Query 022147
Match_columns 302
No_of_seqs 285 out of 1435
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02958 diacylglycerol kinase 100.0 2.6E-65 5.6E-70 504.2 34.2 296 1-296 3-298 (481)
2 KOG1116 Sphingosine kinase, in 100.0 4.6E-48 1E-52 376.7 16.9 193 103-296 173-366 (579)
3 PLN02204 diacylglycerol kinase 100.0 4.9E-46 1.1E-50 368.5 31.2 280 7-295 19-419 (601)
4 KOG1115 Ceramide kinase [Lipid 100.0 2.2E-39 4.7E-44 302.5 11.5 218 74-296 122-356 (516)
5 PRK11914 diacylglycerol kinase 100.0 6E-36 1.3E-40 280.1 20.0 179 108-302 7-189 (306)
6 PRK00861 putative lipid kinase 100.0 4.7E-35 1E-39 273.3 19.1 174 109-302 2-177 (300)
7 PRK13337 putative lipid kinase 100.0 1.3E-34 2.9E-39 270.9 19.4 176 109-301 1-178 (304)
8 PRK13055 putative lipid kinase 100.0 1.2E-34 2.6E-39 274.8 18.7 178 109-302 2-183 (334)
9 PRK13059 putative lipid kinase 100.0 4.8E-34 1E-38 266.3 19.2 175 109-301 1-177 (295)
10 COG1597 LCB5 Sphingosine kinas 100.0 3.3E-34 7.2E-39 268.0 17.8 178 108-302 1-181 (301)
11 TIGR03702 lip_kinase_YegS lipi 100.0 1.5E-33 3.2E-38 262.6 18.6 174 111-301 1-176 (293)
12 PRK13054 lipid kinase; Reviewe 100.0 3.9E-33 8.4E-38 260.6 19.2 177 109-302 3-181 (300)
13 PRK13057 putative lipid kinase 100.0 4.8E-33 1E-37 258.4 17.7 168 113-302 1-170 (287)
14 TIGR00147 lipid kinase, YegS/R 100.0 8E-32 1.7E-36 250.5 19.9 176 109-301 1-179 (293)
15 PRK12361 hypothetical protein; 100.0 5.6E-31 1.2E-35 264.6 18.8 175 108-301 241-420 (547)
16 PF00781 DAGK_cat: Diacylglyce 100.0 2.4E-27 5.3E-32 195.4 14.6 126 111-246 1-128 (130)
17 KOG4435 Predicted lipid kinase 99.9 1.4E-22 3.1E-27 189.8 12.8 180 105-289 56-242 (535)
18 smart00046 DAGKc Diacylglycero 99.9 2.3E-22 5.1E-27 164.8 10.3 104 113-229 1-106 (124)
19 KOG1169 Diacylglycerol kinase 99.8 1.1E-18 2.3E-23 173.4 12.6 177 109-290 271-479 (634)
20 KOG0782 Predicted diacylglycer 99.6 2.2E-15 4.7E-20 146.6 10.8 154 107-270 363-535 (1004)
21 PRK03708 ppnK inorganic polyph 99.2 1.1E-10 2.4E-15 108.2 11.6 111 110-237 1-114 (277)
22 PRK02645 ppnK inorganic polyph 99.0 1.2E-09 2.6E-14 102.7 10.7 116 108-238 2-118 (305)
23 COG3199 Predicted inorganic po 98.8 2.4E-08 5.1E-13 93.6 10.2 73 150-235 84-157 (355)
24 PRK01231 ppnK inorganic polyph 98.7 1.6E-07 3.4E-12 88.0 10.7 112 109-236 4-119 (295)
25 PRK03378 ppnK inorganic polyph 98.5 2.1E-07 4.6E-12 87.0 7.8 112 108-237 4-121 (292)
26 PF01513 NAD_kinase: ATP-NAD k 98.4 2.9E-07 6.2E-12 85.8 4.1 111 111-238 1-135 (285)
27 PRK03372 ppnK inorganic polyph 98.3 3.6E-06 7.7E-11 79.2 9.2 114 107-237 3-130 (306)
28 PRK02155 ppnK NAD(+)/NADH kina 98.3 6.9E-06 1.5E-10 76.9 10.7 112 109-237 5-121 (291)
29 KOG1170 Diacylglycerol kinase 98.2 5.4E-07 1.2E-11 91.7 2.9 129 109-246 194-324 (1099)
30 PRK14077 pnk inorganic polypho 98.2 1.1E-05 2.3E-10 75.4 10.5 110 108-236 9-121 (287)
31 PRK02649 ppnK inorganic polyph 98.2 8.5E-06 1.8E-10 76.7 9.1 112 109-237 1-126 (305)
32 PRK14076 pnk inorganic polypho 98.2 1.8E-05 3.9E-10 80.6 11.9 131 88-237 271-406 (569)
33 PRK01911 ppnK inorganic polyph 98.1 1.6E-05 3.4E-10 74.5 10.5 111 110-237 1-122 (292)
34 PRK04539 ppnK inorganic polyph 98.1 2.5E-05 5.4E-10 73.3 10.9 113 108-237 4-126 (296)
35 PLN02935 Bifunctional NADH kin 98.0 1.9E-05 4.1E-10 78.2 9.3 116 105-237 190-320 (508)
36 PRK03501 ppnK inorganic polyph 98.0 4.4E-05 9.6E-10 70.4 10.4 97 109-237 2-99 (264)
37 PRK04885 ppnK inorganic polyph 98.0 4E-05 8.6E-10 70.8 10.1 95 110-237 1-95 (265)
38 PLN02727 NAD kinase 97.9 7.3E-05 1.6E-09 78.4 10.8 113 105-237 674-801 (986)
39 PRK00561 ppnK inorganic polyph 97.7 0.00048 1E-08 63.4 12.0 100 110-246 1-101 (259)
40 PRK01185 ppnK inorganic polyph 97.7 0.00011 2.4E-09 68.1 7.3 106 110-237 1-107 (271)
41 PRK14075 pnk inorganic polypho 97.6 0.0011 2.4E-08 60.9 12.4 97 110-238 1-97 (256)
42 PLN02929 NADH kinase 97.5 0.0007 1.5E-08 63.6 9.3 92 131-238 37-140 (301)
43 PRK02231 ppnK inorganic polyph 97.1 0.0016 3.4E-08 60.4 7.1 92 131-236 3-100 (272)
44 PRK04761 ppnK inorganic polyph 96.7 0.012 2.7E-07 53.8 9.6 62 165-238 24-85 (246)
45 COG0061 nadF NAD kinase [Coenz 96.5 0.018 3.9E-07 53.6 9.7 111 111-238 2-114 (281)
46 cd08186 Fe-ADH8 Iron-containin 96.2 0.049 1.1E-06 52.8 11.3 101 109-213 26-145 (383)
47 PF13685 Fe-ADH_2: Iron-contai 96.2 0.024 5.3E-07 51.9 8.5 101 99-212 10-115 (250)
48 cd08181 PPD-like 1,3-propanedi 96.1 0.058 1.3E-06 51.8 11.2 100 110-213 26-142 (357)
49 cd08194 Fe-ADH6 Iron-containin 96.1 0.063 1.4E-06 51.9 11.5 92 109-205 23-130 (375)
50 cd08176 LPO Lactadehyde:propan 96.0 0.066 1.4E-06 51.8 11.2 97 110-211 29-143 (377)
51 PF11711 Tim54: Inner membrane 96.0 0.03 6.4E-07 54.3 8.1 66 91-156 45-116 (382)
52 cd08197 DOIS 2-deoxy-scyllo-in 95.8 0.15 3.4E-06 49.0 12.4 91 110-210 24-125 (355)
53 cd08549 G1PDH_related Glycerol 95.8 0.12 2.7E-06 49.1 11.5 85 109-206 24-113 (332)
54 KOG4180 Predicted kinase [Gene 95.7 0.0098 2.1E-07 55.9 3.8 96 127-240 74-171 (395)
55 cd08187 BDH Butanol dehydrogen 95.7 0.091 2E-06 50.9 10.7 95 110-208 29-141 (382)
56 PRK10624 L-1,2-propanediol oxi 95.7 0.12 2.6E-06 50.1 11.5 97 110-211 31-147 (382)
57 cd08195 DHQS Dehydroquinate sy 95.6 0.13 2.8E-06 49.2 11.2 89 107-205 22-119 (345)
58 cd08171 GlyDH-like2 Glycerol d 95.6 0.073 1.6E-06 50.9 9.3 84 110-205 23-110 (345)
59 cd08185 Fe-ADH1 Iron-containin 95.6 0.16 3.5E-06 49.1 11.6 97 110-210 26-145 (380)
60 PRK00843 egsA NAD(P)-dependent 95.5 0.2 4.4E-06 48.0 11.9 87 109-208 34-122 (350)
61 cd08550 GlyDH-like Glycerol_de 95.4 0.1 2.2E-06 50.0 9.6 84 110-205 23-109 (349)
62 TIGR02638 lactal_redase lactal 95.3 0.22 4.8E-06 48.2 11.7 95 110-209 30-144 (379)
63 PRK09860 putative alcohol dehy 95.3 0.19 4.2E-06 48.7 11.3 99 110-213 32-148 (383)
64 cd08173 Gro1PDH Sn-glycerol-1- 95.3 0.17 3.7E-06 48.2 10.6 86 110-208 26-113 (339)
65 PRK00002 aroB 3-dehydroquinate 95.3 0.27 5.8E-06 47.2 12.0 87 109-205 31-126 (358)
66 cd08188 Fe-ADH4 Iron-containin 95.2 0.28 6E-06 47.5 11.9 95 110-209 29-141 (377)
67 cd08191 HHD 6-hydroxyhexanoate 95.0 0.23 5.1E-06 48.2 10.8 97 110-211 23-137 (386)
68 cd08179 NADPH_BDH NADPH-depend 95.0 0.15 3.3E-06 49.2 9.4 99 110-212 24-143 (375)
69 cd08199 EEVS 2-epi-5-epi-valio 95.0 0.27 5.9E-06 47.3 11.0 88 108-205 25-122 (354)
70 PRK09423 gldA glycerol dehydro 94.9 0.2 4.3E-06 48.3 10.0 84 110-205 30-116 (366)
71 cd08172 GlyDH-like1 Glycerol d 94.7 0.19 4.2E-06 47.9 9.3 84 110-205 24-108 (347)
72 cd08170 GlyDH Glycerol dehydro 94.7 0.23 4.9E-06 47.5 9.8 84 110-205 23-109 (351)
73 PRK10586 putative oxidoreducta 94.7 0.46 1E-05 45.8 11.8 99 99-211 25-124 (362)
74 cd08174 G1PDH-like Glycerol-1- 94.6 0.36 7.9E-06 45.7 10.9 84 110-209 26-111 (331)
75 KOG2178 Predicted sugar kinase 94.6 0.057 1.2E-06 52.1 5.3 58 165-236 167-225 (409)
76 PRK15454 ethanol dehydrogenase 94.6 0.36 7.8E-06 47.1 11.0 100 109-213 49-166 (395)
77 cd08178 AAD_C C-terminal alcoh 94.6 0.19 4.2E-06 48.9 9.1 73 109-186 21-97 (398)
78 cd08551 Fe-ADH iron-containing 94.4 0.4 8.6E-06 46.1 10.7 93 110-207 24-132 (370)
79 TIGR01357 aroB 3-dehydroquinat 94.3 0.4 8.8E-06 45.7 10.6 87 109-205 20-115 (344)
80 cd08169 DHQ-like Dehydroquinat 94.3 0.45 9.9E-06 45.5 10.7 92 109-210 23-124 (344)
81 cd08183 Fe-ADH2 Iron-containin 94.3 0.51 1.1E-05 45.5 11.2 94 110-211 23-137 (374)
82 cd08193 HVD 5-hydroxyvalerate 94.1 0.57 1.2E-05 45.2 11.3 95 110-209 27-137 (376)
83 cd08192 Fe-ADH7 Iron-containin 94.1 0.58 1.3E-05 45.1 11.3 94 110-208 25-138 (370)
84 COG1454 EutG Alcohol dehydroge 94.1 0.95 2.1E-05 44.0 12.5 122 81-215 9-148 (377)
85 cd07766 DHQ_Fe-ADH Dehydroquin 94.0 0.69 1.5E-05 43.7 11.3 90 109-209 23-116 (332)
86 cd08184 Fe-ADH3 Iron-containin 94.0 0.83 1.8E-05 43.9 11.8 94 110-212 26-140 (347)
87 cd08175 G1PDH Glycerol-1-phosp 93.8 0.91 2E-05 43.3 11.8 85 110-207 24-114 (348)
88 cd08182 HEPD Hydroxyethylphosp 93.6 1.2 2.6E-05 42.8 12.2 90 110-207 24-133 (367)
89 cd08180 PDD 1,3-propanediol de 93.5 0.54 1.2E-05 44.6 9.6 93 109-209 22-123 (332)
90 cd08190 HOT Hydroxyacid-oxoaci 93.4 1.1 2.4E-05 44.0 11.8 71 110-185 24-98 (414)
91 cd08189 Fe-ADH5 Iron-containin 93.1 0.94 2E-05 43.7 10.7 94 110-208 27-139 (374)
92 PF00465 Fe-ADH: Iron-containi 93.1 0.29 6.3E-06 47.0 7.1 94 111-209 23-133 (366)
93 PLN02834 3-dehydroquinate synt 92.7 1.3 2.8E-05 43.9 11.2 88 109-206 100-198 (433)
94 PRK15138 aldehyde reductase; P 91.1 1.9 4.2E-05 41.9 10.3 96 110-211 30-146 (387)
95 PF10254 Pacs-1: PACS-1 cytoso 90.4 2.3 4.9E-05 41.8 9.9 108 97-216 3-127 (414)
96 COG0371 GldA Glycerol dehydrog 90.3 2.2 4.8E-05 41.2 9.7 101 101-214 23-125 (360)
97 cd08177 MAR Maleylacetate redu 90.2 1.2 2.6E-05 42.4 7.8 84 110-205 24-109 (337)
98 PRK14021 bifunctional shikimat 90.0 2.9 6.3E-05 42.6 10.9 85 110-205 210-303 (542)
99 PRK13805 bifunctional acetalde 89.8 2 4.4E-05 46.2 10.0 73 109-186 480-558 (862)
100 PRK06203 aroB 3-dehydroquinate 89.7 2.5 5.4E-05 41.3 9.7 90 109-205 42-145 (389)
101 TIGR03405 Phn_Fe-ADH phosphona 89.5 2.1 4.6E-05 41.1 8.9 97 110-213 24-144 (355)
102 cd08198 DHQS-like2 Dehydroquin 89.3 3.4 7.3E-05 40.1 10.2 91 109-206 30-134 (369)
103 cd06295 PBP1_CelR Ligand bindi 89.0 6.3 0.00014 35.1 11.3 87 109-205 3-95 (275)
104 PF00731 AIRC: AIR carboxylase 88.8 2.9 6.3E-05 35.4 8.3 73 126-208 13-89 (150)
105 PRK06756 flavodoxin; Provision 88.3 3.1 6.6E-05 34.4 8.1 89 109-206 1-92 (148)
106 cd06167 LabA_like LabA_like pr 88.3 10 0.00023 30.9 11.3 75 109-189 39-122 (149)
107 cd01536 PBP1_ABC_sugar_binding 88.0 4.4 9.6E-05 35.5 9.5 85 112-205 2-88 (267)
108 PRK06703 flavodoxin; Provision 87.9 3.4 7.4E-05 34.2 8.2 85 109-207 1-92 (151)
109 PLN02948 phosphoribosylaminoim 86.9 34 0.00074 35.2 16.3 119 76-208 372-499 (577)
110 cd06310 PBP1_ABC_sugar_binding 86.7 5.2 0.00011 35.6 9.3 84 111-203 1-88 (273)
111 TIGR02482 PFKA_ATP 6-phosphofr 85.5 2.6 5.7E-05 39.7 6.8 53 154-213 79-131 (301)
112 cd06312 PBP1_ABC_sugar_binding 85.4 6.9 0.00015 34.9 9.4 66 131-203 20-88 (271)
113 cd01391 Periplasmic_Binding_Pr 85.4 8.5 0.00018 32.9 9.7 69 129-204 18-89 (269)
114 TIGR02483 PFK_mixed phosphofru 85.3 1.7 3.8E-05 41.3 5.6 52 154-213 82-133 (324)
115 PRK11780 isoprenoid biosynthes 84.7 5 0.00011 35.9 8.0 47 161-215 80-145 (217)
116 cd00763 Bacterial_PFK Phosphof 84.6 3.2 6.9E-05 39.4 7.0 93 110-213 31-131 (317)
117 cd06305 PBP1_methylthioribose_ 84.4 8.4 0.00018 34.1 9.5 59 131-189 19-79 (273)
118 cd01537 PBP1_Repressors_Sugar_ 84.3 10 0.00022 32.9 9.8 73 129-208 17-90 (264)
119 PRK03202 6-phosphofructokinase 83.8 3.1 6.6E-05 39.6 6.5 96 110-213 32-132 (320)
120 cd00764 Eukaryotic_PFK Phospho 83.6 3.4 7.4E-05 43.8 7.3 60 153-213 465-524 (762)
121 cd06318 PBP1_ABC_sugar_binding 83.6 9.8 0.00021 34.0 9.6 84 112-204 2-87 (282)
122 cd06282 PBP1_GntR_like_2 Ligan 83.5 12 0.00027 32.8 10.1 58 131-188 19-77 (266)
123 cd06341 PBP1_ABC_ligand_bindin 83.4 20 0.00044 33.2 12.0 98 109-215 132-232 (341)
124 TIGR00288 conserved hypothetic 83.4 22 0.00047 30.5 10.9 104 96-215 43-149 (160)
125 PTZ00286 6-phospho-1-fructokin 83.3 2.8 6E-05 41.9 6.2 95 110-212 120-220 (459)
126 cd06268 PBP1_ABC_transporter_L 83.2 31 0.00068 30.3 13.1 95 87-189 117-213 (298)
127 cd06278 PBP1_LacI_like_2 Ligan 83.2 14 0.0003 32.4 10.3 48 131-178 19-66 (266)
128 PRK05282 (alpha)-aspartyl dipe 83.0 8.5 0.00018 34.9 8.8 74 93-178 18-91 (233)
129 PF04392 ABC_sub_bind: ABC tra 82.9 7.9 0.00017 35.8 8.8 91 90-188 115-205 (294)
130 PRK10653 D-ribose transporter 82.0 17 0.00036 33.1 10.6 87 109-204 26-114 (295)
131 cd01538 PBP1_ABC_xylose_bindin 81.9 12 0.00025 34.0 9.5 70 130-206 18-89 (288)
132 TIGR01162 purE phosphoribosyla 81.2 14 0.0003 31.5 8.8 69 131-208 15-87 (156)
133 PRK07308 flavodoxin; Validated 80.8 11 0.00025 30.9 8.2 84 110-207 2-92 (146)
134 PRK09271 flavodoxin; Provision 80.5 5.3 0.00011 33.7 6.2 87 110-206 1-94 (160)
135 cd06320 PBP1_allose_binding Pe 80.4 11 0.00024 33.5 8.7 85 111-204 1-89 (275)
136 cd06300 PBP1_ABC_sugar_binding 80.0 12 0.00027 33.1 8.9 85 111-204 1-92 (272)
137 PRK04155 chaperone protein Hch 80.0 15 0.00033 34.3 9.6 38 164-208 145-191 (287)
138 PLN02564 6-phosphofructokinase 79.8 4.9 0.00011 40.4 6.5 96 110-213 120-221 (484)
139 PRK11303 DNA-binding transcrip 79.8 21 0.00045 32.8 10.6 87 108-203 60-147 (328)
140 PRK10014 DNA-binding transcrip 79.7 24 0.00051 32.7 11.0 87 108-203 63-150 (342)
141 PRK06830 diphosphate--fructose 79.7 3.1 6.7E-05 41.3 5.1 99 110-213 113-217 (443)
142 PF13458 Peripla_BP_6: Peripla 79.4 28 0.00061 31.9 11.3 78 108-189 134-213 (343)
143 cd06315 PBP1_ABC_sugar_binding 79.3 19 0.00041 32.4 9.9 85 110-203 1-87 (280)
144 PRK14071 6-phosphofructokinase 79.3 5.3 0.00012 38.6 6.5 53 155-214 96-148 (360)
145 cd06319 PBP1_ABC_sugar_binding 79.2 17 0.00036 32.3 9.4 66 131-203 19-86 (277)
146 PF01936 NYN: NYN domain; Int 78.7 11 0.00025 30.3 7.6 59 131-189 50-118 (146)
147 PF00365 PFK: Phosphofructokin 78.6 2.8 6E-05 39.1 4.2 51 156-213 82-132 (282)
148 cd07025 Peptidase_S66 LD-Carbo 78.4 6.8 0.00015 36.4 6.8 64 114-179 2-76 (282)
149 TIGR02417 fruct_sucro_rep D-fr 78.4 28 0.00061 32.0 11.0 87 108-203 59-146 (327)
150 PF03575 Peptidase_S51: Peptid 78.3 3.5 7.6E-05 34.5 4.4 70 130-209 2-81 (154)
151 cd06349 PBP1_ABC_ligand_bindin 77.7 42 0.00092 31.0 12.0 90 96-189 122-213 (340)
152 cd00363 PFK Phosphofructokinas 77.3 7.2 0.00016 37.3 6.7 56 155-212 81-136 (338)
153 cd01540 PBP1_arabinose_binding 77.1 18 0.0004 32.4 9.1 66 131-203 19-85 (289)
154 cd06301 PBP1_rhizopine_binding 76.9 20 0.00044 31.7 9.2 66 131-203 19-87 (272)
155 cd06317 PBP1_ABC_sugar_binding 76.8 28 0.0006 30.8 10.1 68 129-203 18-87 (275)
156 cd01539 PBP1_GGBP Periplasmic 76.7 18 0.0004 33.1 9.1 84 111-203 1-88 (303)
157 PF07015 VirC1: VirC1 protein; 76.7 27 0.00058 31.7 9.8 99 110-215 1-102 (231)
158 PF00532 Peripla_BP_1: Peripla 76.6 22 0.00048 32.6 9.6 87 110-206 2-88 (279)
159 cd06296 PBP1_CatR_like Ligand- 76.5 33 0.00071 30.2 10.5 47 131-177 19-66 (270)
160 cd06299 PBP1_LacI_like_13 Liga 76.5 32 0.00068 30.2 10.4 48 131-178 19-67 (265)
161 cd06304 PBP1_BmpA_like Peripla 76.5 27 0.00059 31.0 10.0 46 131-176 21-66 (260)
162 cd06289 PBP1_MalI_like Ligand- 76.4 24 0.00052 30.9 9.6 56 131-186 19-75 (268)
163 cd08196 DHQS-like1 Dehydroquin 76.4 21 0.00045 34.3 9.6 81 110-205 20-110 (346)
164 PRK06555 pyrophosphate--fructo 76.0 8.3 0.00018 37.9 6.8 57 154-212 100-156 (403)
165 PRK11104 hemG protoporphyrinog 75.7 7.1 0.00015 33.6 5.7 86 110-207 1-88 (177)
166 cd06303 PBP1_LuxPQ_Quorum_Sens 75.7 25 0.00055 31.5 9.7 59 131-189 20-83 (280)
167 cd01545 PBP1_SalR Ligand-bindi 75.5 32 0.0007 30.2 10.2 57 131-187 19-77 (270)
168 cd06267 PBP1_LacI_sugar_bindin 75.0 34 0.00073 29.6 10.0 51 131-181 19-70 (264)
169 cd06306 PBP1_TorT-like TorT-li 74.7 24 0.00053 31.4 9.2 66 131-203 19-87 (268)
170 PRK14072 6-phosphofructokinase 74.5 8.5 0.00019 38.0 6.5 60 153-214 90-149 (416)
171 cd06324 PBP1_ABC_sugar_binding 74.2 31 0.00067 31.6 9.9 68 131-205 20-90 (305)
172 cd06298 PBP1_CcpA_like Ligand- 73.7 40 0.00087 29.6 10.3 55 131-186 19-74 (268)
173 cd06273 PBP1_GntR_like_1 This 73.3 44 0.00095 29.4 10.5 46 131-176 19-65 (268)
174 COG0205 PfkA 6-phosphofructoki 73.1 12 0.00026 36.0 7.0 98 109-213 32-134 (347)
175 cd06323 PBP1_ribose_binding Pe 72.9 26 0.00056 30.7 8.8 66 131-203 19-86 (268)
176 TIGR02478 6PF1K_euk 6-phosphof 72.9 13 0.00028 39.5 7.8 60 153-213 465-524 (745)
177 cd06270 PBP1_GalS_like Ligand 72.5 51 0.0011 29.1 10.7 46 131-176 19-65 (268)
178 cd06316 PBP1_ABC_sugar_binding 72.5 29 0.00063 31.3 9.3 66 131-203 19-87 (294)
179 cd00764 Eukaryotic_PFK Phospho 72.0 6.7 0.00014 41.7 5.4 101 110-214 34-160 (762)
180 PRK10355 xylF D-xylose transpo 72.0 59 0.0013 30.5 11.4 87 108-203 24-112 (330)
181 cd06333 PBP1_ABC-type_HAAT_lik 71.9 79 0.0017 28.8 14.8 86 108-202 132-219 (312)
182 cd06313 PBP1_ABC_sugar_binding 71.8 22 0.00048 31.8 8.2 67 131-204 19-87 (272)
183 TIGR01754 flav_RNR ribonucleot 71.8 21 0.00046 29.1 7.4 87 110-206 1-90 (140)
184 cd07062 Peptidase_S66_mccF_lik 71.8 14 0.00031 34.7 7.2 66 113-179 3-80 (308)
185 cd06297 PBP1_LacI_like_12 Liga 71.4 48 0.001 29.4 10.3 46 131-176 19-65 (269)
186 COG2984 ABC-type uncharacteriz 71.3 46 0.00099 31.7 10.2 102 88-200 141-242 (322)
187 cd06322 PBP1_ABC_sugar_binding 71.1 31 0.00067 30.4 8.9 68 130-204 18-87 (267)
188 PRK05568 flavodoxin; Provision 70.8 18 0.00038 29.3 6.7 69 109-187 1-77 (142)
189 cd03147 GATase1_Ydr533c_like T 70.7 16 0.00034 33.0 6.9 42 164-213 92-142 (231)
190 cd06281 PBP1_LacI_like_5 Ligan 70.6 42 0.0009 29.7 9.7 56 131-186 19-75 (269)
191 PLN02884 6-phosphofructokinase 70.1 14 0.00031 36.4 6.9 99 110-213 85-188 (411)
192 cd04509 PBP1_ABC_transporter_G 70.1 71 0.0015 28.0 11.1 77 109-189 136-214 (299)
193 PRK05637 anthranilate synthase 70.1 28 0.0006 30.9 8.2 89 109-216 1-91 (208)
194 PF13407 Peripla_BP_4: Peripla 70.0 42 0.00091 29.4 9.5 84 115-206 3-89 (257)
195 cd01743 GATase1_Anthranilate_S 69.8 21 0.00046 30.5 7.3 73 131-217 12-90 (184)
196 smart00115 CASc Caspase, inter 69.0 28 0.00061 31.4 8.2 107 107-213 5-133 (241)
197 cd06271 PBP1_AglR_RafR_like Li 69.0 50 0.0011 28.9 9.8 65 131-203 23-88 (268)
198 TIGR02478 6PF1K_euk 6-phosphof 68.9 7.8 0.00017 41.1 5.1 101 110-213 31-156 (745)
199 TIGR02955 TMAO_TorT TMAO reduc 68.6 41 0.00089 30.6 9.4 56 131-186 19-78 (295)
200 PRK15395 methyl-galactoside AB 68.0 52 0.0011 30.7 10.1 90 107-205 22-114 (330)
201 cd06277 PBP1_LacI_like_1 Ligan 67.8 70 0.0015 28.1 10.6 57 131-189 22-79 (268)
202 TIGR00640 acid_CoA_mut_C methy 67.7 40 0.00087 27.6 8.2 71 113-188 5-75 (132)
203 cd06335 PBP1_ABC_ligand_bindin 67.6 90 0.002 29.1 11.7 78 108-189 137-216 (347)
204 PRK05670 anthranilate synthase 67.5 15 0.00033 31.7 5.9 78 129-216 11-90 (189)
205 PRK10703 DNA-binding transcrip 67.3 69 0.0015 29.6 10.8 88 109-205 59-147 (341)
206 COG1646 Predicted phosphate-bi 67.0 21 0.00046 32.5 6.7 77 131-209 5-82 (240)
207 cd03132 GATase1_catalase Type 66.9 18 0.00038 29.4 6.0 91 110-213 2-110 (142)
208 PRK06774 para-aminobenzoate sy 66.6 16 0.00035 31.6 5.9 78 129-216 11-90 (191)
209 COG1609 PurR Transcriptional r 66.2 65 0.0014 30.4 10.4 66 107-174 56-122 (333)
210 PRK07765 para-aminobenzoate sy 66.0 61 0.0013 28.7 9.6 76 131-217 14-95 (214)
211 cd06279 PBP1_LacI_like_3 Ligan 66.0 66 0.0014 28.8 10.1 62 131-203 24-85 (283)
212 CHL00101 trpG anthranilate syn 65.9 29 0.00063 30.0 7.4 77 131-217 13-91 (190)
213 PLN02335 anthranilate synthase 65.6 34 0.00073 30.6 7.9 95 103-216 12-109 (222)
214 TIGR02634 xylF D-xylose ABC tr 65.6 50 0.0011 30.2 9.4 6 199-204 121-126 (302)
215 COG3340 PepE Peptidase E [Amin 65.5 29 0.00062 31.3 7.2 65 110-181 33-98 (224)
216 PRK10423 transcriptional repre 65.5 98 0.0021 28.2 11.4 69 108-178 55-124 (327)
217 cd06292 PBP1_LacI_like_10 Liga 65.4 81 0.0018 27.8 10.5 44 131-174 19-63 (273)
218 PF01220 DHquinase_II: Dehydro 65.4 37 0.00079 28.5 7.4 43 129-172 30-72 (140)
219 cd06329 PBP1_SBP_like_3 Peripl 65.4 92 0.002 28.9 11.2 90 96-189 130-224 (342)
220 PF06506 PrpR_N: Propionate ca 65.3 86 0.0019 26.7 10.6 67 107-185 75-141 (176)
221 PF03358 FMN_red: NADPH-depend 64.7 37 0.0008 27.7 7.5 94 110-206 1-115 (152)
222 TIGR00322 diphth2_R diphthamid 64.4 51 0.0011 31.5 9.3 77 92-174 215-291 (332)
223 cd03169 GATase1_PfpI_1 Type 1 64.2 12 0.00026 31.9 4.6 41 166-214 76-124 (180)
224 cd06321 PBP1_ABC_sugar_binding 63.9 46 0.00099 29.4 8.6 29 160-188 51-80 (271)
225 PRK09267 flavodoxin FldA; Vali 63.7 34 0.00073 28.8 7.2 86 109-206 1-89 (169)
226 cd01575 PBP1_GntR Ligand-bindi 63.7 74 0.0016 27.8 9.8 48 131-178 19-67 (268)
227 cd06308 PBP1_sensor_kinase_lik 63.3 62 0.0013 28.6 9.3 67 131-204 19-88 (270)
228 cd03129 GAT1_Peptidase_E_like 63.2 55 0.0012 28.6 8.8 78 131-212 47-129 (210)
229 cd06283 PBP1_RegR_EndR_KdgR_li 63.0 80 0.0017 27.5 9.9 12 165-176 54-65 (267)
230 cd06309 PBP1_YtfQ_like Peripla 62.9 49 0.0011 29.3 8.6 67 131-204 19-87 (273)
231 cd06354 PBP1_BmpA_PnrA_like Pe 62.9 86 0.0019 27.9 10.2 45 131-175 22-66 (265)
232 TIGR02069 cyanophycinase cyano 62.9 65 0.0014 29.4 9.4 44 131-176 46-92 (250)
233 TIGR01481 ccpA catabolite cont 62.0 1.1E+02 0.0025 27.9 11.1 67 108-176 58-125 (329)
234 cd06302 PBP1_LsrB_Quorum_Sensi 62.0 69 0.0015 29.1 9.6 66 131-203 19-87 (298)
235 PRK05569 flavodoxin; Provision 61.9 32 0.00069 27.8 6.6 68 110-187 2-77 (141)
236 TIGR01007 eps_fam capsular exo 61.7 39 0.00084 29.1 7.5 55 97-153 4-58 (204)
237 cd01251 PH_centaurin_alpha Cen 61.7 11 0.00024 29.4 3.6 26 79-104 76-101 (103)
238 cd01574 PBP1_LacI Ligand-bindi 61.7 94 0.002 27.1 10.1 48 131-178 19-68 (264)
239 cd06293 PBP1_LacI_like_11 Liga 60.7 1.2E+02 0.0025 26.7 10.6 44 131-174 19-63 (269)
240 PRK00286 xseA exodeoxyribonucl 60.6 1.8E+02 0.0038 28.7 14.8 74 109-189 135-223 (438)
241 TIGR01382 PfpI intracellular p 60.2 31 0.00067 28.6 6.4 41 165-213 59-107 (166)
242 cd00886 MogA_MoaB MogA_MoaB fa 59.9 44 0.00094 27.9 7.2 48 131-178 23-73 (152)
243 cd03133 GATase1_ES1 Type 1 glu 59.9 21 0.00045 32.0 5.4 51 161-215 77-142 (213)
244 COG4635 HemG Flavodoxin [Energ 59.8 21 0.00046 30.7 5.1 91 110-214 1-93 (175)
245 PRK13849 putative crown gall t 59.8 1.2E+02 0.0027 27.1 10.6 48 110-159 1-48 (231)
246 cd01541 PBP1_AraR Ligand-bindi 59.4 1E+02 0.0023 27.1 10.1 47 131-177 19-66 (273)
247 cd06342 PBP1_ABC_LIVBP_like Ty 59.2 1.1E+02 0.0024 27.8 10.5 78 108-189 134-213 (334)
248 cd06294 PBP1_ycjW_transcriptio 59.2 1E+02 0.0022 26.9 10.0 15 132-146 25-39 (270)
249 PRK14987 gluconate operon tran 59.2 1E+02 0.0022 28.3 10.3 86 108-203 62-148 (331)
250 cd06311 PBP1_ABC_sugar_binding 58.8 78 0.0017 28.0 9.1 69 131-206 19-94 (274)
251 TIGR00725 conserved hypothetic 58.8 16 0.00034 31.0 4.3 48 153-207 18-65 (159)
252 cd06343 PBP1_ABC_ligand_bindin 58.5 1.5E+02 0.0032 27.7 11.3 78 108-189 143-222 (362)
253 PTZ00287 6-phosphofructokinase 58.4 17 0.00038 40.9 5.5 58 154-213 916-973 (1419)
254 PRK15404 leucine ABC transport 58.4 1.7E+02 0.0036 27.8 11.8 78 108-189 160-239 (369)
255 cd00765 Pyrophosphate_PFK Phos 58.4 30 0.00065 35.4 6.9 103 108-214 103-212 (550)
256 cd06272 PBP1_hexuronate_repres 58.3 1.2E+02 0.0026 26.5 10.2 9 166-174 51-59 (261)
257 PRK09701 D-allose transporter 58.1 98 0.0021 28.4 9.9 87 109-204 24-114 (311)
258 PF05893 LuxC: Acyl-CoA reduct 58.0 25 0.00053 34.5 6.1 30 156-186 159-188 (399)
259 cd06360 PBP1_alkylbenzenes_lik 57.8 1.5E+02 0.0033 27.0 11.4 77 109-189 134-212 (336)
260 cd01744 GATase1_CPSase Small c 57.6 47 0.001 28.3 7.1 71 133-217 12-88 (178)
261 PF09419 PGP_phosphatase: Mito 57.4 1.2E+02 0.0025 26.2 9.4 89 90-186 62-154 (168)
262 PRK11574 oxidative-stress-resi 57.4 47 0.001 28.5 7.2 90 109-207 2-109 (196)
263 COG2185 Sbm Methylmalonyl-CoA 57.3 1.1E+02 0.0025 25.6 9.0 75 108-188 11-85 (143)
264 PF00885 DMRL_synthase: 6,7-di 57.1 52 0.0011 27.5 7.0 94 109-205 3-109 (144)
265 PF00763 THF_DHG_CYH: Tetrahyd 56.6 1E+02 0.0022 24.6 10.0 79 91-172 8-93 (117)
266 COG0337 AroB 3-dehydroquinate 56.5 83 0.0018 30.5 9.2 88 108-205 32-128 (360)
267 TIGR03682 arCOG04112 arCOG0411 56.4 89 0.0019 29.5 9.3 76 92-174 195-270 (308)
268 cd06366 PBP1_GABAb_receptor Li 56.4 1.6E+02 0.0034 27.3 11.1 88 97-189 124-215 (350)
269 TIGR03590 PseG pseudaminic aci 56.2 84 0.0018 28.8 9.0 28 166-205 241-268 (279)
270 PRK06490 glutamine amidotransf 56.0 15 0.00032 33.3 3.9 90 108-217 6-105 (239)
271 TIGR02477 PFKA_PPi diphosphate 55.6 23 0.0005 36.2 5.5 131 79-213 69-206 (539)
272 COG1432 Uncharacterized conser 55.6 30 0.00065 29.9 5.6 52 155-215 99-150 (181)
273 cd00032 CASc Caspase, interleu 55.4 61 0.0013 29.1 7.8 107 107-214 6-135 (243)
274 TIGR00730 conserved hypothetic 55.1 19 0.00041 31.2 4.2 47 153-206 19-66 (178)
275 cd06307 PBP1_uncharacterized_s 55.0 1.1E+02 0.0024 27.0 9.5 65 131-203 19-89 (275)
276 PF13377 Peripla_BP_3: Peripla 54.8 65 0.0014 25.9 7.3 98 108-211 8-109 (160)
277 COG1979 Uncharacterized oxidor 54.8 86 0.0019 30.2 8.7 78 107-192 27-115 (384)
278 PLN03028 pyrophosphate--fructo 54.5 24 0.00052 36.6 5.5 102 109-212 111-217 (610)
279 cd00861 ProRS_anticodon_short 54.4 50 0.0011 24.4 6.1 45 130-176 20-64 (94)
280 cd03128 GAT_1 Type 1 glutamine 54.4 33 0.00072 23.4 4.9 68 132-207 16-89 (92)
281 cd06274 PBP1_FruR Ligand bindi 54.1 1.2E+02 0.0027 26.5 9.6 46 131-176 19-65 (264)
282 PRK11253 ldcA L,D-carboxypepti 53.5 44 0.00096 31.4 6.8 70 113-185 4-85 (305)
283 TIGR00272 DPH2 diphthamide bio 53.4 90 0.0019 31.6 9.3 66 103-174 275-340 (496)
284 cd01235 PH_SETbf Set binding f 53.2 16 0.00034 27.8 3.1 23 80-102 78-100 (101)
285 cd06345 PBP1_ABC_ligand_bindin 53.1 1.9E+02 0.0041 26.7 14.2 79 107-189 142-222 (344)
286 cd06284 PBP1_LacI_like_6 Ligan 52.9 1.5E+02 0.0033 25.7 10.5 48 130-177 18-66 (267)
287 PRK07085 diphosphate--fructose 52.8 29 0.00062 35.7 5.7 105 107-213 100-209 (555)
288 COG1570 XseA Exonuclease VII, 52.7 2.5E+02 0.0054 28.0 14.2 153 11-181 24-208 (440)
289 PRK10116 universal stress prot 52.6 97 0.0021 24.5 8.0 65 134-205 70-139 (142)
290 COG1691 NCAIR mutase (PurE)-re 52.6 1.1E+02 0.0025 27.8 8.7 72 130-210 133-208 (254)
291 COG1433 Uncharacterized conser 52.6 88 0.0019 25.5 7.5 72 109-190 36-108 (121)
292 KOG3857 Alcohol dehydrogenase, 52.6 44 0.00096 32.4 6.5 70 108-185 69-145 (465)
293 cd05564 PTS_IIB_chitobiose_lic 52.5 92 0.002 23.9 7.4 73 121-205 7-79 (96)
294 PRK09426 methylmalonyl-CoA mut 52.0 1.3E+02 0.0028 32.0 10.5 57 131-189 600-656 (714)
295 cd06348 PBP1_ABC_ligand_bindin 52.0 1.3E+02 0.0027 27.9 9.7 79 108-189 135-215 (344)
296 PRK15118 universal stress glob 51.8 75 0.0016 25.4 7.2 67 132-205 69-139 (144)
297 smart00852 MoCF_biosynth Proba 51.6 42 0.0009 27.2 5.6 57 131-188 21-84 (135)
298 PRK13566 anthranilate synthase 51.6 3.3E+02 0.0071 29.0 13.6 87 108-216 525-616 (720)
299 PRK14173 bifunctional 5,10-met 51.1 1.7E+02 0.0037 27.5 10.1 122 90-216 10-147 (287)
300 TIGR01737 FGAM_synth_I phospho 51.1 1E+02 0.0022 27.5 8.5 50 110-176 1-50 (227)
301 TIGR02667 moaB_proteo molybden 50.9 83 0.0018 26.6 7.5 59 131-189 25-91 (163)
302 cd06352 PBP1_NPR_GC_like Ligan 50.4 1.6E+02 0.0035 27.7 10.3 90 95-189 124-217 (389)
303 cd06275 PBP1_PurR Ligand-bindi 50.2 1.7E+02 0.0038 25.5 10.7 16 161-176 50-65 (269)
304 cd05802 GlmM GlmM is a bacteri 50.0 84 0.0018 30.8 8.4 51 91-148 150-200 (434)
305 PRK09273 hypothetical protein; 50.0 47 0.001 29.7 5.9 33 115-148 5-37 (211)
306 PRK09065 glutamine amidotransf 49.3 61 0.0013 29.2 6.8 46 129-180 23-68 (237)
307 cd06386 PBP1_NPR_C_like Ligand 49.1 2E+02 0.0043 27.5 10.7 79 108-188 136-216 (387)
308 cd06325 PBP1_ABC_uncharacteriz 49.1 1.9E+02 0.004 25.5 10.5 78 107-189 129-206 (281)
309 TIGR00237 xseA exodeoxyribonuc 49.0 2.8E+02 0.006 27.5 14.5 158 11-181 18-202 (432)
310 PRK14192 bifunctional 5,10-met 49.0 2E+02 0.0043 26.8 10.3 72 90-164 10-88 (283)
311 PRK09492 treR trehalose repres 48.8 95 0.0021 28.2 8.2 99 108-215 174-273 (315)
312 cd01540 PBP1_arabinose_binding 48.8 1.9E+02 0.0042 25.6 11.3 114 88-206 107-229 (289)
313 PRK14188 bifunctional 5,10-met 48.5 1.7E+02 0.0036 27.6 9.7 98 90-190 9-117 (296)
314 cd03089 PMM_PGM The phosphoman 48.3 1E+02 0.0022 30.4 8.7 47 92-146 146-192 (443)
315 PRK10936 TMAO reductase system 48.1 2.4E+02 0.0051 26.4 11.1 86 108-203 45-134 (343)
316 PRK14324 glmM phosphoglucosami 48.0 97 0.0021 30.6 8.5 50 92-147 156-205 (446)
317 PF00117 GATase: Glutamine ami 47.8 19 0.00041 30.8 3.1 75 131-217 11-91 (192)
318 cd06344 PBP1_ABC_ligand_bindin 47.6 2.3E+02 0.0049 26.1 11.1 91 95-188 120-213 (332)
319 cd06347 PBP1_ABC_ligand_bindin 47.3 2.2E+02 0.0048 25.8 12.1 78 109-189 135-214 (334)
320 cd02042 ParA ParA and ParB of 47.2 1.2E+02 0.0026 22.7 8.1 59 113-187 2-60 (104)
321 PRK09590 celB cellobiose phosp 47.2 98 0.0021 24.4 6.8 82 110-205 2-83 (104)
322 cd06353 PBP1_BmpA_Med_like Per 47.1 84 0.0018 28.4 7.4 39 134-172 24-63 (258)
323 cd03146 GAT1_Peptidase_E Type 47.0 84 0.0018 27.7 7.2 104 98-212 19-129 (212)
324 cd01742 GATase1_GMP_Synthase T 46.9 28 0.00061 29.4 4.0 45 131-181 12-56 (181)
325 TIGR00566 trpG_papA glutamine 46.8 97 0.0021 26.7 7.5 78 129-216 11-90 (188)
326 PRK15408 autoinducer 2-binding 46.8 2.3E+02 0.0051 26.6 10.7 80 108-189 22-104 (336)
327 cd06336 PBP1_ABC_ligand_bindin 46.8 2.4E+02 0.0052 26.2 10.7 78 108-189 137-217 (347)
328 cd06334 PBP1_ABC_ligand_bindin 46.6 2.5E+02 0.0055 26.3 13.9 78 108-189 139-218 (351)
329 PRK12412 pyridoxal kinase; Rev 46.4 47 0.001 30.2 5.7 62 155-216 157-220 (268)
330 PLN02404 6,7-dimethyl-8-ribity 45.9 1.2E+02 0.0025 25.5 7.4 98 108-208 6-116 (141)
331 TIGR00177 molyb_syn molybdenum 45.8 59 0.0013 26.8 5.7 55 131-186 30-91 (144)
332 PRK06895 putative anthranilate 45.6 1.5E+02 0.0032 25.5 8.4 87 110-217 2-91 (190)
333 PRK14315 glmM phosphoglucosami 45.5 1.1E+02 0.0024 30.2 8.5 50 92-147 157-206 (448)
334 TIGR02026 BchE magnesium-proto 45.5 65 0.0014 32.4 6.9 22 167-188 116-137 (497)
335 TIGR01481 ccpA catabolite cont 45.4 1.5E+02 0.0033 27.1 9.0 80 108-189 175-258 (329)
336 PRK08857 para-aminobenzoate sy 45.3 61 0.0013 28.0 6.0 77 130-216 12-90 (193)
337 PRK05948 precorrin-2 methyltra 45.2 2E+02 0.0043 26.1 9.4 46 165-215 91-141 (238)
338 PLN02251 pyrophosphate-depende 45.2 51 0.0011 33.9 6.1 133 79-215 98-237 (568)
339 TIGR01752 flav_long flavodoxin 45.1 93 0.002 26.2 6.9 83 112-206 2-87 (167)
340 PRK14317 glmM phosphoglucosami 44.7 1.2E+02 0.0026 30.1 8.7 51 91-147 168-218 (465)
341 cd06326 PBP1_STKc_like Type I 44.7 2.5E+02 0.0053 25.6 15.0 77 109-189 136-214 (336)
342 cd06290 PBP1_LacI_like_9 Ligan 44.5 1.4E+02 0.0029 26.2 8.3 46 131-176 19-65 (265)
343 PRK14189 bifunctional 5,10-met 44.4 2.7E+02 0.0058 26.1 10.3 99 90-191 10-118 (285)
344 TIGR01455 glmM phosphoglucosam 44.1 1.3E+02 0.0029 29.6 8.8 51 91-147 152-202 (443)
345 PLN02285 methionyl-tRNA formyl 44.1 29 0.00062 33.2 3.9 64 110-174 37-101 (334)
346 cd06338 PBP1_ABC_ligand_bindin 44.0 2.6E+02 0.0056 25.7 13.1 77 109-189 141-219 (345)
347 cd01265 PH_PARIS-1 PARIS-1 ple 43.9 28 0.0006 26.6 3.2 23 80-102 71-93 (95)
348 PF03129 HGTP_anticodon: Antic 43.7 1E+02 0.0022 22.8 6.3 60 114-176 3-62 (94)
349 PRK05395 3-dehydroquinate dehy 43.6 1.7E+02 0.0037 24.7 8.0 42 130-172 32-73 (146)
350 PRK11175 universal stress prot 43.3 1.6E+02 0.0035 26.8 8.8 67 136-208 77-149 (305)
351 cd03087 PGM_like1 This archaea 43.3 1.2E+02 0.0027 29.7 8.4 50 91-147 145-194 (439)
352 cd01220 PH_CDEP Chondrocyte-de 43.0 34 0.00073 26.6 3.5 26 79-104 73-98 (99)
353 TIGR02405 trehalos_R_Ecol treh 42.9 2.6E+02 0.0056 25.4 10.2 67 108-176 58-125 (311)
354 PRK12616 pyridoxal kinase; Rev 42.8 64 0.0014 29.4 6.0 13 205-217 212-224 (270)
355 PF01075 Glyco_transf_9: Glyco 42.7 1.2E+02 0.0025 26.7 7.5 77 110-189 104-184 (247)
356 PRK09542 manB phosphomannomuta 42.6 1.5E+02 0.0033 29.2 9.0 48 91-145 145-192 (445)
357 PRK14176 bifunctional 5,10-met 42.6 2.9E+02 0.0063 25.9 10.3 123 90-216 15-156 (287)
358 PF01965 DJ-1_PfpI: DJ-1/PfpI 42.5 26 0.00055 28.8 3.0 50 161-214 32-87 (147)
359 PRK06455 riboflavin synthase; 42.4 1.6E+02 0.0034 25.2 7.7 75 109-188 1-85 (155)
360 PTZ00468 phosphofructokinase f 42.1 41 0.00089 37.8 5.1 133 79-213 104-241 (1328)
361 cd03522 MoeA_like MoeA_like. T 42.1 1.3E+02 0.0028 28.5 8.0 69 107-177 157-230 (312)
362 cd03134 GATase1_PfpI_like A ty 42.0 44 0.00095 27.6 4.4 42 165-214 61-110 (165)
363 PRK13869 plasmid-partitioning 42.0 1.2E+02 0.0026 29.6 8.1 68 88-157 88-166 (405)
364 cd02990 UAS_FAF1 UAS family, F 41.5 1.8E+02 0.0039 24.1 7.8 15 174-188 117-131 (136)
365 cd06346 PBP1_ABC_ligand_bindin 41.5 2.8E+02 0.006 25.3 10.9 77 109-189 137-215 (312)
366 cd01233 Unc104 Unc-104 pleckst 41.4 30 0.00065 26.7 3.0 25 79-103 74-98 (100)
367 cd06337 PBP1_ABC_ligand_bindin 41.4 3E+02 0.0065 25.7 11.2 100 109-215 145-248 (357)
368 cd00758 MoCF_BD MoCF_BD: molyb 41.3 69 0.0015 25.9 5.4 57 131-188 22-85 (133)
369 cd06330 PBP1_Arsenic_SBP_like 41.2 1.6E+02 0.0034 27.2 8.5 78 108-189 137-218 (346)
370 PF12138 Spherulin4: Spherulat 41.0 62 0.0013 29.7 5.5 43 109-151 30-78 (253)
371 cd06286 PBP1_CcpB_like Ligand- 40.9 2.4E+02 0.0052 24.4 10.7 45 131-175 19-64 (260)
372 PF00169 PH: PH domain; Inter 40.9 33 0.00071 25.1 3.1 24 80-103 80-103 (104)
373 cd05805 MPG1_transferase GTP-m 40.9 1.4E+02 0.003 29.4 8.3 51 91-147 147-198 (441)
374 PRK11249 katE hydroperoxidase 40.8 79 0.0017 33.7 6.9 86 109-207 597-701 (752)
375 cd02037 MRP-like MRP (Multiple 40.8 1.1E+02 0.0025 25.3 6.8 63 113-177 2-78 (169)
376 PTZ00468 phosphofructokinase f 40.7 56 0.0012 36.8 5.9 55 158-213 792-850 (1328)
377 cd01230 PH_EFA6 EFA6 Pleckstri 40.5 39 0.00085 27.2 3.7 26 80-105 88-113 (117)
378 TIGR01768 GGGP-family geranylg 40.4 63 0.0014 29.2 5.3 54 154-211 15-68 (223)
379 smart00233 PH Pleckstrin homol 40.4 35 0.00075 24.3 3.2 24 80-103 78-101 (102)
380 PRK14178 bifunctional 5,10-met 40.4 3.1E+02 0.0068 25.6 10.4 97 91-190 8-111 (279)
381 cd06221 sulfite_reductase_like 40.3 1.6E+02 0.0035 26.4 8.2 78 109-189 127-212 (253)
382 cd06358 PBP1_NHase Type I peri 40.3 3E+02 0.0064 25.3 10.4 78 108-189 131-210 (333)
383 PRK14180 bifunctional 5,10-met 40.2 2.7E+02 0.0059 26.0 9.6 94 122-216 41-150 (282)
384 cd01252 PH_cytohesin Cytohesin 39.9 39 0.00085 27.0 3.7 26 79-104 89-114 (125)
385 PRK14314 glmM phosphoglucosami 39.6 1.6E+02 0.0034 29.1 8.6 49 92-146 158-206 (450)
386 PF04101 Glyco_tran_28_C: Glyc 39.3 56 0.0012 27.0 4.6 43 149-207 60-102 (167)
387 PRK03619 phosphoribosylformylg 39.3 1.7E+02 0.0037 25.9 8.0 51 110-177 1-52 (219)
388 cd01260 PH_CNK Connector enhan 39.3 32 0.00069 26.0 2.9 22 80-101 74-95 (96)
389 PRK10887 glmM phosphoglucosami 38.8 1.6E+02 0.0034 29.0 8.4 50 92-147 152-201 (443)
390 cd06280 PBP1_LacI_like_4 Ligan 38.6 2.7E+02 0.0058 24.3 10.2 46 131-176 19-65 (263)
391 PF02608 Bmp: Basic membrane p 38.5 1.3E+02 0.0028 28.0 7.4 56 131-188 23-81 (306)
392 PRK01175 phosphoribosylformylg 38.3 69 0.0015 29.5 5.4 54 110-175 4-57 (261)
393 cd06327 PBP1_SBP_like_1 Peripl 38.3 3.2E+02 0.0069 25.1 10.1 77 109-189 135-213 (334)
394 cd06291 PBP1_Qymf_like Ligand 38.2 2.7E+02 0.0058 24.2 9.2 47 131-177 19-66 (265)
395 PF01866 Diphthamide_syn: Puta 38.1 1.3E+02 0.0027 28.3 7.3 66 103-174 203-268 (307)
396 cd01250 PH_centaurin Centaurin 38.1 35 0.00075 25.1 2.9 22 80-101 72-93 (94)
397 cd01653 GATase1 Type 1 glutami 38.0 88 0.0019 22.3 5.1 69 132-208 16-90 (115)
398 PF13344 Hydrolase_6: Haloacid 37.9 1.9E+02 0.004 22.3 7.8 76 91-182 18-95 (101)
399 cd03026 AhpF_NTD_C TRX-GRX-lik 37.8 1.7E+02 0.0036 22.0 6.6 68 99-172 3-71 (89)
400 TIGR02637 RhaS rhamnose ABC tr 37.5 2.3E+02 0.005 25.5 8.9 59 131-189 18-80 (302)
401 PRK08250 glutamine amidotransf 37.5 1.1E+02 0.0024 27.4 6.6 89 110-218 1-104 (235)
402 TIGR00888 guaA_Nterm GMP synth 37.5 1.1E+02 0.0023 26.2 6.2 44 131-180 12-55 (188)
403 PRK14184 bifunctional 5,10-met 37.4 3.5E+02 0.0077 25.3 10.2 80 108-190 30-116 (286)
404 PF00462 Glutaredoxin: Glutare 37.2 1.2E+02 0.0026 20.4 5.4 44 131-175 13-57 (60)
405 PRK03604 moaC bifunctional mol 37.1 1.3E+02 0.0029 28.5 7.2 58 131-188 178-242 (312)
406 COG4242 CphB Cyanophycinase an 37.1 1.1E+02 0.0025 28.2 6.4 76 99-177 41-117 (293)
407 PRK00536 speE spermidine synth 37.0 20 0.00044 33.1 1.7 18 167-184 74-92 (262)
408 COG0655 WrbA Multimeric flavod 37.0 2E+02 0.0044 25.0 8.1 76 110-189 2-100 (207)
409 cd05803 PGM_like4 This PGM-lik 36.9 1.4E+02 0.003 29.5 7.6 48 92-145 151-201 (445)
410 PRK11041 DNA-binding transcrip 36.9 2.3E+02 0.0051 25.4 8.8 67 108-176 34-101 (309)
411 TIGR01120 rpiB ribose 5-phosph 36.8 1.5E+02 0.0033 24.8 6.8 57 129-216 13-75 (143)
412 PRK14181 bifunctional 5,10-met 36.7 3.6E+02 0.0079 25.3 10.3 121 91-216 8-145 (287)
413 cd03825 GT1_wcfI_like This fam 36.7 91 0.002 28.4 6.1 59 110-174 1-59 (365)
414 cd01246 PH_oxysterol_bp Oxyste 36.6 39 0.00084 24.6 2.9 22 80-101 69-90 (91)
415 TIGR01753 flav_short flavodoxi 36.6 1.6E+02 0.0035 23.2 6.9 79 113-205 2-88 (140)
416 PRK14318 glmM phosphoglucosami 36.5 1.8E+02 0.0038 28.7 8.4 48 92-147 158-205 (448)
417 TIGR01815 TrpE-clade3 anthrani 36.5 2.1E+02 0.0045 30.5 9.1 86 109-216 516-606 (717)
418 PRK06718 precorrin-2 dehydroge 36.5 2.9E+02 0.0063 24.1 10.5 53 164-216 68-137 (202)
419 cd06276 PBP1_FucR_like Ligand- 36.4 2.6E+02 0.0057 24.6 8.8 82 112-205 2-84 (247)
420 PRK08007 para-aminobenzoate sy 36.4 95 0.0021 26.8 5.7 77 130-216 12-90 (187)
421 PRK13527 glutamine amidotransf 36.4 1.4E+02 0.0029 26.0 6.8 72 131-216 17-95 (200)
422 PF00582 Usp: Universal stress 36.2 1.2E+02 0.0027 22.8 6.0 50 148-204 84-140 (140)
423 PRK14168 bifunctional 5,10-met 36.0 3.3E+02 0.0072 25.7 9.6 121 91-216 11-153 (297)
424 PRK14179 bifunctional 5,10-met 35.8 3.7E+02 0.0081 25.1 10.3 96 90-188 9-115 (284)
425 cd03145 GAT1_cyanophycinase Ty 35.8 1.5E+02 0.0032 26.2 7.0 64 108-177 28-94 (217)
426 cd01741 GATase1_1 Subgroup of 35.5 1.5E+02 0.0034 25.0 6.9 72 132-217 15-100 (188)
427 PLN02897 tetrahydrofolate dehy 35.5 4E+02 0.0087 25.7 10.2 99 90-191 63-172 (345)
428 cd03012 TlpA_like_DipZ_like Tl 35.3 2.2E+02 0.0047 22.3 8.5 45 131-179 74-118 (126)
429 PRK13146 hisH imidazole glycer 35.3 1.7E+02 0.0038 25.6 7.4 49 110-175 2-50 (209)
430 COG0014 ProA Gamma-glutamyl ph 35.2 75 0.0016 31.3 5.2 96 131-245 160-258 (417)
431 cd05799 PGM2 This CD includes 34.9 1.9E+02 0.004 28.9 8.3 47 91-143 164-212 (487)
432 KOG0333 U5 snRNP-like RNA heli 34.8 2.8E+02 0.006 28.7 9.2 67 97-172 506-573 (673)
433 PLN02616 tetrahydrofolate dehy 34.8 4E+02 0.0088 25.9 10.1 100 89-191 79-189 (364)
434 PRK12615 galactose-6-phosphate 34.8 1.6E+02 0.0034 25.5 6.7 21 129-149 14-34 (171)
435 PRK14190 bifunctional 5,10-met 34.8 3.9E+02 0.0084 25.0 10.1 122 91-216 11-150 (284)
436 cd06332 PBP1_aromatic_compound 34.7 3.4E+02 0.0074 24.5 9.6 75 109-189 134-209 (333)
437 TIGR01119 lacB galactose-6-pho 34.6 1.7E+02 0.0036 25.4 6.8 57 129-216 14-76 (171)
438 cd06298 PBP1_CcpA_like Ligand- 34.5 3.1E+02 0.0066 23.8 11.1 109 89-207 101-214 (268)
439 PRK10792 bifunctional 5,10-met 34.5 3.9E+02 0.0085 25.0 10.1 123 90-216 10-151 (285)
440 PRK09526 lacI lac repressor; R 34.4 3.6E+02 0.0079 24.6 10.3 66 108-175 62-129 (342)
441 COG0521 MoaB Molybdopterin bio 34.1 1.1E+02 0.0024 26.4 5.6 59 131-189 30-95 (169)
442 PRK12419 riboflavin synthase s 34.0 2.3E+02 0.0049 24.2 7.4 97 108-207 9-118 (158)
443 PRK13015 3-dehydroquinate dehy 33.9 1.7E+02 0.0037 24.7 6.5 43 129-172 31-73 (146)
444 cd01264 PH_melted Melted pleck 33.9 44 0.00095 26.3 2.9 24 79-102 77-100 (101)
445 PRK15424 propionate catabolism 33.8 1.3E+02 0.0027 30.9 6.9 66 109-186 107-172 (538)
446 cd06355 PBP1_FmdD_like Peripla 33.8 3.6E+02 0.0077 25.1 9.7 78 108-189 132-211 (348)
447 TIGR00114 lumazine-synth 6,7-d 33.7 2E+02 0.0043 23.9 6.9 94 111-207 2-108 (138)
448 PRK14316 glmM phosphoglucosami 33.7 2.3E+02 0.005 27.8 8.7 49 92-148 156-204 (448)
449 PRK05562 precorrin-2 dehydroge 33.7 3.6E+02 0.0077 24.3 9.4 91 121-215 32-152 (223)
450 cd03148 GATase1_EcHsp31_like T 33.7 66 0.0014 29.0 4.4 37 165-208 95-140 (232)
451 PRK14172 bifunctional 5,10-met 33.7 3.9E+02 0.0085 24.9 9.6 121 91-216 10-150 (278)
452 PF00994 MoCF_biosynth: Probab 33.4 1.4E+02 0.0031 24.2 6.1 57 131-188 20-83 (144)
453 cd00738 HGTP_anticodon HGTP an 33.4 1.9E+02 0.0041 21.0 6.5 43 131-175 21-63 (94)
454 COG0693 ThiJ Putative intracel 33.4 1.2E+02 0.0027 25.6 6.0 94 109-214 2-116 (188)
455 cd01989 STK_N The N-terminal d 33.3 2.4E+02 0.0053 22.3 7.6 47 133-179 70-117 (146)
456 PRK10401 DNA-binding transcrip 33.3 3.9E+02 0.0084 24.6 10.7 67 108-176 58-125 (346)
457 PRK09492 treR trehalose repres 33.1 3.7E+02 0.0079 24.2 10.7 67 108-176 61-128 (315)
458 cd00900 PH-like Pleckstrin hom 33.0 51 0.0011 23.4 3.1 23 79-101 76-98 (99)
459 PRK00061 ribH 6,7-dimethyl-8-r 33.0 2.2E+02 0.0048 24.1 7.2 97 108-207 11-120 (154)
460 PRK13525 glutamine amidotransf 32.9 2.2E+02 0.0047 24.6 7.4 52 109-180 1-52 (189)
461 PRK07053 glutamine amidotransf 32.9 72 0.0016 28.7 4.5 59 109-179 2-60 (234)
462 TIGR02329 propionate_PrpR prop 32.7 1.3E+02 0.0028 30.7 6.7 66 109-186 97-162 (526)
463 PRK15414 phosphomannomutase Cp 32.5 2.9E+02 0.0063 27.3 9.2 51 92-146 152-202 (456)
464 cd02812 PcrB_like PcrB_like pr 32.4 1.2E+02 0.0027 27.2 5.9 52 154-210 13-67 (219)
465 cd01740 GATase1_FGAR_AT Type 1 32.4 1.3E+02 0.0028 27.0 6.2 41 132-177 14-54 (238)
466 PRK14320 glmM phosphoglucosami 32.1 2.1E+02 0.0046 28.1 8.1 48 93-147 155-202 (443)
467 PF02016 Peptidase_S66: LD-car 32.0 38 0.00083 31.4 2.7 62 115-179 3-76 (284)
468 PF02601 Exonuc_VII_L: Exonucl 32.0 2.4E+02 0.0051 26.3 8.1 76 107-189 12-106 (319)
469 cd01987 USP_OKCHK USP domain i 31.9 2.3E+02 0.0051 21.6 10.3 86 90-181 13-101 (124)
470 PRK08284 precorrin 6A synthase 31.8 1E+02 0.0023 28.2 5.4 48 164-215 101-153 (253)
471 COG0041 PurE Phosphoribosylcar 31.8 1.8E+02 0.0039 24.9 6.3 84 111-207 4-90 (162)
472 cd06314 PBP1_tmGBP Periplasmic 31.8 3.5E+02 0.0077 23.7 9.6 56 131-186 18-76 (271)
473 TIGR00689 rpiB_lacA_lacB sugar 31.7 1.4E+02 0.003 25.1 5.7 57 129-216 12-74 (144)
474 PRK00170 azoreductase; Reviewe 31.6 2.8E+02 0.0062 23.5 8.0 38 109-147 1-41 (201)
475 cd01219 PH_FGD FGD (faciogenit 31.6 60 0.0013 25.0 3.3 25 80-104 76-100 (101)
476 TIGR00853 pts-lac PTS system, 31.5 1.8E+02 0.0039 22.3 6.0 81 109-205 3-83 (95)
477 COG1619 LdcA Uncharacterized p 31.5 1.3E+02 0.0027 28.7 6.0 74 110-186 10-94 (313)
478 cd02071 MM_CoA_mut_B12_BD meth 31.5 2.1E+02 0.0045 22.7 6.6 57 131-189 17-73 (122)
479 cd00466 DHQase_II Dehydroquina 31.4 1.7E+02 0.0037 24.5 6.1 43 129-172 29-71 (140)
480 PRK14174 bifunctional 5,10-met 31.3 4.5E+02 0.0098 24.7 10.2 79 91-173 9-96 (295)
481 PRK07649 para-aminobenzoate/an 31.3 1.1E+02 0.0023 26.7 5.3 49 129-182 11-59 (195)
482 PRK14194 bifunctional 5,10-met 31.2 4.6E+02 0.0099 24.8 10.2 80 90-173 11-98 (301)
483 TIGR02405 trehalos_R_Ecol treh 31.1 2.9E+02 0.0063 25.1 8.5 92 108-207 171-263 (311)
484 PRK14175 bifunctional 5,10-met 31.1 4.5E+02 0.0097 24.6 10.2 122 91-216 11-150 (286)
485 PF01884 PcrB: PcrB family; I 31.1 1.1E+02 0.0024 27.8 5.4 46 158-209 24-71 (230)
486 PRK08622 galactose-6-phosphate 31.1 1.4E+02 0.003 25.9 5.7 57 129-216 14-76 (171)
487 TIGR03453 partition_RepA plasm 31.0 2.5E+02 0.0054 27.0 8.2 68 88-157 73-149 (387)
488 cd00821 PH Pleckstrin homology 30.9 50 0.0011 23.2 2.7 22 80-101 74-95 (96)
489 cd05800 PGM_like2 This PGM-lik 30.6 2.9E+02 0.0063 27.2 8.8 49 92-146 153-202 (461)
490 cd03802 GT1_AviGT4_like This f 30.5 2.9E+02 0.0062 24.8 8.3 50 131-180 26-101 (335)
491 cd06350 PBP1_GPCR_family_C_lik 30.4 4.3E+02 0.0092 24.2 11.7 78 108-189 159-240 (348)
492 COG1611 Predicted Rossmann fol 30.4 78 0.0017 28.1 4.2 47 153-207 34-81 (205)
493 PRK09004 FMN-binding protein M 30.3 3.1E+02 0.0067 22.5 7.9 87 109-209 1-94 (146)
494 cd07098 ALDH_F15-22 Aldehyde d 30.2 2.9E+02 0.0063 27.2 8.8 105 113-235 150-257 (465)
495 cd00858 GlyRS_anticodon GlyRS 30.2 2.4E+02 0.0051 22.2 6.8 44 131-177 45-88 (121)
496 TIGR03407 urea_ABC_UrtA urea A 30.2 4.5E+02 0.0098 24.6 9.8 78 108-189 133-212 (359)
497 PRK05788 cobalamin biosynthesi 30.0 1.3E+02 0.0028 28.5 5.9 64 153-217 39-111 (315)
498 COG4974 XerD Site-specific rec 30.0 2.3E+02 0.0049 26.8 7.3 65 111-190 209-273 (300)
499 cd01266 PH_Gab Gab (Grb2-assoc 29.9 51 0.0011 25.7 2.7 24 80-103 85-108 (108)
500 PF03401 TctC: Tripartite tric 29.8 3E+02 0.0065 25.2 8.2 81 153-240 91-175 (274)
No 1
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=2.6e-65 Score=504.15 Aligned_cols=296 Identities=71% Similarity=1.162 Sum_probs=278.0
Q ss_pred CCccccceeeeeEEEeceeEEEEEccCCeEEEecCCcccccceeeEEEEEEcCceEEEEEeecCCCcccccCCCCceeEe
Q 022147 1 MDQIVQDTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRK 80 (302)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~w~~~~~~~~~~~~~vl~~~~~~~~~~i~~~~~~~~~~~c~~~~~~~~~~ 80 (302)
|+..++++++++|+|||.++.+||+++|+|+|++++++++++++||||+.++|.+++|+++++...+.+|++++++|+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (481)
T PLN02958 3 DELPSPAIISDRVLVNGVLTPLTLTAEGKLRWTDSGQRCLTVEKEVLGFVIEGSKIRVKTIVEKGGGICCRGSAGALARK 82 (481)
T ss_pred CcCCCCceeeeeEEECCEEeeEEeccCCEEEeecCCcceEEEeeeeeEEEEeCCEEEEEEEEecCCcccccCCCCCceee
Confidence 45667889999999999999999999999999998899999999999999999999999999988889999988899999
Q ss_pred eEEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHH
Q 022147 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (302)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~ 160 (302)
+++|.+.|.+.++.|+++|+++++..+||||++||+||.||++++.++|.+.++|+|+.++++++++.|++++||.++++
T Consensus 83 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~ 162 (481)
T PLN02958 83 DFVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVR 162 (481)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHH
Confidence 99999999999999999999999988999999999999999999999987789999999999999999999999999999
Q ss_pred HhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeee
Q 022147 161 VLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLL 240 (302)
Q Consensus 161 ~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~l 240 (302)
+++..+||.||++|||||+|||+|||+.+++|+.+.++|||+||+||||+||++|.+..|+|.++..|+.+|++|+.+++
T Consensus 163 ~~~~~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~~~~v 242 (481)
T PLN02958 163 TMDLSKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHKCSL 242 (481)
T ss_pred HhhhcCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCCceEE
Confidence 98888899999999999999999999999887777889999999999999999997767899999999999999999999
Q ss_pred eEEEEecCCeeEEEEEeeeeehhhhhchhhhhhcccCchhHHHHHHHHhhhhcccC
Q 022147 241 DVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYVCSYSSLVFTYM 296 (302)
Q Consensus 241 Dv~~v~~~~~~~f~~~~~~~G~~adv~~~sek~R~~G~~ry~~~~l~~l~~l~~y~ 296 (302)
|++++++++.++|++++++|||+|+++..++++||||++||.+++++.+.+++.|.
T Consensus 243 Dlg~v~~~~~~~f~vn~~g~GfdAdV~~~se~kr~lG~lrY~~~~l~~l~~~r~y~ 298 (481)
T PLN02958 243 DVATILQGETKFFSVLMLAWGLVADIDIESEKYRWMGSARLDFYGLQRILCLRQYN 298 (481)
T ss_pred eEEEEEcCCceEEEEEeeeeehhhhhhcccccccccchHHHHHHHHHHHHhcCCcc
Confidence 99999765556776778999999999999999999999999999999998877664
No 2
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-48 Score=376.73 Aligned_cols=193 Identities=51% Similarity=0.856 Sum_probs=181.6
Q ss_pred hhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHH
Q 022147 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev 182 (302)
+...+|+++++||+||++|+|+|.++|+++++|+|.++++.++++.|++++||+|+++.++..+||+|||+||||++|||
T Consensus 173 ~~~~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~hEV 252 (579)
T KOG1116|consen 173 VDSLKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGLLHEV 252 (579)
T ss_pred ccccCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcCHHHh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCC-eeEEEEEeeeee
Q 022147 183 VNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGK-TRFHSVLMLAWG 261 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~-~~~f~~~~~~~G 261 (302)
+|||+.|+||+++.++|||+||+||||+||++++|..|. .-+..|+..|++|..+++|+..+.... .++|++++++||
T Consensus 253 lNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~-~~~~~a~l~iirg~~t~~dv~~v~~~~~~~~fSfLs~~wG 331 (579)
T KOG1116|consen 253 LNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGP-DLPLLATLLIIRGRLTPMDVSVVEYAGKDRHFSFLSAAWG 331 (579)
T ss_pred hhccccccchhhHhcCceeEeecCCccHHHHHhhcccCc-ccchHHHHHHHccCCCchheeehhhccCcceEEEEeeeee
Confidence 999999999999999999999999999999999887663 136778899999999999999998643 458999999999
Q ss_pred hhhhhchhhhhhcccCchhHHHHHHHHhhhhcccC
Q 022147 262 LVADIDIESEKYRWMGSARIDFYVCSYSSLVFTYM 296 (302)
Q Consensus 262 ~~adv~~~sek~R~~G~~ry~~~~l~~l~~l~~y~ 296 (302)
|+||+++++||+||||+.||+++++++++++++|.
T Consensus 332 lIADiDI~SEk~R~mG~~Rf~lg~~~rl~~lr~Y~ 366 (579)
T KOG1116|consen 332 LIADVDIESEKYRWMGPARFTLGAFLRLIQLRKYK 366 (579)
T ss_pred eEEecccchHHHHhhcchhhhHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999994
No 3
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=4.9e-46 Score=368.46 Aligned_cols=280 Identities=26% Similarity=0.441 Sum_probs=227.6
Q ss_pred ceeeeeEEEece-eEEEEEccCCeEEEec-C-----Ccccc-----------cceeeEEEEEEcCceEEEEEeecCCCcc
Q 022147 7 DTLSDRVRVSGR-ITAMTLTGDGRLRWTD-G-----HQRSL-----------TLEKQVLGFVVEGSKIRIRAVVDGRDEI 68 (302)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~l~~~~~l~w~~-~-----~~~~~-----------~~~~~vl~~~~~~~~~~i~~~~~~~~~~ 68 (302)
-+|.+.+.++|. .+.|||++|+ |.|.+ . +..|+ ...+||+||+..+..+++.|.....+
T Consensus 19 ~~~~~~~~~~~~~~v~lt~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~-- 95 (601)
T PLN02204 19 SVLSSCLFLDHVGDVSLTLNSDG-LSWKCLDSSDNDGTTCLGIKFCEKSETEIKFSDVYAVEFINYGLIHSPKLSHAK-- 95 (601)
T ss_pred ccccceeeecccccEEEEEcCCc-eEEecccccccCCceeeccccccCcccceeeeeeeEEeeccccceecccccccc--
Confidence 367777777775 5788998888 99997 1 12221 11389999998776666544432222
Q ss_pred ccc----------------------CCCCceeEeeEEecCCChHHHHHHHHHHHhhhh-ccCCCcEEEEEEcCCCCCCch
Q 022147 69 CCG----------------------GRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFID-SFGRPKRLYIFVNPFGGKKIA 125 (302)
Q Consensus 69 ~c~----------------------~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~-~~~r~~r~~vivNP~sG~~~a 125 (302)
.|. ..+..|+...|+|.+.+...++.|++.|++.+. ...|||+++||+||.||++++
T Consensus 96 ~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~w~~~~~~f~~~d~~~~~~w~~~l~~~l~~~~~r~k~llVivNP~sGkg~~ 175 (601)
T PLN02204 96 GCFRERLSETQEMYRFTVHGFQRSRKEPCLWVLAVYTFGHKDLQTCQSWVDRLNASLNKEVGRPKNLLVFVHPLSGKGSG 175 (601)
T ss_pred hhhhccccccccceeeEEEEeeecccCCCcceeEEEeecCCCHHHHHHHHHHHHHHHhhccCCCceEEEEECCCCCCcch
Confidence 111 012257889999999999999999999999987 458999999999999999999
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhh---cCCCceEEEEcCCchHHHHHHHHhcCc------------
Q 022147 126 SKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD---LSKYDGIVCVSGDGILVEVVNGLLERE------------ 190 (302)
Q Consensus 126 ~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~---~~~~d~IVvvGGDGTl~evvngL~~~~------------ 190 (302)
.+.|+ .+.|+|+.++++++++.|++++||.++++++. +.+||+||++|||||+|||+|||+.+.
T Consensus 176 ~~~~~-~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVlNGL~~~r~~~~~p~~~~~~ 254 (601)
T PLN02204 176 SRTWE-TVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILNGYLLSRLKVPYPPSPSDS 254 (601)
T ss_pred HHHHH-HHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHHHHHHHhhhccccccccccccc
Confidence 99995 89999999999999999999999999987654 678999999999999999999998421
Q ss_pred -------------------------ccc------------------------------ccCCccEEEecCCChhhHHHhh
Q 022147 191 -------------------------DWN------------------------------DAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 191 -------------------------~~~------------------------------~~~~~plgiIP~GTgN~~A~sL 215 (302)
|+. ...++|||+||+||||+||+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGIIPaGSgN~~a~~~ 334 (601)
T PLN02204 255 VHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNERFRFGIIPAGSTDAIVMCT 334 (601)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCceEEEECCccHHHHHHHc
Confidence 000 0136899999999999999998
Q ss_pred hhccCCCccHHHHHHHHHhCCeeeeeEEEEecCC----------eeEEEEEeeeeehhhhhchhhhhhcccCchhHHHHH
Q 022147 216 LDLVGEPCKASNAILAVIRGHKRLLDVATILQGK----------TRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYV 285 (302)
Q Consensus 216 ~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~----------~~~f~~~~~~~G~~adv~~~sek~R~~G~~ry~~~~ 285 (302)
..+.++..++.+|+.|+.+++|+++|+.++ .+||+ +++++||+++|..++|++||||++||.+++
T Consensus 335 ----~g~~dp~taa~~Ii~G~~~~lDig~V~~~~~~~~~~~~~~~ryf~-s~ag~Gf~gdVi~esek~R~mG~~rY~~~g 409 (601)
T PLN02204 335 ----TGERDPVTSALHIILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAA-SFAGYGFYGDVISESEKYRWMGPKRYDYAG 409 (601)
T ss_pred ----cCCCCHHHHHHHHHhCCCeEeeEEEEecccccccccccccceEEE-EEeecchHHHHHHHhhhhcccchHHHHHHH
Confidence 447799999999999999999999996421 25665 589999999999999999999999999999
Q ss_pred HHHhhhhccc
Q 022147 286 CSYSSLVFTY 295 (302)
Q Consensus 286 l~~l~~l~~y 295 (302)
++.+...+.|
T Consensus 410 ~k~~~~~r~y 419 (601)
T PLN02204 410 TKVFLKHRSY 419 (601)
T ss_pred HHHHHhCCCc
Confidence 9998766555
No 4
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-39 Score=302.52 Aligned_cols=218 Identities=30% Similarity=0.461 Sum_probs=193.9
Q ss_pred CCceeEeeEEecCCChHHHHHHHHHHHhhhhc-cCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc
Q 022147 74 AGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDS-FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ 152 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~-~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~ 152 (302)
+.+|+...++|.+.+.++++.|.+.|...|.+ ..|||.++|||||++|+|+++++|+. |.++|-.+.+.++|+.|+++
T Consensus 122 k~~W~laq~tf~~~~~q~c~~W~~~l~~~L~k~~~RPknllvFinPfgGkG~g~ki~e~-V~~~F~la~v~tkvivTErA 200 (516)
T KOG1115|consen 122 KELWNLAQFTFGHMDLQTCQSWMDQLNYSLIKEVERPKNLLVFINPFGGKGNGSKIWET-VSKIFILAKVNTKVIVTERA 200 (516)
T ss_pred hhhcchhcceEecccHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCCCCcccchhhh-hhhhEEeeecceeEEEEccc
Confidence 34788899999999999999999999988765 48999999999999999999999964 99999999999999999999
Q ss_pred chHHHHHHHhh---cCCCceEEEEcCCchHHHHHHHHhcCcccccc------------CCccEEEecCCChhhHHHhhhh
Q 022147 153 LHAKEIVKVLD---LSKYDGIVCVSGDGILVEVVNGLLEREDWNDA------------IKVPLGVVPAGTGNGMIKSLLD 217 (302)
Q Consensus 153 ~~a~el~~~~~---~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~------------~~~plgiIP~GTgN~~A~sL~~ 217 (302)
+||.+.+.++. ...||+||+|||||.+||++||++.+.+..+. ..+.+||||+||+|.+..+..
T Consensus 201 nhA~d~~~ei~~~~~~~yDGiv~VGGDG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~- 279 (516)
T KOG1115|consen 201 NHAFDVMAEIQNKELHTYDGIVAVGGDGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTT- 279 (516)
T ss_pred cchhhhhhhCCHhhhhhcccEEEecCchhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEec-
Confidence 99999988876 56899999999999999999999987543321 257899999999999999884
Q ss_pred ccCCCccHHHHHHHHHhCCeeeeeEEEEecCCe-eEEEEEeeeeehhhhhchhhhhhcccCchhHHHHHHHHhhhhcccC
Q 022147 218 LVGEPCKASNAILAVIRGHKRLLDVATILQGKT-RFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYVCSYSSLVFTYM 296 (302)
Q Consensus 218 ~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~-~~f~~~~~~~G~~adv~~~sek~R~~G~~ry~~~~l~~l~~l~~y~ 296 (302)
...|+...+.+|+-|+...+|+++|.+.++ -.|+++.+|+||.+|+..++|||||||+.||++++++.++.++.|.
T Consensus 280 ---gt~D~~TSAlHI~lG~~l~vDVctVht~~kLiRysaSa~gYGFyGDvl~dSEKYRWmGp~RYDfsglKtflkH~~Ye 356 (516)
T KOG1115|consen 280 ---GTRDPVTSALHIILGRKLFVDVCTVHTIEKLIRYSASAAGYGFYGDVLSDSEKYRWMGPKRYDFSGLKTFLKHRSYE 356 (516)
T ss_pred ---cCCccccceeeeEeccceeeeeeeeeecchheeeehhhhcccccchhhhhhhhhhccCchhhhhHHHHHHHhccccc
Confidence 344777788999999999999999986443 4688888999999999999999999999999999999999998885
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=6e-36 Score=280.10 Aligned_cols=179 Identities=20% Similarity=0.358 Sum_probs=157.0
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
.++|+++|+||.||++++.+.| +++.+.|+++++++.++.|++++|+.++++++...++|.||++|||||+|||+|+|+
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~-~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~ 85 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAA-ERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLA 85 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHH-HHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhc
Confidence 3689999999999999988888 477889999999999999999999999999987788999999999999999999997
Q ss_pred cCccccccCCccEEEecCCChhhHHHhhhhccCCCc-cHHHHHHHHHhCCeeeeeEEEEecC--CeeEEEEEeeeeehhh
Q 022147 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPC-KASNAILAVIRGHKRLLDVATILQG--KTRFHSVLMLAWGLVA 264 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~-~~~~a~~~I~~g~~~~lDv~~v~~~--~~~~f~~~~~~~G~~a 264 (302)
.. ++|||+||+||+|+||++| |+|. ++..++..|..|+++++|+++++.. +.++|.+ ++++||+|
T Consensus 86 ~~-------~~~lgiiP~GT~NdfAr~l----g~~~~~~~~a~~~i~~g~~~~iDlg~v~~~~~~~~~f~n-~~~~G~~a 153 (306)
T PRK11914 86 GT-------DIPLGIIPAGTGNDHAREF----GIPTGDPEAAADVIVDGWTETVDLGRIQDDDGIVKWFGT-VAATGFDS 153 (306)
T ss_pred cC-------CCcEEEEeCCCcchhHHHc----CCCCCCHHHHHHHHHcCCceEEEEEEEecCCCCcEEEEE-EEeeehHH
Confidence 64 6899999999999999999 8886 7999999999999999999999752 2467875 79999999
Q ss_pred hhchhhhhhcc-cCchhHHHHHHHHhhhhcccCcccccC
Q 022147 265 DIDIESEKYRW-MGSARIDFYVCSYSSLVFTYMHAQTHI 302 (302)
Q Consensus 265 dv~~~sek~R~-~G~~ry~~~~l~~l~~l~~y~~~~~~~ 302 (302)
++...+++.|| +|+++|.+++++.+ ++|+|++++|
T Consensus 154 ~v~~~~~~~k~~~G~~aY~~~~l~~l---~~~~~~~~~i 189 (306)
T PRK11914 154 LVTDRANRMRWPHGRMRYNLAMLAEL---SKLRPLPFRL 189 (306)
T ss_pred HHHHHHHhccccCCchhhHHHHHHHH---HhcCCCcEEE
Confidence 99988887776 79999998887765 5566666543
No 6
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=4.7e-35 Score=273.33 Aligned_cols=174 Identities=21% Similarity=0.305 Sum_probs=152.9
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
++++++|+||.||++++.+.| +++++.|+.. ++++++.|+..+|+.++++++..+++|.||++|||||+|||+|+|+.
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~-~~i~~~l~~~-~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l~~ 79 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDL-ALIRAILEPE-MDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGTLSAVAGALIG 79 (300)
T ss_pred CceEEEEECCCCCCCchhhhH-HHHHHHHHhc-CceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHhc
Confidence 478999999999999987777 5888888874 89999999999999999999877889999999999999999999986
Q ss_pred CccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhhch
Q 022147 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv~~ 268 (302)
. ++|||+||+||+|+||++| |+|.++.+|+..|.+|+++++|++.+++ ++|.+ ++++||+|++..
T Consensus 80 ~-------~~~lgviP~GTgNdfAr~l----gi~~~~~~a~~~i~~g~~~~iDlg~vn~---~~fin-~a~~G~~a~v~~ 144 (300)
T PRK00861 80 T-------DIPLGIIPRGTANAFAAAL----GIPDTIEEACRTILQGKTRRVDVAYCNG---QPMIL-LAGIGFEAETVE 144 (300)
T ss_pred C-------CCcEEEEcCCchhHHHHHc----CCCCCHHHHHHHHHcCCcEEeeEEEECC---EEEEE-EEeccHHHHHHH
Confidence 5 6899999999999999999 8999999999999999999999999963 67774 799999999998
Q ss_pred hhh--hhcccCchhHHHHHHHHhhhhcccCcccccC
Q 022147 269 ESE--KYRWMGSARIDFYVCSYSSLVFTYMHAQTHI 302 (302)
Q Consensus 269 ~se--k~R~~G~~ry~~~~l~~l~~l~~y~~~~~~~ 302 (302)
..+ +++++|.++|.+.+++. +++|+|+.++|
T Consensus 145 ~~~~~~k~~~G~~aY~~~~l~~---l~~~~~~~~~i 177 (300)
T PRK00861 145 EADREAKNRFGILAYILSGLQQ---LRELESFEVEI 177 (300)
T ss_pred HhhHHHHhcccHHHHHHHHHHH---hccCCCeeEEE
Confidence 754 55688999998888765 56677776643
No 7
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.3e-34 Score=270.94 Aligned_cols=176 Identities=26% Similarity=0.356 Sum_probs=153.8
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
++|+++|+||.||++++.+.| .++.+.|++++++++++.|++.+|+.++++++..+++|.||++|||||+|||+|+|+.
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~-~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~ 79 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNL-PDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAE 79 (304)
T ss_pred CceEEEEECCcccchhHHHHH-HHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhh
Confidence 478999999999999877777 4788899999999999999999999999998877789999999999999999999987
Q ss_pred CccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhhch
Q 022147 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv~~ 268 (302)
+++ ++|||+||+||+|+||++| |+|.++.+|+..|..|.++++|++.+++ ++|.+ ++++|+++++..
T Consensus 80 ~~~-----~~~lgiiP~GT~NdfAr~l----gi~~~~~~a~~~i~~g~~~~vDlg~vn~---~~fln-~~g~G~~a~v~~ 146 (304)
T PRK13337 80 KEN-----RPKLGIIPVGTTNDFARAL----HVPRDIEKAADVIIEGHTVPVDIGKANN---RYFIN-IAGGGRLTELTY 146 (304)
T ss_pred CCC-----CCcEEEECCcCHhHHHHHc----CCCCCHHHHHHHHHcCCeEEEEEEEECC---EEEEe-eehhhHHHHHHH
Confidence 642 6899999999999999999 8899999999999999999999999964 77764 799999999986
Q ss_pred hh--hhhcccCchhHHHHHHHHhhhhcccCccccc
Q 022147 269 ES--EKYRWMGSARIDFYVCSYSSLVFTYMHAQTH 301 (302)
Q Consensus 269 ~s--ek~R~~G~~ry~~~~l~~l~~l~~y~~~~~~ 301 (302)
.. +.++++|+++|.+.++.. +++|+++.++
T Consensus 147 ~~~~~~k~~~G~~aY~~~~~~~---l~~~~~~~~~ 178 (304)
T PRK13337 147 EVPSKLKTMLGQLAYYLKGIEM---LPSLKATDVR 178 (304)
T ss_pred hcCHHHhcCcccHHHHHHHHHH---HhhCCCceEE
Confidence 63 355689999998888755 4556666544
No 8
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.2e-34 Score=274.80 Aligned_cols=178 Identities=22% Similarity=0.306 Sum_probs=153.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC-CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~-~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
++|++||+||.||++++.+.| .++++.|+.++++++++.|+ .++|+.++++++...++|.||++|||||+|||+|+|+
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~-~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~ 80 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNV-ADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIA 80 (334)
T ss_pred CceEEEEECCCCCchhHHHHH-HHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHh
Confidence 579999999999999988778 68899999999999987776 5689999999887778999999999999999999998
Q ss_pred cCccccccCCccEEEecCCChhhHHHhhhhccCCCc-cHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhh
Q 022147 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPC-KASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI 266 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~-~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv 266 (302)
..+ ..+|||+||+||+|+||++| |+|. ++.+++..|.+|+++++|++.+++ .++|.+ ++++|++|++
T Consensus 81 ~~~-----~~~~LgiiP~GTgNdfAr~L----gi~~~~~~~a~~~l~~g~~~~vD~g~v~~--~~~F~n-~ag~G~da~v 148 (334)
T PRK13055 81 PLE-----KRPKMAIIPAGTTNDYARAL----KIPRDNPVEAAKVILKNQTIKMDIGRANE--DKYFIN-IAAGGSLTEL 148 (334)
T ss_pred hcC-----CCCcEEEECCCchhHHHHHc----CCCCcCHHHHHHHHHcCCcEEeeEEEECC--CcEEEE-EehhccchHH
Confidence 753 26899999999999999999 8998 799999999999999999999962 377874 7999999999
Q ss_pred chhh--hhhcccCchhHHHHHHHHhhhhcccCcccccC
Q 022147 267 DIES--EKYRWMGSARIDFYVCSYSSLVFTYMHAQTHI 302 (302)
Q Consensus 267 ~~~s--ek~R~~G~~ry~~~~l~~l~~l~~y~~~~~~~ 302 (302)
.... ..++++|+++|.++++.. +++|.|++++|
T Consensus 149 ~~~~~~~~k~~~G~laY~~~~~~~---l~~~~~~~~~i 183 (334)
T PRK13055 149 TYSVPSQLKSMFGYLAYLAKGAEL---LPRVSPVPVRI 183 (334)
T ss_pred HHhcCHHHHhhccHHHHHHHHHHH---HHhcCCeeEEE
Confidence 8653 345678999998877666 56666666553
No 9
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=4.8e-34 Score=266.27 Aligned_cols=175 Identities=18% Similarity=0.288 Sum_probs=148.8
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
++++++|+||.||++++.+.| +++++.|+++|+++.++.|+...++ +.+++....++|.||++|||||+|||+|+|++
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~-~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~ 78 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISEL-DKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAGGDGTVDNVVNAMKK 78 (295)
T ss_pred CcEEEEEECCcccchhHHHHH-HHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEECCccHHHHHHHHHHh
Confidence 468999999999999987777 4788999999999888888776554 55556555789999999999999999999996
Q ss_pred CccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhhch
Q 022147 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv~~ 268 (302)
.. .++|||+||+||||+||++| |+|.++.+|+..|..|+.+++|++.+++ ++|. +++++||+|++..
T Consensus 79 ~~-----~~~~lgviP~GTgNdfAr~l----gi~~~~~~a~~~i~~g~~~~vDlg~v~~---~~f~-n~~~~G~~a~v~~ 145 (295)
T PRK13059 79 LN-----IDLPIGILPVGTANDFAKFL----GMPTDIGEACEQILKSKPKKVDLGKIND---KYFI-NVASTGLFTDVSQ 145 (295)
T ss_pred cC-----CCCcEEEECCCCHhHHHHHh----CCCCCHHHHHHHHHhCCcEEeeEEEECC---EEEE-EEEeeeechhhhh
Confidence 53 26899999999999999999 8999999999999999999999999964 6777 4899999999998
Q ss_pred hhh--hhcccCchhHHHHHHHHhhhhcccCccccc
Q 022147 269 ESE--KYRWMGSARIDFYVCSYSSLVFTYMHAQTH 301 (302)
Q Consensus 269 ~se--k~R~~G~~ry~~~~l~~l~~l~~y~~~~~~ 301 (302)
..+ +++++|+++|.+.+++.+ ++|.|+.++
T Consensus 146 ~~~~~~k~~~G~~aY~~~~~~~l---~~~~~~~~~ 177 (295)
T PRK13059 146 KTDVNLKNTIGKLAYYLKGLEEL---PNFRKLKVK 177 (295)
T ss_pred hccHHHhhCcchHHHHHHHHHHH---hcCCCeeEE
Confidence 753 567889999998887765 456666554
No 10
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=3.3e-34 Score=268.02 Aligned_cols=178 Identities=28% Similarity=0.432 Sum_probs=155.4
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
+++++.+|+||.||++++.+.| +++++.|+.++.++.++.|+..+||.++++++...+||.||++|||||+|||+|+|+
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~-~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~ 79 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLL-REVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLA 79 (301)
T ss_pred CCceEEEEEcccccccchhhHH-HHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHh
Confidence 4689999999999999999888 689999999999999999999999999999999889999999999999999999999
Q ss_pred cCccccccCCccEEEecCCChhhHHHhhhhccCCCcc-HHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhh
Q 022147 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCK-ASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI 266 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~-~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv 266 (302)
+++. .|||+||+||+|+||++| |+|.+ +..|+..|.+|+++++|++.+++ ++||.+ ++++|++|++
T Consensus 80 ~~~~------~~LgilP~GT~NdfAr~L----gip~~~~~~Al~~i~~g~~~~vDlg~~~~--~~~fin-~a~~G~~a~~ 146 (301)
T COG1597 80 GTDD------PPLGILPGGTANDFARAL----GIPLDDIEAALELIKSGETRKVDLGQVNG--RRYFIN-NAGIGFDAEV 146 (301)
T ss_pred cCCC------CceEEecCCchHHHHHHc----CCCchhHHHHHHHHHcCCeEEEeehhcCC--cceEEE-EeecchhHHH
Confidence 9852 239999999999999999 89995 99999999999999999997753 337775 7999999999
Q ss_pred chhhhhhcc--cCchhHHHHHHHHhhhhcccCcccccC
Q 022147 267 DIESEKYRW--MGSARIDFYVCSYSSLVFTYMHAQTHI 302 (302)
Q Consensus 267 ~~~sek~R~--~G~~ry~~~~l~~l~~l~~y~~~~~~~ 302 (302)
+..++..+| +|.++|.+.++.. +.++.|++++|
T Consensus 147 ~~~~~~~~k~~~g~~~y~~~~~~~---l~~~~~~~~~i 181 (301)
T COG1597 147 VAAVEEERKKGFGRLAYALAGLAV---LARLKPFRIEI 181 (301)
T ss_pred HHhhcHHHHhccchHHHHHHHHHh---ccccCCCcEEE
Confidence 999876555 5888877666544 66777776654
No 11
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=1.5e-33 Score=262.59 Aligned_cols=174 Identities=21% Similarity=0.224 Sum_probs=146.8
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCc
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~ 190 (302)
++++|+||.||..+ .|. ++.+.|++++++++++.|++++|+.++++++...++|.||++|||||+|||+|+|+.++
T Consensus 1 ~~~~I~N~~~~~~~---~~~-~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~ 76 (293)
T TIGR03702 1 KALLILNGKQADNE---DVR-EAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIR 76 (293)
T ss_pred CEEEEEeCCccchh---HHH-HHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhC
Confidence 47899999887332 453 66778999999999999999999999999987778999999999999999999998764
Q ss_pred cccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhhchhh
Q 022147 191 DWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIES 270 (302)
Q Consensus 191 ~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv~~~s 270 (302)
+. ..+|||+||+|||||||++| |+|.++.+++..|..|+++++|++.++. .++|. +++++||+|++....
T Consensus 77 ~~---~~~~lgiiP~GTgNdfAr~l----~ip~~~~~a~~~i~~g~~~~iDlg~v~~--~~~f~-n~~~~G~da~v~~~~ 146 (293)
T TIGR03702 77 DD---AAPALGLLPLGTANDFATAA----GIPLEPAKALKLALNGAAQPIDLARVNG--KHYFL-NMATGGFGTRVTTET 146 (293)
T ss_pred CC---CCCcEEEEcCCchhHHHHhc----CCCCCHHHHHHHHHhCCceeeeEEEECC--ccEEE-EEeecccchHhhhhh
Confidence 22 35799999999999999999 8999999999999999999999999963 36777 489999999998764
Q ss_pred --hhhcccCchhHHHHHHHHhhhhcccCccccc
Q 022147 271 --EKYRWMGSARIDFYVCSYSSLVFTYMHAQTH 301 (302)
Q Consensus 271 --ek~R~~G~~ry~~~~l~~l~~l~~y~~~~~~ 301 (302)
++++++|+++|.+++++.+. +|++++++
T Consensus 147 ~~~~k~~~G~~aY~~~~l~~l~---~~~~~~~~ 176 (293)
T TIGR03702 147 SEKLKKALGGAAYLITGLTRFS---ELTAASCE 176 (293)
T ss_pred hHHHHhccchHHHHHHHHHHHh---hCCCeEEE
Confidence 34567899999999887754 55555543
No 12
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=3.9e-33 Score=260.60 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=149.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
++++++|+||+++. .+.+. ++.+.|+++++++++..|++++|+.++++++...++|.||++|||||+|||+|+|+.
T Consensus 3 ~~~~~~i~N~~~~~---~~~~~-~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~ 78 (300)
T PRK13054 3 FPKSLLILNGKSAG---NEELR-EAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQ 78 (300)
T ss_pred CceEEEEECCCccc---hHHHH-HHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHh
Confidence 67999999998762 23564 567789999999999999999999999998877789999999999999999999987
Q ss_pred CccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhhch
Q 022147 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv~~ 268 (302)
++. ..++|||+||+||+|+||++| |+|.++.+|+..|..|+++++|++.+++ +++|.+ ++++||++++..
T Consensus 79 ~~~---~~~~~lgiiP~GTgNdfar~l----gi~~~~~~a~~~i~~g~~~~iDlg~v~~--~~~f~n-~~~~G~~a~v~~ 148 (300)
T PRK13054 79 LEG---DARPALGILPLGTANDFATAA----GIPLEPDKALKLAIEGRAQPIDLARVND--RTYFIN-MATGGFGTRVTT 148 (300)
T ss_pred hcc---CCCCcEEEEeCCcHhHHHHhc----CCCCCHHHHHHHHHhCCceEEEEEEEcC--ceEEEE-EeecchhHHHHH
Confidence 531 126899999999999999999 8999999999999999999999999963 337774 799999999987
Q ss_pred hh-h-hhcccCchhHHHHHHHHhhhhcccCcccccC
Q 022147 269 ES-E-KYRWMGSARIDFYVCSYSSLVFTYMHAQTHI 302 (302)
Q Consensus 269 ~s-e-k~R~~G~~ry~~~~l~~l~~l~~y~~~~~~~ 302 (302)
.. + .++.+|+++|.+.++..+ ++|+|++++|
T Consensus 149 ~~~~~~k~~~G~~~Y~~~~l~~l---~~~~~~~~~i 181 (300)
T PRK13054 149 ETPEKLKAALGGVAYLIHGLMRM---DTLKPDRCEI 181 (300)
T ss_pred hhHHHHHhccchHHHHHHHHHHH---hhCCCeEEEE
Confidence 65 3 345789999998887775 5666666543
No 13
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=4.8e-33 Score=258.39 Aligned_cols=168 Identities=21% Similarity=0.308 Sum_probs=146.1
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccc
Q 022147 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDW 192 (302)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~ 192 (302)
++|+||.||+++. .+ +++++.|+++|+++.+..|++.+|+.++++++ ..++|.||++|||||+|||+|+|+.+
T Consensus 1 ~~I~Np~sg~~~~--~~-~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~GGDGTv~~v~~~l~~~--- 73 (287)
T PRK13057 1 LLLVNRHARSGRA--AL-AAARAALEAAGLELVEPPAEDPDDLSEVIEAY-ADGVDLVIVGGGDGTLNAAAPALVET--- 73 (287)
T ss_pred CEEECCCCCCcch--hH-HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHH-HcCCCEEEEECchHHHHHHHHHHhcC---
Confidence 4799999998773 56 58899999999999999999999999999885 46799999999999999999999875
Q ss_pred cccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhhchhh--
Q 022147 193 NDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIES-- 270 (302)
Q Consensus 193 ~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv~~~s-- 270 (302)
++|||+||+||+|+||++| |+|.++.+++..|..|+.+++|++++++ ++|.+ ++++||+|++....
T Consensus 74 ----~~~lgiiP~GT~Ndfar~L----g~~~~~~~a~~~i~~~~~~~vD~g~~~~---~~f~n-~~g~G~da~v~~~~~~ 141 (287)
T PRK13057 74 ----GLPLGILPLGTANDLARTL----GIPLDLEAAARVIATGQVRRIDLGWVNG---HYFFN-VASLGLSAELARRLTK 141 (287)
T ss_pred ----CCcEEEECCCCccHHHHHc----CCCCCHHHHHHHHHcCCeEEeeEEEECC---EEEEE-EEecCccHHHHHHhhH
Confidence 6899999999999999999 8888999999999999999999999963 67764 79999999998763
Q ss_pred hhhcccCchhHHHHHHHHhhhhcccCcccccC
Q 022147 271 EKYRWMGSARIDFYVCSYSSLVFTYMHAQTHI 302 (302)
Q Consensus 271 ek~R~~G~~ry~~~~l~~l~~l~~y~~~~~~~ 302 (302)
++++.+|+++|.+.+++. |++|.|++++|
T Consensus 142 ~~k~~~G~~aY~~~~~~~---l~~~~~~~~~l 170 (287)
T PRK13057 142 ELKRRWGTLGYAIAALRV---LRRSRPFTAEI 170 (287)
T ss_pred HhhccCChhHHHHHHHHH---HhhCCCeEEEE
Confidence 455678999999887665 56677777653
No 14
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=8e-32 Score=250.47 Aligned_cols=176 Identities=26% Similarity=0.311 Sum_probs=151.1
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
++|+++|+||.||++++.+.+ +++.+.|+..+++++++.|++.+|+.+++++....++|.||++|||||+++++|+|..
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~ 79 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPL-REVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQ 79 (293)
T ss_pred CceEEEEECCCccchhhHHHH-HHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhc
Confidence 479999999999998888777 5788999999999999999999899888876655679999999999999999999987
Q ss_pred CccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCCeeE-EEEEeeeeehhhhhc
Q 022147 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRF-HSVLMLAWGLVADID 267 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~-f~~~~~~~G~~adv~ 267 (302)
..+ .+|||+||+||+|+||++| |+|.++.+++..+..++.+++|++.+++ ++ |. +++++|+++++.
T Consensus 80 ~~~-----~~~lgiiP~Gt~N~~a~~l----~i~~~~~~~~~~l~~~~~~~~Dlg~v~~---~~~fl-n~~g~G~~a~v~ 146 (293)
T TIGR00147 80 LDD-----IPALGILPLGTANDFARSL----GIPEDLDKAAKLVIAGDARAIDMGQVNK---QYCFI-NMAGGGFGTEIT 146 (293)
T ss_pred CCC-----CCcEEEEcCcCHHHHHHHc----CCCCCHHHHHHHHHcCCceEEEEEEECC---eEEEE-EEEeechhhHhH
Confidence 531 4699999999999999999 8888999999999999999999999964 66 76 479999999998
Q ss_pred hhh--hhhcccCchhHHHHHHHHhhhhcccCccccc
Q 022147 268 IES--EKYRWMGSARIDFYVCSYSSLVFTYMHAQTH 301 (302)
Q Consensus 268 ~~s--ek~R~~G~~ry~~~~l~~l~~l~~y~~~~~~ 301 (302)
... +.++.+|.++|.+++++.+ ++|+|+.++
T Consensus 147 ~~~~~~~k~~~g~~~Y~~~~l~~l---~~~~~~~~~ 179 (293)
T TIGR00147 147 TETPEKLKAALGSLSYILSGLMRM---DTLQPFRCE 179 (293)
T ss_pred hhCCHHHHhccchHHHHHHHHHHH---hhCCCeeEE
Confidence 664 3445789999998887665 567776654
No 15
>PRK12361 hypothetical protein; Provisional
Probab=99.97 E-value=5.6e-31 Score=264.59 Aligned_cols=175 Identities=22% Similarity=0.302 Sum_probs=149.9
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
-++++++|+||.||++++.+.+ +++++.|++. ++++++.|+..+|+.++++++..+++|.||++|||||+|||+|+|.
T Consensus 241 ~~~~~~iI~NP~SG~g~~~~~~-~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~l~ 318 (547)
T PRK12361 241 IHKRAWLIANPVSGGGKWQEYG-EQIQRELKAY-FDLTVKLTTPEISAEALAKQARKAGADIVIACGGDGTVTEVASELV 318 (547)
T ss_pred cCCceEEEECCCCCCCcHHHHH-HHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHh
Confidence 4678999999999999988777 5888889876 7899999999999999999987778999999999999999999998
Q ss_pred cCccccccCCccEEEecCCChhhHHHhhhhccCCC---ccHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhh
Q 022147 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEP---CKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVA 264 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~---~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~a 264 (302)
.. ++|||+||+||+||||++|+ |++ .++.+|+..|..|..+++|++.+++ ++|. +++++|+++
T Consensus 319 ~~-------~~~lgiiP~GTgNdfAr~L~---gi~~~~~~~~~a~~~i~~g~~~~iD~g~vn~---~~fl-n~agiG~da 384 (547)
T PRK12361 319 NT-------DITLGIIPLGTANALSHALF---GLGSKLIPVEQACDNIIQGHTQRIDTARCND---RLML-LLVGIGFEQ 384 (547)
T ss_pred cC-------CCCEEEecCCchhHHHHHhc---CCCCCCccHHHHHHHHHhCCCeEEEEEEEcC---eEEE-EEEeechhH
Confidence 75 68999999999999999983 344 3788999999999999999999964 6776 479999999
Q ss_pred hhchhh--hhhcccCchhHHHHHHHHhhhhcccCccccc
Q 022147 265 DIDIES--EKYRWMGSARIDFYVCSYSSLVFTYMHAQTH 301 (302)
Q Consensus 265 dv~~~s--ek~R~~G~~ry~~~~l~~l~~l~~y~~~~~~ 301 (302)
++..+. ++++.+|.++|..+++..+ ++|+++.++
T Consensus 385 ~v~~~~~~~~k~~~G~laY~~~~~~~l---~~~~~~~l~ 420 (547)
T PRK12361 385 KMIESADRERKNALGQLAYLDGLWRAV---NENETLTLT 420 (547)
T ss_pred HHHHhccHHHHhccCHHHHHHHHHHHh---hcCCCeeEE
Confidence 998774 3566789999998877665 555665543
No 16
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.95 E-value=2.4e-27 Score=195.41 Aligned_cols=126 Identities=41% Similarity=0.688 Sum_probs=107.4
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCC-ceEEEEcCCchHHHHHHHHhcC
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKY-DGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~-d~IVvvGGDGTl~evvngL~~~ 189 (302)
|++||+||+||++++. | +++++.|+..+.+++++.|++.+++.++++......+ |.||++|||||+|+++|+|+..
T Consensus 1 k~~vi~Np~sG~~~~~--~-~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~ 77 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--W-KKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGS 77 (130)
T ss_dssp SEEEEEETTSTTSHHH--H-HHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTS
T ss_pred CEEEEECCCCCCCchh--H-HHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhc
Confidence 5899999999999998 6 7999999999999999999999999998885555666 9999999999999999999988
Q ss_pred ccccccCCccEEEecCCChhhHHHhhhhccCCCccHHH-HHHHHHhCCeeeeeEEEEe
Q 022147 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASN-AILAVIRGHKRLLDVATIL 246 (302)
Q Consensus 190 ~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~-a~~~I~~g~~~~lDv~~v~ 246 (302)
.... ++|||+||+||+|+||++| |.|.++.. ++..+..+..+++|+++++
T Consensus 78 ~~~~---~~~l~iiP~GT~N~~ar~l----g~~~~~~~~a~~~~~~~~~~~~d~~~v~ 128 (130)
T PF00781_consen 78 DRED---KPPLGIIPAGTGNDFARSL----GIPSDPEANAALLIILGRVRKIDVGKVN 128 (130)
T ss_dssp TSSS-----EEEEEE-SSS-HHHHHT----T--SSHHH-HHHHHHHSEEEEEEEEEET
T ss_pred CCCc---cceEEEecCCChhHHHHHc----CCCCCcHHHHHHHHHhCCCcEeEEEEeC
Confidence 5322 6899999999999999999 77878887 7888888998899999985
No 17
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.88 E-value=1.4e-22 Score=189.77 Aligned_cols=180 Identities=30% Similarity=0.427 Sum_probs=145.3
Q ss_pred ccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 105 ~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
...||||++|++||.+.++.+...|.+...|+|+.+|++++++.|++.+||+.++..++- ..|.|+|+|||||+.||+.
T Consensus 56 p~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t-~~Dii~VaGGDGT~~eVVT 134 (535)
T KOG4435|consen 56 PETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDT-QEDIIYVAGGDGTIGEVVT 134 (535)
T ss_pred cccccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhcc-CCCeEEEecCCCcHHHhhH
Confidence 346889999999999999888888889999999999999999999999999999999874 5699999999999999999
Q ss_pred HHhcCccccccCCccEEEecCCChhhHHHhhhhcc----CCCccHHHHHHHHHhCCe---eeeeEEEEecCCeeEEEEEe
Q 022147 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLV----GEPCKASNAILAVIRGHK---RLLDVATILQGKTRFHSVLM 257 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~----g~~~~~~~a~~~I~~g~~---~~lDv~~v~~~~~~~f~~~~ 257 (302)
|++++.- ...|++++|.|--|.-..+..... ..-....+|+++++++.. .++||..-...-.+.|....
T Consensus 135 Gi~Rrr~----~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~~~gs~l~P~fgl~g 210 (535)
T KOG4435|consen 135 GIFRRRK----AQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDVTTEGSTLAPEFGLGG 210 (535)
T ss_pred HHHhccc----ccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhcccccceEEEEeccCCCccccccccCc
Confidence 9999842 378999999998876555432110 111245678899999876 67777762211246788889
Q ss_pred eeeehhhhhchhhhhhcccCchhHHHHHHHHh
Q 022147 258 LAWGLVADIDIESEKYRWMGSARIDFYVCSYS 289 (302)
Q Consensus 258 ~~~G~~adv~~~sek~R~~G~~ry~~~~l~~l 289 (302)
++||..-|+.....||++||+++-.++.+...
T Consensus 211 lswG~frdi~~~~~KyWYfgplk~~aA~f~s~ 242 (535)
T KOG4435|consen 211 LSWGWFRDIEDTRKKYWYFGPLKRRAAYFWSM 242 (535)
T ss_pred cchhhhhhhhhhhhheeeecHHHHHHHHHHHH
Confidence 99999999999999999999986555544443
No 18
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.88 E-value=2.3e-22 Score=164.81 Aligned_cols=104 Identities=33% Similarity=0.424 Sum_probs=77.9
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC--CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCc
Q 022147 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (302)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~--~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~ 190 (302)
+||+||+||++++.+++ ..+++.+... .++.|+ ..+++.++++++ ..+|.||++|||||+||++|+|++..
T Consensus 1 lvi~NP~sG~~~~~~~~-~~~~~~l~~~----~v~~t~~~~~~~~~~~~~~~--~~~d~vvv~GGDGTi~~vvn~l~~~~ 73 (124)
T smart00046 1 LVFVNPKSGGGKGVKLL-RKFRLLLNPA----QVFDLTKKGPAAALVIFRDL--PKFDRVLVCGGDGTVGWVLNALDKRE 73 (124)
T ss_pred CEEEcCCCCCCccHHHH-HHHHHHcCCc----eEEEEecCChHHHHHHHhhc--CcCCEEEEEccccHHHHHHHHHHhcc
Confidence 58999999999988766 4666666533 344554 345555665554 36899999999999999999998764
Q ss_pred cccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHH
Q 022147 191 DWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAI 229 (302)
Q Consensus 191 ~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~ 229 (302)
.. ...+|||+||+||+|+||++| |+|.++..+.
T Consensus 74 ~~--~~~~plgiiP~GTgNdfar~l----gi~~~~~~~~ 106 (124)
T smart00046 74 LP--LPEPPVAVLPLGTGNDLARSL----GWGGGYDGEK 106 (124)
T ss_pred cc--cCCCcEEEeCCCChhHHHHHc----CCCCCccccc
Confidence 21 122899999999999999999 6666655443
No 19
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-18 Score=173.43 Aligned_cols=177 Identities=18% Similarity=0.182 Sum_probs=129.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
-..++||+||+||.+.+..+. ..++.+|....+ +++-....+.-+..+.+.+ .+..|+|+|||||+-+|++.+-+
T Consensus 271 ~~PLlVfvNpKSGg~~G~~ll-~~f~~lLnp~QV-fdl~~~~~p~~gL~l~~~~---~~~riLVcGGDGTvGWVL~~i~~ 345 (634)
T KOG1169|consen 271 WRPLLVFVNPKSGGQQGERLL-RRFRYLLNPVQV-FDLLKRGGPRPGLTLFRDV---PDFRILVCGGDGTVGWVLGCIDK 345 (634)
T ss_pred CcceEEEEecCCcccccHHHH-HHHHHhcChhhE-EecccCCCCchhHHHHHhC---CcceEEEecCCCcchhhhhhHHH
Confidence 357999999999999998765 577777765442 4443333355555666554 34589999999999999999976
Q ss_pred CccccccCCccEEEecCCChhhHHHhhhhccCCCcc---HHHHHHHHHhCCeeeeeEEEEec----CC------------
Q 022147 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCK---ASNAILAVIRGHKRLLDVATILQ----GK------------ 249 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~---~~~a~~~I~~g~~~~lDv~~v~~----~~------------ 249 (302)
.........+|+||+|.|||||+++.|.|+.|.|.. +...+..|..+.+.++|-.+|.- ..
T Consensus 346 ~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~~~~~~~~~~~~ 425 (634)
T KOG1169|consen 346 LNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWKVLVEPQSGELVQYSLKPPEKG 425 (634)
T ss_pred hhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhhHHHHHHhhhhccceecceeeEEeeccccccccccccCCCcC
Confidence 432222347899999999999999999998887766 77888899999999999998841 01
Q ss_pred --e-eEEEEEeeeeehhhhhchhhhhhc----------ccCchhHHHHHHHHhh
Q 022147 250 --T-RFHSVLMLAWGLVADIDIESEKYR----------WMGSARIDFYVCSYSS 290 (302)
Q Consensus 250 --~-~~f~~~~~~~G~~adv~~~sek~R----------~~G~~ry~~~~l~~l~ 290 (302)
. ..+.+|++|+|.||.|.++...+| .+.++.|.-++.+..+
T Consensus 426 ~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~~f 479 (634)
T KOG1169|consen 426 DPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQETF 479 (634)
T ss_pred CCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchhhH
Confidence 1 234567999999999998864443 3455555555544443
No 20
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=99.61 E-value=2.2e-15 Score=146.58 Aligned_cols=154 Identities=23% Similarity=0.254 Sum_probs=114.1
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+-++.++|||||+||.+++.++. ..+-=+|.-..+ +++ ....+..|.|+-++.. .-.|++||||||+-+++..|
T Consensus 363 plmkPLLVFVNPKSGGNqGsK~l-q~f~WyLNPRQV-FDl-sq~GPK~aLEmyRKV~---nLRILaCGGDGTVGWiLStL 436 (1004)
T KOG0782|consen 363 PLMKPLLVFVNPKSGGNQGSKAL-QTFCWYLNPRQV-FDL-SQLGPKFALEMYRKVV---NLRILACGGDGTVGWILSTL 436 (1004)
T ss_pred CCCCceEEEecCCCCCcchHHHH-HHHHHhcChhhh-eeh-hccCcHHHHHHHHhcc---ceEEEEecCCCceeehhhhh
Confidence 45688999999999999988765 344444443322 332 2346777777777754 25799999999999999988
Q ss_pred hcCccccccCCccEEEecCCChhhHHHhhhhccCCCccH-HHHHHHHHhCCeeeeeEEEEec-------------CC---
Q 022147 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKA-SNAILAVIRGHKRLLDVATILQ-------------GK--- 249 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~-~~a~~~I~~g~~~~lDv~~v~~-------------~~--- 249 (302)
-.-.- ...+|++|+|.|||||+|+.|+|+.|....+ ...+.++..|.+..+|-+.+.- |-
T Consensus 437 D~L~l---~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEpNp~~~pEe~ddG~~~~ 513 (1004)
T KOG0782|consen 437 DNLNL---PPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEPNPSCNPEEEDDGMQSA 513 (1004)
T ss_pred hhcCC---CCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccCCCCCChhhhcccchhc
Confidence 65421 1368999999999999999999987766544 5667788889999999998841 10
Q ss_pred --eeEEEEEeeeeehhhhhchhh
Q 022147 250 --TRFHSVLMLAWGLVADIDIES 270 (302)
Q Consensus 250 --~~~f~~~~~~~G~~adv~~~s 270 (302)
-..|. +++++||||.|..+.
T Consensus 514 LPL~Vfn-NYFSlGfDAHVtLeF 535 (1004)
T KOG0782|consen 514 LPLTVFN-NYFSLGFDAHVTLEF 535 (1004)
T ss_pred cchhHhh-ccccccccceEEEEe
Confidence 12455 589999999998764
No 21
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.21 E-value=1.1e-10 Score=108.22 Aligned_cols=111 Identities=20% Similarity=0.250 Sum_probs=82.9
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHH-HHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIV-KVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~-~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+|+.++.|+ ++..+.+.+ +++...|+..++++.+.. ++..+++.... ..+...++|.||++|||||+.++++ +
T Consensus 1 m~v~iv~~~--~k~~~~~~~-~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~-~ 76 (277)
T PRK03708 1 MRFGIVARR--DKEEALKLA-YRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIEH-K 76 (277)
T ss_pred CEEEEEecC--CCHHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHHH-h
Confidence 578899998 556666666 688899999999887752 22222222222 1222346899999999999999999 7
Q ss_pred hcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
... ++|+..||+|+. +|...+ . |.+...++..+.+|..
T Consensus 77 ~~~-------~~pi~gIn~G~l-GFl~~~----~-~~~~~~~l~~i~~g~~ 114 (277)
T PRK03708 77 TKK-------DIPILGINMGTL-GFLTEV----E-PEETFFALSRLLEGDY 114 (277)
T ss_pred cCC-------CCeEEEEeCCCC-CccccC----C-HHHHHHHHHHHHcCCc
Confidence 654 789999999998 888887 3 5678889999999864
No 22
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.04 E-value=1.2e-09 Score=102.68 Aligned_cols=116 Identities=12% Similarity=0.095 Sum_probs=81.4
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
+++++++|+|| |+..+.+.+ +++...|++.|+++.+..++...+..+.........+|.||++|||||++++++.+.
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~-~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~~~~~~~ 78 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAA-ERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLAAARHLA 78 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHH-HHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHHHHHHHhc
Confidence 46789999999 666666655 578888999999887766554333222111222346899999999999999999997
Q ss_pred cCccccccCCccEEEecC-CChhhHHHhhhhccCCCccHHHHHHHHHhCCee
Q 022147 188 EREDWNDAIKVPLGVVPA-GTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~-GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~ 238 (302)
.. .+|+..|++ |+-.-++..- ....+ .+++..+.+|...
T Consensus 79 ~~-------~~pv~gin~~G~lGFL~~~~----~~~~~-~~~l~~i~~g~~~ 118 (305)
T PRK02645 79 PH-------DIPILSVNVGGHLGFLTHPR----DLLQD-ESVWDRLQEDRYA 118 (305)
T ss_pred cC-------CCCEEEEecCCcceEecCch----hhcch-HHHHHHHHcCCce
Confidence 54 789999998 7754444221 11223 6788999998643
No 23
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=98.82 E-value=2.4e-08 Score=93.63 Aligned_cols=73 Identities=27% Similarity=0.310 Sum_probs=57.3
Q ss_pred CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHH-HhhhhccCCCccHHHH
Q 022147 150 TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMI-KSLLDLVGEPCKASNA 228 (302)
Q Consensus 150 ~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A-~sL~~~~g~~~~~~~a 228 (302)
++..+...+++++...+.|.|+.+|||||..+|++++ .. ++|+.-||+|+-|... ..+ .|.+....
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av-~~-------~vPvLGipaGvk~~SgvfA~-----~P~~aa~l 150 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV-GA-------DVPVLGIPAGVKNYSGVFAL-----SPEDAARL 150 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc-cC-------CCceEeeccccceecccccc-----ChHHHHHH
Confidence 4566778889999888999999999999999999999 22 7999999999988775 333 24444445
Q ss_pred HHHHHhC
Q 022147 229 ILAVIRG 235 (302)
Q Consensus 229 ~~~I~~g 235 (302)
+..+++|
T Consensus 151 ~~~~lkg 157 (355)
T COG3199 151 LGAFLKG 157 (355)
T ss_pred HHHHhcc
Confidence 5566777
No 24
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.66 E-value=1.6e-07 Score=87.97 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=77.6
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC---cchHHHHHH-HhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVK-VLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~---~~~a~el~~-~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
++++.+++||. +..+.+.+ +.+...|++.++++.+..++. .+++..... .....++|.||++|||||+.++++
T Consensus 4 ~~~v~iv~~~~--k~~a~e~~-~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~ 80 (295)
T PRK01231 4 FRNIGLIGRLG--SSSVVETL-RRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLGAAR 80 (295)
T ss_pred CCEEEEEecCC--CHHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHHHHH
Confidence 56899999984 45666555 578888999998887655432 111111111 111236899999999999999999
Q ss_pred HHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCC
Q 022147 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGH 236 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~ 236 (302)
.+... ++|+.-|++|+- +|-..+ .+.+..+++..+.+|.
T Consensus 81 ~~~~~-------~~Pvlgin~G~l-GFl~~~-----~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 81 ALARH-------NVPVLGINRGRL-GFLTDI-----RPDELEFKLAEVLDGH 119 (295)
T ss_pred HhcCC-------CCCEEEEeCCcc-cccccC-----CHHHHHHHHHHHHcCC
Confidence 88643 789888999984 344433 2456778899999885
No 25
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.54 E-value=2.1e-07 Score=87.00 Aligned_cols=112 Identities=21% Similarity=0.270 Sum_probs=75.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch-HH--HH--HHHhhcCCCceEEEEcCCchHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AK--EI--VKVLDLSKYDGIVCVSGDGILVEV 182 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~-a~--el--~~~~~~~~~d~IVvvGGDGTl~ev 182 (302)
.++++.++.|| ++..+.+.. +++...|++.|+++.+........ .. .. ..++ ..++|.+|++|||||+..+
T Consensus 4 ~~~~i~iv~~~--~~~~~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~lGGDGT~L~a 79 (292)
T PRK03378 4 HFKCIGIVGHP--RHPTALTTH-EMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEI-GQQADLAIVVGGDGNMLGA 79 (292)
T ss_pred cCCEEEEEEeC--CCHHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-CCCCCEEEEECCcHHHHHH
Confidence 36789999998 445565554 688888999998765533211000 00 00 0112 2358999999999999999
Q ss_pred HHHHhcCccccccCCccEEEecCCChh-hHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 183 VNGLLEREDWNDAIKVPLGVVPAGTGN-GMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP~GTgN-~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
++.+... .+| ++|.++|| +|...+ . +.++..++..+.+|..
T Consensus 80 a~~~~~~-------~~P--ilgin~G~lGFl~~~----~-~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 80 ARVLARY-------DIK--VIGINRGNLGFLTDL----D-PDNALQQLSDVLEGHY 121 (292)
T ss_pred HHHhcCC-------CCe--EEEEECCCCCccccc----C-HHHHHHHHHHHHcCCc
Confidence 9988654 455 56666677 787776 2 5578889999999864
No 26
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=98.37 E-value=2.9e-07 Score=85.75 Aligned_cols=111 Identities=19% Similarity=0.314 Sum_probs=74.2
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhc-CCcEEEEEeCCcch-----------------------HHHHHHHhhcCC
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQLH-----------------------AKEIVKVLDLSK 166 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~a-g~~~~v~~T~~~~~-----------------------a~el~~~~~~~~ 166 (302)
|+.||.||. +..+.+.. +++...|.+. ++.+.+... -... ......+....+
T Consensus 1 kVgii~np~--~~~~~~~~-~~~~~~L~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (285)
T PF01513_consen 1 KVGIIANPN--KPEAIELA-NELARWLLEKQGIEVLVEGS-IAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEG 76 (285)
T ss_dssp -EEEEESSC--GHCCCHHH-HHHHHHHHHTTTEEEEEEHH-HHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCC
T ss_pred CEEEEEcCC--CHHHHHHH-HHHHHHHHhCCCEEEEEChH-HHHHHHHhccccccccccccccccccccchhhhhhcccC
Confidence 689999996 44555555 5788888887 543322111 0000 011123344578
Q ss_pred CceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCee
Q 022147 167 YDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (302)
Q Consensus 167 ~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~ 238 (302)
+|.||++|||||+-.+++.+... .+||.-|+.|| ++|-..+ .+.+...++..+.+|...
T Consensus 77 ~D~ii~lGGDGT~L~~~~~~~~~-------~~Pilgin~G~-lgfl~~~-----~~~~~~~~l~~~~~g~~~ 135 (285)
T PF01513_consen 77 VDLIIVLGGDGTFLRAARLFGDY-------DIPILGINTGT-LGFLTEF-----EPEDIEEALEKILAGEYS 135 (285)
T ss_dssp SSEEEEEESHHHHHHHHHHCTTS-------T-EEEEEESSS-STSSSSE-----EGCGHHHHHHHHHHTHCE
T ss_pred CCEEEEECCCHHHHHHHHHhccC-------CCcEEeecCCC-ccccccC-----CHHHHHHHHHHHhcCCeE
Confidence 99999999999999999998764 78999999999 5554444 245788888999987544
No 27
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.28 E-value=3.6e-06 Score=79.23 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=78.7
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchH---HHH-----------HHHhhcCCCceEEE
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA---KEI-----------VKVLDLSKYDGIVC 172 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a---~el-----------~~~~~~~~~d~IVv 172 (302)
.+++++.++.|| ++..+.+.. +++...|...|+++.+......... ... ...+ ....|.||+
T Consensus 3 ~~~~~I~iv~~~--~~~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~ 78 (306)
T PRK03372 3 TASRRVLLVAHT--GRDEATEAA-RRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLV 78 (306)
T ss_pred CCccEEEEEecC--CCHHHHHHH-HHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEE
Confidence 467889999998 445565554 6888889999988766442211000 000 0111 235799999
Q ss_pred EcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 173 VSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 173 vGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
+|||||+-.+++.+..+ .+||.-|++|+-.=++. + .+.+..+++..+.+|..
T Consensus 79 lGGDGT~L~aar~~~~~-------~~PilGIN~G~lGFL~~-~-----~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 79 LGGDGTILRAAELARAA-------DVPVLGVNLGHVGFLAE-A-----EAEDLDEAVERVVDRDY 130 (306)
T ss_pred EcCCHHHHHHHHHhccC-------CCcEEEEecCCCceecc-C-----CHHHHHHHHHHHHcCCc
Confidence 99999999999988765 78999999998543333 2 24567889999999874
No 28
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=98.26 E-value=6.9e-06 Score=76.86 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=76.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHH---HH-HHhhcCCCceEEEEcCCchHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKE---IV-KVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~e---l~-~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
+++++++.|+ ++..+.+.+ +.+...|+..++++.+...+... ++.+ .. +++ ...+|.||++|||||+.+++
T Consensus 5 ~~~v~iv~~~--~~~~~~e~~-~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDGt~l~~~ 80 (291)
T PRK02155 5 FKTVALIGRY--QTPGIAEPL-ESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI-GARADLAVVLGGDGTMLGIG 80 (291)
T ss_pred CCEEEEEecC--CCHHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh-ccCCCEEEEECCcHHHHHHH
Confidence 5679999998 445566555 67888888888876554322110 1000 11 222 23689999999999999999
Q ss_pred HHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
+.+... ++|+.-|.+|+-. |-... .+.+..+++..+.+|..
T Consensus 81 ~~~~~~-------~~pilGIn~G~lG-FL~~~-----~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 81 RQLAPY-------GVPLIGINHGRLG-FITDI-----PLDDMQETLPPMLAGNY 121 (291)
T ss_pred HHhcCC-------CCCEEEEcCCCcc-ccccC-----CHHHHHHHHHHHHcCCc
Confidence 998754 6788889999843 33333 23467788899998864
No 29
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=98.24 E-value=5.4e-07 Score=91.74 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=84.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
...++|++|.++|..++.++. +.++.+|.-..+ +++.- ..+.-+..+-..+ .--.|+|+||||++..|+..+..
T Consensus 194 ~spllv~insksgd~qg~~~l-rkfkq~lnp~qV-fdll~-~gp~~gL~~f~~~---d~friLvcggdGsv~wvls~~ds 267 (1099)
T KOG1170|consen 194 GSPLLVFINSKSGDSQGQRFL-RKFKQILNPIQV-FDLIA-GGPDFGLTFFSHF---ESFRILVCGGDGSVGWVLSAIDR 267 (1099)
T ss_pred CCceeEeecccCCCchhHHHH-HhhhhhcCHHHH-HHHHc-cCcchhhhhhhcc---cceEEEEecCCCCCcchHHHHHh
Confidence 356899999999999987654 566665543322 12111 1222222222222 22369999999999999988755
Q ss_pred CccccccCCccEEEecCCChhhHHHhhhhccCCCcc--HHHHHHHHHhCCeeeeeEEEEe
Q 022147 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCK--ASNAILAVIRGHKRLLDVATIL 246 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~--~~~a~~~I~~g~~~~lDv~~v~ 246 (302)
-.-. .+.-++++|.||||++|+.|+|+...+.+ ....+...-+..++.+|-.++.
T Consensus 268 ~~lh---~kcql~vlplgtgndlarvlgwg~a~~ddt~~p~il~~~eRastkmldrwsvm 324 (1099)
T KOG1170|consen 268 LNLH---SKCQLAVLPLGTGNDLARVLGWGHAFYDDTLLPQILRTMERASTKMLDRWSVM 324 (1099)
T ss_pred ccch---hhcccccccCCChHHHHHHhcccccCchhhccHHHHHHHHhhhhhhhhcchhh
Confidence 4221 37889999999999999999876433322 1245555566788888877763
No 30
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.20 E-value=1.1e-05 Score=75.41 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=75.2
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc--hH-HHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL--HA-KEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~--~a-~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.++++.++.||. + .+.+.. +++...|++.|+++.+....... .. ... .++ ....|.+|++|||||+-.+++
T Consensus 9 ~~~~i~ii~~~~--~-~~~~~~-~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~-~~~~Dlvi~iGGDGT~L~aa~ 82 (287)
T PRK14077 9 NIKKIGLVTRPN--V-SLDKEI-LKLQKILSIYKVEILLEKESAEILDLPGYGL-DEL-FKISDFLISLGGDGTLISLCR 82 (287)
T ss_pred cCCEEEEEeCCc--H-HHHHHH-HHHHHHHHHCCCEEEEecchhhhhcccccch-hhc-ccCCCEEEEECCCHHHHHHHH
Confidence 467899999995 4 666555 68888899888877654321100 00 000 122 135899999999999999999
Q ss_pred HHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCC
Q 022147 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGH 236 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~ 236 (302)
.+... .+|+--|.+|+ -+|-..+ .+.+...++..+.+|.
T Consensus 83 ~~~~~-------~~PilGIN~G~-lGFLt~~-----~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 83 KAAEY-------DKFVLGIHAGH-LGFLTDI-----TVDEAEKFFQAFFQGE 121 (287)
T ss_pred HhcCC-------CCcEEEEeCCC-cccCCcC-----CHHHHHHHHHHHHcCC
Confidence 88655 68888899998 3343332 2446778889999986
No 31
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.16 E-value=8.5e-06 Score=76.68 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=75.3
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc--chHH------------HHHHHhhcCCCceEEEEc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ--LHAK------------EIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~--~~a~------------el~~~~~~~~~d~IVvvG 174 (302)
++++.++.|| ++..+.++. +.+...|++.|+++.+...... ++.. .-...+. ...|.+|++|
T Consensus 1 m~~igiv~n~--~~~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iG 76 (305)
T PRK02649 1 MPKAGIIYND--GKPLAVRTA-EELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLG 76 (305)
T ss_pred CCEEEEEEcC--CCHHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcc-cCcCEEEEEe
Confidence 4679999998 445566555 6888889999987765432110 0000 0001221 3579999999
Q ss_pred CCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 175 GDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 175 GDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
||||+-.+++.+... .+|+--|.+|+= +|-..+ .+.+..+++..+++|..
T Consensus 77 GDGTlL~aar~~~~~-------~iPilGIN~G~l-GFLt~~-----~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 77 GDGTVLSAARQLAPC-------GIPLLTINTGHL-GFLTEA-----YLNQLDEAIDQVLAGQY 126 (305)
T ss_pred CcHHHHHHHHHhcCC-------CCcEEEEeCCCC-cccccC-----CHHHHHHHHHHHHcCCc
Confidence 999999999988754 788888999973 333322 24567788999999863
No 32
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.15 E-value=1.8e-05 Score=80.55 Aligned_cols=131 Identities=15% Similarity=0.223 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHH-HHH----Hh
Q 022147 88 SEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE-IVK----VL 162 (302)
Q Consensus 88 ~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~e-l~~----~~ 162 (302)
+++..++..+.+.+.. ..+|+++.++.|| ++..+.+.. +++...|...++++.+..... ....+ +.. ..
T Consensus 271 ~~~l~~~l~~~l~~~w--~~~~~~i~iv~~~--~~~~~~~~~-~~i~~~l~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 344 (569)
T PRK14076 271 NEILHKKLVGIFGNKW--RIKPTKFGIVSRI--DNEEAINLA-LKIIKYLDSKGIPYELESFLY-NKLKNRLNEECNLID 344 (569)
T ss_pred CHHHHHHHHHhhhhhc--ccCCcEEEEEcCC--CCHHHHHHH-HHHHHHHHHCCCEEEEechhh-hhhcccccccccccc
Confidence 4444444444443332 3689999999998 445566554 688888888888765542211 00000 000 01
Q ss_pred hcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 163 DLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 163 ~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
+....|.||++|||||+-.+++-+... .+||--|.+|+- +|-..+ .+.+..+++..+.+|..
T Consensus 345 ~~~~~dlvi~lGGDGT~L~aa~~~~~~-------~~PilGin~G~l-GFL~~~-----~~~~~~~~l~~~~~g~~ 406 (569)
T PRK14076 345 DIEEISHIISIGGDGTVLRASKLVNGE-------EIPIICINMGTV-GFLTEF-----SKEEIFKAIDSIISGEY 406 (569)
T ss_pred cccCCCEEEEECCcHHHHHHHHHhcCC-------CCCEEEEcCCCC-CcCccc-----CHHHHHHHHHHHHcCCc
Confidence 123579999999999999999987654 789988999983 333333 24567788999999863
No 33
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.15 E-value=1.6e-05 Score=74.49 Aligned_cols=111 Identities=15% Similarity=0.252 Sum_probs=74.9
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hH-------H-HH--HHHhhcCCCceEEEEcCCch
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HA-------K-EI--VKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a-------~-el--~~~~~~~~~d~IVvvGGDGT 178 (302)
|++.++.|| ++..+.+.. +++...|++.|+++.+....... .. . .. ...+ ....|.||++|||||
T Consensus 1 m~igii~~~--~~~~~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQT--YQESASPYI-QELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEEL-DGSADMVISIGGDGT 76 (292)
T ss_pred CEEEEEeCC--CCHHHHHHH-HHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhc-ccCCCEEEEECCcHH
Confidence 468999998 445565554 68888899999877654321100 00 0 00 0122 135899999999999
Q ss_pred HHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 179 LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 179 l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
+-.+++.+... ++|+--|.+|+- +|-..+ .+.+..+++..+.+|..
T Consensus 77 ~L~aa~~~~~~-------~~PilGIN~G~l-GFLt~~-----~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 77 FLRTATYVGNS-------NIPILGINTGRL-GFLATV-----SKEEIEETIDELLNGDY 122 (292)
T ss_pred HHHHHHHhcCC-------CCCEEEEecCCC-Cccccc-----CHHHHHHHHHHHHcCCc
Confidence 99999988765 689888999983 343333 24567788999999864
No 34
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.10 E-value=2.5e-05 Score=73.26 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=75.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc----------chHHHHHHHhhcCCCceEEEEcCCc
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~----------~~a~el~~~~~~~~~d~IVvvGGDG 177 (302)
.++++.++.|| ++..+.+.+ +++...|.+.|+++.+...... ++...-..++. ...|.+|++||||
T Consensus 4 ~~~~i~ii~~~--~~~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDG 79 (296)
T PRK04539 4 PFHNIGIVTRP--NTPDIQDTA-HTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGDG 79 (296)
T ss_pred CCCEEEEEecC--CCHHHHHHH-HHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCcH
Confidence 36789999998 445666555 6888889999988766432111 10000001221 3589999999999
Q ss_pred hHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 178 ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 178 Tl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
|+-.++..+... .+||.-|.+|+-.=++ .+ .+.+...++..+++|..
T Consensus 80 T~L~aa~~~~~~-------~~PilGIN~G~lGFL~-~~-----~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 80 TFLSVAREIAPR-------AVPIIGINQGHLGFLT-QI-----PREYMTDKLLPVLEGKY 126 (296)
T ss_pred HHHHHHHHhccc-------CCCEEEEecCCCeEee-cc-----CHHHHHHHHHHHHcCCc
Confidence 999999988665 7898889999832222 22 23467778889998863
No 35
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=98.05 E-value=1.9e-05 Score=78.25 Aligned_cols=116 Identities=14% Similarity=0.266 Sum_probs=76.4
Q ss_pred ccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHH-hcCCcEEEEEeCCc---------chHH-----HHHHHhhcCCCce
Q 022147 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLE-DANIQFTVQETTQQ---------LHAK-----EIVKVLDLSKYDG 169 (302)
Q Consensus 105 ~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~-~ag~~~~v~~T~~~---------~~a~-----el~~~~~~~~~d~ 169 (302)
....|++++||.|| ++..+.++. .++...|. ..|+.+.+...... +... +-..++. ..+|.
T Consensus 190 w~~~p~~VgIV~n~--~k~~a~el~-~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~Dl 265 (508)
T PLN02935 190 WESDPQTVLIITKP--NSTSVRVLC-AEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLH-TKVDL 265 (508)
T ss_pred ecCCCCEEEEEecC--CCHHHHHHH-HHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcc-cCCCE
Confidence 34569999999999 445555555 57777787 47776654321110 0000 0001111 36899
Q ss_pred EEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 170 IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
||++|||||+-.++..+... .+||.-|.+|+ -+|-..+ .+.+...++..|++|..
T Consensus 266 VIsiGGDGTlL~Aar~~~~~-------~iPILGIN~G~-LGFLt~i-----~~~e~~~~Le~il~G~y 320 (508)
T PLN02935 266 VITLGGDGTVLWAASMFKGP-------VPPVVPFSMGS-LGFMTPF-----HSEQYRDCLDAILKGPI 320 (508)
T ss_pred EEEECCcHHHHHHHHHhccC-------CCcEEEEeCCC-cceeccc-----CHHHHHHHHHHHHcCCc
Confidence 99999999999999987654 67888899998 4554333 24567788999999863
No 36
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.01 E-value=4.4e-05 Score=70.43 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=68.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
++++.++.|+.. .+.++. +++...|++.|+++.+. ..+.|.+|++|||||+-.+++.+..
T Consensus 2 ~~~i~iv~~~~~---~a~~~~-~~l~~~l~~~g~~~~~~----------------~~~~D~vi~lGGDGT~L~a~~~~~~ 61 (264)
T PRK03501 2 RRNLFFFYKRDK---ELVEKV-KPLKKIAEEYGFTVVDH----------------PKNANIIVSIGGDGTFLQAVRKTGF 61 (264)
T ss_pred CcEEEEEECCCH---HHHHHH-HHHHHHHHHCCCEEEcC----------------CCCccEEEEECCcHHHHHHHHHhcc
Confidence 347888888754 555554 68888999998865421 1357999999999999999988754
Q ss_pred CccccccCCccEEEecC-CChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 189 REDWNDAIKVPLGVVPA-GTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~-GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
.. .+|+--|.+ |+-.=+ ..+ .+.+..+++..+.+|..
T Consensus 62 ~~------~~pilgIn~~G~lGFL-~~~-----~~~~~~~~l~~i~~g~~ 99 (264)
T PRK03501 62 RE------DCLYAGISTKDQLGFY-CDF-----HIDDLDKMIQAITKEEI 99 (264)
T ss_pred cC------CCeEEeEecCCCCeEc-ccC-----CHHHHHHHHHHHHcCCc
Confidence 32 567766788 763333 332 24467788899998864
No 37
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.01 E-value=4e-05 Score=70.79 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=69.4
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
|++.++.|+ +.++.++. +++...|+..|++++ ..++|.+|++|||||+-.+++.+...
T Consensus 1 M~i~Ii~~~---~~~~~~~~-~~l~~~l~~~g~~~~------------------~~~~Dlvi~iGGDGT~L~a~~~~~~~ 58 (265)
T PRK04885 1 MKVAIISNG---DPKSKRVA-SKLKKYLKDFGFILD------------------EKNPDIVISVGGDGTLLSAFHRYENQ 58 (265)
T ss_pred CEEEEEeCC---CHHHHHHH-HHHHHHHHHcCCccC------------------CcCCCEEEEECCcHHHHHHHHHhccc
Confidence 457888773 45566554 688888988887631 13579999999999999999988662
Q ss_pred ccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 190 ~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
. .++|+--|.+|+ -+|-..+ .+.+..+++..+.+|..
T Consensus 59 ~-----~~iPilGIN~G~-lGFL~~~-----~~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 59 L-----DKVRFVGVHTGH-LGFYTDW-----RPFEVDKLVIALAKDPG 95 (265)
T ss_pred C-----CCCeEEEEeCCC-ceecccC-----CHHHHHHHHHHHHcCCc
Confidence 1 168988899998 4444444 34567788999999864
No 38
>PLN02727 NAD kinase
Probab=97.90 E-value=7.3e-05 Score=78.45 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=74.5
Q ss_pred ccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhc-CCcEEEEEeCCcchHH----HH----------HHHhhcCCCce
Q 022147 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQLHAK----EI----------VKVLDLSKYDG 169 (302)
Q Consensus 105 ~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~a-g~~~~v~~T~~~~~a~----el----------~~~~~~~~~d~ 169 (302)
+..+|++++||.+|.. .+.... ..+...|... |+++-+. +...+.. .+ ..++ ....|.
T Consensus 674 W~~p~rtVgIV~K~~~---ea~~~~-~eL~~~L~~~~gi~V~VE--~~~a~~l~~~~~~~~~~~~~~~~~~el-~~~~DL 746 (986)
T PLN02727 674 WKSTPKTVLLLKKLGQ---ELMEEA-KEVASFLYHQEKMNVLVE--PDVHDIFARIPGFGFVQTFYSQDTSDL-HERVDF 746 (986)
T ss_pred cCCCCCEEEEEcCCcH---HHHHHH-HHHHHHHHhCCCeEEEEe--cchHHHhhccccccccceecccchhhc-ccCCCE
Confidence 3467899999999965 455444 5778888876 7655332 2211111 00 0111 135899
Q ss_pred EEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 170 IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
||++|||||+-.+++.+... .+||.-|.+|+= +|-..+ .+.+..+++..|++|..
T Consensus 747 VIvLGGDGTlLrAar~~~~~-------~iPILGINlGrL-GFLTdi-----~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 747 VACLGGDGVILHASNLFRGA-------VPPVVSFNLGSL-GFLTSH-----YFEDFRQDLRQVIHGNN 801 (986)
T ss_pred EEEECCcHHHHHHHHHhcCC-------CCCEEEEeCCCc-cccccC-----CHHHHHHHHHHHHcCCc
Confidence 99999999999999988654 689988999982 332222 23456778888888863
No 39
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.72 E-value=0.00048 Score=63.38 Aligned_cols=100 Identities=14% Similarity=0.139 Sum_probs=63.9
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
+|+.+|.||.. ++.++ .+.++..+...++ ..+++|.||++|||||+-.+++-+...
T Consensus 1 ~~~~i~~~~~~---~s~~~-~~~l~~~~~~~~~--------------------~~~~~D~vi~iGGDGT~L~a~~~~~~~ 56 (259)
T PRK00561 1 MKYKIFASTTP---QTEPV-LPKLKKVLKKKLA--------------------VEDGADYLFVLGGDGFFVSTAANYNCA 56 (259)
T ss_pred CEEEEEeCCCH---HHHHH-HHHHHHHHhhCCC--------------------ccCCCCEEEEECCcHHHHHHHHHhcCC
Confidence 46888888743 44433 2456666654322 124689999999999999999887654
Q ss_pred ccccccCCccEEEecCCChhhHHHhhhhccCCCccHHH-HHHHHHhCCeeeeeEEEEe
Q 022147 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASN-AILAVIRGHKRLLDVATIL 246 (302)
Q Consensus 190 ~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~-a~~~I~~g~~~~lDv~~v~ 246 (302)
++|+.-|.+|+ -+|-..+ .+.+..+ .+..+.+.......+..+.
T Consensus 57 -------~iPilGIN~G~-lGFL~~~-----~~~~~~~~~~~~l~~~~~~~r~~L~~~ 101 (259)
T PRK00561 57 -------GCKVVGINTGH-LGFYTSF-----NETDLDQNFANKLDQLKFTQIDLLEVQ 101 (259)
T ss_pred -------CCcEEEEecCC-Ccccccc-----CHHHHHHHHHHHHhhCCeEEEEEEEEE
Confidence 78998899997 3333333 2334555 5555555555555555554
No 40
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.68 E-value=0.00011 Score=68.07 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=65.0
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHH-HHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV-KVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~-~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
+|+.+++|| ++..+.++. +++...| ..|+++.+.. ......... ......+.|.+|++|||||+-.+++.+
T Consensus 1 m~i~iv~~~--~~~~~~~~~-~~i~~~l-~~g~~~~~~~--~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~a~~~~-- 72 (271)
T PRK01185 1 MKVAFVIRK--DCKRCIKIA-KSIIELL-PPDWEIIYEM--EAAKALGMDGLDIEEINADVIITIGGDGTILRTLQRA-- 72 (271)
T ss_pred CEEEEEecC--CCHHHHHHH-HHHHHHH-hcCCEEEEec--hhhhhcCcccCcccccCCCEEEEEcCcHHHHHHHHHc--
Confidence 468899998 444555554 5777777 4576554322 111110000 011112579999999999998887754
Q ss_pred CccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
..|+.-|.+|+= +|-..+ .+.+..+++..+.+|..
T Consensus 73 --------~~PilGIN~G~l-GFL~~~-----~~~~~~~~l~~i~~g~~ 107 (271)
T PRK01185 73 --------KGPILGINMGGL-GFLTEI-----EIDEVGSAIKKLIRGEY 107 (271)
T ss_pred --------CCCEEEEECCCC-ccCccc-----CHHHHHHHHHHHHcCCc
Confidence 237777899983 443333 24567788899999863
No 41
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.59 E-value=0.0011 Score=60.95 Aligned_cols=97 Identities=20% Similarity=0.160 Sum_probs=64.2
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
|++.|+.+|. +.+.+ ++++..|.+.|+.+.... ... . .....|.||++|||||+-.+++.+
T Consensus 1 m~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~--~~~-------~-~~~~~d~vi~iGGDGT~L~a~~~~--- 61 (256)
T PRK14075 1 MKLGIFYREE-----KEKEA-KFLKEKISKEHEVVEFCE--ASA-------S-GKVTADLIIVVGGDGTVLKAAKKV--- 61 (256)
T ss_pred CEEEEEeCcc-----HHHHH-HHHHHHHHHcCCeeEeec--ccc-------c-ccCCCCEEEEECCcHHHHHHHHHc---
Confidence 4677776664 34444 688888988887554322 111 1 124679999999999999988876
Q ss_pred ccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCee
Q 022147 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (302)
Q Consensus 190 ~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~ 238 (302)
.+|+.-|.+|+- +|-..+ .+.+..+++..+.+|...
T Consensus 62 -------~~Pilgin~G~l-Gfl~~~-----~~~~~~~~l~~~~~g~~~ 97 (256)
T PRK14075 62 -------GTPLVGFKAGRL-GFLSSY-----TLEEIDRFLEDLKNWNFR 97 (256)
T ss_pred -------CCCEEEEeCCCC-cccccc-----CHHHHHHHHHHHHcCCcE
Confidence 357777888873 332232 234567788888988643
No 42
>PLN02929 NADH kinase
Probab=97.45 E-value=0.0007 Score=63.56 Aligned_cols=92 Identities=17% Similarity=0.265 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCCh--
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTG-- 208 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTg-- 208 (302)
+.++..|+++|+++.... +. + + ++ .....|.||++|||||+-.+++.+ .. .+|+.-|..|..
T Consensus 37 ~~~~~~L~~~gi~~~~v~--r~-~---~-~~-~~~~~Dlvi~lGGDGT~L~aa~~~-~~-------~iPvlGIN~Gp~~~ 100 (301)
T PLN02929 37 NFCKDILQQKSVDWECVL--RN-E---L-SQ-PIRDVDLVVAVGGDGTLLQASHFL-DD-------SIPVLGVNSDPTQK 100 (301)
T ss_pred HHHHHHHHHcCCEEEEee--cc-c---c-cc-ccCCCCEEEEECCcHHHHHHHHHc-CC-------CCcEEEEECCCccc
Confidence 678899999998874432 21 1 1 11 224689999999999999999987 44 678877888841
Q ss_pred -------hhHH--HhhhhccC-CCccHHHHHHHHHhCCee
Q 022147 209 -------NGMI--KSLLDLVG-EPCKASNAILAVIRGHKR 238 (302)
Q Consensus 209 -------N~~A--~sL~~~~g-~~~~~~~a~~~I~~g~~~ 238 (302)
|.|- +++++-.. .+.+..+++..+++|...
T Consensus 101 ~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~~ 140 (301)
T PLN02929 101 DEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRLK 140 (301)
T ss_pred ccccccccccccccCccccccCCHHHHHHHHHHHHcCCce
Confidence 2221 12322111 234677888999998644
No 43
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.06 E-value=0.0016 Score=60.44 Aligned_cols=92 Identities=15% Similarity=0.250 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCcEEEEEeCCc--chHHH---HHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQ--LHAKE---IVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~--~~a~e---l~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
+++...|++.|+++.+...... ++... -..++. ..+|.+|++|||||+-.++..+... ++|+--|.+
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGDGT~L~aa~~~~~~-------~~PilgIn~ 74 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIG-QRAQLAIVIGGDGNMLGRARVLAKY-------DIPLIGINR 74 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhC-cCCCEEEEECCcHHHHHHHHHhccC-------CCcEEEEeC
Confidence 3566778888887655432110 00000 002222 3589999999999999999988654 678888899
Q ss_pred CChhhHHHhhhhccCCCccHHHHHHHHHh-CC
Q 022147 206 GTGNGMIKSLLDLVGEPCKASNAILAVIR-GH 236 (302)
Q Consensus 206 GTgN~~A~sL~~~~g~~~~~~~a~~~I~~-g~ 236 (302)
|+-.-++ .+ .|.+..+++..+++ |.
T Consensus 75 G~lGFL~-~~-----~~~~~~~~l~~~~~~g~ 100 (272)
T PRK02231 75 GNLGFLT-DI-----DPKNAYEQLEACLERGE 100 (272)
T ss_pred CCCcccc-cC-----CHHHHHHHHHHHHhcCC
Confidence 9833222 22 23455667777777 64
No 44
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=96.69 E-value=0.012 Score=53.76 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=42.0
Q ss_pred CCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCee
Q 022147 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (302)
Q Consensus 165 ~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~ 238 (302)
+++|.||++|||||+-.+++.+... .+|+--|.+|+-.=++... .+.+...++..+..+...
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~-------~~PvlGIN~G~lGFL~~~~-----~~~e~~~~l~~~~~~~~~ 85 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNS-------GKPVYGMNRGSVGFLMNEY-----SEDDLLERIAAAEPTVLH 85 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCC-------CCeEEEEeCCCCCcccCCC-----CHHHHHHHHHHhhcCcEE
Confidence 3579999999999999999988765 6888889999742222111 123444555565655443
No 45
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=96.51 E-value=0.018 Score=53.61 Aligned_cols=111 Identities=24% Similarity=0.273 Sum_probs=69.2
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHH--HHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE--IVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~e--l~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
++.++.+|..-. +.... +.+...+...+....+... -.++... -..+.+.+.+|.|+++|||||+..+++.+..
T Consensus 2 ~~~i~~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~d~ivvlGGDGtlL~~~~~~~~ 77 (281)
T COG0061 2 KVGIVGRPDKPE--ALKIA-KRLYEFLKFKGVTVEVDQE-LAEELKDFADYVDDDEEKADLIVVLGGDGTLLRAARLLAR 77 (281)
T ss_pred eEEEEecCCcHH--HHHHH-HHHHHHHHhcCceEEEech-hhhhcccccccccccccCceEEEEeCCcHHHHHHHHHhcc
Confidence 566777764433 44332 4666666665554433211 1111110 0112223578999999999999999998877
Q ss_pred CccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCee
Q 022147 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~ 238 (302)
. .+|+--|..|+ =+|-..+ .+.+.+.++..+.+|..+
T Consensus 78 ~-------~~pilgin~G~-lGFLt~~-----~~~~~~~~~~~~~~~~~~ 114 (281)
T COG0061 78 L-------DIPVLGINLGH-LGFLTDF-----EPDELEKALDALLEGEYR 114 (281)
T ss_pred C-------CCCEEEEeCCC-ccccccc-----CHHHHHHHHHHHhcCceE
Confidence 6 68999999995 5555544 245677888888887554
No 46
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=96.23 E-value=0.049 Score=52.81 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=64.6
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC----CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~----~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.+|++|+..+.+-+..+ .+ +.+...|+..|+++.++.-- ..+...++++.+...+.|.||.+|| |++.++..
T Consensus 26 ~kr~livtd~~~~~~~g--~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK 101 (383)
T cd08186 26 ISKVLLVTGKSAYKKSG--AW-DKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAK 101 (383)
T ss_pred CCEEEEEcCccHHhhcC--hH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHH
Confidence 37899998776543322 34 57888999999887765311 2234456666666678999999998 67777665
Q ss_pred HHhc---Cccc----------cccCCccEEEecC--CChhhHHH
Q 022147 185 GLLE---REDW----------NDAIKVPLGVVPA--GTGNGMIK 213 (302)
Q Consensus 185 gL~~---~~~~----------~~~~~~plgiIP~--GTgN~~A~ 213 (302)
.+.. .+.. .....+|+..||. |||--...
T Consensus 102 ~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~ 145 (383)
T cd08186 102 SAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDR 145 (383)
T ss_pred HHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCC
Confidence 5532 1110 0113589999998 77655443
No 47
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=96.20 E-value=0.024 Score=51.94 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=62.2
Q ss_pred HHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE----eCCcchHHHHHHHhhcCCCceEEEEc
Q 022147 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 99 l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~----T~~~~~a~el~~~~~~~~~d~IVvvG 174 (302)
+.+.+... ..++++++..+.. .+.+.+.++..|+.+|+++.+.. .....+..++.+.+...++|.||.+|
T Consensus 10 l~~~l~~~-~~~~~lvv~d~~t-----~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vG 83 (250)
T PF13685_consen 10 LPEILSEL-GLKKVLVVTDENT-----YKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVG 83 (250)
T ss_dssp HHHHHGGG-T-SEEEEEEETTH-----HHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEE
T ss_pred HHHHHHhc-CCCcEEEEEcCCH-----HHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeC
Confidence 34445443 3478999987642 22345788999999999887553 22223344555555445789999998
Q ss_pred CCchHHHHHHHHhcCccccccCCccEEEecCC-ChhhHH
Q 022147 175 GDGILVEVVNGLLEREDWNDAIKVPLGVVPAG-TGNGMI 212 (302)
Q Consensus 175 GDGTl~evvngL~~~~~~~~~~~~plgiIP~G-TgN~~A 212 (302)
| ||++++..-...+. ++|+..+|.= |.|+|+
T Consensus 84 g-G~i~D~~K~~A~~~------~~p~isVPTa~S~DG~a 115 (250)
T PF13685_consen 84 G-GTIIDIAKYAAFEL------GIPFISVPTAASHDGFA 115 (250)
T ss_dssp S-HHHHHHHHHHHHHH------T--EEEEES--SSGGGT
T ss_pred C-cHHHHHHHHHHHhc------CCCEEEecccccccccc
Confidence 8 99999999887653 7899999984 444444
No 48
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=96.15 E-value=0.058 Score=51.81 Aligned_cols=100 Identities=22% Similarity=0.333 Sum_probs=64.1
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+..+.+-+..+ .+ +++...|+.+|+++.++.- ...+...++++.+...+.|.||.+|| |++.++...
T Consensus 26 ~r~lvVt~~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~aK~ 101 (357)
T cd08181 26 KRALIVTGKSSAKKNG--SL-DDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAAKA 101 (357)
T ss_pred CEEEEEeCCchHhhcC--cH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 7899998876643332 23 5788889999988776521 12233455666666678999999998 777777765
Q ss_pred Hhc---Ccc--------ccccCCccEEEecC--CChhhHHH
Q 022147 186 LLE---RED--------WNDAIKVPLGVVPA--GTGNGMIK 213 (302)
Q Consensus 186 L~~---~~~--------~~~~~~~plgiIP~--GTgN~~A~ 213 (302)
+.- .+. ......+|+..||. |||--...
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~ 142 (357)
T cd08181 102 IAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQ 142 (357)
T ss_pred HHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCC
Confidence 421 100 00123689999998 66655544
No 49
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=96.14 E-value=0.063 Score=51.89 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=59.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--C--CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--T--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~--~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.+|++||..+..-+ . ..+ +.+...|+.+++++.++.- . ..+...+.++.+...+.|.||.+|| |++.++..
T Consensus 23 ~~r~livt~~~~~~-~--g~~-~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AK 97 (375)
T cd08194 23 GKRPLIVTDKVMVK-L--GLV-DKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAK 97 (375)
T ss_pred CCeEEEEcCcchhh-c--chH-HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHH
Confidence 36889998765542 1 134 5788999999998766521 1 1223455666666678999999998 77777666
Q ss_pred HHh---cCcc---------ccccCCccEEEecC
Q 022147 185 GLL---ERED---------WNDAIKVPLGVVPA 205 (302)
Q Consensus 185 gL~---~~~~---------~~~~~~~plgiIP~ 205 (302)
.+. ..+. ......+|+..||.
T Consensus 98 aia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 98 AIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred HHHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 553 1110 00113689999997
No 50
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=96.05 E-value=0.066 Score=51.80 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=60.9
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+..+..-+ ...+ ++++..|+.+++++.++.- ...+...++++.+...++|.||.+|| |++.++...
T Consensus 29 ~~~lvv~~~~~~~---~~~~-~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVK---IGVV-EKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhh---cCcH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHH
Confidence 6888887765432 1233 6888999999988766521 11223445666665678999999998 677776665
Q ss_pred Hhc---Cc---------cccccCCccEEEecC--CChhhH
Q 022147 186 LLE---RE---------DWNDAIKVPLGVVPA--GTGNGM 211 (302)
Q Consensus 186 L~~---~~---------~~~~~~~~plgiIP~--GTgN~~ 211 (302)
+.- .+ .......+|+..||. |||--.
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~ 143 (377)
T cd08176 104 IGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEV 143 (377)
T ss_pred HHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhcc
Confidence 531 10 000123689999997 665544
No 51
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=95.95 E-value=0.03 Score=54.33 Aligned_cols=66 Identities=27% Similarity=0.592 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhh----hhccCCCcEEEEEEcCCCCCC--chhhhHHHHHHHHHHhcCCcEEEEEeCCcchHH
Q 022147 91 SKRLWCEKLRDF----IDSFGRPKRLYIFVNPFGGKK--IASKIFLDDVKPLLEDANIQFTVQETTQQLHAK 156 (302)
Q Consensus 91 ~~~~w~~~l~~~----l~~~~r~~r~~vivNP~sG~~--~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~ 156 (302)
..++|++.+.-+ |.....|+|+.|++.|--|.+ .|.+.|.+.|+|+|.++|++|+++...+.|+.+
T Consensus 45 i~~k~~~~V~~la~epl~~~~~PRKlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~AaglDyevv~g~rqGdIr 116 (382)
T PF11711_consen 45 IRQKWCDKVKHLAEEPLPPDELPRKLTVYIAPPPGDGLDVARKYFREYVKPILVAAGLDYEVVEGRRQGDIR 116 (382)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHHHHHHHHhhccceEEeccccccHHH
Confidence 556798887543 444568999999999988876 688899999999999999999999999999875
No 52
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=95.79 E-value=0.15 Score=49.01 Aligned_cols=91 Identities=11% Similarity=0.102 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE------eCCcchHHHHHHHhhcCCCc---eEEEEcCCchHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVLDLSKYD---GIVCVSGDGILV 180 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~------T~~~~~a~el~~~~~~~~~d---~IVvvGGDGTl~ 180 (302)
+|++|+..+.-. +.+.+.+...|+.+|+++.++. ..+.....++++.+...+.| .||.+|| |++.
T Consensus 24 ~rvlvVtd~~v~-----~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGG-Gsv~ 97 (355)
T cd08197 24 DKYLLVTDSNVE-----DLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGG-GVVG 97 (355)
T ss_pred CeEEEEECccHH-----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 688999886432 2245788999999988765433 12333455666666555565 8888886 8888
Q ss_pred HHHHHHhcCccccccCCccEEEecC--CChhh
Q 022147 181 EVVNGLLEREDWNDAIKVPLGVVPA--GTGNG 210 (302)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiIP~--GTgN~ 210 (302)
++...+...- ...+|+..||. |++.+
T Consensus 98 D~ak~~A~~~----~rgip~I~IPTTlla~~d 125 (355)
T cd08197 98 NIAGLLAALL----FRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred HHHHHHHHHh----ccCCCEEEecCccccccc
Confidence 8887764321 02689999999 45443
No 53
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=95.76 E-value=0.12 Score=49.09 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=59.7
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC-----CcchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~-----~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
.+|++||..+..-+ .+.+++...|+..++++.++..+ +.....++++.+.. +.|.||.+|| |++.++.
T Consensus 24 ~~kvlivtd~~~~~-----~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGG-Gsv~D~a 96 (332)
T cd08549 24 NSKIMIVCGNNTYK-----VAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGS-GTIIDLV 96 (332)
T ss_pred CCcEEEEECCcHHH-----HHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECC-cHHHHHH
Confidence 46889998865532 23367888999888877654322 23344566666655 8999999998 8888888
Q ss_pred HHHhcCccccccCCccEEEecCC
Q 022147 184 NGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP~G 206 (302)
..+.-. ..+|+..||.=
T Consensus 97 K~iA~~------~gip~I~VPTT 113 (332)
T cd08549 97 KFVSFK------VGKPFISVPTA 113 (332)
T ss_pred HHHHHH------cCCCEEEeCCC
Confidence 877533 26899999974
No 54
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=95.75 E-value=0.0098 Score=55.86 Aligned_cols=96 Identities=18% Similarity=0.280 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEe--c
Q 022147 127 KIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV--P 204 (302)
Q Consensus 127 ~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiI--P 204 (302)
+-+.+.+...|+.+|++..++.-.. +.+.+ ...|.||.+|||||+-.+..-+.... .+-||+= |
T Consensus 74 kn~~~~~~~~l~k~giesklv~R~~------lsq~i--~waD~VisvGGDGTfL~Aasrv~~~~------~PViGvNtDP 139 (395)
T KOG4180|consen 74 KNAIKFCQEELSKAGIESKLVSRND------LSQPI--RWADMVISVGGDGTFLLAASRVIDDS------KPVIGVNTDP 139 (395)
T ss_pred HHHHHHHHHHHhhCCcceeeeehhh------ccCcC--chhhEEEEecCccceeehhhhhhccC------CceeeecCCC
Confidence 3455788899999999876553322 33332 45799999999999988888666551 3444543 6
Q ss_pred CCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeee
Q 022147 205 AGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLL 240 (302)
Q Consensus 205 ~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~l 240 (302)
.||---++-.- ..|.++..|+..+..|.-..+
T Consensus 140 ~~Seg~lcL~~----~~~~n~~~al~k~~sgnF~wv 171 (395)
T KOG4180|consen 140 TGSEGHLCLPD----KYPSNPAGALCKLTSGNFEWV 171 (395)
T ss_pred CcCcceEeccc----cCCCCcHHHHHHHHhccHHHh
Confidence 67765555433 455667888888888765433
No 55
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=95.74 E-value=0.091 Score=50.90 Aligned_cols=95 Identities=21% Similarity=0.285 Sum_probs=60.0
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC--C--cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--Q--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~--~--~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+.-+.+.+... .+ +++...|+.+|+++.++.-- + .....+.++.+...++|.||.+|| |++.++...
T Consensus 29 ~r~livt~~~~~~~~~--~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 104 (382)
T cd08187 29 KKVLLVYGGGSIKKNG--LY-DRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDSAKA 104 (382)
T ss_pred CEEEEEeCCcHHHhcC--cH-HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHH
Confidence 7889987766554332 23 57888999989877654211 1 233445555555578999999998 777777765
Q ss_pred HhcC---cc---------ccccCCccEEEecC--CCh
Q 022147 186 LLER---ED---------WNDAIKVPLGVVPA--GTG 208 (302)
Q Consensus 186 L~~~---~~---------~~~~~~~plgiIP~--GTg 208 (302)
+.-. +. ......+|+..||. |||
T Consensus 105 ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTG 141 (382)
T cd08187 105 IAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATG 141 (382)
T ss_pred HHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchh
Confidence 5221 00 00113589999997 555
No 56
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=95.74 E-value=0.12 Score=50.12 Aligned_cols=97 Identities=20% Similarity=0.301 Sum_probs=60.1
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCC--cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~--~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+..+..-+. ..+ +.+...|+++|+++.++. ..+ .+...+.++.+...++|.||.+|| |++.++...
T Consensus 31 ~~~lvvtd~~~~~~---g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 105 (382)
T PRK10624 31 KKALIVTDKTLVKC---GVV-AKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDTCKA 105 (382)
T ss_pred CEEEEEeCcchhhC---cch-HHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHH
Confidence 68888887643321 133 678899999999887652 111 233445555555568999999998 677777654
Q ss_pred H---hcCcc----c-------cccCCccEEEecC--CChhhH
Q 022147 186 L---LERED----W-------NDAIKVPLGVVPA--GTGNGM 211 (302)
Q Consensus 186 L---~~~~~----~-------~~~~~~plgiIP~--GTgN~~ 211 (302)
+ ...++ + .....+|+..||. |||--.
T Consensus 106 ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~ 147 (382)
T PRK10624 106 IGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEV 147 (382)
T ss_pred HHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhh
Confidence 3 22211 0 0113589999997 555433
No 57
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=95.65 E-value=0.13 Score=49.16 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=59.3
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe------CCcchHHHHHHHhhcCCC---ceEEEEcCCc
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKY---DGIVCVSGDG 177 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T------~~~~~a~el~~~~~~~~~---d~IVvvGGDG 177 (302)
...+|++|+.++..-+ .+.+.+...|+.+|+++.++.- .+.+...++++.+...+. |.||.+|| |
T Consensus 22 ~~~~~~livtd~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-G 95 (345)
T cd08195 22 PKGSKILIVTDENVAP-----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-G 95 (345)
T ss_pred cCCCeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-h
Confidence 3457899999875542 2446889999998887764432 233445556655554444 88999987 8
Q ss_pred hHHHHHHHHhcCccccccCCccEEEecC
Q 022147 178 ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 178 Tl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
++.++...+.... ...+|+..||.
T Consensus 96 sv~D~ak~vA~~~----~rgip~i~VPT 119 (345)
T cd08195 96 VVGDLAGFVAATY----MRGIDFIQIPT 119 (345)
T ss_pred HHHhHHHHHHHHH----hcCCCeEEcch
Confidence 8888877764210 02689999997
No 58
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=95.60 E-value=0.073 Score=50.85 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=58.1
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe---C-CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---T-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T---~-~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++||..+.+- ... .+++...|+.+++++.++.- + ..+...++++.....++|.||.+|| |++.++...
T Consensus 23 ~r~liv~d~~~~----~~~-~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~ 96 (345)
T cd08171 23 KKVVVIGGKTAL----AAA-KDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKV 96 (345)
T ss_pred CEEEEEeCHHHH----HHH-HHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHH
Confidence 788888776443 122 36888999999987754432 1 2223344555555568999999998 888898888
Q ss_pred HhcCccccccCCccEEEecC
Q 022147 186 LLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (302)
+... ..+|+..||.
T Consensus 97 ia~~------~~~p~i~VPT 110 (345)
T cd08171 97 LADK------LGKPVFTFPT 110 (345)
T ss_pred HHHH------cCCCEEEecC
Confidence 7554 2679999997
No 59
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=95.55 E-value=0.16 Score=49.11 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=61.4
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--e--CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++||..+.+-+.. ..+ +++...|+.+++++.++. . ...+...+.++.+...++|.||.+|| |++.++...
T Consensus 26 ~r~livt~~~~~~~~--g~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~aK~ 101 (380)
T cd08185 26 KKALIVTGNGSSKKT--GYL-DRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTAKA 101 (380)
T ss_pred CeEEEEeCCCchhhc--cHH-HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHH
Confidence 789999987653222 234 688899999998876542 1 12233455556665678999999998 666666655
Q ss_pred Hhc---Ccc--------------ccccCCccEEEecC--CChhh
Q 022147 186 LLE---RED--------------WNDAIKVPLGVVPA--GTGNG 210 (302)
Q Consensus 186 L~~---~~~--------------~~~~~~~plgiIP~--GTgN~ 210 (302)
+.- .+. ......+|+..||. |||--
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE 145 (380)
T cd08185 102 IAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSE 145 (380)
T ss_pred HHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhc
Confidence 521 110 00113589999996 66543
No 60
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=95.48 E-value=0.2 Score=47.96 Aligned_cols=87 Identities=23% Similarity=0.265 Sum_probs=60.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC--cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~--~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.+|++||..+..-+ .+.+.+...|+..+ .+.++...+ .+...++++.+...+.|.||.+|| |++.++...+
T Consensus 34 ~~~~livtd~~~~~-----~~~~~l~~~l~~~~-~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGG-Gsv~D~ak~v 106 (350)
T PRK00843 34 TGRALIVTGPTTKK-----IAGDRVEENLEDAG-DVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGG-GKVIDVAKLA 106 (350)
T ss_pred CCeEEEEECCcHHH-----HHHHHHHHHHHhcC-CeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCC-chHHHHHHHH
Confidence 36899998876542 23467888888877 665544333 233445666665567899999998 8999988887
Q ss_pred hcCccccccCCccEEEecCCCh
Q 022147 187 LEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTg 208 (302)
... ..+|+..||.=.+
T Consensus 107 A~~------rgip~I~IPTT~~ 122 (350)
T PRK00843 107 AYR------LGIPFISVPTAAS 122 (350)
T ss_pred HHh------cCCCEEEeCCCcc
Confidence 643 2789999997443
No 61
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=95.42 E-value=0.1 Score=49.95 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=58.4
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE-e-C-CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-T-T-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~-T-~-~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+|.+|+..+.+-+ ..+ +++...|+.+++.+++.. . + ..+...++++.+...++|.||.+|| |++.++...+
T Consensus 23 ~~~liv~~~~~~~----~~~-~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~aK~i 96 (349)
T cd08550 23 SKVAVVGGKTVLK----KSR-PRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG-GKTLDTAKAV 96 (349)
T ss_pred CeEEEEEChHHHH----HHH-HHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHH
Confidence 6788887765533 223 688899998887543332 2 2 2234455666665568999999998 8899988888
Q ss_pred hcCccccccCCccEEEecC
Q 022147 187 LEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (302)
... ..+|+..||.
T Consensus 97 a~~------~~~p~i~VPT 109 (349)
T cd08550 97 ADR------LDKPIVIVPT 109 (349)
T ss_pred HHH------cCCCEEEeCC
Confidence 643 2679999997
No 62
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=95.33 E-value=0.22 Score=48.22 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=59.4
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCC--cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~--~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+..+..-+. ..+ +.+...|+..++++.++. ..+ .+...+.++.+...+.|.||.+|| |.+.++...
T Consensus 30 ~r~lvvt~~~~~~~---g~~-~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~aKa 104 (379)
T TIGR02638 30 KKALVVTDKDLIKF---GVA-DKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDTAKA 104 (379)
T ss_pred CEEEEEcCcchhhc---cch-HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHH
Confidence 68899887643221 133 678899999999887652 111 233445566665678999999998 666666654
Q ss_pred Hh---cCcc-----------ccccCCccEEEecC--CChh
Q 022147 186 LL---ERED-----------WNDAIKVPLGVVPA--GTGN 209 (302)
Q Consensus 186 L~---~~~~-----------~~~~~~~plgiIP~--GTgN 209 (302)
+. ..+. ......+|+..||. |||-
T Consensus 105 ia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGs 144 (379)
T TIGR02638 105 IGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAA 144 (379)
T ss_pred HHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhh
Confidence 32 2110 00123589999998 5543
No 63
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=95.31 E-value=0.19 Score=48.74 Aligned_cols=99 Identities=19% Similarity=0.284 Sum_probs=60.0
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC----CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~----~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+.-+..- ....+ +++...|+.+++.+.++.-. ..+...+.++.+...+.|.||.+|| |..-++...
T Consensus 32 ~~~livt~~~~~---~~g~~-~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGG-GS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLT---KLGMA-GDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG-GSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchh---hCccH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHHH
Confidence 688887754321 12245 58899999999887655321 2234455566665678999999998 555555544
Q ss_pred Hhc---Ccc---------ccccCCccEEEecC--CChhhHHH
Q 022147 186 LLE---RED---------WNDAIKVPLGVVPA--GTGNGMIK 213 (302)
Q Consensus 186 L~~---~~~---------~~~~~~~plgiIP~--GTgN~~A~ 213 (302)
+.- .+. ......+|+..||. |||--...
T Consensus 107 ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~ 148 (383)
T PRK09860 107 IALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTR 148 (383)
T ss_pred HHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCc
Confidence 421 110 00113589999997 77654443
No 64
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=95.27 E-value=0.17 Score=48.18 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=61.0
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC--cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~--~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
+|++|+..+...+ .+.+.+...|+.++ .+.++.... .+...++.+.+...+.|.||.+|| |++.++...+.
T Consensus 26 ~~~liv~d~~~~~-----~~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGG-Gs~~D~aK~~a 98 (339)
T cd08173 26 GRVLVVTGPTTKS-----IAGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDIGADFVIGVGG-GRVIDVAKVAA 98 (339)
T ss_pred CeEEEEECCchHH-----HHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCC-chHHHHHHHHH
Confidence 6889998775532 23468889999888 665554333 233445666665568899999997 89999988886
Q ss_pred cCccccccCCccEEEecCCCh
Q 022147 188 EREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GTg 208 (302)
.. ..+|+..||.=.+
T Consensus 99 ~~------~~~p~i~iPTT~~ 113 (339)
T cd08173 99 YK------LGIPFISVPTAAS 113 (339)
T ss_pred Hh------cCCCEEEecCccc
Confidence 43 2689999997544
No 65
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=95.25 E-value=0.27 Score=47.24 Aligned_cols=87 Identities=16% Similarity=0.241 Sum_probs=57.9
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE-e-----CCcchHHHHHHHhhcC---CCceEEEEcCCchH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-T-----TQQLHAKEIVKVLDLS---KYDGIVCVSGDGIL 179 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~-T-----~~~~~a~el~~~~~~~---~~d~IVvvGGDGTl 179 (302)
.+|++|+..+...+ .+.+.+.+.|+..++++.++. . .+.+...++++.+... +.|.||.+|| |++
T Consensus 31 ~~~~livtd~~~~~-----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 104 (358)
T PRK00002 31 GKKVAIVTDETVAP-----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGG-GVI 104 (358)
T ss_pred CCeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cHH
Confidence 47899999765522 244788999999998877532 1 1223444555555433 4599999987 888
Q ss_pred HHHHHHHhcCccccccCCccEEEecC
Q 022147 180 VEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
.++...+.... ...+|+..||.
T Consensus 105 ~D~aK~iA~~~----~~gip~i~IPT 126 (358)
T PRK00002 105 GDLAGFAAATY----MRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHh----cCCCCEEEcCc
Confidence 88888775211 12689999998
No 66
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=95.18 E-value=0.28 Score=47.48 Aligned_cols=95 Identities=21% Similarity=0.290 Sum_probs=57.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eC--CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~--~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+..+..-+ ...+ +++...|+..++++.++. .. ..++..+.++.+...+.|.||.+|| |++-++...
T Consensus 29 ~~~livt~~~~~~---~~~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GsviD~AK~ 103 (377)
T cd08188 29 KKVLLVSDPGVIK---AGWV-DRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGG-GSPIDCAKG 103 (377)
T ss_pred CeEEEEeCcchhh---CccH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6888887654321 1123 578889999888876653 11 1233445555555578999999998 666676644
Q ss_pred H---hcCcc---------ccccCCccEEEecC--CChh
Q 022147 186 L---LERED---------WNDAIKVPLGVVPA--GTGN 209 (302)
Q Consensus 186 L---~~~~~---------~~~~~~~plgiIP~--GTgN 209 (302)
+ +..+. ......+|+..||. |||-
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgS 141 (377)
T cd08188 104 IGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGA 141 (377)
T ss_pred HHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCcccc
Confidence 3 22110 00112479999998 6653
No 67
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=95.00 E-value=0.23 Score=48.17 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=60.5
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC----cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~----~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+..+...+ ...+ +.+...|+.+++++.++.-.. .....+.++.+...+.|.||.+|| |++.++...
T Consensus 23 ~~~livt~~~~~~---~~~~-~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 97 (386)
T cd08191 23 SRALIVTDERMAG---TPVF-AELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-GSCIDLAKI 97 (386)
T ss_pred CeEEEEECcchhh---cchH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 7899998765543 1234 578889999999887663221 222334455555578999999998 777777666
Q ss_pred Hh---cCcc---------ccccCCccEEEecC--CChhhH
Q 022147 186 LL---ERED---------WNDAIKVPLGVVPA--GTGNGM 211 (302)
Q Consensus 186 L~---~~~~---------~~~~~~~plgiIP~--GTgN~~ 211 (302)
+. .++. ......+|+..||. |||--.
T Consensus 98 ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~ 137 (386)
T cd08191 98 AGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEV 137 (386)
T ss_pred HHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhh
Confidence 53 2110 01112589999997 454433
No 68
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=94.97 E-value=0.15 Score=49.22 Aligned_cols=99 Identities=20% Similarity=0.293 Sum_probs=60.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+..+.+-+..+ .+ +++...|+.+|+++.++.. ...+...+.++.+...+.|.||.+|| |++.++...
T Consensus 24 ~r~livt~~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~AK~ 99 (375)
T cd08179 24 KKAFIVTGGGSMKKFG--FL-DKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAAKA 99 (375)
T ss_pred CeEEEEeCchHHHhCC--hH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 6888887654433222 33 6788999999998876532 22233445566666678999999998 566666555
Q ss_pred Hh---cCcc--cc----------ccCCccEEEecC--CChhhHH
Q 022147 186 LL---ERED--WN----------DAIKVPLGVVPA--GTGNGMI 212 (302)
Q Consensus 186 L~---~~~~--~~----------~~~~~plgiIP~--GTgN~~A 212 (302)
+. ..+. .. ....+|+..||. |||--..
T Consensus 100 ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t 143 (375)
T cd08179 100 MWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVT 143 (375)
T ss_pred HHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhC
Confidence 42 2211 00 012479999997 5654333
No 69
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=94.95 E-value=0.27 Score=47.27 Aligned_cols=88 Identities=18% Similarity=0.290 Sum_probs=58.5
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE--E----eCCcchHHHHHHHhhcCCC----ceEEEEcCCc
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--E----TTQQLHAKEIVKVLDLSKY----DGIVCVSGDG 177 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~--~----T~~~~~a~el~~~~~~~~~----d~IVvvGGDG 177 (302)
.++|++||..+..-+ .+.+.+.+.|+.+++++..+ . ..+.+...++.+.+...+. |.||.+|| |
T Consensus 25 ~~~~~lvVtd~~v~~-----~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG-G 98 (354)
T cd08199 25 GSGRRFVVVDQNVDK-----LYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG-G 98 (354)
T ss_pred CCCeEEEEECccHHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-c
Confidence 568899999775431 23468889999888887743 2 2233445555555544444 99998887 8
Q ss_pred hHHHHHHHHhcCccccccCCccEEEecC
Q 022147 178 ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 178 Tl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
++.++...+...-. ..+|+..||.
T Consensus 99 ~v~D~ak~~A~~~~----rg~p~i~VPT 122 (354)
T cd08199 99 VLTDVAGLAASLYR----RGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHHHHHhc----CCCCEEEEcC
Confidence 88888888762100 2678888888
No 70
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=94.92 E-value=0.2 Score=48.31 Aligned_cols=84 Identities=18% Similarity=0.325 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe---CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T---~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+|++||..+..- .. +.+++...|+..++.+.+... ...+...++++.+...+.|.||.+|| |++.++...+
T Consensus 30 ~~~livtd~~~~----~~-~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~i 103 (366)
T PRK09423 30 KRALVIADEFVL----GI-VGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAV 103 (366)
T ss_pred CEEEEEEChhHH----HH-HHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHH
Confidence 788888865442 22 347888999988886532211 12223345555555568999999998 8888888887
Q ss_pred hcCccccccCCccEEEecC
Q 022147 187 LEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (302)
... ..+|+..||.
T Consensus 104 A~~------~~~p~i~IPT 116 (366)
T PRK09423 104 ADY------LGVPVVIVPT 116 (366)
T ss_pred HHH------cCCCEEEeCC
Confidence 643 2689999997
No 71
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=94.71 E-value=0.19 Score=47.94 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=59.3
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe-CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T-~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
+|++||..+..- .. +.+.++..|+..++.+.++.- ...+...++++.+...++|.||.+|| |++.++...+..
T Consensus 24 ~~~liv~d~~~~----~~-~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGG-Gs~~D~aK~ia~ 97 (347)
T cd08172 24 KRPLIVTGPRSW----AA-AKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGG-GKVLDTAKAVAD 97 (347)
T ss_pred CeEEEEECHHHH----HH-HHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHH
Confidence 789999987662 22 346788888666665543321 33445556666666678999999998 899998888865
Q ss_pred CccccccCCccEEEecC
Q 022147 189 REDWNDAIKVPLGVVPA 205 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~ 205 (302)
.. .+|+..||.
T Consensus 98 ~~------~~p~i~VPT 108 (347)
T cd08172 98 RL------GVPVITVPT 108 (347)
T ss_pred Hh------CCCEEEecC
Confidence 42 679999997
No 72
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=94.70 E-value=0.23 Score=47.48 Aligned_cols=84 Identities=15% Similarity=0.276 Sum_probs=57.3
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eC-CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~-~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+|++|+.-+.+. ... .+++...|+.+++.+.+.. .+ ..++..+.++.+...+.|.||.+|| |++.++...+
T Consensus 23 ~r~livt~~~~~----~~~-~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~i 96 (351)
T cd08170 23 KRALIIADEFVL----DLV-GAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAV 96 (351)
T ss_pred CeEEEEECHHHH----HHH-HHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHH
Confidence 788888744332 223 3688999999988764221 11 2233445556665678999999999 7888888877
Q ss_pred hcCccccccCCccEEEecC
Q 022147 187 LEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (302)
... ..+|+..||.
T Consensus 97 a~~------~~~P~iaIPT 109 (351)
T cd08170 97 ADY------LGAPVVIVPT 109 (351)
T ss_pred HHH------cCCCEEEeCC
Confidence 543 2689999997
No 73
>PRK10586 putative oxidoreductase; Provisional
Probab=94.67 E-value=0.46 Score=45.85 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=62.7
Q ss_pred HHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC-CcchHHHHHHHhhcCCCceEEEEcCCc
Q 022147 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 99 l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~-~~~~a~el~~~~~~~~~d~IVvvGGDG 177 (302)
|.+.+...+. +|++||.-+. +.+.....+.+.|+.+++.+..+.-+ ...+..++.+... .+.|.||.+|| |
T Consensus 25 l~~~~~~~g~-~~~lvv~g~~-----~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGG-G 96 (362)
T PRK10586 25 LHDFFTDEQL-SRAVWIYGER-----AIAAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAASG-DDRQVVIGVGG-G 96 (362)
T ss_pred HHHHHHhcCC-CeEEEEEChH-----HHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHhc-cCCCEEEEecC-c
Confidence 4444444433 5778776542 22223356778899888877544322 2334445555443 46899999987 7
Q ss_pred hHHHHHHHHhcCccccccCCccEEEecCCChhhH
Q 022147 178 ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGM 211 (302)
Q Consensus 178 Tl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~ 211 (302)
.+.++...+.... .+|+..||.=.+|+-
T Consensus 97 s~iD~aK~~a~~~------~~p~i~vPT~a~t~s 124 (362)
T PRK10586 97 ALLDTAKALARRL------GLPFVAIPTIAATCA 124 (362)
T ss_pred HHHHHHHHHHhhc------CCCEEEEeCCccccc
Confidence 8888888887652 689999998555543
No 74
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=94.63 E-value=0.36 Score=45.74 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=56.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC-cEEEEEeCCcchHHHHHHHhhcC-CCceEEEEcCCchHHHHHHHHh
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKEIVKVLDLS-KYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~-~~~v~~T~~~~~a~el~~~~~~~-~~d~IVvvGGDGTl~evvngL~ 187 (302)
+|++||..+.. + +.+...|+..++ .+..+.........++.+.+... +.|.||.+|| |++.++...+.
T Consensus 26 ~r~livtd~~~--------~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGG-Gsv~D~aK~vA 95 (331)
T cd08174 26 GRVAVVSGPGV--------G-EQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGG-GKVIDVAKYAA 95 (331)
T ss_pred CceEEEECCcH--------H-HHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHH
Confidence 68999988765 3 456677777666 44443322233444555544433 5899999998 89999998886
Q ss_pred cCccccccCCccEEEecCCChh
Q 022147 188 EREDWNDAIKVPLGVVPAGTGN 209 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GTgN 209 (302)
.. ..+|+..||.=.++
T Consensus 96 ~~------~~~p~i~vPTt~~t 111 (331)
T cd08174 96 FL------RGIPLSVPTTNLND 111 (331)
T ss_pred hh------cCCCEEEecCcccc
Confidence 64 27899999985544
No 75
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=94.61 E-value=0.057 Score=52.09 Aligned_cols=58 Identities=19% Similarity=0.412 Sum_probs=39.9
Q ss_pred CCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCc-cHHHHHHHHHhCC
Q 022147 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPC-KASNAILAVIRGH 236 (302)
Q Consensus 165 ~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~-~~~~a~~~I~~g~ 236 (302)
+.+|.||++|||||+--+..-.-+. -+|+--+..|| =+|-..+ +. +..+.+..++.|+
T Consensus 167 ~~~D~iItLGGDGTvL~aS~LFq~~-------VPPV~sFslGs-lGFLtpf------~f~~f~~~l~~v~~~~ 225 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASSLFQRS-------VPPVLSFSLGS-LGFLTPF------PFANFQEQLARVLNGR 225 (409)
T ss_pred cceeEEEEecCCccEEEehhhhcCC-------CCCeEEeecCC-ccccccc------cHHHHHHHHHHHhcCc
Confidence 4689999999999998776654332 57888888886 3332222 21 3456777888776
No 76
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=94.60 E-value=0.36 Score=47.12 Aligned_cols=100 Identities=20% Similarity=0.337 Sum_probs=59.3
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCc--chHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~--~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.++++|+..+..-+ ...+ +++...|+++|+++.++. +..+ ....+.++.+...++|.||.+|| |..-++..
T Consensus 49 ~~~~lvv~~~~~~~---~g~~-~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGG-GS~iD~AK 123 (395)
T PRK15454 49 LKHLFVMADSFLHQ---AGMT-AGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGG-GSVLDAAK 123 (395)
T ss_pred CCEEEEEcCcchhh---CccH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHH
Confidence 36777765543221 2234 578999999999887652 2122 33455666666678999999998 55555544
Q ss_pred HH---hcCcc--c-------cccCCccEEEecC--CChhhHHH
Q 022147 185 GL---LERED--W-------NDAIKVPLGVVPA--GTGNGMIK 213 (302)
Q Consensus 185 gL---~~~~~--~-------~~~~~~plgiIP~--GTgN~~A~ 213 (302)
.+ +..++ + .....+|+..||. |||--+..
T Consensus 124 aia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~ 166 (395)
T PRK15454 124 AVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTN 166 (395)
T ss_pred HHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCC
Confidence 43 22221 0 0113579999997 56544433
No 77
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=94.58 E-value=0.19 Score=48.92 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=47.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.+|++||.-+...+ ...+ +.+...|+.+|+++.++.- .......+.++.+...++|.||.+|| |++.++..
T Consensus 21 ~~k~liVtd~~~~~---~g~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK 95 (398)
T cd08178 21 KKRAFIVTDRFMVK---LGYV-DKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG-GSPMDAAK 95 (398)
T ss_pred CCeEEEEcChhHHh---CccH-HHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHH
Confidence 37888887543211 1133 6788999999988765431 22234456666666678999999999 56666655
Q ss_pred HH
Q 022147 185 GL 186 (302)
Q Consensus 185 gL 186 (302)
.+
T Consensus 96 ~i 97 (398)
T cd08178 96 IM 97 (398)
T ss_pred HH
Confidence 54
No 78
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=94.39 E-value=0.4 Score=46.11 Aligned_cols=93 Identities=18% Similarity=0.271 Sum_probs=59.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+..+.+-+ . ..+ +.+...|+..++++.++.. ...+...++++.+...+.|.||.+|| |++.++...
T Consensus 24 ~~~lvv~~~~~~~-~--~~~-~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVK-T--GVL-DKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhh-C--ccH-HHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6889998876654 1 123 5788889988887765431 23334556666666678999999998 666676655
Q ss_pred Hhc---Ccc---------ccccCCccEEEecCCC
Q 022147 186 LLE---RED---------WNDAIKVPLGVVPAGT 207 (302)
Q Consensus 186 L~~---~~~---------~~~~~~~plgiIP~GT 207 (302)
+.. .+. ......+|+..||.=.
T Consensus 99 va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 99 IALLATNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred HHHHHhCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 521 110 0011368999999843
No 79
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=94.34 E-value=0.4 Score=45.66 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=56.3
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe------CCcchHHHHHHHhhcC---CCceEEEEcCCchH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLS---KYDGIVCVSGDGIL 179 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T------~~~~~a~el~~~~~~~---~~d~IVvvGGDGTl 179 (302)
.+|++|+.++..-+ . +.+.+.+.|+..|+.+.++.- .+.+...++++.+... +.|.||.+|| |++
T Consensus 20 ~~~~livtd~~~~~----~-~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 93 (344)
T TIGR01357 20 PSKLVIITDETVAD----L-YADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVV 93 (344)
T ss_pred CCeEEEEECCchHH----H-HHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHH
Confidence 37899998765432 2 346889999998887643221 1223445555555433 3589999987 788
Q ss_pred HHHHHHHhcCccccccCCccEEEecC
Q 022147 180 VEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
.++...+.... ...+|+..||.
T Consensus 94 ~D~aK~iA~~~----~~~~p~i~VPT 115 (344)
T TIGR01357 94 GDLAGFVAATY----MRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHH----ccCCCEEEecC
Confidence 88877774211 02689999997
No 80
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=94.28 E-value=0.45 Score=45.54 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=57.9
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHh-cCCcEEEEE----eCCcchHHHHHHHhh---cCCCceEEEEcCCchHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQE----TTQQLHAKEIVKVLD---LSKYDGIVCVSGDGILV 180 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~-ag~~~~v~~----T~~~~~a~el~~~~~---~~~~d~IVvvGGDGTl~ 180 (302)
.++++|+..+.-.+ .+.+.+...|+. .++.+.++. ..+.+...++.+.+. ..+.|.||.+|| |++.
T Consensus 23 ~~k~livtd~~v~~-----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 47889988764432 344688888877 666665543 123334445555554 345899999986 7888
Q ss_pred HHHHHHhcCccccccCCccEEEecC--CChhh
Q 022147 181 EVVNGLLEREDWNDAIKVPLGVVPA--GTGNG 210 (302)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiIP~--GTgN~ 210 (302)
++...+...- ...+|+..||. ++++|
T Consensus 97 D~ak~vA~~~----~rgip~i~VPTTlla~~d 124 (344)
T cd08169 97 DVAGFVASTL----FRGIAFIRVPTTLLAQSD 124 (344)
T ss_pred HHHHHHHHHh----ccCCcEEEecCCcccccc
Confidence 8877664310 02689999998 44444
No 81
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=94.28 E-value=0.51 Score=45.55 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=59.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC-Cc--chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~-~~--~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+|++|+..+.+. .+ +.+...|+.+++++.++... .+ +...+.++.+...++|.||.+|| |++.++...+
T Consensus 23 ~r~livtd~~~~------~~-~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~i 94 (374)
T cd08183 23 RRVLLVTGASSL------RA-AWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGKAI 94 (374)
T ss_pred CcEEEEECCchH------HH-HHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHHHH
Confidence 789999877553 33 57888999999988765322 11 22345555555678999999998 6777766554
Q ss_pred h---cCcc-------------ccccCCccEEEecC--CChhhH
Q 022147 187 L---ERED-------------WNDAIKVPLGVVPA--GTGNGM 211 (302)
Q Consensus 187 ~---~~~~-------------~~~~~~~plgiIP~--GTgN~~ 211 (302)
. ..+. ......+|+..||. |||--+
T Consensus 95 a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~ 137 (374)
T cd08183 95 AALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEV 137 (374)
T ss_pred HHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHh
Confidence 2 1110 00113589999997 454433
No 82
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=94.14 E-value=0.57 Score=45.22 Aligned_cols=95 Identities=24% Similarity=0.352 Sum_probs=59.0
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE----eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~----T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+.-+.-.+ ...+ +.+...|+.+++++.++. ....+...+.++.+...++|.||.+|| |++.++...
T Consensus 27 ~~~livt~~~~~~---~~~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-Gs~iD~aK~ 101 (376)
T cd08193 27 KRVLVVTDPGILK---AGLI-DPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG-GSSMDVAKL 101 (376)
T ss_pred CeEEEEcCcchhh---CccH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6788887653211 1234 578889999998776542 122333456666666678999999998 777777665
Q ss_pred Hhc---Cc---------cccccCCccEEEecCCChh
Q 022147 186 LLE---RE---------DWNDAIKVPLGVVPAGTGN 209 (302)
Q Consensus 186 L~~---~~---------~~~~~~~~plgiIP~GTgN 209 (302)
+.. .+ .......+|+..||.=.|+
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagt 137 (376)
T cd08193 102 VAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGT 137 (376)
T ss_pred HHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcc
Confidence 532 11 0001136899999984433
No 83
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=94.14 E-value=0.58 Score=45.06 Aligned_cols=94 Identities=20% Similarity=0.324 Sum_probs=58.2
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--C--CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--T--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~--~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+..+..-+ ...+ +++...|+.+|+++.++.. . ..+...+.++.+...+.|.||.+|| |++.++...
T Consensus 25 ~~~liv~~~~~~~---~~~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GSviD~aK~ 99 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLV-ARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG-GSALDLAKA 99 (370)
T ss_pred CeEEEEcCcchhh---CccH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6888887765422 1134 5788999999988765521 1 1123445555565678999999998 777777665
Q ss_pred HhcC---cc-----------c--cccCCccEEEecCCCh
Q 022147 186 LLER---ED-----------W--NDAIKVPLGVVPAGTG 208 (302)
Q Consensus 186 L~~~---~~-----------~--~~~~~~plgiIP~GTg 208 (302)
+.-. +. + .....+|+..||.=.|
T Consensus 100 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 138 (370)
T cd08192 100 VALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAG 138 (370)
T ss_pred HHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCc
Confidence 5321 10 0 0012489999998443
No 84
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=94.09 E-value=0.95 Score=43.99 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=75.7
Q ss_pred eEEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc----hHH
Q 022147 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL----HAK 156 (302)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~----~a~ 156 (302)
.+.|...+.+....++.. ..-+|.+|+.-|.-- +. ..+ +.+...|+..++++.++.--.++ ...
T Consensus 9 ~i~fG~g~l~~l~~~~~~--------~g~~r~liVTd~~~~--~~-g~~-~~v~~~L~~~~i~~~if~~v~p~P~~~~v~ 76 (377)
T COG1454 9 EILFGRGSLKELGEEVKR--------LGAKRALIVTDRGLA--KL-GLL-DKVLDSLDAAGIEYEVFDEVEPEPTIETVE 76 (377)
T ss_pred eEEecCChHHHHHHHHHh--------cCCCceEEEECCccc--cc-hhH-HHHHHHHHhcCCeEEEecCCCCCCCHHHHH
Confidence 445555555555544432 134788999888522 22 233 68999999999888776543332 233
Q ss_pred HHHHHhhcCCCceEEEEcCCchHHHHHHHH---hcCcc---------ccccCCccEEEecC--CChhhHHHhh
Q 022147 157 EIVKVLDLSKYDGIVCVSGDGILVEVVNGL---LERED---------WNDAIKVPLGVVPA--GTGNGMIKSL 215 (302)
Q Consensus 157 el~~~~~~~~~d~IVvvGGDGTl~evvngL---~~~~~---------~~~~~~~plgiIP~--GTgN~~A~sL 215 (302)
+.++.+...++|.||.+|| |+..++...+ ...++ .....+.|+..||. |||--..+.-
T Consensus 77 ~~~~~~~~~~~D~iIalGG-GS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~a 148 (377)
T COG1454 77 AGAEVAREFGPDTIIALGG-GSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPFA 148 (377)
T ss_pred HHHHHHHhcCCCEEEEeCC-ccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCeE
Confidence 4445566678999999999 6766766655 33221 00123489999996 7877766654
No 85
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=94.01 E-value=0.69 Score=43.66 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=60.4
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.+|++|+..+..-+ ..+ +.+...|+.+ +++.++.- ...++..++++.+...+.|.||.+|| |++.++..
T Consensus 23 ~~~~liv~~~~~~~----~~~-~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~~D~aK 95 (332)
T cd07766 23 FDRALVVSDEGVVK----GVG-EKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGG-GSTLDTAK 95 (332)
T ss_pred CCeEEEEeCCchhh----hHH-HHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-chHHHHHH
Confidence 46899998765543 223 6788888877 76655431 23334556666666678999999987 88888887
Q ss_pred HHhcCccccccCCccEEEecCCChh
Q 022147 185 GLLEREDWNDAIKVPLGVVPAGTGN 209 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~GTgN 209 (302)
.+...-. ..+|+..||.=.+.
T Consensus 96 ~ia~~~~----~~~p~i~iPTt~~t 116 (332)
T cd07766 96 AVAALLN----RGLPIIIVPTTAAT 116 (332)
T ss_pred HHHHHhc----CCCCEEEEeCCCch
Confidence 7644311 26899999984433
No 86
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=93.96 E-value=0.83 Score=43.85 Aligned_cols=94 Identities=18% Similarity=0.191 Sum_probs=52.2
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCc--chHHHHHHHhhcC---CCceEEEEcCCchHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLS---KYDGIVCVSGDGILVEV 182 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~--~~a~el~~~~~~~---~~d~IVvvGGDGTl~ev 182 (302)
++++|+..|..-+ +.+...|+.+++++.++. ...+ ++..+.++.+... ++|.||.+|| |..-++
T Consensus 26 ~~~lvvtd~~~~~--------~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGG-GS~iD~ 96 (347)
T cd08184 26 DPAVFFVDDVFQG--------KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGG-GSTLDV 96 (347)
T ss_pred CeEEEEECcchhh--------hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCC-cHHHHH
Confidence 4566666433211 345566888888876652 1122 2234444444434 7999999998 566666
Q ss_pred HHHH---hcCcc-------c--cccCCccEEEecC--CChhhHH
Q 022147 183 VNGL---LERED-------W--NDAIKVPLGVVPA--GTGNGMI 212 (302)
Q Consensus 183 vngL---~~~~~-------~--~~~~~~plgiIP~--GTgN~~A 212 (302)
...+ +..+. + .....+|+..||. |||--..
T Consensus 97 AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t 140 (347)
T cd08184 97 AKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEAS 140 (347)
T ss_pred HHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccC
Confidence 5554 22211 0 0112478999996 6654443
No 87
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=93.81 E-value=0.91 Score=43.32 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=58.1
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe------CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T------~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
+|++|+..+..- ... .+++...|+..++++.++.- ...+...++++.+.. +.|.||.+|| |++.++.
T Consensus 24 ~~~livtd~~~~----~~~-~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGG-Gs~~D~a 96 (348)
T cd08175 24 KKALIVADENTY----AAA-GKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGS-GTINDIT 96 (348)
T ss_pred CcEEEEECCcHH----HHH-HHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECC-cHHHHHH
Confidence 678888765332 212 36888999999987765432 222334455555544 8999999998 8888888
Q ss_pred HHHhcCccccccCCccEEEecCCC
Q 022147 184 NGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP~GT 207 (302)
..+... ..+|+..||.=+
T Consensus 97 K~vA~~------~~~p~i~IPTTa 114 (348)
T cd08175 97 KYVSYK------TGIPYISVPTAP 114 (348)
T ss_pred HHHHHh------cCCCEEEecCcc
Confidence 888644 268999999743
No 88
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=93.55 E-value=1.2 Score=42.85 Aligned_cols=90 Identities=17% Similarity=0.265 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC--C--cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--Q--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~--~--~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++||..+.+- +.+.+...|+.+++++.++.-- + .+...++++.+...++|.||.+|| |++.++...
T Consensus 24 ~~~livtd~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~~D~aK~ 95 (367)
T cd08182 24 KRVLLVTGPRSA-------IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGG-GSVLDTAKA 95 (367)
T ss_pred CeEEEEeCchHH-------HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHHHH
Confidence 688888665442 2246777888888776654221 1 223445555555568999999998 777777665
Q ss_pred Hhc---Cc-------------cccccCCccEEEecCCC
Q 022147 186 LLE---RE-------------DWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 186 L~~---~~-------------~~~~~~~~plgiIP~GT 207 (302)
+.. .+ .......+|+..||.=.
T Consensus 96 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 96 LAALLGAPREALEDLRIRNKERENRERALPLIAIPTTA 133 (367)
T ss_pred HHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence 532 11 00112368999999843
No 89
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=93.48 E-value=0.54 Score=44.62 Aligned_cols=93 Identities=22% Similarity=0.318 Sum_probs=57.1
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--C--CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--T--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~--~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.+|++||..+...+. ..+ +.+...|+.. +.+.++.- . ..+...+.++.+...++|.||.+|| |++.++..
T Consensus 22 ~~~~lvv~~~~~~~~---g~~-~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~aK 95 (332)
T cd08180 22 NKRVLIVTDPFMVKS---GML-DKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGG-GSAIDAAK 95 (332)
T ss_pred CCeEEEEeCchhhhC---ccH-HHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECC-chHHHHHH
Confidence 378999988744321 123 5778888876 66654421 1 1233345555555678999999998 66667766
Q ss_pred HH---hcCccccccCCccEEEecC--CChh
Q 022147 185 GL---LEREDWNDAIKVPLGVVPA--GTGN 209 (302)
Q Consensus 185 gL---~~~~~~~~~~~~plgiIP~--GTgN 209 (302)
.+ .... .....+|+..||. |||-
T Consensus 96 a~a~~~~~~--~~~~~~p~i~VPTtagtgs 123 (332)
T cd08180 96 AIIYFAKKL--GKKKKPLFIAIPTTSGTGS 123 (332)
T ss_pred HHHHHHhCC--CCCCCCCEEEeCCCCcchH
Confidence 54 2211 0123589999997 5553
No 90
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=93.36 E-value=1.1 Score=43.96 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=45.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe---C-CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---T-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T---~-~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+.-+..-+ . ..+ +++...|+.+|+++.++.- + ..+...+.++.+...+.|.||.+|| |++.++...
T Consensus 24 ~~vlivt~~~~~~-~--g~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~AKa 98 (414)
T cd08190 24 RRVCLVTDPNLAQ-L--PPV-KVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGG-GSVIDTAKA 98 (414)
T ss_pred CeEEEEECcchhh-c--chH-HHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 6888888765332 1 123 5788889999998876531 1 1223445555555678999999999 555555443
No 91
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=93.10 E-value=0.94 Score=43.74 Aligned_cols=94 Identities=22% Similarity=0.328 Sum_probs=57.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+..+..-+ . ..+ +.+...|+.+|+++.++.- ...+...+.++.+...+.|.||.+|| |++.++...
T Consensus 27 ~~~lvvt~~~~~~-~--g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GS~~D~aK~ 101 (374)
T cd08189 27 KKVLIVTDKGLVK-L--GLL-DKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG-GSVIDCAKA 101 (374)
T ss_pred CeEEEEeCcchhh-c--ccH-HHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 6889988765432 1 134 5788899999988765521 11222345555555578999999998 666666654
Q ss_pred H---hcCcc----------ccccCCccEEEecC--CCh
Q 022147 186 L---LERED----------WNDAIKVPLGVVPA--GTG 208 (302)
Q Consensus 186 L---~~~~~----------~~~~~~~plgiIP~--GTg 208 (302)
+ +.++. ......+|+..||. |||
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTG 139 (374)
T cd08189 102 IAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTG 139 (374)
T ss_pred HHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccc
Confidence 4 22211 00112479999997 454
No 92
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=93.06 E-value=0.29 Score=47.00 Aligned_cols=94 Identities=21% Similarity=0.319 Sum_probs=59.3
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eC--CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~--~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
|++||.+| +-... ..+ +.+...|++.++++.++. .. ...+..++++.+...++|.||.+|| |++.++...+
T Consensus 23 r~lvVt~~-~~~~~--~~~-~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~v 97 (366)
T PF00465_consen 23 RVLVVTDP-SLSKS--GLV-DRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGG-GSVMDAAKAV 97 (366)
T ss_dssp EEEEEEEH-HHHHH--THH-HHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEES-HHHHHHHHHH
T ss_pred CEEEEECc-hHHhC--ccH-HHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCC-CCcCcHHHHH
Confidence 89999988 33222 234 688899999999886665 22 2233456666666678999999998 5555544444
Q ss_pred ---hcCccc----------cccCCccEEEecCCChh
Q 022147 187 ---LEREDW----------NDAIKVPLGVVPAGTGN 209 (302)
Q Consensus 187 ---~~~~~~----------~~~~~~plgiIP~GTgN 209 (302)
+..+.. .....+|+..||.-.|+
T Consensus 98 a~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gt 133 (366)
T PF00465_consen 98 ALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGT 133 (366)
T ss_dssp HHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSS
T ss_pred HhhccCCCcHHHHHhhccccccCCCcEEEeeCCccc
Confidence 443211 01123899999984444
No 93
>PLN02834 3-dehydroquinate synthase
Probab=92.69 E-value=1.3 Score=43.85 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=56.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE---Ee-----CCcchHHHHHHHhhcCCC---ceEEEEcCCc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ---ET-----TQQLHAKEIVKVLDLSKY---DGIVCVSGDG 177 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~---~T-----~~~~~a~el~~~~~~~~~---d~IVvvGGDG 177 (302)
.+|++||.++...+ .+.+.+...|+.+|+++.++ .. .+.+...++++.+...+. |.||++|| |
T Consensus 100 g~rvlIVtD~~v~~-----~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-G 173 (433)
T PLN02834 100 GKRVLVVTNETVAP-----LYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-G 173 (433)
T ss_pred CCEEEEEECccHHH-----HHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-h
Confidence 47899999875432 25578899999999876552 11 233334455555544444 48888887 7
Q ss_pred hHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 178 ILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 178 Tl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
++.++...+.... ...+|+..||.-
T Consensus 174 sv~D~ak~~A~~y----~rgiplI~VPTT 198 (433)
T PLN02834 174 VIGDMCGFAAASY----QRGVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHHHHh----cCCCCEEEECCc
Confidence 8888887553110 026899999994
No 94
>PRK15138 aldehyde reductase; Provisional
Probab=91.08 E-value=1.9 Score=41.91 Aligned_cols=96 Identities=20% Similarity=0.259 Sum_probs=53.9
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--e--CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++|+.-+.+=+. ...+ +++...|. ++++.++. . ...+...+.++.+...+.|.||.+|| |.+-++...
T Consensus 30 ~~~livt~~~~~~~--~g~~-~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK~ 103 (387)
T PRK15138 30 ARVLITYGGGSVKK--TGVL-DQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGG-GSVLDGTKF 103 (387)
T ss_pred CeEEEECCCchHHh--cCcH-HHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHH
Confidence 68888865543222 2233 46777775 66665542 1 12224445555555578999999999 555555544
Q ss_pred Hh---cCcc----c--------cccCCccEEEecC--CChhhH
Q 022147 186 LL---ERED----W--------NDAIKVPLGVVPA--GTGNGM 211 (302)
Q Consensus 186 L~---~~~~----~--------~~~~~~plgiIP~--GTgN~~ 211 (302)
+. ..+. + .....+|+..||. |||--.
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~ 146 (387)
T PRK15138 104 IAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSES 146 (387)
T ss_pred HHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCcccccc
Confidence 42 1110 0 0112579999997 665433
No 95
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=90.40 E-value=2.3 Score=41.79 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=67.5
Q ss_pred HHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHh----hc--------
Q 022147 97 EKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL----DL-------- 164 (302)
Q Consensus 97 ~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~----~~-------- 164 (302)
+.|...|.+-..-..-.+++|+.--.|. .+..+|+..... ++.|.+..+.+.+...+ ..
T Consensus 3 dQL~~il~sd~~lPe~i~Lvn~sd~qgq-------~l~~~l~~~~~p--vv~t~s~advqa~fs~iv~rIQk~Cn~ns~~ 73 (414)
T PF10254_consen 3 DQLNHILISDDQLPENIILVNTSDWQGQ-------FLSDLLQEHMLP--VVCTCSTADVQAAFSAIVSRIQKFCNCNSSP 73 (414)
T ss_pred hhhhhhhccCCCCCceEEEEecCccchh-------HHHHHHhhcCCC--eEecCCHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 3444444332233345778887543332 245667765443 55667777766543332 21
Q ss_pred CCCceEEEEcCCchHHHHHHHHhcC-----ccccccCCccEEEecCCChhhHHHhhh
Q 022147 165 SKYDGIVCVSGDGILVEVVNGLLER-----EDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 165 ~~~d~IVvvGGDGTl~evvngL~~~-----~~~~~~~~~plgiIP~GTgN~~A~sL~ 216 (302)
..+--|+++|||--++.|+....+. +||. .-+.+-+||.|+ |.+|+.|+
T Consensus 74 p~~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl--~~~rFlvIPlGs-~~varyLg 127 (414)
T PF10254_consen 74 PPPVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWL--NYLRFLVIPLGS-HPVARYLG 127 (414)
T ss_pred CCceEEEEEccHHHHHHHHHHHHHHhccCCcccc--cceeEEEecCCC-CHHHHHHh
Confidence 1244599999999999998877543 4442 257789999999 99999985
No 96
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=90.33 E-value=2.2 Score=41.21 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=68.1
Q ss_pred hhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC--CcchHHHHHHHhhcCCCceEEEEcCCch
Q 022147 101 DFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 101 ~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~--~~~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
+.+..... ++.+|+.-+. ..+++.+.+.+.|...|+.+...... +.++..++++.+...++|.||-+|| |.
T Consensus 23 ~~~~~~~~-~~~lvv~g~~-----~~~~~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGG-Gk 95 (360)
T COG0371 23 EVLLKLGL-SRALVVTGEN-----TYAIAGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGG-GK 95 (360)
T ss_pred HHHHhccC-CceEEEEChh-----HHHHHHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcccCCCEEEEecC-cH
Confidence 33433334 6778877543 34456678999999998744443332 2334445555554467899999998 89
Q ss_pred HHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 179 LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 179 l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
+.++...+..+ .++|+..+|.=-.+|=..|
T Consensus 96 ~iD~aK~~A~~------~~~pfIsvPT~AS~Da~~S 125 (360)
T COG0371 96 TIDTAKAAAYR------LGLPFISVPTIASTDAITS 125 (360)
T ss_pred HHHHHHHHHHH------cCCCEEEecCccccccccC
Confidence 99999998776 3899999998665554443
No 97
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=90.19 E-value=1.2 Score=42.37 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=52.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcE-EEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQF-TVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~-~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
+|++|+..+.. .+. +.+.+...|+..++.+ .-...+. .+...++++.+...++|.||.+|| |++.++...+.
T Consensus 24 ~~~livt~~~~----~~~-~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~iD~aK~ia 97 (337)
T cd08177 24 SRALVLTTPSL----ATK-LAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGG-GSTIDLAKAIA 97 (337)
T ss_pred CeEEEEcChHH----HHH-HHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHH
Confidence 57888865432 222 3467888887764321 1111111 222344555555568999999997 89999988876
Q ss_pred cCccccccCCccEEEecC
Q 022147 188 EREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (302)
.. ..+|+..||.
T Consensus 98 ~~------~~~p~i~IPT 109 (337)
T cd08177 98 LR------TGLPIIAIPT 109 (337)
T ss_pred HH------hcCCEEEEcC
Confidence 43 1689999995
No 98
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=90.00 E-value=2.9 Score=42.56 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=51.1
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc------hHHHHHHHhhc---CCCceEEEEcCCchHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL------HAKEIVKVLDL---SKYDGIVCVSGDGILV 180 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~------~a~el~~~~~~---~~~d~IVvvGGDGTl~ 180 (302)
.+.++|+.+.. .. +.+.+...|..+|+.+.......++ ...++.+.+.. .+.|.||.+|| |++.
T Consensus 210 ~k~~iV~d~~v-----~~-~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGG-Gsv~ 282 (542)
T PRK14021 210 VKVALIHTQPV-----QR-HSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGG-GAAT 282 (542)
T ss_pred CeEEEEECccH-----HH-HHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcC-hHHH
Confidence 46666665432 11 3467888888888765433333332 22333343332 25888888887 8888
Q ss_pred HHHHHHhcCccccccCCccEEEecC
Q 022147 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
++...+...- ...+|+..+|.
T Consensus 283 D~AKfvA~~y----~rGi~~i~vPT 303 (542)
T PRK14021 283 DLAGFVAATW----MRGIRYVNCPT 303 (542)
T ss_pred HHHHHHHHHH----HcCCCEEEeCC
Confidence 8887775310 02788888887
No 99
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=89.84 E-value=2 Score=46.18 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=48.1
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHH--hcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEcCCchHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLE--DANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~--~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev 182 (302)
.+|++|+..+..-+ . ..+ +.+...|+ ..++++.++.- ...+...++++.+...+.|.||.+|| |++.++
T Consensus 480 ~~~~lvVtd~~~~~-~--g~~-~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~ 554 (862)
T PRK13805 480 KKRAFIVTDRFMVE-L--GYV-DKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGG-GSPMDA 554 (862)
T ss_pred CCEEEEEECcchhh-c--chH-HHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 47889988765422 1 133 57888888 77777765532 22234556666666678999999998 666676
Q ss_pred HHHH
Q 022147 183 VNGL 186 (302)
Q Consensus 183 vngL 186 (302)
...+
T Consensus 555 AK~i 558 (862)
T PRK13805 555 AKIM 558 (862)
T ss_pred HHHH
Confidence 6555
No 100
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=89.68 E-value=2.5 Score=41.29 Aligned_cols=90 Identities=9% Similarity=0.194 Sum_probs=55.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE----------EeCCc-chHHHHHHHhhcCC---CceEEEEc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ----------ETTQQ-LHAKEIVKVLDLSK---YDGIVCVS 174 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~----------~T~~~-~~a~el~~~~~~~~---~d~IVvvG 174 (302)
.+|++||.++.--+-. .... +.+...|..++++++++ ..+.. +...++.+.+...+ .|.||.+|
T Consensus 42 ~~r~liVtD~~v~~~~-~~l~-~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiG 119 (389)
T PRK06203 42 PKKVLVVIDSGVLRAH-PDLL-EQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIG 119 (389)
T ss_pred CCeEEEEECchHHHhh-hhHH-HHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeC
Confidence 5789999987554311 1223 67888998888765431 12222 22445555544434 45999998
Q ss_pred CCchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 175 GDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 175 GDGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
| |++.++...+.... ...+|+..||.
T Consensus 120 G-Gsv~D~ak~iA~~~----~rgip~I~IPT 145 (389)
T PRK06203 120 G-GAVLDMVGYAAATA----HRGVRLIRIPT 145 (389)
T ss_pred C-cHHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 7 88888876664311 12689999996
No 101
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=89.48 E-value=2.1 Score=41.06 Aligned_cols=97 Identities=18% Similarity=0.325 Sum_probs=53.9
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eC--CcchHHHHHHHhhcCC--CceEEEEcCCchHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT--QQLHAKEIVKVLDLSK--YDGIVCVSGDGILVEVV 183 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~--~~~~a~el~~~~~~~~--~d~IVvvGGDGTl~evv 183 (302)
+|++|+..+...+ ...+ +.+...|+.. .+.++. .. ..+...+.++.+...+ .|.||.+|| |++.++.
T Consensus 24 ~r~lvVtd~~~~~---~g~~-~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGG-GSviD~a 96 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLA-RRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGG-GSVIDTA 96 (355)
T ss_pred CeEEEEECcchhh---cchH-HHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHH
Confidence 7899998765422 1233 5677777643 333331 11 1223344444444334 999999998 7777766
Q ss_pred HHH---hcCccc-------------cccCCccEEEecC--CChhhHHH
Q 022147 184 NGL---LEREDW-------------NDAIKVPLGVVPA--GTGNGMIK 213 (302)
Q Consensus 184 ngL---~~~~~~-------------~~~~~~plgiIP~--GTgN~~A~ 213 (302)
..+ +..++. .....+|+..||. |||--...
T Consensus 97 K~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~ 144 (355)
T TIGR03405 97 KVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTP 144 (355)
T ss_pred HHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcC
Confidence 554 222210 0113589999997 66644433
No 102
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=89.25 E-value=3.4 Score=40.12 Aligned_cols=91 Identities=8% Similarity=0.135 Sum_probs=56.6
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE----------EeCCc-chHHHHHHHhhcCC---CceEEEEc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ----------ETTQQ-LHAKEIVKVLDLSK---YDGIVCVS 174 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~----------~T~~~-~~a~el~~~~~~~~---~d~IVvvG 174 (302)
.+|++||.++.-.+-.. .. .+.+...|+.+|+.++++ .+++. ....++.+.+...+ .|.||++|
T Consensus 30 ~~r~lvVtD~~v~~~~~-~~-~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalG 107 (369)
T cd08198 30 RPKVLVVIDSGVAQANP-QL-ASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIG 107 (369)
T ss_pred CCeEEEEECcchHHhhh-hH-HHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEEC
Confidence 47899999986654111 22 367888898888655432 11221 22334555544434 45999999
Q ss_pred CCchHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 175 GDGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 175 GDGTl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
| |.+.++...+...- ...+|+..||.=
T Consensus 108 G-G~v~D~ag~vA~~~----~rGip~I~IPTT 134 (369)
T cd08198 108 G-GAVLDAVGYAAATA----HRGVRLIRIPTT 134 (369)
T ss_pred C-hHHHHHHHHHHHHh----cCCCCEEEECCC
Confidence 8 89999887775321 126899999964
No 103
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=88.96 E-value=6.3 Score=35.15 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCCCCC------chhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHH
Q 022147 109 PKRLYIFVNPFGGKK------IASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (302)
Q Consensus 109 ~~r~~vivNP~sG~~------~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev 182 (302)
.+.+.||+ |..... .....+.+.+...++..|+++.+..+... ...++.+.+...++|+||+.+.+.. ...
T Consensus 3 s~~i~vi~-p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~-~~~~~~~~l~~~~~dgiii~~~~~~-~~~ 79 (275)
T cd06295 3 TDTIALVV-PEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVSSP-DRDWLARYLASGRADGVILIGQHDQ-DPL 79 (275)
T ss_pred ceEEEEEe-cCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCCch-hHHHHHHHHHhCCCCEEEEeCCCCC-hHH
Confidence 45566776 653322 11112224677888888888877766543 3334444454468999999887654 244
Q ss_pred HHHHhcCccccccCCccEEEecC
Q 022147 183 VNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP~ 205 (302)
++.+... ++|+..+..
T Consensus 80 ~~~~~~~-------~ipvV~~~~ 95 (275)
T cd06295 80 PERLAET-------GLPFVVWGR 95 (275)
T ss_pred HHHHHhC-------CCCEEEECC
Confidence 5555443 567766643
No 104
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=88.85 E-value=2.9 Score=35.40 Aligned_cols=73 Identities=25% Similarity=0.270 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCce-EEEEcCCchHHHHHHHHhcCccccccCCccEE
Q 022147 126 SKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGLLEREDWNDAIKVPLG 201 (302)
Q Consensus 126 ~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~-IVvvGGDGTl~evvngL~~~~~~~~~~~~plg 201 (302)
..+. +++...|+..|+.+++.... .+++..++++++...+.+. |.++|+++-|--++-++-.. |+.
T Consensus 13 ~~~~-~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~---------PVI 82 (150)
T PF00731_consen 13 LPIA-EEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTL---------PVI 82 (150)
T ss_dssp HHHH-HHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS----------EE
T ss_pred HHHH-HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCC---------CEE
Confidence 3344 68889999999999987765 5666778888876556664 66789999999999998643 555
Q ss_pred EecCCCh
Q 022147 202 VVPAGTG 208 (302)
Q Consensus 202 iIP~GTg 208 (302)
-+|.-++
T Consensus 83 gvP~~~~ 89 (150)
T PF00731_consen 83 GVPVSSG 89 (150)
T ss_dssp EEEE-ST
T ss_pred EeecCcc
Confidence 5576554
No 105
>PRK06756 flavodoxin; Provisional
Probab=88.33 E-value=3.1 Score=34.40 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=50.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNG 185 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~evvng 185 (302)
+++++||+=. ..|..+++. +.+...|+..|++++++........ .+ ..++|.|+++. |+|.+...+..
T Consensus 1 mmkv~IiY~S--~tGnTe~vA-~~ia~~l~~~g~~v~~~~~~~~~~~----~~--~~~~d~vi~gspt~~~g~~p~~~~~ 71 (148)
T PRK06756 1 MSKLVMIFAS--MSGNTEEMA-DHIAGVIRETENEIEVIDIMDSPEA----SI--LEQYDGIILGAYTWGDGDLPDDFLD 71 (148)
T ss_pred CceEEEEEEC--CCchHHHHH-HHHHHHHhhcCCeEEEeehhccCCH----HH--HhcCCeEEEEeCCCCCCCCcHHHHH
Confidence 3688899844 555666554 6788888888988876654332111 22 34688877664 67766553333
Q ss_pred HhcCccccccCCccEEEecCC
Q 022147 186 LLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~G 206 (302)
++..-........+++++-.|
T Consensus 72 fl~~l~~~~l~~k~~~~fgt~ 92 (148)
T PRK06756 72 FYDAMDSIDLTGKKAAVFGSC 92 (148)
T ss_pred HHHHHhcCCCCCCEEEEEeCC
Confidence 322100011235666665443
No 106
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=88.28 E-value=10 Score=30.95 Aligned_cols=75 Identities=19% Similarity=0.095 Sum_probs=47.3
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC------Ccch---HHHHHHHhhcCCCceEEEEcCCchH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT------QQLH---AKEIVKVLDLSKYDGIVCVSGDGIL 179 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~------~~~~---a~el~~~~~~~~~d~IVvvGGDGTl 179 (302)
.....+..|.... ... +.....|+..|+.+...... ..-+ +.++.+.+....+|.+|+++||+=+
T Consensus 39 ~~~~r~y~~~~~~--~~~----~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df 112 (149)
T cd06167 39 IVLARAYGNWTSP--ERQ----RGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDF 112 (149)
T ss_pred EEEEEEEEecCCc--hhH----HHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCccH
Confidence 3455566665433 122 34567788888876544321 1111 2233444444579999999999999
Q ss_pred HHHHHHHhcC
Q 022147 180 VEVVNGLLER 189 (302)
Q Consensus 180 ~evvngL~~~ 189 (302)
..+++.|.+.
T Consensus 113 ~~~i~~lr~~ 122 (149)
T cd06167 113 VPLVERLREL 122 (149)
T ss_pred HHHHHHHHHc
Confidence 9999999887
No 107
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=88.01 E-value=4.4 Score=35.49 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=52.7
Q ss_pred EEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCchHH-HHHHHHhcC
Q 022147 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILV-EVVNGLLER 189 (302)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGTl~-evvngL~~~ 189 (302)
+.+|+ |.....-...++ +.++..++..|+++.+..+.. +....+..+++...++|+||+++.+.... +.+..+...
T Consensus 2 ig~i~-p~~~~~~~~~~~-~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~~~ 79 (267)
T cd01536 2 IGLVV-PSLNNPFWQAMN-KGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKANAA 79 (267)
T ss_pred EEEEe-ccccCHHHHHHH-HHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHHHHHHHHHHC
Confidence 44555 543222223333 577788888898888877763 34445666766666899999988775432 466666544
Q ss_pred ccccccCCccEEEecC
Q 022147 190 EDWNDAIKVPLGVVPA 205 (302)
Q Consensus 190 ~~~~~~~~~plgiIP~ 205 (302)
++|+..+-.
T Consensus 80 -------~ip~V~~~~ 88 (267)
T cd01536 80 -------GIPVVTVDS 88 (267)
T ss_pred -------CCcEEEecC
Confidence 566655543
No 108
>PRK06703 flavodoxin; Provisional
Probab=87.94 E-value=3.4 Score=34.24 Aligned_cols=85 Identities=25% Similarity=0.221 Sum_probs=50.7
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHHH----
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVE---- 181 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~e---- 181 (302)
+++++|++=. ..|..+++. +.+...|...|++++++....... .. ..++|.|+++. |+|-+..
T Consensus 1 mmkv~IiY~S--~tGnT~~iA-~~ia~~l~~~g~~v~~~~~~~~~~-----~~--l~~~d~viigspt~~~g~~p~~~~~ 70 (151)
T PRK06703 1 MAKILIAYAS--MSGNTEDIA-DLIKVSLDAFDHEVVLQEMDGMDA-----EE--LLAYDGIILGSYTWGDGDLPYEAED 70 (151)
T ss_pred CCeEEEEEEC--CCchHHHHH-HHHHHHHHhcCCceEEEehhhCCH-----HH--HhcCCcEEEEECCCCCCcCcHHHHH
Confidence 3578888854 556666554 688888998998887765543221 12 34688888765 6775554
Q ss_pred HHHHHhcCccccccCCccEEEecCCC
Q 022147 182 VVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
+++.|... .....+++++-.|.
T Consensus 71 f~~~l~~~----~l~~k~~~vfg~g~ 92 (151)
T PRK06703 71 FHEDLENI----DLSGKKVAVFGSGD 92 (151)
T ss_pred HHHHHhcC----CCCCCEEEEEccCC
Confidence 33333222 12245777775443
No 109
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=86.93 E-value=34 Score=35.18 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=77.6
Q ss_pred ceeEeeEEecCCChHHHHHHHHHHHhhhhc----cCC-CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe-
Q 022147 76 SVVRKDFVFEPLSEDSKRLWCEKLRDFIDS----FGR-PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET- 149 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~----~~r-~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T- 149 (302)
.|+--.+++...+.+++....+.+.+.+.. ... ..++.||. |+..-..+. ++....|+..|+++++...
T Consensus 372 ~rkmGhV~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~----gs~sd~~~~-~~~~~~l~~~g~~~~~~v~s 446 (577)
T PLN02948 372 QRKMGHITVVGPSAAEVEARLDQLLAEESADPDALPKGTPLVGIIM----GSDSDLPTM-KDAAEILDSFGVPYEVTIVS 446 (577)
T ss_pred CCeeEEEEEecCCHHHHHHHHHHHHhhhccCCCCCCCCCCeEEEEE----CchhhHHHH-HHHHHHHHHcCCCeEEEEEC
Confidence 355667777777766666555555444321 111 23455655 322223344 6788899999999987665
Q ss_pred --CCcchHHHHHHHhhcCCCce-EEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCCh
Q 022147 150 --TQQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 150 --~~~~~a~el~~~~~~~~~d~-IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTg 208 (302)
..+.+..++++++...+.+. |.++|+.+.|--|+.++- ..|+.-+|..++
T Consensus 447 ahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t---------~~pvi~vp~~~~ 499 (577)
T PLN02948 447 AHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMT---------PLPVIGVPVKTS 499 (577)
T ss_pred CccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhcc---------CCCEEEcCCCCC
Confidence 35566677888877666664 566799999998888875 457777788654
No 110
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.67 E-value=5.2 Score=35.57 Aligned_cols=84 Identities=8% Similarity=0.083 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCceEEEEcCCchH-HHHHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGL 186 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~IVvvGGDGTl-~evvngL 186 (302)
|+.|++ |.....--..++ +.++..++..|+.+.+..+. .+....++.+.+...++|+||+++.|-.. .+.+..+
T Consensus 1 ~Igvi~-~~~~~~~~~~~~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~ 78 (273)
T cd06310 1 KIALVP-KGTTSDFWQAVK-AGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEA 78 (273)
T ss_pred CeEEEe-cCCCcHHHHHHH-HHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHH
Confidence 456666 332222223333 57778888889888776542 33344455666666789999999877542 4566666
Q ss_pred hcCccccccCCccEEEe
Q 022147 187 LEREDWNDAIKVPLGVV 203 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiI 203 (302)
... .+|+-.+
T Consensus 79 ~~~-------~ipvV~~ 88 (273)
T cd06310 79 KDA-------GIPVVLI 88 (273)
T ss_pred HHC-------CCCEEEe
Confidence 543 5676665
No 111
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=85.48 E-value=2.6 Score=39.69 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=40.6
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+-.++++.+...+.|.+|++|||||+..+ +.|.+. .++|+..||.=--||+.-
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a-~~L~e~------~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGA-QKLYEE------GGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHH-HHHHHh------hCCCEEeecccccCCCcC
Confidence 34456777777889999999999998665 334331 268999999998999875
No 112
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=85.44 E-value=6.9 Score=34.91 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCcEEEEEeCC--cchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~--~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiI 203 (302)
+.++..+++.|+.+.+..++. +....+..+.+...+.|+||+++.+.+ +.+.++.+.+. ++|+..+
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 88 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAA-------GIPVISF 88 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHC-------CCeEEEe
Confidence 577788888898888877764 333345566666678999999998865 45566666543 5676665
No 113
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=85.39 E-value=8.5 Score=32.94 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=45.7
Q ss_pred HHHHHHHHHHh--cCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEec
Q 022147 129 FLDDVKPLLED--ANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 129 ~~~~v~~~L~~--ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP 204 (302)
+.+.++..+++ .++++.+..+.... ...+.++++...++|+|+..+.+.+...++..+... ++|+-.+-
T Consensus 18 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~-------~ip~v~~~ 89 (269)
T cd01391 18 LLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAAAA-------GIPVVSLD 89 (269)
T ss_pred HHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHc-------CCcEEEec
Confidence 33566777777 67777666665433 455666777667899999999888776655555443 56665443
No 114
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=85.34 E-value=1.7 Score=41.31 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=41.1
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+-.++++.+...+.|.+|++|||||+..+ +.|.+. .+|+..||.=--||+..
T Consensus 82 ~~~~~~~~l~~~~Id~LivIGGdgS~~~a-~~L~~~-------gi~vigiPkTIDNDl~g 133 (324)
T TIGR02483 82 GDDKIVANLKELGLDALIAIGGDGTLGIA-RRLADK-------GLPVVGVPKTIDNDLEA 133 (324)
T ss_pred HHHHHHHHHHHcCCCEEEEECCchHHHHH-HHHHhc-------CCCEEeeccccCCCCcC
Confidence 44567777777889999999999998654 456543 58999999988899874
No 115
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=84.73 E-value=5 Score=35.94 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=30.5
Q ss_pred HhhcCCCceEEEEcCCch-------------------HHHHHHHHhcCccccccCCccEEEecCCChhhHHHhh
Q 022147 161 VLDLSKYDGIVCVSGDGI-------------------LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 161 ~~~~~~~d~IVvvGGDGT-------------------l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
+++.++||+|++-||-|. +.+++..+.+. ..|++.|=.|. -.++..+
T Consensus 80 ~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~-------gK~vaAIChgp-~iL~~~~ 145 (217)
T PRK11780 80 EADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQA-------GKPIGFICIAP-AMLPKIL 145 (217)
T ss_pred HCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHC-------CCEEEEECHHH-HHHHHHh
Confidence 344568999999999885 33333333333 56999997777 3445544
No 116
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=84.59 E-value=3.2 Score=39.43 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=58.7
Q ss_pred cEEEEEEcCCCCCCch--hhhHHHHHHHHHHhcCCcEEEEEeCC------cchHHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a--~~~~~~~v~~~L~~ag~~~~v~~T~~------~~~a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
.+++-+.|-..|=-+. ..+-...+..++..-|- +.-|.+ +++-.++++.+...+.|.++++|||||+.-
T Consensus 31 ~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt---~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~ 107 (317)
T cd00763 31 LEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGT---FLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMG 107 (317)
T ss_pred CEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCe---eeccCCCCccCCHHHHHHHHHHHHHcCCCEEEEECCchHHHH
Confidence 3677777766553221 11112345555544442 222322 234456677787789999999999999876
Q ss_pred HHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 182 VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+. .|.+. .+|+..||.=--||+.-
T Consensus 108 a~-~L~e~-------~i~vigiPkTIDNDi~g 131 (317)
T cd00763 108 AM-RLTEH-------GFPCVGLPGTIDNDIPG 131 (317)
T ss_pred HH-HHHHc-------CCCEEEecccccCCCCC
Confidence 64 45443 68999999988898874
No 117
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=84.39 E-value=8.4 Score=34.15 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCc-hHHHHHHHHhcC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLER 189 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDG-Tl~evvngL~~~ 189 (302)
+.+...+++.|+.+.+..+....+ ..+..+.+...++|+||+..+|. +..++++.+.+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~ 79 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDA 79 (273)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHc
Confidence 567777888888777665543222 22444555456789888887764 355666666544
No 118
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=84.28 E-value=10 Score=32.86 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
+.+.++..++..|+++.+..+... +...+.++++...++|+||+.+.+......+..+... ++|+..+....
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~~~-------~ip~v~~~~~~ 89 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKA-------GIPVVLVDRDI 89 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchhHHHHhhhc-------CCCEEEeccCC
Confidence 346777788888888877766542 2345566666666899999988886654445555443 67877776654
Q ss_pred h
Q 022147 208 G 208 (302)
Q Consensus 208 g 208 (302)
.
T Consensus 90 ~ 90 (264)
T cd01537 90 P 90 (264)
T ss_pred C
Confidence 4
No 119
>PRK03202 6-phosphofructokinase; Provisional
Probab=83.82 E-value=3.1 Score=39.60 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=59.5
Q ss_pred cEEEEEEcCCCCCCch--hhhHHHHHHHHHHhcCCcEEEE---EeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQ---ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a--~~~~~~~v~~~L~~ag~~~~v~---~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
-+++-+.|-.-|=-+. ..+-.+.+..+...-|...--- ..+.++...++++.+...+.|.+|++|||||+.-+.
T Consensus 32 ~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~- 110 (320)
T PRK03202 32 LEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAK- 110 (320)
T ss_pred CeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHH-
Confidence 3666666655543221 1111245666666555322111 111223455677778878999999999999997754
Q ss_pred HHhcCccccccCCccEEEecCCChhhHHH
Q 022147 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.|.+. .+|+..||.=--||+..
T Consensus 111 ~L~e~-------~i~vigiPkTIDNDl~g 132 (320)
T PRK03202 111 RLTEH-------GIPVIGLPGTIDNDIAG 132 (320)
T ss_pred HHHhc-------CCcEEEecccccCCCCC
Confidence 45543 78999999988898874
No 120
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=83.62 E-value=3.4 Score=43.80 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=42.7
Q ss_pred chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 153 ~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
++...+++.+...+.|.++++|||||+.-+. .|.+..+.-....+|+..||.=--||+.-
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~-~L~~~~~~y~~~~i~vVgIPkTIDNDv~g 524 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGGFEAYKGLL-QLREAREQYEEFCIPMVLIPATVSNNVPG 524 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHH-HHHHHHhhCCCCCccEEEecccccCCCCC
Confidence 3455677778778999999999999987664 33321111112479999999988898864
No 121
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=83.61 E-value=9.8 Score=33.97 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=49.7
Q ss_pred EEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCc-hHHHHHHHHhcC
Q 022147 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLER 189 (302)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDG-Tl~evvngL~~~ 189 (302)
+.|++.-.+. .--..++ ..+...+++.|+++.+..+.. .....+..+.+...+.|+|++.+.|- .+.+.++.+...
T Consensus 2 igv~~~~~~~-~~~~~~~-~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~ 79 (282)
T cd06318 2 IGFSQYTLNS-PFFAALT-EAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAA 79 (282)
T ss_pred eeEEeccccC-HHHHHHH-HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHC
Confidence 4566643332 2222233 577888888888776655532 22223455666667899999988763 234566666554
Q ss_pred ccccccCCccEEEec
Q 022147 190 EDWNDAIKVPLGVVP 204 (302)
Q Consensus 190 ~~~~~~~~~plgiIP 204 (302)
.+|+-.+-
T Consensus 80 -------~iPvV~~~ 87 (282)
T cd06318 80 -------GVPVVVVD 87 (282)
T ss_pred -------CCCEEEec
Confidence 56776664
No 122
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=83.52 E-value=12 Score=32.77 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
+.+...++..|+.+.+..+++.. ...+..+.+...++|+||+..++..-.+.++.+..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~ 77 (266)
T cd06282 19 QGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDA 77 (266)
T ss_pred HHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhh
Confidence 45666666666666665554321 12234444444567777776665432344444433
No 123
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=83.45 E-value=20 Score=33.15 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=58.7
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCc-hHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNG 185 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDG-Tl~evvng 185 (302)
.+|+.+|+++.+.-+ ... .+.++..+++.|+++.... .....+....++++...++|.|++. +|+ ....++..
T Consensus 132 ~~~~~~i~~~~~~~g--~~~-~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~~pdaV~~~-~~~~~a~~~~~~ 207 (341)
T cd06341 132 GTRAVALVTALSAAV--SAA-AALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAAGADAIITV-LDAAVCASVLKA 207 (341)
T ss_pred CcEEEEEEeCCcHHH--HHH-HHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhcCCCEEEEe-cChHHHHHHHHH
Confidence 567888876643222 222 3567788888888653322 2223455566677666689988765 566 77788888
Q ss_pred HhcCccccccCCccEEEecCCChhhHHHhh
Q 022147 186 LLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
+.+.. .+.|+-+.-.+..+.+....
T Consensus 208 ~~~~G-----~~~~~~~~~~~~~~~~~~~~ 232 (341)
T cd06341 208 VRAAG-----LTPKVVLSGTCYDPALLAAP 232 (341)
T ss_pred HHHcC-----CCCCEEEecCCCCHHHHHhc
Confidence 87763 35555444344445555443
No 124
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=83.41 E-value=22 Score=30.49 Aligned_cols=104 Identities=13% Similarity=0.217 Sum_probs=60.3
Q ss_pred HHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchH---HHHHHHhhcCCCceEEE
Q 022147 96 CEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA---KEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 96 ~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a---~el~~~~~~~~~d~IVv 172 (302)
.+.|.+.+...++...--+..|..+- ..+.+.|...|++.. .++..-+. .+.++-+-.+.+|.++.
T Consensus 43 ~~~i~~~ls~~G~i~~~R~Y~~a~a~---------~~l~~~l~~~Gf~pv--~~kG~~Dv~laIDame~~~~~~iD~~vL 111 (160)
T TIGR00288 43 LDEIREILSEYGDIKIGKVLLNQYAS---------DKLIEAVVNQGFEPI--IVAGDVDVRMAVEAMELIYNPNIDAVAL 111 (160)
T ss_pred HHHHHHHHHhcCCeEEEEEEechhcc---------HHHHHHHHHCCceEE--EecCcccHHHHHHHHHHhccCCCCEEEE
Confidence 45666666666655433344454331 234567777887643 33332222 23333332368999999
Q ss_pred EcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhh
Q 022147 173 VSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 173 vGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
++|||=+..+++.|.++. ..+-.--.|..|...|-++.
T Consensus 112 vSgD~DF~~Lv~~lre~G-----~~V~v~g~~~~ts~~L~~ac 149 (160)
T TIGR00288 112 VTRDADFLPVINKAKENG-----KETIVIGAEPGFSTALQNSA 149 (160)
T ss_pred EeccHhHHHHHHHHHHCC-----CEEEEEeCCCCChHHHHHhc
Confidence 999999999999998773 12221113556666666553
No 125
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=83.30 E-value=2.8 Score=41.89 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=60.1
Q ss_pred cEEEEEEcCCCCCCch--hhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCchHHHHHH--
Q 022147 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN-- 184 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a--~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn-- 184 (302)
.+++-|.|-..|=-.. ..+-.+.+..+...-| ++.-|.+ ..+..++++.+...+.|.++++|||||+.-+..
T Consensus 120 ~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GG---TiLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ 196 (459)
T PTZ00286 120 KTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGG---TILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIY 196 (459)
T ss_pred cEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCC---ceeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHH
Confidence 4778887766553222 1111234555544444 2233333 334567788888889999999999999875533
Q ss_pred -HHhcCccccccCCccEEEecCCChhhHH
Q 022147 185 -GLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (302)
Q Consensus 185 -gL~~~~~~~~~~~~plgiIP~GTgN~~A 212 (302)
.+.++ ..++++..||.==-||+.
T Consensus 197 ee~~~~-----g~~I~VIGIPKTIDNDI~ 220 (459)
T PTZ00286 197 KELRRR-----KLNISVVGIPKTIDNDIP 220 (459)
T ss_pred HHHHHh-----CCCceEEEeccccCCCCC
Confidence 22223 246899999998889887
No 126
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=83.24 E-value=31 Score=30.28 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=56.5
Q ss_pred CChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC--CcchHHHHHHHhhc
Q 022147 87 LSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDL 164 (302)
Q Consensus 87 ~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~--~~~~a~el~~~~~~ 164 (302)
...+.+....+.+.+ ....+++.++..+.. .+ ... .+.+...++..|+++.....- ...+....++++..
T Consensus 117 ~~~~~~~~~~~~~~~----~~~~~~i~~v~~~~~-~~--~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~ 188 (298)
T cd06268 117 SDAQQAAALADYLAE----KGKVKKVAIIYDDYA-YG--RGL-AAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKA 188 (298)
T ss_pred CcHHHHHHHHHHHHH----hcCCCEEEEEEcCCc-hh--HHH-HHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHh
Confidence 334444444444332 224678888886543 22 222 357778888888765332221 22456666777666
Q ss_pred CCCceEEEEcCCchHHHHHHHHhcC
Q 022147 165 SKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 165 ~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
.+.|.|++.+.......++..+...
T Consensus 189 ~~~~~vi~~~~~~~~~~~~~~~~~~ 213 (298)
T cd06268 189 AGPDAVFLAGYGGDAALFLKQAREA 213 (298)
T ss_pred cCCCEEEEccccchHHHHHHHHHHc
Confidence 6788888877656777788887765
No 127
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=83.20 E-value=14 Score=32.44 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCch
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
+.+...+++.|+.+.+..++...+..+..+++...+.|+||+.+.|-+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~ 66 (266)
T cd06278 19 EALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTLS 66 (266)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 355556666666655554443323334444444456666666665543
No 128
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=83.03 E-value=8.5 Score=34.93 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 93 RLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 93 ~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
..|...+.+.+. +.+|+++| |.|+......-|.+..+..|+..|+++....+ .++ ..+.+ ...|+|++
T Consensus 18 ~~~~~~~~~~~~---~~~~v~fI--PtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~--~~d---~~~~l--~~ad~I~v 85 (233)
T PRK05282 18 EHALPLIAELLA---GRRKAVFI--PYAGVTQSWDDYTAKVAEALAPLGIEVTGIHR--VAD---PVAAI--ENAEAIFV 85 (233)
T ss_pred HHHHHHHHHHHc---CCCeEEEE--CCCCCCCCHHHHHHHHHHHHHHCCCEEEEecc--chh---hHHHH--hcCCEEEE
Confidence 445555556654 44555555 55554333233456788999999987654433 222 22333 36789999
Q ss_pred EcCCch
Q 022147 173 VSGDGI 178 (302)
Q Consensus 173 vGGDGT 178 (302)
-|||=+
T Consensus 86 ~GGnt~ 91 (233)
T PRK05282 86 GGGNTF 91 (233)
T ss_pred CCccHH
Confidence 999754
No 129
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=82.86 E-value=7.9 Score=35.78 Aligned_cols=91 Identities=11% Similarity=0.199 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCce
Q 022147 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~ 169 (302)
.....+.+.+++.+ +..+++.|++||.... +.. ..+.++...+..|+++..+......+..+..+.+. .+.|.
T Consensus 115 ~~~~~~l~l~~~l~---P~~k~igvl~~~~~~~--~~~-~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~-~~~da 187 (294)
T PF04392_consen 115 PPIEKQLELIKKLF---PDAKRIGVLYDPSEPN--SVA-QIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALA-EKVDA 187 (294)
T ss_dssp --HHHHHHHHHHHS---TT--EEEEEEETT-HH--HHH-HHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHC-TT-SE
T ss_pred cCHHHHHHHHHHhC---CCCCEEEEEecCCCcc--HHH-HHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhh-ccCCE
Confidence 34556777666655 4568999999996532 222 23678888888899888777888888877777764 46775
Q ss_pred EEEEcCCchHHHHHHHHhc
Q 022147 170 IVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 170 IVvvGGDGTl~evvngL~~ 188 (302)
++ +..|+++..-...+..
T Consensus 188 ~~-~~~~~~~~~~~~~i~~ 205 (294)
T PF04392_consen 188 LY-LLPDNLVDSNFEAILQ 205 (294)
T ss_dssp EE-E-S-HHHHHTHHHHHH
T ss_pred EE-EECCcchHhHHHHHHH
Confidence 54 5678888776555543
No 130
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=82.00 E-value=17 Score=33.06 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=52.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCC-chHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGD-GTl~evvngL 186 (302)
.+.+.+++ |.....--.+++ ..++..+++.|+++.+..+.. +....++.+.+...++|+|++.+.| ..+++.+..+
T Consensus 26 ~~~I~vi~-~~~~~~f~~~~~-~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~ 103 (295)
T PRK10653 26 KDTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 103 (295)
T ss_pred CCeEEEEe-cCCCChHHHHHH-HHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHH
Confidence 34555555 554433334444 577888999998887765532 3333455566655689988887765 3345566655
Q ss_pred hcCccccccCCccEEEec
Q 022147 187 LEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP 204 (302)
... ++|+-.+.
T Consensus 104 ~~~-------~ipvV~~~ 114 (295)
T PRK10653 104 NQA-------NIPVITLD 114 (295)
T ss_pred HHC-------CCCEEEEc
Confidence 543 56776664
No 131
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=81.93 E-value=12 Score=34.01 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEecCC
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
...++..+++.|+.+.+..+... ....++.+++...++|+||+.+.|.. +.+.+..+... .+|+..+-..
T Consensus 18 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~-------~ipvV~~~~~ 89 (288)
T cd01538 18 RPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADA-------GIPVIAYDRL 89 (288)
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHC-------CCCEEEECCC
Confidence 35777888888988887766532 23345666666678999999998875 45666666543 5676666443
No 132
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=81.21 E-value=14 Score=31.53 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCcEEEEEe---CCcchHHHHHHHhhcCCCce-EEEEcCCchHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 131 DDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T---~~~~~a~el~~~~~~~~~d~-IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
++....|+..|++|++... ..+++..++++++...+.+. |.++|+.+-|--++.++- ..|+.-+|.-
T Consensus 15 ~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t---------~~PVIgvP~~ 85 (156)
T TIGR01162 15 KKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALT---------PLPVIGVPVP 85 (156)
T ss_pred HHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhcc---------CCCEEEecCC
Confidence 5788889999999988765 34566778888877666765 556688888888888775 4577777876
Q ss_pred Ch
Q 022147 207 TG 208 (302)
Q Consensus 207 Tg 208 (302)
++
T Consensus 86 ~~ 87 (156)
T TIGR01162 86 SK 87 (156)
T ss_pred cc
Confidence 53
No 133
>PRK07308 flavodoxin; Validated
Probab=80.78 E-value=11 Score=30.90 Aligned_cols=84 Identities=23% Similarity=0.194 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHHH----H
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVE----V 182 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~e----v 182 (302)
+++.|++=... |..+++. +.+...|...|+.+++........ .+ ...+|.|+++. |+|.+.+ .
T Consensus 2 ~~~~IvY~S~t--GnTe~iA-~~ia~~l~~~g~~~~~~~~~~~~~-----~~--l~~~d~vi~g~~t~g~G~~p~~~~~f 71 (146)
T PRK07308 2 ALAKIVYASMT--GNTEEIA-DIVADKLRELGHDVDVDECTTVDA-----SD--FEDADIAIVATYTYGDGELPDEIVDF 71 (146)
T ss_pred ceEEEEEECCC--chHHHHH-HHHHHHHHhCCCceEEEecccCCH-----hH--hccCCEEEEEeCccCCCCCCHHHHHH
Confidence 46788885544 4555544 678888888888877765543321 12 24678777765 7886654 3
Q ss_pred HHHHhcCccccccCCccEEEecCCC
Q 022147 183 VNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP~GT 207 (302)
++.|... .....+++++-.|.
T Consensus 72 l~~l~~~----~l~~k~~~vfG~Gd 92 (146)
T PRK07308 72 YEDLADL----DLSGKIYGVVGSGD 92 (146)
T ss_pred HHHHhcC----CCCCCEEEEEeeCC
Confidence 3333222 12356777765554
No 134
>PRK09271 flavodoxin; Provisional
Probab=80.51 E-value=5.3 Score=33.67 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHHH----H
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVE----V 182 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~e----v 182 (302)
+|++|++=...| .++++. +.+...|...|+++++....... ..++. .+..++|.|+++. |+|.+.+ +
T Consensus 1 mkv~IvY~S~tG--nTe~~A-~~ia~~l~~~g~~v~~~~~~~~~-~~~~~--~~~~~~d~vilgt~T~~~G~~p~~~~~f 74 (160)
T PRK09271 1 MRILLAYASLSG--NTREVA-REIEERCEEAGHEVDWVETDVQT-LAEYP--LDPEDYDLYLLGTWTDNAGRTPPEMKRF 74 (160)
T ss_pred CeEEEEEEcCCc--hHHHHH-HHHHHHHHhCCCeeEEEeccccc-ccccc--cCcccCCEEEEECcccCCCcCCHHHHHH
Confidence 478888866555 555544 68888899999887766543321 11111 1234688888887 6787554 3
Q ss_pred HHHHhcCccccccCCccEEEecCC
Q 022147 183 VNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP~G 206 (302)
++.|.... ....+++++-.|
T Consensus 75 ~~~l~~~~----~~~k~~avfgsg 94 (160)
T PRK09271 75 IAELAETI----GKPPNVAVFGTG 94 (160)
T ss_pred HHHHHHHh----ccCCeEEEEecC
Confidence 33443311 113457777554
No 135
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=80.42 E-value=11 Score=33.53 Aligned_cols=85 Identities=11% Similarity=0.172 Sum_probs=50.2
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch---HHHHHHHhhcCCCceEEEEcCCch-HHHHHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH---AKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~---a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL 186 (302)
++.||+...+...- ..+ .+.++..+++.|+++.+..+...++ ..++.+.+...++|+||+.+.+.+ +.+.+..+
T Consensus 1 ~igvi~~~~~~~~~-~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (275)
T cd06320 1 KYGVVLKTLSNEFW-RSL-KEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERA 78 (275)
T ss_pred CeeEEEecCCCHHH-HHH-HHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHH
Confidence 35667754332222 223 3567778888888877665533222 234455555568899888877643 56667766
Q ss_pred hcCccccccCCccEEEec
Q 022147 187 LEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP 204 (302)
.+. ++|+-.+.
T Consensus 79 ~~~-------~iPvV~~~ 89 (275)
T cd06320 79 KKK-------GIPVVNVN 89 (275)
T ss_pred HHC-------CCeEEEEC
Confidence 554 56666553
No 136
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=80.04 E-value=12 Score=33.13 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=45.8
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhc---CCcEE--EEEeCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDA---NIQFT--VQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVV 183 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~a---g~~~~--v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evv 183 (302)
|+.++++..+.. -..+++ +.+...+++. |..++ +..+.. .....+..+.+...++|+||+.+.|-. +.+++
T Consensus 1 ~Ig~i~~~~~~~-~~~~~~-~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l 78 (272)
T cd06300 1 KIGLSNSYAGNT-WRAQML-DEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVI 78 (272)
T ss_pred CeEEeccccCCh-HHHHHH-HHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHH
Confidence 355666433322 222233 4666677777 76433 333332 222334555555568899999888743 45566
Q ss_pred HHHhcCccccccCCccEEEec
Q 022147 184 NGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP 204 (302)
+.+.+. .+|+-.+-
T Consensus 79 ~~~~~~-------~iPvv~~~ 92 (272)
T cd06300 79 EEACEA-------GIPVVSFD 92 (272)
T ss_pred HHHHHC-------CCeEEEEe
Confidence 666543 56666553
No 137
>PRK04155 chaperone protein HchA; Provisional
Probab=80.04 E-value=15 Score=34.30 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=26.3
Q ss_pred cCCCceEEEEcCCchHH---------HHHHHHhcCccccccCCccEEEecCCCh
Q 022147 164 LSKYDGIVCVSGDGILV---------EVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 164 ~~~~d~IVvvGGDGTl~---------evvngL~~~~~~~~~~~~plgiIP~GTg 208 (302)
.+.||+|++.||=|... ++++...+. ..+++.|=.|-.
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~-------~K~VaAICHGPa 191 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDN-------DRFIITLCHGPA 191 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHc-------CCEEEEEChHHH
Confidence 46899999999988743 444444443 567777777664
No 138
>PLN02564 6-phosphofructokinase
Probab=79.83 E-value=4.9 Score=40.38 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCCCCch--hhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHH-
Q 022147 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG- 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a--~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng- 185 (302)
.+++-|.|-..|=-.. ..+-.+.+..+...-| ++.-|.+. .+..++++.+...+.|.++++|||||+.-+..-
T Consensus 120 ~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GG---TiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~ 196 (484)
T PLN02564 120 TRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGG---TILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIY 196 (484)
T ss_pred eEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCC---ceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHH
Confidence 4677777765553221 1111234555555444 23344432 345677888888899999999999998765332
Q ss_pred --HhcCccccccCCccEEEecCCChhhHHH
Q 022147 186 --LLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 186 --L~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+.++ ..++++.-||.==-||+..
T Consensus 197 e~~~~~-----g~~i~VIGIPKTIDNDI~~ 221 (484)
T PLN02564 197 EEIRRR-----GLKVAVAGIPKTIDNDIPV 221 (484)
T ss_pred HHHHHc-----CCCceEEEecccccCCCcC
Confidence 2222 2467788999988888874
No 139
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=79.82 E-value=21 Score=32.83 Aligned_cols=87 Identities=9% Similarity=0.087 Sum_probs=50.2
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+.+.+.+++...+.. --..++ +.+...++..|+.+.+..+... +...++.+.+...++|+||+.+.+-.-.+.+..+
T Consensus 60 ~~~~Igvv~~~~~~~-~~~~l~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l 137 (328)
T PRK11303 60 RTRSIGLIIPDLENT-SYARIA-KYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRL 137 (328)
T ss_pred CCceEEEEeCCCCCc-hHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHH
Confidence 345677776432221 122233 5677778888888877665432 2233455556567899999988754334555555
Q ss_pred hcCccccccCCccEEEe
Q 022147 187 LEREDWNDAIKVPLGVV 203 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiI 203 (302)
.+. .+|+..+
T Consensus 138 ~~~-------~iPvV~v 147 (328)
T PRK11303 138 QND-------GLPIIAL 147 (328)
T ss_pred Hhc-------CCCEEEE
Confidence 433 4565554
No 140
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=79.74 E-value=24 Score=32.69 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=50.0
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+.+.+.+++...+. .--..+ .+.+...+++.|..+.+..+... +...+..+.+...++|+||+.+.+....+.++.+
T Consensus 63 ~~~~Igvv~~~~~~-~~~~~i-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l 140 (342)
T PRK10014 63 QSGVIGLIVRDLSA-PFYAEL-TAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMA 140 (342)
T ss_pred CCCEEEEEeCCCcc-chHHHH-HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHH
Confidence 45567777743221 111222 24667778888877665555432 2223455566667899999998876544556655
Q ss_pred hcCccccccCCccEEEe
Q 022147 187 LEREDWNDAIKVPLGVV 203 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiI 203 (302)
... .+|+..+
T Consensus 141 ~~~-------~iPvV~~ 150 (342)
T PRK10014 141 EEK-------GIPVVFA 150 (342)
T ss_pred hhc-------CCCEEEE
Confidence 443 4565555
No 141
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=79.74 E-value=3.1 Score=41.34 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=60.4
Q ss_pred cEEEEEEcCCCCCC-----chhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 110 KRLYIFVNPFGGKK-----IASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 110 ~r~~vivNP~sG~~-----~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
.+++-|.|-..|=- +-..+-.+.+..+...-| ++.-|.+ +.+..++++.+...+.|.++++|||||+.-+.
T Consensus 113 ~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GG---TiLGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~ 189 (443)
T PRK06830 113 RRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGG---TILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGAS 189 (443)
T ss_pred eEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCC---ccccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 46777777655421 222222245555555444 2333433 33456777888888999999999999986654
Q ss_pred HHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
. |.+. ..+...++++.-||.==-||+..
T Consensus 190 ~-l~ee-~~~~g~~I~VIGIPKTIDNDi~~ 217 (443)
T PRK06830 190 A-IAEE-IERRGLKISVIGIPKTIDNDINF 217 (443)
T ss_pred H-HHHH-HHHhCCCceEEEeccccCCCCcC
Confidence 3 2220 00112468999999988898864
No 142
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=79.40 E-value=28 Score=31.94 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=55.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcE--EEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQF--TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~--~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+++.+|....+ .+.. ..+.++..+++.|+++ .........+...+++++...++|.|+++++-+....+++.
T Consensus 134 g~~~v~iv~~~~~---~g~~-~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~ 209 (343)
T PF13458_consen 134 GAKKVAIVYPDDP---YGRS-LAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDPADAAAFLRQ 209 (343)
T ss_dssp TTSEEEEEEESSH---HHHH-HHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTHHHHHHHHHH
T ss_pred CCcEEEEEecCch---hhhH-HHHHHHHHHhhcCceeccceecccccccchHHHHHHhhcCCCEEEEeccchhHHHHHHH
Confidence 3688999986532 2222 2357888999999885 23333444566677788877789999999988889999999
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+...
T Consensus 210 ~~~~ 213 (343)
T PF13458_consen 210 LRQL 213 (343)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9765
No 143
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=79.33 E-value=19 Score=32.43 Aligned_cols=85 Identities=12% Similarity=-0.014 Sum_probs=49.3
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHh
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~ 187 (302)
|++.+++. .... .....+.+.+...+++.|..+.+..+.. ...-.++.+.+...++|+||+.+.|.. ..+.+..+.
T Consensus 1 ~~ig~i~~-~~~~-~~~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~ 78 (280)
T cd06315 1 KNIIFVAS-DLKN-GGILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQ 78 (280)
T ss_pred CeEEEEec-ccCC-cHHHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 34666663 2222 2222233577788888887766554432 222235566666678999999998743 334455554
Q ss_pred cCccccccCCccEEEe
Q 022147 188 EREDWNDAIKVPLGVV 203 (302)
Q Consensus 188 ~~~~~~~~~~~plgiI 203 (302)
.. ++|+..+
T Consensus 79 ~~-------~iPvV~~ 87 (280)
T cd06315 79 KA-------GIPVVGW 87 (280)
T ss_pred HC-------CCCEEEe
Confidence 33 6777666
No 144
>PRK14071 6-phosphofructokinase; Provisional
Probab=79.31 E-value=5.3 Score=38.61 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 155 a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
..++.+.+...+.|.++++|||||+. .++.|.+. ..+|+-.||.=--||+..+
T Consensus 96 ~~~~~~~l~~~~Id~Li~IGGdgS~~-~a~~L~~~------~~i~vIgiPkTIDNDl~~t 148 (360)
T PRK14071 96 SQEIIDGYHSLGLDALIGIGGDGSLA-ILRRLAQQ------GGINLVGIPKTIDNDVGAT 148 (360)
T ss_pred HHHHHHHHHHcCCCEEEEECChhHHH-HHHHHHHh------cCCcEEEecccccCCCcCc
Confidence 34566777778899999999999986 44555542 2789999999888988643
No 145
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=79.23 E-value=17 Score=32.29 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiI 203 (302)
+.++..+++.|+++.++.++... ...+..+.+...++|+||+.+.|.. ..+.+..+.+. ++|+..+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 86 (277)
T cd06319 19 RGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQA-------KIPVVIA 86 (277)
T ss_pred HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHHC-------CCCEEEE
Confidence 57777888888887766554322 2234445555578999998887754 34566655543 5666554
No 146
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=78.74 E-value=11 Score=30.28 Aligned_cols=59 Identities=25% Similarity=0.251 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCcEEEEEeC----CcchH------HHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 131 DDVKPLLEDANIQFTVQETT----QQLHA------KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~----~~~~a------~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
+.+...|+..|+.+...... ....+ .++.+.+....+|.+|+++||+-+..+++.|.++
T Consensus 50 ~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~ 118 (146)
T PF01936_consen 50 KSFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRER 118 (146)
T ss_dssp HHHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH
T ss_pred hhHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHc
Confidence 34557788888866544331 11222 1233333334579999999999999999999865
No 147
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=78.60 E-value=2.8 Score=39.12 Aligned_cols=51 Identities=25% Similarity=0.409 Sum_probs=39.7
Q ss_pred HHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 156 ~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.++++.+...+.|.+|++|||||+..+ +.|.+. ..+|+..||.=--||+..
T Consensus 82 ~~~~~~l~~~~Id~Li~IGG~gs~~~a-~~L~~~------~~i~vigiPkTIDNDi~g 132 (282)
T PF00365_consen 82 KKIVENLKKLGIDALIVIGGDGSMKGA-HKLSEE------FGIPVIGIPKTIDNDIPG 132 (282)
T ss_dssp HHHHHHHHHTTESEEEEEESHHHHHHH-HHHHHH------HHSEEEEEEEETTSSCTT
T ss_pred hhHHHHHHHhCCCEEEEecCCCHHHHH-HHHHhc------CceEEEEEeccccCCcCC
Confidence 356677777889999999999998775 555532 158999999988888875
No 148
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=78.41 E-value=6.8 Score=36.36 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=40.4
Q ss_pred EEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC------cc----hHHHHHHHhhcCCCceEEE-EcCCchH
Q 022147 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------QL----HAKEIVKVLDLSKYDGIVC-VSGDGIL 179 (302)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~------~~----~a~el~~~~~~~~~d~IVv-vGGDGTl 179 (302)
-|+.|.++-... ..+ +.....|+..|+++.+..+-. .+ .|.++.+.+.....++|++ .||+|+.
T Consensus 2 ~iiapSs~~~~~-~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~ 76 (282)
T cd07025 2 GIVAPSSPIDEE-ERL-ERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGAN 76 (282)
T ss_pred EEEeCCCCCCcH-HHH-HHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH
Confidence 378898876553 445 577888999988766544322 12 2345555555556777665 5889974
No 149
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=78.36 E-value=28 Score=31.98 Aligned_cols=87 Identities=11% Similarity=0.149 Sum_probs=51.3
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+.+.+.+++..... .-...+ ...+...+++.|+.+.+..+... +...+..+.+...+.|+||+.+.+..-.+.+..|
T Consensus 59 ~~~~Igvi~~~~~~-~~~~~~-~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l 136 (327)
T TIGR02417 59 RSRTIGLVIPDLEN-YSYARI-AKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPEDAYYQKL 136 (327)
T ss_pred CCceEEEEeCCCCC-ccHHHH-HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHH
Confidence 45677777743222 222233 35777888888988876655432 2223445555557899999988765334556655
Q ss_pred hcCccccccCCccEEEe
Q 022147 187 LEREDWNDAIKVPLGVV 203 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiI 203 (302)
... .+|+-++
T Consensus 137 ~~~-------~iPvV~~ 146 (327)
T TIGR02417 137 QNE-------GLPVVAL 146 (327)
T ss_pred Hhc-------CCCEEEE
Confidence 443 4566555
No 150
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=78.25 E-value=3.5 Score=34.51 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCch----------HHHHHHHHhcCccccccCCcc
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI----------LVEVVNGLLEREDWNDAIKVP 199 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGT----------l~evvngL~~~~~~~~~~~~p 199 (302)
.+++...|++.|++++........++ ++.+.+. ..|.|++.|||=. +.+++...+.. ..+
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~-~~~~~i~--~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~-------G~v 71 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDA-DILEAIR--EADAIFLGGGDTFRLLRQLKETGLDEAIREAYRK-------GGV 71 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHH-HHHHHHH--HSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHT-------TSE
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChH-HHHHHHH--hCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHC-------CCE
Confidence 35778899999998776666554444 5555553 5799999999953 22233333322 467
Q ss_pred EEEecCCChh
Q 022147 200 LGVVPAGTGN 209 (302)
Q Consensus 200 lgiIP~GTgN 209 (302)
++-..+|+..
T Consensus 72 i~G~SAGA~i 81 (154)
T PF03575_consen 72 IIGTSAGAMI 81 (154)
T ss_dssp EEEETHHHHC
T ss_pred EEEEChHHhh
Confidence 7777887755
No 151
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=77.71 E-value=42 Score=31.04 Aligned_cols=90 Identities=13% Similarity=-0.037 Sum_probs=57.5
Q ss_pred HHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--CCcchHHHHHHHhhcCCCceEEEE
Q 022147 96 CEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCV 173 (302)
Q Consensus 96 ~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~~~~~a~el~~~~~~~~~d~IVvv 173 (302)
...+-+++......+++.+|+.... -+ .... ..++..+++.|+++..... ....+....+.++...+.|.|++.
T Consensus 122 ~~~~~~~~~~~~~~~~v~ii~~~~~-~g--~~~~-~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~ 197 (340)
T cd06349 122 APLLADYAVKDLGFKKVAILSVNTD-WG--RTSA-DIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILI 197 (340)
T ss_pred HHHHHHHHHHHcCCcEEEEEecCCh-Hh--HHHH-HHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEc
Confidence 3344444322223468888875533 22 2233 5788889998887653221 223456667777777789999998
Q ss_pred cCCchHHHHHHHHhcC
Q 022147 174 SGDGILVEVVNGLLER 189 (302)
Q Consensus 174 GGDGTl~evvngL~~~ 189 (302)
+..+.+..+++.+...
T Consensus 198 ~~~~~~~~~~~~~~~~ 213 (340)
T cd06349 198 SYYNDGAPIARQARAV 213 (340)
T ss_pred cccchHHHHHHHHHHc
Confidence 8888888888888765
No 152
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=77.34 E-value=7.2 Score=37.34 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=39.4
Q ss_pred HHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHH
Q 022147 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (302)
Q Consensus 155 a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A 212 (302)
-.++++.+...+.|.+|++|||||+..+.. |.+.- .++..++++..||.=--||+.
T Consensus 81 ~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~-L~e~~-~~~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 81 RAKAAENLKKHGIDALVVIGGDGSYTGADL-LTEEW-PSKYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred HHHHHHHHHHhCCCEEEEeCCHHHHHHHHH-HHHHH-HhcCCCccEEEeeecccCCCc
Confidence 456777787788999999999999866532 22210 011247999999987788876
No 153
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=77.09 E-value=18 Score=32.36 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchH-HHHHHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl-~evvngL~~~~~~~~~~~~plgiI 203 (302)
+.+...+++.|+.+.+..+.......+..+.+...+.|+||+.+-|... -++++.+... .+|+..+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~-------~iPvV~~ 85 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVPDGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKAY-------NMKVVAV 85 (289)
T ss_pred HHHHHHHHHcCCEEEEccCCCHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHhC-------CCeEEEe
Confidence 5777888888988776655533333344555555789999999888533 3456666554 5676655
No 154
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=76.88 E-value=20 Score=31.72 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=41.4
Q ss_pred HHHHHHHHh-cCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLED-ANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~-ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiI 203 (302)
+.+...+++ .|+++.+..+.. .....+..+.+...+.|+||+.+.|.. ..+++..+... ++|+-.+
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~-------~iPvv~~ 87 (272)
T cd06301 19 NAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAA-------GIPLVYV 87 (272)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHC-------CCeEEEe
Confidence 466777777 777766654422 222334555555568999999988854 34666666554 5676655
No 155
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=76.84 E-value=28 Score=30.75 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEe
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiI 203 (302)
+.+.+...+++.|+++.+..+... ....++.+.+...+.|+||+.+.|-. ..+.+..+... ++|+-.+
T Consensus 18 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~-------~iPvV~~ 87 (275)
T cd06317 18 YNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQA-------GIPVVIT 87 (275)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHHC-------CCcEEEe
Confidence 336777888889988877655422 22234455555568999999888753 45666666554 5676554
No 156
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=76.66 E-value=18 Score=33.09 Aligned_cols=84 Identities=12% Similarity=0.215 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHh--cCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLED--ANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~--ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL 186 (302)
|+.||++-... .....+.+.+...++. .++.+.+..+.+.. .-.++.+.+...++|+||+++.|.. +..+++.+
T Consensus 1 ~Igviv~~~~~--~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 78 (303)
T cd01539 1 KIGVFLYKFDD--TFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKA 78 (303)
T ss_pred CeEEEeeCCCC--hHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHH
Confidence 35667643221 1122233567777777 66666555443211 1224455666678999999988865 56677776
Q ss_pred hcCccccccCCccEEEe
Q 022147 187 LEREDWNDAIKVPLGVV 203 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiI 203 (302)
... .+|+..+
T Consensus 79 ~~~-------giPvV~~ 88 (303)
T cd01539 79 KQK-------NIPVIFF 88 (303)
T ss_pred HHC-------CCCEEEe
Confidence 554 5676665
No 157
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=76.65 E-value=27 Score=31.73 Aligned_cols=99 Identities=11% Similarity=0.119 Sum_probs=60.9
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcC-CCc-eEEEEcCCchHHHHHHHHh
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS-KYD-GIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~-~~d-~IVvvGGDGTl~evvngL~ 187 (302)
|++..++|+++|.||.-.. -.+...|...|-.+.++.++...+..+..+..... .++ .+.+.++| +.. .+...+
T Consensus 1 M~vItf~s~KGGaGKTT~~--~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~-e~~-~l~~~~ 76 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAA--MALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD-ELT-ILEDAY 76 (231)
T ss_pred CCeEEEecCCCCCcHHHHH--HHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc-chh-hHHHHH
Confidence 4678999999999998654 36788898899999999999888888876655332 233 33333333 222 222222
Q ss_pred cCccccccCCccEEEecC-CChhhHHHhh
Q 022147 188 EREDWNDAIKVPLGVVPA-GTGNGMIKSL 215 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~-GTgN~~A~sL 215 (302)
+..+ .....+.++=. |++|.++...
T Consensus 77 e~a~---~~~~d~VlvDleG~as~~~~~a 102 (231)
T PF07015_consen 77 EAAE---ASGFDFVLVDLEGGASELNDYA 102 (231)
T ss_pred HHHH---hcCCCEEEEeCCCCCchhHHHH
Confidence 2111 01245556655 6666665443
No 158
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=76.58 E-value=22 Score=32.58 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=61.0
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
+.+.||+...+..--+ ++. ..+...+++.|..+-+..|.+..+..+..+.+...+.|+||+++-+.. .+-+..+...
T Consensus 2 ~~IGvivp~~~npff~-~ii-~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~-~~~l~~~~~~ 78 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFA-EII-RGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND-DEELRRLIKS 78 (279)
T ss_dssp CEEEEEESSSTSHHHH-HHH-HHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT-CHHHHHHHHT
T ss_pred CEEEEEECCCCCcHHH-HHH-HHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC-hHHHHHHHHc
Confidence 3567777655433333 344 578888999999888888887777667777777789999999987776 5566666554
Q ss_pred ccccccCCccEEEecCC
Q 022147 190 EDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 190 ~~~~~~~~~plgiIP~G 206 (302)
++|+-.+-.-
T Consensus 79 -------~iPvV~~~~~ 88 (279)
T PF00532_consen 79 -------GIPVVLIDRY 88 (279)
T ss_dssp -------TSEEEEESS-
T ss_pred -------CCCEEEEEec
Confidence 5676666544
No 159
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.54 E-value=33 Score=30.24 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCc
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDG 177 (302)
..++..++..|+++.+..+....+ -.++.+.+...++|+|+++..|-
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~ 66 (270)
T cd06296 19 RGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPEL 66 (270)
T ss_pred HHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 456666666676665554443222 22344455455677777766653
No 160
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=76.52 E-value=32 Score=30.23 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCch
Q 022147 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
+.+...+++.|+.+.+..+... +.-.++.+.+...+.|+||+.+.|..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 67 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQS 67 (265)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 3445555555555554443321 11123333444445666666655443
No 161
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=76.47 E-value=27 Score=31.01 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGD 176 (302)
..+...+++.|+++.+..+..++...++.+.+...++|+|++++.+
T Consensus 21 ~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 21 EGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 5677778888887766655444444456666666789999998877
No 162
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.42 E-value=24 Score=30.92 Aligned_cols=56 Identities=13% Similarity=0.246 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+.++..+++.|+.+.+..+.. ...-.++.+.+...++|+|++.+.+....++++.+
T Consensus 19 ~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~ 75 (268)
T cd06289 19 AGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRL 75 (268)
T ss_pred HHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHH
Confidence 445555555555444332221 11122334444444566666665544323344444
No 163
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=76.37 E-value=21 Score=34.30 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=49.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE----eCCcchHHHHHHHhhcCCC---ceEEEEcCCchHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKY---DGIVCVSGDGILVEV 182 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~----T~~~~~a~el~~~~~~~~~---d~IVvvGGDGTl~ev 182 (302)
+|+++|..+.-. . .+.+.+...|. ++.+.++. ..+.+.+.++.+.+...+. |.||++|| |.+.++
T Consensus 20 ~r~lIVtD~~v~----~-l~~~~l~~~L~--~~~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~D~ 91 (346)
T cd08196 20 ENDVFIVDANVA----E-LYRDRLDLPLD--AAPVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQDV 91 (346)
T ss_pred CeEEEEECccHH----H-HHHHHHHHHhc--CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHHH
Confidence 688888887442 2 24467777776 34444433 1233444455555555455 88888887 777777
Q ss_pred HHHHh---cCccccccCCccEEEecC
Q 022147 183 VNGLL---EREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 183 vngL~---~~~~~~~~~~~plgiIP~ 205 (302)
...+. .+ .+|+..||.
T Consensus 92 ak~vA~~~~r-------gi~~i~iPT 110 (346)
T cd08196 92 TTFVASIYMR-------GVSWSFVPT 110 (346)
T ss_pred HHHHHHHHHc-------CCCeEEecc
Confidence 77664 44 567777776
No 164
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=76.00 E-value=8.3 Score=37.88 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=40.2
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHH
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A 212 (302)
....+++.+...+.|.++++|||||+.-+. .|.+.-. +....+|+..||.==-||+.
T Consensus 100 ~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~-~L~~~~~-~~g~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 100 PLKVAAERLAADGVDILHTIGGDDTNTTAA-DLAAYLA-ENGYDLTVVGLPKTIDNDVV 156 (403)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHHHHH-HHHHHHH-HhCCCceEEEeeeeeeCCCC
Confidence 345667777778899999999999987653 3322100 01136899999998889886
No 165
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=75.71 E-value=7.1 Score=33.62 Aligned_cols=86 Identities=19% Similarity=0.238 Sum_probs=53.8
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC--CchHHHHHHHHh
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG--DGILVEVVNGLL 187 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG--DGTl~evvngL~ 187 (302)
++++|++-...| ..+++. +.+...|.. |++++++..+... ..+..+||.||+.++ -|.+...+..++
T Consensus 1 MkilIvY~S~~G--~T~~iA-~~Ia~~l~~-g~~v~~~~~~~~~-------~~~l~~yD~vIlGspi~~G~~~~~~~~fl 69 (177)
T PRK11104 1 MKTLILYSSRDG--QTRKIA-SYIASELKE-GIQCDVVNLHRIE-------EPDLSDYDRVVIGASIRYGHFHSALYKFV 69 (177)
T ss_pred CcEEEEEECCCC--hHHHHH-HHHHHHhCC-CCeEEEEEhhhcC-------ccCHHHCCEEEEECccccCCcCHHHHHHH
Confidence 478899976555 444443 578888887 8877776544321 112356999888776 466666666665
Q ss_pred cCccccccCCccEEEecCCC
Q 022147 188 EREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GT 207 (302)
.+.. ......|++++-+|-
T Consensus 70 ~~~~-~~l~~K~v~~F~v~l 88 (177)
T PRK11104 70 KKHA-TQLNQMPSAFFSVNL 88 (177)
T ss_pred HHHH-HHhCCCeEEEEEech
Confidence 4311 112357888888873
No 166
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=75.69 E-value=25 Score=31.54 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCcEEEEEeCC-----cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 131 DDVKPLLEDANIQFTVQETTQ-----QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~-----~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
+.+...++..|+.+.+..+.. ...-.++.+.+...++|+||+.+.+.+..+.+..+.+.
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~ 83 (280)
T cd06303 20 ASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLAS 83 (280)
T ss_pred HHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhC
Confidence 567778888898877654322 12223445566567899999988766556677766654
No 167
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=75.54 E-value=32 Score=30.21 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcc--hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 131 DDVKPLLEDANIQFTVQETTQQL--HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~--~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
..++..+++.|+++.+..+.... ...++.+.+...++|+||+.+++....+.++.+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 77 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLD 77 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHH
Confidence 45556666666655554443211 1222333333445666666666532234444443
No 168
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=75.00 E-value=34 Score=29.58 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
+.++..++..|+++.+....... ...+.++.+...++|+||+.+.|.+-..
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~ 70 (264)
T cd06267 19 RGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL 70 (264)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH
Confidence 45555555556655544433211 1234444444456677777666655444
No 169
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=74.69 E-value=24 Score=31.45 Aligned_cols=66 Identities=6% Similarity=-0.060 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcc---hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDANIQFTVQETTQQL---HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~---~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiI 203 (302)
..++..++..|+++.+..+.... .-.+..+.+...++|+||+.+.|.+-.+.+..+... .+|+-.+
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~-------giPvV~~ 87 (268)
T cd06306 19 YGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAA-------SIPVIAL 87 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHC-------CCCEEEe
Confidence 46677788888887766544222 222455666667899999998876543344554443 6777655
No 170
>PRK14072 6-phosphofructokinase; Provisional
Probab=74.47 E-value=8.5 Score=37.95 Aligned_cols=60 Identities=7% Similarity=0.091 Sum_probs=41.1
Q ss_pred chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 153 ~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
+.-.++.+.+...+.|.+|++|||||+.-+.. |.+.-. +...++++..||.==-||+..+
T Consensus 90 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~-L~e~~~-~~g~~i~vIgIPkTIDNDl~gt 149 (416)
T PRK14072 90 AEYERLLEVFKAHDIGYFFYNGGNDSMDTALK-VSQLAK-KMGYPIRCIGIPKTIDNDLPGT 149 (416)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChHHHHHHHH-HHHHHH-HhCCCceEEEeeecccCCCCCC
Confidence 34456667777778999999999999876532 322100 0012589999998878998854
No 171
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.15 E-value=31 Score=31.59 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcC--CCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLS--KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~--~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
+.++..+++.|+.+.+..++...+ -.++.+.+... ++|+||+.+.+-...++++.+... .+|+.++-.
T Consensus 20 ~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~-------giPvV~~~~ 90 (305)
T cd06324 20 RFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGA-------GVKLFLVNS 90 (305)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhC-------CCeEEEEec
Confidence 567788888888877765543222 23455666666 899999988765555667766654 667766643
No 172
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=73.69 E-value=40 Score=29.56 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+.++..+++.|..+.+..+.... ...++.+.+...++|+||+++.+.+ .++++.+
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-~~~~~~l 74 (268)
T cd06298 19 RGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKIS-EEHREEF 74 (268)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCc-HHHHHHH
Confidence 45556666666666555443211 1223444444456777777665432 2344444
No 173
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=73.27 E-value=44 Score=29.36 Aligned_cols=46 Identities=13% Similarity=0.087 Sum_probs=20.4
Q ss_pred HHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGD 176 (302)
+.+...+++.|+.+.+..+++. +...+..+.+...+.|+|++++.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (268)
T cd06273 19 QAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLD 65 (268)
T ss_pred HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3445555555554444333221 112233344444455666665544
No 174
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=73.09 E-value=12 Score=36.00 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=55.7
Q ss_pred CcEEEEEEcCCCCCCch--hhhHHHHHHHHHHhcCCcE---EEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQF---TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a--~~~~~~~v~~~L~~ag~~~---~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
.-+++-|+|-..|=-.. .++-...+..++..-|... ...+.+..+.....++.+...+.|.+|++|||||..-.
T Consensus 32 g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA- 110 (347)
T COG0205 32 GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGA- 110 (347)
T ss_pred CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCCChHHHH-
Confidence 34566666655553222 1111134445555544321 01111112222345666777789999999999997654
Q ss_pred HHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.-|.+. ..+|+--||.==-||+..
T Consensus 111 ~~Lae~------~~i~vVGvPkTIDNDi~~ 134 (347)
T COG0205 111 ALLAEE------GGIPVVGVPKTIDNDISG 134 (347)
T ss_pred HHHHHh------cCCcEEecCCCccCCCcc
Confidence 334443 148888999888899883
No 175
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=72.93 E-value=26 Score=30.74 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiI 203 (302)
+.+...+++.|+.+.+..+.+ +....++.+++...++|+|++.+-+.. ..+.+..+... ++|+..+
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~-------~ipvv~~ 86 (268)
T cd06323 19 DGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEA-------GIPVFTI 86 (268)
T ss_pred HHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHC-------CCcEEEE
Confidence 577888888888877665543 222345566666678999988765433 23566666443 5676655
No 176
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=72.87 E-value=13 Score=39.48 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=42.2
Q ss_pred chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 153 ~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
++...+++.+...+.|.+|++|||||+.-+..---.+ +.-....+|+..||.=--||+.-
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~-~~~~~~~i~vvgIPkTIDNDi~g 524 (745)
T TIGR02478 465 KDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAR-EKYPAFRIPMVVIPATISNNVPG 524 (745)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHH-hhCCCCCccEEEecccccCCCCC
Confidence 3455677778778999999999999987654322111 10112479999999988899873
No 177
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=72.48 E-value=51 Score=29.05 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=20.4
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGD 176 (302)
+.+...+++.|+.+.+..+.+..+ ..++.+.+...++|+||+.+-|
T Consensus 19 ~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~ 65 (268)
T cd06270 19 SGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKA 65 (268)
T ss_pred HHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCC
Confidence 344455555555555444432211 1123333333455666655543
No 178
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.48 E-value=29 Score=31.34 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCcEEEEE-eCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDANIQFTVQE-TTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~-T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiI 203 (302)
+.+...+++.|+.+.++. ++. +....+..+.+...++|+||+.+.|-. ..+.++.+..+ .+|+..+
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 87 (294)
T cd06316 19 RGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAEA-------GIKLVFM 87 (294)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHHc-------CCcEEEe
Confidence 566777888888776432 322 222224444555568999999887754 35677777665 5666555
No 179
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=72.04 E-value=6.7 Score=41.65 Aligned_cols=101 Identities=10% Similarity=0.168 Sum_probs=60.2
Q ss_pred cEEEEEEcCCCCCCch----hh-hHHHHHHHHHHhcCCcEEEEEeCC------cchHHHHHHHhhcCCCceEEEEcCCch
Q 022147 110 KRLYIFVNPFGGKKIA----SK-IFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a----~~-~~~~~v~~~L~~ag~~~~v~~T~~------~~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
-+++.|.|-+.|=-+. .+ .| +.+..++..-|- +.-|.+ .+.-.+.++.+...+.|.+|++|||||
T Consensus 34 ~~V~gi~~Gy~GL~~g~~~i~~l~~-~~V~~i~~~GGT---~LGTsR~~~f~~~e~~~~a~~~L~~~~Id~LvvIGGdgS 109 (762)
T cd00764 34 AKVFFVYEGYEGLVKGGDYIKQAEW-ESVSNWLQEGGT---IIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGS 109 (762)
T ss_pred CEEEEEecCHHHHhCCCCCceeCCH-HHHHHHHhCCCC---cccCCCCCcccCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 3677777765543222 11 23 467777766552 122221 123345667777789999999999999
Q ss_pred HHHHH----------HHHhcCc-----cccccCCccEEEecCCChhhHHHh
Q 022147 179 LVEVV----------NGLLERE-----DWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 179 l~evv----------ngL~~~~-----~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
+.-+- ..|.+.. ..+....+++.-||.==-||++-+
T Consensus 110 l~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gT 160 (762)
T cd00764 110 LTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGT 160 (762)
T ss_pred HHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCC
Confidence 86653 2222221 111223688999999888998743
No 180
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=72.00 E-value=59 Score=30.45 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=52.9
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvng 185 (302)
...++.+++ |.-...-... ..+-++..+++.|+.+.+..+.. +....++.+.+...++|+||+.+.+.. +.+.++-
T Consensus 24 ~~~~Ig~i~-~~~~~~f~~~-~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~ 101 (330)
T PRK10355 24 KEVKIGMAI-DDLRLERWQK-DRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKE 101 (330)
T ss_pred CCceEEEEe-cCCCchHHHH-HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHH
Confidence 345566666 4333222222 33567788888898887776543 222335556666678999999987754 4566676
Q ss_pred HhcCccccccCCccEEEe
Q 022147 186 LLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiI 203 (302)
+... .+|+..+
T Consensus 102 ~~~~-------~iPvV~i 112 (330)
T PRK10355 102 AKQE-------GIKVLAY 112 (330)
T ss_pred HHHC-------CCeEEEE
Confidence 6554 5666665
No 181
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=71.92 E-value=79 Score=28.75 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=50.6
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+|+.+|..+.. .+... .+.++..+++.|+++..... ....+....+.++...++|.|++.+.+.....+++.
T Consensus 132 g~~~vail~~~~~---~~~~~-~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~pdaIi~~~~~~~~~~~~~~ 207 (312)
T cd06333 132 GVKTVAFIGFSDA---YGESG-LKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGSGTPAALPAKN 207 (312)
T ss_pred CCCEEEEEecCcH---HHHHH-HHHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHHHHhCCCCEEEEecCCcHHHHHHHH
Confidence 4578888875432 22222 35778888988887542211 112234444444434568988888766656678888
Q ss_pred HhcCccccccCCccEEE
Q 022147 186 LLEREDWNDAIKVPLGV 202 (302)
Q Consensus 186 L~~~~~~~~~~~~plgi 202 (302)
+.+.. .++|+..
T Consensus 208 l~~~g-----~~~p~~~ 219 (312)
T cd06333 208 LRERG-----YKGPIYQ 219 (312)
T ss_pred HHHcC-----CCCCEEe
Confidence 87652 3566543
No 182
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.83 E-value=22 Score=31.83 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCC-chHHHHHHHHhcCccccccCCccEEEec
Q 022147 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGD-GTl~evvngL~~~~~~~~~~~~plgiIP 204 (302)
+.+...+++.|+.+.+..+.. +..-.+..+.+...+.|+||+.+.| ....+.++.+... ++|+..+-
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~~ 87 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIAR-------GIPVIDMG 87 (272)
T ss_pred HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHC-------CCcEEEeC
Confidence 466777888898887776653 2223355666666789999998876 5567777777654 56776663
No 183
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=71.81 E-value=21 Score=29.09 Aligned_cols=87 Identities=10% Similarity=0.160 Sum_probs=46.8
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~evvngL 186 (302)
++++|++=...| .++++. +.+...+...++++++.. +..+.... ..+..++|.|++.. |+|.+.+-+..+
T Consensus 1 M~i~IiY~S~tG--nTe~iA-~~ia~~l~~~g~~v~~~~--~~~~~~~~--~~~~~~~d~iilgs~t~~~g~~p~~~~~f 73 (140)
T TIGR01754 1 MRILLAYLSLSG--NTEEVA-FMIQDYLQKDGHEVDILH--RIGTLADA--PLDPENYDLVFLGTWTWERGRTPDEMKDF 73 (140)
T ss_pred CeEEEEEECCCC--hHHHHH-HHHHHHHhhCCeeEEecc--cccccccC--cCChhhCCEEEEEcCeeCCCcCCHHHHHH
Confidence 478888865444 555554 688888888887765211 10100000 11234688888777 688766434443
Q ss_pred hcCccccccCCccEEEecCC
Q 022147 187 LEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~G 206 (302)
+..-.. ....++++-.|
T Consensus 74 l~~l~~---~~k~~avfgtg 90 (140)
T TIGR01754 74 IAELGY---KPSNVAIFGTG 90 (140)
T ss_pred HHHhcc---cCCEEEEEEcC
Confidence 332110 13466666554
No 184
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=71.79 E-value=14 Score=34.67 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=40.9
Q ss_pred EEEEcCCCCCCc-hhhhHHHHHHHHHHhcCCcEEEEEeCCcc----------hHHHHHHHhhcCCCceEEEE-cCCchH
Q 022147 113 YIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQQL----------HAKEIVKVLDLSKYDGIVCV-SGDGIL 179 (302)
Q Consensus 113 ~vivNP~sG~~~-a~~~~~~~v~~~L~~ag~~~~v~~T~~~~----------~a~el~~~~~~~~~d~IVvv-GGDGTl 179 (302)
.-|+.|.++-.. ....+ +.....|+..|+++.+-.+-... .|.++.+.+.....++|+++ ||+|+.
T Consensus 3 I~ivAPS~~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~ 80 (308)
T cd07062 3 IAVVSPSSGIPGELPHRL-ERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDSN 80 (308)
T ss_pred EEEEeCCCCCcccCHHHH-HHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCHh
Confidence 457889887542 13345 46677899999887665553222 23455555555567776664 888874
No 185
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=71.40 E-value=48 Score=29.45 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHH-HhhcCCCceEEEEcCC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVK-VLDLSKYDGIVCVSGD 176 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~-~~~~~~~d~IVvvGGD 176 (302)
..+...+++.|.++.+..+.......+... .+...+.|+|++.+.|
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~ 65 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYD 65 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 455555666666655554443322223332 2333456666666654
No 186
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=71.31 E-value=46 Score=31.72 Aligned_cols=102 Identities=18% Similarity=0.278 Sum_probs=70.8
Q ss_pred ChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCC
Q 022147 88 SEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKY 167 (302)
Q Consensus 88 ~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~ 167 (302)
|....++-+..++..+ +.-+++.+++||..-.... .. +.++..+++.|+++......+.++....++.+. .+.
T Consensus 141 D~~~v~q~i~lik~~~---Pnak~Igv~Y~p~E~ns~~--l~-eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~-g~~ 213 (322)
T COG2984 141 DLLPVAQQIELIKALL---PNAKSIGVLYNPGEANSVS--LV-EELKKEARKAGLEVVEAAVTSVNDIPRAVQALL-GKV 213 (322)
T ss_pred CcchHHHHHHHHHHhC---CCCeeEEEEeCCCCcccHH--HH-HHHHHHHHHCCCEEEEEecCcccccHHHHHHhc-CCC
Confidence 3334555566666655 4568999999996544333 33 689999999999887666667777777777665 566
Q ss_pred ceEEEEcCCchHHHHHHHHhcCccccccCCccE
Q 022147 168 DGIVCVSGDGILVEVVNGLLEREDWNDAIKVPL 200 (302)
Q Consensus 168 d~IVvvGGDGTl~evvngL~~~~~~~~~~~~pl 200 (302)
|. +.+-=|-|++..++.++.... ..++|+
T Consensus 214 d~-i~~p~dn~i~s~~~~l~~~a~---~~kiPl 242 (322)
T COG2984 214 DV-IYIPTDNLIVSAIESLLQVAN---KAKIPL 242 (322)
T ss_pred cE-EEEecchHHHHHHHHHHHHHH---HhCCCe
Confidence 65 445679999999999987532 135665
No 187
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.10 E-value=31 Score=30.41 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEec
Q 022147 130 LDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiIP 204 (302)
.+.++..++..|+++.+..+.. .....+..+.+...+.|+||+.+-|.. ..+.++.+.+. ++|+..+-
T Consensus 18 ~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~-------~ipvV~~~ 87 (267)
T cd06322 18 ANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKA-------GIPVITVD 87 (267)
T ss_pred HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHC-------CCCEEEEc
Confidence 3677888888888877665543 222345566666678999999887654 34566665443 56766663
No 188
>PRK05568 flavodoxin; Provisional
Probab=70.82 E-value=18 Score=29.34 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=44.7
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC---C-----chHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG---D-----GILV 180 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG---D-----GTl~ 180 (302)
+++++|++-. +.|..+++. +.+..-+...|++++++....... . +..++|.|+++.. . +.+.
T Consensus 1 m~~~~IvY~S--~~GnT~~~a-~~i~~~~~~~g~~v~~~~~~~~~~-----~--~~~~~d~iilgsp~y~~~~~~~~~~~ 70 (142)
T PRK05568 1 MKKINIIYWS--GTGNTEAMA-NLIAEGAKENGAEVKLLNVSEASV-----D--DVKGADVVALGSPAMGDEVLEEGEME 70 (142)
T ss_pred CCeEEEEEEC--CCchHHHHH-HHHHHHHHHCCCeEEEEECCCCCH-----H--HHHhCCEEEEECCccCcccccchhHH
Confidence 3578888865 555555554 577778888898888776554321 1 2347888887763 2 4566
Q ss_pred HHHHHHh
Q 022147 181 EVVNGLL 187 (302)
Q Consensus 181 evvngL~ 187 (302)
..++.+.
T Consensus 71 ~f~~~~~ 77 (142)
T PRK05568 71 PFVESIS 77 (142)
T ss_pred HHHHHhh
Confidence 7777664
No 189
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=70.67 E-value=16 Score=33.00 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=29.2
Q ss_pred cCCCceEEEEcCCch---------HHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 164 LSKYDGIVCVSGDGI---------LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 164 ~~~~d~IVvvGGDGT---------l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.++||+|++.||=|. +.+++....+. ..|++.|=.|.. .++.
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~-------gK~iaAIChgp~-~L~~ 142 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYAN-------GGVVAAVCHGPA-ILAN 142 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHc-------CCEEEEEChHHH-HHHh
Confidence 458999999999775 44555555544 568888888774 4443
No 190
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=70.63 E-value=42 Score=29.69 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+.+...+++.|+.+.+..+....+ ..+..+.+...+.|+|++.+++....++++.+
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~ 75 (269)
T cd06281 19 SGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDAL 75 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHH
Confidence 466666777776665555543222 23444555555677777777643223344443
No 191
>PLN02884 6-phosphofructokinase
Probab=70.12 E-value=14 Score=36.37 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=60.0
Q ss_pred cEEEEEEcCCCCCCchh--hh--HHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIAS--KI--FLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~--~~--~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.+++-+.|-+.|=-+.. .+ -.+.+..++..-|- +.-|.+ .....++++.+...+.|.+|++|||||+.-+..
T Consensus 85 ~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt---~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~ 161 (411)
T PLN02884 85 KNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGS---LLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANA 161 (411)
T ss_pred cEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCc---eeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHH
Confidence 46777777666543322 11 12456666655442 233332 223556777888789999999999999875432
Q ss_pred HHhcCccccccCCccEEEecCCChhhHHH
Q 022147 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
|.+.- .....++|+.-||.==-||+.-
T Consensus 162 -L~~~~-~~~g~~i~vIGIPkTIDNDi~~ 188 (411)
T PLN02884 162 -IHNEC-RKRKMKVSVVGVPKTIDNDILL 188 (411)
T ss_pred -HHHHH-HHcCCCceEEeccccccCCCcC
Confidence 22210 0012358999999988888864
No 192
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=70.11 E-value=71 Score=27.98 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=49.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.+++.+|..... . +... .+.++..+++.|+.+..... ....+...+++++...++|.|++++.+.....+++.+
T Consensus 136 ~~~v~iv~~~~~-~--~~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 211 (299)
T cd04509 136 WKKVAILYDDDS-Y--GRGL-LEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQA 211 (299)
T ss_pred CcEEEEEecCch-H--HHHH-HHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccchHHHHHHHHH
Confidence 567888876544 2 2222 35677888888876543222 1223455667777655678888777668888888888
Q ss_pred hcC
Q 022147 187 LER 189 (302)
Q Consensus 187 ~~~ 189 (302)
.+.
T Consensus 212 ~~~ 214 (299)
T cd04509 212 AEA 214 (299)
T ss_pred HHc
Confidence 765
No 193
>PRK05637 anthranilate synthase component II; Provisional
Probab=70.07 E-value=28 Score=30.86 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=52.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHH--HHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV--NGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv--ngL 186 (302)
++|+++|=|- .+ |...+...|+..|..++++..+.. .. ++...++|.||+.||-|...+.- ..+
T Consensus 1 ~~~il~iD~~---ds-----f~~nl~~~l~~~g~~~~v~~~~~~--~~----~l~~~~~~~iIlsgGPg~~~d~~~~~~l 66 (208)
T PRK05637 1 MTHVVLIDNH---DS-----FVYNLVDAFAVAGYKCTVFRNTVP--VE----EILAANPDLICLSPGPGHPRDAGNMMAL 66 (208)
T ss_pred CCEEEEEECC---cC-----HHHHHHHHHHHCCCcEEEEeCCCC--HH----HHHhcCCCEEEEeCCCCCHHHhhHHHHH
Confidence 3566666552 21 224577888889998888776532 22 22234789999999999998862 234
Q ss_pred hcCccccccCCccEEEecCCChhhHHHhhh
Q 022147 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTgN~~A~sL~ 216 (302)
++.. ..++|+--|=.|- =.+|..++
T Consensus 67 i~~~----~~~~PiLGIClG~-Qlla~alG 91 (208)
T PRK05637 67 IDRT----LGQIPLLGICLGF-QALLEHHG 91 (208)
T ss_pred HHHH----hCCCCEEEEcHHH-HHHHHHcC
Confidence 4321 1145655555553 34444443
No 194
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=70.03 E-value=42 Score=29.45 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=55.4
Q ss_pred EEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE-EeCCcchH-HHHHHHhhcCCCceEEEEcCCc-hHHHHHHHHhcCcc
Q 022147 115 FVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLHA-KEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLERED 191 (302)
Q Consensus 115 ivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~-~T~~~~~a-~el~~~~~~~~~d~IVvvGGDG-Tl~evvngL~~~~~ 191 (302)
|+.|..+.. -...+.+-++..++..|+.+.+. ......+. .+.++++...++|+||+..-|. .+.++++.+...
T Consensus 3 vi~~~~~~~-~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~-- 79 (257)
T PF13407_consen 3 VIVPSMDNP-FWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAA-- 79 (257)
T ss_dssp EEESSSSSH-HHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHT--
T ss_pred EEeCCCCCH-HHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhc--
Confidence 556655554 33334467888888889988875 33332221 2455666667899999998887 466888887765
Q ss_pred ccccCCccEEEecCC
Q 022147 192 WNDAIKVPLGVVPAG 206 (302)
Q Consensus 192 ~~~~~~~plgiIP~G 206 (302)
.+|+..+-.+
T Consensus 80 -----gIpvv~~d~~ 89 (257)
T PF13407_consen 80 -----GIPVVTVDSD 89 (257)
T ss_dssp -----TSEEEEESST
T ss_pred -----CceEEEEecc
Confidence 6777776444
No 195
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=69.76 E-value=21 Score=30.52 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHH------HHHHHhcCccccccCCccEEEec
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE------VVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e------vvngL~~~~~~~~~~~~plgiIP 204 (302)
..+...|++.|+++++.......+. + . +..++|+||+.||.|+..+ ++..+ . .++|+--|=
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~~--~-~--~~~~~dgvil~gG~~~~~~~~~~~~i~~~~-~-------~~~PvlGIC 78 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEITLE--E-L--ELLNPDAIVISPGPGHPEDAGISLEIIRAL-A-------GKVPILGVC 78 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCCCHH--H-H--hhcCCCEEEECCCCCCcccchhHHHHHHHH-h-------cCCCEEEEC
Confidence 4667888899998887766543221 1 1 2357999999999998643 22222 1 146766565
Q ss_pred CCChhhHHHhhhh
Q 022147 205 AGTGNGMIKSLLD 217 (302)
Q Consensus 205 ~GTgN~~A~sL~~ 217 (302)
.|- =.+|..+++
T Consensus 79 ~G~-Qlla~~~Gg 90 (184)
T cd01743 79 LGH-QAIAEAFGG 90 (184)
T ss_pred HhH-HHHHHHhCC
Confidence 554 456666643
No 196
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=69.04 E-value=28 Score=31.41 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=61.7
Q ss_pred CCCcEEEEEEcCCCC----CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc----CCCceEE-E-----
Q 022147 107 GRPKRLYIFVNPFGG----KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL----SKYDGIV-C----- 172 (302)
Q Consensus 107 ~r~~r~~vivNP~sG----~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~----~~~d~IV-v----- 172 (302)
..|+++.+|||-..= ...+...=.+.++.+|+..|+++++..--...+..+.++++.. .++|.+| +
T Consensus 5 ~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG 84 (241)
T smart00115 5 SKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHG 84 (241)
T ss_pred CCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCC
Confidence 467888888876531 1111111136889999999998887766666666666655543 2466533 2
Q ss_pred -----EcCCc---hHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 173 -----VSGDG---ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 173 -----vGGDG---Tl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.|-|| .+.++.+-+.......-..++-|-+|-+=-||.+..
T Consensus 85 ~~~~l~~~D~~~v~l~~i~~~f~~~~c~~L~~kPKlffiqACRg~~~~~ 133 (241)
T smart00115 85 EEGGIYGTDHSPLPLDEIFSLFNGDNCPSLAGKPKLFFIQACRGDELDG 133 (241)
T ss_pred CCCeEEEecCCEEEHHHHHHhccccCChhhcCCCcEEEEeCCCCCCCCC
Confidence 24455 455665555322111112356778887766665543
No 197
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=68.95 E-value=50 Score=28.87 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHh-hcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVL-DLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~-~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiI 203 (302)
+.++..+++.|+++.+..+.......+.+.++ ...++|+||+.+.+... ..+..+... ++|+..+
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-~~~~~~~~~-------~ipvV~~ 88 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTRPDD-PRVALLLER-------GFPFVTH 88 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCCCCC-hHHHHHHhc-------CCCEEEE
Confidence 56777788888887777665443333334443 33468998888765432 234444332 5566555
No 198
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=68.86 E-value=7.8 Score=41.09 Aligned_cols=101 Identities=18% Similarity=0.213 Sum_probs=58.3
Q ss_pred cEEEEEEcCCCCCCch----hhhHHHHHHHHHHhcCCcEEEEEeCC------cchHHHHHHHhhcCCCceEEEEcCCchH
Q 022147 110 KRLYIFVNPFGGKKIA----SKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a----~~~~~~~v~~~L~~ag~~~~v~~T~~------~~~a~el~~~~~~~~~d~IVvvGGDGTl 179 (302)
-+++.+.|-..|=-+. ..+-.+.+..++..-|- +.-|.+ ...-.++++.+...+.|.+|++|||||+
T Consensus 31 ~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt---~LGtsR~~~~~~~~~~~~~~~~L~~~~Id~LivIGGdgS~ 107 (745)
T TIGR02478 31 CRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGT---IIGTARCKEFRERPGRLKAARNLIKRGIDNLVVIGGDGSL 107 (745)
T ss_pred CEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCc---eecCCCCCcccCHHHHHHHHHHHHHhCCCEEEEECChhHH
Confidence 4677777766553222 11112356666665552 222221 1122456677777889999999999998
Q ss_pred HHHHH----------HHhcC-----ccccccCCccEEEecCCChhhHHH
Q 022147 180 VEVVN----------GLLER-----EDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 180 ~evvn----------gL~~~-----~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.-+.. .|.+. ...+....+++.-||.==-||+.-
T Consensus 108 ~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~g 156 (745)
T TIGR02478 108 TGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCG 156 (745)
T ss_pred HHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCC
Confidence 76531 22211 111223478999999666888884
No 199
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=68.58 E-value=41 Score=30.58 Aligned_cols=56 Identities=9% Similarity=-0.055 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCceEEEEcCCchH-HHHHHHH
Q 022147 131 DDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGL 186 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~IVvvGGDGTl-~evvngL 186 (302)
+.+...++..|+.+.+..+. ....-.+..+.+...++|+||+.+.|... .+.+..+
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~ 78 (295)
T TIGR02955 19 YGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQL 78 (295)
T ss_pred HHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHH
Confidence 46677788888887776554 22233356666666789999998876432 3444443
No 200
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=68.04 E-value=52 Score=30.71 Aligned_cols=90 Identities=12% Similarity=0.152 Sum_probs=52.0
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcC-CcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDAN-IQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVV 183 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag-~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evv 183 (302)
..++.+.++++..+.. -..++ .+.+...+++.| ..+.+..+.. .....+..+.+...++|+||+++.|.. ..+++
T Consensus 22 ~~~~~Igvv~~~~~~~-f~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~l 99 (330)
T PRK15395 22 AADTRIGVTIYKYDDN-FMSVV-RKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAPTVI 99 (330)
T ss_pred cCCceEEEEEecCcch-HHHHH-HHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHH
Confidence 4567788888543322 22222 356667777764 4444333322 122234555566678999999988865 45566
Q ss_pred HHHhcCccccccCCccEEEecC
Q 022147 184 NGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP~ 205 (302)
+.+... .+|+..+-.
T Consensus 100 ~~l~~~-------giPvV~vd~ 114 (330)
T PRK15395 100 EKARGQ-------DVPVVFFNK 114 (330)
T ss_pred HHHHHC-------CCcEEEEcC
Confidence 666554 677766643
No 201
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.76 E-value=70 Score=28.13 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchH-HHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHA-KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a-~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
+.++..++..|+.+.+..++..... .++.+.+...++|+||+.+.+.. ++++.+...
T Consensus 22 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~l~~~ 79 (268)
T cd06277 22 RAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIST--EYIKEIKEL 79 (268)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCCh--HHHHHHhhc
Confidence 5677778888887766655433211 23334454567899998886643 445555443
No 202
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=67.71 E-value=40 Score=27.65 Aligned_cols=71 Identities=10% Similarity=-0.056 Sum_probs=48.0
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
.++-|+.. .+. .+=.+-+..+|+.+|+++ +.........++++.+...+.|.|++++=|+|-.+.+..+++
T Consensus 5 v~~a~~g~-D~H--d~g~~iv~~~l~~~GfeV--i~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~ 75 (132)
T TIGR00640 5 ILVAKMGQ-DGH--DRGAKVIATAYADLGFDV--DVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRK 75 (132)
T ss_pred EEEEeeCC-Ccc--HHHHHHHHHHHHhCCcEE--EECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHH
Confidence 45556644 222 222367888999999754 445444455677777777899999999999977766666654
No 203
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=67.57 E-value=90 Score=29.08 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=52.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+|+.+++....- ++. . .+.++..|++.|+++..... ....+....++++...++|.|++.+.......+++.
T Consensus 137 ~~~~v~ii~~~~~~-g~~--~-~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~ 212 (347)
T cd06335 137 GFKKVALLLDNTGW-GRS--N-RKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPEGAQIANG 212 (347)
T ss_pred CCCeEEEEeccCch-hhh--H-HHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChHHHHHHHH
Confidence 35789999876432 232 2 35778889988987542221 123455566677766789999999888788888888
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 213 ~~~~ 216 (347)
T cd06335 213 MAKL 216 (347)
T ss_pred HHHc
Confidence 8765
No 204
>PRK05670 anthranilate synthase component II; Provisional
Probab=67.54 E-value=15 Score=31.69 Aligned_cols=78 Identities=23% Similarity=0.221 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHH--HHHHhcCccccccCCccEEEecCC
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV--VNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev--vngL~~~~~~~~~~~~plgiIP~G 206 (302)
|...+...|++.|+++++......+ ..++ +. ..+|+||+.||-|+..+. ...++..- ..++|+--|=.|
T Consensus 11 f~~~i~~~l~~~g~~~~v~~~~~~~-~~~~-~~---~~~dglIlsgGpg~~~d~~~~~~~l~~~----~~~~PvLGIClG 81 (189)
T PRK05670 11 FTYNLVQYLGELGAEVVVYRNDEIT-LEEI-EA---LNPDAIVLSPGPGTPAEAGISLELIREF----AGKVPILGVCLG 81 (189)
T ss_pred hHHHHHHHHHHCCCcEEEEECCCCC-HHHH-Hh---CCCCEEEEcCCCCChHHcchHHHHHHHh----cCCCCEEEECHH
Confidence 4467788899999998887665322 2222 22 248999999999998752 22233211 124565444444
Q ss_pred ChhhHHHhhh
Q 022147 207 TGNGMIKSLL 216 (302)
Q Consensus 207 TgN~~A~sL~ 216 (302)
- =.+|..++
T Consensus 82 ~-Qlla~alG 90 (189)
T PRK05670 82 H-QAIGEAFG 90 (189)
T ss_pred H-HHHHHHhC
Confidence 3 44555553
No 205
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=67.35 E-value=69 Score=29.57 Aligned_cols=88 Identities=11% Similarity=0.146 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
.+.+.+++ |.....--..+ .+.+...+++.|+++.+..+... ..-.++.+.+...+.|+|++.+++-+- +.+..|.
T Consensus 59 ~~~i~vi~-~~~~~~~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~-~~~~~l~ 135 (341)
T PRK10703 59 TKSIGLLA-TSSEAPYFAEI-IEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYPE-PLLAMLE 135 (341)
T ss_pred CCeEEEEe-CCCCCchHHHH-HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHH
Confidence 34555555 55433222333 35777888888988776655432 222345556666789999998876432 4556554
Q ss_pred cCccccccCCccEEEecC
Q 022147 188 EREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (302)
.. .++|+-.+-.
T Consensus 136 ~~------~~iPvV~~d~ 147 (341)
T PRK10703 136 EY------RHIPMVVMDW 147 (341)
T ss_pred hc------CCCCEEEEec
Confidence 41 1567766643
No 206
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=66.99 E-value=21 Score=32.46 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCc-EEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChh
Q 022147 131 DDVKPLLEDANIQ-FTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGN 209 (302)
Q Consensus 131 ~~v~~~L~~ag~~-~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN 209 (302)
+.+...++..+.. +...-....+.+.++++.+...+.|.|++-|-||.-.+-+..++.+= ....++|+.+.|....+
T Consensus 5 ~~l~~~~~~~~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~i--k~~~~lPvilfP~~~~~ 82 (240)
T COG1646 5 KYLLEKLDWRGKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAI--KERTDLPVILFPGSPSG 82 (240)
T ss_pred HHHHHHhhhccceEEEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHH--HhhcCCCEEEecCChhc
Confidence 3455555543332 22222222256677888888889999999999998765555554431 01248999999987744
No 207
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=66.90 E-value=18 Score=29.39 Aligned_cols=91 Identities=19% Similarity=0.209 Sum_probs=49.0
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc----hHHHHH-----HHhhcCCCceEEEEcCCchHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL----HAKEIV-----KVLDLSKYDGIVCVSGDGILV 180 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~----~a~el~-----~~~~~~~~d~IVvvGGDGTl~ 180 (302)
+|+.|++.|.. .... + ......|+.+++++.+...+... +...+. .+.....||.|++.||.+...
T Consensus 2 ~~v~ill~~g~---~~~e-~-~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~ 76 (142)
T cd03132 2 RKVGILVADGV---DAAE-L-SALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAF 76 (142)
T ss_pred CEEEEEEcCCc---CHHH-H-HHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHH
Confidence 57888887732 2222 2 35667888888887765443210 000010 111122589999999988643
Q ss_pred ---------HHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 181 ---------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 181 ---------evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+.+....++ ..+|+.|=.|+ ..+|.
T Consensus 77 ~~~~~~~l~~~l~~~~~~-------~~~I~aic~G~-~~La~ 110 (142)
T cd03132 77 ALAPSGRALHFVTEAFKH-------GKPIGAVGEGS-DLLEA 110 (142)
T ss_pred HHccChHHHHHHHHHHhc-------CCeEEEcCchH-HHHHH
Confidence 222322322 56777776666 23443
No 208
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=66.63 E-value=16 Score=31.56 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH--HHhcCccccccCCccEEEecCC
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN--GLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn--gL~~~~~~~~~~~~plgiIP~G 206 (302)
|...+..+|+..|.+++++..+. ....+ +...++|.||+.||.|...+.-. .+.+. ...++|+--|=.|
T Consensus 11 f~~nl~~~l~~~~~~~~v~~~~~-~~~~~----~~~~~~~~iilsgGP~~~~~~~~~~~~i~~----~~~~~PiLGIC~G 81 (191)
T PRK06774 11 FTYNLYQYFCELGTEVMVKRNDE-LQLTD----IEQLAPSHLVISPGPCTPNEAGISLAVIRH----FADKLPILGVCLG 81 (191)
T ss_pred hHHHHHHHHHHCCCcEEEEeCCC-CCHHH----HHhcCCCeEEEcCCCCChHhCCCchHHHHH----hcCCCCEEEECHH
Confidence 34567788888899888776542 22323 22347899999999999876511 12211 0125666655555
Q ss_pred ChhhHHHhhh
Q 022147 207 TGNGMIKSLL 216 (302)
Q Consensus 207 TgN~~A~sL~ 216 (302)
- =.+|..++
T Consensus 82 ~-Qlla~~~G 90 (191)
T PRK06774 82 H-QALGQAFG 90 (191)
T ss_pred H-HHHHHHhC
Confidence 4 34455554
No 209
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=66.25 E-value=65 Score=30.42 Aligned_cols=66 Identities=17% Similarity=0.314 Sum_probs=47.2
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEc
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvG 174 (302)
++.+-+.+|++..+..-- ..+. +.+...+++.|..+-+..+.+ ++.-.+..+.+...++|+||+.|
T Consensus 56 ~~s~~Ig~i~p~~~~~~~-~~i~-~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 56 GRTKTIGLVVPDITNPFF-AEIL-KGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCCCEEEEEeCCCCCchH-HHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 355678888875555222 2333 688899999999988888876 44444566667677899999999
No 210
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=66.05 E-value=61 Score=28.71 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHH------HHHHhcCccccccCCccEEEec
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV------VNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev------vngL~~~~~~~~~~~~plgiIP 204 (302)
..+...|.+.|+.+.+.....+. ..+. .++ ...+|+||+.||.|...+. +..+++ .++|+--|=
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~~-~~~~-~~~-~~~~dgliisGGp~~~~~~~~~~~~i~~~~~-------~~~PiLGIC 83 (214)
T PRK07765 14 FNLVQYLGQLGVEAEVWRNDDPR-LADE-AAV-AAQFDGVLLSPGPGTPERAGASIDMVRACAA-------AGTPLLGVC 83 (214)
T ss_pred HHHHHHHHHcCCcEEEEECCCcC-HHHH-HHh-hcCCCEEEECCCCCChhhcchHHHHHHHHHh-------CCCCEEEEc
Confidence 35667788889988877665422 2222 222 2469999999999987632 222222 257766666
Q ss_pred CCChhhHHHhhhh
Q 022147 205 AGTGNGMIKSLLD 217 (302)
Q Consensus 205 ~GTgN~~A~sL~~ 217 (302)
.|- =.+|..+++
T Consensus 84 ~G~-Qlla~a~GG 95 (214)
T PRK07765 84 LGH-QAIGVAFGA 95 (214)
T ss_pred cCH-HHHHHHhCC
Confidence 654 566666654
No 211
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.03 E-value=66 Score=28.81 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiI 203 (302)
+.+...+++.|+++.+..+.. + .+..+.+...+.|+|++.+-|.+- +.++.+... ++|+..+
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~--~-~~~~~~~~~~~~dgiii~~~~~~~-~~~~~~~~~-------~ipvV~~ 85 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASS--E-DSDSALVVSALVDGFIVYGVPRDD-PLVAALLRR-------GLPVVVV 85 (283)
T ss_pred HHHHHHHHHCCCEEEEecCcc--H-HHHHHHHHhcCCCEEEEeCCCCCh-HHHHHHHHc-------CCCEEEE
Confidence 567777777887777766554 2 233444555678888888776553 445555433 4565555
No 212
>CHL00101 trpG anthranilate synthase component 2
Probab=65.87 E-value=29 Score=30.02 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHH--HHHHhcCccccccCCccEEEecCCCh
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV--VNGLLEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev--vngL~~~~~~~~~~~~plgiIP~GTg 208 (302)
..+...|++.|+.+.+...... ... ++....+|+||+.||.|...+. ...+.+. -..++|+--|=.|-
T Consensus 13 ~~l~~~l~~~g~~~~v~~~~~~-~~~----~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~----~~~~~PiLGIClG~- 82 (190)
T CHL00101 13 YNLVQSLGELNSDVLVCRNDEI-DLS----KIKNLNIRHIIISPGPGHPRDSGISLDVISS----YAPYIPILGVCLGH- 82 (190)
T ss_pred HHHHHHHHhcCCCEEEEECCCC-CHH----HHhhCCCCEEEECCCCCChHHCcchHHHHHH----hcCCCcEEEEchhH-
Confidence 4577788888988887665432 222 2333479999999999998662 1122111 01256765555554
Q ss_pred hhHHHhhhh
Q 022147 209 NGMIKSLLD 217 (302)
Q Consensus 209 N~~A~sL~~ 217 (302)
=.+|..+++
T Consensus 83 Qlla~~~Gg 91 (190)
T CHL00101 83 QSIGYLFGG 91 (190)
T ss_pred HHHHHHhCC
Confidence 345555543
No 213
>PLN02335 anthranilate synthase
Probab=65.58 E-value=34 Score=30.57 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=57.7
Q ss_pred hhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHH
Q 022147 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev 182 (302)
+++..+.++++||=|-.| |...+...|++.|++++++..+.. .+.+ +...++|.||+.||-|..++.
T Consensus 12 ~~~~~~~~~ilviD~~ds--------ft~~i~~~L~~~g~~~~v~~~~~~-~~~~----~~~~~~d~iVisgGPg~p~d~ 78 (222)
T PLN02335 12 INSSKQNGPIIVIDNYDS--------FTYNLCQYMGELGCHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGTPQDS 78 (222)
T ss_pred hcccCccCcEEEEECCCC--------HHHHHHHHHHHCCCcEEEEECCCC-CHHH----HHhcCCCEEEEcCCCCChhhc
Confidence 344566778888866322 234677888889999988865422 2222 223468999999999998873
Q ss_pred ---HHHHhcCccccccCCccEEEecCCChhhHHHhhh
Q 022147 183 ---VNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 183 ---vngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~ 216 (302)
...+... ...+|+--|=.|-- .++..++
T Consensus 79 ~~~~~~~~~~-----~~~~PiLGIClG~Q-lLa~alG 109 (222)
T PLN02335 79 GISLQTVLEL-----GPLVPLFGVCMGLQ-CIGEAFG 109 (222)
T ss_pred cchHHHHHHh-----CCCCCEEEecHHHH-HHHHHhC
Confidence 1111111 12467666666653 5555553
No 214
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=65.58 E-value=50 Score=30.23 Aligned_cols=6 Identities=0% Similarity=-0.236 Sum_probs=3.0
Q ss_pred cEEEec
Q 022147 199 PLGVVP 204 (302)
Q Consensus 199 plgiIP 204 (302)
.++++.
T Consensus 121 ~i~~i~ 126 (302)
T TIGR02634 121 NYFLMG 126 (302)
T ss_pred CEEEEe
Confidence 455554
No 215
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=65.54 E-value=29 Score=31.26 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=41.5
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE-EEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT-VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~-v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
+++.+| |.|+.....+.|.++.+..|+..|+.+. +...+. +..++...+. +.|.|+ |||=-|++-
T Consensus 33 ~~i~FI--PtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~--~~~~Ie~~l~--~~d~Iy-VgGGNTF~L 98 (224)
T COG3340 33 KTIAFI--PTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP--PLAAIENKLM--KADIIY-VGGGNTFNL 98 (224)
T ss_pred ceEEEE--ecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC--CHHHHHHhhh--hccEEE-ECCchHHHH
Confidence 455544 8888888777788999999999998764 333333 3334444443 456555 555567653
No 216
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=65.46 E-value=98 Score=28.21 Aligned_cols=69 Identities=9% Similarity=0.150 Sum_probs=42.3
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCch
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
+.+.+.++++..+ ..--..++ +.+...+++.|+.+.+..+... ..-.+..+.+...+.|+||+.+.+..
T Consensus 55 ~~~~Igvi~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 55 QTRTIGMLITAST-NPFYSELV-RGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred CCCeEEEEeCCCC-CCcHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 4556777774332 22223333 5778888888988776655432 22234455555578999999987754
No 217
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.43 E-value=81 Score=27.76 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEc
Q 022147 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvG 174 (302)
..+...+++.|+.+.+..+... +.-.++.+.+...++|+|++.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 63 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFIS 63 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 4555666666655544443321 1222344455445666666665
No 218
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=65.42 E-value=37 Score=28.45 Aligned_cols=43 Identities=9% Similarity=0.136 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
.++.++......|++++.+.|.+.++..+...+... .+|+||+
T Consensus 30 i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~-~~dgiII 72 (140)
T PF01220_consen 30 IEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARD-DVDGIII 72 (140)
T ss_dssp HHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTC-TTSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHh-hCCEEEE
Confidence 446677777788999999999999998888877654 4888774
No 219
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=65.37 E-value=92 Score=28.93 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=53.1
Q ss_pred HHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHh--cCCcEEEEEe--CCc-chHHHHHHHhhcCCCceE
Q 022147 96 CEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLED--ANIQFTVQET--TQQ-LHAKEIVKVLDLSKYDGI 170 (302)
Q Consensus 96 ~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~--ag~~~~v~~T--~~~-~~a~el~~~~~~~~~d~I 170 (302)
...+-+++......+++.+|... ..-++. .. +.++..+++ .|+++..... ... .+...++.++...++|.|
T Consensus 130 ~~~l~~~~~~~~~~k~v~i~~~~-~~~g~~--~~-~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v 205 (342)
T cd06329 130 MEALASYIKKQPDGKKVYLINQD-YSWGQD--VA-AAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTV 205 (342)
T ss_pred HHHHHHHHHhcccCceEEEEeCC-hHHHHH--HH-HHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEE
Confidence 33444444333346778776532 322332 33 577888998 8876543221 122 344556667766789998
Q ss_pred EEEcCCchHHHHHHHHhcC
Q 022147 171 VCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 171 VvvGGDGTl~evvngL~~~ 189 (302)
++++..+..-.++..+...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~ 224 (342)
T cd06329 206 ITGNWGNDLLLLVKQAADA 224 (342)
T ss_pred EEcccCchHHHHHHHHHHc
Confidence 8877555566777877665
No 220
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=65.28 E-value=86 Score=26.67 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=44.4
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
...+++.++-.+.--.+ + ..+..+| |+++..+..++.++.....+++...++|+|| |+|+..+.++.
T Consensus 75 ~~~~~Iavv~~~~~~~~-----~-~~~~~ll---~~~i~~~~~~~~~e~~~~i~~~~~~G~~viV---Gg~~~~~~A~~ 141 (176)
T PF06506_consen 75 KYGPKIAVVGYPNIIPG-----L-ESIEELL---GVDIKIYPYDSEEEIEAAIKQAKAEGVDVIV---GGGVVCRLARK 141 (176)
T ss_dssp CCTSEEEEEEESS-SCC-----H-HHHHHHH---T-EEEEEEESSHHHHHHHHHHHHHTT--EEE---ESHHHHHHHHH
T ss_pred hcCCcEEEEecccccHH-----H-HHHHHHh---CCceEEEEECCHHHHHHHHHHHHHcCCcEEE---CCHHHHHHHHH
Confidence 34578888877654432 2 4566777 6788888888999999999998888888776 44455555543
No 221
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=64.68 E-value=37 Score=27.69 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC----------------cchHHHHHHHhhcCCCceEEEE
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------------QLHAKEIVKVLDLSKYDGIVCV 173 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~----------------~~~a~el~~~~~~~~~d~IVvv 173 (302)
||+++|.=...-.+...++. +.+...++..|++++++.... .++..++.+++. ..|.||++
T Consensus 1 Mkilii~gS~r~~~~t~~l~-~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~--~aD~iI~~ 77 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLA-EAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLK--EADGIIFA 77 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHH-HHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHH--HSSEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHH-HHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhcee--cCCeEEEe
Confidence 46666652222334555444 688899998899888876554 223344555543 46777766
Q ss_pred cC--CchHHHHHHHHhcCcc---ccccCCccEEEecCC
Q 022147 174 SG--DGILVEVVNGLLERED---WNDAIKVPLGVVPAG 206 (302)
Q Consensus 174 GG--DGTl~evvngL~~~~~---~~~~~~~plgiIP~G 206 (302)
.= -|.++..+..++++-. .......+++++-.|
T Consensus 78 sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 78 SPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp EEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred ecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 53 4555555555555432 222335666666443
No 222
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=64.38 E-value=51 Score=31.50 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIV 171 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IV 171 (302)
.+++.......+.+....+++.||++..+|++.-. +. +.++.+++++|.++-++.....+-++ + +.....|..|
T Consensus 215 ~~~~l~rR~~~I~ka~~A~~vGIlvgTl~~q~~~~-~~-~~l~~ll~~~gkk~y~i~~~~in~~k-L---~nf~eiD~fV 288 (332)
T TIGR00322 215 AKQFVKVRALAISKARKGKKFGVVLSSKGGQGRLR-LA-KNLKKNLEEAGKTVLIILLSNVSPAK-L---LMFDQIDVFV 288 (332)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEecCccCCCHH-HH-HHHHHHHHHcCCcEEEEEeCCCCHHH-H---hCCCCcCEEE
Confidence 44454443334555556689999999999988765 45 68999999999998887777766432 1 2223577777
Q ss_pred EEc
Q 022147 172 CVS 174 (302)
Q Consensus 172 vvG 174 (302)
.+|
T Consensus 289 ~~a 291 (332)
T TIGR00322 289 QVA 291 (332)
T ss_pred Eec
Confidence 554
No 223
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=64.16 E-value=12 Score=31.85 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=27.2
Q ss_pred CCceEEEEcCCchH--------HHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 166 KYDGIVCVSGDGIL--------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 166 ~~d~IVvvGGDGTl--------~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
.||.|++.||.++. .+.+....++ ..+|+.|-.|+. .+|..
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~-------~k~i~~ic~G~~-~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEA-------NKPVAAICHGPQ-ILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHc-------CCEEEEECcHHH-HHHHc
Confidence 68999999997743 2233333332 679999998885 45544
No 224
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=63.90 E-value=46 Score=29.41 Aligned_cols=29 Identities=17% Similarity=0.055 Sum_probs=15.2
Q ss_pred HHhhcCCCceEEEEcCCch-HHHHHHHHhc
Q 022147 160 KVLDLSKYDGIVCVSGDGI-LVEVVNGLLE 188 (302)
Q Consensus 160 ~~~~~~~~d~IVvvGGDGT-l~evvngL~~ 188 (302)
+.+...++|+||+.+.|.. ..+++..+.+
T Consensus 51 ~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~ 80 (271)
T cd06321 51 DNFIAAKVDLILLNAVDSKGIAPAVKRAQA 80 (271)
T ss_pred HHHHHhCCCEEEEeCCChhHhHHHHHHHHH
Confidence 3333456677776666543 3445554443
No 225
>PRK09267 flavodoxin FldA; Validated
Probab=63.66 E-value=34 Score=28.75 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=43.8
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNG 185 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~evvng 185 (302)
+++++|++-. ..|..+++. +.+...|... .+++...+... . . +..+||.||++. ++|-....+..
T Consensus 1 mmki~IiY~S--~tGnT~~vA-~~Ia~~l~~~--~~~~~~~~~~~-~----~--~l~~~d~vi~g~pt~~~G~~~~~~~~ 68 (169)
T PRK09267 1 MAKIGIFFGS--DTGNTEDIA-KMIQKKLGKD--VADVVDIAKAS-K----E--DFEAYDLLILGIPTWGYGELQCDWDD 68 (169)
T ss_pred CCeEEEEEEC--CCChHHHHH-HHHHHHhCCC--ceEEEEhhhCC-H----h--hHhhCCEEEEEecCcCCCCCCHHHHH
Confidence 3588999955 455555544 5677777532 34444333221 1 1 234688866662 45654443333
Q ss_pred HhcCccccccCCccEEEecCC
Q 022147 186 LLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~G 206 (302)
++..-........+++++-+|
T Consensus 69 fl~~~~~~~l~~k~vaifg~g 89 (169)
T PRK09267 69 FLPELEEIDFSGKKVALFGLG 89 (169)
T ss_pred HHHHHhcCCCCCCEEEEEecC
Confidence 322100011235788888655
No 226
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=63.65 E-value=74 Score=27.77 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCch
Q 022147 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
+.+...++..|+.+.+..+.... ...++.+.+...+.|+|++.+-|-+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 67 (268)
T cd01575 19 QGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT 67 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 34555555566555554443211 1123444444455666666665543
No 227
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=63.33 E-value=62 Score=28.60 Aligned_cols=67 Identities=9% Similarity=0.196 Sum_probs=40.9
Q ss_pred HHHHHHHHhc-CCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEec
Q 022147 131 DDVKPLLEDA-NIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 131 ~~v~~~L~~a-g~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiIP 204 (302)
+.+...+... |+.+.+..+.. ...-.+..+.+...++|+||+.+.|-. ..+.+..+... ++|+..+-
T Consensus 19 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~-------~ipvV~~~ 88 (270)
T cd06308 19 DEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRA-------GIPVILLD 88 (270)
T ss_pred HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHHC-------CCCEEEeC
Confidence 5666777775 77776654432 222234455555568999999987743 34566665443 67776663
No 228
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=63.25 E-value=55 Score=28.63 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCcccc-----ccCCccEEEecC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWN-----DAIKVPLGVVPA 205 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~-----~~~~~plgiIP~ 205 (302)
+.....|+..|++......-....-.++.+.+ ...|.|++.|||=. ..++.+.+++-.+ .....+++-..+
T Consensus 47 ~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l--~~ad~I~~~GG~~~--~~~~~l~~t~~~~~i~~~~~~G~v~~G~SA 122 (210)
T cd03129 47 EEYRAAFERLGVEVVHLLLIDTANDPDVVARL--LEADGIFVGGGNQL--RLLSVLRETPLLDAILKRVARGVVIGGTSA 122 (210)
T ss_pred HHHHHHHHHcCCceEEEeccCCCCCHHHHHHH--hhCCEEEEcCCcHH--HHHHHHHhCChHHHHHHHHHcCCeEEEcCH
Confidence 56778888889876544332211223344444 36799999998853 3333333221000 012567777777
Q ss_pred CChhhHH
Q 022147 206 GTGNGMI 212 (302)
Q Consensus 206 GTgN~~A 212 (302)
|+....-
T Consensus 123 GA~~~~~ 129 (210)
T cd03129 123 GAAVMGE 129 (210)
T ss_pred HHHHhhh
Confidence 7644443
No 229
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=63.00 E-value=80 Score=27.53 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=5.4
Q ss_pred CCCceEEEEcCC
Q 022147 165 SKYDGIVCVSGD 176 (302)
Q Consensus 165 ~~~d~IVvvGGD 176 (302)
.++|+|++.+.|
T Consensus 54 ~~~dgiii~~~~ 65 (267)
T cd06283 54 YQVDGLIVNPTG 65 (267)
T ss_pred cCcCEEEEeCCC
Confidence 344444444443
No 230
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=62.92 E-value=49 Score=29.33 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEec
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiIP 204 (302)
+.+...+++.|+++.+..+.+..+ -.++.+.+...++|+||+.+.+.. +.+.++.+.+. .+|+-.+-
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~-------~iPvV~~~ 87 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAA-------GIPVILVD 87 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHC-------CCCEEEEe
Confidence 577888888888877765543222 224556666678999999887754 35666666554 56665553
No 231
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=62.91 E-value=86 Score=27.95 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG 175 (302)
+.+...+++.|+++.+..+.+..+..+..+.+...++|+||+.+-
T Consensus 22 ~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 22 EGLERAAKELGIEYKYVESKSDADYEPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEEcCc
Confidence 567778888888777765554444445566666678899888864
No 232
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=62.89 E-value=65 Score=29.41 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCc-EEEEEeCCcchH--HHHHHHhhcCCCceEEEEcCC
Q 022147 131 DDVKPLLEDANIQ-FTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 131 ~~v~~~L~~ag~~-~~v~~T~~~~~a--~el~~~~~~~~~d~IVvvGGD 176 (302)
+.....|+..|++ +++....+.+.+ .+..+.+ ...|.|++.|||
T Consensus 46 ~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l--~~ad~I~~~GGn 92 (250)
T TIGR02069 46 ERYITIFSRLGVKEVKILDVREREDASDENAIALL--SNATGIFFTGGD 92 (250)
T ss_pred HHHHHHHHHcCCceeEEEecCChHHccCHHHHHHH--hhCCEEEEeCCC
Confidence 5777889999984 565555443333 2333443 368999999999
No 233
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=61.98 E-value=1.1e+02 Score=27.88 Aligned_cols=67 Identities=10% Similarity=0.217 Sum_probs=37.6
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCC
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGD 176 (302)
+.+.+.|++ |.-...--..++ +.+...+++.|..+.+..+... +.-.++.+.+...+.|+||+++.+
T Consensus 58 ~~~~Igvv~-~~~~~~f~~~l~-~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 125 (329)
T TIGR01481 58 RTTTVGVII-PDISNIYYAELA-RGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGT 125 (329)
T ss_pred CCCEEEEEe-CCCCchhHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 445666666 432222222233 4666777888877766544322 222344455555689999998754
No 234
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=61.95 E-value=69 Score=29.11 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCcEEEE-EeC-CcchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDANIQFTVQ-ETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~-~T~-~~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiI 203 (302)
+.++..+++.|+.+.+. .+. .+....+..+.+...++|+||+.+.|-. +.+.++.+... .+|+..+
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~v 87 (298)
T cd06302 19 EGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAREA-------GIKVVTH 87 (298)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHHC-------CCeEEEE
Confidence 57778888888887764 333 2233334555555568999999987744 34556665443 5676655
No 235
>PRK05569 flavodoxin; Provisional
Probab=61.89 E-value=32 Score=27.82 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=42.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC---Cc-h----HHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG---DG-I----LVE 181 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG---DG-T----l~e 181 (302)
+++++|+= |+.|..+++. +.+..-++..|.+++++....... . +..++|.|+++.. .| + +-.
T Consensus 2 ~ki~iiY~--S~tGnT~~iA-~~i~~~~~~~g~~v~~~~~~~~~~-----~--~~~~~d~iilgsPty~~~~~~~~~~~~ 71 (141)
T PRK05569 2 KKVSIIYW--SCGGNVEVLA-NTIADGAKEAGAEVTIKHVADAKV-----E--DVLEADAVAFGSPSMDNNNIEQEEMAP 71 (141)
T ss_pred CeEEEEEE--CCCCHHHHHH-HHHHHHHHhCCCeEEEEECCcCCH-----H--HHhhCCEEEEECCCcCCCcCChHHHHH
Confidence 57777774 3455666554 578888888888877765544321 1 2347899888873 33 2 566
Q ss_pred HHHHHh
Q 022147 182 VVNGLL 187 (302)
Q Consensus 182 vvngL~ 187 (302)
+++.+.
T Consensus 72 ~~~~l~ 77 (141)
T PRK05569 72 FLDQFK 77 (141)
T ss_pred HHHHhh
Confidence 666653
No 236
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=61.75 E-value=39 Score=29.14 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=37.8
Q ss_pred HHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q 022147 97 EKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL 153 (302)
Q Consensus 97 ~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~ 153 (302)
+.|+..|.-..+.+|+..|.++++|-|+.. ....+...|...|.++-++......
T Consensus 4 ~~l~~~l~~~~~~~kvI~v~s~kgG~GKTt--~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 4 NAIRTNIQFSGAEIKVLLITSVKPGEGKST--TSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred HHHHHHHhhhcCCCcEEEEecCCCCCCHHH--HHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 344444443334478899999999998875 2357778899899887776665443
No 237
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=61.74 E-value=11 Score=29.39 Aligned_cols=26 Identities=19% Similarity=0.595 Sum_probs=23.4
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhhh
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
.+.|.|.++++++.+.|+++|+..+.
T Consensus 76 ~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 57899999999999999999998774
No 238
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=61.71 E-value=94 Score=27.12 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCcEEEEEeCCc--chHHHHHHHhhcCCCceEEEEcCCch
Q 022147 131 DDVKPLLEDANIQFTVQETTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~--~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
+.++..+++.|+.+.+..++.. ....++.+.+...+.|+|++.+-+-.
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 68 (264)
T cd01574 19 AAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPLDD 68 (264)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 5777778877877777766532 22344555665567888888776543
No 239
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.67 E-value=1.2e+02 Score=26.70 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=20.4
Q ss_pred HHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEc
Q 022147 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvG 174 (302)
+.+...+++.|+++.+..+.. .....++.+.+...++|+||+.+
T Consensus 19 ~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~ 63 (269)
T cd06293 19 DAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVT 63 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeC
Confidence 345555555555554443332 11122334444444566666654
No 240
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=60.55 E-value=1.8e+02 Score=28.65 Aligned_cols=74 Identities=22% Similarity=0.339 Sum_probs=46.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhc--CCcEEEEEeCCcch--HHHHHHHhh---cCCCceEEEEcCCchHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQETTQQLH--AKEIVKVLD---LSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~a--g~~~~v~~T~~~~~--a~el~~~~~---~~~~d~IVvvGGDGTl~e 181 (302)
|+++.||-.|. +.|.+ .+...+... .+++.++.+.-.|+ +.++++.+. ..++|+||++=|=|.+-+
T Consensus 135 p~~I~viTs~~---gAa~~----D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eD 207 (438)
T PRK00286 135 PKRIGVITSPT---GAAIR----DILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLED 207 (438)
T ss_pred CCEEEEEeCCc---cHHHH----HHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHH
Confidence 78999998773 34432 333344433 25677777765544 345665543 223799999999998776
Q ss_pred H--------HHHHhcC
Q 022147 182 V--------VNGLLER 189 (302)
Q Consensus 182 v--------vngL~~~ 189 (302)
. +..++..
T Consensus 208 L~~Fn~e~v~~ai~~~ 223 (438)
T PRK00286 208 LWAFNDEAVARAIAAS 223 (438)
T ss_pred hhccCcHHHHHHHHcC
Confidence 3 5555554
No 241
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=60.19 E-value=31 Score=28.60 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCchHH--------HHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 165 SKYDGIVCVSGDGILV--------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 165 ~~~d~IVvvGGDGTl~--------evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
..||.|++.||.+.-. +.+..+.. ...+|+-|=.|+ --+|+
T Consensus 59 ~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~-------~~~~i~~ic~G~-~~La~ 107 (166)
T TIGR01382 59 EEYDALVIPGGRAPEYLRLNNKAVRLVREFVE-------KGKPVAAICHGP-QLLIS 107 (166)
T ss_pred HHCcEEEECCCCCHHHhccCHHHHHHHHHHHH-------cCCEEEEEChHH-HHHHh
Confidence 3589999999988432 22222222 257888777776 33443
No 242
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=59.89 E-value=44 Score=27.85 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhc-CCCceEEEEcCCch
Q 022147 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI 178 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~-~~~d~IVvvGGDGT 178 (302)
..++.+|++.|+++.... .+.++...+..+++.. .++|.||+.||=|.
T Consensus 23 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~ 73 (152)
T cd00886 23 PALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGL 73 (152)
T ss_pred HHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 468889999998754433 3333333343333322 27999999999653
No 243
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=59.86 E-value=21 Score=31.95 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=31.6
Q ss_pred HhhcCCCceEEEEcCCchH---------------HHHHHHHhcCccccccCCccEEEecCCChhhHHHhh
Q 022147 161 VLDLSKYDGIVCVSGDGIL---------------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 161 ~~~~~~~d~IVvvGGDGTl---------------~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
++....||.|++.||.|.. ++.+..+++.- .....|++.|=.|. -.+++.+
T Consensus 77 ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f---~~~gK~VaAIChgp-~~L~~~~ 142 (213)
T cd03133 77 KLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREF---HQAGKPIGAICIAP-ALAAKIL 142 (213)
T ss_pred HCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHH---HHCCCeEEEECHHH-HHHHHHh
Confidence 3344579999999998852 23333333221 01267999998888 4566655
No 244
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=59.79 E-value=21 Score=30.66 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=59.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC--CchHHHHHHHHh
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG--DGILVEVVNGLL 187 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG--DGTl~evvngL~ 187 (302)
+|.+|++...-| +..++. +.+...|.+.|+++++..... + .+++..+||.||+..- -|=.|+.++..+
T Consensus 1 Mk~LIlYstr~G--qT~kIA-~~iA~~L~e~g~qvdi~dl~~------~-~~~~l~~ydavVIgAsI~~~h~~~~~~~Fv 70 (175)
T COG4635 1 MKTLILYSTRDG--QTRKIA-EYIASHLRESGIQVDIQDLHA------V-EEPALEDYDAVVIGASIRYGHFHEAVQSFV 70 (175)
T ss_pred CceEEEEecCCC--cHHHHH-HHHHHHhhhcCCeeeeeehhh------h-hccChhhCceEEEecchhhhhhHHHHHHHH
Confidence 478888877655 445555 688899999999998764332 2 2356678999887553 466788888776
Q ss_pred cCccccccCCccEEEecCCChhhHHHh
Q 022147 188 EREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
.+.. +.....|.+++.. |-+|+.
T Consensus 71 ~k~~-e~L~~kP~A~f~v---nl~a~k 93 (175)
T COG4635 71 KKHA-EALSTKPSAFFSV---NLTARK 93 (175)
T ss_pred HHHH-HHHhcCCceEEEe---ehhhcc
Confidence 6531 2233567777755 444443
No 245
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=59.79 E-value=1.2e+02 Score=27.06 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=33.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV 159 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~ 159 (302)
+++..|.|.++|-||.-- .-.+.-.|...|.++-++-.+..+.+....
T Consensus 1 M~iI~v~n~KGGvGKTT~--a~nLA~~la~~G~~VlliD~DpQ~s~~~w~ 48 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTA--LMGLCAALASDGKRVALFEADENRPLTRWK 48 (231)
T ss_pred CeEEEEECCCCCccHHHH--HHHHHHHHHhCCCcEEEEeCCCCCCHHHHH
Confidence 357788899988888752 246677788888777777776666655444
No 246
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=59.43 E-value=1e+02 Score=27.10 Aligned_cols=47 Identities=9% Similarity=0.222 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCc
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDG 177 (302)
+.+...+++.|+.+.+..++...+ ..+..+++...++|+||+.+.+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~ 66 (273)
T cd01541 19 RGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKS 66 (273)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 345555555555554443332111 12333444445566666655543
No 247
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=59.16 E-value=1.1e+02 Score=27.82 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=49.6
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC--cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~--~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+++.+|..... -+.. .. +.++..++..|+++.....-. ..+...+++++...++|.|+..+.......++..
T Consensus 134 ~~~~v~~v~~~~~-~g~~--~~-~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~~vi~~~~~~~~~~~~~~ 209 (334)
T cd06342 134 KAKKVAIIDDKTA-YGQG--LA-DEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGGYYPEAGPLVRQ 209 (334)
T ss_pred CCCEEEEEeCCcc-hhhH--HH-HHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcCcchhHHHHHHH
Confidence 4578888875542 2322 22 577888888888765443222 2445566677776788988877765566667777
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 210 ~~~~ 213 (334)
T cd06342 210 MRQL 213 (334)
T ss_pred HHHc
Confidence 6654
No 248
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=59.16 E-value=1e+02 Score=26.90 Aligned_cols=15 Identities=0% Similarity=0.277 Sum_probs=6.9
Q ss_pred HHHHHHHhcCCcEEE
Q 022147 132 DVKPLLEDANIQFTV 146 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v 146 (302)
.++..++..|+++.+
T Consensus 25 ~~~~~~~~~g~~~~~ 39 (270)
T cd06294 25 GISAVANENGYDISL 39 (270)
T ss_pred HHHHHHHHCCCEEEE
Confidence 444444445544433
No 249
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=59.15 E-value=1e+02 Score=28.27 Aligned_cols=86 Identities=6% Similarity=0.116 Sum_probs=48.3
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+.+.+.+++...+..- -..++ +.+...+++.|+.+.+..+.... ...+..+.+...+.|+||+.+-+.. .+.++.+
T Consensus 62 ~~~~Igvi~~~~~~~~-~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~~~~-~~~~~~l 138 (331)
T PRK14987 62 TSRAIGVLLPSLTNQV-FAEVL-RGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERTHT-PRTLKMI 138 (331)
T ss_pred CCCEEEEEeCCCcchh-HHHHH-HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC-HHHHHHH
Confidence 4456777774332211 12233 56777888888777665444222 2234445555578999999875533 3555555
Q ss_pred hcCccccccCCccEEEe
Q 022147 187 LEREDWNDAIKVPLGVV 203 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiI 203 (302)
... ++|+..+
T Consensus 139 ~~~-------~iPvV~~ 148 (331)
T PRK14987 139 EVA-------GIPVVEL 148 (331)
T ss_pred HhC-------CCCEEEE
Confidence 443 5666544
No 250
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=58.77 E-value=78 Score=28.00 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=41.8
Q ss_pred HHHHHHHHhc-----CCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDA-----NIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~a-----g~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiI 203 (302)
+.++..+++. |+.+.+..+.... ...++.+.+...++|+|++.+.|.+ +.+.++.+.+. .+|+..+
T Consensus 19 ~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~~-------gIpvV~~ 91 (274)
T cd06311 19 WHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKAKKA-------GIFVVVV 91 (274)
T ss_pred HHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHC-------CCeEEEE
Confidence 4566666665 4555444443222 2224455555568999999998865 45677766554 6787777
Q ss_pred cCC
Q 022147 204 PAG 206 (302)
Q Consensus 204 P~G 206 (302)
-.+
T Consensus 92 d~~ 94 (274)
T cd06311 92 DRG 94 (274)
T ss_pred cCC
Confidence 554
No 251
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=58.76 E-value=16 Score=31.04 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=33.3
Q ss_pred chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 153 ~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
..|.++.+.+...++ .||.-|+.|..-.+.++.++.. ...+|++|.+-
T Consensus 18 ~~A~~lg~~La~~g~-~lv~Gg~~GlM~a~a~ga~~~g------g~viGVlp~~l 65 (159)
T TIGR00725 18 EIAYRLGKELAKKGH-ILINGGRTGVMEAVSKGAREAG------GLVVGILPDED 65 (159)
T ss_pred HHHHHHHHHHHHCCC-EEEcCCchhHHHHHHHHHHHCC------CeEEEECChhh
Confidence 346677777776665 5666566777777777777653 56899999764
No 252
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=58.47 E-value=1.5e+02 Score=27.67 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=49.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+++.+|+.. ..-++ .. .+.++..++++|+++..... ....+...++.++...++|.|++.+..+....++..
T Consensus 143 g~~~v~ii~~~-~~~g~--~~-~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~ 218 (362)
T cd06343 143 PNAKIAVLYQN-DDFGK--DY-LKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRK 218 (362)
T ss_pred CCceEEEEEec-cHHHH--HH-HHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHH
Confidence 35788877643 22222 22 36778889999987543222 222234455666666789999988877777778888
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 219 ~~~~ 222 (362)
T cd06343 219 AAEL 222 (362)
T ss_pred HHHc
Confidence 8665
No 253
>PTZ00287 6-phosphofructokinase; Provisional
Probab=58.44 E-value=17 Score=40.94 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=37.6
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.-.+..+.+...+.|++|++|||||+..+. .|.+.-. ....++.+.-||.=--||+..
T Consensus 916 ~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~-~LaE~f~-~~gi~i~VIGVPkTIDNDL~~ 973 (1419)
T PTZ00287 916 NRNKVCETVTNLQLNGLVMPGSNVTITEAA-LLAEYFL-EKKIPTSVVGIPLTGSNNLIH 973 (1419)
T ss_pred HHHHHHHHHHHhCCCEEEEECCchHHHHHH-HHHHHHH-hcCCCccEEEeCceeeCCCCC
Confidence 344555666667899999999999987653 2322100 001244488889887899875
No 254
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=58.38 E-value=1.7e+02 Score=27.82 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=48.5
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+++.+|+.... -++ .. .+.++..+++.|.++.... .....+....+.++...++|.|++.|....+-.+++.
T Consensus 160 ~~k~va~i~~d~~-~g~--~~-~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~~~~~~~~~~~~k~ 235 (369)
T PRK15404 160 KPKRIAVLHDKQQ-YGE--GL-ARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQ 235 (369)
T ss_pred CCCEEEEEeCCCc-hhH--HH-HHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEECCCchHHHHHHHH
Confidence 4578888876543 222 22 3577888999998764322 1223345556666666789988776655556667776
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+...
T Consensus 236 ~~~~ 239 (369)
T PRK15404 236 AREA 239 (369)
T ss_pred HHHC
Confidence 6554
No 255
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=58.36 E-value=30 Score=35.45 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=59.8
Q ss_pred CCcEEEEEEcCCCCCCch--hhhHHHHHHHHHHhcCCcEEEEEe-----CCcchHHHHHHHhhcCCCceEEEEcCCchHH
Q 022147 108 RPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQET-----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a--~~~~~~~v~~~L~~ag~~~~v~~T-----~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ 180 (302)
...+++-+.|-..|=-+. ..+-...+..+...-|.++ .-| +..++-..+.+.+...+.|.+|++|||||..
T Consensus 103 ~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~--LGs~R~k~~~~e~~~~i~~~l~~~~Id~LviIGGddS~~ 180 (550)
T cd00765 103 KGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDM--ICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNT 180 (550)
T ss_pred CCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhh--hcCcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHH
Confidence 345788888855543221 1122235555555545311 111 2334455666667777899999999999986
Q ss_pred HHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 181 EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
.+.. |.+.-. +...++++.-||.==-||+..+
T Consensus 181 ~A~~-Lae~~~-~~g~~i~VIGVPKTIDNDl~~t 212 (550)
T cd00765 181 NAAL-LAENFR-SKGLKTRVIGVPKTIDGDLKNK 212 (550)
T ss_pred HHHH-HHHHHH-hcCCCceEEEEeeeecCCCCCC
Confidence 5432 222100 0123688899998888998864
No 256
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=58.27 E-value=1.2e+02 Score=26.47 Aligned_cols=9 Identities=22% Similarity=0.914 Sum_probs=4.0
Q ss_pred CCceEEEEc
Q 022147 166 KYDGIVCVS 174 (302)
Q Consensus 166 ~~d~IVvvG 174 (302)
++|+||+.+
T Consensus 51 ~vdgii~~~ 59 (261)
T cd06272 51 RFDGVIIFG 59 (261)
T ss_pred CcCEEEEeC
Confidence 444444443
No 257
>PRK09701 D-allose transporter subunit; Provisional
Probab=58.11 E-value=98 Score=28.43 Aligned_cols=87 Identities=9% Similarity=0.093 Sum_probs=51.8
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc---hHHHHHHHhhcCCCceEEEEcCCch-HHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL---HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~---~a~el~~~~~~~~~d~IVvvGGDGT-l~evvn 184 (302)
...+.+|+ |.....--.. +.+.+...+++.|+.+.+..+...+ +..+..+.+...++|+||+.+.|.. ..+.+.
T Consensus 24 ~~~Igvi~-~~~~~~f~~~-~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~ 101 (311)
T PRK09701 24 AAEYAVVL-KTLSNPFWVD-MKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVA 101 (311)
T ss_pred CCeEEEEe-CCCCCHHHHH-HHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 34677776 3322222222 3357778888888887766443222 2334556666678999999998853 334555
Q ss_pred HHhcCccccccCCccEEEec
Q 022147 185 GLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP 204 (302)
.+... ++|+..+-
T Consensus 102 ~~~~~-------giPvV~~~ 114 (311)
T PRK09701 102 RAWKK-------GIYLVNLD 114 (311)
T ss_pred HHHHC-------CCcEEEeC
Confidence 55443 57776663
No 258
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=58.02 E-value=25 Score=34.48 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=22.0
Q ss_pred HHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 156 ~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.++.+.+. ...|.+|+.|||-|+..+-.-+
T Consensus 159 ~~~~~~~~-~~~D~vv~wGgd~ti~~ir~~~ 188 (399)
T PF05893_consen 159 EELEEALS-QQADAVVAWGGDETIRAIRQPL 188 (399)
T ss_pred hHHHHHHH-HHCCEEEEeCCHHHHHHHHHHc
Confidence 34444443 4689999999999999988744
No 259
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=57.77 E-value=1.5e+02 Score=27.02 Aligned_cols=77 Identities=8% Similarity=0.029 Sum_probs=49.3
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.+++.++.+..+ -++. .. +.++..|++.|+++.... .....+...++.++...++|.|++++...-...+++.+
T Consensus 134 ~~~v~~l~~~~~-~g~~--~~-~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~~~~~~~~~~~~~~ 209 (336)
T cd06360 134 YKKVVTVAWDYA-FGYE--VV-EGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFAGGDAIKFVKQY 209 (336)
T ss_pred CCeEEEEeccch-hhHH--HH-HHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEecccccHHHHHHHH
Confidence 578888876443 2222 22 467788998898764322 22345556667777777899998876655566677777
Q ss_pred hcC
Q 022147 187 LER 189 (302)
Q Consensus 187 ~~~ 189 (302)
...
T Consensus 210 ~~~ 212 (336)
T cd06360 210 DAA 212 (336)
T ss_pred HHc
Confidence 554
No 260
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=57.62 E-value=47 Score=28.31 Aligned_cols=71 Identities=23% Similarity=0.173 Sum_probs=44.4
Q ss_pred HHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHH------HHHHHhcCccccccCCccEEEecCC
Q 022147 133 VKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE------VVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 133 v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e------vvngL~~~~~~~~~~~~plgiIP~G 206 (302)
+...|+.+|..+.++..+.. .. ++....+|+||+.||.|...+ +++.++++ +.|+.-|=.|
T Consensus 12 ~~~~l~~~G~~~~~~~~~~~--~~----~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~-------~~PvlGIC~G 78 (178)
T cd01744 12 ILRELLKRGCEVTVVPYNTD--AE----EILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGK-------KIPIFGICLG 78 (178)
T ss_pred HHHHHHHCCCeEEEEECCCC--HH----HHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhC-------CCCEEEECHH
Confidence 46678888988877655432 21 223347999999999876544 33333333 5677777666
Q ss_pred ChhhHHHhhhh
Q 022147 207 TGNGMIKSLLD 217 (302)
Q Consensus 207 TgN~~A~sL~~ 217 (302)
- -.++..+++
T Consensus 79 ~-Q~l~~~~Gg 88 (178)
T cd01744 79 H-QLLALALGA 88 (178)
T ss_pred H-HHHHHHcCC
Confidence 5 566666643
No 261
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=57.41 E-value=1.2e+02 Score=26.18 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcC----
Q 022147 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS---- 165 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~---- 165 (302)
++...|.+.+++.. ..++++|+=|.. |+..-. -. ..++.+-+..|+.+-.+.+..|+-..++.+-+...
T Consensus 62 ~~~~~~~~~l~~~~----~~~~v~IvSNsa-Gs~~d~-~~-~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~~~~~ 134 (168)
T PF09419_consen 62 PEYAEWLNELKKQF----GKDRVLIVSNSA-GSSDDP-DG-ERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQKVVT 134 (168)
T ss_pred HHHHHHHHHHHHHC----CCCeEEEEECCC-CcccCc-cH-HHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhccCCC
Confidence 46777888776543 334788888864 444321 12 45556556667887667777887666666655422
Q ss_pred CCceEEEEcCCchHHHHHHHH
Q 022147 166 KYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 166 ~~d~IVvvGGDGTl~evvngL 186 (302)
.++-++++ ||=.+-+|+-|=
T Consensus 135 ~p~eiavI-GDrl~TDVl~gN 154 (168)
T PF09419_consen 135 SPSEIAVI-GDRLFTDVLMGN 154 (168)
T ss_pred CchhEEEE-cchHHHHHHHhh
Confidence 35555555 587777776543
No 262
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=57.35 E-value=47 Score=28.49 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=46.4
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc----h---HHH-----HHHHhhcCCCceEEEEcCC
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL----H---AKE-----IVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~----~---a~e-----l~~~~~~~~~d~IVvvGGD 176 (302)
.||++|++.|..-. .... ....+|+.+|+++++...+..+ . ... ...+...+++|.|++.||.
T Consensus 2 ~~~~~il~~~g~~~---~e~~--~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~ 76 (196)
T PRK11574 2 SASALVCLAPGSEE---TEAV--TTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGI 76 (196)
T ss_pred CceEEEEeCCCcch---hhHh--HHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCC
Confidence 46888998874422 2222 3456777788777664432110 0 000 1122222469999999996
Q ss_pred chHH------HHHHHHhcCccccccCCccEEEecCCC
Q 022147 177 GILV------EVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 177 GTl~------evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
+... ++++-|.+.. ....+++-|=.|+
T Consensus 77 ~~~~~~~~~~~l~~~L~~~~----~~g~~v~aic~G~ 109 (196)
T PRK11574 77 KGAECFRDSPLLVETVRQFH----RSGRIVAAICAAP 109 (196)
T ss_pred chhhhhhhCHHHHHHHHHHH----HCCCEEEEECHhH
Confidence 5322 1333222211 1256777666655
No 263
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=57.26 E-value=1.1e+02 Score=25.63 Aligned_cols=75 Identities=21% Similarity=0.185 Sum_probs=47.2
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
+..|+++.-=-..|...+. +.+...|+.+|+++. .+.....-.|+++.+..++.|.|+++|=||-=.+.+.++.
T Consensus 11 ~rprvlvak~GlDgHd~ga----kvia~~l~d~GfeVi--~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lv 84 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGA----KVIARALADAGFEVI--NLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLV 84 (143)
T ss_pred CCceEEEeccCccccccch----HHHHHHHHhCCceEE--ecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHH
Confidence 3344554433344544443 467899999998653 4433333456666666678999999999997665555554
Q ss_pred c
Q 022147 188 E 188 (302)
Q Consensus 188 ~ 188 (302)
+
T Consensus 85 e 85 (143)
T COG2185 85 E 85 (143)
T ss_pred H
Confidence 3
No 264
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=57.09 E-value=52 Score=27.53 Aligned_cols=94 Identities=20% Similarity=0.325 Sum_probs=56.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC---cEEEEEeCCcchHHHHHHHhhc-CCCceEEEEc----CCchH-
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI---QFTVQETTQQLHAKEIVKVLDL-SKYDGIVCVS----GDGIL- 179 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~---~~~v~~T~~~~~a~el~~~~~~-~~~d~IVvvG----GDGTl- 179 (302)
+.|+.|+.-.+... -..+.. +.....|...|+ +++++.....-+..-.++.+.. .+||+||+.| |+-.-
T Consensus 3 ~~ri~IV~s~~n~~-i~~~ll-~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~ 80 (144)
T PF00885_consen 3 GLRIAIVVSRFNEE-ITDRLL-EGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHF 80 (144)
T ss_dssp TEEEEEEEESTTHH-HHHHHH-HHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHH
T ss_pred CCEEEEEEEeccHH-HHHHHH-HHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHH
Confidence 35777777654332 223333 456677888888 7888887777777776766654 4699999999 44332
Q ss_pred ----HHHHHHHhcCccccccCCccEEEecC
Q 022147 180 ----VEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 180 ----~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
+++.++|++-.- +...++-+|+|-.
T Consensus 81 ~~v~~~v~~gl~~lsl-~~~~PV~~gvlt~ 109 (144)
T PF00885_consen 81 EYVANAVSRGLMDLSL-EYGIPVIFGVLTP 109 (144)
T ss_dssp HHHHHHHHHHHHHHHH-HHTSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhc-cCCccEEEEecCC
Confidence 345566654311 1112344555544
No 265
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=56.58 E-value=1e+02 Score=24.61 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhh---ccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe---CCcchHHHHHHHhhc
Q 022147 91 SKRLWCEKLRDFID---SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDL 164 (302)
Q Consensus 91 ~~~~w~~~l~~~l~---~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T---~~~~~a~el~~~~~~ 164 (302)
.++...+.+++.+. ..++..++.+|.- |...+...|.+.....++..|+.++.+.- ....+..+..+++..
T Consensus 8 va~~i~~~l~~~i~~l~~~~~~P~Laii~v---g~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 8 VAKEIKEELKEEIEKLKEKGITPKLAIILV---GDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHCT---EEEEEEE---S--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEec---CCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 44455555555443 2244445554432 33456667888889999999999887765 333444455555543
Q ss_pred -CCCceEEE
Q 022147 165 -SKYDGIVC 172 (302)
Q Consensus 165 -~~~d~IVv 172 (302)
...++|++
T Consensus 85 D~~V~GIlv 93 (117)
T PF00763_consen 85 DPSVHGILV 93 (117)
T ss_dssp -TT-SEEEE
T ss_pred CCCCCEEEE
Confidence 35677764
No 266
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=56.48 E-value=83 Score=30.51 Aligned_cols=88 Identities=14% Similarity=0.217 Sum_probs=53.3
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC------cchHHHHHHHhh---cCCCceEEEEcCCch
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLD---LSKYDGIVCVSGDGI 178 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~------~~~a~el~~~~~---~~~~d~IVvvGGDGT 178 (302)
..+|+.++.|+.=. . .|.+.+...|+.+++.+..+.-.. -++..++...+. ..+-+.||.+|| |+
T Consensus 32 ~~~k~~ivtd~~v~----~-~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGG-Gv 105 (360)
T COG0337 32 AGRKVAIVTDETVA----P-LYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGG-GV 105 (360)
T ss_pred cCCeEEEEECchhH----H-HHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECC-hH
Confidence 34589999997432 2 355788899999998874333322 222223333332 345678998888 77
Q ss_pred HHHHHHHHhcCccccccCCccEEEecC
Q 022147 179 LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 179 l~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
+-++.--....- .+.+++.-||.
T Consensus 106 igDlaGF~Aaty----~RGv~fiqiPT 128 (360)
T COG0337 106 IGDLAGFAAATY----MRGVRFIQIPT 128 (360)
T ss_pred HHHHHHHHHHHH----HcCCCeEeccc
Confidence 777655443321 12678888886
No 267
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=56.42 E-value=89 Score=29.51 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIV 171 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IV 171 (302)
.+++.......+.+....+++.||++..+|++.-. +. +.++.+++++|.++-++.....+-++ | ..+ +.|..|
T Consensus 195 ~~~~l~~R~~~I~ka~~A~~vGIlvgTl~~q~~~~-~~-~~l~~ll~~~gkk~y~i~~~~in~~k-L-~nf---~iD~fV 267 (308)
T TIGR03682 195 IDKFLRVRYARISKALDAKKFGILVSTKKGQRRPE-LA-EELKKLLEELGKEALLILLDNISPDQ-L-RNL---DFDAYV 267 (308)
T ss_pred HHHHHHHHHHHHHHHhhCCeEEEEEEccCcCCCHH-HH-HHHHHHHHHcCCeEEEEEeCCCCHHH-H-hcC---CcCEEE
Confidence 34443332233444456789999999999988865 45 68999999999998877777665432 1 122 478777
Q ss_pred EEc
Q 022147 172 CVS 174 (302)
Q Consensus 172 vvG 174 (302)
.+|
T Consensus 268 ~~a 270 (308)
T TIGR03682 268 NTA 270 (308)
T ss_pred Ecc
Confidence 554
No 268
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=56.38 E-value=1.6e+02 Score=27.28 Aligned_cols=88 Identities=11% Similarity=0.037 Sum_probs=55.7
Q ss_pred HHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc----chHHHHHHHhhcCCCceEEE
Q 022147 97 EKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----LHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 97 ~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~----~~a~el~~~~~~~~~d~IVv 172 (302)
..+-+.+.. ...+++.+|+.... -+.. .. +.++..+++.|+++.....-.. .+....++++...+.|.|++
T Consensus 124 ~a~~~~~~~-~~~~~v~ii~~~~~-~g~~--~~-~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~ 198 (350)
T cd06366 124 PAIAALLKK-FGWRRVATIYEDDD-YGSG--GL-PDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVV 198 (350)
T ss_pred HHHHHHHHH-CCCcEEEEEEEcCc-ccch--hH-HHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEE
Confidence 334344432 24578888875433 1222 22 4677888888987654433222 35556667776667899999
Q ss_pred EcCCchHHHHHHHHhcC
Q 022147 173 VSGDGILVEVVNGLLER 189 (302)
Q Consensus 173 vGGDGTl~evvngL~~~ 189 (302)
++.......++..+.+.
T Consensus 199 ~~~~~~~~~~~~~a~~~ 215 (350)
T cd06366 199 HFSPDLARRVFCEAYKL 215 (350)
T ss_pred ECChHHHHHHHHHHHHc
Confidence 88888888888887665
No 269
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=56.22 E-value=84 Score=28.84 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=21.9
Q ss_pred CCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 166 ~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
..|.+|+.|| +|+.|++- ..+|..++|.
T Consensus 241 ~aDl~Is~~G-~T~~E~~a-----------~g~P~i~i~~ 268 (279)
T TIGR03590 241 EADLAIGAAG-STSWERCC-----------LGLPSLAICL 268 (279)
T ss_pred HCCEEEECCc-hHHHHHHH-----------cCCCEEEEEe
Confidence 4688999999 99888764 2678878876
No 270
>PRK06490 glutamine amidotransferase; Provisional
Probab=56.01 E-value=15 Score=33.34 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=54.4
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHH------
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE------ 181 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e------ 181 (302)
..+|++||.|-.++.- ..+...|+..|.+++++.....+. +-.. ..+||++|+.||=+++++
T Consensus 6 ~~~~vlvi~h~~~~~~-------g~l~~~l~~~g~~~~v~~~~~~~~---~p~~--l~~~dgvii~Ggp~~~~d~~~wi~ 73 (239)
T PRK06490 6 DKRPVLIVLHQERSTP-------GRVGQLLQERGYPLDIRRPRLGDP---LPDT--LEDHAGAVIFGGPMSANDPDDFIR 73 (239)
T ss_pred CCceEEEEecCCCCCC-------hHHHHHHHHCCCceEEEeccCCCC---CCCc--ccccCEEEEECCCCCCCCCchHHH
Confidence 4679999998765432 245677888899888775432211 1112 346999999999887543
Q ss_pred ----HHHHHhcCccccccCCccEEEecCCChhhHHHhhhh
Q 022147 182 ----VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLD 217 (302)
Q Consensus 182 ----vvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~ 217 (302)
.+..++.. +.|+--|=.|. -.+|..+++
T Consensus 74 ~~~~~i~~~~~~-------~~PvLGIC~G~-Qlla~alGG 105 (239)
T PRK06490 74 REIDWISVPLKE-------NKPFLGICLGA-QMLARHLGA 105 (239)
T ss_pred HHHHHHHHHHHC-------CCCEEEECHhH-HHHHHHcCC
Confidence 12222222 46665565554 556666654
No 271
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=55.57 E-value=23 Score=36.16 Aligned_cols=131 Identities=13% Similarity=0.113 Sum_probs=70.7
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCch--hhhHHHHHHHHHHhcCCcEEEEEe-----CC
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQET-----TQ 151 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a--~~~~~~~v~~~L~~ag~~~~v~~T-----~~ 151 (302)
+--+.+.-.++.-...=...+-+.+....+..+++-|.|-..|=-+. ..+-.+.+..+...-|.. +.-| ..
T Consensus 69 rIgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~--~LGssR~k~~~ 146 (539)
T TIGR02477 69 KIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFD--IIGSGRTKIET 146 (539)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCch--hhcCCCCCCCC
Confidence 44555554444433222222323332223345788888766654222 222223455655555532 1111 12
Q ss_pred cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 152 QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 152 ~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.++-..+++.+...+.|.+|++|||||+..+. -|.+.- .+...++++.-||.==-||+..
T Consensus 147 ~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~-~Lae~~-~~~g~~i~VIGIPkTIDNDl~~ 206 (539)
T TIGR02477 147 EEQFAKALTTAKKLKLDGLVIIGGDDSNTNAA-LLAEYF-AKHGLKTQVIGVPKTIDGDLKN 206 (539)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHH-HHHHHH-HhcCCCceEEEEeeeecCCCCC
Confidence 33445566677777899999999999986653 222210 0012368899999877899874
No 272
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=55.55 E-value=30 Score=29.94 Aligned_cols=52 Identities=23% Similarity=0.283 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhh
Q 022147 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 155 a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
|.+.+.....+.+|.+|.++|||=+--+++.+... ....-+++.+. .++..|
T Consensus 99 a~D~~~l~~~~~~D~ivl~SgD~DF~p~v~~~~~~-------G~rv~v~~~~~--~~s~~L 150 (181)
T COG1432 99 AVDAMELADKKNVDTIVLFSGDGDFIPLVEAARDK-------GKRVEVAGIEP--MTSSDL 150 (181)
T ss_pred HHHHHHhhcccCCCEEEEEcCCccHHHHHHHHHHc-------CCEEEEEecCC--cCHHHH
Confidence 34445555556899999999999999999998776 34444555544 444444
No 273
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=55.37 E-value=61 Score=29.15 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=58.5
Q ss_pred CCCcEEEEEEcCCC------CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc---CCCce-EEEEcCC
Q 022147 107 GRPKRLYIFVNPFG------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDG-IVCVSGD 176 (302)
Q Consensus 107 ~r~~r~~vivNP~s------G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~---~~~d~-IVvvGGD 176 (302)
.+++++.+|+|-.. ....+..- .+.++.+|+..|+++.+..--...+..+..+++.. ..+|. +++.=|-
T Consensus 6 ~~~~g~aLII~n~~f~~~~~~r~g~~~D-~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sH 84 (243)
T cd00032 6 SKRRGLALIINNENFDKGLKDRDGTDVD-AENLTKLFESLGYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSH 84 (243)
T ss_pred CCCCCEEEEEechhcCCCCCCCCChHHH-HHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCC
Confidence 34667777775521 11122222 36889999999998877665555555665555542 34553 3444444
Q ss_pred ch-------------HHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 177 GI-------------LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 177 GT-------------l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
|. |.++++-+.......-..++-|-+|.+=-||.+...
T Consensus 85 G~~~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kPKl~~iqACRg~~~~~~ 135 (243)
T cd00032 85 GEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPKLFFIQACRGDELDLG 135 (243)
T ss_pred CCCCEEEEecCcEEEHHHHHHhhccCCCccccCCCcEEEEECCCCCcCCCc
Confidence 43 444444443211111112566888888777776543
No 274
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=55.07 E-value=19 Score=31.21 Aligned_cols=47 Identities=26% Similarity=0.413 Sum_probs=32.0
Q ss_pred chHHHHHHHhhcCCCceEEEEcC-CchHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 153 LHAKEIVKVLDLSKYDGIVCVSG-DGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 153 ~~a~el~~~~~~~~~d~IVvvGG-DGTl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
..|.++.+.+...++ .+|.-|| .|..-.+.++..+.. ...+|++|..
T Consensus 19 ~~A~~lG~~la~~g~-~lV~GGg~~GlM~a~a~ga~~~g------G~viGi~p~~ 66 (178)
T TIGR00730 19 ELAAELGAYLAGQGW-GLVYGGGRVGLMGAIADAAMENG------GTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHHCCC-EEEECCChHhHHHHHHHHHHhcC------CeEEEecchh
Confidence 456677777765443 3555556 688888888887653 5678999864
No 275
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=55.04 E-value=1.1e+02 Score=26.98 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCcEEEEEe---C--CcchHHHHHHHhhcCCCceEEEEcCCchH-HHHHHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDANIQFTVQET---T--QQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T---~--~~~~a~el~~~~~~~~~d~IVvvGGDGTl-~evvngL~~~~~~~~~~~~plgiI 203 (302)
+.+...+++.|...-+..+ . ....-.++.+.+.. +.|+|++.+.+.+. .+.++.+.+. .+|+..+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~vdgiii~~~~~~~~~~~i~~~~~~-------~ipvV~~ 89 (275)
T cd06307 19 AALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGA-RSDGVALVAPDHPQVRAAVARLAAA-------GVPVVTL 89 (275)
T ss_pred HHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHh-cCCEEEEeCCCcHHHHHHHHHHHHC-------CCcEEEE
Confidence 4566666666543322222 1 22223345555555 89999999988764 4677777664 5676655
No 276
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=54.81 E-value=65 Score=25.92 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=55.0
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchH--HHHH--HHhhcCCCceEEEEcCCchHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA--KEIV--KVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a--~el~--~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
..+++.+|. +..+.......+ +-++..++..|+++........... .... ..++...+|+|+| +.|.....++
T Consensus 8 G~r~i~~i~-~~~~~~~~~~r~-~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~-~~~~~a~~~~ 84 (160)
T PF13377_consen 8 GHRRIAFIG-GPPNSSVSRERL-EGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIIC-SNDRLALGVL 84 (160)
T ss_dssp T-SSEEEEE-SSTTSHHHHHHH-HHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEE-SSHHHHHHHH
T ss_pred CCCeEEEEe-cCCCChhHHHHH-HHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEE-cCHHHHHHHH
Confidence 356777777 334444444444 5677888999997654443332222 1111 1222225676554 9999999999
Q ss_pred HHHhcCccccccCCccEEEecCCChhhH
Q 022147 184 NGLLEREDWNDAIKVPLGVVPAGTGNGM 211 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP~GTgN~~ 211 (302)
+.|.+..- ..+--++++-.+....+
T Consensus 85 ~~l~~~g~---~vP~di~vv~~~~~~~~ 109 (160)
T PF13377_consen 85 RALRELGI---RVPQDISVVSFDDSPLL 109 (160)
T ss_dssp HHHHHTTS---CTTTTSEEEEESSSGHH
T ss_pred HHHHHcCC---cccccccEEEecCcHHH
Confidence 99987732 11223566666653333
No 277
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=54.78 E-value=86 Score=30.24 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=45.2
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-------cchHHHHHHHhhcCCCceEEEEcC----
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-------QLHAKEIVKVLDLSKYDGIVCVSG---- 175 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-------~~~a~el~~~~~~~~~d~IVvvGG---- 175 (302)
++.+|+++++---|= +...+| +++...|. |+++.-+---. -..+.+++++ ++.|.|+++||
T Consensus 27 ~~~~kVLi~YGGGSI--KrnGvy-dqV~~~Lk--g~~~~E~~GVEPNP~~~Tv~kaV~i~ke---e~idflLAVGGGSVi 98 (384)
T COG1979 27 PKDAKVLIVYGGGSI--KKNGVY-DQVVEALK--GIEVIEFGGVEPNPRLETLMKAVEICKE---ENIDFLLAVGGGSVI 98 (384)
T ss_pred cccCeEEEEecCccc--cccchH-HHHHHHhc--CceEEEecCCCCCchHHHHHHHHHHHHH---cCceEEEEecCcchh
Confidence 445899999975333 334467 68888888 55432111111 1234455554 68999999999
Q ss_pred CchHHHHHHHHhcCccc
Q 022147 176 DGILVEVVNGLLEREDW 192 (302)
Q Consensus 176 DGTl~evvngL~~~~~~ 192 (302)
|||=.=++-..+.-+.|
T Consensus 99 D~tK~IAa~a~y~GD~W 115 (384)
T COG1979 99 DGTKFIAAAAKYDGDPW 115 (384)
T ss_pred hhHHHHHhhcccCCChH
Confidence 66644444444444444
No 278
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=54.49 E-value=24 Score=36.59 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=58.6
Q ss_pred CcEEEEEEcCCCCCCch--hhhHHHHHHHHHHhcCCcE-E--EEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQF-T--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a--~~~~~~~v~~~L~~ag~~~-~--v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
..+++-+.|-..|=-+. ..+-.+.+..+....|..+ - -......++-.++.+.+...+.|.+|++|||||...+.
T Consensus 111 ~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~ 190 (610)
T PLN03028 111 NSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAA 190 (610)
T ss_pred CcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 45777777755553221 2222245666666655422 1 01112233445566666667899999999999986652
Q ss_pred HHHhcCccccccCCccEEEecCCChhhHH
Q 022147 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP~GTgN~~A 212 (302)
. |.+.-. +...++++.-||.==-||+.
T Consensus 191 ~-Lae~~~-~~~~~i~VIGIPKTIDNDL~ 217 (610)
T PLN03028 191 Q-LAETFA-EAKCKTKVVGVPVTLNGDLK 217 (610)
T ss_pred H-HHHHHH-HcCCCceEEEeceeeeCCCC
Confidence 2 222100 01136888999988789987
No 279
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=54.43 E-value=50 Score=24.40 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCC
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGD 176 (302)
...+...|+.+|+.+++.... .......+.+...++..++++|.+
T Consensus 20 a~~la~~Lr~~g~~v~~d~~~--~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 20 AEKLYAELQAAGVDVLLDDRN--ERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHHCCCEEEEECCC--CCcccchhHHHhcCCCEEEEECCc
Confidence 356777888889888764432 222233444555689999999954
No 280
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=54.36 E-value=33 Score=23.41 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHH------HHHHhcCccccccCCccEEEecC
Q 022147 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV------VNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev------vngL~~~~~~~~~~~~plgiIP~ 205 (302)
.....++..++.+++.......... .....++|.+|+.||..+.... ++-+.+.-. ...|++-+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~ 87 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVES----DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAA----AGKPVLGICL 87 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccc----cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHH----cCCEEEEEec
Confidence 4456677777777766555443222 2234579999999999998554 333333211 1467777776
Q ss_pred CC
Q 022147 206 GT 207 (302)
Q Consensus 206 GT 207 (302)
|+
T Consensus 88 g~ 89 (92)
T cd03128 88 GA 89 (92)
T ss_pred cc
Confidence 65
No 281
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=54.12 E-value=1.2e+02 Score=26.47 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGD 176 (302)
+.+...++..|.++.+..+....+ ..++.+.+...++|+|++.+.|
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 19 KRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 345555555565555544432111 1233344444556666666654
No 282
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=53.55 E-value=44 Score=31.44 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=38.1
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC------cchHH----HHHHHhhcCC-CceEEE-EcCCchHH
Q 022147 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------QLHAK----EIVKVLDLSK-YDGIVC-VSGDGILV 180 (302)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~------~~~a~----el~~~~~~~~-~d~IVv-vGGDGTl~ 180 (302)
.-||.|.++... ...+ +.....|++.|+++.+-..-. .+..+ ++.+.+...+ .++|+| -||+|+.
T Consensus 4 I~viAPSs~~~~-~~~~-~~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dpi~aI~~~rGGyg~~- 80 (305)
T PRK11253 4 FHLIAPSGYPID-QAAA-LRGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTPNTIVLAVRGGYGAS- 80 (305)
T ss_pred EEEEeCCCCCCC-HHHH-HHHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCCccEEEEecccCCHh-
Confidence 457899887532 2334 466677888888765433311 22233 3433331122 676665 4888874
Q ss_pred HHHHH
Q 022147 181 EVVNG 185 (302)
Q Consensus 181 evvng 185 (302)
+++..
T Consensus 81 rlLp~ 85 (305)
T PRK11253 81 RLLAG 85 (305)
T ss_pred Hhhhh
Confidence 33433
No 283
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=53.39 E-value=90 Score=31.62 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=47.4
Q ss_pred hhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc
Q 022147 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG 174 (302)
+.+....+.+.||+|..++++.-. +. +.++.+++++|.++-++.....+-++- +.....|+.|.+|
T Consensus 275 I~kA~~A~~~GIlVgTL~~q~~~~-ii-~~l~~li~~~GkK~yl~~vgkinpaKL----aNF~eID~fV~va 340 (496)
T TIGR00272 275 VHVARDAGCIGIVVGTLGVRNTRE-TI-NELRKMIKTAGKKHYLFVVGKPNPAKL----ANFEDIDIFVLLG 340 (496)
T ss_pred HHHHhcCCEEEEEEecCccCCCHH-HH-HHHHHHHHHcCCcEEEEEeCCCCHHHH----hCCCCCCEEEEcc
Confidence 444455688999999999987754 55 689999999999988888877765422 1122466655554
No 284
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=53.23 E-value=16 Score=27.75 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.2
Q ss_pred eeEEecCCChHHHHHHHHHHHhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDF 102 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~ 102 (302)
+.+.|..+++++++.|+++|++.
T Consensus 78 r~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 78 RTYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred ceEEEECCCHHHHHHHHHHHHhh
Confidence 57888899999999999999875
No 285
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=53.14 E-value=1.9e+02 Score=26.72 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=49.3
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
...+++.+|+.... -+.. +.+.++..++..|+++.-.. .....+...++.++...++|.|++.+-.+-...++.
T Consensus 142 ~~~~~va~l~~~~~-~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~ 217 (344)
T cd06345 142 HGFKTAAIVAEDAA-WGKG---IDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGFSGNVGVLFTQ 217 (344)
T ss_pred CCCceEEEEecCch-hhhH---HHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEeecCchHHHHHH
Confidence 35678888775432 2322 23577888888887753322 222345566677777778998887766655666777
Q ss_pred HHhcC
Q 022147 185 GLLER 189 (302)
Q Consensus 185 gL~~~ 189 (302)
.+.+.
T Consensus 218 ~~~~~ 222 (344)
T cd06345 218 QWAEQ 222 (344)
T ss_pred HHHHc
Confidence 77655
No 286
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=52.93 E-value=1.5e+02 Score=25.65 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCc
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDG 177 (302)
...++..+++.|+++.+..+.+... ..++.+.+...++|+|++.+.+-
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 66 (267)
T cd06284 18 LKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSL 66 (267)
T ss_pred HHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 3566666777776665554432211 22344444445677777766553
No 287
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=52.81 E-value=29 Score=35.65 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=61.4
Q ss_pred CCCcEEEEEEcCCCCCCch--hhhHHHHHHHHHHhcCCc-EEEEEe--CCcchHHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQ-FTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a--~~~~~~~v~~~L~~ag~~-~~v~~T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
....+++-|.|-..|=-+. ..+-...+..+...-|.+ .---.+ ...++-..+++.+...+.|.+|++|||||+..
T Consensus 100 ~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~~~l~~~~Id~LviIGGd~S~~~ 179 (555)
T PRK07085 100 NPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSNTN 179 (555)
T ss_pred cCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHH
Confidence 3456788888866654322 122223455555555531 110001 12334556667777778999999999999876
Q ss_pred HHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 182 VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+. -|.+.-. +...++++.-||.==-||+..
T Consensus 180 A~-~Lae~~~-~~~~~i~VIGIPkTIDNDl~~ 209 (555)
T PRK07085 180 AA-ILAEYFA-KHGCKTQVIGVPKTIDGDLKN 209 (555)
T ss_pred HH-HHHHHHH-HhCCCccEEEEeeeecCCCCC
Confidence 53 3332100 012378999999888888873
No 288
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=52.71 E-value=2.5e+02 Score=28.03 Aligned_cols=153 Identities=24% Similarity=0.337 Sum_probs=81.1
Q ss_pred eeEEEeceeEEEEEccCCe--EEEecCC--cccccce--eeEEEEE-EcCceEEEEEeecCCCcccccCCCCceeEeeEE
Q 022147 11 DRVRVSGRITAMTLTGDGR--LRWTDGH--QRSLTLE--KQVLGFV-VEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFV 83 (302)
Q Consensus 11 ~~~~~~~~~~~~~l~~~~~--l~w~~~~--~~~~~~~--~~vl~~~-~~~~~~~i~~~~~~~~~~~c~~~~~~~~~~~~~ 83 (302)
..|+|.|.-+-+|.-..|| |..+++. -+|.... ..-|.+. .+|.++.+.--..-+. .+-+|.
T Consensus 24 ~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~~l~f~p~eG~~V~v~G~is~Y~-----------~rG~YQ 92 (440)
T COG1570 24 GQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNRRLKFRPEEGMQVLVRGKISLYE-----------PRGDYQ 92 (440)
T ss_pred CeEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCcccccCCCccCCCEEEEEEEEEEEc-----------CCCceE
Confidence 5689999999988767765 5555522 1332221 2222232 2444444421111010 123333
Q ss_pred ecCCC-----hHHHHHHHHHHHhhhhc------------cCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhc--CCcE
Q 022147 84 FEPLS-----EDSKRLWCEKLRDFIDS------------FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQF 144 (302)
Q Consensus 84 ~~~~~-----~~~~~~w~~~l~~~l~~------------~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~a--g~~~ 144 (302)
+...+ .-....=.+.++..|.. +.-|+++.||-.|.+ .+ + ..+...++.. .+++
T Consensus 93 i~~~~~~p~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tg---Aa---i-rDIl~~~~rR~P~~~v 165 (440)
T COG1570 93 IVAESMEPAGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTG---AA---L-RDILHTLSRRFPSVEV 165 (440)
T ss_pred EEEecCCcCChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCch---HH---H-HHHHHHHHhhCCCCeE
Confidence 33322 22333334566665531 134789999988743 33 2 2444444443 2566
Q ss_pred EEEEeCCcch--HHHHHHHhh----cCCCceEEEEcCCchHHH
Q 022147 145 TVQETTQQLH--AKEIVKVLD----LSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 145 ~v~~T~~~~~--a~el~~~~~----~~~~d~IVvvGGDGTl~e 181 (302)
.++.|.-.|+ +.++++.+. ...+|+||++=|=|.+-+
T Consensus 166 iv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiED 208 (440)
T COG1570 166 IVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIED 208 (440)
T ss_pred EEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHH
Confidence 6666654443 456666553 245999999999999865
No 289
>PRK10116 universal stress protein UspC; Provisional
Probab=52.65 E-value=97 Score=24.54 Aligned_cols=65 Identities=15% Similarity=0.288 Sum_probs=34.3
Q ss_pred HHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCC--chHHHHH---HHHhcCccccccCCccEEEecC
Q 022147 134 KPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD--GILVEVV---NGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 134 ~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGD--GTl~evv---ngL~~~~~~~~~~~~plgiIP~ 205 (302)
+.+....++..+........-+..+.+.+...++|.||+ |-- +.+..+. +.++.+ .++|+-++|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~-g~~~~~~~~~~~s~a~~v~~~------~~~pVLvv~~ 139 (142)
T PRK10116 70 DKLIQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVIC-GNHNHSFFSRASCSAKRVIAS------SEVDVLLVPL 139 (142)
T ss_pred HHHHHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEE-cCCcchHHHHHHHHHHHHHhc------CCCCEEEEeC
Confidence 333444565443222222223345666666668887665 433 3455543 344444 3789988884
No 290
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=52.64 E-value=1.1e+02 Score=27.80 Aligned_cols=72 Identities=25% Similarity=0.362 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHH---HHhhcCCCc-eEEEEcCCchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIV---KVLDLSKYD-GIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~---~~~~~~~~d-~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
.++..-.++..|+++.-..--.-.-..++. +....++.+ .||++|=||++-.|+.+|. ++|+.-+|.
T Consensus 133 AeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~~~~~~lIVvAGMEGaLPsvvagLv---------D~PVIavPT 203 (254)
T COG1691 133 AEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKIEDADVLIVVAGMEGALPSVVAGLV---------DVPVIAVPT 203 (254)
T ss_pred HHHHHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHhhCCCeEEEEcccccchHHHHHhcc---------CCCeEeccc
Confidence 356677788888876544433333333333 333345566 4777788999999999997 457778887
Q ss_pred CChhh
Q 022147 206 GTGNG 210 (302)
Q Consensus 206 GTgN~ 210 (302)
-+|=+
T Consensus 204 sVGYG 208 (254)
T COG1691 204 SVGYG 208 (254)
T ss_pred ccccC
Confidence 66533
No 291
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=52.59 E-value=88 Score=25.48 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=48.8
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
-+.+-++-||.++..+++.+ .+..+|...|+++-+ +...+ .|....++ .+.+.+...| +|+-|+++.+.
T Consensus 36 i~~vev~~np~~~~~~g~G~---~~a~~l~~~gvdvvi--~~~iG~~a~~~l~~---~GIkv~~~~~--~~V~e~i~~~~ 105 (121)
T COG1433 36 IKNVEVIENPAASAEKGAGI---RIAELLVDEGVDVVI--ASNIGPNAYNALKA---AGIKVYVAPG--GTVEEAIKAFL 105 (121)
T ss_pred EEEEEEeecccccccCcchH---HHHHHHHHcCCCEEE--ECccCHHHHHHHHH---cCcEEEecCC--CCHHHHHHHHh
Confidence 35678899997776665542 567888888887643 33333 34443333 3567777766 99999999998
Q ss_pred cCc
Q 022147 188 ERE 190 (302)
Q Consensus 188 ~~~ 190 (302)
.-.
T Consensus 106 ~g~ 108 (121)
T COG1433 106 EGE 108 (121)
T ss_pred cCC
Confidence 763
No 292
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=52.58 E-value=44 Score=32.39 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=46.4
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-------hHHHHHHHhhcCCCceEEEEcCCchHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-------HAKEIVKVLDLSKYDGIVCVSGDGILV 180 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-------~a~el~~~~~~~~~d~IVvvGGDGTl~ 180 (302)
..|+.+++-.|.=-+-- .+ +.++..|++.++.|+++.-..++ ++.+++++ .++|.+|.+|| |..+
T Consensus 69 gaKk~llvTDkni~~~~---~~-~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~---~~fDs~vaiGG-GSa~ 140 (465)
T KOG3857|consen 69 GAKKTLLVTDKNIAKLG---LV-KVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKK---KNFDSFVAIGG-GSAH 140 (465)
T ss_pred CccceEEeeCCChhhcc---cH-HHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHh---cccceEEEEcC-cchh
Confidence 45778888876433222 23 57788999999999987654333 44555554 57999999998 5555
Q ss_pred HHHHH
Q 022147 181 EVVNG 185 (302)
Q Consensus 181 evvng 185 (302)
+...+
T Consensus 141 DtaKa 145 (465)
T KOG3857|consen 141 DTAKA 145 (465)
T ss_pred hhHHH
Confidence 54433
No 293
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=52.50 E-value=92 Score=23.87 Aligned_cols=73 Identities=10% Similarity=0.250 Sum_probs=42.5
Q ss_pred CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccE
Q 022147 121 GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPL 200 (302)
Q Consensus 121 G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~pl 200 (302)
|.|-+.+.+.+.++..+++.|+++++..+... ++. .. ..++|.|++.- + +..-.+.+.+.- ....+|+
T Consensus 7 g~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~-~~~---~~--~~~~Diil~~P-q--v~~~~~~i~~~~---~~~~~pv 74 (96)
T cd05564 7 SAGMSTSILVKKMKKAAEKRGIDAEIEAVPES-ELE---EY--IDDADVVLLGP-Q--VRYMLDEVKKKA---AEYGIPV 74 (96)
T ss_pred CCCchHHHHHHHHHHHHHHCCCceEEEEecHH-HHH---Hh--cCCCCEEEECh-h--HHHHHHHHHHHh---ccCCCcE
Confidence 34455556678999999999999887766532 221 22 24688665432 2 222223332210 1137899
Q ss_pred EEecC
Q 022147 201 GVVPA 205 (302)
Q Consensus 201 giIP~ 205 (302)
..||.
T Consensus 75 ~~I~~ 79 (96)
T cd05564 75 AVIDM 79 (96)
T ss_pred EEcCh
Confidence 99996
No 294
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=51.99 E-value=1.3e+02 Score=31.97 Aligned_cols=57 Identities=11% Similarity=-0.017 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
+-+..+|+..|+++. .........++++.+..++.|.|++++=|+|-.+.+..+.+.
T Consensus 600 ~fv~~~l~~~GfeV~--~~~~~~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~ 656 (714)
T PRK09426 600 KVIATAFADLGFDVD--IGPLFQTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEA 656 (714)
T ss_pred HHHHHHHHhCCeeEe--cCCCCCCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHH
Confidence 567899999998773 332223445677777678899999999999987777666543
No 295
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=51.96 E-value=1.3e+02 Score=27.87 Aligned_cols=79 Identities=19% Similarity=0.089 Sum_probs=50.8
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+++.+|+.....-++. . .+.++..+++.|+++..... ....+...++.++...+.|.|++.+.-+-...+++.
T Consensus 135 ~~~~v~~l~~~~~~~g~~--~-~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~~~~~~~~~~~~ 211 (344)
T cd06348 135 GIKRVAVFYAQDDAFSVS--E-TEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISALAADGGNLVRQ 211 (344)
T ss_pred CCeEEEEEEeCCchHHHH--H-HHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECCcchhHHHHHHH
Confidence 457888887432222222 2 35778889988987643221 223455667777777789988877766666778887
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 212 ~~~~ 215 (344)
T cd06348 212 LREL 215 (344)
T ss_pred HHHc
Confidence 7665
No 296
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=51.84 E-value=75 Score=25.40 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHH----HHHHHHhcCccccccCCccEEEecC
Q 022147 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV----EVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~----evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
.++.+++..++...........-+.++.+.+...+.|.||+. =-|++. .+.+.++++ .++|+-++|.
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~G-s~~~~~~~lgSva~~v~~~------a~~pVLvv~~ 139 (144)
T PRK15118 69 ALTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCG-HHQDFWSKLMSSARQLINT------VHVDMLIVPL 139 (144)
T ss_pred HHHHHHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEe-CcccHHHHHHHHHHHHHhh------CCCCEEEecC
Confidence 345555666766432222122223456666666788877663 334432 244444444 3789999985
No 297
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=51.63 E-value=42 Score=27.15 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCc-----hHHHHHHHHhc
Q 022147 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDG-----ILVEVVNGLLE 188 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDG-----Tl~evvngL~~ 188 (302)
..+...|+..|+++.... .+..++..+..+++. ..+|.||+.||=| ...+++..+..
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~-~~~dliittGG~g~g~~D~t~~~l~~~~~ 84 (135)
T smart00852 21 PALAELLTELGIEVTRYVIVPDDKEAIKEALREAL-ERADLVITTGGTGPGPDDVTPEAVAEALG 84 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHH-hCCCEEEEcCCCCCCCCcCcHHHHHHHhC
Confidence 467888999998654332 233333344444433 4699999999865 35556655543
No 298
>PRK13566 anthranilate synthase; Provisional
Probab=51.59 E-value=3.3e+02 Score=29.02 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=54.0
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHH-----HH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV-----EV 182 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~-----ev 182 (302)
++++++||=|-.+ +...+...|+..|.++.++...... ++ ++..++|.||+.||-|+.. +.
T Consensus 525 ~g~~IlvID~~ds--------f~~~l~~~Lr~~G~~v~vv~~~~~~---~~---~~~~~~DgVVLsgGpgsp~d~~~~~l 590 (720)
T PRK13566 525 EGKRVLLVDHEDS--------FVHTLANYFRQTGAEVTTVRYGFAE---EM---LDRVNPDLVVLSPGPGRPSDFDCKAT 590 (720)
T ss_pred CCCEEEEEECCCc--------hHHHHHHHHHHCCCEEEEEECCCCh---hH---hhhcCCCEEEECCCCCChhhCCcHHH
Confidence 4567777776311 2246778899999988877665432 22 2234799999999998754 44
Q ss_pred HHHHhcCccccccCCccEEEecCCChhhHHHhhh
Q 022147 183 VNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~ 216 (302)
+..++++ ++||--|=.|- =.++..++
T Consensus 591 I~~a~~~-------~iPILGIClG~-QlLa~alG 616 (720)
T PRK13566 591 IDAALAR-------NLPIFGVCLGL-QAIVEAFG 616 (720)
T ss_pred HHHHHHC-------CCcEEEEehhH-HHHHHHcC
Confidence 5544443 56665555553 44555554
No 299
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.15 E-value=1.7e+02 Score=27.48 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhhhccC-CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhc-
Q 022147 90 DSKRLWCEKLRDFIDSFG-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDL- 164 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~~-r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~- 164 (302)
+.+++..+.+++.+.... +|+=..|++ |...+...|.+......++.|++++++.-. ..++..+..+++..
T Consensus 10 ~vA~~i~~~l~~~v~~l~~~P~Laii~v----g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 10 PAAEAVYAELRARLAKLPFVPHLRVVRL----GEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456667777777665544 443333444 445566678788888999999998776542 23344455555543
Q ss_pred CCCceEEEE---cCCchHHHHHHHHhcCccccccCCcc--------EEEecCCChhhHHHhhh
Q 022147 165 SKYDGIVCV---SGDGILVEVVNGLLEREDWNDAIKVP--------LGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 165 ~~~d~IVvv---GGDGTl~evvngL~~~~~~~~~~~~p--------lgiIP~GTgN~~A~sL~ 216 (302)
...|+|++- -..-.-+++++.+.-..|-+-....- -+++|| |..+.-.-|.
T Consensus 86 ~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~Pc-Tp~avi~lL~ 147 (287)
T PRK14173 86 PEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMGGEALEPC-TPAGVVRLLK 147 (287)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcCCCCCCCC-CHHHHHHHHH
Confidence 346777664 23444556666665444322111111 135677 7676666553
No 300
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=51.14 E-value=1e+02 Score=27.53 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=32.2
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCC
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGD 176 (302)
+|++|+..| |...- ..+...|+.+|+.+.++..... ..+++|+||+.||-
T Consensus 1 ~~v~Vl~~~--G~n~~-----~~~~~al~~~G~~~~~i~~~~~----------~l~~~d~lilpGG~ 50 (227)
T TIGR01737 1 MKVAVIRFP--GTNCD-----RDTVYALRLLGVDAEIVWYEDG----------SLPDYDGVVLPGGF 50 (227)
T ss_pred CeEEEEeCC--CcCcH-----HHHHHHHHHCCCeEEEEecCCC----------CCCCCCEEEECCCC
Confidence 478999998 32221 1334667778988776643321 13579999999984
No 301
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=50.86 E-value=83 Score=26.64 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHh-hcCCCceEEEEcCCch-----HHHHHHHHhcC
Q 022147 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVL-DLSKYDGIVCVSGDGI-----LVEVVNGLLER 189 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~-~~~~~d~IVvvGGDGT-----l~evvngL~~~ 189 (302)
..+..+|++.|+++.... .+..+...+..+++ +..++|.||+.||=|. ..+++..+.++
T Consensus 25 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l~~~ 91 (163)
T TIGR02667 25 QYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPLFDK 91 (163)
T ss_pred HHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHHHCC
Confidence 467888999998765433 33333334444443 2357999999999653 45566666544
No 302
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=50.45 E-value=1.6e+02 Score=27.68 Aligned_cols=90 Identities=9% Similarity=0.035 Sum_probs=53.5
Q ss_pred HHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--CC--cchHHHHHHHhhcCCCceE
Q 022147 95 WCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQ--QLHAKEIVKVLDLSKYDGI 170 (302)
Q Consensus 95 w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~~--~~~a~el~~~~~~~~~d~I 170 (302)
....+-+++... ..+++.++.+...+-+.. .. +.+...++..|+++..... .. ..+...+.+++...+ |.|
T Consensus 124 ~~~a~~~~l~~~-~~~~v~ii~~~~~~~g~~--~~-~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-~vi 198 (389)
T cd06352 124 LGEAVLALLRWF-NWHVAVVVYSDDSENCFF--TL-EALEAALREFNLTVSHVVFMEDNSGAEDLLEILQDIKRRS-RII 198 (389)
T ss_pred HHHHHHHHHHHc-CceEEEEEEecCCccHHH--HH-HHHHHHHHhcCCeEEEEEEecCCccchhHHHHHHHhhhcc-eEE
Confidence 334444444332 256777777765522222 22 4677778888887643322 21 244455566665555 888
Q ss_pred EEEcCCchHHHHHHHHhcC
Q 022147 171 VCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 171 VvvGGDGTl~evvngL~~~ 189 (302)
|+++.......++..+...
T Consensus 199 i~~~~~~~~~~~l~q~~~~ 217 (389)
T cd06352 199 IMCGSSEDVRELLLAAHDL 217 (389)
T ss_pred EEECCHHHHHHHHHHHHHc
Confidence 8888877788888877665
No 303
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=50.23 E-value=1.7e+02 Score=25.46 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=7.4
Q ss_pred HhhcCCCceEEEEcCC
Q 022147 161 VLDLSKYDGIVCVSGD 176 (302)
Q Consensus 161 ~~~~~~~d~IVvvGGD 176 (302)
.+...+.|+||+.+.|
T Consensus 50 ~l~~~~vdgiii~~~~ 65 (269)
T cd06275 50 MLAQKRVDGLLVMCSE 65 (269)
T ss_pred HHHHcCCCEEEEecCC
Confidence 3333445555555544
No 304
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=50.00 E-value=84 Score=30.82 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE
Q 022147 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE 148 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~ 148 (302)
..+.|.+.|.+.++... .+++-|++.+..|.+ . ..+.++|+..|+++...-
T Consensus 150 ~~~~Y~~~l~~~~~~~~-~~~lkVvvD~~nG~~--~----~~~~~ll~~lg~~v~~in 200 (434)
T cd05802 150 ARGRYIEFLKSTFPKDL-LSGLKIVLDCANGAA--Y----KVAPEVFRELGAEVIVIN 200 (434)
T ss_pred hHHHHHHHHHHhcCccc-cCCCEEEEECCCchH--H----HHHHHHHHHcCCeEEEec
Confidence 34568888877765321 357899999966644 2 235577787788775443
No 305
>PRK09273 hypothetical protein; Provisional
Probab=49.96 E-value=47 Score=29.75 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=22.8
Q ss_pred EEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE
Q 022147 115 FVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE 148 (302)
Q Consensus 115 ivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~ 148 (302)
++|..|...+-.-++ +.++..|+..|+++.-+-
T Consensus 5 li~e~sqa~kn~~i~-~~L~~~L~~~G~eV~D~G 37 (211)
T PRK09273 5 LINENSQAAKNAIIY-EALKKVADPKGHEVFNYG 37 (211)
T ss_pred eecccchhhhhHHHH-HHHHHHHHHCCCEEEEeC
Confidence 566666654444455 699999999998765443
No 306
>PRK09065 glutamine amidotransferase; Provisional
Probab=49.35 E-value=61 Score=29.17 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHH
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ 180 (302)
|.+.+...|...+++++++.....++. -+..+||+||+.||=.+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~~~~dgvvi~Gg~~~~~ 68 (237)
T PRK09065 23 FPHWIRVALGLAEQPVVVVRVFAGEPL------PAPDDFAGVIITGSWAMVT 68 (237)
T ss_pred HHHHHHHHhccCCceEEEEeccCCCCC------CChhhcCEEEEeCCCcccC
Confidence 556677788888888877665543221 1234689999999987744
No 307
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=49.11 E-value=2e+02 Score=27.47 Aligned_cols=79 Identities=9% Similarity=0.185 Sum_probs=49.1
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC--cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~--~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+++.+|+....-....... .+.+...++..|+.+....... ..+..++.+++.... +.||+++..-.+..++..
T Consensus 136 ~W~~vaiiy~~~~~~~~~~~~-~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ll~~ 213 (387)
T cd06386 136 HWRSALLVYEDDKQERNCYFT-LEGVHHVFQEEGYHMSIYPFDETKDLDLDEIIRAIQASE-RVVIMCAGADTIRSIMLA 213 (387)
T ss_pred CCeEEEEEEEcCCCCccceeh-HHHHHHHHHhcCceEEEEecCCCCcccHHHHHHHHHhcC-cEEEEecCHHHHHHHHHH
Confidence 457888887432211111111 2567788888898877655432 235677777776655 888888777666666666
Q ss_pred Hhc
Q 022147 186 LLE 188 (302)
Q Consensus 186 L~~ 188 (302)
..+
T Consensus 214 A~~ 216 (387)
T cd06386 214 AHR 216 (387)
T ss_pred HHH
Confidence 544
No 308
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=49.10 E-value=1.9e+02 Score=25.47 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=47.5
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+..+++.++..+... .+.... +.++..+++.|+++........++..+.++++. ..+|+ |++.+|.+...++..+
T Consensus 129 ~g~~~i~~l~~~~~~--~~~~r~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~da-i~~~~d~~a~~~~~~~ 203 (281)
T cd06325 129 PDAKTVGVLYNPSEA--NSVVQV-KELKKAAAKLGIEVVEATVSSSNDVQQAAQSLA-GKVDA-IYVPTDNTVASAMEAV 203 (281)
T ss_pred CCCcEEEEEeCCCCc--cHHHHH-HHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhc-ccCCE-EEEcCchhHHhHHHHH
Confidence 456788888766542 222223 567778888887654322233344455555554 24565 5567898888888888
Q ss_pred hcC
Q 022147 187 LER 189 (302)
Q Consensus 187 ~~~ 189 (302)
.+.
T Consensus 204 ~~~ 206 (281)
T cd06325 204 VKV 206 (281)
T ss_pred HHH
Confidence 665
No 309
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=49.02 E-value=2.8e+02 Score=27.45 Aligned_cols=158 Identities=20% Similarity=0.306 Sum_probs=78.5
Q ss_pred eeEEEeceeEEEEEccCCe--EEEecCC--cccccceeeE--EEEE-EcCceEEEEEeecCCCcccccCCCCceeEeeEE
Q 022147 11 DRVRVSGRITAMTLTGDGR--LRWTDGH--QRSLTLEKQV--LGFV-VEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFV 83 (302)
Q Consensus 11 ~~~~~~~~~~~~~l~~~~~--l~w~~~~--~~~~~~~~~v--l~~~-~~~~~~~i~~~~~~~~~~~c~~~~~~~~~~~~~ 83 (302)
..++|.|....++..+.|| |+.+++. -+|....+.. +.+. .+|.++.+.--+.-+.+ .+.-...-..
T Consensus 18 ~~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~~~l~f~~~~G~~V~v~g~v~~y~~------~G~~ql~v~~ 91 (432)
T TIGR00237 18 LQVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNNNRLKFRPQNGQQVLVRGGISVYEP------RGDYQIICFE 91 (432)
T ss_pred CcEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChhhCCCCCCCCCCEEEEEEEEEEECC------CCcEEEEEEE
Confidence 4789999999998866786 6666622 2333221111 1111 24455444222211110 1112122222
Q ss_pred ecCCChHHHHHHHHHHHhhhh-----------cc-CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcC--CcEEEEEe
Q 022147 84 FEPLSEDSKRLWCEKLRDFID-----------SF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDAN--IQFTVQET 149 (302)
Q Consensus 84 ~~~~~~~~~~~w~~~l~~~l~-----------~~-~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag--~~~~v~~T 149 (302)
++....-+...=.+.+++.|. +. .-|+++.||-.|. +.|. ..+...++... +++.++.+
T Consensus 92 i~~~G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~---~aa~----~D~~~~~~~r~p~~~~~~~~~ 164 (432)
T TIGR00237 92 MQPAGEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQT---GAAL----ADILHILKRRDPSLKVVIYPT 164 (432)
T ss_pred eccCChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCc---cHHH----HHHHHHHHhhCCCceEEEecc
Confidence 222221122222233444432 12 2478999998773 3332 24445555443 45666666
Q ss_pred CCcch--HHHHHHHhh----cCCCceEEEEcCCchHHH
Q 022147 150 TQQLH--AKEIVKVLD----LSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 150 ~~~~~--a~el~~~~~----~~~~d~IVvvGGDGTl~e 181 (302)
.-.|+ +.++++.+. ...+|+||++=|=|.+-+
T Consensus 165 ~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eD 202 (432)
T TIGR00237 165 LVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLED 202 (432)
T ss_pred cccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHH
Confidence 44443 345665543 234899999999999875
No 310
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.01 E-value=2e+02 Score=26.82 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhhhcc----CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe---CCcchHHHHHHHh
Q 022147 90 DSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVL 162 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~----~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T---~~~~~a~el~~~~ 162 (302)
+.++++.+.+++.+... ++..++.+|.= |...+...|.+.-...+++.|+++++..- ..+++..++.+++
T Consensus 10 ~~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~v---g~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~L 86 (283)
T PRK14192 10 ALAKQIEEELSVRVEALKAKTGRTPILATILV---GDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEEL 86 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeEEEEEe---CCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555666666654432 23334444432 34455566777777888889998776654 1233444555555
Q ss_pred hc
Q 022147 163 DL 164 (302)
Q Consensus 163 ~~ 164 (302)
..
T Consensus 87 n~ 88 (283)
T PRK14192 87 NA 88 (283)
T ss_pred hC
Confidence 43
No 311
>PRK09492 treR trehalose repressor; Provisional
Probab=48.83 E-value=95 Score=28.18 Aligned_cols=99 Identities=10% Similarity=0.069 Sum_probs=55.8
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC-CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~-~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
..+++.+|-.+.+....+.... +-.+..++++|+++.....+ ..+.+.+.++++...++|+|+ +..|-.-..+++.|
T Consensus 174 G~~~I~~i~~~~~~~~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~D~~A~g~~~al 251 (315)
T PRK09492 174 GHRHISYLGVDHSDVTTGKRRH-QAYLAFCKQHKLTPVAALGGLSMQSGYELVAKVLTPETTALV-CATDTLALGASKYL 251 (315)
T ss_pred CCCeEEEEcCCcccchhHHHHH-HHHHHHHHHcCCCceeecCCCCchHHHHHHHHHhhcCCCEEE-EcCcHHHHHHHHHH
Confidence 3467877743322222222223 46677788888876543322 223455566665445677766 55598888899999
Q ss_pred hcCccccccCCccEEEecCCChhhHHHhh
Q 022147 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
.++.- -.+.++-.+.. .++..+
T Consensus 252 ~~~g~------~disvig~d~~-~~~~~~ 273 (315)
T PRK09492 252 QEQGR------DDIQVAGVGNT-PLLKFL 273 (315)
T ss_pred HHcCC------CceEEEeeCch-hHhhhc
Confidence 87642 14666655542 344433
No 312
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=48.77 E-value=1.9e+02 Score=25.58 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHhhhhccC-CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE-EEEeC----CcchHHHHHHH
Q 022147 88 SEDSKRLWCEKLRDFIDSFG-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT-VQETT----QQLHAKEIVKV 161 (302)
Q Consensus 88 ~~~~~~~w~~~l~~~l~~~~-r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~-v~~T~----~~~~a~el~~~ 161 (302)
+.+......+.|.+.+...+ .++++.+|..+..........+ +-++..|+..|+... +..+. +.+.+.+.+++
T Consensus 107 ~~~~g~~~~~~l~~~~~~~g~~~~~i~~i~~~~~~~~~~~~R~-~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (289)
T cd01540 107 ATKIGEQVGEAIADEMKKRGWDPKEVGALRITYDELDTAKPRT-DGALEALKAPGFPEANIFQAPQKTTDTEGAFDAAAS 185 (289)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCcchhhHH-HHHHHHHhcCCCCcceEecccccCcchhhHHHHHHH
Confidence 34444555555555543322 3467777754322222223333 466777777776532 22221 13445555555
Q ss_pred hhcC--CCce-EEEEcCCchHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 162 LDLS--KYDG-IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 162 ~~~~--~~d~-IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
+... .++. .|++.+|.+...+++.+.+..-. .-.+.++-.+
T Consensus 186 ~l~~~~~~~~~~i~~~~d~~a~g~~~al~~~g~~----~~di~vig~d 229 (289)
T cd01540 186 TLTKNPNVKNWIIYGLNDETVLGAVRATEQSGIA----AADVIGVGIN 229 (289)
T ss_pred HHHhCCCcCeeEEEeCCcHHHHHHHHHHHHcCCC----CcceEEEecC
Confidence 5332 3443 68889999999999999776421 1135666444
No 313
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.46 E-value=1.7e+02 Score=27.61 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhhhcc----CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE---eCCcchHHHHHHHh
Q 022147 90 DSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKVL 162 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~----~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~---T~~~~~a~el~~~~ 162 (302)
+.+++..+.+++.+... +...++.+|.= |...+...|.+......++.|+.++++. ..+.++..+..+++
T Consensus 9 ~~a~~i~~~i~~~v~~l~~~~g~~p~La~i~v---g~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~l 85 (296)
T PRK14188 9 AFAADVRATVAAEVARLKAAHGVTPGLAVVLV---GEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARL 85 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCeEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34555666666654432 23334443332 3445566777788889999999987763 33444555556665
Q ss_pred hc-CCCceEEEE---cCCchHHHHHHHHhcCc
Q 022147 163 DL-SKYDGIVCV---SGDGILVEVVNGLLERE 190 (302)
Q Consensus 163 ~~-~~~d~IVvv---GGDGTl~evvngL~~~~ 190 (302)
.. ...|+|++- -..-.-.++++.+.-..
T Consensus 86 N~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~K 117 (296)
T PRK14188 86 NADPAIHGILVQLPLPKHLDSEAVIQAIDPEK 117 (296)
T ss_pred hCCCCCcEEEEeCCCCCCCCHHHHHhccCccc
Confidence 43 345677663 33344455666654443
No 314
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=48.30 E-value=1e+02 Score=30.39 Aligned_cols=47 Identities=17% Similarity=0.064 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV 146 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v 146 (302)
.+.|.+.|.+.++.. .+++-|+++|..|.+. ..+.++|+..|+++..
T Consensus 146 ~~~Y~~~l~~~i~~~--~~~lkVvvd~~~G~~~------~~~~~ll~~lG~~v~~ 192 (443)
T cd03089 146 LPDYIDRLLSDIKLG--KRPLKVVVDAGNGAAG------PIAPQLLEALGCEVIP 192 (443)
T ss_pred HHHHHHHHHHhcccc--cCCCeEEEECCCCchH------HHHHHHHHHCCCEEEE
Confidence 455778887776422 2678999999877653 2456778888886543
No 315
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=48.08 E-value=2.4e+02 Score=26.38 Aligned_cols=86 Identities=9% Similarity=-0.025 Sum_probs=48.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchH---HHHHHHhhcCCCceEEEEcCCchH-HHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA---KEIVKVLDLSKYDGIVCVSGDGIL-VEVV 183 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a---~el~~~~~~~~~d~IVvvGGDGTl-~evv 183 (302)
+.+++.+++ |.....--.. +.+.++..++..|+.+.+..+....++ .+..+.+...++|+||+++.|..- .+.+
T Consensus 45 ~t~~Igvv~-p~~~~~f~~~-~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l 122 (343)
T PRK10936 45 KAWKLCALY-PHLKDSYWLS-VNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTPDGLNPDL 122 (343)
T ss_pred CCeEEEEEe-cCCCchHHHH-HHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHH
Confidence 345666665 4433222222 335677778888888777655422222 244555556789999999877542 2344
Q ss_pred HHHhcCccccccCCccEEEe
Q 022147 184 NGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiI 203 (302)
.+.+. .+|+..+
T Consensus 123 -~~~~~-------giPvV~~ 134 (343)
T PRK10936 123 -ELQAA-------NIPVIAL 134 (343)
T ss_pred -HHHHC-------CCCEEEe
Confidence 33322 6777655
No 316
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=47.98 E-value=97 Score=30.62 Aligned_cols=50 Identities=10% Similarity=0.063 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~ 147 (302)
.+.+.+.|.+.+...-..+++-|+++|..|.+ . ..+..+|++.|+++...
T Consensus 156 ~~~Y~~~l~~~i~~~~~~~~lkVvvD~~nGa~--~----~~~~~ll~~lG~~v~~i 205 (446)
T PRK14324 156 IGRYIVHIKNSFPKDLTLKGLRIVLDTANGAA--Y----KVAPTVFSELGADVIVI 205 (446)
T ss_pred HHHHHHHHHHhcCCccCCCCCEEEEECCCchH--H----HHHHHHHHHcCCeEEEE
Confidence 45577777666642112357889999966643 3 24557788888876544
No 317
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=47.76 E-value=19 Score=30.77 Aligned_cols=75 Identities=24% Similarity=0.371 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHH------HHHHHhcCccccccCCccEEEec
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE------VVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e------vvngL~~~~~~~~~~~~plgiIP 204 (302)
..+...|++.+++++++.-.. ...+... ...++|+||+.||=|...+ +++.+.++ ++|+--|=
T Consensus 11 ~~l~~~l~~~~~~~~v~~~~~--~~~~~~~--~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~-------~~PilGIC 79 (192)
T PF00117_consen 11 HSLVRALRELGIDVEVVRVDS--DFEEPLE--DLDDYDGIIISGGPGSPYDIEGLIELIREARER-------KIPILGIC 79 (192)
T ss_dssp HHHHHHHHHTTEEEEEEETTG--GHHHHHH--HTTTSSEEEEECESSSTTSHHHHHHHHHHHHHT-------TSEEEEET
T ss_pred HHHHHHHHHCCCeEEEEECCC--chhhhhh--hhcCCCEEEECCcCCcccccccccccccccccc-------ceEEEEEe
Confidence 577888999998888776554 2222222 4568999999999887774 33333332 56765555
Q ss_pred CCChhhHHHhhhh
Q 022147 205 AGTGNGMIKSLLD 217 (302)
Q Consensus 205 ~GTgN~~A~sL~~ 217 (302)
.|- -.+|..+++
T Consensus 80 ~G~-Q~la~~~G~ 91 (192)
T PF00117_consen 80 LGH-QILAHALGG 91 (192)
T ss_dssp HHH-HHHHHHTTH
T ss_pred ehh-hhhHHhcCC
Confidence 543 666666643
No 318
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=47.56 E-value=2.3e+02 Score=26.05 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=47.3
Q ss_pred HHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHh-cCCcEEEEEe--CCcchHHHHHHHhhcCCCceEE
Q 022147 95 WCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIV 171 (302)
Q Consensus 95 w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~-ag~~~~v~~T--~~~~~a~el~~~~~~~~~d~IV 171 (302)
+...+-+++......+++.+|++....-++. +.+.+.+.+++ .|..+..... ....+....+.++...++|.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~v~~i~~~~~d~v~ 196 (332)
T cd06344 120 AARALAKYLKKKNKIKKVAIFYNSTSPYSQS---LKQEFTSALLERGGGIVVTPCDLSSPDFNANTAVSQAINNGATVLV 196 (332)
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCCCchHhHH---HHHHHHHHHHHhcCCeeeeeccCCCCCCCHHHHHHHHHhcCCCEEE
Confidence 4455555554433468898888764311222 22466677777 4665422111 1122344456666656788776
Q ss_pred EEcCCchHHHHHHHHhc
Q 022147 172 CVSGDGILVEVVNGLLE 188 (302)
Q Consensus 172 vvGGDGTl~evvngL~~ 188 (302)
+.+.-+.+..++..+..
T Consensus 197 ~~~~~~~~~~~~~~~~~ 213 (332)
T cd06344 197 LFPDTDTLDKALEVAKA 213 (332)
T ss_pred EeCChhHHHHHHHHHHh
Confidence 55433345555555443
No 319
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=47.35 E-value=2.2e+02 Score=25.80 Aligned_cols=78 Identities=8% Similarity=-0.017 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.+++.+|+...+.-+. .. .+.++..+++.|+++.... .....+...+++++...+.|.|++.+....+..++..+
T Consensus 135 ~~~v~ii~~~~~~~~~--~~-~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~ 211 (334)
T cd06347 135 AKKAAVLYDNSSDYSK--GL-AKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTEVGLIAKQA 211 (334)
T ss_pred CcEEEEEEeCCCchhH--HH-HHHHHHHHHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhhHHHHHHHH
Confidence 4688888743222222 22 2567777888887653221 23334556677777667889888877666666666666
Q ss_pred hcC
Q 022147 187 LER 189 (302)
Q Consensus 187 ~~~ 189 (302)
...
T Consensus 212 ~~~ 214 (334)
T cd06347 212 REL 214 (334)
T ss_pred HHc
Confidence 543
No 320
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=47.24 E-value=1.2e+02 Score=22.75 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=40.3
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
..|.|+++|-|+.. ....+...|...|.++-+..++.. ||.||+=.+=+.-....+.+.
T Consensus 2 i~~~~~kgG~Gkst--~~~~la~~~~~~~~~vl~~d~d~~--------------~d~viiD~p~~~~~~~~~~l~ 60 (104)
T cd02042 2 IAVANQKGGVGKTT--TAVNLAAALARRGKRVLLIDLDPQ--------------YDYIIIDTPPSLGLLTRNALA 60 (104)
T ss_pred EEEEeCCCCcCHHH--HHHHHHHHHHhCCCcEEEEeCCCC--------------CCEEEEeCcCCCCHHHHHHHH
Confidence 57899999999875 335677778878888877776654 787777655444334444443
No 321
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=47.17 E-value=98 Score=24.36 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=46.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
+|++++.. .|-+.+++.+.++..+++.|+++++..+.-. ++.......++|.|+ +|-+= .--.+.+-..
T Consensus 2 kkILlvCg----~G~STSlla~k~k~~~~e~gi~~~i~a~~~~----e~~~~~~~~~~DvIl-l~PQi--~~~~~~i~~~ 70 (104)
T PRK09590 2 KKALIICA----AGMSSSMMAKKTTEYLKEQGKDIEVDAITAT----EGEKAIAAAEYDLYL-VSPQT--KMYFKQFEEA 70 (104)
T ss_pred cEEEEECC----CchHHHHHHHHHHHHHHHCCCceEEEEecHH----HHHHhhccCCCCEEE-EChHH--HHHHHHHHHH
Confidence 56666654 3445557778999999999999887655432 233333334688544 44332 2222222221
Q ss_pred ccccccCCccEEEecC
Q 022147 190 EDWNDAIKVPLGVVPA 205 (302)
Q Consensus 190 ~~~~~~~~~plgiIP~ 205 (302)
- ...++|+.+||.
T Consensus 71 ~---~~~~ipv~~I~~ 83 (104)
T PRK09590 71 G---AKVGKPVVQIPP 83 (104)
T ss_pred h---hhcCCCEEEeCH
Confidence 0 013789999985
No 322
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=47.13 E-value=84 Score=28.44 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=20.2
Q ss_pred HHHHHhcCCcEEEEEeC-CcchHHHHHHHhhcCCCceEEE
Q 022147 134 KPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 134 ~~~L~~ag~~~~v~~T~-~~~~a~el~~~~~~~~~d~IVv 172 (302)
+..-++.|+++++++.. ...+..+..+++..+++|.||+
T Consensus 24 ~~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~ 63 (258)
T cd06353 24 KAAEKALGVEVTYVENVPEGADAERVLRELAAQGYDLIFG 63 (258)
T ss_pred HHHHHhcCCeEEEEecCCchHhHHHHHHHHHHcCCCEEEE
Confidence 33333345555555555 3444455555555556666665
No 323
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=47.04 E-value=84 Score=27.66 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=53.1
Q ss_pred HHHhhhhcc-CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhc-CCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC
Q 022147 98 KLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 98 ~l~~~l~~~-~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~a-g~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG 175 (302)
.|.+.+... .+..++++| |.+.. .... +...+...|+.. |+++....+.. ..+..+.+ ...|.|++-||
T Consensus 19 ~l~~~l~~~~~~~~~i~~I--ptAs~-~~~~-~~~~~~~a~~~l~G~~~~~~~~~~---~~~~~~~l--~~ad~I~l~GG 89 (212)
T cd03146 19 AIDDLLLSLTKARPKVLFV--PTASG-DRDE-YTARFYAAFESLRGVEVSHLHLFD---TEDPLDAL--LEADVIYVGGG 89 (212)
T ss_pred HHHHHHHHhccCCCeEEEE--CCCCC-CHHH-HHHHHHHHHhhccCcEEEEEeccC---cccHHHHH--hcCCEEEECCc
Confidence 344444433 234455444 33333 2222 346788889998 88776554433 11222333 35787777775
Q ss_pred CchHHHHHHHHhcCcccc-----ccCCccEEEecCCChhhHH
Q 022147 176 DGILVEVVNGLLEREDWN-----DAIKVPLGVVPAGTGNGMI 212 (302)
Q Consensus 176 DGTl~evvngL~~~~~~~-----~~~~~plgiIP~GTgN~~A 212 (302)
-....++.|.+..-.+ .....|++=+.+|....+-
T Consensus 90 --~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~ 129 (212)
T cd03146 90 --NTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFP 129 (212)
T ss_pred --hHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCC
Confidence 4455555554432100 0125677777777644443
No 324
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=46.93 E-value=28 Score=29.45 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
..+...|+..|.++.+.......+ .....++|+||+.||.+...+
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~------~~~~~~~dgvIl~Gg~~~~~~ 56 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTPLE------EIKLKNPKGIILSGGPSSVYE 56 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCChh------hhcccCCCEEEECCCcccccc
Confidence 356778888898887776654321 223457999999999876543
No 325
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=46.83 E-value=97 Score=26.68 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH--HHhcCccccccCCccEEEecCC
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN--GLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn--gL~~~~~~~~~~~~plgiIP~G 206 (302)
|...+...|...|.++.+...... ...+ +....+|.||+.||-|..++.-. .++++- ..++|+--|=.|
T Consensus 11 ft~~~~~~l~~~g~~v~v~~~~~~-~~~~----~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~----~~~~PvLGIC~G 81 (188)
T TIGR00566 11 FTYNLVQYFCELGAEVVVKRNDSL-TLQE----IEALLPLLIVISPGPCTPNEAGISLEAIRHF----AGKLPILGVCLG 81 (188)
T ss_pred HHHHHHHHHHHcCCceEEEECCCC-CHHH----HHhcCCCEEEEcCCCCChhhcchhHHHHHHh----ccCCCEEEECHH
Confidence 345667788888888776654322 2223 22236899999999999877322 222221 125666555554
Q ss_pred ChhhHHHhhh
Q 022147 207 TGNGMIKSLL 216 (302)
Q Consensus 207 TgN~~A~sL~ 216 (302)
- =.++..++
T Consensus 82 ~-Qll~~~~G 90 (188)
T TIGR00566 82 H-QAMGQAFG 90 (188)
T ss_pred H-HHHHHHcC
Confidence 3 34444443
No 326
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=46.81 E-value=2.3e+02 Score=26.65 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=45.5
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchH--HHHHHHhhcCCCceEEEEcCCch-HHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDGI-LVEVVN 184 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a--~el~~~~~~~~~d~IVvvGGDGT-l~evvn 184 (302)
..+++.++. ...+. .-.....+-++...++.|+++.+......... .++.+.+...++|+|++.+-|.+ +..+++
T Consensus 22 ~~~~i~~v~-k~~~~-pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~ 99 (336)
T PRK15408 22 AAERIAFIP-KLVGV-GFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALK 99 (336)
T ss_pred CCcEEEEEE-CCCCC-HHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHH
Confidence 345666665 22222 21212335667778888877765322222222 24556666678999999987754 456777
Q ss_pred HHhcC
Q 022147 185 GLLER 189 (302)
Q Consensus 185 gL~~~ 189 (302)
.+.+.
T Consensus 100 ~a~~~ 104 (336)
T PRK15408 100 RAMQR 104 (336)
T ss_pred HHHHC
Confidence 66554
No 327
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=46.78 E-value=2.4e+02 Score=26.17 Aligned_cols=78 Identities=15% Similarity=-0.053 Sum_probs=51.0
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE--EeCCcchHHHHHHHhhcCCCceEEEEcCCc-hHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVN 184 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~--~T~~~~~a~el~~~~~~~~~d~IVvvGGDG-Tl~evvn 184 (302)
..+++.+|+....- ++ ... +.++..+++.|.++... ......+....+.++...+.|.|++++-.. ....+++
T Consensus 137 ~~~~v~il~~d~~~-g~--~~~-~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~ 212 (347)
T cd06336 137 GGKKVALLGPNDAY-GQ--PWV-AAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGGPSPAPAALVIK 212 (347)
T ss_pred CCceEEEEccCCch-hH--HHH-HHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcCCCEEEEcCCCchHHHHHHH
Confidence 46788888855442 22 233 57788888888765321 122234556667777667899988776666 7888888
Q ss_pred HHhcC
Q 022147 185 GLLER 189 (302)
Q Consensus 185 gL~~~ 189 (302)
.+...
T Consensus 213 ~~~~~ 217 (347)
T cd06336 213 QAREL 217 (347)
T ss_pred HHHHc
Confidence 88665
No 328
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=46.62 E-value=2.5e+02 Score=26.33 Aligned_cols=78 Identities=9% Similarity=-0.012 Sum_probs=49.8
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC--CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~--~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+|+.+|++-.. -++. .. +.++..+++.|+++.....- ...+....+.++...++|.|++.+-......+++.
T Consensus 139 ~~~kvaiv~~~~~-~g~~--~~-~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~ 214 (351)
T cd06334 139 KGKKIALVYHDSP-FGKE--PI-EALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKE 214 (351)
T ss_pred CCCeEEEEeCCCc-cchh--hH-HHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccchHHHHHHH
Confidence 3688888875332 2222 22 56778899999876433221 22345556666666789999887776677777887
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 215 ~~~~ 218 (351)
T cd06334 215 AKRV 218 (351)
T ss_pred HHHc
Confidence 7655
No 329
>PRK12412 pyridoxal kinase; Reviewed
Probab=46.40 E-value=47 Score=30.24 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCCceEEEEcCC-chHHHHHHHHhcCccccccCCccEEEec-CCChhhHHHhhh
Q 022147 155 AKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVP-AGTGNGMIKSLL 216 (302)
Q Consensus 155 a~el~~~~~~~~~d~IVvvGGD-GTl~evvngL~~~~~~~~~~~~plgiIP-~GTgN~~A~sL~ 216 (302)
..+.++.+...+...|++=||. |.-....+.+............++-... .|+|..|+..+.
T Consensus 157 ~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa~a 220 (268)
T PRK12412 157 MKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAIT 220 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHHHH
Confidence 4445555544456667777765 4211111112221110000111222233 699999988764
No 330
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=45.93 E-value=1.2e+02 Score=25.45 Aligned_cols=98 Identities=18% Similarity=0.321 Sum_probs=57.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCc---EEEEEeCCcchHHHHHHHhhc-CCCceEEEEc----CCch-
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLDL-SKYDGIVCVS----GDGI- 178 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~---~~v~~T~~~~~a~el~~~~~~-~~~d~IVvvG----GDGT- 178 (302)
...|+.|++-.+-. .-..+.. +-....|..+|+. ++++.....-+.--.++.+.. .+||+||+.| |+-.
T Consensus 6 ~~~ri~IV~s~fn~-~I~~~Ll-~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H 83 (141)
T PLN02404 6 EGLRFGVVVARFNE-IITKNLL-EGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTH 83 (141)
T ss_pred CCCEEEEEEecCcH-HHHHHHH-HHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCch
Confidence 45688888765433 2223333 4566778888875 566655555555555555543 5799999988 5433
Q ss_pred ----HHHHHHHHhcCccccccCCccEEEecCCCh
Q 022147 179 ----LVEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 179 ----l~evvngL~~~~~~~~~~~~plgiIP~GTg 208 (302)
-+++.+||++-.- +...++-+|+|-.++.
T Consensus 84 ~e~V~~~v~~gl~~vsl-~~~~PV~~GVLt~~~~ 116 (141)
T PLN02404 84 YDAVANSAASGVLSAGL-NSGVPCIFGVLTCDDM 116 (141)
T ss_pred hHHHHHHHHHHHHHHHh-ccCCCEEEEEcCCCCH
Confidence 4566777765421 1123455677766553
No 331
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=45.83 E-value=59 Score=26.78 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCch-----HHHHHHHH
Q 022147 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGL 186 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGT-----l~evvngL 186 (302)
..++..|++.|+++.... .+..+...+..+++. .++|.||+.||=|. ..+++..+
T Consensus 30 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~-~~~DliIttGG~g~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 30 PLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAV-DEADVVLTTGGTGVGPRDVTPEALEEL 91 (144)
T ss_pred HHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHH-hCCCEEEECCCCCCCCCccHHHHHHHh
Confidence 467888999998765433 233333334333332 47999999998664 45555554
No 332
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=45.58 E-value=1.5e+02 Score=25.48 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=52.2
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchH---HHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL---VEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl---~evvngL 186 (302)
||++||=|--+ |...+...|++.|.++++..... .+. ..+ ..+|.||+.||-|.- .+... +
T Consensus 2 ~~iliid~~ds--------f~~~i~~~l~~~g~~~~v~~~~~-~~~----~~l--~~~d~iIi~gGp~~~~~~~~~~~-~ 65 (190)
T PRK06895 2 TKLLIINNHDS--------FTFNLVDLIRKLGVPMQVVNVED-LDL----DEV--ENFSHILISPGPDVPRAYPQLFA-M 65 (190)
T ss_pred cEEEEEeCCCc--------hHHHHHHHHHHcCCcEEEEECCc-cCh----hHh--ccCCEEEECCCCCChHHhhHHHH-H
Confidence 57777777322 22357888999999888876432 111 222 368999999999942 22222 2
Q ss_pred hcCccccccCCccEEEecCCChhhHHHhhhh
Q 022147 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLD 217 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~ 217 (302)
++. . ..+.|+--|=.|-- .+|..+++
T Consensus 66 i~~--~--~~~~PiLGIClG~Q-lla~~~Gg 91 (190)
T PRK06895 66 LER--Y--HQHKSILGVCLGHQ-TLCEFFGG 91 (190)
T ss_pred HHH--h--cCCCCEEEEcHHHH-HHHHHhCC
Confidence 221 0 12567766777754 77777753
No 333
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=45.53 E-value=1.1e+02 Score=30.23 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~ 147 (302)
...|.+.|.+.++..-+.+++-|++.+..|.. . ..+.++|+..|+++..+
T Consensus 157 ~~~Y~~~l~~~id~~i~~~~lkVvvD~~~G~~--~----~~~~~ll~~lG~~v~~i 206 (448)
T PRK14315 157 HGRYIEFAKRTLPRDLRLDGLRVVVDCANGAA--Y----KVAPEALWELGAEVITI 206 (448)
T ss_pred HHHHHHHHHHhcccccccCCCEEEEECCCchH--H----HHHHHHHHHcCCeEEEe
Confidence 45577777776652223357889999977643 2 24567788888875443
No 334
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=45.50 E-value=65 Score=32.39 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=11.3
Q ss_pred CceEEEEcCCchHHHHHHHHhc
Q 022147 167 YDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 167 ~d~IVvvGGDGTl~evvngL~~ 188 (302)
.|.||..=|+-|+.++++.|..
T Consensus 116 vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 116 IDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred ccEEEeCCcHHHHHHHHHHHHc
Confidence 3444444445555566665543
No 335
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=45.40 E-value=1.5e+02 Score=27.05 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=47.0
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE---EEEeC-CcchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT---VQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~---v~~T~-~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
..+++.+|..|......+...+ +-+...|+++|+.+. +.... ....+.+.++++....+|+|+ +.+|.+-..++
T Consensus 175 G~~~I~~i~g~~~~~~~~~~R~-~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~ai~-~~~d~~A~g~~ 252 (329)
T TIGR01481 175 GHKSIAFVGGPLSDSINGEDRL-EGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGSLPTAVF-VASDEMAAGIL 252 (329)
T ss_pred CCCeEEEEecCcccccchHHHH-HHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCCCCCEEE-EcCcHHHHHHH
Confidence 4568888765543221222223 456677888887542 22222 234455666666444566554 57898888899
Q ss_pred HHHhcC
Q 022147 184 NGLLER 189 (302)
Q Consensus 184 ngL~~~ 189 (302)
+.|.+.
T Consensus 253 ~al~~~ 258 (329)
T TIGR01481 253 NAAMDA 258 (329)
T ss_pred HHHHHc
Confidence 998765
No 336
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=45.27 E-value=61 Score=28.02 Aligned_cols=77 Identities=16% Similarity=0.078 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHH--HHHHhcCccccccCCccEEEecCCC
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV--VNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev--vngL~~~~~~~~~~~~plgiIP~GT 207 (302)
...+..+|++.|+.++++..... +..++ ...++|.||+.||.|..++. ...+.+. ....+|+--|=.|-
T Consensus 12 t~~~~~~l~~~g~~~~~~~~~~~-~~~~~----~~~~~~~iilsgGp~~~~~~~~~~~~i~~----~~~~~PiLGIClG~ 82 (193)
T PRK08857 12 TYNLYQYFCELGAQVKVVRNDEI-DIDGI----EALNPTHLVISPGPCTPNEAGISLQAIEH----FAGKLPILGVCLGH 82 (193)
T ss_pred HHHHHHHHHHCCCcEEEEECCCC-CHHHH----hhCCCCEEEEeCCCCChHHCcchHHHHHH----hcCCCCEEEEcHHH
Confidence 34677888989999888765432 22222 22358999999999998752 1122211 01256666555554
Q ss_pred hhhHHHhhh
Q 022147 208 GNGMIKSLL 216 (302)
Q Consensus 208 gN~~A~sL~ 216 (302)
=.+|..++
T Consensus 83 -Qlia~a~G 90 (193)
T PRK08857 83 -QAIAQVFG 90 (193)
T ss_pred -HHHHHHhC
Confidence 34555554
No 337
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=45.17 E-value=2e+02 Score=26.05 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=26.9
Q ss_pred CCCceEEEEcCCchHHHHHHH----HhcCccccccCCccEEEecC-CChhhHHHhh
Q 022147 165 SKYDGIVCVSGDGILVEVVNG----LLEREDWNDAIKVPLGVVPA-GTGNGMIKSL 215 (302)
Q Consensus 165 ~~~d~IVvvGGDGTl~evvng----L~~~~~~~~~~~~plgiIP~-GTgN~~A~sL 215 (302)
.+-+++++.+||=++...... |.... ..+++=+||+ -|.+..|..+
T Consensus 91 ~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~-----~~~~veivPGIss~~a~aa~~ 141 (238)
T PRK05948 91 QGEDVAFACEGDVSFYSTFTYLAQTLQELY-----PQVAIQTIPGVCSPLAAAAAL 141 (238)
T ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHHhcC-----CCCCEEEECChhHHHHHHHHh
Confidence 466899999999666554444 43321 1456667776 3344444444
No 338
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=45.16 E-value=51 Score=33.93 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=70.4
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCc--hhhhHHHHHHHHHHhcCCcEEEEEe-----CC
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKI--ASKIFLDDVKPLLEDANIQFTVQET-----TQ 151 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~--a~~~~~~~v~~~L~~ag~~~~v~~T-----~~ 151 (302)
+--+.+.-.++.-...=+..+-+.+.......+++-+.|-..|=-+ -..+-.+.+..+....|.+. .-| +.
T Consensus 98 ~IGIv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dl--LGS~R~k~~~ 175 (568)
T PLN02251 98 KIGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDM--ICSGRDKIET 175 (568)
T ss_pred eEEEECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceE--ecccCCCcCC
Confidence 3445555444443322222232333222334577777775554322 22222334555555555422 211 23
Q ss_pred cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhh
Q 022147 152 QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 152 ~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
+++-.++.+.+...+.|.+|++|||||...+.. |.+.-. +...++++.-+|.==-||+..+.
T Consensus 176 ~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~-Lae~~~-~~g~~i~VIGVPKTIDNDL~~td 237 (568)
T PLN02251 176 PEQFKQAEETATKLDLDGLVVIGGDDSNTNACL-LAEYFR-AKNLKTRVIGCPKTIDGDLKSKE 237 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHHH-hcCCCeeEEEeCceEeCCCCCCc
Confidence 344556666666678999999999999766532 222100 01235888888987788887654
No 339
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=45.09 E-value=93 Score=26.18 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=44.3
Q ss_pred EEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHHHHHHHHhc
Q 022147 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGLLE 188 (302)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~evvngL~~ 188 (302)
++||+= |..|..+++. +.+...|.. ..++++....... . +..+||.|+++. |+|-+.+.+..++.
T Consensus 2 i~IiY~--S~tGnTe~vA-~~Ia~~l~~--~~~~i~~~~~~~~-----~--~l~~~d~ii~gspty~~g~~p~~~~~fl~ 69 (167)
T TIGR01752 2 IGIFYG--TDTGNTEGIA-EKIQKELGE--DDVDVFNIAKASK-----E--DLNAYDKLILGTPTWGVGELQEDWEDFLP 69 (167)
T ss_pred EEEEEE--CCCChHHHHH-HHHHHHhCC--CceEEEEcccCCH-----h--HHhhCCEEEEEecCCCCCcCcHHHHHHHH
Confidence 566663 4556666554 577777764 3345444433221 1 234789888888 78976654444332
Q ss_pred CccccccCCccEEEecCC
Q 022147 189 REDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~G 206 (302)
.-........+++++-+|
T Consensus 70 ~l~~~~l~gk~v~~fg~g 87 (167)
T TIGR01752 70 TLEELDFTGKTVALFGLG 87 (167)
T ss_pred HhhcCCCCCCEEEEEecC
Confidence 210011124677766554
No 340
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=44.70 E-value=1.2e+02 Score=30.10 Aligned_cols=51 Identities=6% Similarity=-0.009 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE
Q 022147 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~ 147 (302)
..+.|.+.|.+.++..-+.+++-|++++..|.+. ..+.++|+..|+++...
T Consensus 168 ~~~~Y~~~l~~~id~~i~~~~~kVvvD~~nG~~~------~~~~~ll~~LG~~v~~l 218 (465)
T PRK14317 168 LLDDYRDALLESLPDRVNLQGVKIVLDLAWGAAV------ACAPEVFKALGAEVICL 218 (465)
T ss_pred hHHHHHHHHHHhcCcccccCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEE
Confidence 3456777777766421133578899999766543 24567788888876544
No 341
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=44.66 E-value=2.5e+02 Score=25.60 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=46.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE--EeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~--~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.+|+.+|.... . .+.... +.++..+++.|+++... ......+....+.++...++|.|++.+-+.....+++.+
T Consensus 136 ~~~v~~l~~~~-~--~~~~~~-~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i~~~ 211 (336)
T cd06326 136 LKRIAVFYQDD-A--FGKDGL-AGVEKALAARGLKPVATASYERNTADVAAAVAQLAAARPQAVIMVGAYKAAAAFIRAL 211 (336)
T ss_pred CceEEEEEecC-c--chHHHH-HHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHH
Confidence 57888876532 2 222233 57778888888765332 122224555666666556688777666444567788887
Q ss_pred hcC
Q 022147 187 LER 189 (302)
Q Consensus 187 ~~~ 189 (302)
.+.
T Consensus 212 ~~~ 214 (336)
T cd06326 212 RKA 214 (336)
T ss_pred Hhc
Confidence 665
No 342
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.54 E-value=1.4e+02 Score=26.16 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGD 176 (302)
+.+...+++.|+.+.+..+..... ..++.+.+...+.|+|++.+.|
T Consensus 19 ~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~ 65 (265)
T cd06290 19 KGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGGD 65 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 455666666666655544432221 1234445555567777777655
No 343
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.39 E-value=2.7e+02 Score=26.11 Aligned_cols=99 Identities=13% Similarity=0.157 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhhhcc---CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhh
Q 022147 90 DSKRLWCEKLRDFIDSF---GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLD 163 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~---~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~ 163 (302)
+.++++.+.+++.+... ++..++.+|.= |...+...|.+.....+++.|+.++.+.-. ..++..+..+++.
T Consensus 10 ~va~~i~~~lk~~i~~l~~~g~~p~Laii~v---g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN 86 (285)
T PRK14189 10 ALSKQLRAEAAQRAAALTARGHQPGLAVILV---GDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELN 86 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEe---CCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHc
Confidence 45566666666655432 33334443332 344566678888889999999999876633 2344455556554
Q ss_pred c-CCCceEEEE---cCCchHHHHHHHHhcCcc
Q 022147 164 L-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (302)
Q Consensus 164 ~-~~~d~IVvv---GGDGTl~evvngL~~~~~ 191 (302)
. ...|+|++- -..-.-.++++.+.-..|
T Consensus 87 ~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KD 118 (285)
T PRK14189 87 RDPKIHGILVQLPLPKHIDSHKVIEAIAPEKD 118 (285)
T ss_pred CCCCCCeEEEeCCCCCCCCHHHHHhhcCcccC
Confidence 3 345676653 233444556666644433
No 344
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=44.14 E-value=1.3e+02 Score=29.56 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE
Q 022147 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~ 147 (302)
....|.+.|.+.++..-+.+++-|++.+..|.+ .. .+..+|+..|+++...
T Consensus 152 ~~~~Y~~~l~~~i~~~~~~~~lkVvvD~~~G~~--~~----~~~~ll~~lg~~v~~i 202 (443)
T TIGR01455 152 AVGRYIEFLKSTLPRGLTLSGLKVVLDCANGAA--YK----VAPHVFRELGAEVIAI 202 (443)
T ss_pred HHHHHHHHHHHHhhcccccCCCEEEEECCCchH--HH----HHHHHHHHcCCEEEEE
Confidence 345678888777652123357889999977653 32 3456788878765433
No 345
>PLN02285 methionyl-tRNA formyltransferase
Probab=44.05 E-value=29 Score=33.17 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=37.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE-EeCCcchHHHHHHHhhcCCCceEEEEc
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~-~T~~~~~a~el~~~~~~~~~d~IVvvG 174 (302)
.-++|+-||..-.++..+....-++....++|+.+.++ ..+...+. ++.+.+...++|.+|++|
T Consensus 37 ~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~~-~~~~~l~~~~~Dliv~~~ 101 (334)
T PLN02285 37 EVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGEE-DFLSALRELQPDLCITAA 101 (334)
T ss_pred eEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCCH-HHHHHHHhhCCCEEEhhH
Confidence 45677788866545544443345777778889985432 22222221 334445555799998886
No 346
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=44.00 E-value=2.6e+02 Score=25.66 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=50.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC--CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~--~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.+++.+++..... ++. .. +.+...+++.|+++.-..+- ...+...+++++...+.|.|++++.+.-+..++..+
T Consensus 141 ~~~v~~v~~~~~~-g~~--~~-~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~~~~~~~~~~ 216 (345)
T cd06338 141 PKKVAILYADDPF-SQD--VA-EGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFPDAVLLVRQM 216 (345)
T ss_pred CceEEEEecCCcc-cHH--HH-HHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcchhHHHHHHHH
Confidence 5778877654322 222 22 56777888888876432221 223555667777767899999888888777888777
Q ss_pred hcC
Q 022147 187 LER 189 (302)
Q Consensus 187 ~~~ 189 (302)
.+.
T Consensus 217 ~~~ 219 (345)
T cd06338 217 KEL 219 (345)
T ss_pred HHc
Confidence 654
No 347
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=43.91 E-value=28 Score=26.62 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.2
Q ss_pred eeEEecCCChHHHHHHHHHHHhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDF 102 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~ 102 (302)
+.+.|...|+++.+.|+++|+..
T Consensus 71 r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 71 EVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred cEEEEECCCHHHHHHHHHHHHhh
Confidence 57899999999999999998753
No 348
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=43.73 E-value=1e+02 Score=22.80 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=36.6
Q ss_pred EEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCC
Q 022147 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGD 176 (302)
+|+....+...... +...+...|+.+|+.+++.. .......-.+.+...++..++++|-+
T Consensus 3 ~Ii~~~~~~~~~~~-~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 3 VIIPVGKKDEEIIE-YAQELANKLRKAGIRVELDD--SDKSLGKQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp EEEESSCSHHHHHH-HHHHHHHHHHHTTSEEEEES--SSSTHHHHHHHHHHTTESEEEEEEHH
T ss_pred EEEEeCCCcHHHHH-HHHHHHHHHHHCCCEEEEEC--CCCchhHHHHHHhhcCCeEEEEECch
Confidence 34444443222332 34678888999998776654 33344444555566688889988854
No 349
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=43.57 E-value=1.7e+02 Score=24.68 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
++.++......|++++.+.+.+.++..+...+.. .++|+||+
T Consensus 32 ~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~-~~~dgiiI 73 (146)
T PRK05395 32 EALLEEEAAELGVELEFFQSNHEGELIDRIHEAR-DGADGIII 73 (146)
T ss_pred HHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcc-cCCcEEEE
Confidence 4555666666789999999999998888777764 35777774
No 350
>PRK11175 universal stress protein UspE; Provisional
Probab=43.29 E-value=1.6e+02 Score=26.76 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=37.0
Q ss_pred HHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc-CCchHHHHH-----HHHhcCccccccCCccEEEecCCCh
Q 022147 136 LLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVEVV-----NGLLEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 136 ~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG-GDGTl~evv-----ngL~~~~~~~~~~~~plgiIP~GTg 208 (302)
.+...+++++........-+..+.+.+...++|.||+.. |.+.+.+.+ ..|+.+ .++|+-++|-+.-
T Consensus 77 ~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~------~~~pvlvv~~~~~ 149 (305)
T PRK11175 77 PYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRK------CPCPVLMVKDQDW 149 (305)
T ss_pred HHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhc------CCCCEEEeccccc
Confidence 344567766654332212233455555556788665542 334455543 445444 3799999998643
No 351
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=43.28 E-value=1.2e+02 Score=29.66 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE
Q 022147 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~ 147 (302)
..+.+.+.+.+.++... .+.+-|++.+..|.+. ..+.++|+..|+++..+
T Consensus 145 ~~~~Y~~~l~~~~~~~~-~~~lkIvid~~~G~~~------~~~~~~l~~lg~~v~~~ 194 (439)
T cd03087 145 AIDEYIEAILDKVDIDG-GKGLKVVVDCGNGAGS------LTTPYLLRELGCKVITL 194 (439)
T ss_pred cHHHHHHHHHHhcCccc-CCCCEEEEECCCCchH------HHHHHHHHHcCCEEEEE
Confidence 34557777766664221 3578899999777553 24567788888876544
No 352
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=42.97 E-value=34 Score=26.65 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.1
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhhh
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
.+++++...++++-+.|.+.|++++.
T Consensus 73 ~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 47899999999999999999998764
No 353
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=42.89 E-value=2.6e+02 Score=25.38 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=40.2
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCC
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGD 176 (302)
+.+.+.+++...+. .-...++ +.+...+.+.|..+.+..+... +...+..+.+...+.|++|+.+.+
T Consensus 58 ~~~~Ig~i~~~~~~-~~~~~~~-~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~~ 125 (311)
T TIGR02405 58 SDKVVAVIVSRLDS-PSENLAV-SGMLPVFYTAGYDPIIMESQFSPQLTNEHLSVLQKRNVDGVILFGFT 125 (311)
T ss_pred CCCEEEEEeCCccc-ccHHHHH-HHHHHHHHHCCCeEEEecCCCChHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 44567777732222 1222233 5778888889988766655432 222344555555679999998765
No 354
>PRK12616 pyridoxal kinase; Reviewed
Probab=42.81 E-value=64 Score=29.43 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=10.7
Q ss_pred CCChhhHHHhhhh
Q 022147 205 AGTGNGMIKSLLD 217 (302)
Q Consensus 205 ~GTgN~~A~sL~~ 217 (302)
.|||..|+..+..
T Consensus 212 ~GaGD~fsaalaa 224 (270)
T PRK12616 212 HGAGCTFSAAVTA 224 (270)
T ss_pred CcHHHHHHHHHHH
Confidence 7999999888753
No 355
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=42.73 E-value=1.2e+02 Score=26.73 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=40.5
Q ss_pred cEEEEEEcCCCCCCc---hhhhHHHHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKI---ASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~---a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
.+-+|++||.++... ....| .++...|...+ +.++..-.+++ ..++++++.....+.++..-|.-+|.|++-.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~-~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKW-AELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHH-HHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHH-HHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 345788899887622 12234 35556666666 56666666666 5666666653222225555667788888777
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+...
T Consensus 181 i~~a 184 (247)
T PF01075_consen 181 ISRA 184 (247)
T ss_dssp HHTS
T ss_pred HhcC
Confidence 7554
No 356
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=42.62 E-value=1.5e+02 Score=29.16 Aligned_cols=48 Identities=19% Similarity=0.136 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE
Q 022147 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT 145 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~ 145 (302)
..+.+.+.|.+.++.. .-+.+-|++.|..|.+.. .+.++|+..|+++.
T Consensus 145 ~~~~Y~~~l~~~i~~~-~i~~lkVvvd~~~Ga~~~------~~~~ll~~lg~~vv 192 (445)
T PRK09542 145 VLADYAAFLRSLVDLS-GIRPLKVAVDAGNGMGGH------TVPAVLGGLPITLL 192 (445)
T ss_pred hHHHHHHHHHHhcccc-cCCCCEEEEECCCCchhH------HHHHHHHhCCCEEE
Confidence 3456777777766421 114688999997775432 34567777776654
No 357
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.56 E-value=2.9e+02 Score=25.92 Aligned_cols=123 Identities=20% Similarity=0.188 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhhhcc----CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHh
Q 022147 90 DSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~----~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~ 162 (302)
+.+++..+.+++.+... +...++.+|.= |...+...|.+.....+++.|+.++.+.-. ..++..+..+++
T Consensus 15 ~iA~~i~~~l~~~i~~l~~~~g~~P~Laii~v---g~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~L 91 (287)
T PRK14176 15 ALAKKIEAEVRSGVERLKSNRGITPGLATILV---GDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSL 91 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeEEEEEE---CCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34555555555554322 22334443332 344566678788889999999998766543 233444555665
Q ss_pred hc-CCCceEEEE---cCCchHHHHHHHHhcCccccccCCc--------cEEEecCCChhhHHHhhh
Q 022147 163 DL-SKYDGIVCV---SGDGILVEVVNGLLEREDWNDAIKV--------PLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 163 ~~-~~~d~IVvv---GGDGTl~evvngL~~~~~~~~~~~~--------plgiIP~GTgN~~A~sL~ 216 (302)
.. ...|+|++- -..=.-.++++.+.-..|-+-.... .-+++|| |..+...-|.
T Consensus 92 N~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~Pc-Tp~av~~ll~ 156 (287)
T PRK14176 92 NKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIGDEGLVPC-TPHGVIRALE 156 (287)
T ss_pred hCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcCCCCCCCC-cHHHHHHHHH
Confidence 43 345676653 2233345566666444332211111 1146777 7777776664
No 358
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=42.50 E-value=26 Score=28.80 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=29.7
Q ss_pred HhhcCCCceEEEEcCCchHH------HHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 161 VLDLSKYDGIVCVSGDGILV------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 161 ~~~~~~~d~IVvvGGDGTl~------evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
++....||.|++.||.|... +.+..+++.- .....+|+.|-.|. ..+++.
T Consensus 32 ~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~---~~~~k~iaaIC~g~-~~L~~~ 87 (147)
T PF01965_consen 32 EIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEF---YEAGKPIAAICHGP-AVLAAA 87 (147)
T ss_dssp GHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHH---HHTT-EEEEETTCH-HHHHHT
T ss_pred HCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHH---HHcCCeEEecCCCc-chhhcc
Confidence 34445799999999988322 2222332221 01278999999998 666665
No 359
>PRK06455 riboflavin synthase; Provisional
Probab=42.38 E-value=1.6e+02 Score=25.16 Aligned_cols=75 Identities=13% Similarity=0.014 Sum_probs=43.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhc--CCcEEEEEeCCcchHHHHHHHhh-cCCCceEEEEc--CCch-----
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQETTQQLHAKEIVKVLD-LSKYDGIVCVS--GDGI----- 178 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~a--g~~~~v~~T~~~~~a~el~~~~~-~~~~d~IVvvG--GDGT----- 178 (302)
++|+.|+.-.++-. ... +-....|... +.+++++..-..-+.--.++.+. ..+||+||+.| |+|-
T Consensus 1 ~~kigIV~s~fn~~----~L~-~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~V 75 (155)
T PRK06455 1 MMKIGIADTTFARV----DMG-SAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYC 75 (155)
T ss_pred CcEEEEEEEecchH----HHH-HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhH
Confidence 35777877665542 222 4455566663 35565555544445555565554 35799999877 4433
Q ss_pred HHHHHHHHhc
Q 022147 179 LVEVVNGLLE 188 (302)
Q Consensus 179 l~evvngL~~ 188 (302)
-+++.+||++
T Consensus 76 a~~vS~GL~~ 85 (155)
T PRK06455 76 AHEASIGLIM 85 (155)
T ss_pred HHHHHHHHHH
Confidence 3455555544
No 360
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=42.08 E-value=41 Score=37.85 Aligned_cols=133 Identities=14% Similarity=0.181 Sum_probs=70.4
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCch--hhhHHHHHHHHHHhcCCcE---EEEEeCCcc
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQF---TVQETTQQL 153 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a--~~~~~~~v~~~L~~ag~~~---~v~~T~~~~ 153 (302)
+--+.+.-.++.-...=+..+-+.+.......+++-|.|-..|=-+. ..+-...+..+...-|..+ .-...+..+
T Consensus 104 rIGILtSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee 183 (1328)
T PTZ00468 104 RIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEE 183 (1328)
T ss_pred EEEEECcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHH
Confidence 34444544444422222223333333223345788888766653222 2222234556655555321 001112334
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+..++.+.+...+.|.+|++|||||+..+.. |.+.-. +...++++.-||.==-||+..
T Consensus 184 ~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~-LaEy~~-~~g~~I~VIGIPKTIDNDL~g 241 (1328)
T PTZ00468 184 QMRASLEICEKLKLHGLVVIGGDDSNTNAAV-LAEYFK-RNSSSTVVVGCPKTIDGDLKN 241 (1328)
T ss_pred HHHHHHHHHHHhCCCEEEEECCchHHHHHHH-HHHHHH-hcCCCeeEEEEeEEEcCCCCC
Confidence 4455556666678999999999999865432 322100 012368999999888899974
No 361
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=42.06 E-value=1.3e+02 Score=28.55 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=41.0
Q ss_pred CCCcEEEEEE--c-CCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCc
Q 022147 107 GRPKRLYIFV--N-PFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 107 ~r~~r~~viv--N-P~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDG 177 (302)
-++.|+.||. | +..|.- .......++..|+..|+++.... .++.+...+..+++...++|.||+-||=|
T Consensus 157 ~r~~rv~II~TG~Ev~~G~i--~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 157 FRPLRVGLIVTGSEVYGGRI--EDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred cCCCEEEEEEcCCcCCCCcE--EEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 3566788876 4 333432 22234578888999998764332 33333334444444334589999999855
No 362
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=42.00 E-value=44 Score=27.64 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCchH--------HHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 165 SKYDGIVCVSGDGIL--------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 165 ~~~d~IVvvGGDGTl--------~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
..||.|++.||.+.- .+.++.... ...+|+-|-.|.- -+|+.
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~-------~~~~i~~ic~G~~-~La~a 110 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAE-------AGKPVAAICHGPW-VLISA 110 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHH-------cCCeEEEEchHHH-HHHhc
Confidence 368999999996532 122222222 2678888877763 45443
No 363
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=41.95 E-value=1.2e+02 Score=29.64 Aligned_cols=68 Identities=9% Similarity=-0.029 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHhhhh--------c---cCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHH
Q 022147 88 SEDSKRLWCEKLRDFID--------S---FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK 156 (302)
Q Consensus 88 ~~~~~~~w~~~l~~~l~--------~---~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~ 156 (302)
+.++...|.+.+.+... . .+..+++..|.|.++|-||.-.. -.+.-.|...|.++-++-.+..+.+.
T Consensus 88 t~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta--~nLA~~LA~~G~rVLlIDlDpQ~~lt 165 (405)
T PRK13869 88 TLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTS--AHLAQYLALQGYRVLAVDLDPQASLS 165 (405)
T ss_pred cHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHH--HHHHHHHHhcCCceEEEcCCCCCCHH
Confidence 55778889888865211 0 11234899999999999997533 46777888899888888777766654
Q ss_pred H
Q 022147 157 E 157 (302)
Q Consensus 157 e 157 (302)
.
T Consensus 166 ~ 166 (405)
T PRK13869 166 A 166 (405)
T ss_pred H
Confidence 4
No 364
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=41.52 E-value=1.8e+02 Score=24.13 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=10.1
Q ss_pred cCCchHHHHHHHHhc
Q 022147 174 SGDGILVEVVNGLLE 188 (302)
Q Consensus 174 GGDGTl~evvngL~~ 188 (302)
=|.=++.|+++.|..
T Consensus 117 ~G~~~~~ell~~L~~ 131 (136)
T cd02990 117 QGNTGVDELLMRLIE 131 (136)
T ss_pred ECCCCHHHHHHHHHH
Confidence 366677777777754
No 365
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.47 E-value=2.8e+02 Score=25.27 Aligned_cols=77 Identities=10% Similarity=-0.025 Sum_probs=48.4
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE--EeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~--~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.+|+.+|+.-. .-++ .. .+.++..+++.|+++.-. ......+....+.++...++|.|++++.......+++.+
T Consensus 137 ~~~vail~~~~-~~g~--~~-~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~ 212 (312)
T cd06346 137 YKSVATTYINN-DYGV--GL-ADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPETGSGILRSA 212 (312)
T ss_pred CCeEEEEEccC-chhh--HH-HHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccchHHHHHHHH
Confidence 57888887432 2222 22 357778888889875322 222334555667777667899998887655666667776
Q ss_pred hcC
Q 022147 187 LER 189 (302)
Q Consensus 187 ~~~ 189 (302)
.+.
T Consensus 213 ~~~ 215 (312)
T cd06346 213 YEQ 215 (312)
T ss_pred HHc
Confidence 554
No 366
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=41.42 E-value=30 Score=26.65 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=21.6
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhh
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFI 103 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l 103 (302)
.+.+.|.+.|+++.+.|+++|+..+
T Consensus 74 ~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 74 HRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 4679999999999999999997754
No 367
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=41.41 E-value=3e+02 Score=25.70 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=52.8
Q ss_pred CcEEEEEE-cCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 109 ~~r~~viv-NP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
.+++.++. |-..|+.-+. .+ ......|++.|.++...+. ....+...++.++...++|.|++++-......++..
T Consensus 145 ~k~v~ii~~~~~~g~~~~~-~~-~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~~~~~~~~~~~~~ 222 (357)
T cd06337 145 NKKVGILYPNDPDGNAFAD-PV-IGLPAALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGFAIPPDFATFWRQ 222 (357)
T ss_pred CceEEEEeecCchhHHHHH-hh-hcccHHHHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeCCCccHHHHHHHH
Confidence 57777775 3223332222 12 2344567778876532221 123345556667777789998766544455566666
Q ss_pred HhcCccccccCCccEEEecCCC-hhhHHHhh
Q 022147 186 LLEREDWNDAIKVPLGVVPAGT-GNGMIKSL 215 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~GT-gN~~A~sL 215 (302)
+.+.. ...++..+..+. ...+...+
T Consensus 223 ~~~~G-----~~~~~~~~~~~~~~~~~~~~~ 248 (357)
T cd06337 223 AAQAG-----FKPKIVTIAKALLFPEDVEAL 248 (357)
T ss_pred HHHCC-----CCCCeEEEeccccCHHHHHHh
Confidence 65542 345554443332 33455544
No 368
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=41.34 E-value=69 Score=25.90 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCc-----hHHHHHHHHhc
Q 022147 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDG-----ILVEVVNGLLE 188 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDG-----Tl~evvngL~~ 188 (302)
..++.+|++.|.++.... .+.++...+..+++. +++|.|++.||=| -..+++..+.+
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~-~~~DlvittGG~g~g~~D~t~~ai~~~g~ 85 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVVPDDADSIRAALIEAS-READLVLTTGGTGVGRRDVTPEALAELGE 85 (133)
T ss_pred HHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHH-hcCCEEEECCCCCCCCCcchHHHHHHhcC
Confidence 467788898998765432 233333334444433 3599999999976 25566666543
No 369
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=41.24 E-value=1.6e+02 Score=27.17 Aligned_cols=78 Identities=18% Similarity=0.066 Sum_probs=44.8
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC----CcchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~----~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
..+++.+|+.. ..-+.. .. +.++..+++.|..+++.... ...+...++.++...++|.|++++..+-.-.++
T Consensus 137 ~~~~v~~l~~~-~~~g~~--~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~~~d~ii~~~~~~~~~~~~ 212 (346)
T cd06330 137 KAKTWATINPD-YAYGQD--AW-ADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSLWGGDLVTFV 212 (346)
T ss_pred CccEEEEECCc-hHHHHH--HH-HHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhcCCCEEEEecccccHHHHH
Confidence 35677776532 222222 23 46778888885444433221 234455566677667899988876544455677
Q ss_pred HHHhcC
Q 022147 184 NGLLER 189 (302)
Q Consensus 184 ngL~~~ 189 (302)
..+.+.
T Consensus 213 ~~~~~~ 218 (346)
T cd06330 213 RQANAR 218 (346)
T ss_pred HHHHhc
Confidence 776654
No 370
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=41.02 E-value=62 Score=29.68 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=27.6
Q ss_pred CcEEEEEEcCCCCCCch-----hhhHHHHHHHHHHhcCCcEE-EEEeCC
Q 022147 109 PKRLYIFVNPFGGKKIA-----SKIFLDDVKPLLEDANIQFT-VQETTQ 151 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a-----~~~~~~~v~~~L~~ag~~~~-v~~T~~ 151 (302)
...+.+|+||.+|.|.+ ..-|...+..+-+..|+++- .+.|.+
T Consensus 30 ~~~f~vIiNP~sGPG~~~~~~pd~~Y~~~i~~L~~~~nv~vlGYV~T~Y 78 (253)
T PF12138_consen 30 SVPFTVIINPNSGPGSAPDPWPDANYAAAIPRLNSYANVRVLGYVHTSY 78 (253)
T ss_pred CCcEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 34699999999999954 34565555544377777642 334444
No 371
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=40.93 E-value=2.4e+02 Score=24.44 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGG 175 (302)
+.++..+++.|.++.+..+....+ ..++.+.+...+.|+|++.+-
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 19 DGIEKAALKHGYKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSR 64 (260)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 345555555565555444432221 113334444445666666554
No 372
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=40.92 E-value=33 Score=25.06 Aligned_cols=24 Identities=25% Similarity=0.668 Sum_probs=21.6
Q ss_pred eeEEecCCChHHHHHHHHHHHhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l 103 (302)
..+.|.++++++...|.++|+..+
T Consensus 80 ~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 80 KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 688999999999999999998765
No 373
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=40.86 E-value=1.4e+02 Score=29.38 Aligned_cols=51 Identities=12% Similarity=0.032 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhhcc-CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE
Q 022147 91 SKRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~-~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~ 147 (302)
..+.+.+.|.+.++.. -+.+.+-|+++|..|.+. . .+..+|+..|+++..+
T Consensus 147 ~~~~Y~~~l~~~i~~~~i~~~~lkIvvd~~~G~~~--~----~~~~ll~~lG~~v~~i 198 (441)
T cd05805 147 FVEYYIRGLLRALDTSGLKKSGLKVVIDYAYGVAG--I----VLPGLLSRLGCDVVIL 198 (441)
T ss_pred HHHHHHHHHHHHhCHHHHhhcCCeEEEECCCchHH--H----HHHHHHHHcCCEEEEE
Confidence 3455777776655321 123478899999776543 2 3457788888876543
No 374
>PRK11249 katE hydroperoxidase II; Provisional
Probab=40.83 E-value=79 Score=33.71 Aligned_cols=86 Identities=9% Similarity=0.106 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchH-----HHH-----HHHhhcCCCceEEEEcCCch
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA-----KEI-----VKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a-----~el-----~~~~~~~~~d~IVvvGGDGT 178 (302)
.+++.||+.+ | .....+ ..+...|+.+|+.+.++-.+. +.. ..+ ........||.|++.||...
T Consensus 597 gRKIaILVaD--G-~d~~ev--~~~~daL~~AGa~V~VVSp~~-G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~ 670 (752)
T PRK11249 597 GRKVAILLND--G-VDAADL--LAILKALKAKGVHAKLLYPRM-GEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKAN 670 (752)
T ss_pred ccEEEEEecC--C-CCHHHH--HHHHHHHHHCCCEEEEEECCC-CeEECCCCCEEecceeeccCCccCCCEEEECCCchh
Confidence 3678888876 3 233322 367888999999888765432 110 011 11111225999999999543
Q ss_pred ---------HHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 179 ---------LVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 179 ---------l~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
+.+.|+..+.+ ..+|+.+-.|+
T Consensus 671 ~~~L~~d~~al~fL~eaykH-------gK~IAAiCaG~ 701 (752)
T PRK11249 671 IADLADNGDARYYLLEAYKH-------LKPIALAGDAR 701 (752)
T ss_pred HHHHhhCHHHHHHHHHHHHc-------CCEEEEeCccH
Confidence 22233333333 56788777665
No 375
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=40.83 E-value=1.1e+02 Score=25.34 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=38.0
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchH--------------HHHHHHhhcCCCceEEEEcCCc
Q 022147 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA--------------KEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a--------------~el~~~~~~~~~d~IVvvGGDG 177 (302)
..+.|+++|-||.- ..-.+...|...|.++-++..+..+.. .++.+++...+||.||+=.+=+
T Consensus 2 i~v~s~kgG~GKTt--~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~ 78 (169)
T cd02037 2 IAVMSGKGGVGKST--VAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPG 78 (169)
T ss_pred EEEecCCCcCChhH--HHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCC
Confidence 56788998888874 234677778888877766655543321 1122222225788877765544
No 376
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=40.75 E-value=56 Score=36.84 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=37.1
Q ss_pred HHHHhhcCCCceEEEEcCCchHHHHHHHHhcCcccc----ccCCccEEEecCCChhhHHH
Q 022147 158 IVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWN----DAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 158 l~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~----~~~~~plgiIP~GTgN~~A~ 213 (302)
+.+.+...+.|++|++|||||+..+. .|.+.-... ....+|+..||.=--||+..
T Consensus 792 v~~~L~~~~Id~LVvIGGDgS~t~A~-~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~ 850 (1328)
T PTZ00468 792 LSQLLSFFNMRAIAIVGNSEAATFGA-SLSEQLICMSLNGMKSEIPVVFVPVCLENSISH 850 (1328)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHH-HHHHHHhhhccccccCCCcEEEeCccccCCCCC
Confidence 44455556889999999999987543 333220000 11368999999988899876
No 377
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=40.53 E-value=39 Score=27.23 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=22.4
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~ 105 (302)
.++.|...+.++.+.|+++|......
T Consensus 88 ~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 88 REFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999877543
No 378
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=40.44 E-value=63 Score=29.16 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=35.6
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhH
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGM 211 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~ 211 (302)
...+.++.+...+.|.|++.|-||.=.|-+..++.+=. ...+|+.+.|. +.+.+
T Consensus 15 ~~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik---~~~lPvilfp~-~~~~i 68 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALR---RYGLPIILFPS-NPTNV 68 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHh---ccCCCEEEeCC-Ccccc
Confidence 34567777777889999999999885555444433210 12599999994 33433
No 379
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=40.41 E-value=35 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=21.2
Q ss_pred eeEEecCCChHHHHHHHHHHHhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l 103 (302)
..+.|.+.++++...|.++|+..+
T Consensus 78 ~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 588899999999999999998764
No 380
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.36 E-value=3.1e+02 Score=25.58 Aligned_cols=97 Identities=19% Similarity=0.145 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhc-CC
Q 022147 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDL-SK 166 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~-~~ 166 (302)
.+++-.+.+++.+...+...++.+|.= |...+...|.+......++.|++++.+.-. +.++..+..+++.. ..
T Consensus 8 ~a~~i~~~~~~~v~~lg~~P~Laii~v---g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 84 (279)
T PRK14178 8 VSEKRLELLKEEIIESGLYPRLATVIV---GDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPD 84 (279)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 344445555555544444445554432 445566678788888999999998766432 22334445555532 34
Q ss_pred CceEEEE---cCCchHHHHHHHHhcCc
Q 022147 167 YDGIVCV---SGDGILVEVVNGLLERE 190 (302)
Q Consensus 167 ~d~IVvv---GGDGTl~evvngL~~~~ 190 (302)
.|+|++- -..=.-+++++.+.-..
T Consensus 85 V~GIlvqlPLp~~i~~~~v~~~I~p~K 111 (279)
T PRK14178 85 INGILVQLPLPKGVDTERVIAAILPEK 111 (279)
T ss_pred CCeEEEcCCCCCCCCHHHHHhccCccc
Confidence 5666653 23334445666554433
No 381
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=40.32 E-value=1.6e+02 Score=26.38 Aligned_cols=78 Identities=9% Similarity=0.135 Sum_probs=42.9
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-------hHHHHHHHhhc-CCCceEEEEcCCchHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-------HAKEIVKVLDL-SKYDGIVCVSGDGILV 180 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-------~a~el~~~~~~-~~~d~IVvvGGDGTl~ 180 (302)
.+++.+|+--. ....-.|.+++..+....++.+.+..+.... ...+...+... ...+.+.+||-++.+.
T Consensus 127 ~~~i~Li~~~r---~~~~~~~~~~L~~l~~~~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~~~~~~~~vyicGp~~mv~ 203 (253)
T cd06221 127 YGKVTLLYGAR---TPEDLLFKEELKEWAKRSDVEVILTVDRAEEGWTGNVGLVTDLLPELTLDPDNTVAIVCGPPIMMR 203 (253)
T ss_pred CCcEEEEEecC---ChHHcchHHHHHHHHhcCCeEEEEEeCCCCCCccCCccccchhHHhcCCCcCCcEEEEECCHHHHH
Confidence 35566555321 2222345567776655444555555443221 11222222211 1346799999999999
Q ss_pred HHHHHHhcC
Q 022147 181 EVVNGLLER 189 (302)
Q Consensus 181 evvngL~~~ 189 (302)
.+.+.|...
T Consensus 204 ~~~~~L~~~ 212 (253)
T cd06221 204 FVAKELLKL 212 (253)
T ss_pred HHHHHHHHc
Confidence 999999776
No 382
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=40.29 E-value=3e+02 Score=25.29 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=46.6
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE--EeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~--~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+++.++.+..+- ++. . .+.++..|++.|+++... ......+....+.++...++|.|++++-..-...++..
T Consensus 131 g~~~v~i~~~~~~~-g~~--~-~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~ 206 (333)
T cd06358 131 GARRWYLIGNDYVW-PRG--S-LAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLSTLVGQDAVAFNRQ 206 (333)
T ss_pred CCCeEEEEeccchh-hHH--H-HHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHcCCCEEEEeCCCCchHHHHHH
Confidence 45788887766542 222 2 256777888889876422 12223344455666666789988876655444466777
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 207 ~~~~ 210 (333)
T cd06358 207 FAAA 210 (333)
T ss_pred HHHc
Confidence 7654
No 383
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.15 E-value=2.7e+02 Score=26.04 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=56.5
Q ss_pred CCchhhhHHHHHHHHHHhcCCcEEEEEe---CCcchHHHHHHHhhc-CCCceEEEE---cCCchHHHHHHHHhcCccccc
Q 022147 122 KKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDL-SKYDGIVCV---SGDGILVEVVNGLLEREDWND 194 (302)
Q Consensus 122 ~~~a~~~~~~~v~~~L~~ag~~~~v~~T---~~~~~a~el~~~~~~-~~~d~IVvv---GGDGTl~evvngL~~~~~~~~ 194 (302)
...+...|.+.....+++.|++++.+.- ...++..+..+++.. ...++|++- -..-.-+++++.+.-..|-+-
T Consensus 41 ~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDG 120 (282)
T PRK14180 41 NDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDG 120 (282)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccc
Confidence 4456667888888899999999987733 334455566666643 345677663 345556667777655444322
Q ss_pred cCCc---------cEEEecCCChhhHHHhhh
Q 022147 195 AIKV---------PLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 195 ~~~~---------plgiIP~GTgN~~A~sL~ 216 (302)
.... --+++|| |..+...-|-
T Consensus 121 l~~~n~g~l~~g~~~~~~Pc-Tp~aii~lL~ 150 (282)
T PRK14180 121 FHPTNVGRLQLRDKKCLESC-TPKGIMTMLR 150 (282)
T ss_pred cChhhHHHHhcCCCCCcCCC-CHHHHHHHHH
Confidence 1111 1236777 7777666554
No 384
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=39.94 E-value=39 Score=27.01 Aligned_cols=26 Identities=8% Similarity=0.316 Sum_probs=22.5
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhhh
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
++.+.|...++++.+.|+++|+..+.
T Consensus 89 ~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 89 HSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred ceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 36777999999999999999988764
No 385
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=39.64 E-value=1.6e+02 Score=29.12 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV 146 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v 146 (302)
...+.+.|.+.++..-+.+++-|++.+..|. +.. .+.++|+..|+++..
T Consensus 158 ~~~Y~~~l~~~id~~i~~~~~kVvvD~~~Ga--~~~----~~~~il~~lg~~v~~ 206 (450)
T PRK14314 158 PGRYIVFLKATFPKGLTLKGLKIVLDCANGA--AYK----VAPAVFEELGAEVIC 206 (450)
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEECCCch--HHH----HHHHHHHHcCCeEEE
Confidence 4557777777765211234688889986664 332 345678887877543
No 386
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=39.30 E-value=56 Score=27.05 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=26.7
Q ss_pred eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 149 TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 149 T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
..+..+..++++.. |.||+=||=||+.|++. ...|+.+||.-.
T Consensus 60 ~~~~~~m~~~m~~a-----DlvIs~aG~~Ti~E~l~-----------~g~P~I~ip~~~ 102 (167)
T PF04101_consen 60 FGFVDNMAELMAAA-----DLVISHAGAGTIAEALA-----------LGKPAIVIPLPG 102 (167)
T ss_dssp ECSSSSHHHHHHHH-----SEEEECS-CHHHHHHHH-----------CT--EEEE--TT
T ss_pred EechhhHHHHHHHc-----CEEEeCCCccHHHHHHH-----------cCCCeeccCCCC
Confidence 34444455665553 78888899999999876 267888888866
No 387
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=39.29 E-value=1.7e+02 Score=25.95 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=31.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHH-hcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCc
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLE-DANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~-~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDG 177 (302)
+|+.|+.+| |.. .. ..+...|+ .+|++...+..+. ...+.+|.||+.||-+
T Consensus 1 ~~v~Vl~~~--G~n-~~----~d~~~a~~~~~G~~~~~v~~~~----------~~l~~~D~lvipGG~~ 52 (219)
T PRK03619 1 MKVAVIVFP--GSN-CD----RDMARALRDLLGAEPEYVWHKE----------TDLDGVDAVVLPGGFS 52 (219)
T ss_pred CEEEEEecC--CcC-hH----HHHHHHHHhcCCCeEEEEecCc----------CCCCCCCEEEECCCCc
Confidence 478999999 432 21 23455676 7887765443221 1235799999999853
No 388
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=39.29 E-value=32 Score=25.97 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred eeEEecCCChHHHHHHHHHHHh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRD 101 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~ 101 (302)
+.+.|...++++.+.|+++|+.
T Consensus 74 ~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 74 KSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHHh
Confidence 6788999999999999999865
No 389
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=38.81 E-value=1.6e+02 Score=29.03 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~ 147 (302)
...|.+.|.+.++..-+.+.+-|++++..|.+. ..+.++|+..|+++...
T Consensus 152 ~~~Y~~~l~~~id~~i~~~~~kVvvD~~~G~~~------~~~~~ll~~lG~~v~~~ 201 (443)
T PRK10887 152 AGRYIEFCKSTFPNELSLRGLKIVVDCANGATY------HIAPNVFRELGAEVIAI 201 (443)
T ss_pred HHHHHHHHHHhcCcccccCCCEEEEECCCchHH------HHHHHHHHHhCCeEEEE
Confidence 455777777766421133578899998766543 23567788878876543
No 390
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.57 E-value=2.7e+02 Score=24.29 Aligned_cols=46 Identities=9% Similarity=0.185 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGD 176 (302)
+.+...+++.|..+.+..+.+..+ -.++.+.+...+.|+||+.+-|
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~ 65 (263)
T cd06280 19 RAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPTR 65 (263)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 466666777776665554443221 1133445555567777777654
No 391
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=38.46 E-value=1.3e+02 Score=27.95 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHHHhc-CCcEEEEEeCC--cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 131 DDVKPLLEDA-NIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 131 ~~v~~~L~~a-g~~~~v~~T~~--~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
+-++++-++. ++++...+... ..+..+..+++...++|.||+.|.. ..+.+..+..
T Consensus 23 ~G~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~--~~~~~~~vA~ 81 (306)
T PF02608_consen 23 EGLKRAEKELDGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFE--YSDALQEVAK 81 (306)
T ss_dssp HHHHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGG--GHHHHHHHHT
T ss_pred HHHHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHH--HHHHHHHHHH
Confidence 3555555666 66666666655 5666677777766778877765533 2344444443
No 392
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=38.28 E-value=69 Score=29.51 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=35.0
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG 175 (302)
+|+.|++-|-+. .- ......|+.+|+++.++....... . ....++||.||+.||
T Consensus 4 ~kvaVl~~pG~n--~d-----~e~~~Al~~aG~~v~~v~~~~~~~---~--~~~l~~~DgLvipGG 57 (261)
T PRK01175 4 IRVAVLRMEGTN--CE-----DETVKAFRRLGVEPEYVHINDLAA---E--RKSVSDYDCLVIPGG 57 (261)
T ss_pred CEEEEEeCCCCC--CH-----HHHHHHHHHCCCcEEEEeeccccc---c--ccchhhCCEEEECCC
Confidence 589999988443 21 134577888998887765543211 1 112357999999999
No 393
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=38.27 E-value=3.2e+02 Score=25.05 Aligned_cols=77 Identities=9% Similarity=-0.006 Sum_probs=46.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.+|+.++. +...-++. .. +.++..+++.|.++.... .....+...++.++...++|.|++.+..+-.-.++..+
T Consensus 135 ~~~v~~i~-~~~~~g~~--~~-~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~ 210 (334)
T cd06327 135 GKKWFFLT-ADYAFGHS--LE-RDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLANAGADTVNAIKQA 210 (334)
T ss_pred CCeEEEEe-cchHHhHH--HH-HHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCCCCEEEEeccchhHHHHHHHH
Confidence 46776555 43333332 23 577888988887653221 12233455666677667899888887666555666666
Q ss_pred hcC
Q 022147 187 LER 189 (302)
Q Consensus 187 ~~~ 189 (302)
.+.
T Consensus 211 ~~~ 213 (334)
T cd06327 211 AEF 213 (334)
T ss_pred HHh
Confidence 554
No 394
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=38.24 E-value=2.7e+02 Score=24.21 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCc
Q 022147 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDG 177 (302)
+.++..+++.|..+.+..+... ..-.++.+.+...+.|+||+.+.|.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~ 66 (265)
T cd06291 19 RAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTHNL 66 (265)
T ss_pred HHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecCCc
Confidence 4555556666655544433321 1112333344444566666666553
No 395
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=38.12 E-value=1.3e+02 Score=28.28 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=37.8
Q ss_pred hhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc
Q 022147 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG 174 (302)
+......+++.||++..+|++.-. +. +.++.+++++|.++-++......-+ +-......|+.|.++
T Consensus 203 i~ka~~a~~~GIiv~tl~~q~~~~-~~-~~l~~~l~~~gkk~y~~~~~~i~~~----kL~nf~eid~fV~~a 268 (307)
T PF01866_consen 203 IEKAKDAKTFGIIVGTLGGQGYLE-LI-KRLKKLLKKAGKKSYTLSVGEINPA----KLANFPEIDAFVQIA 268 (307)
T ss_dssp HHHHTT--EEEEEEE-STTT--HH-HH-HHHHHHHHHTT-EEEEEEESS--GG----GGTTS---SEEEE-S
T ss_pred HHHHhcCCEEEEEEecCCCCCCHH-HH-HHHHHHHHHcCCEEEEEEECCCCHH----HHhcCcccCEEEEec
Confidence 444456689999999999988765 44 6999999999998777666655432 111123467777665
No 396
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=38.05 E-value=35 Score=25.10 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=19.6
Q ss_pred eeEEecCCChHHHHHHHHHHHh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRD 101 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~ 101 (302)
+.+.|...++++.+.|+++|+.
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhc
Confidence 6788999999999999999864
No 397
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=37.97 E-value=88 Score=22.34 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHH------HHHHhcCccccccCCccEEEecC
Q 022147 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV------VNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev------vngL~~~~~~~~~~~~plgiIP~ 205 (302)
.....|..+++++++......... . .....++|.+++.||.+..... +.-+.+.. ....++..+..
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~~~-~---~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~----~~~~~i~~~c~ 87 (115)
T cd01653 16 SPLDALREAGAEVDVVSPDGGPVE-S---DVDLDDYDGLILPGGPGTPDDLARDEALLALLREAA----AAGKPILGICL 87 (115)
T ss_pred HHHHHHHHCCCeEEEEcCCCCcee-c---cCChhccCEEEECCCCCchhhhccCHHHHHHHHHHH----HcCCEEEEECc
Confidence 456677888877776554432211 1 1223579999999999887654 22222221 12567777777
Q ss_pred CCh
Q 022147 206 GTG 208 (302)
Q Consensus 206 GTg 208 (302)
|+.
T Consensus 88 g~~ 90 (115)
T cd01653 88 GAQ 90 (115)
T ss_pred hhH
Confidence 763
No 398
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=37.87 E-value=1.9e+02 Score=22.26 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEE--EEeCCcchHHHHHHHhhcCCCc
Q 022147 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYD 168 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v--~~T~~~~~a~el~~~~~~~~~d 168 (302)
.+..+.+.|++ +.+++.++-|-.+ +.. +++...|+..|+.++. +.|. ..-+.+..++. ..-.
T Consensus 18 ga~e~l~~L~~------~g~~~~~lTNns~---~s~----~~~~~~L~~~Gi~~~~~~i~ts-~~~~~~~l~~~--~~~~ 81 (101)
T PF13344_consen 18 GAVEALDALRE------RGKPVVFLTNNSS---RSR----EEYAKKLKKLGIPVDEDEIITS-GMAAAEYLKEH--KGGK 81 (101)
T ss_dssp THHHHHHHHHH------TTSEEEEEES-SS---S-H----HHHHHHHHHTTTT--GGGEEEH-HHHHHHHHHHH--TTSS
T ss_pred CHHHHHHHHHH------cCCCEEEEeCCCC---CCH----HHHHHHHHhcCcCCCcCEEECh-HHHHHHHHHhc--CCCC
Confidence 34556666554 3478999999532 222 2445567888887532 1121 11222333331 3567
Q ss_pred eEEEEcCCchHHHH
Q 022147 169 GIVCVSGDGILVEV 182 (302)
Q Consensus 169 ~IVvvGGDGTl~ev 182 (302)
.|.++|.||...++
T Consensus 82 ~v~vlG~~~l~~~l 95 (101)
T PF13344_consen 82 KVYVLGSDGLREEL 95 (101)
T ss_dssp EEEEES-HHHHHHH
T ss_pred EEEEEcCHHHHHHH
Confidence 89999999876655
No 399
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=37.84 E-value=1.7e+02 Score=22.04 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=39.4
Q ss_pred HHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhc-CCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 99 l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~a-g~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
+++.+.....|-.+.+|+.|..+.-.... ..+..+-... ++++.++.. .+..+++++......-.+++
T Consensus 3 ~~~~~~~l~~pv~i~~F~~~~C~~C~~~~---~~~~~l~~~~~~i~~~~vd~---~~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 3 LLEQIRRLNGPINFETYVSLSCHNCPDVV---QALNLMAVLNPNIEHEMIDG---ALFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred HHHHHHhcCCCEEEEEEECCCCCCcHHHH---HHHHHHHHHCCCceEEEEEh---HhCHHHHHHcCCccCCEEEE
Confidence 34556667889999999999887765432 2233333332 455555443 23345666665444445554
No 400
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=37.54 E-value=2.3e+02 Score=25.52 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCcEEEEEe-C--CcchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcC
Q 022147 131 DDVKPLLEDANIQFTVQET-T--QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLER 189 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T-~--~~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~ 189 (302)
+.++..+++.|....++.. . ....-.+..+.+...++|+||+++-|.+ +.++++.+.+.
T Consensus 18 ~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~~~~~ 80 (302)
T TIGR02637 18 KGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISANDPDALVPALKKAMKR 80 (302)
T ss_pred HHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC
Confidence 4566777777742222221 1 2222334556665678999999987743 34455555443
No 401
>PRK08250 glutamine amidotransferase; Provisional
Probab=37.48 E-value=1.1e+02 Score=27.42 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=49.5
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHH--------
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE-------- 181 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e-------- 181 (302)
+|++||.|-.- ... ..+.+.++.+|+++++..... ++. +- .+..+||+||+.||=.+.++
T Consensus 1 m~i~vi~h~~~---e~~----g~~~~~~~~~g~~~~~~~~~~-g~~--~p--~~~~~~d~vii~GGp~~~~~~~~~~p~~ 68 (235)
T PRK08250 1 MRVHFIIHESF---EAP----GAYLKWAENRGYDISYSRVYA-GEA--LP--ENADGFDLLIVMGGPQSPRTTREECPYF 68 (235)
T ss_pred CeEEEEecCCC---CCc----hHHHHHHHHCCCeEEEEEccC-CCC--CC--CCccccCEEEECCCCCChhhcccccccc
Confidence 46777765321 111 235677788998888765432 221 10 02357999999999655432
Q ss_pred -------HHHHHhcCccccccCCccEEEecCCChhhHHHhhhhc
Q 022147 182 -------VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDL 218 (302)
Q Consensus 182 -------vvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~ 218 (302)
.+..++.. +.|+.-|=.|- =.+|+.+++.
T Consensus 69 ~~~~~~~~i~~~~~~-------~~PvlGIC~G~-Qlla~alGg~ 104 (235)
T PRK08250 69 DSKAEQRLINQAIKA-------GKAVIGVCLGA-QLIGEALGAK 104 (235)
T ss_pred chHHHHHHHHHHHHc-------CCCEEEEChhH-HHHHHHhCce
Confidence 22233222 56766665553 5677777543
No 402
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=37.47 E-value=1.1e+02 Score=26.24 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHH
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ 180 (302)
..+...|+..|+++++...+.. ..++ ...++|+||+.||.+...
T Consensus 12 ~~l~~~l~~~g~~~~~~~~~~~--~~~~----~~~~~~glii~Gg~~~~~ 55 (188)
T TIGR00888 12 QLIARRLRELGVYSELVPNTTP--LEEI----REKNPKGIILSGGPSSVY 55 (188)
T ss_pred HHHHHHHHHcCCEEEEEeCCCC--HHHH----hhcCCCEEEECCCCCCcC
Confidence 4677888989988877654432 1122 212467999999998754
No 403
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.39 E-value=3.5e+02 Score=25.33 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=45.8
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhc-CCCceEEEE---cCCchHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDL-SKYDGIVCV---SGDGILV 180 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~-~~~d~IVvv---GGDGTl~ 180 (302)
+..++.+|.= |...+...|.+.....+++.|++++++.-. +.++..+..+++.. ...|+|++- -..=.-.
T Consensus 30 ~~P~Laii~v---g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~ 106 (286)
T PRK14184 30 RAPGLAVILV---GEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQ 106 (286)
T ss_pred CCCEEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHH
Confidence 3335544432 445566678778888999999999876532 23444555666543 345666653 1233344
Q ss_pred HHHHHHhcCc
Q 022147 181 EVVNGLLERE 190 (302)
Q Consensus 181 evvngL~~~~ 190 (302)
++++.+.-..
T Consensus 107 ~i~~~I~p~K 116 (286)
T PRK14184 107 RCLELIDPAK 116 (286)
T ss_pred HHHhccCccc
Confidence 5666554443
No 404
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=37.20 E-value=1.2e+02 Score=20.43 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHh-hcCCCceEEEEcC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVL-DLSKYDGIVCVSG 175 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~-~~~~~d~IVvvGG 175 (302)
..++.+|+..|++++.+.-+....+.+..++. .....-.|++ ||
T Consensus 13 ~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i-~g 57 (60)
T PF00462_consen 13 KKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI-DG 57 (60)
T ss_dssp HHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE-TT
T ss_pred HHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE-CC
Confidence 57788999999999888777665555544444 2233334443 44
No 405
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=37.15 E-value=1.3e+02 Score=28.49 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCch-----HHHHHHHHhc
Q 022147 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLLE 188 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGT-----l~evvngL~~ 188 (302)
..+..+|+..|+++.... .+..+...+..+++...++|.|++.||=|. ..|++..+.+
T Consensus 178 ~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~~D~tpeAl~~lg~ 242 (312)
T PRK03604 178 KLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGPRDVTPEALAPLLE 242 (312)
T ss_pred HHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCCCccHHHHHHHhcC
Confidence 578899999998765433 233333344444442357999999999653 4555555543
No 406
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=37.08 E-value=1.1e+02 Score=28.23 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=44.5
Q ss_pred HHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC-cEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCc
Q 022147 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 99 l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~-~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDG 177 (302)
|++.....+.++ ..+.+-|.++.-.+ .+-.....+++..|+ ++.+..+...++|..--......+.++|...|||=
T Consensus 41 L~~f~~r~g~~~-A~i~I~paas~ep~--~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ 117 (293)
T COG4242 41 LREFGGRAGGEK-AYIVIIPAASREPR--AIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQ 117 (293)
T ss_pred HHHhccCCCCCc-eEEEEEecCccChh--hhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcc
Confidence 334333333444 47777787776553 222344457887776 46666677766664322222234689999999994
No 407
>PRK00536 speE spermidine synthase; Provisional
Probab=37.05 E-value=20 Score=33.10 Aligned_cols=18 Identities=6% Similarity=-0.001 Sum_probs=12.9
Q ss_pred CceEEEEcCCc-hHHHHHH
Q 022147 167 YDGIVCVSGDG-ILVEVVN 184 (302)
Q Consensus 167 ~d~IVvvGGDG-Tl~evvn 184 (302)
-.++|+.|||| |+.||+.
T Consensus 74 k~VLIiGGGDGg~~REvLk 92 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLFK 92 (262)
T ss_pred CeEEEEcCCchHHHHHHHC
Confidence 45888999995 5666554
No 408
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=37.00 E-value=2e+02 Score=24.95 Aligned_cols=76 Identities=21% Similarity=0.184 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc----chHHH-----------------HHHHhhcCCCc
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----LHAKE-----------------IVKVLDLSKYD 168 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~----~~a~e-----------------l~~~~~~~~~d 168 (302)
|-+.|..-|++ .+...... +.+..-++++|.+++++..... -.+.. +.+.+ ..+|
T Consensus 2 ki~~I~gs~r~-~G~t~~l~-~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l--~~aD 77 (207)
T COG0655 2 KILGINGSPRS-NGNTAKLA-EAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKL--LEAD 77 (207)
T ss_pred eeeEEEecCCC-CCcHHHHH-HHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHH--HHCC
Confidence 44567778988 67766555 6888899999999888776643 12212 22222 2467
Q ss_pred eEEEEcC--CchHHHHHHHHhcC
Q 022147 169 GIVCVSG--DGILVEVVNGLLER 189 (302)
Q Consensus 169 ~IVvvGG--DGTl~evvngL~~~ 189 (302)
+||..+= -|.++..+..+++|
T Consensus 78 ~iI~gsPvy~g~vsa~~K~fiDR 100 (207)
T COG0655 78 GIIFGSPVYFGNVSAQMKAFIDR 100 (207)
T ss_pred EEEEeCCeecCCchHHHHHHHhh
Confidence 7776654 67788888888777
No 409
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=36.92 E-value=1.4e+02 Score=29.46 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhhcc-C--CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE
Q 022147 92 KRLWCEKLRDFIDSF-G--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT 145 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~-~--r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~ 145 (302)
.+.|++.|.+.+... . +.+.+-|+++|..|.+.. .+.++|+..|+++.
T Consensus 151 ~~~Y~~~l~~~~~~~~~~~~~~~lkVvvd~~~G~~~~------~~~~ll~~lg~~v~ 201 (445)
T cd05803 151 IAEHIDKVLALVDVDVIKIRERNFKVAVDSVNGAGGL------LIPRLLEKLGCEVI 201 (445)
T ss_pred HHHHHHHHHhhcccchhhhccCCCEEEEECCCCcHHH------HHHHHHHHcCCEEE
Confidence 455777777665311 1 235789999997775432 34678888888764
No 410
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=36.86 E-value=2.3e+02 Score=25.37 Aligned_cols=67 Identities=12% Similarity=0.234 Sum_probs=37.6
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCC
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGD 176 (302)
+.+.+.+++ |.....--.. +.+.+...+.+.|+.+.+..+....+ -.++.+.+...++|+|++.+-+
T Consensus 34 ~~~~ig~v~-~~~~~~~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~ 101 (309)
T PRK11041 34 ESRTILVIV-PDICDPFFSE-IIRGIEVTAAEHGYLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGSR 101 (309)
T ss_pred CCcEEEEEe-CCCcCccHHH-HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 345566665 3322222222 33567777777787776655543221 2345555555678988888764
No 411
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=36.77 E-value=1.5e+02 Score=24.78 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEe------CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEE
Q 022147 129 FLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T------~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgi 202 (302)
+.+.++..|+..|+++.-+-+ .++.-+..+++.+ ... ....||
T Consensus 13 lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V------------------------~~~-------~~~~GI 61 (143)
T TIGR01120 13 LKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAV------------------------AGG-------EVDGGI 61 (143)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHH------------------------HCC-------CCceEE
Confidence 346888999999987654333 2333333333333 222 456788
Q ss_pred ecCCChhhHHHhhh
Q 022147 203 VPAGTGNGMIKSLL 216 (302)
Q Consensus 203 IP~GTgN~~A~sL~ 216 (302)
+=||||-+++-+.+
T Consensus 62 liCGtGiG~siaAN 75 (143)
T TIGR01120 62 LICGTGIGMSIAAN 75 (143)
T ss_pred EEcCCcHHHHHHHh
Confidence 88888888877765
No 412
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.72 E-value=3.6e+02 Score=25.28 Aligned_cols=121 Identities=12% Similarity=0.160 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhhhccCCCcEEE-EEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhc-C
Q 022147 91 SKRLWCEKLRDFIDSFGRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDL-S 165 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~~r~~r~~-vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~-~ 165 (302)
.++...+.+++.+...++..++. |.++ ...+...|.+.....+++.|+.++.+.-. +.++..+..+++.. .
T Consensus 8 iA~~i~~~~k~~v~~l~~~P~LaiI~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~ 83 (287)
T PRK14181 8 AAEHILATIKENISASSTAPGLAVVLIG----NDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDP 83 (287)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34445555555555444333444 4444 45566678788888999999998876653 23344555566543 3
Q ss_pred CCceEEEE---cCCchHHHHHHHHhcCccccccC---------CccEEEecCCChhhHHHhhh
Q 022147 166 KYDGIVCV---SGDGILVEVVNGLLEREDWNDAI---------KVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 166 ~~d~IVvv---GGDGTl~evvngL~~~~~~~~~~---------~~plgiIP~GTgN~~A~sL~ 216 (302)
..++|++- -+.=.-+++++.+.-..|-+-.. .-.-+++|| |..+.-.-|.
T Consensus 84 ~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~~~~~~Pc-Tp~avi~lL~ 145 (287)
T PRK14181 84 NIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGETDGFIPC-TPAGIIELLK 145 (287)
T ss_pred CCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHhcCCCCCCCCC-CHHHHHHHHH
Confidence 45666653 23334445666664443322111 001136777 7777766654
No 413
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=36.66 E-value=91 Score=28.39 Aligned_cols=59 Identities=8% Similarity=0.020 Sum_probs=37.0
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG 174 (302)
||++++.+..+..|... .. ..+...|.+.|+++.+...+.. .+.+.+...++|.|.+-.
T Consensus 1 MkIl~~~~~~~~gG~~~-~~-~~l~~~l~~~G~~v~v~~~~~~----~~~~~~~~~~~diih~~~ 59 (365)
T cd03825 1 MKVLHLNTSDISGGAAR-AA-YRLHRALQAAGVDSTMLVQEKK----ALISKIEIINADIVHLHW 59 (365)
T ss_pred CeEEEEecCCCCCcHHH-HH-HHHHHHHHhcCCceeEEEeecc----hhhhChhcccCCEEEEEc
Confidence 46677654433333333 23 5778889999999988876654 344455556789887643
No 414
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=36.60 E-value=39 Score=24.65 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.6
Q ss_pred eeEEecCCChHHHHHHHHHHHh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRD 101 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~ 101 (302)
+.+.|...++++...|+++|+.
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHh
Confidence 6788999999999999999865
No 415
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=36.59 E-value=1.6e+02 Score=23.19 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=45.1
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCc-----hHHHHHH
Q 022147 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDG-----ILVEVVN 184 (302)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDG-----Tl~evvn 184 (302)
+||+-.. .|..+++. +.+...+...|+++++....... . .++ ..+|.||++. ++| .+.++++
T Consensus 2 ~Iiy~S~--tGnT~~~A-~~i~~~~~~~g~~v~~~~~~~~~-~----~~l--~~~d~iilgspty~~g~~p~~~~~~f~~ 71 (140)
T TIGR01753 2 LIVYASM--TGNTEEMA-NIIAEGLKEAGAEVDLLEVADAD-A----EDL--LSYDAVLLGCSTWGDEDLEQDDFEPFFE 71 (140)
T ss_pred EEEEECC--CcHHHHHH-HHHHHHHHhcCCeEEEEEcccCC-H----HHH--hcCCEEEEEcCCCCCCCCCcchHHHHHH
Confidence 4556443 45555554 67888888888888776654322 1 122 3588888775 444 4456666
Q ss_pred HHhcCccccccCCccEEEecC
Q 022147 185 GLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~ 205 (302)
.|.... ....+++++-.
T Consensus 72 ~l~~~~----~~gk~~~vfgt 88 (140)
T TIGR01753 72 ELEDID----LGGKKVALFGS 88 (140)
T ss_pred HhhhCC----CCCCEEEEEec
Confidence 664421 12455665543
No 416
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=36.52 E-value=1.8e+02 Score=28.73 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~ 147 (302)
...|.+.|.+.++ .+.+++-|++.+..|.+.. .+.++|+..|+++...
T Consensus 158 ~~~Y~~~l~~~i~--~~~~~~kVvvD~~nG~~~~------~~~~ll~~lG~~v~~i 205 (448)
T PRK14318 158 TDRYLRHLLGALP--TRLDGLKVVVDCAHGAASG------VAPEAYRAAGADVIAI 205 (448)
T ss_pred HHHHHHHHHHHhc--cccCCCEEEEECCCchHHH------HHHHHHHHcCCEEEEe
Confidence 4567777777664 2335688999987765432 3456777778876543
No 417
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=36.49 E-value=2.1e+02 Score=30.50 Aligned_cols=86 Identities=19% Similarity=0.318 Sum_probs=50.1
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHH-----HH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE-----VV 183 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e-----vv 183 (302)
.++++||=|- .+ +...+...|+..|+++.+...... .++ .+..++|.||+.||-|+..+ .+
T Consensus 516 ~~~IlVID~g---ds-----~~~~l~~~L~~~G~~v~vv~~~~~---~~~---~~~~~~DgLILsgGPGsp~d~~~~~~I 581 (717)
T TIGR01815 516 GRRILLVDHE---DS-----FVHTLANYLRQTGASVTTLRHSHA---EAA---FDERRPDLVVLSPGPGRPADFDVAGTI 581 (717)
T ss_pred CCEEEEEECC---Ch-----hHHHHHHHHHHCCCeEEEEECCCC---hhh---hhhcCCCEEEEcCCCCCchhcccHHHH
Confidence 4566666542 11 124677888889988876654432 122 22346999999999999764 23
Q ss_pred HHHhcCccccccCCccEEEecCCChhhHHHhhh
Q 022147 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~ 216 (302)
..++.. ++|+--|=.|- =.++..++
T Consensus 582 ~~~~~~-------~iPvLGICLG~-QlLa~a~G 606 (717)
T TIGR01815 582 DAALAR-------GLPVFGVCLGL-QGMVEAFG 606 (717)
T ss_pred HHHHHC-------CCCEEEECHHH-HHHhhhhC
Confidence 333322 56665555553 44555553
No 418
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=36.48 E-value=2.9e+02 Score=24.11 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=37.7
Q ss_pred cCCCceEEEEcCCchHHHHHHHHhcCccc-------c----------ccCCccEEEecCCChhhHHHhhh
Q 022147 164 LSKYDGIVCVSGDGILVEVVNGLLEREDW-------N----------DAIKVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 164 ~~~~d~IVvvGGDGTl~evvngL~~~~~~-------~----------~~~~~plgiIP~GTgN~~A~sL~ 216 (302)
..++|.||++-+|-.+|+.+-........ + ..-.+.|+|--.|..=.+|+.+.
T Consensus 68 l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr 137 (202)
T PRK06718 68 IVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIR 137 (202)
T ss_pred cCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHH
Confidence 35788999999999999998876533211 0 01256688888888888888774
No 419
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=36.44 E-value=2.6e+02 Score=24.55 Aligned_cols=82 Identities=15% Similarity=0.128 Sum_probs=43.1
Q ss_pred EEEEEcCCCCCCchhhhHHHHHHHHHHhcC-CcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCc
Q 022147 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDAN-IQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (302)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~L~~ag-~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~ 190 (302)
+.|+++-- -..- .+++ ..+...++..| ..+-+..+.+ ....++.+.+ ..++|+||+++....-.. ...+...
T Consensus 2 ~~~~~~~~-~~~~-~~~~-~~i~~~l~~~g~~~l~~~~~~~-~~~~~~~~~~-~~~vdGvIi~~~~~~~~~-~~~~~~~- 74 (247)
T cd06276 2 ILLLLNKL-SSFK-EIIY-NSFVNTLGKNAQVDLYFHHYNE-DLFKNIISNT-KGKYSGYVVMPHFKNEIQ-YFLLKKI- 74 (247)
T ss_pred EEEEEecC-chHH-HHHH-HHHHHHHHhcCcEEEEEEcCch-HHHHHHHHHH-hcCCCEEEEecCCCCcHH-HHHHhcc-
Confidence 45666433 1112 2244 67888899998 5554444443 2222333333 468999999986532111 2233332
Q ss_pred cccccCCccEEEecC
Q 022147 191 DWNDAIKVPLGVVPA 205 (302)
Q Consensus 191 ~~~~~~~~plgiIP~ 205 (302)
.++|+.++.-
T Consensus 75 -----~~~PvV~i~~ 84 (247)
T cd06276 75 -----PKEKLLILDH 84 (247)
T ss_pred -----CCCCEEEEcC
Confidence 1567777653
No 420
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=36.42 E-value=95 Score=26.76 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH--HHhcCccccccCCccEEEecCCC
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN--GLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn--gL~~~~~~~~~~~~plgiIP~GT 207 (302)
...+..+|++.|.++.++..+.. ... ++...++|.||+.||=|...+.-. .+++.- ..++|+--|=.|-
T Consensus 12 t~nl~~~l~~~g~~v~v~~~~~~-~~~----~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~----~~~~PiLGIClG~ 82 (187)
T PRK08007 12 TWNLYQYFCELGADVLVKRNDAL-TLA----DIDALKPQKIVISPGPCTPDEAGISLDVIRHY----AGRLPILGVCLGH 82 (187)
T ss_pred HHHHHHHHHHCCCcEEEEeCCCC-CHH----HHHhcCCCEEEEcCCCCChHHCCccHHHHHHh----cCCCCEEEECHHH
Confidence 34677888888998888765432 222 233347999999999998877521 122210 1256765555553
Q ss_pred hhhHHHhhh
Q 022147 208 GNGMIKSLL 216 (302)
Q Consensus 208 gN~~A~sL~ 216 (302)
=.+|..++
T Consensus 83 -Q~la~a~G 90 (187)
T PRK08007 83 -QAMAQAFG 90 (187)
T ss_pred -HHHHHHcC
Confidence 45555554
No 421
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=36.36 E-value=1.4e+02 Score=25.95 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHH-------HHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV-------VNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev-------vngL~~~~~~~~~~~~plgiI 203 (302)
..+...|+..|.++++.....+ .. ..++|.||+.||-++..+- .+.+.+.- ..+.|+.-|
T Consensus 17 ~~~~~~l~~~g~~~~~~~~~~~-------~~--l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~----~~~~pilGI 83 (200)
T PRK13527 17 DALKRALDELGIDGEVVEVRRP-------GD--LPDCDALIIPGGESTTIGRLMKREGILDEIKEKI----EEGLPILGT 83 (200)
T ss_pred HHHHHHHHhcCCCeEEEEeCCh-------HH--hccCCEEEECCCcHHHHHHHHhhccHHHHHHHHH----HCCCeEEEE
Confidence 4677788889988887776542 12 2469999999998775321 11111100 125677777
Q ss_pred cCCChhhHHHhhh
Q 022147 204 PAGTGNGMIKSLL 216 (302)
Q Consensus 204 P~GTgN~~A~sL~ 216 (302)
=.|. -.++..++
T Consensus 84 C~G~-Qll~~~~g 95 (200)
T PRK13527 84 CAGL-ILLAKEVG 95 (200)
T ss_pred CHHH-HHHHhhhc
Confidence 6666 77777764
No 422
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=36.18 E-value=1.2e+02 Score=22.83 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=31.1
Q ss_pred EeCCcchHHHHHHHhhcCCCceEEEEcCCc-------hHHHHHHHHhcCccccccCCccEEEec
Q 022147 148 ETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-------ILVEVVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 148 ~T~~~~~a~el~~~~~~~~~d~IVvvGGDG-------Tl~evvngL~~~~~~~~~~~~plgiIP 204 (302)
......-+.++.+.+...++|.|| +|-.+ .+..+.+.++.. .++|+-++|
T Consensus 84 ~~~~~~~~~~i~~~~~~~~~dliv-~G~~~~~~~~~~~~gs~~~~l~~~------~~~pVlvv~ 140 (140)
T PF00582_consen 84 VIESGDVADAIIEFAEEHNADLIV-MGSRGRSGLERLLFGSVAEKLLRH------APCPVLVVP 140 (140)
T ss_dssp EEEESSHHHHHHHHHHHTTCSEEE-EESSSTTSTTTSSSHHHHHHHHHH------TSSEEEEEE
T ss_pred EEEeeccchhhhhccccccceeEE-EeccCCCCccCCCcCCHHHHHHHc------CCCCEEEeC
Confidence 333344455666666667788555 55555 345577777665 268888876
No 423
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.99 E-value=3.3e+02 Score=25.67 Aligned_cols=121 Identities=14% Similarity=0.134 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhhhcc----C-CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE---eCCcchHHHHHHHh
Q 022147 91 SKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKVL 162 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~----~-r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~---T~~~~~a~el~~~~ 162 (302)
.++...+.+++.+... + +|+=..|+++ ...+...|.+......++.|+.++++. +...++..+..+++
T Consensus 11 iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~l 86 (297)
T PRK14168 11 IREEILEEIRGEVAELKEKYGKVPGLVTILVG----ESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKY 86 (297)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555555544321 2 3433444444 455666787888889999999988764 33444455555665
Q ss_pred hc-CCCceEEEE---cCCchHHHHHHHHhcCccccccC----------CccEEEecCCChhhHHHhhh
Q 022147 163 DL-SKYDGIVCV---SGDGILVEVVNGLLEREDWNDAI----------KVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 163 ~~-~~~d~IVvv---GGDGTl~evvngL~~~~~~~~~~----------~~plgiIP~GTgN~~A~sL~ 216 (302)
.. ...|+|++- -..-.-+++++.+.-..|-+-.. +..-+++|| |..+...-|-
T Consensus 87 N~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~Pc-Tp~avi~lL~ 153 (297)
T PRK14168 87 NNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPC-TPAGIQEMLV 153 (297)
T ss_pred hCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHHHhcCCCCCCCcCC-CHHHHHHHHH
Confidence 43 345676663 23333455665554433322111 111245777 6666666553
No 424
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.82 E-value=3.7e+02 Score=25.14 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhhhcc----CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHh
Q 022147 90 DSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~----~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~ 162 (302)
+.++.+.+.+++.+... ++..++.+|.= |...+...|.+......++.|+.++.+.-. ..++..+..+++
T Consensus 9 ~ia~~i~~~lk~~v~~l~~~~g~~P~Laii~v---g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~l 85 (284)
T PRK14179 9 ALAQKMQAELAEKVAKLKEEKGIVPGLVVILV---GDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERY 85 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34556666666654432 22334444432 445566678777888999999998765543 233444555555
Q ss_pred hc-CCCceEEEE---cCCchHHHHHHHHhc
Q 022147 163 DL-SKYDGIVCV---SGDGILVEVVNGLLE 188 (302)
Q Consensus 163 ~~-~~~d~IVvv---GGDGTl~evvngL~~ 188 (302)
.. ...|+|++- -..=.-..+++.+.-
T Consensus 86 N~d~~V~GIivqlPlp~~i~~~~i~~~I~p 115 (284)
T PRK14179 86 NQDPTWHGILVQLPLPKHINEEKILLAIDP 115 (284)
T ss_pred hCCCCCCEEEEcCCCCCCCCHHHHHhccCc
Confidence 43 345666653 222223445555533
No 425
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=35.79 E-value=1.5e+02 Score=26.23 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=35.3
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCc-EEEEEeCCcchH--HHHHHHhhcCCCceEEEEcCCc
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ-FTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~-~~v~~T~~~~~a--~el~~~~~~~~~d~IVvvGGDG 177 (302)
+..++++|--+ ++. . .... +.....|+..|+. +++......+.+ .++.+.+ .+.|.|++.|||=
T Consensus 28 ~~~~i~~iptA-~~~-~-~~~~-~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l--~~ad~I~~~GG~~ 94 (217)
T cd03145 28 AGARIVVIPAA-SEE-P-AEVG-EEYRDVFERLGAREVEVLVIDSREAANDPEVVARL--RDADGIFFTGGDQ 94 (217)
T ss_pred CCCcEEEEeCC-CcC-h-hHHH-HHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHH--HhCCEEEEeCCcH
Confidence 44566555333 222 2 2223 5677888888874 444444322221 2333444 3689999999985
No 426
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=35.47 E-value=1.5e+02 Score=25.03 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=44.6
Q ss_pred HHHHHHHhcC---CcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchH-----------HHHHHHHhcCccccccCC
Q 022147 132 DVKPLLEDAN---IQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL-----------VEVVNGLLEREDWNDAIK 197 (302)
Q Consensus 132 ~v~~~L~~ag---~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl-----------~evvngL~~~~~~~~~~~ 197 (302)
....+|++++ ++++++....... ..+..++|+||+-||-.+. .+++..++.+ .
T Consensus 15 ~~~~~l~~~g~~~~~~~~~~~~~~~~------~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~-------~ 81 (188)
T cd01741 15 LFEDLLREAGAETIEIDVVDVYAGEL------LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAA-------G 81 (188)
T ss_pred hHHHHHHhcCCCCceEEEEecCCCCC------CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHC-------C
Confidence 4456677777 6777766655432 1234689999999997765 1222333332 5
Q ss_pred ccEEEecCCChhhHHHhhhh
Q 022147 198 VPLGVVPAGTGNGMIKSLLD 217 (302)
Q Consensus 198 ~plgiIP~GTgN~~A~sL~~ 217 (302)
.|+.-|=.|- -.++..+++
T Consensus 82 ~pilgiC~G~-q~l~~~lGG 100 (188)
T cd01741 82 KPVLGICLGH-QLLARALGG 100 (188)
T ss_pred CCEEEECccH-HHHHHHhCC
Confidence 6777777766 577777753
No 427
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=35.46 E-value=4e+02 Score=25.71 Aligned_cols=99 Identities=12% Similarity=0.132 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhhhcc----CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHh
Q 022147 90 DSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~----~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~ 162 (302)
+.++...+.+++.+... ++..++.+|.= |...+...|.+......++.|++++.+.-. ..++..+..+++
T Consensus 63 ~vA~~i~~~lk~~v~~l~~~~g~~P~LaiIlv---GddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~l 139 (345)
T PLN02897 63 VIAEEIRTKIASEVRKMKKAVGKVPGLAVVLV---GQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKF 139 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeEEEEEe---CCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35566666666655432 33334544432 455566678888888999999998876533 233444555555
Q ss_pred hc-CCCceEEEE---cCCchHHHHHHHHhcCcc
Q 022147 163 DL-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (302)
Q Consensus 163 ~~-~~~d~IVvv---GGDGTl~evvngL~~~~~ 191 (302)
.. ...|+|++- -..-.-+++++.+.-..|
T Consensus 140 N~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KD 172 (345)
T PLN02897 140 NEDTSIHGILVQLPLPQHLDESKILNMVRLEKD 172 (345)
T ss_pred hCCCCCCEEEEeCCCCCCCCHHHHHhccCcccC
Confidence 43 346677663 344455667776654444
No 428
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=35.26 E-value=2.2e+02 Score=22.27 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchH
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl 179 (302)
+.++..+++.++.+.+.... ..++++.+.....-..++++-||.+
T Consensus 74 ~~~~~~~~~~~~~~p~~~D~----~~~~~~~~~v~~~P~~~vid~~G~v 118 (126)
T cd03012 74 ANVKSAVLRYGITYPVANDN----DYATWRAYGNQYWPALYLIDPTGNV 118 (126)
T ss_pred HHHHHHHHHcCCCCCEEECC----chHHHHHhCCCcCCeEEEECCCCcE
Confidence 46777888888887755422 2345555555556677888888865
No 429
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.26 E-value=1.7e+02 Score=25.60 Aligned_cols=49 Identities=16% Similarity=-0.021 Sum_probs=31.0
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG 175 (302)
+|+.||-+.. +.- ..+...|+..|.++++..+..+++ + +++|.||+-|+
T Consensus 2 ~~~~iid~g~---gn~-----~s~~~al~~~g~~~~v~~~~~~~~-------l--~~~d~lIlpG~ 50 (209)
T PRK13146 2 MTVAIIDYGS---GNL-----RSAAKALERAGAGADVVVTADPDA-------V--AAADRVVLPGV 50 (209)
T ss_pred CeEEEEECCC---ChH-----HHHHHHHHHcCCCccEEEECCHHH-------h--cCCCEEEECCC
Confidence 5677666632 221 245567778888666666665432 2 57899999776
No 430
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=35.25 E-value=75 Score=31.28 Aligned_cols=96 Identities=24% Similarity=0.384 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCc---EEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 131 DDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 131 ~~v~~~L~~ag~~---~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
+.++.-|..+++. +.++++++.+...++.+ ++ +-.|.||==||-|.+..|.+.- .+| +|-.|.
T Consensus 160 ~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~-l~-~yiD~iIPRGg~~Li~~v~~~a----------~vP--Vi~~~~ 225 (417)
T COG0014 160 EVIQEALEKAGLPADAVQLIEDTDREEVLELLR-LD-GYIDLVIPRGGAGLIRRVVENA----------TVP--VIEHGV 225 (417)
T ss_pred HHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHh-hc-CceeEEEcCCcHHHHHHHHhCC----------cCC--EEecCc
Confidence 5677778888864 56677777777777776 32 3469999999999888876522 444 578888
Q ss_pred hhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEE
Q 022147 208 GNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATI 245 (302)
Q Consensus 208 gN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v 245 (302)
||.-.+- ....+++.|...+++.+++.-+++-.
T Consensus 226 G~CHiyv-----d~~ADld~A~~ii~nAKtqrPs~CNA 258 (417)
T COG0014 226 GNCHIYV-----DESADLDKALKIIVNAKTQRPSVCNA 258 (417)
T ss_pred ceEEEEe-----cccCCHHHHHHHHHcccCCCCcccch
Confidence 8875432 34558889999999999888777743
No 431
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=34.94 E-value=1.9e+02 Score=28.88 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhhccC--CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCc
Q 022147 91 SKRLWCEKLRDFIDSFG--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ 143 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~~--r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~ 143 (302)
....+.+.|.+.+.... +.+.+-|++++..|.+. ..+.++|+..|++
T Consensus 164 ~~~~Y~~~l~~~i~~~~~~~~~~~kVvvD~~~G~~~------~~~~~il~~LG~~ 212 (487)
T cd05799 164 IDDAYLEAVKKLLVNPELNEGKDLKIVYTPLHGVGG------KFVPRALKEAGFT 212 (487)
T ss_pred HHHHHHHHHHhhhcccccccCCCCcEEEeCCCCccH------HHHHHHHHHcCCC
Confidence 45667787777665321 34578899999777653 2356778887877
No 432
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=34.84 E-value=2.8e+02 Score=28.67 Aligned_cols=67 Identities=22% Similarity=0.250 Sum_probs=39.5
Q ss_pred HHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEE-EEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 97 EKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV-QETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 97 ~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v-~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
.+|.+.+.+. -..++.||+|-+ ++. +.+...|+++|+.+.. +-.++.++-......+.....|.+|+
T Consensus 506 kkL~eil~~~-~~ppiIIFvN~k----k~~----d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVa 573 (673)
T KOG0333|consen 506 KKLIEILESN-FDPPIIIFVNTK----KGA----DALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVA 573 (673)
T ss_pred HHHHHHHHhC-CCCCEEEEEech----hhH----HHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 5566666554 345689999953 222 4678899999987643 33333333222334444446777765
No 433
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=34.81 E-value=4e+02 Score=25.91 Aligned_cols=100 Identities=10% Similarity=0.125 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHhhhhcc----CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe-C--CcchHHHHHHH
Q 022147 89 EDSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-T--QQLHAKEIVKV 161 (302)
Q Consensus 89 ~~~~~~w~~~l~~~l~~~----~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T-~--~~~~a~el~~~ 161 (302)
.+.+++..+.+++.+... +...++.+|.= |...+...|.+......++.|++++.+.- + ..++..+..++
T Consensus 79 k~iA~~i~~~lk~~v~~lk~~~g~~P~LaiIlv---G~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~ 155 (364)
T PLN02616 79 KAVAKKIRDEITIEVSRMKESIGVVPGLAVILV---GDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISG 155 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345666666666654322 33334443332 34456667878888899999999776652 2 22334445555
Q ss_pred hhc-CCCceEEEE---cCCchHHHHHHHHhcCcc
Q 022147 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (302)
Q Consensus 162 ~~~-~~~d~IVvv---GGDGTl~evvngL~~~~~ 191 (302)
+.. ...|+|++- -..=.-.++++.+.-..|
T Consensus 156 LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KD 189 (364)
T PLN02616 156 FNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKD 189 (364)
T ss_pred HcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccC
Confidence 543 345676653 233334456666544433
No 434
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=34.80 E-value=1.6e+02 Score=25.53 Aligned_cols=21 Identities=14% Similarity=-0.040 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEe
Q 022147 129 FLDDVKPLLEDANIQFTVQET 149 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T 149 (302)
+.+.++..|+..|+++.-+-+
T Consensus 14 lK~~l~~~L~~~G~eV~D~G~ 34 (171)
T PRK12615 14 EKMAVSDFLKSKGYDVIDCGT 34 (171)
T ss_pred HHHHHHHHHHHCCCEEEEcCC
Confidence 346888999999987754443
No 435
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.80 E-value=3.9e+02 Score=25.03 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhhhcc---CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC---cchHHHHHHHhhc
Q 022147 91 SKRLWCEKLRDFIDSF---GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDL 164 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~---~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~---~~~a~el~~~~~~ 164 (302)
.++...+.+++.+... +...++.+|. .|...+...|.+.....+++.|++++++.-.. .++..+..+++..
T Consensus 11 vA~~i~~~l~~~v~~l~~~g~~P~Laii~---vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 87 (284)
T PRK14190 11 VAKEKREQLKEEVVKLKEQGIVPGLAVIL---VGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNA 87 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEE---eCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444555555544322 3333454443 24555666788888899999999998765432 2334444555533
Q ss_pred -CCCceEEEE---cCCchHHHHHHHHhcCccccccCCc--------cEEEecCCChhhHHHhhh
Q 022147 165 -SKYDGIVCV---SGDGILVEVVNGLLEREDWNDAIKV--------PLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 165 -~~~d~IVvv---GGDGTl~evvngL~~~~~~~~~~~~--------plgiIP~GTgN~~A~sL~ 216 (302)
...|+|++- -..=.-+++++.+.-..|-+-.... .-+++|| |..+.-.-|-
T Consensus 88 D~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~Pc-Tp~av~~lL~ 150 (284)
T PRK14190 88 DPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMMLGQDTFLPC-TPHGILELLK 150 (284)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHHHhcCCCCCCCC-CHHHHHHHHH
Confidence 245666653 2233344555555333332111100 0135676 6666665553
No 436
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=34.70 E-value=3.4e+02 Score=24.51 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=38.9
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcE-EEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQF-TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~-~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
.+++.++.+... -++ ... +.++..|+ +..+ +........+...+++++...++|.|++.+.......+++.+.
T Consensus 134 ~~~v~il~~~~~-~~~--~~~-~~~~~~~~--~~~~~~~~~~~~~~d~~~~i~~l~~~~~d~i~~~~~~~~~~~~~~~~~ 207 (333)
T cd06332 134 YKKVVIIAPDYA-AGK--DAV-AGFKRTFK--GEVVEEVYTPLGQLDFSAELAQIRAAKPDAVFVFLPGGMAVNFVKQYD 207 (333)
T ss_pred CceEEEEecCcc-hhH--HHH-HHHHHhhc--EEEeeEEecCCCCcchHHHHHHHHhcCCCEEEEecccchHHHHHHHHH
Confidence 577887775432 222 222 34555555 2111 1111111223344555666677898888765455566777776
Q ss_pred cC
Q 022147 188 ER 189 (302)
Q Consensus 188 ~~ 189 (302)
..
T Consensus 208 ~~ 209 (333)
T cd06332 208 QA 209 (333)
T ss_pred Hc
Confidence 54
No 437
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=34.56 E-value=1.7e+02 Score=25.36 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEeC------CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEE
Q 022147 129 FLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~------~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgi 202 (302)
+.+.+...|++.|+++.-+-+. ++.-+. .|...+... ....||
T Consensus 14 lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~------------------------~va~~V~~g-------~~~~GI 62 (171)
T TIGR01119 14 VKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGK------------------------KVGEAVVSG-------EADLGV 62 (171)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHH------------------------HHHHHHHcC-------CCCEEE
Confidence 3468899999999877654442 222222 233333332 456788
Q ss_pred ecCCChhhHHHhhh
Q 022147 203 VPAGTGNGMIKSLL 216 (302)
Q Consensus 203 IP~GTgN~~A~sL~ 216 (302)
+=||||.+++-+.+
T Consensus 63 liCGTGiG~siaAN 76 (171)
T TIGR01119 63 CICGTGVGINNAVN 76 (171)
T ss_pred EEcCCcHHHHHHHh
Confidence 88888888877765
No 438
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=34.52 E-value=3.1e+02 Score=23.78 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE---EEEe-CCcchHHHHHHHhhc
Q 022147 89 EDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT---VQET-TQQLHAKEIVKVLDL 164 (302)
Q Consensus 89 ~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~---v~~T-~~~~~a~el~~~~~~ 164 (302)
.+......+.|.+ ...+++.+|..+..........+ +-++..++++++++. +... ...+.+.+.++.+..
T Consensus 101 ~~~~~~~~~~l~~-----~g~~~i~~l~~~~~~~~~~~~r~-~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (268)
T cd06298 101 KKAAFEATELLIK-----NGHKKIAFISGPLEDSINGDERL-AGYKEALSEANIEFDESLIFEGDYTYESGYELAEELLE 174 (268)
T ss_pred HHHHHHHHHHHHH-----cCCceEEEEeCCcccccchhHHH-HHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHhc
Confidence 3444444444433 24578888865432111222222 456677887776542 2222 223445556655543
Q ss_pred CC-CceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 165 SK-YDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 165 ~~-~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
.. +++|+ +.+|.+...++..|.++.-. .+-.+.++-.+.
T Consensus 175 ~~~~~ai~-~~~d~~a~~~~~~l~~~g~~---vp~di~vvg~d~ 214 (268)
T cd06298 175 DGKPTAAF-VTDDELAIGILNAAQDAGLK---VPEDFEIIGFNN 214 (268)
T ss_pred CCCCCEEE-EcCcHHHHHHHHHHHHcCCC---CccceEEEeecc
Confidence 33 66666 57899888899998765310 111366666653
No 439
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.48 E-value=3.9e+02 Score=25.01 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhhhcc----CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHh
Q 022147 90 DSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~----~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~ 162 (302)
+.++++.+.+++.+... ++..++.+|.= |...+...|.+.....+++.|+.++.+.-. +.++..+..+++
T Consensus 10 ~va~~i~~~lk~~v~~l~~~~~~~P~Laii~v---g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~l 86 (285)
T PRK10792 10 TIAQQVRSEVAQKVQARVAAGLRAPGLAVVLV---GSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDEL 86 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCceEEEEEe---CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34555666666554332 23234444332 445566678888889999999997766542 444455555665
Q ss_pred hc-CCCceEEEE---cCCchHHHHHHHHhcCccccccCCc--------cEEEecCCChhhHHHhhh
Q 022147 163 DL-SKYDGIVCV---SGDGILVEVVNGLLEREDWNDAIKV--------PLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 163 ~~-~~~d~IVvv---GGDGTl~evvngL~~~~~~~~~~~~--------plgiIP~GTgN~~A~sL~ 216 (302)
.. ...++|++- -..=.-.++++.+--..|-+-.... .-+++|| |..+...-|.
T Consensus 87 N~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~Pc-Tp~av~~ll~ 151 (285)
T PRK10792 87 NADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQRIPLLRPC-TPRGIMTLLE 151 (285)
T ss_pred hCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHhHHhCCCCCCCCC-CHHHHHHHHH
Confidence 43 346677664 2333345666665443332211100 1135777 7777777664
No 440
>PRK09526 lacI lac repressor; Reviewed
Probab=34.44 E-value=3.6e+02 Score=24.61 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=41.0
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc--chHHHHHHHhhcCCCceEEEEcC
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ--LHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~--~~a~el~~~~~~~~~d~IVvvGG 175 (302)
+.+.+.++++...... ...++ +.++..+.+.|+.+.+..+... ....++.+.+...++|+||+.+.
T Consensus 62 ~~~~Igvv~~~~~~~~-~~~~~-~gi~~~a~~~g~~~~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~~~ 129 (342)
T PRK09526 62 QSLTIGLATTSLALHA-PSQIA-AAIKSRADQLGYSVVISMVERSGVEACQAAVNELLAQRVSGVIINVP 129 (342)
T ss_pred CCceEEEEeCCCCccc-HHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4456788875433222 22333 6788888888988877665432 22335556666678999998643
No 441
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=34.10 E-value=1.1e+02 Score=26.44 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCcEE--EEEeCCcchHHHHHHHhhcCCCceEEEEcCCch-----HHHHHHHHhcC
Q 022147 131 DDVKPLLEDANIQFT--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLLER 189 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~--v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGT-----l~evvngL~~~ 189 (302)
+.+..+|+++|+++. ....+..........++..+.+|.|+.-||=|- =-|++..++++
T Consensus 30 ~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RDvTpEA~~~~~dK 95 (169)
T COG0521 30 PLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFDK 95 (169)
T ss_pred hHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCcCCHHHHHHHHhc
Confidence 567888999988651 222333333333333332233899999999883 24566666665
No 442
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=33.97 E-value=2.3e+02 Score=24.23 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=55.3
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCc---EEEEEeCCcchHHHHHHHhhc-CCCceEEEEc----CCch-
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLDL-SKYDGIVCVS----GDGI- 178 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~---~~v~~T~~~~~a~el~~~~~~-~~~d~IVvvG----GDGT- 178 (302)
.+.|+.|++-.+-.. -..+.. +-....|..+|+. ++++.....-+..-.++.+.. .+||+||++| |+-.
T Consensus 9 ~~~riaIV~srfn~~-It~~Ll-~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H 86 (158)
T PRK12419 9 TPQRIAFIQARWHAD-IVDQAR-KGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYR 86 (158)
T ss_pred CCCEEEEEEecCCHH-HHHHHH-HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCch
Confidence 446888887544322 223333 4555677788853 566655555555555555543 5799999988 4433
Q ss_pred ----HHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 179 ----LVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 179 ----l~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
-+++.+||++-.- +...++-+|+|-..|
T Consensus 87 ~e~V~~~v~~gl~~vsl-~~~~PV~fGVLT~~~ 118 (158)
T PRK12419 87 HEFVAQAVIDGLMRVQL-DTEVPVFSVVLTPHH 118 (158)
T ss_pred hHHHHHHHHHHHHHHHh-ccCCCEEEEecCCCc
Confidence 4466777765421 112344556665555
No 443
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=33.91 E-value=1.7e+02 Score=24.69 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
.++.++......|++++.+.+.+.++..+..++.. .++|+||+
T Consensus 31 i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~-~~~dgiII 73 (146)
T PRK13015 31 VEALCRAAAEALGLEVEFRQSNHEGELIDWIHEAR-GDVAGIVI 73 (146)
T ss_pred HHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhh-hcCCEEEE
Confidence 34566666667799999999999998888777763 45677663
No 444
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=33.88 E-value=44 Score=26.30 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.1
Q ss_pred EeeEEecCCChHHHHHHHHHHHhh
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDF 102 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~ 102 (302)
.+++.|...|+++.+.|++.|+.+
T Consensus 77 ~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 77 DKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred CceEEEEeCCHHHHHHHHHHHHhh
Confidence 478999999999999999998764
No 445
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=33.83 E-value=1.3e+02 Score=30.88 Aligned_cols=66 Identities=11% Similarity=0.185 Sum_probs=46.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+.++.||--|.-- .+ + +.+..+| +++++.+...+.+++...++++...+++.|| |||+..+.+..+
T Consensus 107 ~~~iavv~~~~~~--~~---~-~~~~~~l---~~~i~~~~~~~~~e~~~~v~~lk~~G~~~vv---G~~~~~~~A~~~ 172 (538)
T PRK15424 107 TSSIGVVTYQETI--PA---L-VAFQKTF---NLRIEQRSYVTEEDARGQINELKANGIEAVV---GAGLITDLAEEA 172 (538)
T ss_pred CCcEEEEecCccc--HH---H-HHHHHHh---CCceEEEEecCHHHHHHHHHHHHHCCCCEEE---cCchHHHHHHHh
Confidence 4567777655332 11 2 3455555 5778888888899999999999888898877 778887765544
No 446
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=33.81 E-value=3.6e+02 Score=25.10 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=44.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+|+.+|..-. .-++. +.+.++..|++.|.++..... ....+...++.++...++|.|++.+.-.-...++..
T Consensus 132 g~k~vaii~~d~-~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~ 207 (348)
T cd06355 132 GGKRFYLVGSDY-VYPRT---ANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVSTVNGDSNVAFFKQ 207 (348)
T ss_pred CCCeEEEECCcc-hHHHH---HHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHHhCCCEEEEeccCCchHHHHHH
Confidence 467887765432 22222 235778889999987643221 123344455666666789988775433334556666
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+...
T Consensus 208 ~~~~ 211 (348)
T cd06355 208 LKAA 211 (348)
T ss_pred HHHc
Confidence 6554
No 447
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=33.73 E-value=2e+02 Score=23.93 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=50.8
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcE---EEEEeCCcchHHHHHHHhh-cCCCceEEEEc----CCchH---
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQF---TVQETTQQLHAKEIVKVLD-LSKYDGIVCVS----GDGIL--- 179 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~---~v~~T~~~~~a~el~~~~~-~~~~d~IVvvG----GDGTl--- 179 (302)
|+.|++-.+--. -..+.. +.....|...|+.. +++.....-+..-.++.+. ..+||+||+.| |+-.=
T Consensus 2 ri~IV~s~~n~~-i~~~L~-~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~ 79 (138)
T TIGR00114 2 RVGIVIARFNRD-ITDMLL-KGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPHFEY 79 (138)
T ss_pred EEEEEEecCCHH-HHHHHH-HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhHH
Confidence 455555433221 222233 45667788888764 4554444444444455554 35799999998 65543
Q ss_pred --HHHHHHHhcCccccccCCccEEEecCCC
Q 022147 180 --VEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 180 --~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
+++.+||++-.- +...++-+|+|-.++
T Consensus 80 v~~~v~~gl~~~sl-~~~~PV~~GvLt~~~ 108 (138)
T TIGR00114 80 VADEAAKGIADLAL-DYDKPVIFGILTTGT 108 (138)
T ss_pred HHHHHHHHHHHHHh-hhCCCEEEEecCCCC
Confidence 345667755321 112345556665555
No 448
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=33.72 E-value=2.3e+02 Score=27.82 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE 148 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~ 148 (302)
.+.|.+.|.+.++.. .+++-|++.+..|.+. ..+.++|+..|+++..+.
T Consensus 156 ~~~Y~~~l~~~i~~~--~~~lkvvvD~~nG~~~------~~~~~ll~~lg~~v~~in 204 (448)
T PRK14316 156 LRKYLQFLKSTIDED--LSGLKVALDCANGATS------SLAPRLFADLGADVTVIG 204 (448)
T ss_pred HHHHHHHHHHhcCcc--cCCCEEEEECCCchhh------HHHHHHHHHcCCeEEEEc
Confidence 345777776666421 2468899998666542 245677888888776543
No 449
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=33.72 E-value=3.6e+02 Score=24.29 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=59.4
Q ss_pred CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHH------------hhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 121 GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV------------LDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 121 G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~------------~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
|.|+.. .+++..+++ .|..++|+-.+-..+..++++. -+..+++.|+++-+|-.+|+-+-....
T Consensus 32 GGG~VA---~RK~~~Ll~-~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~ 107 (223)
T PRK05562 32 GGGKAA---FIKGKTFLK-KGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKIRKHCD 107 (223)
T ss_pred CCCHHH---HHHHHHHHh-CCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHHHHHHH
Confidence 545533 246665555 6778888766655555555431 224578889999999999998888875
Q ss_pred Ccc-c-------cc----------cCCccEEEecCCChhhHHHhh
Q 022147 189 RED-W-------ND----------AIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 189 ~~~-~-------~~----------~~~~plgiIP~GTgN~~A~sL 215 (302)
... + +. .-++.|+|--.|..=.+|+.+
T Consensus 108 ~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~l 152 (223)
T PRK05562 108 RLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFI 152 (223)
T ss_pred HcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHH
Confidence 421 1 00 114667888888888888877
No 450
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=33.72 E-value=66 Score=28.96 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=26.3
Q ss_pred CCCceEEEEcCCchHH---------HHHHHHhcCccccccCCccEEEecCCCh
Q 022147 165 SKYDGIVCVSGDGILV---------EVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 165 ~~~d~IVvvGGDGTl~---------evvngL~~~~~~~~~~~~plgiIP~GTg 208 (302)
.+||+|++.||=|... +++..+.+. .-+++.|=.|..
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~-------gK~VaAICHGp~ 140 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKN-------DRFVITLCHGPA 140 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHc-------CCEEEEECcHHH
Confidence 5799999999988654 455555544 557887777764
No 451
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.68 E-value=3.9e+02 Score=24.91 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhhhcc---C--CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHh
Q 022147 91 SKRLWCEKLRDFIDSF---G--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~---~--r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~ 162 (302)
.++++.+.+++.+... + +|+=..|+++ ...+...|.+......++.|+.++.+.-. +.++..+..+++
T Consensus 10 iA~~i~~~lk~~i~~l~~~g~~~P~Laii~vg----~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~l 85 (278)
T PRK14172 10 VALKIKEEIKNFVEERKENGLSIPKIASILVG----NDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEEL 85 (278)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4555666666554322 2 2433334444 44566677778888999999998876532 233444555555
Q ss_pred hc-CCCceEEEE---cCCchHHHHHHHHhcCccccccCCcc--------EEEecCCChhhHHHhhh
Q 022147 163 DL-SKYDGIVCV---SGDGILVEVVNGLLEREDWNDAIKVP--------LGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 163 ~~-~~~d~IVvv---GGDGTl~evvngL~~~~~~~~~~~~p--------lgiIP~GTgN~~A~sL~ 216 (302)
.. .+.|+|++- -..=.-+++++.+.-..|-+-....- -+++|| |..+..+-|.
T Consensus 86 N~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~Pc-Tp~av~~lL~ 150 (278)
T PRK14172 86 NKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKGEKCFLPC-TPNSVITLIK 150 (278)
T ss_pred hCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHHhCCCCCCcCC-CHHHHHHHHH
Confidence 43 346777764 23444556666664443322111111 135677 7776666554
No 452
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=33.43 E-value=1.4e+02 Score=24.24 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCcEE--EEEeCCcchHHHHHHHhhcCCCceEEEEcCCc-----hHHHHHHHHhc
Q 022147 131 DDVKPLLEDANIQFT--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-----ILVEVVNGLLE 188 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~--v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDG-----Tl~evvngL~~ 188 (302)
..+..+|++.|+++. .+..+.+....+..++.. ++.|.||+.||=| -..+++..+..
T Consensus 20 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~-~~~D~VittGG~g~~~~D~t~~a~~~~~~ 83 (144)
T PF00994_consen 20 PFLAALLEELGIEVIRYGIVPDDPDAIKEALRRAL-DRADLVITTGGTGPGPDDVTPEALAEAGG 83 (144)
T ss_dssp HHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHH-HTTSEEEEESSSSSSTTCHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhh-ccCCEEEEcCCcCcccCCcccHHHHHhcC
Confidence 467889999998664 233344444444443332 3569999999866 24455554444
No 453
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=33.40 E-value=1.9e+02 Score=20.97 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG 175 (302)
..+...|+..|+.+++.... .......+.+...++..++++|.
T Consensus 21 ~~~~~~Lr~~g~~v~~~~~~--~~~~k~~~~a~~~g~~~~iiig~ 63 (94)
T cd00738 21 QKLLNALLANGIRVLYDDRE--RKIGKKFREADLRGVPFAVVVGE 63 (94)
T ss_pred HHHHHHHHHCCCEEEecCCC--cCHhHHHHHHHhCCCCEEEEECC
Confidence 35667788888877664432 23333334445567889999995
No 454
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=33.38 E-value=1.2e+02 Score=25.61 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=51.8
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchH--------H----HHHHHhhcCCCceEEEEcC-
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA--------K----EIVKVLDLSKYDGIVCVSG- 175 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a--------~----el~~~~~~~~~d~IVvvGG- 175 (302)
++++++++++ |--... .+ .-...|+.+|..+++...+..... . ......+..+||.|++.||
T Consensus 2 ~~~i~i~~~~--g~e~~E-~~--~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~ 76 (188)
T COG0693 2 MKKIAILLAD--GFEDLE-LI--VPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGD 76 (188)
T ss_pred CceeEEEecC--cceehh-Hh--HHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCc
Confidence 4577788887 322222 22 234568888888776655542000 0 1111222247999999999
Q ss_pred CchH--------HHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 176 DGIL--------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 176 DGTl--------~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
.|+. .+.+..+... .-+++-|=.|+.--.+..
T Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~-------~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 77 HGPEYLRPDPDLLAFVRDFYAN-------GKPVAAICHGPAVLAAAG 116 (188)
T ss_pred cchhhccCcHHHHHHHHHHHHc-------CCEEEEEChhHHHHhccc
Confidence 5553 3333333333 668888877774444333
No 455
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=33.31 E-value=2.4e+02 Score=22.26 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=25.3
Q ss_pred HHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE-cCCchH
Q 022147 133 VKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV-SGDGIL 179 (302)
Q Consensus 133 v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv-GGDGTl 179 (302)
....+...++.++.......+-+..+.+.....+.|.||+. .|-+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l 117 (146)
T cd01989 70 YRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHF 117 (146)
T ss_pred HHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCce
Confidence 33445556776665554332235566666665667765554 345543
No 456
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=33.27 E-value=3.9e+02 Score=24.60 Aligned_cols=67 Identities=7% Similarity=0.112 Sum_probs=39.3
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCC
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGD 176 (302)
+.+.+.|++.-.+. .-...++ +.+...+++.|..+.+..+.. .+.-.+..+.+...+.|+||+++.+
T Consensus 58 ~~~~Igvi~~~~~~-~f~~~l~-~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 125 (346)
T PRK10401 58 VSDTIGVVVMDVSD-AFFGALV-KAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSKA 125 (346)
T ss_pred CCCEEEEEeCCCCC-ccHHHHH-HHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 44567777743322 2222233 567778888887765554432 2222345555655689999998754
No 457
>PRK09492 treR trehalose repressor; Provisional
Probab=33.11 E-value=3.7e+02 Score=24.25 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=39.9
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCC
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGD 176 (302)
+.+.+.+|+.-..... ...+. +.+...+++.|+.+.+..+.... ...+..+.+...++|+||+.+-+
T Consensus 61 ~~~~Ig~i~~~~~~~~-~~~~~-~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 128 (315)
T PRK09492 61 SDKVVGIIVSRLDSLS-ENQAV-RTMLPAFYEQGYDPIIMESQFSPEKVNEHLGVLKRRNVDGVILFGFT 128 (315)
T ss_pred CCCeEEEEecCCcCcc-cHHHH-HHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 4456778774322222 22333 57778888889877665554322 22344555655679999998753
No 458
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=33.03 E-value=51 Score=23.36 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=20.3
Q ss_pred EeeEEecCCChHHHHHHHHHHHh
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRD 101 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~ 101 (302)
.+.+.|.++++++++.|.++|++
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhc
Confidence 57889999999999999999865
No 459
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=32.97 E-value=2.2e+02 Score=24.10 Aligned_cols=97 Identities=22% Similarity=0.333 Sum_probs=54.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC---cEEEEEeCCcchHHHHHHHhh-cCCCceEEEEc----CCchH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI---QFTVQETTQQLHAKEIVKVLD-LSKYDGIVCVS----GDGIL 179 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~---~~~v~~T~~~~~a~el~~~~~-~~~~d~IVvvG----GDGTl 179 (302)
.+.|+.|+.-.+--. -..... +.....|...|+ .++++.....-+.--.++.+. ..+||+||++| |+=.-
T Consensus 11 ~~~riaIV~s~~n~~-i~~~l~-~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T~H 88 (154)
T PRK00061 11 KGLRIGIVVARFNDF-ITDALL-EGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAESGKYDAVIALGAVIRGETPH 88 (154)
T ss_pred CCCEEEEEEecCcHH-HHHHHH-HHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCCch
Confidence 456888888654432 222333 466677888884 456655554445444455544 35799999988 55432
Q ss_pred -----HHHHHHHhcCccccccCCccEEEecCCC
Q 022147 180 -----VEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 180 -----~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
+++.++|++-.- +...++-+|++-..+
T Consensus 89 ~e~V~~~v~~gl~~v~l-~~~~PV~~GVLt~~~ 120 (154)
T PRK00061 89 FDYVANEVAKGLADVSL-ETGVPVGFGVLTTDT 120 (154)
T ss_pred HHHHHHHHHHHHHHHHh-ccCCCEEEEecCCCC
Confidence 355666755321 112344556666554
No 460
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=32.87 E-value=2.2e+02 Score=24.58 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=32.4
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ 180 (302)
++++.|++|. |.-. .....|+..|.++..+ ..+ .. .+++|+||+-||-++..
T Consensus 1 ~m~~~i~~~~--g~~~-------~~~~~l~~~g~~~~~~--~~~-------~~--l~~~dgiii~GG~~~~~ 52 (189)
T PRK13525 1 MMKIGVLALQ--GAVR-------EHLAALEALGAEAVEV--RRP-------ED--LDEIDGLILPGGESTTM 52 (189)
T ss_pred CCEEEEEEcc--cCHH-------HHHHHHHHCCCEEEEe--CCh-------hH--hccCCEEEECCCChHHH
Confidence 3578899986 3211 1224467778766544 221 12 35799999999988764
No 461
>PRK07053 glutamine amidotransferase; Provisional
Probab=32.87 E-value=72 Score=28.72 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=37.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl 179 (302)
+++++||-|-..-.- ..+...|+..|..++++..... +. ...+..++|.||+.||-..+
T Consensus 2 m~~ilviqh~~~e~~-------g~i~~~L~~~g~~~~v~~~~~~-~~----~~~~~~~~d~lii~Ggp~~~ 60 (234)
T PRK07053 2 MKTAVAIRHVAFEDL-------GSFEQVLGARGYRVRYVDVGVD-DL----ETLDALEPDLLVVLGGPIGV 60 (234)
T ss_pred CceEEEEECCCCCCC-------hHHHHHHHHCCCeEEEEecCCC-cc----CCCCccCCCEEEECCCCCCC
Confidence 678999988544321 2356778888988877655321 11 01123479999999986543
No 462
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=32.72 E-value=1.3e+02 Score=30.73 Aligned_cols=66 Identities=12% Similarity=0.208 Sum_probs=45.8
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+.++.||--|.-- .+ + +.+..+| +++++.+...+.+++...++++...+++.|| ||++..+.+..+
T Consensus 97 ~~~ia~vg~~~~~--~~---~-~~~~~ll---~~~i~~~~~~~~~e~~~~~~~l~~~G~~~vi---G~~~~~~~A~~~ 162 (526)
T TIGR02329 97 ASSIGVVTHQDTP--PA---L-RRFQAAF---NLDIVQRSYVTEEDARSCVNDLRARGIGAVV---GAGLITDLAEQA 162 (526)
T ss_pred CCcEEEEecCccc--HH---H-HHHHHHh---CCceEEEEecCHHHHHHHHHHHHHCCCCEEE---CChHHHHHHHHc
Confidence 4567777655332 11 1 3455555 5778888888899999999999888888877 777777665443
No 463
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=32.55 E-value=2.9e+02 Score=27.32 Aligned_cols=51 Identities=12% Similarity=0.248 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV 146 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v 146 (302)
.+.|.+.|.+.++. .+-+++-|+++|..|.+.. ++ ..+.++|+..|+++++
T Consensus 152 ~~~Yi~~l~~~id~-~~~~~lkVvvD~~~G~~~~--~~-~~l~~~l~~lG~~v~v 202 (456)
T PRK15414 152 RDAYVDHLFGYINV-KNLTPLKLVINSGNGAAGP--VV-DAIEARFKALGAPVEL 202 (456)
T ss_pred HHHHHHHHHHhccc-ccCCCCEEEEECCCCcchh--hH-HHHHHHHHhcCCCeEE
Confidence 35577777666532 1125788999998776543 33 4554568888875554
No 464
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=32.41 E-value=1.2e+02 Score=27.18 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=36.5
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCch---HHHHHHHHhcCccccccCCccEEEecCCChhh
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGI---LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNG 210 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGT---l~evvngL~~~~~~~~~~~~plgiIP~GTgN~ 210 (302)
...++.+.+...+.|.|++.|=||. +.+++..+.+..+ .+|+.+.|....+.
T Consensus 13 ~~~~~~~~~~~~gtdai~vGGS~~v~~~~~~~~~~ik~~~~-----~~Pvilfp~~~~~i 67 (219)
T cd02812 13 VDEEIAKLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRIRR-----PVPVILFPSNPEAV 67 (219)
T ss_pred CHHHHHHHHHhcCCCEEEECCccchhhhHHHHHHHHHHhcC-----CCCEEEeCCCcccc
Confidence 3445666555578999999999975 6667766655421 49999999887644
No 465
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=32.36 E-value=1.3e+02 Score=27.01 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCc
Q 022147 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDG 177 (302)
.+...|+.+|+++.++..+.... ...+..+||+||+.||-.
T Consensus 14 ~~~~al~~aG~~v~~v~~~~~~~-----~~~~l~~~d~liipGG~~ 54 (238)
T cd01740 14 DMAYAFELAGFEAEDVWHNDLLA-----GRKDLDDYDGVVLPGGFS 54 (238)
T ss_pred HHHHHHHHcCCCEEEEeccCCcc-----ccCCHhhCCEEEECCCCC
Confidence 45667888999887665432111 122235799999999943
No 466
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=32.12 E-value=2.1e+02 Score=28.13 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE
Q 022147 93 RLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (302)
Q Consensus 93 ~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~ 147 (302)
+.+.+.+.+.+... +..+.-|++++..|.+. ..+.++|+..|+++..+
T Consensus 155 ~~Y~~~l~~~~~~~-~~~~~kVvvD~~nG~~~------~~~~~ll~~lg~~v~~i 202 (443)
T PRK14320 155 DEYIESIHSRFAKF-VNYKGKVVVDCAHGAAS------HNFEALLDKFGINYVSI 202 (443)
T ss_pred HHHHHHHHHHHHhh-ccCCCEEEEECCCchHH------HHHHHHHHHcCCcEEEE
Confidence 45666666554311 11235889998766543 24567788888876543
No 467
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=32.04 E-value=38 Score=31.43 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=33.9
Q ss_pred EEcCC-CCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc----------chHHHHHHHhhcCCCceEE-EEcCCchH
Q 022147 115 FVNPF-GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIV-CVSGDGIL 179 (302)
Q Consensus 115 ivNP~-sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~----------~~a~el~~~~~~~~~d~IV-vvGGDGTl 179 (302)
|+.|. +. -.. ..+ +.....|+..|+++.+..+-.. ..|.++.+.+.....|+|+ +-||+|+.
T Consensus 3 ivaPS~~~-~~~-~~l-~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~~ 76 (284)
T PF02016_consen 3 IVAPSLSP-IDP-ERL-ERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYGAN 76 (284)
T ss_dssp EE-SSHHH-HCH-HHH-HHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-GG
T ss_pred EEeCCCCc-cCH-HHH-HHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccccHH
Confidence 67787 22 222 345 4677889988887766544222 2334555555556677777 56999974
No 468
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=31.96 E-value=2.4e+02 Score=26.34 Aligned_cols=76 Identities=24% Similarity=0.368 Sum_probs=45.4
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcC--CcEEEEEeCCcch--HHHHHHHh---hcC----CCceEEEEcC
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDAN--IQFTVQETTQQLH--AKEIVKVL---DLS----KYDGIVCVSG 175 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag--~~~~v~~T~~~~~--a~el~~~~---~~~----~~d~IVvvGG 175 (302)
.-|+++.||-.|. +.|.. .+...++..+ +++.++.+.-.|+ +.++++.+ +.. .+|+||++=|
T Consensus 12 ~~p~~I~vITs~~---gAa~~----D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RG 84 (319)
T PF02601_consen 12 KFPKRIAVITSPT---GAAIQ----DFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRG 84 (319)
T ss_pred CCCCEEEEEeCCc---hHHHH----HHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecC
Confidence 3578999998873 34432 3444444443 4566666654333 34555544 222 5999999999
Q ss_pred CchHHH--------HHHHHhcC
Q 022147 176 DGILVE--------VVNGLLER 189 (302)
Q Consensus 176 DGTl~e--------vvngL~~~ 189 (302)
=|.+-+ |+..+...
T Consensus 85 GGs~eDL~~FN~e~varai~~~ 106 (319)
T PF02601_consen 85 GGSIEDLWAFNDEEVARAIAAS 106 (319)
T ss_pred CCChHHhcccChHHHHHHHHhC
Confidence 998765 45555554
No 469
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=31.92 E-value=2.3e+02 Score=21.63 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhhhccCCCcEEEEEEcCCCC--CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCC
Q 022147 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGG--KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKY 167 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG--~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~ 167 (302)
+.+-.|...+.... +.+=.++-+++|... ...+.+.. +.....++..++++.+....+ -+..+.+.....+.
T Consensus 13 ~~al~~a~~la~~~---~~~l~ll~v~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~--~~~~I~~~~~~~~~ 86 (124)
T cd01987 13 ERLIRRAARLADRL---KAPWYVVYVETPRLNRLSEAERRRL-AEALRLAEELGAEVVTLPGDD--VAEAIVEFAREHNV 86 (124)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEEEecCccccCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCc--HHHHHHHHHHHcCC
Confidence 34555666554432 233344444554432 12333333 455666777777654433322 34556666655667
Q ss_pred ceEEEEc-CCchHHH
Q 022147 168 DGIVCVS-GDGILVE 181 (302)
Q Consensus 168 d~IVvvG-GDGTl~e 181 (302)
|.||+.. |.|.+..
T Consensus 87 dllviG~~~~~~~~~ 101 (124)
T cd01987 87 TQIVVGKSRRSRWRE 101 (124)
T ss_pred CEEEeCCCCCchHHH
Confidence 7554432 3444444
No 470
>PRK08284 precorrin 6A synthase; Provisional
Probab=31.79 E-value=1e+02 Score=28.18 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=30.6
Q ss_pred cCCCceEEEEcCCchHHH----HHHHHhcCccccccCCccEEEecCC-ChhhHHHhh
Q 022147 164 LSKYDGIVCVSGDGILVE----VVNGLLEREDWNDAIKVPLGVVPAG-TGNGMIKSL 215 (302)
Q Consensus 164 ~~~~d~IVvvGGDGTl~e----vvngL~~~~~~~~~~~~plgiIP~G-TgN~~A~sL 215 (302)
.++-+++++++||-++.. .++.|.... ...+++-+||+= |.+..|..+
T Consensus 101 ~~g~~Vv~l~~GDP~~ys~~~~l~~~l~~~~----~~~i~vevVPGISS~~aaaA~l 153 (253)
T PRK08284 101 PDGGTGAFLVWGDPSLYDSTLRILERVRARG----RVAFDYEVIPGITSVQALAARH 153 (253)
T ss_pred hCCCcEEEEeCCCcchhhHHHHHHHHHHhhc----cCCCcEEEECChhHHHHHHHHc
Confidence 356789999999988875 444443310 125688889984 445555555
No 471
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=31.79 E-value=1.8e+02 Score=24.88 Aligned_cols=84 Identities=14% Similarity=0.198 Sum_probs=49.8
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe---CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T---~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
++.||.-. ..-.... +.....|++-|++|++... ..++...+++++....++++||.. =|- ..-+-|+.
T Consensus 4 ~V~IIMGS----~SD~~~m-k~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAg--AGg-AAHLPGmv 75 (162)
T COG0041 4 KVGIIMGS----KSDWDTM-KKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAG--AGG-AAHLPGMV 75 (162)
T ss_pred eEEEEecC----cchHHHH-HHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEec--Ccc-hhhcchhh
Confidence 56677643 3334444 5777899999999986553 345556678888877777655533 222 22233333
Q ss_pred cCccccccCCccEEEecCCC
Q 022147 188 EREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GT 207 (302)
... ..+|+.-+|.=|
T Consensus 76 Aa~-----T~lPViGVPv~s 90 (162)
T COG0041 76 AAK-----TPLPVIGVPVQS 90 (162)
T ss_pred hhc-----CCCCeEeccCcc
Confidence 321 256766677765
No 472
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=31.79 E-value=3.5e+02 Score=23.67 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCcEEEEEeC--CcchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHH
Q 022147 131 DDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~--~~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL 186 (302)
..+...+++.|+.+.+..+. ....-.+..+.+...++|+||+.+.|-. ..+.++.+
T Consensus 18 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~ 76 (271)
T cd06314 18 AGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKA 76 (271)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHH
Confidence 56777788888877766433 2233335556666678999999987732 24555555
No 473
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=31.67 E-value=1.4e+02 Score=25.09 Aligned_cols=57 Identities=21% Similarity=0.222 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCcEEEEEe------CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEE
Q 022147 129 FLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T------~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgi 202 (302)
+.+.++..|++.|+++.-+-+ .+++-+..+++. +... ....||
T Consensus 12 lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~------------------------V~~g-------~~~~GI 60 (144)
T TIGR00689 12 LKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADK------------------------VVAG-------EVSLGI 60 (144)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHH------------------------HHcC-------CCceEE
Confidence 346889999999987754433 223223333332 2222 456789
Q ss_pred ecCCChhhHHHhhh
Q 022147 203 VPAGTGNGMIKSLL 216 (302)
Q Consensus 203 IP~GTgN~~A~sL~ 216 (302)
+=||||.+++-+.+
T Consensus 61 liCGtGiG~siaAN 74 (144)
T TIGR00689 61 LICGTGIGMSIAAN 74 (144)
T ss_pred EEcCCcHHHHHHHh
Confidence 99999999988775
No 474
>PRK00170 azoreductase; Reviewed
Probab=31.65 E-value=2.8e+02 Score=23.52 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=21.6
Q ss_pred CcEEEEEE-cCCCCCCchhhhHHHHHHHHHHhc--CCcEEEE
Q 022147 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQ 147 (302)
Q Consensus 109 ~~r~~viv-NP~sG~~~a~~~~~~~v~~~L~~a--g~~~~v~ 147 (302)
++|+++|. +|....+...++. +.+...++++ +.+++++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~-~~~~~~l~~~~~~~~v~~~ 41 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLG-DAFIEAYKEAHPDDEVTVR 41 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHH-HHHHHHHHHhCCCCeEEEE
Confidence 35665555 5655434444444 5666777776 6666544
No 475
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=31.60 E-value=60 Score=25.04 Aligned_cols=25 Identities=16% Similarity=0.402 Sum_probs=22.1
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+++.+.+.++++-+.|.++|+..+.
T Consensus 76 rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 76 RCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 6888989999999999999988764
No 476
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=31.54 E-value=1.8e+02 Score=22.27 Aligned_cols=81 Identities=9% Similarity=0.242 Sum_probs=45.7
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
.++++++..- |-+..++.+.++..+++.|+++++..+... + +.... .++|.|+ ++-+ +..-.+.+.+
T Consensus 3 ~~~ILl~C~~----G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~-~---~~~~~--~~~Dvil-l~pq--i~~~~~~i~~ 69 (95)
T TIGR00853 3 ETNILLLCAA----GMSTSLLVNKMNKAAEEYGVPVKIAAGSYG-A---AGEKL--DDADVVL-LAPQ--VAYMLPDLKK 69 (95)
T ss_pred ccEEEEECCC----chhHHHHHHHHHHHHHHCCCcEEEEEecHH-H---HHhhc--CCCCEEE-ECch--HHHHHHHHHH
Confidence 4677776653 344445668999999999999887665432 2 22222 4678555 3332 1222222222
Q ss_pred CccccccCCccEEEecC
Q 022147 189 REDWNDAIKVPLGVVPA 205 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~ 205 (302)
.- ....+|+..||.
T Consensus 70 ~~---~~~~ipv~~I~~ 83 (95)
T TIGR00853 70 ET---DKKGIPVEVING 83 (95)
T ss_pred Hh---hhcCCCEEEeCh
Confidence 10 113679988885
No 477
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=31.48 E-value=1.3e+02 Score=28.69 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=44.5
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC----------cchHHHHHHHhhcCCCceEEE-EcCCch
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVC-VSGDGI 178 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~----------~~~a~el~~~~~~~~~d~IVv-vGGDGT 178 (302)
....=||-|.++-. +.+.. +.....|+..|+++..-..-. ...+.++.+.+...+.+.|.+ .||+|+
T Consensus 10 gd~I~iIaPSs~~~-~~~~~-~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs 87 (313)
T COG1619 10 GDEIGIIAPSSGAT-ATDAL-KRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGS 87 (313)
T ss_pred CCEEEEEecCcccc-hHHHH-HHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCCh
Confidence 34566788888876 44444 577788999998765433211 123345555554455666554 599997
Q ss_pred HHHHHHHH
Q 022147 179 LVEVVNGL 186 (302)
Q Consensus 179 l~evvngL 186 (302)
++++..|
T Consensus 88 -~rlLp~l 94 (313)
T COG1619 88 -NRLLPYL 94 (313)
T ss_pred -hhhhhhc
Confidence 3444444
No 478
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.46 E-value=2.1e+02 Score=22.71 Aligned_cols=57 Identities=19% Similarity=0.117 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
.-+.-+|+.+|+++...-.. -...++++.+...++|.|++++-|++-.+.+..+++.
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~--vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~ 73 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLR--QTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIEL 73 (122)
T ss_pred HHHHHHHHHCCCEEEECCCC--CCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHH
Confidence 45677899999876544333 3344666666667899999999998877776665543
No 479
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=31.40 E-value=1.7e+02 Score=24.50 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
.++.++......|++++.+.+.+.++..+..++.. +++|+||+
T Consensus 29 i~~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~-~~~dgiII 71 (140)
T cd00466 29 IEALLRELAAELGVEVEFFQSNHEGELIDWIHEAR-DGADGIII 71 (140)
T ss_pred HHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhh-ccCcEEEE
Confidence 34566666667799999999999998888887764 35777774
No 480
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.29 E-value=4.5e+02 Score=24.72 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhhcc----C-CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC---cchHHHHHHHh
Q 022147 91 SKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVL 162 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~----~-r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~---~~~a~el~~~~ 162 (302)
.|+.+.+.+++.+... + +|+=..|.++ ...+...|.+.....+++.|++++.+.-.. .++..+..+++
T Consensus 9 iA~~i~~~i~~~v~~l~~~~g~~P~Laii~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l 84 (295)
T PRK14174 9 VSLDLKNELKTRVEAYRAKTGKVPGLTVIIVG----EDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDL 84 (295)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCeEEEEEeC----CChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4555555555554322 2 3433344444 445566787888899999999998765442 23344455555
Q ss_pred hc-CCCceEEEE
Q 022147 163 DL-SKYDGIVCV 173 (302)
Q Consensus 163 ~~-~~~d~IVvv 173 (302)
.. ...|+|++-
T Consensus 85 N~D~~V~GIlvq 96 (295)
T PRK14174 85 NNDPDVHGILVQ 96 (295)
T ss_pred hCCCCCCEEEEe
Confidence 43 245666653
No 481
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=31.26 E-value=1.1e+02 Score=26.69 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHH
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev 182 (302)
|...+...|++.|.++.+...+.. ... ++...++|+||+.||=|...+.
T Consensus 11 ft~nl~~~l~~~g~~v~v~~~~~~-~~~----~~~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 11 FTFNLVQFLGELGQELVVKRNDEV-TIS----DIENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred cHHHHHHHHHHCCCcEEEEeCCCC-CHH----HHhhCCCCEEEECCCCCChHhC
Confidence 345678889999998887765421 222 2233479999999999998774
No 482
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.20 E-value=4.6e+02 Score=24.78 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhhhcc---CCCcEEE-EEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHh
Q 022147 90 DSKRLWCEKLRDFIDSF---GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~---~r~~r~~-vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~ 162 (302)
+.++++.+.+++.+... +...++. |.++ ...+...|.+......++.|+.++.+.-. ..++..+..+++
T Consensus 11 ~iA~~i~~~lk~~i~~l~~~g~~P~LaiI~vg----~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~l 86 (301)
T PRK14194 11 AAAARVLAQVREDVRTLKAAGIEPALAVILVG----NDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAEL 86 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeC----CChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666666665432 2233444 4444 44555677777788899999998776553 233344445555
Q ss_pred hc-CCCceEEEE
Q 022147 163 DL-SKYDGIVCV 173 (302)
Q Consensus 163 ~~-~~~d~IVvv 173 (302)
.. ...|+|++-
T Consensus 87 N~D~~V~GIlvq 98 (301)
T PRK14194 87 NADPSVNGILLQ 98 (301)
T ss_pred cCCCCCCeEEEe
Confidence 32 245666653
No 483
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=31.13 E-value=2.9e+02 Score=25.06 Aligned_cols=92 Identities=11% Similarity=0.056 Sum_probs=52.8
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC-CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~-~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
..+++.+|-.+........... +-.+..++++|++....... ..+.+.+.++++...++++| +++.|-+-..+++.|
T Consensus 171 Ghr~I~~i~~~~~~~~~~~~R~-~gf~~a~~~~gi~~~~~~~~~~~~~~~~~~~~~l~~~~tAi-~~~~D~~A~g~~~~l 248 (311)
T TIGR02405 171 GHRHISFLGVDPSDKTTGLMRH-NAYLAYCESANLEPIYQTGQLSHESGYVLTDKVLKPETTAL-VCATDTLALGAAKYL 248 (311)
T ss_pred CCCcEEEEccCcccchhHHHHH-HHHHHHHHHcCCCceeeeCCCCHHHHHHHHHHHHhcCCCEE-EECCcHHHHHHHHHH
Confidence 4577888753322221222222 45677788888864332222 23445566666543456655 588899988999999
Q ss_pred hcCccccccCCccEEEecCCC
Q 022147 187 LEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GT 207 (302)
.+..- -.+.++-.+.
T Consensus 249 ~~~g~------~dvsvvgfd~ 263 (311)
T TIGR02405 249 QELDR------SDVQVSSVGN 263 (311)
T ss_pred HHcCC------CCeEEEeeCC
Confidence 87641 2455555544
No 484
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.10 E-value=4.5e+02 Score=24.63 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhhhcc---CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC---cchHHHHHHHhhc
Q 022147 91 SKRLWCEKLRDFIDSF---GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDL 164 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~---~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~---~~~a~el~~~~~~ 164 (302)
.++...+.+++.+... +...++.+|.= |...+...|.+......++.|+.++++.-.. .++..+..+++..
T Consensus 11 ia~~i~~~~~~~v~~l~~~g~~p~Laii~v---g~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 11 IAKDYRQGLQDQVEALKEKGFTPKLSVILV---GNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEEEEEe---CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4555555565554322 33335544432 4455666787888889999999988765432 2333444555532
Q ss_pred -CCCceEEEE---cCCchHHHHHHHHhcCccccccCCcc--------EEEecCCChhhHHHhhh
Q 022147 165 -SKYDGIVCV---SGDGILVEVVNGLLEREDWNDAIKVP--------LGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 165 -~~~d~IVvv---GGDGTl~evvngL~~~~~~~~~~~~p--------lgiIP~GTgN~~A~sL~ 216 (302)
...|+|++- -..=.-+++++.+.-..|-+-..... -+++|| |..+...-+-
T Consensus 88 d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~Pc-Tp~ai~~ll~ 150 (286)
T PRK14175 88 DDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDEQTFVPC-TPLGIMEILK 150 (286)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcCCCCCCCC-cHHHHHHHHH
Confidence 345676653 23444556666664443322111111 135676 6666665553
No 485
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=31.08 E-value=1.1e+02 Score=27.76 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=31.5
Q ss_pred HHHHhhcCCCceEEEEcCC-c-hHHHHHHHHhcCccccccCCccEEEecCCChh
Q 022147 158 IVKVLDLSKYDGIVCVSGD-G-ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGN 209 (302)
Q Consensus 158 l~~~~~~~~~d~IVvvGGD-G-Tl~evvngL~~~~~~~~~~~~plgiIP~GTgN 209 (302)
..+.+...+.|.|++.|-| + |+.+++..+.+. .++|+.+.|.+...
T Consensus 24 ~~~~~~~~gtDai~VGGS~~~~~~d~vv~~ik~~------~~lPvilfPg~~~~ 71 (230)
T PF01884_consen 24 ALEAACESGTDAIIVGGSDTGVTLDNVVALIKRV------TDLPVILFPGSPSQ 71 (230)
T ss_dssp HHHHHHCTT-SEEEEE-STHCHHHHHHHHHHHHH------SSS-EEEETSTCCG
T ss_pred HHHHHHhcCCCEEEECCCCCccchHHHHHHHHhc------CCCCEEEeCCChhh
Confidence 3344455788999999888 5 778888877654 38999999987633
No 486
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=31.06 E-value=1.4e+02 Score=25.93 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCcEEEEEeC------CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEE
Q 022147 129 FLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~------~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgi 202 (302)
+.+.+++.|+..|+++.-+-+. +++-|..+++. +... ....||
T Consensus 14 lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~------------------------V~~g-------~~d~GI 62 (171)
T PRK08622 14 EKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEA------------------------VASG-------EADLGV 62 (171)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHH------------------------HHcC-------CCcEEE
Confidence 3468899999999877655442 23333333333 2222 346688
Q ss_pred ecCCChhhHHHhhh
Q 022147 203 VPAGTGNGMIKSLL 216 (302)
Q Consensus 203 IP~GTgN~~A~sL~ 216 (302)
+=||||.+++-+.+
T Consensus 63 liCGTGiG~siaAN 76 (171)
T PRK08622 63 CICGTGVGISNAVN 76 (171)
T ss_pred EEcCCcHHHHHHHh
Confidence 88888888877764
No 487
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=30.95 E-value=2.5e+02 Score=27.05 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHHhhhh---------ccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHH
Q 022147 88 SEDSKRLWCEKLRDFID---------SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (302)
Q Consensus 88 ~~~~~~~w~~~l~~~l~---------~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~e 157 (302)
+.++...|...+...+. ..+.+.++..|.|.++|-||..- .-.+.-.|...|.++-++-.+..+.+..
T Consensus 73 t~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKTT~--a~nLA~~La~~G~rVLlID~DpQ~~ls~ 149 (387)
T TIGR03453 73 TLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFKGGSGKTTT--AAHLAQYLALRGYRVLAIDLDPQASLSA 149 (387)
T ss_pred CHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccCCCcCHHHH--HHHHHHHHHhcCCCEEEEecCCCCCHHH
Confidence 55666656555543211 12345689999999999999753 2467778888898888887777665443
No 488
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=30.89 E-value=50 Score=23.18 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=19.5
Q ss_pred eeEEecCCChHHHHHHHHHHHh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRD 101 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~ 101 (302)
+.+.|.+.++++...|.+.|+.
T Consensus 74 ~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 74 RSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHhc
Confidence 7888999999999999999864
No 489
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=30.59 E-value=2.9e+02 Score=27.21 Aligned_cols=49 Identities=27% Similarity=0.336 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhhcc-CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEE
Q 022147 92 KRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV 146 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~-~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v 146 (302)
.+.|.+.+.+.++.. -+.+.+-|++.+..|.+.. .+.++|+..|+++..
T Consensus 153 ~~~Y~~~l~~~~~~~~i~~~~~kivvd~~~G~~~~------~~~~il~~lg~~v~~ 202 (461)
T cd05800 153 KPDYLEALRSLVDLEAIREAGLKVVVDPMYGAGAG------YLEELLRGAGVDVEE 202 (461)
T ss_pred HHHHHHHHHHHhChhhhhcCCceEEEeCCCCCcHH------HHHHHHHHcCCCEEE
Confidence 355777777765321 1234678999987665432 356778888887643
No 490
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=30.50 E-value=2.9e+02 Score=24.78 Aligned_cols=50 Identities=12% Similarity=-0.049 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCcEEEEEeCCc--------------------------chHHHHHHHhhcCCCceEEEEcCCchHH
Q 022147 131 DDVKPLLEDANIQFTVQETTQQ--------------------------LHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~--------------------------~~a~el~~~~~~~~~d~IVvvGGDGTl~ 180 (302)
..+...|.+.|.++.++..... .....+.+.+...++|.|.+-+....+.
T Consensus 26 ~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~ 101 (335)
T cd03802 26 AALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAERALAAGDFDIVHNHSLHLPLP 101 (335)
T ss_pred HHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh
Confidence 4666667777777666543332 1112233344456788888777666544
No 491
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=30.45 E-value=4.3e+02 Score=24.17 Aligned_cols=78 Identities=15% Similarity=0.053 Sum_probs=49.0
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC----cchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~----~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
..+++.+|+..... + .... +.++..+++.|+.+...++-. ..+...+++++...+.|.||+.+.......++
T Consensus 159 ~~~~v~~l~~~~~~-g--~~~~-~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~~~~~~~~ 234 (348)
T cd06350 159 GWTWVGLVYSDDDY-G--RSGL-SDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGDEDDALRLF 234 (348)
T ss_pred CCeEEEEEEecchh-H--HHHH-HHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeCcHHHHHHH
Confidence 45678888753331 2 2223 577788888888765433322 23566677777666778888877666666777
Q ss_pred HHHhcC
Q 022147 184 NGLLER 189 (302)
Q Consensus 184 ngL~~~ 189 (302)
..+.+.
T Consensus 235 ~~a~~~ 240 (348)
T cd06350 235 CEAYKL 240 (348)
T ss_pred HHHHHh
Confidence 766554
No 492
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=30.38 E-value=78 Score=28.08 Aligned_cols=47 Identities=26% Similarity=0.278 Sum_probs=26.8
Q ss_pred chHHHHHHHhhcCCCceEEEEcCCchHHHHHH-HHhcCccccccCCccEEEecCCC
Q 022147 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN-GLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 153 ~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn-gL~~~~~~~~~~~~plgiIP~GT 207 (302)
+-|+++.+++...+ .+|+.||=+-+.|+++ +.... ....+|++|-.-
T Consensus 34 ~~a~~lg~~la~~g--~~V~tGG~~GiMea~~~gA~~~------gg~~vGi~p~~~ 81 (205)
T COG1611 34 ELARELGRELAKRG--LLVITGGGPGVMEAVARGALEA------GGLVVGILPGLL 81 (205)
T ss_pred HHHHHHHHHHHhCC--cEEEeCCchhhhhHHHHHHHHc------CCeEEEecCCCc
Confidence 34556777776544 5555555554555544 44433 267788888543
No 493
>PRK09004 FMN-binding protein MioC; Provisional
Probab=30.28 E-value=3.1e+02 Score=22.55 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=52.4
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHHH----
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVE---- 181 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~e---- 181 (302)
|+++.|++=..+| .++.+ .+.+...+.+.|++++++.. .+. .++ ..+|.+|++- |||=+-+
T Consensus 1 M~~i~I~ygS~tG--nae~~-A~~l~~~~~~~g~~~~~~~~---~~~----~~l--~~~~~li~~~sT~G~Ge~p~~~~~ 68 (146)
T PRK09004 1 MADITLISGSTLG--GAEYV-ADHLAEKLEEAGFSTETLHG---PLL----DDL--SASGLWLIVTSTHGAGDLPDNLQP 68 (146)
T ss_pred CCeEEEEEEcCch--HHHHH-HHHHHHHHHHcCCceEEecc---CCH----HHh--ccCCeEEEEECCCCCCCCChhHHH
Confidence 4578899876665 44443 46888889889988876532 221 233 3456555554 8995443
Q ss_pred HHHHHhcCccccccCCccEEEecCCChh
Q 022147 182 VVNGLLEREDWNDAIKVPLGVVPAGTGN 209 (302)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiIP~GTgN 209 (302)
....|.... .....++.+++-+|..+
T Consensus 69 f~~~L~~~~--~~l~g~~~aVfGlGds~ 94 (146)
T PRK09004 69 FFEELQEQK--PDLSQVRFAAIGIGSSE 94 (146)
T ss_pred HHHHHHhcC--CCCCCCEEEEEeecCCC
Confidence 333343321 11346788999888764
No 494
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=30.25 E-value=2.9e+02 Score=27.23 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=55.5
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhc-CCCceEEEEcCCchHHHHHHHHhcC
Q 022147 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDL-SKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~-~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
.||+-|..-.-.....+.+.+...|.++|+.-.++. +... +....+.. ...|.|...|+..+-..+.....++
T Consensus 150 ~VIlKps~~~p~~~~~~~~~~~~~l~~aGlP~gvv~~v~g~~----~~~~~L~~~~~v~~V~ftGs~~~g~~v~~~a~~~ 225 (465)
T cd07098 150 AIVVKVSEQVAWSSGFFLSIIRECLAACGHDPDLVQLVTCLP----ETAEALTSHPVIDHITFIGSPPVGKKVMAAAAES 225 (465)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHHhcCCCCCeEEEEECCH----HHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHhc
Confidence 455566444333322333455667777777533222 1211 23333332 3468888889888888887776543
Q ss_pred ccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhC
Q 022147 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRG 235 (302)
Q Consensus 190 ~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g 235 (302)
..|+ ++-+| ||+-+--+ ...+++.|+..|+.+
T Consensus 226 -------~~~~-~lelg-G~~~~iV~-----~dadl~~a~~~i~~~ 257 (465)
T cd07098 226 -------LTPV-VLELG-GKDPAIVL-----DDADLDQIASIIMRG 257 (465)
T ss_pred -------CCeE-EEECC-CCCeEEEC-----CCCCHHHHHHHHHHH
Confidence 2333 34455 55544333 123666777777654
No 495
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.24 E-value=2.4e+02 Score=22.23 Aligned_cols=44 Identities=11% Similarity=-0.024 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCc
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDG 177 (302)
..+...|+.+|+.+++... .......+.+...++..++++|.+-
T Consensus 45 ~~la~~LR~~gi~v~~d~~---~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 45 KEISEELRELGFSVKYDDS---GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred HHHHHHHHHCCCEEEEeCC---CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 4667778888988876543 2333444555667899999999764
No 496
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=30.17 E-value=4.5e+02 Score=24.55 Aligned_cols=78 Identities=12% Similarity=0.008 Sum_probs=44.6
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
.-+|+.++. +...-++. +.+.++..+++.|+++..... ....+....+.++...++|.|++.+..+..-.+++.
T Consensus 133 g~k~v~~l~-~d~~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~D~s~~v~~l~~~~pDav~~~~~~~~~~~~~~~ 208 (359)
T TIGR03407 133 GAKRFFLLG-SDYVFPRT---ANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAFKPDVVFNTLNGDSNVAFFKQ 208 (359)
T ss_pred CCceEEEec-CccHHHHH---HHHHHHHHHHHcCCEEEeeEEecCChHhHHHHHHHHHHhCCCEEEEeccCCCHHHHHHH
Confidence 346777764 32221222 235678889999987632222 223445556677766789988765433334456676
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+...
T Consensus 209 ~~~~ 212 (359)
T TIGR03407 209 LKNA 212 (359)
T ss_pred HHHc
Confidence 6554
No 497
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=30.03 E-value=1.3e+02 Score=28.51 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=42.5
Q ss_pred chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccC-------CccEEEecC--CChhhHHHhhhh
Q 022147 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAI-------KVPLGVVPA--GTGNGMIKSLLD 217 (302)
Q Consensus 153 ~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~-------~~plgiIP~--GTgN~~A~sL~~ 217 (302)
+...+..++.- .+||.+|+++-=|.+-..+--++.....+.+. +..|-++.+ |-+|.+|+.+-.
T Consensus 39 ~~~~~~~~~~f-~~~d~iIfI~A~GIaVR~IAP~l~dK~~DPaVvvvDe~G~~vIsLLsGH~GGAN~LA~~iA~ 111 (315)
T PRK05788 39 EGFADAFEEAF-GCYDALIFIMATGIAVRVIAPLLKDKWSDPAVVVVDEKGKFVISLLSGHHGGANELARDLAK 111 (315)
T ss_pred CCHHHHHHHHH-hcCCeEEEEEChHHHHHHhchhhhccCcCCCEEEEeCCCCEEEEcccCCcccHHHHHHHHHH
Confidence 34455555554 57999999999999998888888765433221 222333333 778999988753
No 498
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=30.02 E-value=2.3e+02 Score=26.83 Aligned_cols=65 Identities=23% Similarity=0.183 Sum_probs=42.5
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCc
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~ 190 (302)
.-.+|+|-.++.=..+.+| ..++.+-..+|+.-. +....-.| .+|..+..++.|. .+++.|+++.
T Consensus 209 ~~~LF~n~~g~~ltrq~~w-~~lk~~a~~Agi~~~-isPH~LRH--sFATHLL~~GADl-----------RvVQeLLGHa 273 (300)
T COG4974 209 TDALFPNQRGGGLTRQGFW-KRLKDYAERAGIDKK-ISPHTLRH--SFATHLLENGADL-----------RVVQELLGHA 273 (300)
T ss_pred CCeeeecCCCCCCCHHHHH-HHHHHHHHHhCCCCC-cCchhhHH--HHHHHHHhCCccH-----------HHHHHHhCcc
Confidence 3588899887765555555 799999999998722 11112222 3555565566665 7888888874
No 499
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=29.92 E-value=51 Score=25.66 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=0.0
Q ss_pred eeEEecCCChHHHHHHHHHHHhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l 103 (302)
+.+.|..+++++.+.|+++|++..
T Consensus 85 r~y~l~A~s~ee~~~Wi~~I~~~~ 108 (108)
T cd01266 85 RDLYLVAKNEEEMTLWVNCICKLC 108 (108)
T ss_pred ccEEEEECCHHHHHHHHHHHHhhC
No 500
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=29.85 E-value=3e+02 Score=25.16 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=0.0
Q ss_pred chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCc----cHHHH
Q 022147 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPC----KASNA 228 (302)
Q Consensus 153 ~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~----~~~~a 228 (302)
....++++.+..+.-...+...|.|+..+++-.++...- .+.+-++|.++++.....|.+ |.-. ++..+
T Consensus 91 ~t~~eli~~ak~~p~~~~~g~~g~g~~~hl~~~~l~~~~-----G~~~~~Vpy~G~~~~~~allg--G~vd~~~~~~~~~ 163 (274)
T PF03401_consen 91 KTLEELIEYAKANPGKLTFGSSGPGSSDHLAAALLAKAA-----GIKFTHVPYDGGAEALTALLG--GHVDAAFGSPGEA 163 (274)
T ss_dssp SSHHHHHHHHHCSCCC-EEEESSTTSHHHHHHHHHHHHH-----T---EEEE-SSHHHHHHHHHT--TSSSEEEEEHHHH
T ss_pred ccHHHHHHHHHhCCCCeEEEecCCCchHHHHHHHHHHHh-----CCceEEEEeCCccHHHHHHhC--CeeeEEeecHHHH
Q ss_pred HHHHHhCCeeee
Q 022147 229 ILAVIRGHKRLL 240 (302)
Q Consensus 229 ~~~I~~g~~~~l 240 (302)
...+..|+.+++
T Consensus 164 ~~~~~~G~~k~L 175 (274)
T PF03401_consen 164 LPYVEAGDLKPL 175 (274)
T ss_dssp HHHHHTTSEEEE
T ss_pred HHHHhCCCceEE
Done!