BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022147
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex
With Adp And Mg
pdb|2QVL|A Chain A, Crystal Structure Of Diacylglycerol Kinase
Length = 337
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169
KR I NP GK+ K L D LE A + + T + A + YD
Sbjct: 25 KRARIIYNPTSGKE-QFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAXHENYDV 83
Query: 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAI 229
++ GDG L EVVNG+ E+ + + LGV+P GT N ++L P A+
Sbjct: 84 LIAAGGDGTLNEVVNGIAEKPN-----RPKLGVIPXGTVNDFGRALHI----PNDIXGAL 134
Query: 230 LAVIRGHKRLLDVATILQGKTRFHSVLMLAWG 261
+I GH +D+ GK + LA G
Sbjct: 135 DVIIEGHSTKVDI-----GKXNNRYFINLAAG 161
>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
Length = 304
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPL---LEDANIQFTVQETTQQLHAKEIVKVLDLSK 166
+++ + VNP G+ V PL D +I T ++ + +E SK
Sbjct: 9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-----SK 63
Query: 167 YDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKAS 226
D I+ GDG + E NGL E I+ L ++P GT N ++L G P +
Sbjct: 64 VDLIIVFGGDGTVFECTNGLAPLE-----IRPTLAIIPGGTCNDFSRTL----GVPQNIA 114
Query: 227 NAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI--DIESEKYRWMGSARIDFY 284
A + + H + +DVA G+ H + GLV+++ +I++E+ +G +I +Y
Sbjct: 115 EAAKLITKEHVKPVDVAK-ANGQ---HFLNFWGIGLVSEVSNNIDAEEKAKLG--KIGYY 168
Query: 285 VCSYSSLVFTYMHAQT 300
+ S + T +A+T
Sbjct: 169 L----STIRTVKNAET 180
>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
Length = 306
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPL---LEDANIQFTVQETTQQLHAKEIVKVLDLSK 166
+++ + VNP G+ V PL D +I T ++ + +E SK
Sbjct: 13 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-----SK 67
Query: 167 YDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKAS 226
D I+ GDG + E NGL E I+ L ++P GT N ++L G P +
Sbjct: 68 VDLIIVFGGDGTVFECTNGLAPLE-----IRPTLAIIPGGTCNDFSRTL----GVPQNIA 118
Query: 227 NAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI--DIESEKYRWMGSARIDFY 284
A + + H + +DVA G+ H + GLV+++ +I++E+ +G +I +Y
Sbjct: 119 EAAKLITKEHVKPVDVAK-ANGQ---HFLNFWGIGLVSEVSNNIDAEEKAKLG--KIGYY 172
Query: 285 VCSYSSLVFTYMHAQT 300
+ S + T +A+T
Sbjct: 173 L----STIRTVKNAET 184
>pdb|2P1R|A Chain A, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|B Chain B, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|C Chain C, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|D Chain D, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases
Length = 299
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 123 KIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182
K A L + LL D IQ V+ T ++ A+ V + ++ GDG + EV
Sbjct: 14 KSADNQPLREAITLLRDEGIQIHVRVTWEKGDAQRYVDEARRLGVETVIAGGGDGTINEV 73
Query: 183 VNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDV 242
L++ D + LG++P GT N S G P A+ I G+ +D
Sbjct: 74 STALIQ---IRDGVAPALGLLPLGTANDFATS----AGIPEALDKALKLAIAGNAXEIDX 126
Query: 243 ATI 245
A +
Sbjct: 127 AXV 129
>pdb|2HII|C Chain C, Heterotrimeric Pcna Sliding Clamp
pdb|2HII|Z Chain Z, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|C Chain C, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|N Chain N, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|Z Chain Z, Heterotrimeric Pcna Sliding Clamp
Length = 252
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 50 VVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKR-------LWCEKLRDF 102
VVEG + RI +G E+ + +D F S++S L KL D+
Sbjct: 154 VVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDY 213
Query: 103 ID-SFGRPKRLYIFVNPFGGKKIA 125
+ SFG K L +F N GG K+
Sbjct: 214 VKISFGNQKPLQLFFNXEGGGKVT 237
>pdb|2IJX|A Chain A, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2IJX|B Chain B, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2IJX|C Chain C, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2IJX|D Chain D, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2NTI|F Chain F, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2NTI|C Chain C, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2NTI|I Chain I, Crystal Structure Of Pcna123 Heterotrimer
Length = 244
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 50 VVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKR-------LWCEKLRDF 102
VVEG + RI +G E+ + +D F S++S L KL D+
Sbjct: 154 VVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDY 213
Query: 103 ID-SFGRPKRLYIFVNPFGGKKIA 125
+ SFG K L +F N GG K+
Sbjct: 214 VKISFGNQKPLQLFFNMEGGGKVT 237
>pdb|2IX2|C Chain C, Crystal Structure Of The Heterotrimeric Pcna From
Sulfolobus Solfataricus
Length = 259
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 50 VVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKR-------LWCEKLRDF 102
VVEG + RI +G E+ + +D F S++S L KL D+
Sbjct: 169 VVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDY 228
Query: 103 ID-SFGRPKRLYIFVNPFGGKKIA 125
+ SFG K L +F N GG K+
Sbjct: 229 VKISFGNQKPLQLFFNMEGGGKVT 252
>pdb|3PF2|A Chain A, The Crystal Structure Of The Major Pilin Gbs80 Of
Streptococcus Agalactiae 35kda C-Terminal Fragment
pdb|3PG2|A Chain A, The Crystal Structure Of The Major Pilin Gbs80 Of
Streptococcus Agalactiae 35 Kda C-Terminal Fragment
pdb|3PG2|B Chain B, The Crystal Structure Of The Major Pilin Gbs80 Of
Streptococcus Agalactiae 35 Kda C-Terminal Fragment
Length = 319
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 24 LTGDGR-LRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEI 68
L DG ++WTD ++ T + + G V G I++++ DG EI
Sbjct: 205 LASDGTAVKWTDALIKANTNKNYIAGEAVTGQPIKLKSHTDGTFEI 250
>pdb|4FBH|A Chain A, Structure Of Rip From Barley Seeds
Length = 281
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 201 GVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTR 251
G++P T G + DL+G+ K +N L G ++L D T L G+T+
Sbjct: 104 GLIPGATYVGFGGTYRDLLGDTDKLTNVAL----GRQQLADAVTALHGRTK 150
>pdb|4FB9|A Chain A, Structure Of Mutant Rip From Barley Seeds
pdb|4FB9|B Chain B, Structure Of Mutant Rip From Barley Seeds
pdb|4FB9|C Chain C, Structure Of Mutant Rip From Barley Seeds
pdb|4FB9|D Chain D, Structure Of Mutant Rip From Barley Seeds
Length = 282
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 201 GVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTR 251
G++P T G + DL+G+ K +N L G ++L D T L G+T+
Sbjct: 105 GLIPGATYVGFGGTYRDLLGDTDKLTNVAL----GRQQLADAVTALHGRTK 151
>pdb|4FBA|A Chain A, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine
pdb|4FBA|B Chain B, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine
pdb|4FBA|C Chain C, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine
pdb|4FBA|D Chain D, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine
pdb|4FBB|A Chain A, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine (amp-incubated)
pdb|4FBB|B Chain B, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine (amp-incubated)
pdb|4FBB|C Chain C, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine (amp-incubated)
pdb|4FBB|D Chain D, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine (amp-incubated)
pdb|4FBC|A Chain A, Structure Of Mutant Rip From Barley Seeds In Complex With
Amp
pdb|4FBC|B Chain B, Structure Of Mutant Rip From Barley Seeds In Complex With
Amp
pdb|4FBC|C Chain C, Structure Of Mutant Rip From Barley Seeds In Complex With
Amp
pdb|4FBC|D Chain D, Structure Of Mutant Rip From Barley Seeds In Complex With
Amp
Length = 282
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 201 GVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTR 251
G++P T G + DL+G+ K +N L G ++L D T L G+T+
Sbjct: 105 GLIPGATYVGFGGTYRDLLGDTDKLTNVAL----GRQQLADAVTALHGRTK 151
>pdb|3P9Z|A Chain A, Crystal Structure Of Uroporphyrinogen-Iii Synthetase From
Helicobacter Pylori 26695
Length = 229
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 119 FGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163
F G+K K F+ ++ PLLE ++ + L AKEIV LD
Sbjct: 90 FXGEKAHGKEFVQEIFPLLEKKSVLY--------LRAKEIVSSLD 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,047,703
Number of Sequences: 62578
Number of extensions: 394545
Number of successful extensions: 861
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 14
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)