Query 022146
Match_columns 302
No_of_seqs 372 out of 1315
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w2e_A AQY1, aquaporin, aquapo 9.6 7.1E+02 0.024 22.2 7.1 27 149-175 124-150 (279)
2 3o7q_A L-fucose-proton symport 9.3 9E+02 0.031 21.0 14.6 27 107-133 286-312 (438)
3 2zy9_A Mg2+ transporter MGTE; 7.8 6.2E+02 0.021 24.0 6.2 21 9-29 307-327 (473)
4 3iyz_A Aquaporin-4; water tran 7.4 5.2E+02 0.018 24.1 5.2 27 149-175 126-152 (340)
5 1rh5_C Secbeta; protein transl 6.5 4.5E+02 0.015 17.9 3.2 26 63-88 17-42 (53)
6 1ifl_A Inovirus; helical virus 5.6 5E+02 0.017 17.8 3.0 21 159-179 31-51 (53)
7 1kf6_D Fumarate reductase 13 k 5.6 1.6E+02 0.0056 23.6 0.6 11 102-112 27-37 (119)
8 2b2h_A AMT-1, ammonium transpo 5.3 1.7E+03 0.06 20.8 11.0 17 157-173 304-320 (399)
9 1ifk_A Inovirus; helical virus 5.2 5.5E+02 0.019 17.5 3.0 21 159-179 29-49 (51)
10 4ev6_A Magnesium transport pro 5.1 5E+02 0.017 23.4 3.7 61 115-180 279-339 (339)
No 1
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=9.64 E-value=7.1e+02 Score=22.22 Aligned_cols=27 Identities=7% Similarity=-0.100 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022146 149 VIDYDLALLFQPMLVLGISIGVAFNVI 175 (302)
Q Consensus 149 ~Id~~lal~l~~g~llGa~IGa~l~~~ 175 (302)
.++|..+....+.-++|+.+|+.+...
T Consensus 124 ~~~~~~~~~YiiAQ~lGA~~ga~lv~~ 150 (279)
T 2w2e_A 124 AIPPFRGILMAFTQIVAGMAAAGAASA 150 (279)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999987764
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=9.26 E-value=9e+02 Score=21.02 Aligned_cols=27 Identities=7% Similarity=0.022 Sum_probs=14.7
Q ss_pred HHHHhCCChhhHHhhhHHHHHHHHHHH
Q 022146 107 LNLIIGFDPKSSVALSKCMITGTAVAT 133 (302)
Q Consensus 107 L~l~~glp~k~AvatS~~~i~~~s~s~ 133 (302)
+...+|++..++.-......+...++.
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~ 312 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGR 312 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHH
Confidence 444458888776655544444433333
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=7.81 E-value=6.2e+02 Score=24.02 Aligned_cols=21 Identities=10% Similarity=0.109 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 022146 9 YQWRFSAAAFIGLLLVASVSV 29 (302)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (302)
++..|.+...++.++..+++.
T Consensus 307 ~R~~wl~~~~~~~~l~~~vi~ 327 (473)
T 2zy9_A 307 ARVRWLVILILTGMVTSSILQ 327 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 445555554444444444433
No 4
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=7.36 E-value=5.2e+02 Score=24.11 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=23.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022146 149 VIDYDLALLFQPMLVLGISIGVAFNVI 175 (302)
Q Consensus 149 ~Id~~lal~l~~g~llGa~IGa~l~~~ 175 (302)
.++|..++...++-++|+.+|+.+...
T Consensus 126 ~~~~~~~~~YiiAQ~lGA~~GA~lv~~ 152 (340)
T 3iyz_A 126 KISIAKSVFYITAQCLGAIIGAGILYL 152 (340)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999987653
No 5
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=6.51 E-value=4.5e+02 Score=17.90 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=15.6
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHH
Q 022146 63 SGYKHVWPDIKFGWKIVVSSIIGFFG 88 (302)
Q Consensus 63 ~~y~~~~~~~~~~~~~ll~~liGfla 88 (302)
++|++.-+..+++...++.+.++|.+
T Consensus 17 ryy~ee~~giKi~P~~Vl~~si~~i~ 42 (53)
T 1rh5_C 17 RYMDETFSKIRVKPEHVIGVTVAFVI 42 (53)
T ss_dssp ----CCCCSCCCCHHHHHHHHHHHHH
T ss_pred hhhhccCCccccCCeehhhhHHHHHH
Confidence 45777778888888877765555544
No 6
>1ifl_A Inovirus; helical virus; 5.00A {Enterobacteria phage ike} SCOP: h.1.4.1
Probab=5.63 E-value=5e+02 Score=17.80 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhchHH
Q 022146 159 QPMLVLGISIGVAFNVIFADW 179 (302)
Q Consensus 159 ~~g~llGa~IGa~l~~~lp~~ 179 (302)
....+.|+.+|-++.+++.++
T Consensus 31 vvv~vv~a~~gIklFKKf~sK 51 (53)
T 1ifl_A 31 VVTTVVVAGLVIRLFKKFSSK 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeeechhhhhhhhhcccc
Confidence 345678888998888887765
No 7
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=5.58 E-value=1.6e+02 Score=23.59 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=6.4
Q ss_pred HHHHHHHHHhC
Q 022146 102 IFVPMLNLIIG 112 (302)
Q Consensus 102 I~VPiL~l~~g 112 (302)
++.|++.+++|
T Consensus 27 l~~PvliLl~G 37 (119)
T 1kf6_D 27 IIAPVMILLVG 37 (119)
T ss_dssp HTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44577666544
No 8
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=5.33 E-value=1.7e+03 Score=20.81 Aligned_cols=17 Identities=6% Similarity=-0.201 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022146 157 LFQPMLVLGISIGVAFN 173 (302)
Q Consensus 157 ~l~~g~llGa~IGa~l~ 173 (302)
.=..+++.|+.....+.
T Consensus 304 vHgv~Gi~G~l~~glfa 320 (399)
T 2b2h_A 304 IHGIGGLWGSVAVGILA 320 (399)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHc
Confidence 34456666666555443
No 9
>1ifk_A Inovirus; helical virus; 5.00A {Enterobacteria phage IF1} SCOP: h.1.4.1 PDB: 1nh4_A 2c0w_A 2c0x_A
Probab=5.24 E-value=5.5e+02 Score=17.46 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhchHH
Q 022146 159 QPMLVLGISIGVAFNVIFADW 179 (302)
Q Consensus 159 ~~g~llGa~IGa~l~~~lp~~ 179 (302)
....+.|+.+|-++.+++.++
T Consensus 29 vvv~vv~a~~gIKlFKKf~sK 49 (51)
T 1ifk_A 29 LVVLVVGATVGIKLFKKFVSR 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeeehhhhhHHHhhhccc
Confidence 345678888888888887665
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=5.15 E-value=5e+02 Score=23.37 Aligned_cols=61 Identities=8% Similarity=0.090 Sum_probs=0.0
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 022146 115 PKSSVALSKCMITGTAVATVVYNLRQRHPTLDMPVIDYDLALLFQPMLVLGISIGVAFNVIFADWM 180 (302)
Q Consensus 115 ~k~AvatS~~~i~~~s~s~~~~~~~~~~p~~~~p~Id~~lal~l~~g~llGa~IGa~l~~~lp~~~ 180 (302)
+|.-+..|.+....+.++|++ |--...+|..+|+.+.++..+.++...++..+.-+-..|+
T Consensus 279 mk~LTiit~IflP~T~IaGiy-----GMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 279 MKILTMVTTIFAVPMWITGIY-----GMNFSYLPLANNPQGFWLVMALMVVIIMIFVYIFRRSGWI 339 (339)
T ss_dssp HHHHHHHHHHSSHHHHHHHHT-----TCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhc-----cCcCCCCCCccCchHHHHHHHHHHHHHHHHHHHHHHcCCC
Done!