Query 022146
Match_columns 302
No_of_seqs 372 out of 1315
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 14:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022146.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022146hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 19.6 2.1E+02 0.015 22.9 14.6 13 5-17 16-28 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 13.5 3E+02 0.022 21.8 11.5 25 110-134 279-303 (447)
3 d2yvxa3 f.57.1.1 (A:276-448) M 8.4 3.6E+02 0.026 20.5 6.4 20 10-29 10-29 (173)
4 d1ymga1 f.19.1.1 (A:6-239) Aqu 8.0 2.4E+02 0.018 22.1 5.3 26 150-175 76-101 (234)
5 d1rkla_ f.23.30.1 (A:) Oligosa 5.7 2.3E+02 0.016 16.2 2.7 15 14-28 9-23 (36)
6 d1kf6d_ f.21.2.2 (D:) Fumarate 5.7 75 0.0055 23.6 0.6 12 101-112 26-37 (119)
7 d2h8pc1 f.14.1.1 (C:22-78) Pot 5.5 1.8E+02 0.013 18.4 2.4 16 258-273 2-17 (57)
8 d1l7va_ f.22.1.1 (A:) ABC tran 4.8 7.9E+02 0.058 20.0 10.2 37 77-113 59-109 (324)
9 d1pv7a_ f.38.1.2 (A:) Lactose 4.0 7.3E+02 0.054 18.4 12.7 35 160-194 360-394 (417)
10 d1rc2a_ f.19.1.1 (A:) Aquapori 3.6 4.1E+02 0.03 20.3 3.9 27 150-176 76-102 (231)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=19.58 E-value=2.1e+02 Score=22.89 Aligned_cols=13 Identities=8% Similarity=0.199 Sum_probs=8.1
Q ss_pred CccchhhHHHHHH
Q 022146 5 GSEWYQWRFSAAA 17 (302)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (302)
.+.||+|+|...+
T Consensus 16 ~~~~~~~~w~i~~ 28 (447)
T d1pw4a_ 16 DPTYRRLRWQIFL 28 (447)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHH
Confidence 3567777766543
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=13.45 E-value=3e+02 Score=21.85 Aligned_cols=25 Identities=12% Similarity=-0.116 Sum_probs=12.9
Q ss_pred HhCCChhhHHhhhHHHHHHHHHHHH
Q 022146 110 IIGFDPKSSVALSKCMITGTAVATV 134 (302)
Q Consensus 110 ~~glp~k~AvatS~~~i~~~s~s~~ 134 (302)
..+++..++............+...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (447)
T d1pw4a_ 279 VKHFALDKSSWAYFLYEYAGIPGTL 303 (447)
T ss_dssp BSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhcchhhhhhhhh
Confidence 3567766665555444444433333
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=8.41 E-value=3.6e+02 Score=20.48 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 022146 10 QWRFSAAAFIGLLLVASVSV 29 (302)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (302)
|..|.....++..+.+.++.
T Consensus 10 RlpWL~i~l~~~~~~a~ii~ 29 (173)
T d2yvxa3 10 RVRWLVILILTGMVTSSILQ 29 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777665543
No 4
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.95 E-value=2.4e+02 Score=22.13 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022146 150 IDYDLALLFQPMLVLGISIGVAFNVI 175 (302)
Q Consensus 150 Id~~lal~l~~g~llGa~IGa~l~~~ 175 (302)
++|+..+...+.-++|+.+|+.+...
T Consensus 76 i~~~~~~~Yi~aQ~lGa~~ga~l~~~ 101 (234)
T d1ymga1 76 MSLLRAICYMVAQLLGAVAGAAVLYS 101 (234)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhheeeeeehHHHHHHHHHHHHHH
Confidence 88999999999999999999877653
No 5
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.68 E-value=2.3e+02 Score=16.24 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH
Q 022146 14 SAAAFIGLLLVASVS 28 (302)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (302)
..++.||++++.-++
T Consensus 9 ~~~i~fgi~mmtliv 23 (36)
T d1rkla_ 9 SLAITFGIVMMTLIV 23 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cEEeehhHHHHHHHH
Confidence 467799999876443
No 6
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=5.67 E-value=75 Score=23.63 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhC
Q 022146 101 GIFVPMLNLIIG 112 (302)
Q Consensus 101 ~I~VPiL~l~~g 112 (302)
.++.|++.++.|
T Consensus 26 A~~~Pvlill~g 37 (119)
T d1kf6d_ 26 AIIAPVMILLVG 37 (119)
T ss_dssp HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455677776544
No 7
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.45 E-value=1.8e+02 Score=18.43 Aligned_cols=16 Identities=25% Similarity=0.601 Sum_probs=11.2
Q ss_pred ccchhHHHHHHHHHHH
Q 022146 258 NIYWKELGLLVAVWVI 273 (302)
Q Consensus 258 ~~~w~~l~~l~~vw~~ 273 (302)
-++||+++.++++-+.
T Consensus 2 a~~~R~~~~~~~~~~i 17 (57)
T d2h8pc1 2 ALHWRAAGAATVLLVI 17 (57)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3689999887665533
No 8
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=4.78 E-value=7.9e+02 Score=19.97 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHH--------------hhcccchHHHHHHHHHHHhCC
Q 022146 77 KIVVSSIIGFFGAACG--------------SVGGVGGGGIFVPMLNLIIGF 113 (302)
Q Consensus 77 ~~ll~~liGflaG~is--------------gl~GIGGG~I~VPiL~l~~gl 113 (302)
|.+.++++|..-|.-+ ++.|+.+|..+--++..+++.
T Consensus 59 R~l~a~l~Ga~La~sG~~lQ~~~rNpLA~P~ilGissGA~l~~v~~~~~~~ 109 (324)
T d1l7va_ 59 RTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQ 109 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTCCTTTTTHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCchHHHhhhHHHHHHHHHHHhcc
Confidence 3445566666555433 457887776555555444443
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.96 E-value=7.3e+02 Score=18.40 Aligned_cols=35 Identities=6% Similarity=-0.001 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 022146 160 PMLVLGISIGVAFNVIFADWMITVLLIILFIGMSA 194 (302)
Q Consensus 160 ~g~llGa~IGa~l~~~lp~~~L~~lf~ilLl~~~i 194 (302)
++..+|..++..+...+.....-.+++++.+..++
T Consensus 360 ~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 394 (417)
T d1pv7a_ 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTL 394 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444444444444443
No 10
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=3.64 E-value=4.1e+02 Score=20.34 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022146 150 IDYDLALLFQPMLVLGISIGVAFNVIF 176 (302)
Q Consensus 150 Id~~lal~l~~g~llGa~IGa~l~~~l 176 (302)
++|+.++...+.-++|+.+|+.+...+
T Consensus 76 ~~~~~~~~Yi~aQ~lGa~~g~~l~~~i 102 (231)
T d1rc2a_ 76 FPAKEVVGYVIAQVVGGIVAAALLYLI 102 (231)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999998776543
Done!