++..++|+++|.++-.+++... .++.+.++=++++++..
T Consensus 49 G~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 49 GWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 34467788899999999999998643 33333333344444443
No 25
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=50.25 E-value=2e+02 Score=27.00 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=57.3
Q ss_pred HHhCCChhhHHhhhHHHHHHHHHHHHHHHHHhc-----CCCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 022146 109 LIIGFDPKSSVALSKCMITGTAVATVVYNLRQR-----HPTL---DMPVIDYDLALLFQPMLVLGISIGVAFNVIFADWM 180 (302)
Q Consensus 109 l~~glp~k~AvatS~~~i~~~s~s~~~~~~~~~-----~p~~---~~p~Id~~lal~l~~g~llGa~IGa~l~~~lp~~~ 180 (302)
.++|.+..........+-+++.++-++||.+.- +... ....-+++....+.+++++-+.+|..+-..+.+..
T Consensus 28 ~llg~~~~~~~~f~v~lhlGtllAvl~~fr~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiatip~~v~G~~~~~~i~~~~ 107 (259)
T PF02673_consen 28 HLLGWDPEPGLAFDVFLHLGTLLAVLIYFRKDIWRLLKGFFRGLRGRSNPDRRLLLLIIIATIPTGVVGLLFKDFIEALF 107 (259)
T ss_pred HHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346888766666667777777777666655321 1000 01124678888899999999999988777776655
Q ss_pred H--HHHHHHHHHHHHHHHHH
Q 022146 181 I--TVLLIILFIGMSAKAFL 198 (302)
Q Consensus 181 L--~~lf~ilLl~~~i~~l~ 198 (302)
. ....++.+++.++-++.
T Consensus 108 ~~~~~~v~~~Li~~g~lL~~ 127 (259)
T PF02673_consen 108 FSSPLVVAIALIITGLLLWL 127 (259)
T ss_pred hhchHHHHHHHHHHHHHHHH
Confidence 2 23455566666665554
No 26
>COG2119 Predicted membrane protein [Function unknown]
Probab=49.90 E-value=1.7e+02 Score=26.52 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhh
Q 022146 150 IDYDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKG 200 (302)
Q Consensus 150 Id~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg 200 (302)
|--....-+..+..+.+.+|......+|++.+.+..++.++..+++++...
T Consensus 36 v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~ed 86 (190)
T COG2119 36 VFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIED 86 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhccc
Confidence 555566677788899999999999999999999999999999999998765
No 27
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=49.07 E-value=2.1e+02 Score=26.98 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhchHH--HHHHHHHHHHHHHHHHHHHhhhhh
Q 022146 150 IDYDLALLFQPMLVLGISIGVAFNVIFADW--MITVLLIILFIGMSAKAFLKGVET 203 (302)
Q Consensus 150 Id~~lal~l~~g~llGa~IGa~l~~~lp~~--~L~~lf~ilLl~~~i~~l~kg~~~ 203 (302)
+||+..+.+..|..+|..+.+++..++=+. .....|.+=++..++..++|..+.
T Consensus 52 ~~~~fL~~l~~G~~~gi~~~s~~i~~ll~~yp~~t~~fF~GLIlgSip~l~k~~~~ 107 (257)
T PF04018_consen 52 INLKFLLPLGIGILIGILLFSKVISYLLENYPIPTYSFFFGLILGSIPFLYKEIKK 107 (257)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999987765443 223333333344555555554444
No 28
>TIGR03727 urea_t_UrtC_arc urea ABC transporter, permease protein UrtC, archaeal type. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtC subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=44.35 E-value=3.2e+02 Score=26.86 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=38.9
Q ss_pred HHHHHHhCCChhhHHhhhHHHHH-HHHHHHHHHHHHh--cCCCCCCCcccHHH--HHHH-----HHHHHHHHHHHHHHHH
Q 022146 105 PMLNLIIGFDPKSSVALSKCMIT-GTAVATVVYNLRQ--RHPTLDMPVIDYDL--ALLF-----QPMLVLGISIGVAFNV 174 (302)
Q Consensus 105 PiL~l~~glp~k~AvatS~~~i~-~~s~s~~~~~~~~--~~p~~~~p~Id~~l--al~l-----~~g~llGa~IGa~l~~ 174 (302)
|-.....|+|++.....+-.... .+.+++..+-... -+|+. .++.. .... ..+++.|+.+|+.+..
T Consensus 224 ~~aA~~~Gi~v~~~~~~~f~is~~laglaG~l~a~~~~~v~p~~----~~~~~~~~~~~~~vlGG~gs~~G~i~Ga~ll~ 299 (364)
T TIGR03727 224 EERTEMFGYNVKKIKLVVFTFGGALAGLSGVFYANWGNYIDPSV----FTILFATLPVVWVSLGGRESLLGAIVATVAIE 299 (364)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc----ccHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 55556678888777666654443 4555565544333 33431 23322 1111 2257788888888776
Q ss_pred hchH
Q 022146 175 IFAD 178 (302)
Q Consensus 175 ~lp~ 178 (302)
.+++
T Consensus 300 ~l~~ 303 (364)
T TIGR03727 300 WLRK 303 (364)
T ss_pred HHHH
Confidence 6664
No 29
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=43.39 E-value=2.7e+02 Score=27.39 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 022146 160 PMLVLGISIGVAFNVIF 176 (302)
Q Consensus 160 ~g~llGa~IGa~l~~~l 176 (302)
.+.++|..++..+....
T Consensus 380 lg~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 380 CAVLIGPPLAGRLVDAT 396 (455)
T ss_pred HHHHccccceeeeehhc
Confidence 34444454544444444
No 30
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=42.68 E-value=92 Score=21.92 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=10.7
Q ss_pred HHHhhhhhhhhhhHhHHHHH
Q 022146 196 AFLKGVETWKKETITKVEAA 215 (302)
Q Consensus 196 ~l~kg~~~~k~Et~~~~~~~ 215 (302)
++++.+++-+..+..|+|.+
T Consensus 24 ~IyQkikqIrgKkk~KKeie 43 (49)
T PF11044_consen 24 SIYQKIKQIRGKKKEKKEIE 43 (49)
T ss_pred HHHHHHHHHHhhhhhHHHHH
Confidence 34556666665555555533
No 31
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=42.30 E-value=78 Score=28.46 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 022146 150 IDYDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSA 194 (302)
Q Consensus 150 Id~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i 194 (302)
..|-.+......+.++...+-..--+.....+..+|+.+|+.++.
T Consensus 50 m~l~s~~~v~vFG~lTl~f~~d~FIKwK~TIi~~lFa~~Llgs~~ 94 (180)
T COG2917 50 MQLISGVVVVVFGGLTLIFHNDTFIKWKPTIIYWLFALVLLGSQF 94 (180)
T ss_pred HHHHHHHHHHHhchhHhhccCcceEEeeHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555445555667777888887776554
No 32
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=41.91 E-value=2.6e+02 Score=25.17 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022146 151 DYDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGVETW 204 (302)
Q Consensus 151 d~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~~~~ 204 (302)
.|...+.=....++|...+-... .....+..++++.+++.++--..-+++.+
T Consensus 75 ~W~lll~Gil~i~~gil~~~~~~--~~~~~l~~lia~~~i~~GI~ri~~~~~~~ 126 (185)
T COG3247 75 FWPLLLSGILSILLGILAGFNPG--LGALVLTYLIAIWFIASGILRIVVAFRLR 126 (185)
T ss_pred chHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 47764444455555555554333 55667888888888888876665555443
No 33
>COG4129 Predicted membrane protein [Function unknown]
Probab=41.29 E-value=1.5e+02 Score=29.09 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=19.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcccch
Q 022146 72 IKFGWKIVVSSIIGFFGAACGSVGGVGG 99 (302)
Q Consensus 72 ~~~~~~~ll~~liGflaG~isgl~GIGG 99 (302)
+..++|++-..+..+++-.++.++|...
T Consensus 7 ~~ig~RtlKt~ia~~La~~ia~~l~~~~ 34 (332)
T COG4129 7 RKIGARTLKTGLAAGLALLIAHLLGLPQ 34 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3466777777777777777777777665
No 34
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=40.85 E-value=4.2e+02 Score=27.62 Aligned_cols=48 Identities=25% Similarity=0.220 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCChhhHHhhhHHHHH
Q 022146 80 VSSIIGFFGAACGSVGGVGGGGIFVPMLNLIIGFDPKSSVALSKCMIT 127 (302)
Q Consensus 80 l~~liGflaG~isgl~GIGGG~I~VPiL~l~~glp~k~AvatS~~~i~ 127 (302)
+.++.-.+++|+=|+.|.|-...+.+-+..-+|++|-.|+.+++....
T Consensus 109 ~llI~~~Fg~flEg~aGFGtpvAI~aplLv~LGf~Pl~Aa~i~Li~ns 156 (530)
T TIGR00795 109 VLLIGFCFGAFLEGAAGFGTPVAITAAILVGLGFKPLYAAGLCLIANT 156 (530)
T ss_pred HHHHHHHHHHHHHHhhccCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 344455578999999999988766555555699999999999988654
No 35
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=39.48 E-value=29 Score=27.94 Aligned_cols=26 Identities=23% Similarity=0.744 Sum_probs=22.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhh
Q 022146 256 LKNIYWKELGLLVAVWVIVLALQIAK 281 (302)
Q Consensus 256 ~~~~~w~~l~~l~~vw~~~l~l~i~k 281 (302)
..+-.|+++++++.-|+.|++++++=
T Consensus 44 ~~sh~WRN~GIli~f~i~f~~~~~~~ 69 (103)
T PF06422_consen 44 SYSHRWRNFGILIAFWIFFIVLTLLA 69 (103)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999988764
No 36
>PLN00151 potassium transporter; Provisional
Probab=38.33 E-value=4.4e+02 Score=29.32 Aligned_cols=40 Identities=10% Similarity=0.024 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 022146 151 DYDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFI 190 (302)
Q Consensus 151 d~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl 190 (302)
-+-+...+..+.+=+.++++.+.+....-++.++++.+++
T Consensus 527 ~~~~~f~~~F~~ie~~f~sA~l~Ki~~GGW~Pl~la~v~~ 566 (852)
T PLN00151 527 FLVLCFPVVFLSVELVFFSSVLSSVGDGGWIPLVFASVFL 566 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 3344444555666677888888877777777777766553
No 37
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=37.33 E-value=1.2e+02 Score=32.14 Aligned_cols=29 Identities=10% Similarity=0.295 Sum_probs=16.2
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 022146 5 GSEWYQWRFSAAAFIGLLLVASVSVSAQSTL 35 (302)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (302)
|..|.-|-..-++.|+.-+. ++.+.-|+.
T Consensus 262 ~~~~~v~~l~q~l~Faagi~--Ill~GVRmf 290 (602)
T PRK09548 262 KTHWFIYILETGLKFAVAIQ--VIVIGVRMF 290 (602)
T ss_pred CCcEEehHHHhHHHHHHHHH--HHHHhHHHH
Confidence 66777776666666654432 233455543
No 38
>COG4129 Predicted membrane protein [Function unknown]
Probab=36.03 E-value=1.9e+02 Score=28.38 Aligned_cols=19 Identities=11% Similarity=0.438 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhch
Q 022146 159 QPMLVLGISIGVAFNVIFA 177 (302)
Q Consensus 159 ~~g~llGa~IGa~l~~~lp 177 (302)
..-.++|+.++..++.++|
T Consensus 130 ~l~~~vG~~~a~lvn~~~~ 148 (332)
T COG4129 130 FLLVFVGVGVAFLVNLVMP 148 (332)
T ss_pred HHHHHHHHHHHHHHhhhcC
Confidence 4566778888877777665
No 39
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=35.75 E-value=78 Score=30.55 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=24.3
Q ss_pred HHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 022146 166 ISIGVAFNVIFA---DWMITVLLIILFIGMSAKAFLKGVETWKKET 208 (302)
Q Consensus 166 a~IGa~l~~~lp---~~~L~~lf~ilLl~~~i~~l~kg~~~~k~Et 208 (302)
...++..+...| ..++.++++++|+++=+++..+..+.||-|.
T Consensus 249 tAAtaA~aaF~Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe~ 294 (295)
T TIGR01478 249 RAASAATSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKSWKHEC 294 (295)
T ss_pred hHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 333444444444 3345555666666666666667777787664
No 40
>PLN00148 potassium transporter; Provisional
Probab=35.63 E-value=6.2e+02 Score=27.91 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 022146 152 YDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFI 190 (302)
Q Consensus 152 ~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl 190 (302)
+-....+..+.+=+.++++.+.+....-++.++++.+++
T Consensus 451 ~~~~f~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~ 489 (785)
T PLN00148 451 LAALFLLFFGFIEGVYLSAALMKVPQGGWVPLVLSAIFM 489 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 334444555666677888888887777777777776553
No 41
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=34.70 E-value=1.8e+02 Score=29.99 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=16.4
Q ss_pred HHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 022146 136 YNLRQRHPTLDMPVIDYDLALLFQPMLVLGISIG 169 (302)
Q Consensus 136 ~~~~~~~p~~~~p~Id~~lal~l~~g~llGa~IG 169 (302)
.|+..-.|+.-++...--..+....|.++|..+|
T Consensus 139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 139 MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 3344445555555444444444444445554444
No 42
>PRK03557 zinc transporter ZitB; Provisional
Probab=34.06 E-value=4.2e+02 Score=25.21 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 022146 151 DYDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGVETWK 205 (302)
Q Consensus 151 d~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~~~~k 205 (302)
++..-.+...+.++|..++.......-|....++++++++..+++++++.....-
T Consensus 159 h~~~D~l~s~~vlv~~~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Ll 213 (312)
T PRK03557 159 HVLGDLLGSVGAIIAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELL 213 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433344444555555554433333457788899999999999999998876544
No 43
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=33.94 E-value=2e+02 Score=29.22 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhCCChhhHHhhhHH
Q 022146 100 GGIFVPMLNLIIGFDPKSSVALSKC 124 (302)
Q Consensus 100 G~I~VPiL~l~~glp~k~AvatS~~ 124 (302)
..+++|++.. +|+|+..+++...+
T Consensus 143 ~~il~pi~~a-lG~d~~~a~a~v~~ 166 (465)
T PF03606_consen 143 MPILIPILIA-LGYDPITAAAAVIL 166 (465)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 4555666654 78888777766543
No 44
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=33.79 E-value=2.6e+02 Score=24.85 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhh
Q 022146 165 GISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGV 201 (302)
Q Consensus 165 Ga~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~ 201 (302)
-..+|+.+.+.+ +.++.+.+++|++.+++++....
T Consensus 48 ~i~~~~~ll~~~--~~i~~igG~~Ll~~a~k~~~~~~ 82 (183)
T PF03741_consen 48 FIFLASWLLSIF--PWILLIGGLFLLYIAIKLLHEER 82 (183)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555555554 67899999999999999887654
No 45
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=32.54 E-value=2.9e+02 Score=25.39 Aligned_cols=25 Identities=24% Similarity=0.111 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 022146 152 YDLALLFQPMLVLGISIGVAFNVIF 176 (302)
Q Consensus 152 ~~lal~l~~g~llGa~IGa~l~~~l 176 (302)
++....+.+|+++|+.+|......-
T Consensus 9 ~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 9 LRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778889999999888665433
No 46
>PLN00150 potassium ion transporter family protein; Provisional
Probab=32.39 E-value=7.2e+02 Score=27.42 Aligned_cols=40 Identities=10% Similarity=0.134 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q 022146 152 YDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIG 191 (302)
Q Consensus 152 ~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~ 191 (302)
+-....+..+.+=+.++++.+.+....-++.++++.+++.
T Consensus 468 ~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~ 507 (779)
T PLN00150 468 LALLFFTVFAIIEGIYFSAVLFKVTQGGWVPLVIAAVFGT 507 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHH
Confidence 3344444556666778888888777777777777665533
No 47
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=31.94 E-value=62 Score=20.71 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=17.0
Q ss_pred ccchhhHHHHHHHHHHHHHHH
Q 022146 6 SEWYQWRFSAAAFIGLLLVAS 26 (302)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (302)
+.||+||..+....+++++..
T Consensus 3 ~~~~~~H~~~g~~~~~~ll~~ 23 (34)
T PF13172_consen 3 KFWRKIHRWLGLIAAIFLLLL 23 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 568999999998888877653
No 48
>PRK09695 glycolate transporter; Provisional
Probab=31.87 E-value=4.3e+02 Score=27.83 Aligned_cols=48 Identities=27% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCChhhHHhhhHHHHH
Q 022146 80 VSSIIGFFGAACGSVGGVGGGGIFVPMLNLIIGFDPKSSVALSKCMIT 127 (302)
Q Consensus 80 l~~liGflaG~isgl~GIGGG~I~VPiL~l~~glp~k~AvatS~~~i~ 127 (302)
+.++.-.+++|+=|+.|.|-...+.+-+..-+|++|-.|+..++....
T Consensus 118 ~LlI~~~Fg~FlEg~aGFGtPvAI~aplLv~LGF~Pl~Aa~i~Li~ns 165 (560)
T PRK09695 118 VLLIGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLCLIANT 165 (560)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 333444578999999999988777666656699999999999887665
No 49
>PRK10420 L-lactate permease; Provisional
Probab=31.82 E-value=2.2e+02 Score=29.86 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCChhhHHhhhHHHHH
Q 022146 81 SSIIGFFGAACGSVGGVGGGGIFVPMLNLIIGFDPKSSVALSKCMIT 127 (302)
Q Consensus 81 ~~liGflaG~isgl~GIGGG~I~VPiL~l~~glp~k~AvatS~~~i~ 127 (302)
.++.-.+++|+=|+.|.|-...+.+-+..-+|++|-.|+..++....
T Consensus 119 LlI~~~Fg~FlEg~AGFGtpvAI~aplLv~LGF~Pl~Aa~i~Li~ns 165 (551)
T PRK10420 119 LIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNT 165 (551)
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 33444568999999999988776665556699999999999887765
No 50
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=30.93 E-value=6e+02 Score=26.55 Aligned_cols=31 Identities=6% Similarity=0.191 Sum_probs=20.9
Q ss_pred HHHHHHhchHH--HHHHHHHHHHHHHHHHHHHh
Q 022146 169 GVAFNVIFADW--MITVLLIILFIGMSAKAFLK 199 (302)
Q Consensus 169 Ga~l~~~lp~~--~L~~lf~ilLl~~~i~~l~k 199 (302)
+.++..+...| .++.+++++++.+++.++.+
T Consensus 349 ~~~~lpk~g~wm~~~k~~~G~~ll~~~~~ll~~ 381 (571)
T PRK00293 349 GNKLLPKSGPWMNQVKTAFGFVLLALPVFLLER 381 (571)
T ss_pred HHhhcccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455 57788888888888887663
No 51
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.70 E-value=3.3e+02 Score=22.92 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 022146 159 QPMLVLGISIGVAFNVIFADWMITVLLIILF 189 (302)
Q Consensus 159 ~~g~llGa~IGa~l~~~lp~~~L~~lf~ilL 189 (302)
..+.++|+.+|..+...++...+...+.+++
T Consensus 55 i~~~~iG~~~a~~~~~~~g~~~~~~~l~v~i 85 (141)
T PF06081_consen 55 ILGTLIGALLALLFFLILGYNPLSIGLAVII 85 (141)
T ss_pred HHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 5677888888888877777766665555444
No 52
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=30.10 E-value=1.2e+02 Score=28.15 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhchHHHHH---HHHHHHHHHHHHHHHHhh
Q 022146 160 PMLVLGISIGVAFNVIFADWMIT---VLLIILFIGMSAKAFLKG 200 (302)
Q Consensus 160 ~g~llGa~IGa~l~~~lp~~~L~---~lf~ilLl~~~i~~l~kg 200 (302)
.+.++|+.+|..+.+++|++.-. ..+++..+.++++|..+.
T Consensus 10 l~Il~G~iiG~l~~~klper~k~~l~~~~Gl~~l~iGI~m~~~~ 53 (228)
T COG1811 10 LAILIGGIIGLLIGKKLPERIKDILMQCLGLAILGIGIKMALQA 53 (228)
T ss_pred HHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777777777776433 344555566677666543
No 53
>PRK10995 inner membrane protein; Provisional
Probab=30.06 E-value=3.4e+02 Score=24.68 Aligned_cols=51 Identities=4% Similarity=-0.014 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHHHHhh
Q 022146 150 IDYDLALLFQPMLVLGISIGVAFNVIFA--DWMITVLLIILFIGMSAKAFLKG 200 (302)
Q Consensus 150 Id~~lal~l~~g~llGa~IGa~l~~~lp--~~~L~~lf~ilLl~~~i~~l~kg 200 (302)
+-++..+....-.++.+..|..+.+.+. ...+|+.=+++++.++++|++..
T Consensus 43 ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 43 QALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5566667677777778888888877554 66789999999999999998643
No 54
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=30.06 E-value=1.1e+02 Score=28.49 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhchHHHHH---HHHHHHHHHHHHHHHHhh
Q 022146 160 PMLVLGISIGVAFNVIFADWMIT---VLLIILFIGMSAKAFLKG 200 (302)
Q Consensus 160 ~g~llGa~IGa~l~~~lp~~~L~---~lf~ilLl~~~i~~l~kg 200 (302)
.+.++|+.+|..+.+++|+++-+ ..+++..+.+++++..+.
T Consensus 9 ~aIl~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~ 52 (226)
T PF04474_consen 9 LAILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKG 52 (226)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45567777777777777776533 445566666777766655
No 55
>PF10999 DUF2839: Protein of unknown function (DUF2839); InterPro: IPR021262 This bacterial family of unknown function appear to be restricted to Cyanobacteria.
Probab=29.82 E-value=45 Score=25.38 Aligned_cols=23 Identities=30% Similarity=0.733 Sum_probs=19.2
Q ss_pred cccccchhHHHHHHHHHHHHHHH
Q 022146 255 ILKNIYWKELGLLVAVWVIVLAL 277 (302)
Q Consensus 255 ~~~~~~w~~l~~l~~vw~~~l~l 277 (302)
+..+.+|--+++|+++|+.+..+
T Consensus 39 ~ttkg~w~gig~l~~~wi~vrfi 61 (68)
T PF10999_consen 39 LTTKGPWIGIGILVLIWIIVRFI 61 (68)
T ss_pred HhhcccchhHHHHHHHHHHHHhh
Confidence 44489999999999999988754
No 56
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=29.42 E-value=1.8e+02 Score=22.52 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhh
Q 022146 162 LVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKG 200 (302)
Q Consensus 162 ~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg 200 (302)
.+.|+..|+.+... |.+-.+....+++.+..+.++.
T Consensus 38 vLaGTaaGafl~e~---w~iaal~l~~LF~lsl~~~lRa 73 (75)
T PF05052_consen 38 VLAGTAAGAFLGEH---WVIAALTLTGLFVLSLTRALRA 73 (75)
T ss_pred HHccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444442 5555555555555555554443
No 57
>COG3619 Predicted membrane protein [Function unknown]
Probab=28.55 E-value=4.8e+02 Score=24.20 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q 022146 149 VIDYDLALLFQPMLVLGISIGVAFNVIFADWMITV 183 (302)
Q Consensus 149 ~Id~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~ 183 (302)
..||..-..+.++-+.|+.+|+.+...+.+..+-.
T Consensus 168 ~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~ 202 (226)
T COG3619 168 LRDWLIYLSLILSFIVGAICGALLTLFFGLKALWV 202 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 57888888899999999999999999888775543
No 58
>PLN00149 potassium transporter; Provisional
Probab=28.52 E-value=8.3e+02 Score=26.95 Aligned_cols=38 Identities=8% Similarity=0.219 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 022146 153 DLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFI 190 (302)
Q Consensus 153 ~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl 190 (302)
-.......+.+=+.++.+.+.+....-++.++++.+++
T Consensus 456 ~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~ 493 (779)
T PLN00149 456 AICFIFFFGTIEALYFSASLIKFLEGAWVPIALSFIFL 493 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 34444445566667777777777777777777766553
No 59
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=27.97 E-value=47 Score=22.72 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=14.5
Q ss_pred HHhhcccchHHHHHHHHHH
Q 022146 91 CGSVGGVGGGGIFVPMLNL 109 (302)
Q Consensus 91 isgl~GIGGG~I~VPiL~l 109 (302)
.+++.++|++...+|+...
T Consensus 19 t~~~gavG~~~~a~Pfv~s 37 (41)
T PF10399_consen 19 TSAVGAVGAAAAAWPFVSS 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4466677889999999864
No 60
>PRK01844 hypothetical protein; Provisional
Probab=27.59 E-value=61 Score=24.96 Aligned_cols=21 Identities=5% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 022146 76 WKIVVSSIIGFFGAACGSVGG 96 (302)
Q Consensus 76 ~~~ll~~liGflaG~isgl~G 96 (302)
|..++..++++++|++.|+++
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 61
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=26.94 E-value=3.8e+02 Score=22.49 Aligned_cols=43 Identities=12% Similarity=0.083 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhccc-chHHHHHHHHHHHhCCChhhHHhhhHHHH
Q 022146 84 IGFFGAACGSVGGV-GGGGIFVPMLNLIIGFDPKSSVALSKCMI 126 (302)
Q Consensus 84 iGflaG~isgl~GI-GGG~I~VPiL~l~~glp~k~AvatS~~~i 126 (302)
.|+..|++.|+.=+ |...+..-++..++..+.-.|...+.+..
T Consensus 24 ~g~AiG~fig~~P~~g~~~~l~~~la~~~r~N~~aa~~~~~i~n 67 (154)
T PF09835_consen 24 LGFAIGVFIGFLPIFGLQTVLAIALALLFRLNKPAAILGTWISN 67 (154)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 45555555555555 66777777777778877776666655533
No 62
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=25.83 E-value=5.5e+02 Score=23.92 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 022146 150 IDYDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFL 198 (302)
Q Consensus 150 Id~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~ 198 (302)
--|...+.+..|++.-..+........|.+..+-.++-.+-.++-++-.
T Consensus 70 ~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ 118 (284)
T PF12805_consen 70 EALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRA 118 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888888888999988888887777666655444
No 63
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=25.41 E-value=1.8e+02 Score=24.59 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=17.7
Q ss_pred ccccccchhHHHHHHHHHHH-HHHHHH
Q 022146 254 SILKNIYWKELGLLVAVWVI-VLALQI 279 (302)
Q Consensus 254 ~~~~~~~w~~l~~l~~vw~~-~l~l~i 279 (302)
+..+.+.||-++.+++..+. +++.+.
T Consensus 103 ~Fie~is~Kt~~fll~~~~~~~~~~N~ 129 (135)
T PF10104_consen 103 SFIEPISWKTLIFLLLIILIWIFASNF 129 (135)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35668999999887765544 555444
No 64
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=24.40 E-value=4.5e+02 Score=28.03 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=21.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhcc
Q 022146 6 SEWYQWRFSAAAFIGLLLVASVSVSAQS 33 (302)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (302)
.+|.+|-....+..+-++++..+.+..=
T Consensus 287 P~~aliP~viLAT~ATVIASQAvISGaF 314 (627)
T COG3158 287 PDWALIPLVILATAATVIASQAVISGAF 314 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 4788888888888888888777766654
No 65
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=23.98 E-value=3.7e+02 Score=24.55 Aligned_cols=18 Identities=6% Similarity=0.158 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 022146 121 LSKCMITGTAVATVVYNL 138 (302)
Q Consensus 121 tS~~~i~~~s~s~~~~~~ 138 (302)
.+..+++++++++++=.+
T Consensus 109 l~l~LIlGGAlGNlIDRl 126 (201)
T PRK14766 109 IVLSILLAGSWGNLLARL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566778888999888555
No 66
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=23.62 E-value=5.2e+02 Score=23.19 Aligned_cols=121 Identities=11% Similarity=-0.011 Sum_probs=0.0
Q ss_pred CChhhHHhhhHHHHH-HHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH--hchHHHHHHHHHHHH
Q 022146 113 FDPKSSVALSKCMIT-GTAVATVVYNLRQRHPTLDMPVIDYDLALLFQPMLVLGISIGVAFNV--IFADWMITVLLIILF 189 (302)
Q Consensus 113 lp~k~AvatS~~~i~-~~s~s~~~~~~~~~~p~~~~p~Id~~lal~l~~g~llGa~IGa~l~~--~lp~~~L~~lf~ilL 189 (302)
++.-....++.+.+. .-...-++.-+.++.+..++-.+-.+..+......++-...|..+.+ .++-..+++.=++++
T Consensus 1 ~~~~~~~~~~lf~iinP~g~ip~f~~lt~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL 80 (203)
T PF01914_consen 1 FSFFISAFITLFAIINPIGNIPIFLSLTKGMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIIL 80 (203)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhhhhhHhHHHHHHhhhhcCCCCccccccccCCCCCC
Q 022146 190 IGMSAKAFLKGVETWKKETITKVEAAKRLELDRNGDQAEEFKCEPENLSN 239 (302)
Q Consensus 190 l~~~i~~l~kg~~~~k~Et~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (302)
+.++++|+...-+. ++...+++.+..+.++.+-.+--.|+..||
T Consensus 81 ~~ia~~ml~~~~~~------~~~~~~~~~~~~~~~~~ai~PLa~PllaGP 124 (203)
T PF01914_consen 81 FLIALEMLFGSPSS------EKSSPDEKEEAKDAEDIAIVPLAIPLLAGP 124 (203)
T ss_pred HHHHHHHhCCCCcc------cccccchhhhhcccccceecccchhhccCh
No 67
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=23.12 E-value=4.5e+02 Score=23.20 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=8.9
Q ss_pred hchHHHHHHHHHHHHHH
Q 022146 175 IFADWMITVLLIILFIG 191 (302)
Q Consensus 175 ~lp~~~L~~lf~ilLl~ 191 (302)
+..+..+..++++.++.
T Consensus 75 k~KpTii~~l~a~~ll~ 91 (176)
T PF04279_consen 75 KWKPTIINWLFAAVLLG 91 (176)
T ss_pred ehhHHHHHHHHHHHHHH
Confidence 44455555665555543
No 68
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=22.60 E-value=1e+03 Score=25.90 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhh
Q 022146 155 ALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGV 201 (302)
Q Consensus 155 al~l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~ 201 (302)
......+.+=+.++++.+.+....-.+.++++.+++.+ ...+.+|.
T Consensus 425 ~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~i-M~~W~~G~ 470 (688)
T TIGR00794 425 LFLLVFLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSV-MTTWRYGR 470 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHH
Confidence 33344555667788888887777777777776655332 22444443
No 69
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=22.48 E-value=8e+02 Score=26.35 Aligned_cols=43 Identities=2% Similarity=-0.032 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhh
Q 022146 158 FQPMLVLGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLKGV 201 (302)
Q Consensus 158 l~~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~kg~ 201 (302)
...+.+=++++++.+.+....-.+.++++.+++. ....+.+|.
T Consensus 402 ~~f~~id~~ff~anl~Ki~~GGW~pl~ia~v~~~-iM~tW~~G~ 444 (622)
T PRK10745 402 IAFLCIDIPLFSANLDKLLSGGWLPLSLGLVMFI-VMTTWKSER 444 (622)
T ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH-HHHHHHHhH
Confidence 3345555677888887777777777777665533 223445553
No 70
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=22.38 E-value=5.8e+02 Score=23.00 Aligned_cols=36 Identities=22% Similarity=0.136 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh
Q 022146 164 LGISIGVAFNVIFADWMITVLLIILFIGMSAKAFLK 199 (302)
Q Consensus 164 lGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i~~l~k 199 (302)
..+.+++.....+|+..+.=+++++=+++|+|.+++
T Consensus 41 ~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~~ 76 (191)
T PF03596_consen 41 LASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALFS 76 (191)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 335557777889998888778888889999987764
No 71
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=21.79 E-value=4.3e+02 Score=24.93 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 022146 151 DYDLALLFQPMLVLGISIGVAFNVIFADWMITVLL 185 (302)
Q Consensus 151 d~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf 185 (302)
|+....++..|.++|..+-+++.+++=++.-+..+
T Consensus 187 ~~~~L~~f~~G~~~Gi~~~skll~~ll~~~~~~t~ 221 (257)
T PF04018_consen 187 NIPVLIPFGIGVVIGILLFSKLLSYLLKRYRSQTY 221 (257)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999988887766555444333
No 72
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=21.69 E-value=5.5e+02 Score=22.51 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 022146 150 IDYDLALLFQPMLVLGISIGVAFNVIFADWMITVLLII 187 (302)
Q Consensus 150 Id~~lal~l~~g~llGa~IGa~l~~~lp~~~L~~lf~i 187 (302)
-++..-.....+-++|+.+|+.+.+++..+.+-....+
T Consensus 163 ~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~al~~~~~~ 200 (209)
T PF06912_consen 163 RRALRYLLIILSFFIGAILGALLYRRLGFWALLLPALL 200 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455566777888999999999999886554443333
No 73
>PRK10692 hypothetical protein; Provisional
Probab=20.75 E-value=4.5e+02 Score=21.11 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 022146 158 FQPMLVLGISIGV 170 (302)
Q Consensus 158 l~~g~llGa~IGa 170 (302)
+.=++++|.++|+
T Consensus 42 ~~~gal~~IFiGA 54 (92)
T PRK10692 42 FAHGALLSIFVGA 54 (92)
T ss_pred HHhhHHHHHHHHH
Confidence 4445555555554
No 74
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=20.25 E-value=6.5e+02 Score=27.18 Aligned_cols=86 Identities=14% Similarity=0.044 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHhCCChhhHHhhhHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022146 97 VGGGGIFVPMLNLIIGFDPKSSVALSKCMITGTAVATVVYNLRQRHPTLDMPVIDYDLALLFQPMLVLGISIGVAFNVIF 176 (302)
Q Consensus 97 IGGG~I~VPiL~l~~glp~k~AvatS~~~i~~~s~s~~~~~~~~~~p~~~~p~Id~~lal~l~~g~llGa~IGa~l~~~l 176 (302)
++-+...--.+...++++--.=+.++.++++-...+.+.....++ +.|+++|+.+|..+...+
T Consensus 389 ~ala~~~a~~i~~~l~l~~gyWi~lTv~~V~qP~~~~T~~R~~~R-----------------i~GTl~G~llg~~l~~l~ 451 (701)
T TIGR01667 389 LSLVVMLGYAILMGTALHLGYWILLTTLFVCQPNYGATRLRLVQR-----------------IIGTVVGLVIGVALHFLI 451 (701)
T ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHHHHHhCccHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHc
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 022146 177 ADWMITVLLIILFIGMSAKAFLK 199 (302)
Q Consensus 177 p~~~L~~lf~ilLl~~~i~~l~k 199 (302)
|+.....++.++..+.......+
T Consensus 452 p~~~~~l~l~v~~~~~~~~~~~~ 474 (701)
T TIGR01667 452 PSLEGQLTLMVITGVAFFAFRSK 474 (701)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh
No 75
>PRK11111 hypothetical protein; Provisional
Probab=20.00 E-value=3.9e+02 Score=24.34 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=38.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHH
Q 022146 149 VIDYDLALLFQPMLVLGISIGVAFNVIF--ADWMITVLLIILFIGMSAKAFL 198 (302)
Q Consensus 149 ~Id~~lal~l~~g~llGa~IGa~l~~~l--p~~~L~~lf~ilLl~~~i~~l~ 198 (302)
.+-++..+......++-..+|-.+.+.+ +-..+|+.=+++++.++++|+.
T Consensus 44 ~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~ 95 (214)
T PRK11111 44 KTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMIS 95 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3666666666677777788888877755 4667888889999999999974
Done!