Query 022147
Match_columns 302
No_of_seqs 285 out of 1435
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 14:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 4.9E-36 1.7E-40 279.1 14.1 178 107-302 6-185 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 6.2E-33 2.1E-37 261.4 13.1 176 109-301 24-201 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 5.7E-32 2E-36 254.6 13.2 178 108-302 28-207 (332)
4 2an1_A Putative kinase; struct 99.3 7.2E-13 2.5E-17 121.9 4.4 114 109-238 5-122 (292)
5 1u0t_A Inorganic polyphosphate 99.2 1.6E-11 5.4E-16 114.0 8.4 115 109-239 4-135 (307)
6 2i2c_A Probable inorganic poly 99.1 1.9E-10 6.5E-15 104.9 9.6 96 110-238 1-96 (272)
7 1yt5_A Inorganic polyphosphate 99.1 4.1E-11 1.4E-15 108.6 3.5 99 110-238 1-99 (258)
8 3afo_A NADH kinase POS5; alpha 98.5 6.5E-08 2.2E-12 92.4 4.8 113 107-237 39-173 (388)
9 1z0s_A Probable inorganic poly 97.8 2.9E-05 9.8E-10 70.9 7.3 95 108-234 28-122 (278)
10 3pfn_A NAD kinase; structural 97.5 0.00025 8.5E-09 67.0 8.8 117 103-237 32-166 (365)
11 1o2d_A Alcohol dehydrogenase, 95.6 0.077 2.6E-06 49.8 11.0 102 99-206 32-149 (371)
12 1sg6_A Pentafunctional AROM po 95.2 0.092 3.2E-06 49.7 10.1 94 109-212 36-148 (393)
13 3ce9_A Glycerol dehydrogenase; 95.0 0.05 1.7E-06 50.6 7.5 86 110-208 35-123 (354)
14 1jq5_A Glycerol dehydrogenase; 94.6 0.038 1.3E-06 51.7 5.6 84 110-205 32-118 (370)
15 3bfj_A 1,3-propanediol oxidore 94.6 0.17 5.9E-06 47.5 10.1 93 109-205 33-142 (387)
16 3ox4_A Alcohol dehydrogenase 2 94.4 0.18 6.2E-06 47.5 9.7 102 99-206 22-139 (383)
17 3uhj_A Probable glycerol dehyd 94.3 0.052 1.8E-06 51.4 5.9 84 110-206 53-139 (387)
18 1vlj_A NADH-dependent butanol 94.2 0.14 4.8E-06 48.6 8.7 92 110-205 44-151 (407)
19 3okf_A 3-dehydroquinate syntha 94.1 0.2 6.9E-06 47.5 9.4 88 108-205 61-157 (390)
20 1rrm_A Lactaldehyde reductase; 93.1 0.11 3.8E-06 48.8 5.6 92 109-205 31-140 (386)
21 1oj7_A Hypothetical oxidoreduc 93.1 0.16 5.6E-06 48.1 6.9 93 110-208 51-164 (408)
22 3hl0_A Maleylacetate reductase 92.8 0.11 3.6E-06 48.6 5.1 83 109-206 34-120 (353)
23 1ta9_A Glycerol dehydrogenase; 92.7 0.11 3.7E-06 50.2 5.1 83 110-205 92-177 (450)
24 3jzd_A Iron-containing alcohol 92.3 0.1 3.6E-06 48.8 4.3 82 109-205 36-121 (358)
25 3qbe_A 3-dehydroquinate syntha 92.0 1.1 3.7E-05 42.1 10.9 85 110-205 44-137 (368)
26 1xah_A Sadhqs, 3-dehydroquinat 90.4 0.95 3.3E-05 41.9 8.7 85 110-206 32-125 (354)
27 1kq3_A Glycerol dehydrogenase; 90.3 0.09 3.1E-06 49.3 1.7 84 110-205 42-126 (376)
28 2gru_A 2-deoxy-scyllo-inosose 90.0 1 3.4E-05 42.1 8.6 87 108-205 33-128 (368)
29 3iv7_A Alcohol dehydrogenase I 89.6 0.14 4.9E-06 48.0 2.3 80 109-205 37-120 (364)
30 3clh_A 3-dehydroquinate syntha 88.0 0.49 1.7E-05 43.8 4.9 87 109-205 26-119 (343)
31 3f6r_A Flavodoxin; FMN binding 86.2 2.8 9.5E-05 33.0 7.8 88 109-206 1-94 (148)
32 3jy6_A Transcriptional regulat 86.1 6.9 0.00024 33.5 11.1 88 107-205 5-93 (276)
33 2fep_A Catabolite control prot 85.9 5.4 0.00018 34.6 10.4 78 107-187 14-92 (289)
34 3l49_A ABC sugar (ribose) tran 85.9 5.1 0.00017 34.5 10.1 92 107-207 3-96 (291)
35 4grd_A N5-CAIR mutase, phospho 85.8 8.7 0.0003 32.1 10.7 83 111-207 14-100 (173)
36 2fqx_A Membrane lipoprotein TM 85.8 10 0.00036 33.8 12.4 89 108-204 3-93 (318)
37 3l6u_A ABC-type sugar transpor 85.5 4.4 0.00015 35.0 9.5 90 107-205 6-97 (293)
38 3m9w_A D-xylose-binding peripl 85.5 7.5 0.00026 34.0 11.2 88 110-206 3-92 (313)
39 3o74_A Fructose transport syst 85.5 2.7 9.1E-05 35.9 8.0 88 109-205 2-90 (272)
40 2fvy_A D-galactose-binding per 85.4 6.7 0.00023 34.0 10.7 88 110-206 3-93 (309)
41 3gbv_A Putative LACI-family tr 85.0 4.8 0.00016 34.8 9.5 92 107-206 6-103 (304)
42 2iks_A DNA-binding transcripti 84.8 4.3 0.00015 35.2 9.1 89 107-204 18-107 (293)
43 1pfk_A Phosphofructokinase; tr 84.7 1.7 5.8E-05 40.0 6.5 52 154-213 82-133 (320)
44 3brq_A HTH-type transcriptiona 84.6 8.2 0.00028 33.1 10.8 88 107-204 17-108 (296)
45 3c3k_A Alanine racemase; struc 84.5 7.2 0.00025 33.6 10.5 86 107-203 6-92 (285)
46 3d8u_A PURR transcriptional re 84.5 4.4 0.00015 34.6 8.9 86 108-203 2-88 (275)
47 2rgy_A Transcriptional regulat 84.2 4.2 0.00014 35.3 8.8 88 107-204 6-97 (290)
48 3rf7_A Iron-containing alcohol 84.1 3.1 0.00011 38.9 8.3 88 109-205 53-159 (375)
49 3n7t_A Macrophage binding prot 83.6 5.5 0.00019 35.0 9.2 97 109-214 9-154 (247)
50 3qk7_A Transcriptional regulat 83.4 4.9 0.00017 35.0 8.9 89 107-204 4-95 (294)
51 3egc_A Putative ribose operon 83.4 4.1 0.00014 35.3 8.3 89 107-205 6-95 (291)
52 8abp_A L-arabinose-binding pro 83.3 6.7 0.00023 34.0 9.7 87 109-204 2-89 (306)
53 3h75_A Periplasmic sugar-bindi 83.0 11 0.00038 33.6 11.3 90 110-207 4-96 (350)
54 3dbi_A Sugar-binding transcrip 82.3 14 0.00049 32.6 11.8 89 107-204 59-150 (338)
55 1dbq_A Purine repressor; trans 82.1 11 0.00037 32.3 10.5 89 107-204 5-94 (289)
56 3ors_A N5-carboxyaminoimidazol 82.0 9.8 0.00034 31.5 9.4 84 111-208 5-92 (163)
57 2x7x_A Sensor protein; transfe 82.0 9.2 0.00031 33.8 10.3 89 107-205 4-95 (325)
58 1zxx_A 6-phosphofructokinase; 82.0 2 7E-05 39.5 5.9 53 153-213 80-132 (319)
59 3k9c_A Transcriptional regulat 81.9 10 0.00036 32.7 10.4 76 107-186 10-85 (289)
60 3tb6_A Arabinose metabolism tr 81.7 10 0.00035 32.5 10.3 86 110-204 16-106 (298)
61 2fn9_A Ribose ABC transporter, 81.3 8.1 0.00028 33.2 9.5 87 110-205 3-91 (290)
62 3clk_A Transcription regulator 81.0 5.9 0.0002 34.3 8.4 89 107-205 6-96 (290)
63 1ujn_A Dehydroquinate synthase 80.8 3.5 0.00012 38.0 7.2 84 109-205 28-118 (348)
64 3kjx_A Transcriptional regulat 80.7 16 0.00055 32.4 11.5 86 108-203 67-153 (344)
65 3lft_A Uncharacterized protein 80.6 14 0.00047 32.2 10.8 77 107-188 131-207 (295)
66 3o1i_D Periplasmic protein TOR 80.4 3.6 0.00012 35.7 6.8 87 107-203 3-93 (304)
67 1pyo_A Caspase-2; apoptosis, c 80.4 12 0.0004 31.0 9.5 64 101-164 24-94 (167)
68 3k4h_A Putative transcriptiona 80.3 5.5 0.00019 34.3 8.0 88 107-204 6-99 (292)
69 3g1w_A Sugar ABC transporter; 80.1 8.3 0.00028 33.4 9.2 90 108-206 3-95 (305)
70 3bil_A Probable LACI-family tr 80.1 9 0.00031 34.4 9.6 87 108-204 65-152 (348)
71 1o4v_A Phosphoribosylaminoimid 78.6 14 0.00047 31.1 9.4 73 126-208 26-102 (183)
72 2o20_A Catabolite control prot 78.5 12 0.0004 33.2 9.8 87 107-203 61-148 (332)
73 3lp6_A Phosphoribosylaminoimid 78.5 12 0.0004 31.3 8.8 84 111-208 9-96 (174)
74 3h5o_A Transcriptional regulat 78.5 16 0.00053 32.5 10.6 87 107-203 60-147 (339)
75 1xmp_A PURE, phosphoribosylami 78.0 12 0.00041 31.1 8.7 73 126-208 24-100 (170)
76 2hsg_A Glucose-resistance amyl 78.0 12 0.0004 33.1 9.6 88 107-204 58-146 (332)
77 3gv0_A Transcriptional regulat 77.8 12 0.0004 32.3 9.4 81 107-189 6-88 (288)
78 4a3s_A 6-phosphofructokinase; 77.7 3.5 0.00012 37.9 5.9 50 156-213 83-132 (319)
79 3e3m_A Transcriptional regulat 77.2 15 0.00052 32.8 10.2 87 107-203 68-155 (355)
80 1u11_A PURE (N5-carboxyaminoim 77.1 17 0.00057 30.6 9.4 84 111-208 23-110 (182)
81 2hig_A 6-phospho-1-fructokinas 76.9 2.5 8.4E-05 41.2 4.9 98 110-212 130-233 (487)
82 3oow_A Phosphoribosylaminoimid 76.8 19 0.00063 29.9 9.5 84 111-208 7-94 (166)
83 3kuu_A Phosphoribosylaminoimid 76.6 17 0.00057 30.4 9.2 83 111-207 14-100 (174)
84 2rjo_A Twin-arginine transloca 76.5 10 0.00035 33.5 8.8 90 107-205 3-96 (332)
85 3trh_A Phosphoribosylaminoimid 76.0 16 0.00054 30.4 8.9 83 111-207 8-94 (169)
86 2qh8_A Uncharacterized protein 75.8 16 0.00055 31.9 9.8 76 107-187 138-213 (302)
87 3lkb_A Probable branched-chain 75.6 32 0.0011 30.8 12.1 77 109-189 143-221 (392)
88 3opy_A 6-phosphofructo-1-kinas 75.1 3.6 0.00012 43.2 5.8 60 154-214 676-735 (989)
89 3snr_A Extracellular ligand-bi 75.1 20 0.00068 31.5 10.3 84 108-200 134-219 (362)
90 2q5c_A NTRC family transcripti 75.0 29 0.00098 29.1 10.7 66 109-186 94-159 (196)
91 3e61_A Putative transcriptiona 75.0 11 0.00038 32.1 8.3 89 107-207 6-96 (277)
92 1tjy_A Sugar transport protein 74.9 9.3 0.00032 33.7 8.0 87 109-204 3-92 (316)
93 2vk2_A YTFQ, ABC transporter p 74.6 12 0.00039 32.7 8.5 87 109-204 2-90 (306)
94 3lkv_A Uncharacterized conserv 74.5 16 0.00056 32.2 9.5 87 94-188 128-214 (302)
95 3brs_A Periplasmic binding pro 74.4 7.1 0.00024 33.5 6.9 90 108-205 4-98 (289)
96 4b4k_A N5-carboxyaminoimidazol 74.2 19 0.00066 30.2 9.1 82 112-207 25-110 (181)
97 1qpz_A PURA, protein (purine n 74.2 26 0.0009 30.9 10.9 88 107-203 56-144 (340)
98 4h1h_A LMO1638 protein; MCCF-l 74.0 3.6 0.00012 37.7 5.1 69 110-179 12-92 (327)
99 3rot_A ABC sugar transporter, 73.7 11 0.00038 32.7 8.1 87 110-205 4-94 (297)
100 2iuf_A Catalase; oxidoreductas 73.7 1.2 4.3E-05 45.0 2.0 89 110-208 530-643 (688)
101 3uug_A Multiple sugar-binding 73.6 19 0.00065 31.5 9.7 89 109-206 3-93 (330)
102 2lnd_A De novo designed protei 73.5 14 0.00046 27.1 6.9 59 99-163 40-99 (112)
103 3kkl_A Probable chaperone prot 73.4 12 0.0004 32.7 8.1 41 165-213 97-146 (244)
104 3bbl_A Regulatory protein of L 73.0 12 0.00041 32.2 8.1 57 131-188 28-85 (287)
105 3td9_A Branched chain amino ac 73.0 27 0.00094 30.9 10.8 79 108-189 148-227 (366)
106 1qtn_A Caspase-8; apoptosis, d 72.9 17 0.00058 29.8 8.4 69 103-171 16-101 (164)
107 3p45_A Caspase-6; protease, hu 72.6 14 0.00049 30.9 8.0 69 103-171 37-115 (179)
108 1vhq_A Enhancing lycopene bios 72.6 13 0.00043 31.9 8.0 97 108-215 5-150 (232)
109 3miz_A Putative transcriptiona 72.1 6.6 0.00023 34.1 6.2 71 107-178 11-82 (301)
110 2h54_A Caspase-1; allosteric s 72.0 11 0.00038 31.4 7.2 68 110-177 43-119 (178)
111 3opy_B 6-phosphofructo-1-kinas 71.8 5.7 0.0002 41.6 6.4 60 154-214 650-709 (941)
112 3hcw_A Maltose operon transcri 71.1 7.6 0.00026 33.7 6.4 90 107-205 5-99 (295)
113 1jx6_A LUXP protein; protein-l 70.7 54 0.0019 28.7 12.8 79 109-189 43-127 (342)
114 3rpe_A MDAB, modulator of drug 70.7 10 0.00034 32.7 6.8 65 106-173 22-90 (218)
115 3rg8_A Phosphoribosylaminoimid 70.6 28 0.00095 28.6 9.1 70 126-205 15-89 (159)
116 3e4c_A Caspase-1; zymogen, inf 70.5 21 0.00072 32.2 9.3 123 90-212 37-189 (302)
117 3fni_A Putative diflavin flavo 70.2 18 0.00063 29.0 8.1 87 109-204 4-94 (159)
118 3o8l_A 6-phosphofructokinase, 70.1 5.3 0.00018 41.0 5.6 60 154-214 477-536 (762)
119 3ej6_A Catalase-3; heme, hydro 70.1 4.1 0.00014 41.3 4.7 87 109-207 537-640 (688)
120 1jye_A Lactose operon represso 69.8 42 0.0014 29.8 11.2 67 107-175 59-127 (349)
121 1f4p_A Flavodoxin; electron tr 69.3 8.4 0.00029 30.0 5.7 85 110-208 1-95 (147)
122 2h3h_A Sugar ABC transporter, 69.1 21 0.0007 31.1 8.8 85 111-205 3-90 (313)
123 4evq_A Putative ABC transporte 69.1 35 0.0012 30.2 10.5 85 108-201 150-236 (375)
124 1oi4_A Hypothetical protein YH 68.9 3.7 0.00013 34.2 3.6 95 107-214 21-134 (193)
125 2hqb_A Transcriptional activat 68.8 22 0.00075 31.2 9.0 89 108-204 4-94 (296)
126 3kke_A LACI family transcripti 68.7 31 0.001 29.9 9.9 79 107-187 13-92 (303)
127 3hno_A Pyrophosphate-dependent 68.5 6.9 0.00024 37.3 5.7 60 152-213 90-149 (419)
128 3lop_A Substrate binding perip 68.2 57 0.0019 28.8 11.8 78 108-189 140-219 (364)
129 3o8o_B 6-phosphofructokinase s 68.0 5.3 0.00018 41.0 5.1 58 155-213 473-530 (766)
130 3o8o_A 6-phosphofructokinase s 67.9 7.1 0.00024 40.2 6.0 59 154-213 471-529 (787)
131 3o8l_A 6-phosphofructokinase, 67.7 6.7 0.00023 40.2 5.8 58 156-213 99-171 (762)
132 4eys_A MCCC family protein; MC 67.7 12 0.0004 34.6 7.0 74 111-186 6-93 (346)
133 1rw7_A YDR533CP; alpha-beta sa 67.6 15 0.0005 31.7 7.3 46 165-214 97-147 (243)
134 3ksm_A ABC-type sugar transpor 67.1 19 0.00064 30.4 7.9 87 111-206 2-93 (276)
135 2dko_A Caspase-3; low barrier 66.8 20 0.00069 28.8 7.5 58 107-164 13-77 (146)
136 3huu_A Transcription regulator 66.7 12 0.0004 32.6 6.6 90 107-205 20-114 (305)
137 1byk_A Protein (trehalose oper 66.5 25 0.00086 29.4 8.6 67 109-177 2-69 (255)
138 3eaf_A ABC transporter, substr 66.5 50 0.0017 29.6 11.1 79 108-189 140-222 (391)
139 2qip_A Protein of unknown func 66.4 37 0.0013 27.4 9.2 45 165-214 107-152 (165)
140 3d02_A Putative LACI-type tran 66.3 29 0.00099 29.8 9.1 87 109-204 4-93 (303)
141 1mkz_A Molybdenum cofactor bio 65.7 45 0.0015 27.2 9.7 67 108-177 9-80 (172)
142 2ab0_A YAJL; DJ-1/THIJ superfa 65.6 12 0.00041 31.3 6.2 93 109-213 2-115 (205)
143 3gyb_A Transcriptional regulat 65.5 17 0.00059 30.9 7.4 69 107-178 3-71 (280)
144 3o8o_A 6-phosphofructokinase s 65.4 6.8 0.00023 40.3 5.3 57 157-213 90-161 (787)
145 3l4e_A Uncharacterized peptida 65.4 20 0.00067 30.4 7.6 91 110-207 28-123 (206)
146 3l7n_A Putative uncharacterize 64.9 11 0.00036 32.5 5.9 87 110-216 1-102 (236)
147 3hut_A Putative branched-chain 64.4 73 0.0025 27.8 12.1 77 108-189 138-217 (358)
148 4e08_A DJ-1 beta; flavodoxin-l 63.9 12 0.00041 30.8 5.8 95 107-214 3-116 (190)
149 1zl0_A Hypothetical protein PA 63.7 10 0.00034 34.6 5.7 66 111-179 18-94 (311)
150 2dri_A D-ribose-binding protei 63.4 30 0.001 29.3 8.6 85 110-203 2-88 (271)
151 3ipc_A ABC transporter, substr 63.4 52 0.0018 28.8 10.4 78 108-189 137-216 (356)
152 3sg0_A Extracellular ligand-bi 63.3 64 0.0022 28.4 11.1 78 108-189 158-237 (386)
153 1usg_A Leucine-specific bindin 63.1 57 0.002 28.3 10.6 78 108-189 137-216 (346)
154 3o8o_B 6-phosphofructokinase s 63.0 7.9 0.00027 39.7 5.2 58 157-214 89-161 (766)
155 2cof_A Protein KIAA1914; PH do 62.7 8 0.00027 28.5 4.1 28 79-106 76-103 (107)
156 3loq_A Universal stress protei 62.4 75 0.0026 27.3 13.1 70 131-207 217-292 (294)
157 2f48_A Diphosphate--fructose-6 62.3 10 0.00034 37.5 5.7 103 109-213 104-211 (555)
158 3h11_B Caspase-8; cell death, 62.1 27 0.00094 30.9 8.2 113 103-215 10-153 (271)
159 2ioy_A Periplasmic sugar-bindi 62.0 41 0.0014 28.7 9.2 84 111-203 3-88 (283)
160 3opy_A 6-phosphofructo-1-kinas 61.7 6.7 0.00023 41.2 4.5 57 156-213 294-366 (989)
161 1y5e_A Molybdenum cofactor bio 61.7 50 0.0017 26.7 9.2 67 108-177 12-83 (169)
162 2rk3_A Protein DJ-1; parkinson 61.5 22 0.00076 29.2 7.1 96 109-214 3-115 (197)
163 4eyg_A Twin-arginine transloca 61.4 53 0.0018 28.9 10.1 78 108-189 138-217 (368)
164 3g85_A Transcriptional regulat 61.2 15 0.00052 31.4 6.2 89 107-204 9-98 (289)
165 2ql9_A Caspase-7; cysteine pro 60.6 24 0.00083 29.3 7.0 62 103-164 37-105 (173)
166 2h0a_A TTHA0807, transcription 60.6 14 0.00048 31.4 5.8 47 132-178 20-67 (276)
167 1nw9_B Caspase 9, apoptosis-re 60.6 39 0.0013 29.8 8.9 113 103-215 14-157 (277)
168 3hly_A Flavodoxin-like domain; 60.2 30 0.001 27.6 7.4 86 110-205 1-90 (161)
169 3od5_A Caspase-6; caspase doma 60.0 28 0.00096 30.9 7.9 113 103-215 14-149 (278)
170 2pju_A Propionate catabolism o 59.6 44 0.0015 28.7 8.8 83 109-215 106-188 (225)
171 4ehd_A Caspase-3; caspase, apo 58.9 26 0.00091 31.2 7.5 110 105-214 39-171 (277)
172 2ywx_A Phosphoribosylaminoimid 58.7 39 0.0013 27.7 7.7 65 131-206 16-83 (157)
173 3cs3_A Sugar-binding transcrip 58.7 32 0.0011 29.2 7.8 73 107-188 6-78 (277)
174 1czn_A Flavodoxin; FMN binding 58.2 26 0.00089 27.8 6.8 87 110-207 1-90 (169)
175 3s5p_A Ribose 5-phosphate isom 57.8 44 0.0015 27.6 8.0 71 109-216 21-97 (166)
176 2ejb_A Probable aromatic acid 57.8 49 0.0017 27.6 8.6 40 110-154 2-41 (189)
177 3jvd_A Transcriptional regulat 57.7 17 0.00058 32.3 6.1 67 107-175 62-128 (333)
178 2q9u_A A-type flavoprotein; fl 57.2 80 0.0028 28.8 10.9 88 108-205 255-349 (414)
179 3hs3_A Ribose operon repressor 57.2 18 0.0006 31.0 5.9 66 107-174 8-75 (277)
180 2lqo_A Putative glutaredoxin R 57.1 12 0.00041 27.5 4.1 32 131-162 18-49 (92)
181 1wjm_A Beta-spectrin III; PH d 57.0 10 0.00034 28.7 3.8 27 80-106 93-119 (123)
182 3opy_B 6-phosphofructo-1-kinas 56.6 6.9 0.00024 41.0 3.6 56 157-213 267-338 (941)
183 2amj_A Modulator of drug activ 56.6 34 0.0012 28.5 7.5 62 110-174 13-78 (204)
184 1mjh_A Protein (ATP-binding do 56.5 30 0.001 26.8 6.8 68 132-206 87-160 (162)
185 3l3b_A ES1 family protein; ssg 56.4 47 0.0016 28.7 8.6 96 110-214 24-167 (242)
186 2d9y_A Pleckstrin homology dom 55.8 9.8 0.00034 28.1 3.5 26 80-105 85-110 (117)
187 1gud_A ALBP, D-allose-binding 55.7 44 0.0015 28.5 8.4 67 131-204 21-91 (288)
188 1ykg_A SIR-FP, sulfite reducta 55.7 11 0.00037 30.4 4.0 88 108-206 8-102 (167)
189 1tq8_A Hypothetical protein RV 55.6 73 0.0025 25.0 9.4 69 131-206 84-159 (163)
190 1m72_A Caspase-1; caspase, cys 55.5 36 0.0012 30.1 7.7 111 103-213 25-157 (272)
191 1jmv_A USPA, universal stress 55.3 36 0.0012 25.6 6.9 69 131-206 67-139 (141)
192 2fp3_A Caspase NC; apoptosis, 55.0 39 0.0013 30.6 8.1 113 103-215 53-193 (316)
193 2pjk_A 178AA long hypothetical 54.9 65 0.0022 26.4 8.8 69 107-177 13-92 (178)
194 2h31_A Multifunctional protein 54.4 1.5E+02 0.005 28.1 14.7 82 110-205 266-352 (425)
195 1pea_A Amidase operon; gene re 54.3 75 0.0026 28.3 10.0 77 109-189 140-220 (385)
196 1t35_A Hypothetical protein YV 53.9 19 0.00065 30.2 5.4 46 154-206 21-67 (191)
197 1v5u_A SBF1, SET binding facto 53.8 10 0.00035 28.0 3.4 26 80-105 87-112 (117)
198 2j32_A Caspase-3; Pro-caspase3 53.8 41 0.0014 29.3 7.7 108 107-214 13-143 (250)
199 1u9c_A APC35852; structural ge 53.5 56 0.0019 27.2 8.4 75 132-214 33-138 (224)
200 3rcp_A Pleckstrin homology dom 53.2 13 0.00044 26.9 3.8 27 80-106 69-95 (103)
201 1e5d_A Rubredoxin\:oxygen oxid 53.0 1.2E+02 0.0042 27.2 11.3 90 91-187 235-330 (402)
202 2vzf_A NADH-dependent FMN redu 52.9 89 0.003 25.4 9.5 95 109-207 2-112 (197)
203 3sr3_A Microcin immunity prote 52.6 16 0.00056 33.4 5.1 70 109-179 12-93 (336)
204 3dfz_A SIRC, precorrin-2 dehyd 52.3 97 0.0033 26.5 9.8 100 108-216 30-158 (223)
205 3cxb_B Pleckstrin homology dom 52.3 11 0.00036 28.4 3.2 27 80-106 77-103 (112)
206 3ctp_A Periplasmic binding pro 52.1 59 0.002 28.4 8.7 69 107-178 58-127 (330)
207 2qu7_A Putative transcriptiona 51.7 33 0.0011 29.2 6.8 68 108-178 7-75 (288)
208 1mai_A Phospholipase C delta-1 51.7 13 0.00045 29.0 3.7 84 19-105 30-122 (131)
209 3mt0_A Uncharacterized protein 51.6 1E+02 0.0036 26.3 10.2 104 90-207 21-130 (290)
210 2iz6_A Molybdenum cofactor car 51.3 27 0.00094 28.9 5.9 45 155-206 34-79 (176)
211 1eaz_A Tandem PH domain contai 51.3 13 0.00043 27.9 3.5 26 80-105 87-112 (125)
212 1u5d_A SKAP55, SRC kinase-asso 51.2 11 0.00037 27.2 3.1 26 80-105 81-106 (108)
213 3l18_A Intracellular protease 50.9 14 0.00049 29.5 4.0 92 109-214 2-111 (168)
214 2nn3_C Caspase-1; cysteine pro 50.7 47 0.0016 30.1 7.8 108 106-213 56-185 (310)
215 1fgy_A GRP1; PH domain, signal 50.6 12 0.00042 27.9 3.4 27 80-106 96-122 (127)
216 2p0d_A RHO GTPase-activating p 50.4 6.9 0.00024 30.3 1.9 26 80-105 100-125 (129)
217 3sbx_A Putative uncharacterize 50.0 20 0.0007 30.1 4.9 46 154-206 32-78 (189)
218 3tla_A MCCF; serine protease, 49.8 20 0.00069 33.4 5.3 70 109-179 42-123 (371)
219 1v89_A Hypothetical protein KI 49.7 14 0.00049 27.1 3.6 27 79-105 87-113 (118)
220 3s3t_A Nucleotide-binding prot 49.6 33 0.0011 25.9 5.9 66 132-204 73-146 (146)
221 4e5s_A MCCFLIKE protein (BA_56 49.5 24 0.0008 32.3 5.6 70 109-179 11-92 (331)
222 1fy2_A Aspartyl dipeptidase; s 49.2 1.2E+02 0.0041 25.7 10.2 88 108-207 30-123 (229)
223 3lzd_A DPH2; diphthamide biosy 49.2 89 0.0031 29.1 9.6 69 101-176 256-324 (378)
224 2rlo_A Centaurin-gamma 1; spli 49.2 11 0.00038 28.8 2.9 25 80-104 100-124 (128)
225 3ph3_A Ribose-5-phosphate isom 49.0 37 0.0013 28.1 6.2 72 108-216 19-96 (169)
226 1obo_A Flavodoxin; electron tr 48.9 52 0.0018 25.9 7.2 86 110-207 2-90 (169)
227 1pls_A Pleckstrin homology dom 47.9 17 0.00057 26.8 3.7 26 80-105 77-102 (113)
228 3hcw_A Maltose operon transcri 47.9 83 0.0028 26.9 8.9 92 108-207 130-229 (295)
229 1wgq_A FYVE, rhogef and PH dom 47.9 19 0.00066 26.2 4.1 26 79-104 78-103 (109)
230 2i5f_A Pleckstrin; PH domain, 47.6 13 0.00045 27.0 3.0 24 80-103 85-108 (109)
231 4fe7_A Xylose operon regulator 47.6 65 0.0022 29.4 8.5 83 107-205 23-105 (412)
232 2da0_A 130-kDa phosphatidylino 47.2 17 0.00058 27.0 3.6 25 80-104 77-101 (114)
233 3sir_A Caspase; hydrolase; 2.6 46.7 36 0.0012 29.8 6.3 107 106-214 16-146 (259)
234 3hbm_A UDP-sugar hydrolase; PS 46.5 70 0.0024 28.3 8.2 28 166-205 225-252 (282)
235 2rsg_A Collagen type IV alpha- 46.4 7.5 0.00026 27.8 1.4 23 80-102 70-92 (94)
236 1fao_A Dual adaptor of phospho 46.2 18 0.00063 27.1 3.8 26 80-105 88-113 (126)
237 1ydh_A AT5G11950; structural g 46.0 25 0.00087 30.1 5.0 44 154-204 29-73 (216)
238 1byk_A Protein (trehalose oper 45.9 60 0.002 27.0 7.4 80 109-190 115-195 (255)
239 2vrn_A Protease I, DR1199; cys 45.7 25 0.00084 28.7 4.7 94 108-214 8-124 (190)
240 2d9x_A Oxysterol binding prote 45.6 16 0.00055 27.4 3.3 25 80-104 80-104 (120)
241 3op6_A Uncharacterized protein 45.5 22 0.00074 28.4 4.2 51 131-181 5-68 (152)
242 2lul_A Tyrosine-protein kinase 45.2 17 0.00058 29.4 3.6 27 80-106 97-123 (164)
243 2uyg_A 3-dehydroquinate dehydr 45.1 58 0.002 26.4 6.6 44 129-172 29-72 (149)
244 2dn6_A KIAA0640 protein; PH do 44.8 17 0.00059 26.6 3.4 25 80-104 79-103 (115)
245 3s99_A Basic membrane lipoprot 44.5 1E+02 0.0035 28.1 9.2 87 107-203 24-116 (356)
246 3cwq_A Para family chromosome 44.3 1.3E+02 0.0043 24.7 9.1 72 112-187 2-89 (209)
247 3aj4_A Pleckstrin homology dom 44.0 17 0.00059 26.6 3.2 25 79-103 86-110 (112)
248 2d9v_A Pleckstrin homology dom 43.7 22 0.00075 27.2 3.9 25 80-104 90-114 (130)
249 1v5p_A Pleckstrin homology dom 43.7 19 0.00065 27.8 3.5 25 80-104 96-120 (126)
250 1t5b_A Acyl carrier protein ph 43.4 67 0.0023 25.8 7.2 40 109-149 1-43 (201)
251 2b99_A Riboflavin synthase; lu 43.4 1.1E+02 0.0037 24.9 8.1 86 110-203 3-98 (156)
252 3qua_A Putative uncharacterize 43.2 27 0.00094 29.6 4.7 46 154-206 41-87 (199)
253 1n57_A Chaperone HSP31, protei 43.2 47 0.0016 29.5 6.5 38 164-208 143-189 (291)
254 2gm3_A Unknown protein; AT3G01 43.0 85 0.0029 24.5 7.6 68 132-206 91-164 (175)
255 2i0f_A 6,7-dimethyl-8-ribityll 42.9 65 0.0022 26.2 6.8 95 110-207 13-122 (157)
256 3h5t_A Transcriptional regulat 42.9 1.2E+02 0.004 26.9 9.3 87 108-204 67-158 (366)
257 2dum_A Hypothetical protein PH 42.8 64 0.0022 25.1 6.8 72 132-210 82-161 (170)
258 2vvp_A Ribose-5-phosphate isom 42.4 40 0.0014 27.7 5.4 71 110-217 4-81 (162)
259 3i45_A Twin-arginine transloca 42.2 1.6E+02 0.0053 26.1 10.1 86 99-189 133-222 (387)
260 3en0_A Cyanophycinase; serine 42.0 47 0.0016 29.8 6.3 63 110-178 57-122 (291)
261 3rfq_A Pterin-4-alpha-carbinol 42.0 47 0.0016 27.7 5.9 77 108-187 29-115 (185)
262 1x1g_A Pleckstrin 2; PH domain 41.9 17 0.00058 27.4 2.9 25 80-104 100-124 (129)
263 2is8_A Molybdopterin biosynthe 41.8 42 0.0014 27.1 5.5 56 131-186 24-87 (164)
264 2cod_A Centaurin-delta 1; ARF 41.8 18 0.00062 26.7 3.0 25 80-104 75-99 (115)
265 3ttv_A Catalase HPII; heme ori 41.8 19 0.00067 36.7 4.0 85 110-207 601-702 (753)
266 3pp2_A RHO GTPase-activating p 41.7 20 0.00067 27.4 3.3 25 80-104 99-123 (124)
267 2y7b_A Actin-binding protein a 41.7 27 0.00091 26.4 4.1 26 79-104 103-128 (134)
268 3iwt_A 178AA long hypothetical 41.7 53 0.0018 26.6 6.2 47 131-177 43-92 (178)
269 2vvr_A Ribose-5-phosphate isom 41.6 57 0.0019 26.4 6.1 69 113-217 4-78 (149)
270 1dro_A Beta-spectrin; cytoskel 41.3 20 0.0007 27.0 3.3 25 80-104 95-119 (122)
271 2gek_A Phosphatidylinositol ma 41.3 91 0.0031 27.5 8.3 73 107-180 18-121 (406)
272 3ot1_A 4-methyl-5(B-hydroxyeth 41.2 27 0.00092 29.2 4.4 95 107-213 7-120 (208)
273 2c4w_A 3-dehydroquinate dehydr 41.1 1.1E+02 0.0037 25.4 7.8 44 130-173 40-85 (176)
274 1btn_A Beta-spectrin; signal t 41.1 19 0.00063 26.0 2.9 22 80-101 84-105 (106)
275 1unq_A RAC-alpha serine/threon 40.9 26 0.00089 26.2 3.9 26 79-104 85-110 (125)
276 1x05_A Pleckstrin; PH domain, 40.8 19 0.00063 27.2 3.0 26 80-105 96-121 (129)
277 2bmv_A Flavodoxin; electron tr 40.5 74 0.0025 25.0 6.8 84 109-206 1-87 (164)
278 2yry_A Pleckstrin homology dom 40.4 21 0.00072 26.5 3.2 24 80-103 96-119 (122)
279 1v95_A Nuclear receptor coacti 40.3 76 0.0026 25.0 6.5 48 128-175 22-69 (130)
280 2a33_A Hypothetical protein; s 40.3 35 0.0012 29.2 5.0 45 155-206 34-79 (215)
281 2dhk_A TBC1 domain family memb 40.3 19 0.00066 27.0 3.0 26 79-104 79-104 (119)
282 3o21_A Glutamate receptor 3; p 40.2 1.2E+02 0.0041 27.3 9.0 76 108-188 129-207 (389)
283 4a6h_A Phosphatidylinositol 4, 40.0 21 0.00072 27.4 3.2 24 80-103 94-117 (120)
284 3i09_A Periplasmic branched-ch 39.6 1.5E+02 0.0051 26.1 9.4 78 108-189 139-218 (375)
285 1sqs_A Conserved hypothetical 39.6 80 0.0028 26.7 7.3 61 110-174 2-87 (242)
286 3kip_A 3-dehydroquinase, type 39.6 1.5E+02 0.0051 24.4 8.3 65 109-173 14-90 (167)
287 3pzy_A MOG; ssgcid, seattle st 39.3 54 0.0019 26.5 5.8 57 131-188 30-93 (164)
288 1q77_A Hypothetical protein AQ 38.5 50 0.0017 24.7 5.2 42 154-204 97-138 (138)
289 1f1j_A Caspase-7 protease; cas 38.3 59 0.002 29.3 6.4 112 103-214 62-196 (305)
290 2g2c_A Putative molybdenum cof 38.2 43 0.0015 27.1 5.0 47 131-177 28-80 (167)
291 3h5l_A Putative branched-chain 38.1 2.2E+02 0.0075 25.5 11.7 100 86-189 138-243 (419)
292 3r7f_A Aspartate carbamoyltran 37.8 1.2E+02 0.0042 27.2 8.4 122 80-215 39-165 (304)
293 3h11_A CAsp8 and FADD-like apo 37.7 1.8E+02 0.0061 25.6 9.4 96 105-207 38-153 (272)
294 2ppw_A Conserved domain protei 37.6 79 0.0027 27.2 6.7 36 110-147 4-39 (216)
295 3m3p_A Glutamine amido transfe 37.6 42 0.0014 29.2 5.2 59 109-179 3-61 (250)
296 3lwz_A 3-dehydroquinate dehydr 37.5 1.4E+02 0.0047 24.3 7.7 63 109-172 7-79 (153)
297 3g23_A Peptidase U61, LD-carbo 37.4 55 0.0019 29.0 5.9 72 111-186 4-88 (274)
298 2fex_A Conserved hypothetical 37.4 19 0.00064 29.5 2.7 93 109-214 1-110 (188)
299 3c5y_A Ribose/galactose isomer 36.9 40 0.0014 29.4 4.7 39 109-149 19-57 (231)
300 1wg7_A Dedicator of cytokinesi 36.8 26 0.00088 27.2 3.4 25 80-104 100-124 (150)
301 4a26_A Putative C-1-tetrahydro 36.8 2.3E+02 0.008 25.4 10.4 79 90-171 13-100 (300)
302 2dtc_A RAL guanine nucleotide 36.8 32 0.0011 26.9 3.8 27 80-106 88-114 (126)
303 2hpv_A FMN-dependent NADH-azor 36.5 1.2E+02 0.004 24.7 7.6 40 110-150 2-45 (208)
304 2qh8_A Uncharacterized protein 36.4 1E+02 0.0035 26.5 7.7 66 107-175 6-78 (302)
305 3c3k_A Alanine racemase; struc 36.3 1.9E+02 0.0066 24.2 9.6 91 108-206 123-220 (285)
306 1hyq_A MIND, cell division inh 36.1 1.9E+02 0.0065 24.1 10.3 37 111-149 3-39 (263)
307 4gi5_A Quinone reductase; prot 35.9 1E+02 0.0036 27.2 7.6 39 108-148 21-60 (280)
308 1v88_A Oxysterol binding prote 35.8 22 0.00076 27.6 2.8 25 80-104 100-124 (130)
309 2z08_A Universal stress protei 35.8 55 0.0019 24.4 5.1 58 140-204 73-137 (137)
310 2ys3_A UNC-112-related protein 35.4 71 0.0024 25.5 5.7 24 79-102 87-110 (137)
311 2wc1_A Flavodoxin; electron tr 35.4 16 0.00054 29.7 1.9 88 109-207 1-99 (182)
312 2coc_A FYVE, rhogef and PH dom 35.4 30 0.001 26.2 3.4 25 80-104 82-106 (112)
313 1i1q_B Anthranilate synthase c 35.2 62 0.0021 26.4 5.6 61 111-181 2-62 (192)
314 3cs3_A Sugar-binding transcrip 35.1 2E+02 0.0067 24.0 9.9 91 109-207 118-214 (277)
315 2dkp_A Pleckstrin homology dom 35.0 26 0.0009 26.2 3.0 25 80-104 95-119 (128)
316 1u5f_A SRC-associated adaptor 35.0 25 0.00087 27.3 3.0 25 80-104 95-119 (148)
317 3olq_A Universal stress protei 34.9 97 0.0033 26.8 7.2 70 133-209 78-154 (319)
318 3heb_A Response regulator rece 34.6 1.4E+02 0.0048 22.2 7.5 75 130-209 17-101 (152)
319 1upq_A PEPP1; PH domain, phosp 34.5 27 0.00093 25.9 3.0 25 80-104 85-109 (123)
320 2a9v_A GMP synthase; structura 34.4 57 0.002 27.3 5.4 58 108-181 12-70 (212)
321 1qdl_B Protein (anthranilate s 34.0 85 0.0029 25.6 6.3 56 112-180 4-59 (195)
322 3tqq_A Methionyl-tRNA formyltr 33.9 43 0.0015 30.3 4.8 67 110-179 27-93 (314)
323 2q5c_A NTRC family transcripti 33.8 59 0.002 27.1 5.3 69 132-215 19-87 (196)
324 1ag9_A Flavodoxin; electron tr 33.6 46 0.0016 26.7 4.5 60 110-181 1-63 (175)
325 1weh_A Conserved hypothetical 33.6 40 0.0014 27.6 4.1 45 154-205 21-65 (171)
326 4evm_A Thioredoxin family prot 33.5 1.3E+02 0.0045 21.5 9.6 90 81-178 26-116 (138)
327 1di6_A MOGA, molybdenum cofact 32.7 1.6E+02 0.0054 24.5 7.8 57 131-187 26-92 (195)
328 3rht_A (gatase1)-like protein; 32.7 30 0.001 30.5 3.4 55 108-173 3-57 (259)
329 1wl8_A GMP synthase [glutamine 32.6 90 0.0031 25.2 6.2 39 132-176 15-53 (189)
330 3uk7_A Class I glutamine amido 32.6 30 0.001 31.9 3.5 95 107-214 10-137 (396)
331 3lft_A Uncharacterized protein 32.3 1.2E+02 0.004 26.0 7.3 45 131-175 21-71 (295)
332 3erw_A Sporulation thiol-disul 32.1 1.5E+02 0.005 21.6 8.2 90 81-179 38-127 (145)
333 1fmt_A Methionyl-tRNA FMet for 32.1 41 0.0014 30.4 4.3 67 110-179 28-94 (314)
334 2fzv_A Putative arsenical resi 31.7 1.2E+02 0.0042 26.8 7.3 96 107-206 56-170 (279)
335 3eyt_A Uncharacterized protein 31.6 1.6E+02 0.0056 22.0 8.1 95 82-178 33-129 (158)
336 3he8_A Ribose-5-phosphate isom 31.6 70 0.0024 25.8 5.1 58 129-217 14-77 (149)
337 1e2b_A Enzyme IIB-cellobiose; 31.6 1E+02 0.0034 23.0 5.8 56 109-175 3-58 (106)
338 3q0i_A Methionyl-tRNA formyltr 31.6 57 0.0019 29.5 5.1 67 110-179 32-98 (318)
339 1uqr_A 3-dehydroquinate dehydr 31.5 2.1E+02 0.0071 23.2 8.7 44 129-173 31-74 (154)
340 3uw2_A Phosphoglucomutase/phos 31.4 1.1E+02 0.0036 29.4 7.3 47 92-147 178-224 (485)
341 2hna_A Protein MIOC, flavodoxi 31.4 69 0.0024 24.6 5.1 58 109-178 1-61 (147)
342 2zki_A 199AA long hypothetical 31.4 65 0.0022 26.0 5.1 74 109-189 4-95 (199)
343 2c92_A 6,7-dimethyl-8-ribityll 31.2 1.1E+02 0.0038 24.9 6.4 95 108-206 16-120 (160)
344 2a5l_A Trp repressor binding p 31.2 1.2E+02 0.0041 24.2 6.8 76 109-189 5-96 (200)
345 1rcu_A Conserved hypothetical 31.0 49 0.0017 27.9 4.3 45 154-205 46-90 (195)
346 2ark_A Flavodoxin; FMN, struct 30.8 93 0.0032 25.1 6.0 57 108-174 3-60 (188)
347 3r6w_A FMN-dependent NADH-azor 30.6 1.7E+02 0.0058 23.9 7.7 40 109-149 1-43 (212)
348 3efe_A THIJ/PFPI family protei 30.2 37 0.0013 28.4 3.5 93 109-214 5-121 (212)
349 4hjh_A Phosphomannomutase; str 30.2 1.6E+02 0.0054 28.0 8.3 80 91-177 158-249 (481)
350 2j59_M RHO-GTPase activating p 30.1 34 0.0012 27.2 3.1 25 80-104 87-111 (168)
351 1u5e_A SRC-associated adaptor 30.1 40 0.0014 28.4 3.6 26 80-105 184-209 (211)
352 4fo5_A Thioredoxin-like protei 30.0 1.7E+02 0.0058 21.7 7.3 91 81-179 36-126 (143)
353 4e16_A Precorrin-4 C(11)-methy 30.0 1.5E+02 0.0053 25.3 7.6 44 164-214 75-122 (253)
354 3pdk_A Phosphoglucosamine muta 29.9 1.3E+02 0.0044 28.6 7.6 50 90-147 175-224 (469)
355 1o1x_A Ribose-5-phosphate isom 29.7 78 0.0027 25.8 5.1 67 114-216 16-88 (155)
356 3lor_A Thiol-disulfide isomera 29.7 1.8E+02 0.0061 21.8 8.7 95 82-178 35-132 (160)
357 1rtt_A Conserved hypothetical 29.5 63 0.0021 26.2 4.7 92 109-206 6-117 (193)
358 2w2x_D 1-phosphatidylinositol- 29.5 29 0.00099 26.4 2.4 25 80-104 95-119 (124)
359 1btk_A Bruton'S tyrosine kinas 29.5 34 0.0012 27.8 3.0 26 80-105 108-133 (169)
360 3sgw_A Ribose 5-phosphate isom 29.4 88 0.003 26.2 5.5 21 197-217 89-109 (184)
361 2fz5_A Flavodoxin; alpha/beta 29.4 1.4E+02 0.0048 22.1 6.5 66 112-187 2-75 (137)
362 3kbq_A Protein TA0487; structu 29.4 97 0.0033 25.4 5.8 58 131-189 26-90 (172)
363 2ywj_A Glutamine amidotransfer 29.4 1.3E+02 0.0046 24.0 6.7 51 110-180 1-51 (186)
364 1ydg_A Trp repressor binding p 29.4 70 0.0024 26.2 5.0 41 108-151 5-45 (211)
365 2vdj_A Homoserine O-succinyltr 29.3 74 0.0025 28.6 5.4 64 108-176 34-109 (301)
366 1wi1_A Calcium-dependent activ 29.3 52 0.0018 25.8 3.9 26 81-106 87-112 (126)
367 4fle_A Esterase; structural ge 29.2 1.1E+02 0.0036 24.2 6.0 95 110-213 2-101 (202)
368 3n8k_A 3-dehydroquinate dehydr 29.0 1.6E+02 0.0054 24.3 6.9 62 110-172 29-100 (172)
369 3hh1_A Tetrapyrrole methylase 28.9 1.8E+02 0.006 21.7 6.9 41 157-205 71-116 (117)
370 3fw2_A Thiol-disulfide oxidore 28.8 1.8E+02 0.0061 21.7 7.1 88 83-179 39-129 (150)
371 1tvm_A PTS system, galactitol- 28.6 1.1E+02 0.0039 22.8 5.7 57 107-172 19-75 (113)
372 2iss_D Glutamine amidotransfer 28.5 1.5E+02 0.005 24.4 7.0 55 107-181 18-72 (208)
373 1s3a_A NADH-ubiquinone oxidore 28.3 51 0.0018 24.5 3.6 44 109-152 19-62 (102)
374 4dzz_A Plasmid partitioning pr 28.2 2.2E+02 0.0076 22.4 10.5 46 110-157 1-46 (206)
375 1wek_A Hypothetical protein TT 28.0 1.3E+02 0.0044 25.6 6.5 41 155-202 58-98 (217)
376 3hsy_A Glutamate receptor 2; l 27.9 1.2E+02 0.0043 26.9 6.9 76 108-188 120-201 (376)
377 3fro_A GLGA glycogen synthase; 27.9 94 0.0032 27.7 6.0 45 108-153 1-47 (439)
378 3u80_A 3-dehydroquinate dehydr 27.8 1.4E+02 0.005 24.1 6.3 42 130-172 35-76 (151)
379 2h0a_A TTHA0807, transcription 27.8 2.6E+02 0.0087 23.1 11.7 92 109-207 114-217 (276)
380 2ohh_A Type A flavoprotein FPR 27.6 3.3E+02 0.011 24.3 10.7 74 108-187 255-334 (404)
381 1t0i_A YLR011WP; FMN binding p 27.4 1.6E+02 0.0054 23.5 6.9 90 111-205 2-124 (191)
382 3td9_A Branched chain amino ac 27.4 3E+02 0.01 23.8 10.0 94 109-211 16-118 (366)
383 1sy7_A Catalase 1; heme oxidat 27.4 39 0.0013 34.3 3.5 93 110-215 535-645 (715)
384 2q62_A ARSH; alpha/beta, flavo 27.4 1.6E+02 0.0054 25.4 7.1 95 108-206 33-145 (247)
385 3fse_A Two-domain protein cont 27.1 44 0.0015 31.0 3.6 95 107-214 8-121 (365)
386 3ono_A Ribose/galactose isomer 27.1 1.1E+02 0.0036 26.3 5.7 35 113-148 6-40 (214)
387 3grc_A Sensor protein, kinase; 26.9 1.8E+02 0.0062 21.1 9.7 68 130-207 19-90 (140)
388 3ndc_A Precorrin-4 C(11)-methy 26.9 1.3E+02 0.0046 26.0 6.6 42 165-213 75-120 (264)
389 1uuy_A CNX1, molybdopterin bio 26.7 1.1E+02 0.0037 24.6 5.6 58 132-189 29-99 (167)
390 3s2u_A UDP-N-acetylglucosamine 26.7 1.9E+02 0.0064 25.9 7.8 29 167-206 253-281 (365)
391 2wte_A CSA3; antiviral protein 26.5 2.3E+02 0.0078 24.3 8.0 69 108-179 33-107 (244)
392 2obx_A DMRL synthase 1, 6,7-di 26.5 1.8E+02 0.0062 23.5 6.8 98 107-207 9-119 (157)
393 2pbq_A Molybdenum cofactor bio 26.3 1.3E+02 0.0044 24.5 6.1 57 131-187 28-94 (178)
394 3d54_D Phosphoribosylformylgly 26.1 37 0.0013 28.0 2.7 52 109-178 2-53 (213)
395 1gqo_A Dehydroquinase; dehydra 25.9 1.8E+02 0.006 23.3 6.5 42 130-172 31-72 (143)
396 3raz_A Thioredoxin-related pro 25.9 2.1E+02 0.0071 21.4 9.1 87 82-178 29-117 (151)
397 3b6i_A Flavoprotein WRBA; flav 25.8 1.3E+02 0.0044 24.0 6.0 77 109-189 1-93 (198)
398 3i3w_A Phosphoglucosamine muta 25.6 2E+02 0.0067 27.0 8.0 48 92-146 154-201 (443)
399 3hdc_A Thioredoxin family prot 25.5 1.9E+02 0.0066 21.8 6.8 83 81-178 45-127 (158)
400 2fep_A Catabolite control prot 25.4 3E+02 0.01 23.1 9.7 79 109-189 133-217 (289)
401 4a5o_A Bifunctional protein fo 25.4 3.6E+02 0.012 24.0 10.5 78 91-172 13-99 (286)
402 2yxb_A Coenzyme B12-dependent 25.2 2.6E+02 0.0087 22.2 8.6 49 131-181 36-84 (161)
403 1x1f_A Signal-transducing adap 25.2 48 0.0016 26.4 3.1 25 80-104 89-113 (149)
404 1gtz_A 3-dehydroquinate dehydr 25.0 1.8E+02 0.006 23.7 6.4 43 130-173 37-79 (156)
405 1jlj_A Gephyrin; globular alph 25.0 1.4E+02 0.0047 24.7 6.1 58 131-188 37-105 (189)
406 3okp_A GDP-mannose-dependent a 25.0 1.4E+02 0.0049 26.0 6.6 43 108-153 3-46 (394)
407 3f2v_A General stress protein 24.9 1.1E+02 0.0038 25.3 5.5 59 109-173 1-65 (192)
408 1yob_A Flavodoxin 2, flavodoxi 24.8 30 0.001 28.0 1.8 60 110-180 1-63 (179)
409 2iuy_A Avigt4, glycosyltransfe 24.8 1.3E+02 0.0044 26.0 6.2 47 131-177 37-95 (342)
410 3nq4_A 6,7-dimethyl-8-ribityll 24.7 1.8E+02 0.0061 23.6 6.5 95 108-205 11-119 (156)
411 3t6k_A Response regulator rece 24.7 2E+02 0.007 20.9 8.6 68 130-207 17-88 (136)
412 1xxa_A ARGR, arginine represso 24.4 63 0.0021 22.9 3.2 31 149-179 21-53 (78)
413 1w1g_A HPDK1, 3-phosphoinositi 24.3 2.2E+02 0.0077 22.9 6.9 24 80-104 116-139 (151)
414 3jvd_A Transcriptional regulat 24.3 3.3E+02 0.011 23.5 9.0 79 108-190 173-254 (333)
415 1q7r_A Predicted amidotransfer 24.2 1.6E+02 0.0056 24.3 6.5 52 109-180 23-74 (219)
416 1ka9_H Imidazole glycerol phos 24.2 1.8E+02 0.0062 23.6 6.7 32 132-174 17-48 (200)
417 1ycg_A Nitric oxide reductase; 24.1 3.8E+02 0.013 23.8 9.9 73 109-187 251-329 (398)
418 1s4d_A Uroporphyrin-III C-meth 24.0 2.1E+02 0.0071 24.9 7.4 42 164-212 90-135 (280)
419 1h05_A 3-dehydroquinate dehydr 24.0 1.6E+02 0.0053 23.7 5.8 43 129-172 32-74 (146)
420 2x9a_A Attachment protein G3P; 24.0 23 0.00078 24.5 0.7 12 168-179 39-50 (65)
421 1vpq_A Hypothetical protein TM 23.7 1.3E+02 0.0045 26.4 6.0 48 86-138 223-270 (273)
422 3h5i_A Response regulator/sens 23.7 2.2E+02 0.0074 20.8 7.4 67 130-208 18-89 (140)
423 1cbf_A Cobalt-precorrin-4 tran 23.6 2.8E+02 0.0097 24.0 8.2 43 165-214 92-138 (285)
424 1k66_A Phytochrome response re 23.5 2.1E+02 0.0073 20.7 7.4 73 130-207 19-102 (149)
425 3clk_A Transcription regulator 23.4 3.1E+02 0.01 22.9 8.3 78 109-189 125-207 (290)
426 2klx_A Glutaredoxin; thioredox 23.3 1.8E+02 0.0062 19.8 6.4 55 109-171 5-60 (89)
427 3l07_A Bifunctional protein fo 23.3 3.9E+02 0.013 23.7 10.2 79 91-172 12-98 (285)
428 3hs3_A Ribose operon repressor 23.1 3.2E+02 0.011 22.6 8.7 95 101-207 116-215 (277)
429 2nv0_A Glutamine amidotransfer 23.1 1.9E+02 0.0064 23.3 6.6 53 109-181 1-53 (196)
430 2ct6_A SH3 domain-binding glut 23.0 2.2E+02 0.0077 20.8 6.7 49 108-157 6-54 (111)
431 4dik_A Flavoprotein; TM0755, e 22.9 3.4E+02 0.012 25.1 9.0 61 108-173 264-326 (410)
432 2hsg_A Glucose-resistance amyl 22.8 3.2E+02 0.011 23.4 8.5 80 108-189 176-261 (332)
433 3bbl_A Regulatory protein of L 22.6 2.4E+02 0.0084 23.6 7.5 78 109-189 125-210 (287)
434 1edz_A 5,10-methylenetetrahydr 22.6 4.2E+02 0.014 23.8 10.1 80 90-172 12-97 (320)
435 2lpm_A Two-component response 22.6 1.1E+02 0.0039 23.2 4.7 62 131-205 22-87 (123)
436 4f11_A Gamma-aminobutyric acid 22.6 4E+02 0.014 23.7 9.4 77 108-189 153-229 (433)
437 2qu7_A Putative transcriptiona 22.4 1.1E+02 0.0038 25.8 5.1 78 109-189 122-209 (288)
438 3n0w_A ABC branched chain amin 22.4 2.7E+02 0.0092 24.4 8.0 78 108-189 141-220 (379)
439 3ic4_A Glutaredoxin (GRX-1); s 22.0 1.9E+02 0.0067 19.7 5.7 36 108-150 10-45 (92)
440 1tuo_A Putative phosphomannomu 21.9 1.5E+02 0.0052 27.9 6.4 80 92-177 157-252 (464)
441 2rov_A RHO-associated protein 21.9 74 0.0025 24.1 3.5 25 80-104 91-115 (117)
442 1ejb_A Lumazine synthase; anal 21.9 2.2E+02 0.0075 23.3 6.5 95 108-205 15-127 (168)
443 3loq_A Universal stress protei 21.9 2.6E+02 0.0088 23.7 7.5 70 131-207 89-164 (294)
444 3k7p_A Ribose 5-phosphate isom 21.9 1.1E+02 0.0037 25.6 4.6 68 113-216 25-100 (179)
445 2e0n_A Precorrin-2 C20-methylt 21.8 2.3E+02 0.008 24.1 7.2 41 165-212 95-139 (259)
446 1hqk_A 6,7-dimethyl-8-ribityll 21.8 2.7E+02 0.0091 22.4 6.9 96 108-206 11-119 (154)
447 2iz6_A Molybdenum cofactor car 21.7 52 0.0018 27.2 2.7 31 167-205 108-139 (176)
448 3saj_A Glutamate receptor 1; r 21.6 1.3E+02 0.0043 26.9 5.6 77 108-189 127-205 (384)
449 4hcj_A THIJ/PFPI domain protei 21.5 40 0.0014 27.6 1.9 74 133-214 27-117 (177)
450 3fdx_A Putative filament prote 21.5 2.4E+02 0.0083 20.6 6.5 66 131-204 69-143 (143)
451 1t1v_A SH3BGRL3, SH3 domain-bi 21.4 2.1E+02 0.0073 19.9 7.3 47 110-157 2-48 (93)
452 3ab8_A Putative uncharacterize 21.4 2.6E+02 0.0088 23.2 7.3 67 132-208 78-152 (268)
453 1jdp_A NPR-C, atrial natriuret 21.4 3.2E+02 0.011 24.5 8.5 77 109-188 154-233 (441)
454 2ywi_A Hypothetical conserved 21.3 2.9E+02 0.01 21.5 7.6 93 81-178 50-142 (196)
455 3dlo_A Universal stress protei 21.3 2.3E+02 0.0078 21.7 6.5 43 131-173 81-124 (155)
456 1d4a_A DT-diaphorase, quinone 21.3 3.4E+02 0.012 23.3 8.2 39 109-149 2-41 (273)
457 1c2y_A Protein (lumazine synth 21.2 1.9E+02 0.0064 23.4 5.9 97 108-207 12-120 (156)
458 5nul_A Flavodoxin; electron tr 21.1 1.4E+02 0.0047 22.4 5.0 78 113-205 2-87 (138)
459 1k68_A Phytochrome response re 21.1 2.3E+02 0.0079 20.2 7.8 73 130-207 15-95 (140)
460 2fcr_A Flavodoxin; electron tr 21.1 1.1E+02 0.0039 24.2 4.7 58 111-179 1-61 (173)
461 3ngx_A Bifunctional protein fo 21.0 4.3E+02 0.015 23.3 10.4 79 90-172 8-90 (276)
462 1dbq_A Purine repressor; trans 20.8 2.6E+02 0.0089 23.2 7.3 78 109-189 126-209 (289)
463 1p5d_X PMM, phosphomannomutase 20.6 2.1E+02 0.0072 26.9 7.1 46 92-146 156-201 (463)
464 3tfm_A Myosin X; split PH doma 20.5 70 0.0024 27.1 3.4 25 80-104 131-155 (228)
465 3nut_A Precorrin-3 methylase; 20.4 2.7E+02 0.0093 23.6 7.3 52 158-213 71-126 (251)
466 3fvw_A Putative NAD(P)H-depend 20.1 2.3E+02 0.0078 22.9 6.5 74 109-187 2-94 (192)
467 3fg9_A Protein of universal st 20.1 2.8E+02 0.0096 20.8 8.3 42 132-173 83-126 (156)
468 3h6g_A Glutamate receptor, ion 20.0 3E+02 0.01 24.3 7.8 77 108-189 137-214 (395)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=4.9e-36 Score=279.10 Aligned_cols=178 Identities=24% Similarity=0.320 Sum_probs=140.6
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
..++|++||+||.||++++.+.| +++++.|++++++++++.|++++|+.++++++. .++|.||++|||||+|||+|+|
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~-~~~d~vv~~GGDGTl~~v~~~l 83 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNL-TKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-SKVDLIIVFGGDGTVFECTNGL 83 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHH-HHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHT-TTCSEEEEEECHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCCchHHHH-HHHHHHHHHcCCeEEEEEccCcchHHHHHHHhh-cCCCEEEEEccchHHHHHHHHH
Confidence 45789999999999999998888 689999999999999999999999999999986 4899999999999999999999
Q ss_pred hcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhh
Q 022147 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI 266 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv 266 (302)
+.++ .++|||+||+||+|+||++| |+|.++.+|+..|++|+.+++|++.+++ ++|. +++++||+|++
T Consensus 84 ~~~~-----~~~~l~iiP~Gt~N~~ar~l----g~~~~~~~a~~~i~~g~~~~iDlg~v~~---~~F~-~~~~~G~da~v 150 (304)
T 3s40_A 84 APLE-----IRPTLAIIPGGTCNDFSRTL----GVPQNIAEAAKLITKEHVKPVDVAKANG---QHFL-NFWGIGLVSEV 150 (304)
T ss_dssp TTCS-----SCCEEEEEECSSCCHHHHHT----TCCSSHHHHHHHHTTCCEEEEEEEEETT---EEES-SEEEEC-----
T ss_pred hhCC-----CCCcEEEecCCcHHHHHHHc----CCCccHHHHHHHHHhCCeEEEEEEEECC---EEEE-EEEeehHHHHH
Confidence 9853 37999999999999999999 8898999999999999999999999963 6776 47999999999
Q ss_pred chhh--hhhcccCchhHHHHHHHHhhhhcccCcccccC
Q 022147 267 DIES--EKYRWMGSARIDFYVCSYSSLVFTYMHAQTHI 302 (302)
Q Consensus 267 ~~~s--ek~R~~G~~ry~~~~l~~l~~l~~y~~~~~~~ 302 (302)
..+. +.++++|+++|.+++++. +++|+|+.++|
T Consensus 151 ~~~~~~~~k~~~G~~~Y~~~~l~~---l~~~~~~~~~i 185 (304)
T 3s40_A 151 SNNIDAEEKAKLGKIGYYLSTIRT---VKNAETFPVKI 185 (304)
T ss_dssp -------------CHHHHTTTC---------CCEEEEE
T ss_pred HHhcCHHHhhcCCchHHHHHHHHH---HhhcCCceEEE
Confidence 8874 356789999998888665 55677776543
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=6.2e-33 Score=261.43 Aligned_cols=176 Identities=25% Similarity=0.296 Sum_probs=146.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
++|++||+||.||++++.+.+ +++.+.|+++++++++..|+.++|+.++++++...++|.||++|||||++||+|+|+.
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~-~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~ 102 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKREL-PDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAE 102 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHH-HHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEECCCCCCCchHHHH-HHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHHHh
Confidence 468999999999999988777 6899999999999999999999999999988877789999999999999999999975
Q ss_pred CccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhhch
Q 022147 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv~~ 268 (302)
.+ .++||++||+||+|+||++| |+|.++..|+..|++|+.+++|++.++. ++|. +++++||+|++..
T Consensus 103 ~~-----~~~pl~iIP~GT~N~lAr~L----g~~~~~~~al~~i~~g~~~~iD~g~v~~---r~fl-~~~~~G~~a~v~~ 169 (337)
T 2qv7_A 103 KP-----NRPKLGVIPMGTVNDFGRAL----HIPNDIMGALDVIIEGHSTKVDIGKMNN---RYFI-NLAAGGQLTQVSY 169 (337)
T ss_dssp CS-----SCCEEEEEECSSCCHHHHHT----TCCSSHHHHHHHHHHTCEEEEEEEEETT---EEES-SEEEEECBCC---
T ss_pred CC-----CCCcEEEecCCcHhHHHHHc----CCCCCHHHHHHHHHcCCcEEEEEEEECC---EEEE-EEeeecccHHHHH
Confidence 42 37999999999999999999 8888999999999999999999999953 6776 4799999999988
Q ss_pred hhh--hhcccCchhHHHHHHHHhhhhcccCccccc
Q 022147 269 ESE--KYRWMGSARIDFYVCSYSSLVFTYMHAQTH 301 (302)
Q Consensus 269 ~se--k~R~~G~~ry~~~~l~~l~~l~~y~~~~~~ 301 (302)
..+ .++++|+++|.+++++.+ ++++++.++
T Consensus 170 ~~~~~~k~~~G~~~Y~~~~l~~l---~~~~~~~~~ 201 (337)
T 2qv7_A 170 ETPSKLKSIVGPFAYYIKGFEML---PQMKAVDLR 201 (337)
T ss_dssp ----------CGGGSCCCTTTTG---GGBCCEEEE
T ss_pred HhhHHHHhccChHHHHHHHHHHH---HhCCCccEE
Confidence 754 467889999988886665 456666654
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=99.97 E-value=5.7e-32 Score=254.56 Aligned_cols=178 Identities=20% Similarity=0.197 Sum_probs=144.4
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
+++|++||+||.||++ +.+ +++.+.|+++++++.+..|++++++.++++++...++|.||++|||||++||+|+|.
T Consensus 28 ~~~~~~vi~Np~sg~~---~~~-~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~ 103 (332)
T 2bon_A 28 EFPASLLILNGKSTDN---LPL-REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALI 103 (332)
T ss_dssp --CCEEEEECSSSTTC---HHH-HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHH
T ss_pred hcceEEEEECCCCCCC---chH-HHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHh
Confidence 4678999999999987 346 578899999999999999999999999888776668999999999999999999999
Q ss_pred cCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhhc
Q 022147 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADID 267 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv~ 267 (302)
.+++ ..++|||+||+||+|+||+++ ++|.++..++..|++|+.+++|++.+++ +++|. +++++||+|++.
T Consensus 104 ~~~~---~~~~plgiiP~Gt~N~fa~~l----~i~~~~~~al~~i~~g~~~~iDlg~v~~--r~~fl-~~~~~G~da~v~ 173 (332)
T 2bon_A 104 QCEG---DDIPALGILPLGTANDFATSV----GIPEALDKALKLAIAGDAIAIDMAQVNK--QTCFI-NMATGGFGTRIT 173 (332)
T ss_dssp HCCS---SCCCEEEEEECSSSCHHHHHT----TCCSSHHHHHHHHHHSEEEEEEEEEETT--SCEES-SEEEEEEEEEC-
T ss_pred hccc---CCCCeEEEecCcCHHHHHHhc----CCCCCHHHHHHHHHcCCeEEeeEEEECC--ceEEE-EEEeECccHHHH
Confidence 6521 237899999999999999999 7888999999999999999999999963 23776 479999999998
Q ss_pred hh--hhhhcccCchhHHHHHHHHhhhhcccCcccccC
Q 022147 268 IE--SEKYRWMGSARIDFYVCSYSSLVFTYMHAQTHI 302 (302)
Q Consensus 268 ~~--sek~R~~G~~ry~~~~l~~l~~l~~y~~~~~~~ 302 (302)
.+ .+.++++|+++|.+.++ ..+++++|++++|
T Consensus 174 ~~~~~~~k~~~G~~~Y~~~~l---~~l~~~~~~~~~i 207 (332)
T 2bon_A 174 TETPEKLKAALGSVSYIIHGL---MRMDTLQPDRCEI 207 (332)
T ss_dssp ---------CCHHHHHHHHHT---SCEEEEECEEEEE
T ss_pred HHhhHHhHhcccHHHHHHHHH---HHHhhCCCeeEEE
Confidence 65 34567899999988764 4466677776653
No 4
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.31 E-value=7.2e-13 Score=121.86 Aligned_cols=114 Identities=18% Similarity=0.095 Sum_probs=76.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch----HHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH----AKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~----a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
++|+++|+||.++ .+.+.+ +.+...|+++|+++.+..+..... ......+....++|.||++|||||++++++
T Consensus 5 mkki~ii~np~~~--~~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l~a~~ 81 (292)
T 2an1_A 5 FKCIGIVGHPRHP--TALTTH-EMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAAR 81 (292)
T ss_dssp CCEEEEECC---------CHH-HHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHHHHH
T ss_pred CcEEEEEEcCCCH--HHHHHH-HHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcHHHHHHHH
Confidence 6899999999864 344444 688899999999877655431110 000001111236899999999999999999
Q ss_pred HHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCee
Q 022147 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~ 238 (302)
++... ++|+.-||+||.|.|+ .+ + |.++.+++..|.+|+.+
T Consensus 82 ~~~~~-------~~P~lGI~~Gt~gfla-~~----~-~~~~~~al~~i~~g~~~ 122 (292)
T 2an1_A 82 TLARY-------DINVIGINRGNLGFLT-DL----D-PDNALQQLSDVLEGRYI 122 (292)
T ss_dssp HHTTS-------SCEEEEBCSSSCCSSC-CB----C-TTSHHHHHHHHHTTCEE
T ss_pred HhhcC-------CCCEEEEECCCcccCC-cC----C-HHHHHHHHHHHHcCCCE
Confidence 99875 4564445899966665 45 5 77899999999999763
No 5
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=99.23 E-value=1.6e-11 Score=114.01 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=78.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch----------------HHHHHHH-hhcCCCceEE
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH----------------AKEIVKV-LDLSKYDGIV 171 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~----------------a~el~~~-~~~~~~d~IV 171 (302)
|+++++|+||.++. +.+.+ +++...|+++|+++.+..+..... ...+.+. ....++|.||
T Consensus 4 m~ki~iI~n~~~~~--~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi 80 (307)
T 1u0t_A 4 HRSVLLVVHTGRDE--ATETA-RRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVL 80 (307)
T ss_dssp -CEEEEEESSSGGG--GSHHH-HHHHHHHHTTTCEEEEEC-----------------------------------CCCEE
T ss_pred CCEEEEEEeCCCHH--HHHHH-HHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEE
Confidence 68999999998853 34444 688999999999887766654321 1111111 2335789999
Q ss_pred EEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeee
Q 022147 172 CVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRL 239 (302)
Q Consensus 172 vvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~ 239 (302)
++|||||++++++.+... .+|+.-||+||.|.++. + .|.++..++..+++|+.+.
T Consensus 81 ~~GGDGT~l~a~~~~~~~-------~~pvlgi~~G~~gfl~~-~-----~~~~~~~~~~~i~~g~~~~ 135 (307)
T 1u0t_A 81 VLGGDGTFLRAAELARNA-------SIPVLGVNLGRIGFLAE-A-----EAEAIDAVLEHVVAQDYRV 135 (307)
T ss_dssp EEECHHHHHHHHHHHHHH-------TCCEEEEECSSCCSSCS-E-----EGGGHHHHHHHHHHTCCEE
T ss_pred EEeCCHHHHHHHHHhccC-------CCCEEEEeCCCCccCcc-c-----CHHHHHHHHHHHHcCCcEE
Confidence 999999999999999865 45655568999987774 4 2568889999999997543
No 6
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=99.11 E-value=1.9e-10 Score=104.93 Aligned_cols=96 Identities=11% Similarity=0.195 Sum_probs=74.4
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
+|+.+|+||. .++.+.+ +++...|++.|++++ ..++|.||++|||||++++++.+...
T Consensus 1 mki~ii~n~~---~~~~~~~-~~l~~~l~~~g~~v~------------------~~~~D~vv~lGGDGT~l~aa~~~~~~ 58 (272)
T 2i2c_A 1 MKYMITSKGD---EKSDLLR-LNMIAGFGEYDMEYD------------------DVEPEIVISIGGDGTFLSAFHQYEER 58 (272)
T ss_dssp CEEEEEECCS---HHHHHHH-HHHHHHHTTSSCEEC------------------SSSCSEEEEEESHHHHHHHHHHTGGG
T ss_pred CEEEEEECCC---HHHHHHH-HHHHHHHHHCCCEeC------------------CCCCCEEEEEcCcHHHHHHHHHHhhc
Confidence 4799999973 3555554 688889999988761 25789999999999999999999764
Q ss_pred ccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCee
Q 022147 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (302)
Q Consensus 190 ~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~ 238 (302)
. .++|+.-||+|| |+|+..+ . |.++.+++..+++|+.+
T Consensus 59 ~-----~~~PilGIn~G~-lgfl~~~----~-~~~~~~~l~~l~~g~~~ 96 (272)
T 2i2c_A 59 L-----DEIAFIGIHTGH-LGFYADW----R-PAEADKLVKLLAKGEYQ 96 (272)
T ss_dssp T-----TTCEEEEEESSS-CCSSCCB----C-GGGHHHHHHHHHTTCCE
T ss_pred C-----CCCCEEEEeCCC-CCcCCcC----C-HHHHHHHHHHHHcCCCE
Confidence 1 156744459999 6788777 4 77889999999999643
No 7
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=99.08 E-value=4.1e-11 Score=108.57 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=71.2
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
+|+++|+||.+|++ +.+.. +.+...|+ ++++ . +. + +....++|.||++|||||++++++.+..
T Consensus 1 mki~ii~Np~~~~~-~~~~~-~~i~~~l~--~~~~--~-~~---~------~~~~~~~D~vv~~GGDGTll~~a~~~~~- 63 (258)
T 1yt5_A 1 MKIAILYREEREKE-GEFLK-EKISKEHE--VIEF--G-EA---N------APGRVTADLIVVVGGDGTVLKAAKKAAD- 63 (258)
T ss_dssp CEEEEEECGGGHHH-HHHHH-HHHTTTSE--EEEE--E-ES---S------SCSCBCCSEEEEEECHHHHHHHHTTBCT-
T ss_pred CEEEEEEeCCCchH-HHHHH-HHHHHHhc--CCce--e-cc---c------ccccCCCCEEEEEeCcHHHHHHHHHhCC-
Confidence 47999999999986 66544 45665555 3332 2 21 2 2223578999999999999999999875
Q ss_pred ccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCee
Q 022147 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (302)
Q Consensus 190 ~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~ 238 (302)
. .+.+|| ++||.|.++ .+ . |.++.+++..+.+|+.+
T Consensus 64 ~------~PilGI-n~G~~Gfl~-~~----~-~~~~~~al~~i~~g~~~ 99 (258)
T 1yt5_A 64 G------TPMVGF-KAGRLGFLT-SY----T-LDEIDRFLEDLRNWNFR 99 (258)
T ss_dssp T------CEEEEE-ESSSCCSSC-CB----C-GGGHHHHHHHHHTTCCE
T ss_pred C------CCEEEE-ECCCCCccC-cC----C-HHHHHHHHHHHHcCCce
Confidence 2 333665 699995554 56 4 77899999999999764
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=98.50 E-value=6.5e-08 Score=92.42 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=76.0
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHH---------------------HhhcC
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK---------------------VLDLS 165 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~---------------------~~~~~ 165 (302)
..+++++||.||. +..+.+.. .++...|...+..++++..+...+ ++.. +....
T Consensus 39 ~~~k~V~II~n~~--~~~~~~~~-~~l~~~L~~~~~gi~V~ve~~~a~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (388)
T 3afo_A 39 NPLQNVYITKKPW--TPSTREAM-VEFITHLHESYPEVNVIVQPDVAE--EISQDFKSPLENDPNRPHILYTGPEQDIVN 113 (388)
T ss_dssp SCCCEEEEEECTT--CHHHHHHH-HHHHHHHHHHCTTCEEECCHHHHH--HHHTTCCSCGGGCTTSCEEEEECCHHHHHH
T ss_pred CCCcEEEEEEeCC--CHHHHHHH-HHHHHHHHHhCCCeEEEEeCchhh--hhhhhccccccccccccccccccchhhccc
Confidence 4578999999996 44555554 678888888833344444332222 1110 01113
Q ss_pred CCceEEEEcCCchHHHHHHHHhcCccccccCCc-cEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKV-PLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 166 ~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~-plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
++|.||++|||||+..+++.+... .+ |+.-|++||- +|...+ . +.+...++..+++|+.
T Consensus 114 ~~DlVIvlGGDGTlL~aa~~~~~~-------~vpPiLGIN~G~l-GFLt~~----~-~~~~~~al~~il~g~~ 173 (388)
T 3afo_A 114 RTDLLVTLGGDGTILHGVSMFGNT-------QVPPVLAFALGTL-GFLSPF----D-FKEHKKVFQEVISSRA 173 (388)
T ss_dssp HCSEEEEEESHHHHHHHHHTTTTS-------CCCCEEEEECSSC-CSSCCE----E-GGGHHHHHHHHHTTCC
T ss_pred CCCEEEEEeCcHHHHHHHHHhccc-------CCCeEEEEECCCc-ccCCcC----C-hHHHHHHHHHHhcCCc
Confidence 579999999999999999988765 44 6666799997 444445 2 4578889999999864
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=97.84 E-value=2.9e-05 Score=70.89 Aligned_cols=95 Identities=17% Similarity=0.267 Sum_probs=64.4
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
+.+|+.++.||..- .+++...|+++|+++.+.. .... .....|.||++|||||+-.++..+.
T Consensus 28 ~~mki~iv~~~~~~--------~~~l~~~L~~~g~~v~~~~--~~~~--------~~~~~DlvIvlGGDGT~L~aa~~~~ 89 (278)
T 1z0s_A 28 GGMRAAVVYKTDGH--------VKRIEEALKRLEVEVELFN--QPSE--------ELENFDFIVSVGGDGTILRILQKLK 89 (278)
T ss_dssp --CEEEEEESSSTT--------HHHHHHHHHHTTCEEEEES--SCCG--------GGGGSSEEEEEECHHHHHHHHTTCS
T ss_pred cceEEEEEeCCcHH--------HHHHHHHHHHCCCEEEEcc--cccc--------ccCCCCEEEEECCCHHHHHHHHHhC
Confidence 34679999998543 2577889999998775432 2111 1136899999999999988887653
Q ss_pred cCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHh
Q 022147 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIR 234 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~ 234 (302)
. . +|+.-|+.|+-+-++ .+ .|.+..+++..+++
T Consensus 90 ~-------~-~PilGIN~G~lGFLt-~~-----~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 90 R-------C-PPIFGINTGRVGLLT-HA-----SPENFEVELKKAVE 122 (278)
T ss_dssp S-------C-CCEEEEECSSSCTTC-CB-----BTTBCHHHHHHHHH
T ss_pred C-------C-CcEEEECCCCCcccc-cc-----CHHHHHHHHHHHHh
Confidence 2 2 798889999744444 33 24466777777764
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=97.52 E-value=0.00025 Score=67.02 Aligned_cols=117 Identities=18% Similarity=0.248 Sum_probs=75.1
Q ss_pred hhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHH---------Hh-------h--c
Q 022147 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK---------VL-------D--L 164 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~---------~~-------~--~ 164 (302)
|.+...+++++||--|.. ......+ .++...|...|+.+-+.. +..++ ..+.. .. + .
T Consensus 32 l~w~~~~k~I~iv~K~~~--~~~~~~~-~~l~~~L~~~~~~V~ve~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (365)
T 3pfn_A 32 LTWNKSPKSVLVIKKMRD--ASLLQPF-KELCTHLMEENMIVYVEK-KVLED-PAIASDESFGAVKKKFCTFREDYDDIS 106 (365)
T ss_dssp EEESSCCCEEEEEECTTC--GGGHHHH-HHHHHHHHHTSCEEEEEH-HHHHS-HHHHHCSTTHHHHHHCEEECTTTCCCT
T ss_pred cccCCCCCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEeh-HHhhh-hccccccccccccccccccccChhhcc
Confidence 444567899999988744 3444444 578888888886553321 11111 11110 10 0 1
Q ss_pred CCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCe
Q 022147 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (302)
Q Consensus 165 ~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~ 237 (302)
...|.||++|||||+-.++..+... .+|+--|..|+ =+|-..+ .+.+..+++..+++|..
T Consensus 107 ~~~DlvI~lGGDGT~L~aa~~~~~~-------~~PvlGiN~G~-LGFLt~~-----~~~~~~~~l~~vl~g~~ 166 (365)
T 3pfn_A 107 NQIDFIICLGGDGTLLYASSLFQGS-------VPPVMAFHLGS-LGFLTPF-----SFENFQSQVTQVIEGNA 166 (365)
T ss_dssp TTCSEEEEESSTTHHHHHHHHCSSS-------CCCEEEEESSS-CTTTCCE-----ESTTHHHHHHHHHHSCC
T ss_pred cCCCEEEEEcChHHHHHHHHHhccC-------CCCEEEEcCCC-Cccceee-----cHHHHHHHHHHHHcCCC
Confidence 4689999999999999999877554 67888888886 2333333 24577889999999854
No 11
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=95.61 E-value=0.077 Score=49.77 Aligned_cols=102 Identities=21% Similarity=0.302 Sum_probs=65.4
Q ss_pred HHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEc
Q 022147 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 99 l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvG 174 (302)
+.+.+...+ +|++||..+.+-+..+ .+ +++...|+.+|+++.++.- .+.+...++++.+...+.|.||.+|
T Consensus 32 l~~~l~~~g--~~~liVtd~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 106 (371)
T 1o2d_A 32 RGNIIDLLG--KRALVVTGKSSSKKNG--SL-DDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLG 106 (371)
T ss_dssp HGGGGGGTC--SEEEEEEESSGGGTSS--HH-HHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHcC--CEEEEEECchHHhhcc--HH-HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 444554433 7999999875433222 23 6788899999988765531 1334455666666667899999999
Q ss_pred CCchHHHHHHHHhcCc---c---cc------ccCCccEEEecCC
Q 022147 175 GDGILVEVVNGLLERE---D---WN------DAIKVPLGVVPAG 206 (302)
Q Consensus 175 GDGTl~evvngL~~~~---~---~~------~~~~~plgiIP~G 206 (302)
| |++.++...+...- + ++ ....+|+..||.=
T Consensus 107 G-Gsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 149 (371)
T 1o2d_A 107 G-GSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTT 149 (371)
T ss_dssp S-HHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECS
T ss_pred C-hHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCC
Confidence 8 77777777664320 0 00 0147899999973
No 12
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=95.20 E-value=0.092 Score=49.68 Aligned_cols=94 Identities=9% Similarity=0.081 Sum_probs=63.1
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhc------CCcEEEEEe-C-----CcchHHHHHHHhhcCC--C---ceEE
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA------NIQFTVQET-T-----QQLHAKEIVKVLDLSK--Y---DGIV 171 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~a------g~~~~v~~T-~-----~~~~a~el~~~~~~~~--~---d~IV 171 (302)
.+|++||.++.. .. .+.+.+...|+.+ ++++....- . +.+...++.+.+...+ . |.||
T Consensus 36 ~~k~liVtd~~v----~~-~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iI 110 (393)
T 1sg6_A 36 STTYVLVTDTNI----GS-IYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVI 110 (393)
T ss_dssp CSEEEEEEEHHH----HH-HHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEE
T ss_pred CCeEEEEECCcH----HH-HHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEE
Confidence 478999998632 22 2456888888877 777642222 1 2344456666665556 6 9999
Q ss_pred EEcCCchHHHHHHHHhcCccccccCCccEEEecC--CChhhHH
Q 022147 172 CVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA--GTGNGMI 212 (302)
Q Consensus 172 vvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~--GTgN~~A 212 (302)
.+|| |.+.++...+...- ...+|+..||. ||+.+-+
T Consensus 111 alGG-Gsv~D~ak~~Aa~~----~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 111 ALGG-GVIGDLTGFVASTY----MRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp EEES-HHHHHHHHHHHHHG----GGCCEEEEEECSHHHHHTTT
T ss_pred EECC-cHHHHHHHHHHHHh----cCCCCEEEECCchhhhhhcC
Confidence 9998 88888877776311 12789999999 8887773
No 13
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=95.03 E-value=0.05 Score=50.62 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=60.5
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE-eCCc--chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~-T~~~--~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+|++||..+..-+ .+.+++...|+.+|+++.++. ...+ +...++ +.+...+.|.||.+|| |++.++...+
T Consensus 35 ~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGG-Gsv~D~aK~v 107 (354)
T 3ce9_A 35 KRVSLYFGEGIYE-----LFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGG-GKAIDAVKYM 107 (354)
T ss_dssp SEEEEEEETTHHH-----HHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEES-HHHHHHHHHH
T ss_pred CeEEEEECccHHH-----HHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECC-hHHHHHHHHH
Confidence 6899999875432 234688899999999887655 3322 233344 4444567899999998 8888888887
Q ss_pred hcCccccccCCccEEEecCCCh
Q 022147 187 LEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTg 208 (302)
.-. ..+|+..||.=.+
T Consensus 108 A~~------~~~p~i~IPTT~~ 123 (354)
T 3ce9_A 108 AFL------RKLPFISVPTSTS 123 (354)
T ss_dssp HHH------HTCCEEEEESCCS
T ss_pred Hhh------cCCCEEEecCccc
Confidence 643 2789999998443
No 14
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=94.64 E-value=0.038 Score=51.75 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=58.8
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEE--EEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v--~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+|++||.++..-+ . +.+.+...|+.+|+++.+ +..+.. ....++++.+...+.|.||.+|| |++.++...+
T Consensus 32 ~~~livtd~~~~~----~-~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~i 105 (370)
T 1jq5_A 32 NKTVVIADEIVWK----I-AGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG-GKTLDTAKAV 105 (370)
T ss_dssp SEEEEEECHHHHH----H-THHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHH
T ss_pred CeEEEEEChHHHH----H-HHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHH
Confidence 7999999874432 2 336888999999987742 211211 23445555555568999999998 8888988888
Q ss_pred hcCccccccCCccEEEecC
Q 022147 187 LEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (302)
... ..+|+..||.
T Consensus 106 A~~------~~~p~i~IPT 118 (370)
T 1jq5_A 106 ADE------LDAYIVIVPT 118 (370)
T ss_dssp HHH------HTCEEEEEES
T ss_pred HHh------cCCCEEEecc
Confidence 643 2789999997
No 15
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=94.60 E-value=0.17 Score=47.54 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=60.5
Q ss_pred CcEEEEEEcCCCCCCc-hhhhHHHHHHHHHHhcCCcEEEEE---e-CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 109 PKRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQE---T-TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~-a~~~~~~~v~~~L~~ag~~~~v~~---T-~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
.+|++|+..+...+.. + .+ +++...|+.+|+++.++. . .+.+...++++.+...++|.||.+|| |++.++.
T Consensus 33 ~~~~livtd~~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~a 108 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDG--AV-DKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG-GSPHDCG 108 (387)
T ss_dssp CSEEEEECCTTTC--CCS--SH-HHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHH
T ss_pred CCEEEEEECcchhhccch--HH-HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cchhhHH
Confidence 3789999987654321 1 23 678889999998876543 1 12334456666666678999999998 7888877
Q ss_pred HHHhcC---c--ccc-------ccCCccEEEecC
Q 022147 184 NGLLER---E--DWN-------DAIKVPLGVVPA 205 (302)
Q Consensus 184 ngL~~~---~--~~~-------~~~~~plgiIP~ 205 (302)
..+... + -|+ ....+|+..||.
T Consensus 109 K~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 142 (387)
T 3bfj_A 109 KGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNT 142 (387)
T ss_dssp HHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEEC
T ss_pred HHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 766431 0 000 113789999997
No 16
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=94.37 E-value=0.18 Score=47.46 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=64.1
Q ss_pred HHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEc
Q 022147 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 99 l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvG 174 (302)
+.+.+... ..+|++||..+.- .... +.+.+...|+.+|+++.++.. .+.+...++++.+...+.|.||.+|
T Consensus 22 l~~~~~~~-g~~~~liVtd~~~---~~~g-~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 96 (383)
T 3ox4_A 22 AIKDLNGS-GFKNALIVSDAFM---NKSG-VVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLG 96 (383)
T ss_dssp HHHTTTTS-CCCEEEEEEEHHH---HHTT-HHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHc-CCCEEEEEECCch---hhCc-hHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 33444433 2478999988631 1111 336888999999998866531 2233444556665556899999999
Q ss_pred CCchHHHHHHHHhcC---c--ccc-------ccCCccEEEecCC
Q 022147 175 GDGILVEVVNGLLER---E--DWN-------DAIKVPLGVVPAG 206 (302)
Q Consensus 175 GDGTl~evvngL~~~---~--~~~-------~~~~~plgiIP~G 206 (302)
| |++.++...+... + -|+ ....+|+..||.=
T Consensus 97 G-Gsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 139 (383)
T 3ox4_A 97 G-GSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTT 139 (383)
T ss_dssp S-HHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECS
T ss_pred C-cHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCC
Confidence 9 8888877766321 1 010 1236899999983
No 17
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=94.33 E-value=0.052 Score=51.42 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+|++||..|..-+ . +.+.+...|+. |+++.....+ ......++++.+...+.|.||.+|| |++.++...+
T Consensus 53 ~r~liVtd~~~~~----~-~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~AK~i 125 (387)
T 3uhj_A 53 KRALVLIDRVLFD----A-LSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGG-GKTADTAKIV 125 (387)
T ss_dssp SEEEEEECTTTHH----H-HHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESS-HHHHHHHHHH
T ss_pred CEEEEEECchHHH----H-HHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHH
Confidence 7899999875532 2 34688889998 8887222211 2233344555555567999999999 9999998888
Q ss_pred hcCccccccCCccEEEecCC
Q 022147 187 LEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~G 206 (302)
... ..+|+..||.=
T Consensus 126 A~~------~~~p~i~IPTT 139 (387)
T 3uhj_A 126 AID------TGARIVIAPTI 139 (387)
T ss_dssp HHH------TTCEEEECCSS
T ss_pred HHh------cCCCEEEecCc
Confidence 643 27899999983
No 18
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=94.24 E-value=0.14 Score=48.59 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=59.8
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++||..+.+-... . +.+.+...|+.+|+++.++.- .+.+...++++.+...+.|.||.+|| |++.++...
T Consensus 44 ~r~liVtd~~~~~~~--g-~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~ 119 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKN--G-VYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG-GSVVDSAKA 119 (407)
T ss_dssp CEEEEEECSSHHHHS--S-HHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHH
T ss_pred CeEEEEECchHHhhc--c-HHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hhHHHHHHH
Confidence 689999874322111 1 236888899999998865532 12234456666666678999999998 788887776
Q ss_pred HhcCc-----ccc-------ccCCccEEEecC
Q 022147 186 LLERE-----DWN-------DAIKVPLGVVPA 205 (302)
Q Consensus 186 L~~~~-----~~~-------~~~~~plgiIP~ 205 (302)
+...- .|+ ....+|+..||.
T Consensus 120 iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 151 (407)
T 1vlj_A 120 VAAGALYEGDIWDAFIGKYQIEKALPIFDVLT 151 (407)
T ss_dssp HHHHTTCSSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred HHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 64420 000 114789999997
No 19
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=94.12 E-value=0.2 Score=47.50 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=60.5
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC------CcchHHHHHHHhhcCCC---ceEEEEcCCch
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKY---DGIVCVSGDGI 178 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~------~~~~a~el~~~~~~~~~---d~IVvvGGDGT 178 (302)
..+|++||.++...+ .+.+.+...|+.+|+++.++.-. +.+...++.+.+...+. |.||.+|| |+
T Consensus 61 ~~~rvlIVtd~~v~~-----~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGG-Gs 134 (390)
T 3okf_A 61 AKQKVVIVTNHTVAP-----LYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGG-GV 134 (390)
T ss_dssp TTCEEEEEEETTTHH-----HHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEES-HH
T ss_pred CCCEEEEEECCcHHH-----HHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECC-cH
Confidence 457999999985432 24578999999999988754322 23344455555544444 79999988 88
Q ss_pred HHHHHHHHhcCccccccCCccEEEecC
Q 022147 179 LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 179 l~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
+.++...+...- ...+|+..||.
T Consensus 135 v~D~ak~~Aa~~----~rgip~I~IPT 157 (390)
T 3okf_A 135 IGDLVGFAAACY----QRGVDFIQIPT 157 (390)
T ss_dssp HHHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HhhHHHHHHHHh----cCCCCEEEeCC
Confidence 888888774211 12789999998
No 20
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=93.08 E-value=0.11 Score=48.82 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=59.3
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC----CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~----~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.+|++|+..+...+ .. +.+++...|+.+|+++.++.-- +.+...++++.+...+.|.||.+|| |++.++..
T Consensus 31 ~~~~livtd~~~~~---~g-~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK 105 (386)
T 1rrm_A 31 YQKALIVTDKTLVQ---CG-VVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG-GSPQDTCK 105 (386)
T ss_dssp CCEEEEECBHHHHH---TT-HHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHH
T ss_pred CCEEEEEECcchhh---ch-HHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHH
Confidence 46899988754321 11 3368889999999887654321 2334455666665568899999998 78888766
Q ss_pred HHhcCc---c----cc-------ccCCccEEEecC
Q 022147 185 GLLERE---D----WN-------DAIKVPLGVVPA 205 (302)
Q Consensus 185 gL~~~~---~----~~-------~~~~~plgiIP~ 205 (302)
.+...- . |+ ....+|+..||.
T Consensus 106 ~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 140 (386)
T 1rrm_A 106 AIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPT 140 (386)
T ss_dssp HHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEEC
T ss_pred HHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 664321 0 00 023789999997
No 21
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=93.07 E-value=0.16 Score=48.09 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=57.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC----CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~----~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+|++||.++.+-+.. .. .+.+...|+ |+++.++.-. +.+...++++.+...++|.||.+|| |++.++...
T Consensus 51 ~r~liVtd~~~~~~~--g~-~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~ 124 (408)
T 1oj7_A 51 ARVLITYGGGSVKKT--GV-LDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGG-GSVLDGTKF 124 (408)
T ss_dssp CEEEEEECSSHHHHH--SH-HHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECCchhhhc--cH-HHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHHH
Confidence 789999876432111 12 357777786 7776655322 2334445556555568899999998 788887776
Q ss_pred HhcC---cc----c--------cccCCccEEEecC--CCh
Q 022147 186 LLER---ED----W--------NDAIKVPLGVVPA--GTG 208 (302)
Q Consensus 186 L~~~---~~----~--------~~~~~~plgiIP~--GTg 208 (302)
+... +. | .....+|+..||. |||
T Consensus 125 iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtg 164 (408)
T 1oj7_A 125 IAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATG 164 (408)
T ss_dssp HHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSC
T ss_pred HHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchh
Confidence 6542 11 0 0114689999998 553
No 22
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=92.85 E-value=0.11 Score=48.63 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=56.9
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.+|++||..+.. . ... +++...|+..+ +.++.- ...+...++++.+...+.|.||.+|| |++.++..
T Consensus 34 ~~r~liVtd~~~----~-~~~-~~v~~~L~~~~--~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK 104 (353)
T 3hl0_A 34 LSRALVLSTPQQ----K-GDA-EALASRLGRLA--AGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGG-GSTTGLGK 104 (353)
T ss_dssp CCCEEEECCGGG----H-HHH-HHHHHHHGGGE--EEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHH
T ss_pred CCEEEEEecCch----h-hHH-HHHHHHHhhCC--cEEecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCC-cHHHHHHH
Confidence 367899887642 2 233 67888888754 333321 12234455666666678999999999 99999988
Q ss_pred HHhcCccccccCCccEEEecCC
Q 022147 185 GLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~G 206 (302)
.+... ..+|+..||.=
T Consensus 105 ~iA~~------~~~p~i~IPTT 120 (353)
T 3hl0_A 105 AIALR------TDAAQIVIPTT 120 (353)
T ss_dssp HHHHH------HCCEEEEEECS
T ss_pred HHHhc------cCCCEEEEeCC
Confidence 88664 27899999983
No 23
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=92.74 E-value=0.11 Score=50.25 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=56.5
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE--EEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT--VQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~--v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+|++||..+..-+ . +.+++...|+.+|+++. ++.-+... ...++++.+.. +.|.||.+|| |++.++...+
T Consensus 92 ~rvlIVtd~~~~~----~-~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGG-GSviD~AK~i 164 (450)
T 1ta9_A 92 KSAVVLADQNVWN----I-CANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGG-GKTMDSAKYI 164 (450)
T ss_dssp SEEEEEEEHHHHH----H-THHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEES-HHHHHHHHHH
T ss_pred CEEEEEECccHHH----H-HHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCC-cHHHHHHHHH
Confidence 4899999864432 2 33688899999998873 22222122 23334444444 8899999998 8888988888
Q ss_pred hcCccccccCCccEEEecC
Q 022147 187 LEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (302)
... ..+|+..||.
T Consensus 165 A~~------~giP~I~IPT 177 (450)
T 1ta9_A 165 AHS------MNLPSIICPT 177 (450)
T ss_dssp HHH------TTCCEEEEES
T ss_pred HHh------cCCCEEEEeC
Confidence 643 3789999997
No 24
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=92.35 E-value=0.1 Score=48.79 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=56.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC----CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~----~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.+|++||..+.. . ... +++...|+..+ +.++.-. ..+...+.++.+...+.|.||.+|| |++.++..
T Consensus 36 ~~r~liVtd~~~----~-~~~-~~v~~~L~~~~--~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~aK 106 (358)
T 3jzd_A 36 AKRALVLCTPNQ----Q-AEA-ERIADLLGPLS--AGVYAGAVMHVPIESARDATARAREAGADCAVAVGG-GSTTGLGK 106 (358)
T ss_dssp CSCEEEECCGGG----H-HHH-HHHHHHHGGGE--EEEECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHH
T ss_pred CCeEEEEeCCcH----H-HHH-HHHHHHhccCC--EEEecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCC-cHHHHHHH
Confidence 468899987642 2 233 67888888764 3333221 2233445555555568999999999 99999988
Q ss_pred HHhcCccccccCCccEEEecC
Q 022147 185 GLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~ 205 (302)
.+... ..+|+..||.
T Consensus 107 ~iA~~------~~~p~i~IPT 121 (358)
T 3jzd_A 107 AIALE------TGMPIVAIPT 121 (358)
T ss_dssp HHHHH------HCCCEEEEEC
T ss_pred HHHhc------cCCCEEEEeC
Confidence 88764 2789999998
No 25
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=92.00 E-value=1.1 Score=42.09 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=57.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC------cchHHHHHHHhh---cCCCceEEEEcCCchHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLD---LSKYDGIVCVSGDGILV 180 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~------~~~a~el~~~~~---~~~~d~IVvvGGDGTl~ 180 (302)
+|++|+.++...+ .+ +.+...|+.+|+++.++.-.. .+...++.+.+. ..+.|.||.+|| |.+.
T Consensus 44 ~rvlIVtd~~v~~-----~~-~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGG-Gsv~ 116 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-----TA-EEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGG-GAAT 116 (368)
T ss_dssp SEEEEEECGGGHH-----HH-HHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHH
T ss_pred CEEEEEECccHHH-----HH-HHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHH
Confidence 7999999975432 34 678899999999876554322 123344444433 245799999998 8888
Q ss_pred HHHHHHhcCccccccCCccEEEecC
Q 022147 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
++...+...- ...+|+..||.
T Consensus 117 D~ak~~Aa~~----~rgip~i~IPT 137 (368)
T 3qbe_A 117 DVAGFAAATW----LRGVSIVHLPT 137 (368)
T ss_dssp HHHHHHHHHG----GGCCEEEEEEC
T ss_pred HHHHHHHHHh----ccCCcEEEECC
Confidence 8887775321 12789999997
No 26
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=90.39 E-value=0.95 Score=41.90 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=50.1
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC------CcchHHHHHHHhhcCCC---ceEEEEcCCchHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKY---DGIVCVSGDGILV 180 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~------~~~~a~el~~~~~~~~~---d~IVvvGGDGTl~ 180 (302)
+|++||.++.. .. .+.+.+...| .+| ++++..-. +.+...++.+.+...+. |.||.+|| |++.
T Consensus 32 ~~~liVtd~~~----~~-~~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~ 103 (354)
T 1xah_A 32 DQSFLLIDEYV----NQ-YFANKFDDIL-SYE-NVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGG-GATG 103 (354)
T ss_dssp SCEEEEEEHHH----HH-HHHHHHC--------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEES-HHHH
T ss_pred CeEEEEECCcH----HH-HHHHHHHHHH-hcC-CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEECC-hHHH
Confidence 78999998632 22 2446788888 777 44432221 23344455666555556 89999998 8888
Q ss_pred HHHHHHhcCccccccCCccEEEecCC
Q 022147 181 EVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
++...+...- ...+|+..||.=
T Consensus 104 D~ak~vA~~~----~rgip~i~IPTT 125 (354)
T 1xah_A 104 DFAGFVAATL----LRGVHFIQVPTT 125 (354)
T ss_dssp HHHHHHHHHB----TTCCEEEEEECS
T ss_pred HHHHHHHHHh----ccCCCEEEECCc
Confidence 8887776321 127899999983
No 27
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=90.34 E-value=0.09 Score=49.32 Aligned_cols=84 Identities=13% Similarity=0.308 Sum_probs=54.3
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
+|++||..+..-+ ..+.+.+...|+.+|+.+.++.-+... ...++++.+.. +.|.||.+|| |++.++...+..
T Consensus 42 ~~~liVtd~~~~~----~~~~~~v~~~L~~~g~~~~~~~ge~~~~~v~~~~~~~~~-~~d~IIavGG-Gsv~D~aK~iA~ 115 (376)
T 1kq3_A 42 ERAFVVIDDFVDK----NVLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVEE-ETDVVVGIGG-GKTLDTAKAVAY 115 (376)
T ss_dssp SEEEEEECHHHHH----HTTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTCCT-TCCEEEEEES-HHHHHHHHHHHH
T ss_pred CeEEEEECccHHh----hccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHhc-CCCEEEEeCC-cHHHHHHHHHHH
Confidence 7899999763321 111245667777777555444333222 33344444444 8899999998 888898888874
Q ss_pred CccccccCCccEEEecC
Q 022147 189 REDWNDAIKVPLGVVPA 205 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~ 205 (302)
. ..+|+..||.
T Consensus 116 ~------~~~p~i~IPT 126 (376)
T 1kq3_A 116 K------LKKPVVIVPT 126 (376)
T ss_dssp H------TTCCEEEEES
T ss_pred h------cCCCEEEecC
Confidence 3 3789999997
No 28
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=90.04 E-value=1 Score=42.08 Aligned_cols=87 Identities=10% Similarity=0.041 Sum_probs=56.3
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC------CcchHHHHHHHhhc---CCCceEEEEcCCch
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDL---SKYDGIVCVSGDGI 178 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~------~~~~a~el~~~~~~---~~~d~IVvvGGDGT 178 (302)
..+|++|+.++...+. +.+.+...|+.+ +++.++.-. +.+...++.+.+.. .+.|.||.+|| |+
T Consensus 33 ~~~k~liVtd~~v~~~-----~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGG-Gs 105 (368)
T 2gru_A 33 EFDQYIMISDSGVPDS-----IVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGG-GL 105 (368)
T ss_dssp SCSEEEEEEETTSCHH-----HHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEES-HH
T ss_pred CCCEEEEEECCcHHHH-----HHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECC-hH
Confidence 3579999999865421 346888888877 666433221 22233344444433 34799999998 88
Q ss_pred HHHHHHHHhcCccccccCCccEEEecC
Q 022147 179 LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 179 l~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
+.++...+...- ...+|+..||.
T Consensus 106 v~D~ak~~Aa~~----~rgip~i~IPT 128 (368)
T 2gru_A 106 TGNVAGVAAGMM----FRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHHHh----cCCCCEEEECC
Confidence 888887776321 12789999998
No 29
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=89.57 E-value=0.14 Score=47.99 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=52.3
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe----CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T----~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.+|++|+..+. .. ..+ +++...|+ .+.++.. ...+...+.++.+...+.|.||.+|| |++.++..
T Consensus 37 ~~rvliVtd~~----~~-~~~-~~v~~~L~----~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK 105 (364)
T 3iv7_A 37 SAKVMVIAGER----EM-SIA-HKVASEIE----VAIWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGG-GSTIGLAK 105 (364)
T ss_dssp CSSEEEECCGG----GH-HHH-HHHTTTSC----CSEEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHH
T ss_pred CCEEEEEECCC----HH-HHH-HHHHHHcC----CCEEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHH
Confidence 36788888764 21 233 45555555 2222211 12334455666666678999999999 99999988
Q ss_pred HHhcCccccccCCccEEEecC
Q 022147 185 GLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~ 205 (302)
.+... ..+|+..||.
T Consensus 106 ~iA~~------~~~P~i~IPT 120 (364)
T 3iv7_A 106 AIAMT------TALPIVAIPT 120 (364)
T ss_dssp HHHHH------HCCCEEEEEC
T ss_pred HHHhc------cCCCEEEEcC
Confidence 88654 2789999998
No 30
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=88.02 E-value=0.49 Score=43.75 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=54.9
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC----CcchHHHHHHHhhcCCC---ceEEEEcCCchHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKY---DGIVCVSGDGILVE 181 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~----~~~~a~el~~~~~~~~~---d~IVvvGGDGTl~e 181 (302)
.+|++|+.++...+. +.+.+...|+.+++.+.++... +.+...++.+.+...+. |.||.+|| |.+.+
T Consensus 26 ~~~~livtd~~v~~~-----~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~D 99 (343)
T 3clh_A 26 KQKALIISDSIVAGL-----HLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGG-GVISD 99 (343)
T ss_dssp SSCEEEEEEHHHHTT-----THHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHHH
T ss_pred CCEEEEEECCcHHHH-----HHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECC-hHHHH
Confidence 468999998754321 3367777777665544333222 22344455555555555 99999998 78888
Q ss_pred HHHHHhcCccccccCCccEEEecC
Q 022147 182 VVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiIP~ 205 (302)
+...+...- ...+|+..||.
T Consensus 100 ~ak~~A~~~----~rgip~i~IPT 119 (343)
T 3clh_A 100 MVGFASSIY----FRGIDFINIPT 119 (343)
T ss_dssp HHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHh----ccCCCEEEeCC
Confidence 877775211 12789999995
No 31
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=86.16 E-value=2.8 Score=32.98 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=53.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcC-CCceEEEEc---CC--chHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS-KYDGIVCVS---GD--GILVEV 182 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~-~~d~IVvvG---GD--GTl~ev 182 (302)
|++++|++-... |..+++. +.+...+...|++++++....... -+.. .+|.||++. |+ |.+...
T Consensus 1 M~ki~I~y~S~t--GnT~~~A-~~ia~~l~~~g~~v~~~~~~~~~~-------~~l~~~~d~ii~g~pty~~~~G~~p~~ 70 (148)
T 3f6r_A 1 MSKVLIVFGSST--GNTESIA-QKLEELIAAGGHEVTLLNAADASA-------ENLADGYDAVLFGCSAWGMEDLEMQDD 70 (148)
T ss_dssp -CEEEEEEECSS--SHHHHHH-HHHHHHHHTTTCEEEEEETTTBCC-------TTTTTTCSEEEEEECEECSSSCEECHH
T ss_pred CCeEEEEEECCC--chHHHHH-HHHHHHHHhCCCeEEEEehhhCCH-------hHhcccCCEEEEEecccCCCCCCCcHH
Confidence 468888886544 4555544 688888988898888776543211 1224 788877776 55 776665
Q ss_pred HHHHhcCccccccCCccEEEecCC
Q 022147 183 VNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP~G 206 (302)
+..++++-........+++++-.|
T Consensus 71 ~~~fl~~l~~~~l~~k~~~vfg~G 94 (148)
T 3f6r_A 71 FLSLFEEFDRIGLAGRKVAAFASG 94 (148)
T ss_dssp HHHHHTTGGGTCCTTCEEEEEEEE
T ss_pred HHHHHHHhhccCCCCCEEEEEEeC
Confidence 555555411111235677777544
No 32
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=86.10 E-value=6.9 Score=33.53 Aligned_cols=88 Identities=15% Similarity=0.322 Sum_probs=59.2
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
++.+++.|++...+ ..-...++ +.++..+++.|+.+.+..+..... ..++.+.+...++|+||+.+.+. .+.++.
T Consensus 5 ~~s~~Igvi~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~ 80 (276)
T 3jy6_A 5 QSSKLIAVIVANID-DYFSTELF-KGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQE 80 (276)
T ss_dssp CCCCEEEEEESCTT-SHHHHHHH-HHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHH
T ss_pred CCCcEEEEEeCCCC-chHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHH
Confidence 45677777775432 22223333 577788888999888777664322 23556666667899999999988 777777
Q ss_pred HhcCccccccCCccEEEecC
Q 022147 186 LLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (302)
+... .+|+..+-.
T Consensus 81 l~~~-------~iPvV~i~~ 93 (276)
T 3jy6_A 81 ILHQ-------QMPVVSVDR 93 (276)
T ss_dssp HHTT-------SSCEEEESC
T ss_pred HHHC-------CCCEEEEec
Confidence 7654 677776643
No 33
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=85.94 E-value=5.4 Score=34.62 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=39.1
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
++.+.+.|++.... ..-...++ +.++..+++.|+.+.+..+... ....++.+.+...++|+||+.+.+.+ .+.++.
T Consensus 14 ~~s~~Igvi~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~ 90 (289)
T 2fep_A 14 KKTTTVGVIIPDIS-SIFYSELA-RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAE 90 (289)
T ss_dssp --CCEEEEEESCTT-SHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CCCCeEEEEeCCCC-CchHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHH
Confidence 45566777664221 11112222 4556666777776665544322 12233445555567777777776544 344454
Q ss_pred Hh
Q 022147 186 LL 187 (302)
Q Consensus 186 L~ 187 (302)
+.
T Consensus 91 l~ 92 (289)
T 2fep_A 91 FK 92 (289)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 34
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=85.93 E-value=5.1 Score=34.51 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=58.8
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCc-hHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVN 184 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDG-Tl~evvn 184 (302)
.+.+++.+++...+. .-...++ +.++..+++.|+++.+..+.... ...+..+.+...++|+||+.+.|. ...+.++
T Consensus 3 ~~~~~Ig~i~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (291)
T 3l49_A 3 LEGKTIGITAIGTDH-DWDLKAY-QAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQ 80 (291)
T ss_dssp CTTCEEEEEESCCSS-HHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCC-hHHHHHH-HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 355677777764332 1222233 57788888899888877665432 223455666667899999999985 4556677
Q ss_pred HHhcCccccccCCccEEEecCCC
Q 022147 185 GLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~GT 207 (302)
.+... ++|+..+-...
T Consensus 81 ~~~~~-------~iPvV~~~~~~ 96 (291)
T 3l49_A 81 KINDA-------GIPLFTVDTAT 96 (291)
T ss_dssp HHHHT-------TCCEEEESCCC
T ss_pred HHHHC-------CCcEEEecCCC
Confidence 77654 67777664433
No 35
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=85.78 E-value=8.7 Score=32.07 Aligned_cols=83 Identities=11% Similarity=0.167 Sum_probs=58.2
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCce-EEEEcCCchHHHHHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGL 186 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~-IVvvGGDGTl~evvngL 186 (302)
++.||. |...-..+. ++....|+..|++|++.... .+++..+++++....+.+. |+++||.|-|--++-++
T Consensus 14 ~V~Iim----GS~SD~~v~-~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~~ 88 (173)
T 4grd_A 14 LVGVLM----GSSSDWDVM-KHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAAK 88 (173)
T ss_dssp SEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHHH
T ss_pred eEEEEe----CcHhHHHHH-HHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhheec
Confidence 566665 333334444 57788999999999887753 3455667888877667774 56789999999999998
Q ss_pred hcCccccccCCccEEEecCCC
Q 022147 187 LEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GT 207 (302)
.. .|+.-+|.-+
T Consensus 89 t~---------~PVIgVPv~~ 100 (173)
T 4grd_A 89 TT---------VPVLGVPVAS 100 (173)
T ss_dssp CC---------SCEEEEEECC
T ss_pred CC---------CCEEEEEcCC
Confidence 64 3555557543
No 36
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=85.76 E-value=10 Score=33.78 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=55.0
Q ss_pred CCcEEEEEEc--CCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVN--PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivN--P~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
.+.++.+|+. +...+.--...+ +-++..+++.|+++.+..+....+..+..+.+...++|+||++|..- .+.+..
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~-~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~dgIi~~~~~~--~~~~~~ 79 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVW-EGISRFAQENNAKCKYVTASTDAEYVPSLSAFADENMGLVVACGSFL--VEAVIE 79 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHH-HHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHHTTCSEEEEESTTT--HHHHHH
T ss_pred CCcEEEEEEcCCCCCCccHHHHHH-HHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEECChhH--HHHHHH
Confidence 3467888886 443322223334 46777888889888777776555555666777667899999998542 233333
Q ss_pred HhcCccccccCCccEEEec
Q 022147 186 LLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP 204 (302)
+... ..++|+.++-
T Consensus 80 ~a~~-----~p~~p~v~id 93 (318)
T 2fqx_A 80 TSAR-----FPKQKFLVID 93 (318)
T ss_dssp HHHH-----CTTSCEEEES
T ss_pred HHHH-----CCCCEEEEEc
Confidence 3321 1257887774
No 37
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=85.48 E-value=4.4 Score=34.99 Aligned_cols=90 Identities=10% Similarity=0.085 Sum_probs=57.9
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchH-HHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVN 184 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl-~evvn 184 (302)
++.+++.+++...+. .-...++ +.++..+++.|+++.+..+.... ...+..+.+...++|+||+.+.|... .+.++
T Consensus 6 ~~~~~Ig~i~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 83 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKH-EFAQRLI-NAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE 83 (293)
T ss_dssp ---CEEEEEESCSCS-HHHHHHH-HHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH
T ss_pred CCCcEEEEEEecCCc-HHHHHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 456778887754332 2223333 57788888999988887765432 23355666666789999999887653 46777
Q ss_pred HHhcCccccccCCccEEEecC
Q 022147 185 GLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~ 205 (302)
.+... ++|+..+-.
T Consensus 84 ~~~~~-------~iPvV~~~~ 97 (293)
T 3l6u_A 84 EAKKA-------GIPVFAIDR 97 (293)
T ss_dssp HHHHT-------TCCEEEESS
T ss_pred HHHHc-------CCCEEEecC
Confidence 77665 678777644
No 38
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=85.46 E-value=7.5 Score=33.99 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=58.3
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHh
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~ 187 (302)
+++.+++...+...- ..++ +.++..+++.|+.+.+..+.... ...++.+.+...++|+||+.+-|.. +.+.++.+.
T Consensus 3 ~~Igvi~~~~~~~~~-~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 3 VKIGMAIDDLRLERW-QKDR-DIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp CEEEEEESCCSSSTT-HHHH-HHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred cEEEEEeCCCCChHH-HHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 456666654333322 2344 67888899999988877665322 2234566666678999999998875 367777776
Q ss_pred cCccccccCCccEEEecCC
Q 022147 188 EREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~G 206 (302)
+. .+|+..+-..
T Consensus 81 ~~-------~iPvV~~~~~ 92 (313)
T 3m9w_A 81 QE-------GIKVLAYDRM 92 (313)
T ss_dssp TT-------TCEEEEESSC
T ss_pred HC-------CCeEEEECCc
Confidence 65 6777766543
No 39
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=85.45 E-value=2.7 Score=35.89 Aligned_cols=88 Identities=9% Similarity=0.135 Sum_probs=55.8
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
.+++.|++...+.. --..+ .+.++..+++.|+.+.+..+... ....++.+.+...++|+||+.+.+..-.+.++.+.
T Consensus 2 s~~Igvi~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 2 TRTLGFILPDLENP-SYARI-AKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CCEEEEEESCTTCH-HHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred ceEEEEEeCCCcCh-hHHHH-HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 45677777543322 22223 35777888889998887776542 22335566666678999999988744355666665
Q ss_pred cCccccccCCccEEEecC
Q 022147 188 EREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (302)
.. .+|+..+-.
T Consensus 80 ~~-------~iPvV~~~~ 90 (272)
T 3o74_A 80 DK-------GLPVIAIDR 90 (272)
T ss_dssp HT-------TCCEEEESS
T ss_pred Hc-------CCCEEEEcc
Confidence 54 667766543
No 40
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=85.38 E-value=6.7 Score=34.01 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=54.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC-cEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~-~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL 186 (302)
+++.+++.-. ...-...++ +.++..+++.|. ++.+..+.. .....+..+.+...++|+||+.+.|.+ ..+.++.+
T Consensus 3 ~~Igvi~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 80 (309)
T 2fvy_A 3 TRIGVTIYKY-DDNFMSVVR-KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA 80 (309)
T ss_dssp EEEEEEESCT-TSHHHHHHH-HHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHH
T ss_pred cEEEEEeccC-CcHHHHHHH-HHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHH
Confidence 4666766432 222222233 567778888887 776665543 222344566666678999999998876 45677776
Q ss_pred hcCccccccCCccEEEecCC
Q 022147 187 LEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~G 206 (302)
... .+|+..+-..
T Consensus 81 ~~~-------~iPvV~~~~~ 93 (309)
T 2fvy_A 81 RGQ-------NVPVVFFNKE 93 (309)
T ss_dssp HTT-------TCCEEEESSC
T ss_pred HHC-------CCcEEEecCC
Confidence 553 6787776543
No 41
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=84.99 E-value=4.8 Score=34.82 Aligned_cols=92 Identities=7% Similarity=0.028 Sum_probs=58.8
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhc-CCcEEEEEeC----CcchHHHHHHHhhcCCCceEEEEcCCch-HH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LV 180 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~a-g~~~~v~~T~----~~~~a~el~~~~~~~~~d~IVvvGGDGT-l~ 180 (302)
++.+++.|++.......--..++ +.++..+++. |..+.+..+. ......++.+.+...++|+||+.+-|.. ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 84 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQ-KGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK 84 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHH-HHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH
T ss_pred CCcceEEEEecCCCCchHHHHHH-HHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHH
Confidence 45677887776542222223333 5777888888 8888776652 2222345566666678999999998874 45
Q ss_pred HHHHHHhcCccccccCCccEEEecCC
Q 022147 181 EVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
+.++.+... ++|+..+-..
T Consensus 85 ~~~~~~~~~-------~iPvV~~~~~ 103 (304)
T 3gbv_A 85 GFTDALNEL-------GIPYIYIDSQ 103 (304)
T ss_dssp HHHHHHHHH-------TCCEEEESSC
T ss_pred HHHHHHHHC-------CCeEEEEeCC
Confidence 667776554 6787776543
No 42
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=84.76 E-value=4.3 Score=35.21 Aligned_cols=89 Identities=10% Similarity=0.116 Sum_probs=52.1
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
++.+++.+++... ...-...+ .+.++..+++.|+.+.+..+... ....++.+.+...++|+||+.+.+.+-.+++..
T Consensus 18 ~~~~~Ig~i~~~~-~~~~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 95 (293)
T 2iks_A 18 GRTRSIGLVIPDL-ENTSYTRI-ANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQR 95 (293)
T ss_dssp CCCCEEEEEESCS-CSHHHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHT
T ss_pred CCCcEEEEEeCCC-cCcHHHHH-HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHH
Confidence 4566777777432 22122223 35677778888888777665432 223345566666789999998887643334444
Q ss_pred HhcCccccccCCccEEEec
Q 022147 186 LLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP 204 (302)
+... ++|+..+-
T Consensus 96 ~~~~-------~iPvV~~~ 107 (293)
T 2iks_A 96 WAND-------PFPIVALD 107 (293)
T ss_dssp TTTS-------SSCEEEEE
T ss_pred HHhC-------CCCEEEEC
Confidence 4322 56766653
No 43
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=84.67 E-value=1.7 Score=40.01 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=41.0
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.-.++++.+...+.|.+|++|||||+.-+ +.|.+. .+|+.-||.=--||+..
T Consensus 82 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~-------~i~vvgiPkTIDNDl~~ 133 (320)
T 1pfk_A 82 IRAVAIENLKKRGIDALVVIGGDGSYMGA-MRLTEM-------GFPCIGLPGTIDNDIKG 133 (320)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECHHHHHHH-HHHHHT-------TCCEEEEEBCTTCCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEECCCchHHHH-HHHHhh-------CCCEEEEeccccCCCCC
Confidence 34566677777789999999999998664 555553 78999999999999874
No 44
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=84.57 E-value=8.2 Score=33.13 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=50.4
Q ss_pred CCCcEEEEEEcC--CCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 107 GRPKRLYIFVNP--FGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 107 ~r~~r~~vivNP--~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
.+.+++.+++.- .+.. -...++ +.++..+++.|+++.+..+.. +....+..+.+...++|+||+.+.|.+ .+.+
T Consensus 17 ~~~~~Ig~i~~~~~~~~~-~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~ 93 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGI-YFSELL-FHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-VDEI 93 (296)
T ss_dssp --CCEEEEEECGGGCC---CHHHHH-HHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSC-HHHH
T ss_pred CCCceEEEEeCCcccCCc-hHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC-hHHH
Confidence 355677777743 2222 222233 567777888888776655432 222334556665678999999988754 2455
Q ss_pred HHHhc-CccccccCCccEEEec
Q 022147 184 NGLLE-REDWNDAIKVPLGVVP 204 (302)
Q Consensus 184 ngL~~-~~~~~~~~~~plgiIP 204 (302)
..+.+ . ++|+..+-
T Consensus 94 ~~l~~~~-------~iPvV~~~ 108 (296)
T 3brq_A 94 DDIIDAH-------SQPIMVLN 108 (296)
T ss_dssp HHHHHTC-------SSCEEEES
T ss_pred HHHHhcC-------CCCEEEEc
Confidence 55544 3 56766553
No 45
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=84.51 E-value=7.2 Score=33.64 Aligned_cols=86 Identities=10% Similarity=0.244 Sum_probs=49.6
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
++.+++.+++.-. ...-...+ .+.++..+++.|+.+.+..+.... ...++.+.+...++|+||+.+.+.+ .+.+..
T Consensus 6 ~~~~~Igvi~~~~-~~~~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 82 (285)
T 3c3k_A 6 AKTGMLLVMVSNI-ANPFCAAV-VKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQN 82 (285)
T ss_dssp -CCCEEEEEESCT-TSHHHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHH
T ss_pred CCCCEEEEEeCCC-CCchHHHH-HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 4556777777432 22222223 356677788888887766554322 2234556666678999999887654 345555
Q ss_pred HhcCccccccCCccEEEe
Q 022147 186 LLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiI 203 (302)
+. . ++|+..+
T Consensus 83 l~-~-------~iPvV~~ 92 (285)
T 3c3k_A 83 II-G-------AFPWVQC 92 (285)
T ss_dssp HH-T-------TSSEEEE
T ss_pred Hh-c-------CCCEEEE
Confidence 54 3 5566555
No 46
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=84.48 E-value=4.4 Score=34.63 Aligned_cols=86 Identities=10% Similarity=0.131 Sum_probs=47.3
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+.+++.+++...+ ..-...++ +.++..+++.|+.+.+..+.. .....++.+.+...++|+||+.+.|.+ .+.+..+
T Consensus 2 ~s~~Ig~i~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l 78 (275)
T 3d8u_A 2 NAYSIALIIPSLF-EKACAHFL-PSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLL 78 (275)
T ss_dssp --CEEEEEESCSS-CHHHHHHH-HHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHH
T ss_pred CceEEEEEeCCCc-cccHHHHH-HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHH
Confidence 3456777764322 11112233 566777778887776655543 222334556666677888888887654 3455555
Q ss_pred hcCccccccCCccEEEe
Q 022147 187 LEREDWNDAIKVPLGVV 203 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiI 203 (302)
... ++|+..+
T Consensus 79 ~~~-------~iPvV~~ 88 (275)
T 3d8u_A 79 EAS-------NTPVLEI 88 (275)
T ss_dssp HHH-------TCCEEEE
T ss_pred HhC-------CCCEEEE
Confidence 432 4566555
No 47
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=84.17 E-value=4.2 Score=35.30 Aligned_cols=88 Identities=17% Similarity=0.087 Sum_probs=48.3
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHH---HHHHhhcCCCceEEEEcCCchHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKE---IVKVLDLSKYDGIVCVSGDGILVEV 182 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~e---l~~~~~~~~~d~IVvvGGDGTl~ev 182 (302)
++.+++.+++. .....-...+ .+.++..+++.|+.+.+..+... ....+ +.+.+...++|+||+.+.|.+ .+.
T Consensus 6 ~~~~~Ig~i~~-~~~~~~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~ 82 (290)
T 2rgy_A 6 QQLGIIGLFVP-TFFGSYYGTI-LKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH-DED 82 (290)
T ss_dssp --CCEEEEECS-CSCSHHHHHH-HHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHH
T ss_pred CCCCeEEEEeC-CCCCchHHHH-HHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHH
Confidence 34556666663 3222122222 24666777778877766555432 22234 556665567888888887765 455
Q ss_pred HHHHhcCccccccCCccEEEec
Q 022147 183 VNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP 204 (302)
++.+... ++|+..+-
T Consensus 83 ~~~l~~~-------~iPvV~~~ 97 (290)
T 2rgy_A 83 LDELHRM-------HPKMVFLN 97 (290)
T ss_dssp HHHHHHH-------CSSEEEES
T ss_pred HHHHhhc-------CCCEEEEc
Confidence 5555432 56665553
No 48
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=84.12 E-value=3.1 Score=38.91 Aligned_cols=88 Identities=9% Similarity=0.135 Sum_probs=51.8
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC----CcchHHHHHHHhhcCC---CceEEEEcCCchHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSK---YDGIVCVSGDGILVE 181 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~----~~~~a~el~~~~~~~~---~d~IVvvGGDGTl~e 181 (302)
.++++||..|.-- .. .+...|+.+++++.++.-- +.+...++++.+...+ .|.||.+|| |++.+
T Consensus 53 ~~~~liVtd~~~~---~~-----~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIavGG-GS~iD 123 (375)
T 3rf7_A 53 NDFVVFLVDDVHQ---HK-----PLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGG-GSTMD 123 (375)
T ss_dssp TCCEEEEEEGGGT---TS-----HHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEEES-HHHHH
T ss_pred CCeEEEEECchhh---hh-----HHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEeCC-cHHHH
Confidence 3678888876422 11 2445566778887654321 1223334444443334 999999999 88888
Q ss_pred HHHHHhcCc---c-------c--cccCCccEEEecC
Q 022147 182 VVNGLLERE---D-------W--NDAIKVPLGVVPA 205 (302)
Q Consensus 182 vvngL~~~~---~-------~--~~~~~~plgiIP~ 205 (302)
+...+...- . | .....+|+..||.
T Consensus 124 ~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 159 (375)
T 3rf7_A 124 LAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPT 159 (375)
T ss_dssp HHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEES
T ss_pred HHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcC
Confidence 877764321 0 0 0123689999996
No 49
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=83.59 E-value=5.5 Score=34.97 Aligned_cols=97 Identities=18% Similarity=0.271 Sum_probs=54.6
Q ss_pred CcEEEEEEcCCC------CCCchhhhHHHHHH--HHHHhcCCcEEEEEeCCcc--------------------------h
Q 022147 109 PKRLYIFVNPFG------GKKIASKIFLDDVK--PLLEDANIQFTVQETTQQL--------------------------H 154 (302)
Q Consensus 109 ~~r~~vivNP~s------G~~~a~~~~~~~v~--~~L~~ag~~~~v~~T~~~~--------------------------~ 154 (302)
++|++|++-... |+..+.... +.+. ..|+++|+++++...+... +
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~-E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~ 87 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFS-EALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHF 87 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHH-HHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHH
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHH-HHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHH
Confidence 578998886532 222232111 2333 4688999999887643211 0
Q ss_pred HHHHHH------HhhcCCCceEEEEcCCchHH---------HHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 155 AKEIVK------VLDLSKYDGIVCVSGDGILV---------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 155 a~el~~------~~~~~~~d~IVvvGGDGTl~---------evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
-..+.. +++...||.|++.||-|+.. +++.....+ ..+|+.|=.|.. .++..
T Consensus 88 ~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~-------gk~iaaIC~Gp~-~La~a 154 (247)
T 3n7t_A 88 MEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKR-------GGVIGAVCHGPA-MLPGI 154 (247)
T ss_dssp HHHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHT-------TCEEEEETTGGG-GGGGC
T ss_pred HHHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHc-------CCEEEEEChHHH-HHHHh
Confidence 111211 11234699999999999842 223333332 678999988873 44443
No 50
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=83.37 E-value=4.9 Score=35.00 Aligned_cols=89 Identities=7% Similarity=0.073 Sum_probs=54.6
Q ss_pred CCCcEEEEEEcCC---CCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 107 GRPKRLYIFVNPF---GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 107 ~r~~r~~vivNP~---sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
++.+.+.|++... ....-...++ +.++..+++.|+.+.+..+.......++.+.+...++|+||+++.+.+- +.+
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~ 81 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMI-SWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-FRL 81 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHH-HHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC-HHH
T ss_pred CccceEEEEecCCCccccChhHHHHH-HHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh-HHH
Confidence 4566788777521 1111112233 5677778888988888777654444566666666789999998877543 556
Q ss_pred HHHhcCccccccCCccEEEec
Q 022147 184 NGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP 204 (302)
..+... .+|+..+-
T Consensus 82 ~~l~~~-------~iPvV~~~ 95 (294)
T 3qk7_A 82 QYLQKQ-------NFPFLALG 95 (294)
T ss_dssp HHHHHT-------TCCEEEES
T ss_pred HHHHhC-------CCCEEEEC
Confidence 656544 56665553
No 51
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=83.36 E-value=4.1 Score=35.27 Aligned_cols=89 Identities=13% Similarity=0.222 Sum_probs=55.6
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
++.+++.|++...+. .-...++ +.++..+++.|+.+.+..+... ....++.+.+...++|+||+.+.+. ..+.+..
T Consensus 6 ~~~~~Igvv~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 6 KRSNVVGLIVSDIEN-VFFAEVA-SGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp -CCCEEEEEESCTTS-HHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred CCCcEEEEEECCCcc-hHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 456778887754322 2223333 5777888888988887776543 2334566666667899999998876 4455555
Q ss_pred HhcCccccccCCccEEEecC
Q 022147 186 LLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (302)
+... .+|+..+-.
T Consensus 83 ~~~~-------~iPvV~~~~ 95 (291)
T 3egc_A 83 ELPK-------TFPIVAVNR 95 (291)
T ss_dssp SSCT-------TSCEEEESS
T ss_pred hhcc-------CCCEEEEec
Confidence 5443 566655543
No 52
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=83.28 E-value=6.7 Score=34.00 Aligned_cols=87 Identities=11% Similarity=-0.018 Sum_probs=55.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHh
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~ 187 (302)
+.++.+++...+. .-...+ .+.++..+++.|+++.+..+.......+..+.+...++|+||+.+-|.. ..+.++.+.
T Consensus 2 ~~~Ig~i~~~~~~-~~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~ 79 (306)
T 8abp_A 2 NLKLGFLVKQPEE-PWFQTE-WKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR 79 (306)
T ss_dssp CEEEEEEESCTTS-HHHHHH-HHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHH
T ss_pred CeEEEEEeCCCCc-hHHHHH-HHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHH
Confidence 3466676653322 222223 3567788888898877666644444445666666678999999998875 344566665
Q ss_pred cCccccccCCccEEEec
Q 022147 188 EREDWNDAIKVPLGVVP 204 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP 204 (302)
+. .+|+..+-
T Consensus 80 ~~-------~iPvV~~~ 89 (306)
T 8abp_A 80 GY-------DMKVIAVD 89 (306)
T ss_dssp HT-------TCEEEEES
T ss_pred HC-------CCcEEEeC
Confidence 54 67877665
No 53
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=82.96 E-value=11 Score=33.59 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=54.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchH-HHHHHHhhc--CCCceEEEEcCCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA-KEIVKVLDL--SKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a-~el~~~~~~--~~~d~IVvvGGDGTl~evvngL 186 (302)
+++.+|+ |......-...+.+.++..+++.|+.+.+..++..... .+.++.+.. .++|+||+++-+....++++.+
T Consensus 4 ~~Ig~i~-p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~ 82 (350)
T 3h75_A 4 TSVVFLN-PGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLS 82 (350)
T ss_dssp CEEEEEE-CSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEC-CCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHH
Confidence 4555554 54433122222335777888888998888766543221 234555554 4899999997445666777776
Q ss_pred hcCccccccCCccEEEecCCC
Q 022147 187 LEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GT 207 (302)
... .+|+..+-...
T Consensus 83 ~~~-------giPvV~~~~~~ 96 (350)
T 3h75_A 83 QGS-------GIKLFIVNSPL 96 (350)
T ss_dssp TTS-------CCEEEEEESCC
T ss_pred HhC-------CCcEEEEcCCC
Confidence 554 67877765544
No 54
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=82.31 E-value=14 Score=32.61 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=55.4
Q ss_pred CCCcEEEEEEcC--CCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 107 GRPKRLYIFVNP--FGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 107 ~r~~r~~vivNP--~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
++.+.+.+++.. .+.. -...++ +.++..+++.|+.+.+..+....+ ..++.+.+...++|+||+.+.+..-.++.
T Consensus 59 ~~~~~Igvi~~~~~~~~~-~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 136 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGI-YFSELL-FHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEID 136 (338)
T ss_dssp -CCSEEEEEECTTTTSTT-HHHHHH-HHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHH
T ss_pred CCCCEEEEEecCCcccCh-hHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHH
Confidence 456778888764 2322 222233 577888889999887777654322 33456666667899999999887755455
Q ss_pred HHHhcCccccccCCccEEEec
Q 022147 184 NGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP 204 (302)
..+... .+|+..+-
T Consensus 137 ~~~~~~-------~iPvV~~~ 150 (338)
T 3dbi_A 137 DIIDAH-------SQPIMVLN 150 (338)
T ss_dssp HHHHHC-------SSCEEEES
T ss_pred HHHHcC-------CCCEEEEc
Confidence 444333 45665553
No 55
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=82.05 E-value=11 Score=32.34 Aligned_cols=89 Identities=10% Similarity=0.175 Sum_probs=48.8
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
++.+++.+++.- ....-...+ .+.++..+++.|+.+.+..+... ....++.+.+...++|+||+.+.+.+ .+++..
T Consensus 5 ~~~~~Ig~i~~~-~~~~~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 81 (289)
T 1dbq_A 5 NHTKSIGLLATS-SEAAYFAEI-IEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP-EPLLAM 81 (289)
T ss_dssp ---CEEEEEESC-TTSHHHHHH-HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC-HHHHHH
T ss_pred CCCCEEEEEeCC-CCChHHHHH-HHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC-HHHHHH
Confidence 345667777642 222122222 35667777888888777655432 22234556665678999999988764 234444
Q ss_pred HhcCccccccCCccEEEec
Q 022147 186 LLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP 204 (302)
+... .++|+..+-
T Consensus 82 l~~~------~~iPvV~~~ 94 (289)
T 1dbq_A 82 LEEY------RHIPMVVMD 94 (289)
T ss_dssp HHHT------TTSCEEEEE
T ss_pred HHhc------cCCCEEEEc
Confidence 4321 156766553
No 56
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=82.03 E-value=9.8 Score=31.47 Aligned_cols=84 Identities=18% Similarity=0.195 Sum_probs=57.6
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCc-eEEEEcCCchHHHHHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d-~IVvvGGDGTl~evvngL 186 (302)
++.||. |...-..+. ++....|+..|++|++.... .+++..++++++..++.+ .|+++|+.+-|--++-++
T Consensus 5 ~V~Iim----gs~SD~~v~-~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 79 (163)
T 3ors_A 5 KVAVIM----GSSSDWKIM-QESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASL 79 (163)
T ss_dssp CEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH
T ss_pred eEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhc
Confidence 455554 322223344 57788999999999987753 445566777777655566 466789999999999998
Q ss_pred hcCccccccCCccEEEecCCCh
Q 022147 187 LEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTg 208 (302)
.. .|+.-+|.-++
T Consensus 80 t~---------~PVIgVP~~~~ 92 (163)
T 3ors_A 80 TT---------LPVIGVPIETK 92 (163)
T ss_dssp CS---------SCEEEEEECCT
T ss_pred cC---------CCEEEeeCCCC
Confidence 54 46666676554
No 57
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=82.03 E-value=9.2 Score=33.79 Aligned_cols=89 Identities=10% Similarity=0.094 Sum_probs=52.6
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhc-CCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVV 183 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~a-g~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evv 183 (302)
++..++.|++.. ...-...++ +.++..+++. |+++.+..+.. .....+..+.+...++|+||+.+.+.. +.+.+
T Consensus 4 ~~~~~Igvi~~~--~~~~~~~~~-~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 4 TPHFRIGVAQCS--DDSWRHKMN-DEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp --CCEEEEEESC--CSHHHHHHH-HHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CCCeEEEEEecC--CCHHHHHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 456678877743 211112222 4566677777 88777665543 223334566666678999999988764 34566
Q ss_pred HHHhcCccccccCCccEEEecC
Q 022147 184 NGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP~ 205 (302)
..+... .+|+..+-.
T Consensus 81 ~~~~~~-------~iPvV~~~~ 95 (325)
T 2x7x_A 81 EEAYQK-------GIPVILVDR 95 (325)
T ss_dssp HHHHHT-------TCCEEEESS
T ss_pred HHHHHC-------CCeEEEeCC
Confidence 666543 677776643
No 58
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=82.00 E-value=2 Score=39.45 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=41.1
Q ss_pred chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 153 ~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+.-.++++.+...+.|.+|++|||||+.- ++.|.+. .+|+.-||.=--||+..
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~-------~i~vvgiPkTIDNDl~~ 132 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHG-ALQLTRH-------GFNSIGLPGTIDNDIPY 132 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHH-HHHHHHT-------TCCEEEEEEETTCCCTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHH-HHHHHHh-------CCCEEEEeecccCCCCC
Confidence 34456667777778999999999999765 4555543 68999999988899874
No 59
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=81.87 E-value=10 Score=32.74 Aligned_cols=76 Identities=7% Similarity=0.078 Sum_probs=50.2
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
++.+.+.|++ ..+.. --..++ +.++..+++.|+.+.+..+....+..+..+.+...++|+||+.+.|..- +.+..+
T Consensus 10 ~~~~~Igvi~-~~~~~-~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~ 85 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQP-FHGDLV-EQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT-DELGAL 85 (289)
T ss_dssp ---CEEEEEE-ETTCH-HHHHHH-HHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH-HHHHHH
T ss_pred CCCCEEEEEE-ecCCc-hHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHH
Confidence 4567888888 43222 222233 5778888889998888877765545566667766789999999987764 555555
No 60
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=81.75 E-value=10 Score=32.50 Aligned_cols=86 Identities=10% Similarity=0.176 Sum_probs=56.5
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCch----HHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI----LVEVVN 184 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGT----l~evvn 184 (302)
+++.|++...+..- -..++ +.++..+++.|+.+.+..+... ....++.+.+...++|+||+.+.|.. ..+.+.
T Consensus 16 ~~Igvi~~~~~~~~-~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 93 (298)
T 3tb6_A 16 KTIGVLTTYISDYI-FPSII-RGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYL 93 (298)
T ss_dssp CEEEEEESCSSSTT-HHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHH
T ss_pred ceEEEEeCCCCchH-HHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHH
Confidence 67777775443322 23343 6788889999998887776532 22345566666678999999998863 345666
Q ss_pred HHhcCccccccCCccEEEec
Q 022147 185 GLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP 204 (302)
.+... .+|+..+-
T Consensus 94 ~~~~~-------~iPvV~~~ 106 (298)
T 3tb6_A 94 NLEKN-------GIPFAMIN 106 (298)
T ss_dssp HHHHT-------TCCEEEES
T ss_pred HHHhc-------CCCEEEEe
Confidence 66554 66776664
No 61
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=81.33 E-value=8.1 Score=33.22 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=52.8
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHh
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~ 187 (302)
+++.+++.- ....-...++ +.++..+++.|+++.+..+.. +....+..+.+...++|+||+.+.|.. +.+.++.+.
T Consensus 3 ~~Ig~i~~~-~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~ 80 (290)
T 2fn9_A 3 GKMAIVIST-LNNPWFVVLA-ETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAK 80 (290)
T ss_dssp CEEEEEESC-SSSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHH
T ss_pred eEEEEEeCC-CCChHHHHHH-HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHH
Confidence 456666643 2222222233 567778888898887766643 222334566666678999999987754 345666665
Q ss_pred cCccccccCCccEEEecC
Q 022147 188 EREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (302)
+. ++|+..+-.
T Consensus 81 ~~-------~iPvV~~~~ 91 (290)
T 2fn9_A 81 EA-------GIPVFCVDR 91 (290)
T ss_dssp HT-------TCCEEEESS
T ss_pred HC-------CCeEEEEec
Confidence 43 677766643
No 62
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=80.97 E-value=5.9 Score=34.27 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=43.0
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE-EeCC-cchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~-~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
++.+++.+++... ...-...+ .+.++..+++.|+++.+. .+.. .....++.+.+...++|+||+.+.+.+ .+.+.
T Consensus 6 ~~~~~Ig~i~~~~-~~~~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 82 (290)
T 3clk_A 6 KSSNVIAAVVSSV-RTNFAQQI-LDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQ 82 (290)
T ss_dssp --CCEEEEECCCC-SSSHHHHH-HHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC-----CHH
T ss_pred ccCCEEEEEeCCC-CChHHHHH-HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHH
Confidence 3456677666422 22222223 356677777888777665 4332 222234556666678899998887754 24455
Q ss_pred HHhcCccccccCCccEEEecC
Q 022147 185 GLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~ 205 (302)
.+... ++|+..+-.
T Consensus 83 ~l~~~-------~iPvV~~~~ 96 (290)
T 3clk_A 83 LLQSS-------DVPYCFLSM 96 (290)
T ss_dssp HHHCC---------CEEEESC
T ss_pred HHHhC-------CCCEEEEcC
Confidence 55432 567666543
No 63
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=80.83 E-value=3.5 Score=38.03 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=51.9
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe-C---CcchHHHHHHHhhc---CCCceEEEEcCCchHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-T---QQLHAKEIVKVLDL---SKYDGIVCVSGDGILVE 181 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T-~---~~~~a~el~~~~~~---~~~d~IVvvGGDGTl~e 181 (302)
.+|++|+.++... . +.+.+...|+ .++. .++.. + +.+...++.+.+.. ++.|.||.+|| |.+.+
T Consensus 28 ~~kvliVtd~~v~----~--~~~~v~~~L~-~~~~-~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D 98 (348)
T 1ujn_A 28 AGPAALLFDRRVE----G--FAQEVAKALG-VRHL-LGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGG-GTLTD 98 (348)
T ss_dssp SSCEEEEEEGGGH----H--HHHHHHHHHT-CCCE-EEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHHH
T ss_pred CCEEEEEECCcHH----H--HHHHHHHHhc-cCeE-EEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECC-cHHHH
Confidence 4689999986432 2 3467777777 4554 22221 1 22334444444433 34589999998 88888
Q ss_pred HHHHHhcCccccccCCccEEEecC
Q 022147 182 VVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiIP~ 205 (302)
+...+...- ...+|+..||.
T Consensus 99 ~ak~~A~~~----~rgip~i~IPT 118 (348)
T 1ujn_A 99 LGGFVAATY----LRGVAYLAFPT 118 (348)
T ss_dssp HHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHh----ccCCCEEEecC
Confidence 888776321 12789999997
No 64
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=80.73 E-value=16 Score=32.45 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=55.1
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+.+.+.+++...+.. -...++ +.++..+++.|+.+.+..+... +...++.+.+...++|+||+++-+.+- +.+..+
T Consensus 67 ~~~~Ig~i~~~~~~~-~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l 143 (344)
T 3kjx_A 67 RVNLVAVIIPSLSNM-VFPEVL-TGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAML 143 (344)
T ss_dssp CCSEEEEEESCSSSS-SHHHHH-HHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHH
T ss_pred CCCEEEEEeCCCCcH-HHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHH
Confidence 455677777443322 223333 5788888888988877766543 233355666666789999999877654 555655
Q ss_pred hcCccccccCCccEEEe
Q 022147 187 LEREDWNDAIKVPLGVV 203 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiI 203 (302)
... .+|+..+
T Consensus 144 ~~~-------~iPvV~i 153 (344)
T 3kjx_A 144 DAA-------GIPVVEI 153 (344)
T ss_dssp HHC-------SSCEEEE
T ss_pred HhC-------CCCEEEE
Confidence 544 6677666
No 65
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=80.55 E-value=14 Score=32.17 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=53.0
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+..+|+.+|.+|... .+.... +.++..+++.|+++........++..+.++++. .++|+|++ +.|.+...++..+
T Consensus 131 pg~~~I~~i~~~~~~--~~~~r~-~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~-~~~dai~~-~~D~~a~g~~~~l 205 (295)
T 3lft_A 131 PNVKTIGALYSSSED--NSKTQV-EEFKAYAEKAGLTVETFAVPSTNEIASTVTVMT-SKVDAIWV-PIDNTIASGFPTV 205 (295)
T ss_dssp TTCCEEEEEEETTCH--HHHHHH-HHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHT-TTCSEEEE-CSCHHHHHTHHHH
T ss_pred CCCcEEEEEeCCCCc--chHHHH-HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHH-hcCCEEEE-CCchhHHHHHHHH
Confidence 456899999998532 233333 567788889999876655555667777777765 46787665 6788877766666
Q ss_pred hc
Q 022147 187 LE 188 (302)
Q Consensus 187 ~~ 188 (302)
..
T Consensus 206 ~~ 207 (295)
T 3lft_A 206 VS 207 (295)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 66
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=80.41 E-value=3.6 Score=35.68 Aligned_cols=87 Identities=8% Similarity=0.051 Sum_probs=55.3
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC---cchHHHHHHHhhcCCCceEEEEcCCch-HHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEV 182 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~---~~~a~el~~~~~~~~~d~IVvvGGDGT-l~ev 182 (302)
++++++.+++...+..- -..+ .+.++..+++.|+++.+..+.. .....+..+.+...++|+||+.+.|.. +.+.
T Consensus 3 ~~~~~Igvi~~~~~~~~-~~~~-~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~ 80 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSY-WLSV-NYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHN 80 (304)
T ss_dssp --CCEEEEEESCSCSHH-HHHH-HHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTT
T ss_pred CCCcEEEEEeCCCCCcH-HHHH-HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHH
Confidence 46778888886443221 1223 3567788888899888887764 223345566665678999999988765 2344
Q ss_pred HHHHhcCccccccCCccEEEe
Q 022147 183 VNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiI 203 (302)
++.+. . .+|+..+
T Consensus 81 ~~~~~-~-------~iPvV~~ 93 (304)
T 3o1i_D 81 LKSWV-G-------NTPVFAT 93 (304)
T ss_dssp HHHHT-T-------TSCEEEC
T ss_pred HHHHc-C-------CCCEEEe
Confidence 55554 3 6787766
No 67
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=80.36 E-value=12 Score=30.98 Aligned_cols=64 Identities=9% Similarity=0.013 Sum_probs=43.0
Q ss_pred hhhhccCCCcEEEEEEcCCCC-------CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc
Q 022147 101 DFIDSFGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL 164 (302)
Q Consensus 101 ~~l~~~~r~~r~~vivNP~sG-------~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~ 164 (302)
+.++-...++.+.+|+|-..= ...+...=.+.++.+|+..|++++++.--...+..+..+++..
T Consensus 24 ~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 24 LAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp GBCCCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHT
T ss_pred ccccCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhh
Confidence 445555677888888876421 1222223346889999999999888877777777776666543
No 68
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=80.35 E-value=5.5 Score=34.30 Aligned_cols=88 Identities=11% Similarity=0.204 Sum_probs=53.0
Q ss_pred CCCcEEEEEEcC-----CCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchH-HHHHHHhhcCCCceEEEEcCCchHH
Q 022147 107 GRPKRLYIFVNP-----FGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA-KEIVKVLDLSKYDGIVCVSGDGILV 180 (302)
Q Consensus 107 ~r~~r~~vivNP-----~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a-~el~~~~~~~~~d~IVvvGGDGTl~ 180 (302)
++.+++.|++.. .+. .-...++ +.+...+++.|+.+.+..+....+. .++.+.+...++|+||+++.+.. .
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~ 82 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQN-PFFPEVI-RGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN-D 82 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTS-THHHHHH-HHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-C
T ss_pred CCCCEEEEEecCCccccccC-HHHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-h
Confidence 456677777654 222 2223333 5777888888887766555443222 34555666678999999887765 3
Q ss_pred HHHHHHhcCccccccCCccEEEec
Q 022147 181 EVVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiIP 204 (302)
+.++.+... .+|+..+-
T Consensus 83 ~~~~~l~~~-------~iPvV~~~ 99 (292)
T 3k4h_A 83 RIIQYLHEQ-------NFPFVLIG 99 (292)
T ss_dssp HHHHHHHHT-------TCCEEEES
T ss_pred HHHHHHHHC-------CCCEEEEC
Confidence 566666554 56766653
No 69
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=80.14 E-value=8.3 Score=33.44 Aligned_cols=90 Identities=11% Similarity=0.159 Sum_probs=55.8
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC--cchHHHHHHHhhcCCCceEEEEcCCch-HHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVN 184 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~--~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvn 184 (302)
+.+++.+++...+. .--..++ +.++..+++.|+.+.+..... .....+..+.+...++|+||+.+.|.. +.+.+.
T Consensus 3 ~~~~I~~i~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 3 LNETYMMITFQSGM-DYWKRCL-KGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp --CEEEEEESSTTS-THHHHHH-HHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred CCceEEEEEccCCC-hHHHHHH-HHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 34667766654333 2233343 678888888998887643322 222234556665578999999998875 456777
Q ss_pred HHhcCccccccCCccEEEecCC
Q 022147 185 GLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~G 206 (302)
.+... .+|+..+-..
T Consensus 81 ~~~~~-------~iPvV~~~~~ 95 (305)
T 3g1w_A 81 KAVDA-------GIPIVLFDSG 95 (305)
T ss_dssp HHHHT-------TCCEEEESSC
T ss_pred HHHHC-------CCcEEEECCC
Confidence 77665 6787776543
No 70
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=80.09 E-value=9 Score=34.39 Aligned_cols=87 Identities=14% Similarity=0.304 Sum_probs=51.5
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+.+.+.+++... ...-...++ +.++..+++.|+.+.+..+... +...++.+.+...++|+||+.+.+.+ .+.+..+
T Consensus 65 ~s~~Igvi~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l 141 (348)
T 3bil_A 65 RSNTIGVIVPSL-INHYFAAMV-TEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDL 141 (348)
T ss_dssp ---CEEEEESCS-SSHHHHHHH-HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHH
T ss_pred CCCEEEEEeCCC-CCcHHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHH
Confidence 445677777432 221122233 5677788888988877766532 22334566666678999999988766 4566666
Q ss_pred hcCccccccCCccEEEec
Q 022147 187 LEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP 204 (302)
... .+|+..+-
T Consensus 142 ~~~-------~iPvV~i~ 152 (348)
T 3bil_A 142 QKQ-------GMPVVLVD 152 (348)
T ss_dssp HHC--------CCEEEES
T ss_pred HhC-------CCCEEEEc
Confidence 443 56766653
No 71
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=78.62 E-value=14 Score=31.12 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCce-EEEEcCCchHHHHHHHHhcCccccccCCccEE
Q 022147 126 SKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGLLEREDWNDAIKVPLG 201 (302)
Q Consensus 126 ~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~-IVvvGGDGTl~evvngL~~~~~~~~~~~~plg 201 (302)
..+. ++....|+..|++|++.... .++...++++++...+.++ |+++|+.+-|--++-++.. .|+.
T Consensus 26 ~~v~-~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~---------~PVI 95 (183)
T 1o4v_A 26 LPVM-KQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITH---------LPVI 95 (183)
T ss_dssp HHHH-HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS---------SCEE
T ss_pred HHHH-HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhccC---------CCEE
Confidence 3344 57888999999999987763 4456667777776556664 6678999999999999954 4666
Q ss_pred EecCCCh
Q 022147 202 VVPAGTG 208 (302)
Q Consensus 202 iIP~GTg 208 (302)
-+|.-++
T Consensus 96 gVP~~~~ 102 (183)
T 1o4v_A 96 GVPVKTS 102 (183)
T ss_dssp EEEECCT
T ss_pred EeeCCCC
Confidence 6777654
No 72
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=78.47 E-value=12 Score=33.17 Aligned_cols=87 Identities=11% Similarity=0.198 Sum_probs=50.8
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
++.+++.+++.... ..-...++ +.++..+++.|+.+.+..+.... ...++.+.+...++|+||+.+.+.+ .+.+..
T Consensus 61 ~~~~~Ig~i~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 137 (332)
T 2o20_A 61 KRTTTVGVILPTIT-STYFAAIT-RGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIRTS 137 (332)
T ss_dssp -CCCEEEEEESCTT-CHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHHHH
T ss_pred CCCCEEEEEeCCCC-CcHHHHHH-HHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 35567877774322 21222233 56777788889887776654322 2234556666678999999887654 345555
Q ss_pred HhcCccccccCCccEEEe
Q 022147 186 LLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiI 203 (302)
+... .+|+..+
T Consensus 138 l~~~-------~iPvV~~ 148 (332)
T 2o20_A 138 LKNS-------RTPVVLV 148 (332)
T ss_dssp HHHH-------CCCEEEE
T ss_pred HHhC-------CCCEEEE
Confidence 5332 4565555
No 73
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=78.46 E-value=12 Score=31.35 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=58.4
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCc-eEEEEcCCchHHHHHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d-~IVvvGGDGTl~evvngL 186 (302)
++.||. |...-..+. ++....|+..|++|++.... .+++..++++++...+.+ .|+++|+.+-|--++-++
T Consensus 9 ~V~Iim----gS~SD~~v~-~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 83 (174)
T 3lp6_A 9 RVGVIM----GSDSDWPVM-ADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAA 83 (174)
T ss_dssp SEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHH
T ss_pred eEEEEE----CcHHhHHHH-HHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhc
Confidence 466664 332323344 57888999999999987753 445667777777655666 467789999999999998
Q ss_pred hcCccccccCCccEEEecCCCh
Q 022147 187 LEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTg 208 (302)
.. .|+.-+|.-++
T Consensus 84 t~---------~PVIgVP~~~~ 96 (174)
T 3lp6_A 84 TP---------LPVIGVPVPLG 96 (174)
T ss_dssp CS---------SCEEEEEECCS
T ss_pred cC---------CCEEEeeCCCC
Confidence 54 46666676554
No 74
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=78.45 E-value=16 Score=32.47 Aligned_cols=87 Identities=8% Similarity=0.192 Sum_probs=54.6
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
.+.+.+.+++...+..-- ..++ +.++..+++.|+.+.+..+... +...++.+.+...++|+||+++-+.+- +.+..
T Consensus 60 ~~~~~Igvi~~~~~~~~~-~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~~~ 136 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVF-LETL-TGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE-PFERI 136 (339)
T ss_dssp ---CEEEEEESCSTTCTT-HHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT-THHHH
T ss_pred CCCCEEEEEeCCCCCHHH-HHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HHHHH
Confidence 345678888754433322 3344 6788889999998877766543 233456666666789999999876543 45555
Q ss_pred HhcCccccccCCccEEEe
Q 022147 186 LLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiI 203 (302)
+... .+|+..+
T Consensus 137 l~~~-------~iPvV~~ 147 (339)
T 3h5o_A 137 LSQH-------ALPVVYM 147 (339)
T ss_dssp HHHT-------TCCEEEE
T ss_pred HhcC-------CCCEEEE
Confidence 5443 5677666
No 75
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=77.99 E-value=12 Score=31.14 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCce-EEEEcCCchHHHHHHHHhcCccccccCCccEE
Q 022147 126 SKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGLLEREDWNDAIKVPLG 201 (302)
Q Consensus 126 ~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~-IVvvGGDGTl~evvngL~~~~~~~~~~~~plg 201 (302)
..+. ++....|+..|++|++.... .++...++++++...+.+. |.++||.+-|--++-++.. .|+.
T Consensus 24 ~~v~-~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~---------~PVI 93 (170)
T 1xmp_A 24 WETM-KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTN---------LPVI 93 (170)
T ss_dssp HHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTCC---------SCEE
T ss_pred HHHH-HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccC---------CCEE
Confidence 3344 57888899999999987763 4456667777766555664 6678999999999988853 4666
Q ss_pred EecCCCh
Q 022147 202 VVPAGTG 208 (302)
Q Consensus 202 iIP~GTg 208 (302)
-+|.-++
T Consensus 94 gVP~~~~ 100 (170)
T 1xmp_A 94 GVPVQSK 100 (170)
T ss_dssp EEEECCT
T ss_pred EeeCCCC
Confidence 6777554
No 76
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=77.97 E-value=12 Score=33.15 Aligned_cols=88 Identities=13% Similarity=0.203 Sum_probs=52.7
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
++.+++.+++...+. .-...++ +.++..+++.|+.+.+..+.... ...++.+.+...++|+||+.+.+.+- +.+..
T Consensus 58 ~~~~~Ig~i~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~ 134 (332)
T 2hsg_A 58 KKTTTVGVIIPDISN-IFYAELA-RGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEE 134 (332)
T ss_dssp C-CCEEEEEEC--CC-SHHHHHH-HHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHH
T ss_pred CCCCEEEEEeCCCCC-cHHHHHH-HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHH
Confidence 355677777743322 2223333 57778888889888776654322 22345666666789999999887653 55665
Q ss_pred HhcCccccccCCccEEEec
Q 022147 186 LLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP 204 (302)
+... .+|+..+-
T Consensus 135 l~~~-------~iPvV~~~ 146 (332)
T 2hsg_A 135 LKKS-------PVPVVLAA 146 (332)
T ss_dssp HTTS-------SSCEEEES
T ss_pred HHhC-------CCCEEEEc
Confidence 5432 56766653
No 77
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=77.79 E-value=12 Score=32.29 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=42.7
Q ss_pred CCCcEEEEEEcCCCCC-CchhhhHHHHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGK-KIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~-~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
++.+.+.|++...... .-...+ .+.++..+++.|+.+.+..+....+ ..++.+.+...++|+||+++.+..- +.++
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~ 83 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQM-VFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND-PRVR 83 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHH-HHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC-HHHH
T ss_pred CCCCEEEEEecCCccccHHHHHH-HHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc-HHHH
Confidence 4556677777543321 112222 2466667777777766655543322 2334444444678888888765432 4455
Q ss_pred HHhcC
Q 022147 185 GLLER 189 (302)
Q Consensus 185 gL~~~ 189 (302)
.+...
T Consensus 84 ~l~~~ 88 (288)
T 3gv0_A 84 FMTER 88 (288)
T ss_dssp HHHHT
T ss_pred HHhhC
Confidence 55443
No 78
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=77.67 E-value=3.5 Score=37.85 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 156 ~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.++++.+...+.|.++++|||||+.-+ +.|.+. .+|+.-||.=--||+..
T Consensus 83 ~~~~~~l~~~~Id~L~~IGGdgS~~~a-~~l~~~-------~i~vigiPkTIDNDl~~ 132 (319)
T 4a3s_A 83 EKGIANLKKLGIEGLVVIGGDGSYMGA-KKLTEH-------GFPCVGVPGTIDNDIPG 132 (319)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTHHHHH-HHHHHT-------TCCEEEEEEETTCCCTT
T ss_pred HHHHHHHHHcCCCEEEEeCCcHHHHHH-HHHhcc-------CCcEEEeeccccCCCCC
Confidence 345556666689999999999998754 556554 68999999988888864
No 79
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=77.19 E-value=15 Score=32.83 Aligned_cols=87 Identities=10% Similarity=0.147 Sum_probs=55.0
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
.+.+.+.+++...+.. -...++ +.+...+++.|+.+.+..+... +...++.+.+...++|+||+++.+.+- +.+..
T Consensus 68 ~~~~~Igvi~~~~~~~-~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~-~~~~~ 144 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNL-HFAQTA-QSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTE-QTIRL 144 (355)
T ss_dssp ---CEEEEEESCSBCH-HHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCH-HHHHH
T ss_pred CCCCEEEEEeCCCCch-HHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH-HHHHH
Confidence 3456677777543322 222333 5778888899998887766543 333456666666789999999987763 55666
Q ss_pred HhcCccccccCCccEEEe
Q 022147 186 LLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiI 203 (302)
+... .+|+..+
T Consensus 145 l~~~-------~iPvV~i 155 (355)
T 3e3m_A 145 LQRA-------SIPIVEI 155 (355)
T ss_dssp HHHC-------CSCEEEE
T ss_pred HHhC-------CCCEEEE
Confidence 6554 6777776
No 80
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=77.06 E-value=17 Score=30.59 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=58.6
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe---CCcchHHHHHHHhhcCCCce-EEEEcCCchHHHHHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGL 186 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T---~~~~~a~el~~~~~~~~~d~-IVvvGGDGTl~evvngL 186 (302)
++.||. |...-..+. ++....|+..|++|++... ..+++..++++++...+.++ |.++||.+-|--++-++
T Consensus 23 ~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 97 (182)
T 1u11_A 23 VVGIIM----GSQSDWETM-RHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAW 97 (182)
T ss_dssp SEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH
T ss_pred EEEEEE----CcHHHHHHH-HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHhc
Confidence 566665 333333344 5778889999999998776 34556667777766555664 66789999999999999
Q ss_pred hcCccccccCCccEEEecCCCh
Q 022147 187 LEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTg 208 (302)
.. .|+.-+|.-++
T Consensus 98 t~---------~PVIgVP~~~~ 110 (182)
T 1u11_A 98 TR---------LPVLGVPVESR 110 (182)
T ss_dssp CS---------SCEEEEEECCT
T ss_pred cC---------CCEEEeeCCCC
Confidence 54 46666776554
No 81
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=76.89 E-value=2.5 Score=41.16 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=56.5
Q ss_pred cEEEEEEcCCCCCC-----chhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 110 KRLYIFVNPFGGKK-----IASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 110 ~r~~vivNP~sG~~-----~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
.+++-|.|-..|=- +-..+-.+.+..++..-|- +.-|.+ ..+..++++.+...+.|.+|++|||||+.-+.
T Consensus 130 ~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGT---iLGTsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~ 206 (487)
T 2hig_A 130 KRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGT---ILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGAL 206 (487)
T ss_dssp SEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSC---SSCCCCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHH
T ss_pred cEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCC---eeccCCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHH
Confidence 36788877766652 1111111345555554441 111111 12234666777777899999999999987443
Q ss_pred HHHhcCccccccCCccEEEecCCChhhHH
Q 022147 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP~GTgN~~A 212 (302)
.|.+.- .+...++|+.-||.==-||+.
T Consensus 207 -~L~e~~-~~~g~~i~vVGIPkTIDNDl~ 233 (487)
T 2hig_A 207 -VISQEA-KRRGVDISVFGVPKTIDNDLS 233 (487)
T ss_dssp -HHHHHH-HHHTCCCEEEEEECCTTSSCC
T ss_pred -HHHHHH-HHhCCCceEEeccccccCCCC
Confidence 232110 011246899999998888886
No 82
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=76.84 E-value=19 Score=29.88 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=57.8
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCce-EEEEcCCchHHHHHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGL 186 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~-IVvvGGDGTl~evvngL 186 (302)
++.||. |...-..+. ++....|+..|+.|++.... .++...++++++...+.+. |+++|+.+-|--++-++
T Consensus 7 ~V~Iim----gS~SD~~v~-~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~ 81 (166)
T 3oow_A 7 QVGVIM----GSKSDWSTM-KECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAK 81 (166)
T ss_dssp EEEEEE----SSGGGHHHH-HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHT
T ss_pred eEEEEE----CcHHhHHHH-HHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhc
Confidence 455554 332323344 57888999999999987753 3455667777776556664 66789999999999988
Q ss_pred hcCccccccCCccEEEecCCCh
Q 022147 187 LEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTg 208 (302)
.. .|+.-+|.-++
T Consensus 82 t~---------~PVIgVP~~~~ 94 (166)
T 3oow_A 82 TT---------LPVLGVPVKSS 94 (166)
T ss_dssp CS---------SCEEEEECCCT
T ss_pred cC---------CCEEEeecCcC
Confidence 54 46666776554
No 83
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=76.59 E-value=17 Score=30.39 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=57.2
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCce-EEEEcCCchHHHHHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGL 186 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~-IVvvGGDGTl~evvngL 186 (302)
++.||. |...-..+. ++....|+..|++|++.... .+++..+++++...++.+. |+++|+.+-|--++-++
T Consensus 14 ~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 88 (174)
T 3kuu_A 14 KIAIVM----GSKSDWATM-QFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAK 88 (174)
T ss_dssp CEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHT
T ss_pred cEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhc
Confidence 566665 332323344 57888999999999987753 4555667777776566664 66779999999999988
Q ss_pred hcCccccccCCccEEEecCCC
Q 022147 187 LEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GT 207 (302)
.. .|+.-+|.-+
T Consensus 89 t~---------~PVIgVP~~~ 100 (174)
T 3kuu_A 89 TL---------VPVLGVPVQS 100 (174)
T ss_dssp CS---------SCEEEEEECC
T ss_pred cC---------CCEEEeeCCC
Confidence 54 4655566543
No 84
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=76.54 E-value=10 Score=33.51 Aligned_cols=90 Identities=6% Similarity=-0.047 Sum_probs=54.6
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCC--CceEEEEcCCch-HHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSK--YDGIVCVSGDGI-LVEV 182 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~--~d~IVvvGGDGT-l~ev 182 (302)
++.+++.+++...+. .-...+ .+.++..+++.|+++.+..+... ....+..+.+...+ +|+||+.+.|.. ..+.
T Consensus 3 ~~s~~Igvi~~~~~~-~~~~~~-~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 3 LGQTTLACSFRSLTN-PYYTAF-NKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CCCCEEEEEESCTTS-HHHHHH-HHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred CCccEEEEEecCCCc-HHHHHH-HHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 456678777753222 112223 35677788888998877766432 22234556655567 999999988764 3355
Q ss_pred HHHHhcCccccccCCccEEEecC
Q 022147 183 VNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP~ 205 (302)
++.+... .+|+..+-.
T Consensus 81 ~~~~~~~-------~iPvV~~~~ 96 (332)
T 2rjo_A 81 VEACSKA-------GAYVTTIWN 96 (332)
T ss_dssp HHHHHHH-------TCEEEEESC
T ss_pred HHHHHHC-------CCeEEEECC
Confidence 6655443 577766643
No 85
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=76.04 E-value=16 Score=30.41 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=57.1
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCce-EEEEcCCchHHHHHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGL 186 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~-IVvvGGDGTl~evvngL 186 (302)
++.||. |...-..+. ++....|+..|++|++.... .+++..+++++...++.+. |+++|+.+-|--++-++
T Consensus 8 ~V~Iim----gS~SD~~v~-~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 82 (169)
T 3trh_A 8 FVAILM----GSDSDLSTM-ETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAAH 82 (169)
T ss_dssp EEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHHT
T ss_pred cEEEEE----CcHHhHHHH-HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhc
Confidence 455554 332323344 57888999999999987753 4556677877776666664 66779999999999988
Q ss_pred hcCccccccCCccEEEecCCC
Q 022147 187 LEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GT 207 (302)
.. .|+.-+|.-+
T Consensus 83 t~---------~PVIgVP~~~ 94 (169)
T 3trh_A 83 TL---------KPVIGVPMAG 94 (169)
T ss_dssp CS---------SCEEEEECCC
T ss_pred CC---------CCEEEeecCC
Confidence 54 4665666643
No 86
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=75.77 E-value=16 Score=31.86 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=51.2
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
+..+|+.+|.+|... .+.... +.++..++++|+++.........+..+.++++. .++|+|++ ..|.+.-.++..+
T Consensus 138 Pg~~~I~~i~~~~~~--~~~~r~-~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~-~~~dai~~-~~D~~a~g~~~~l 212 (302)
T 2qh8_A 138 PNVKSIGVVYNPGEA--NAVSLM-ELLKLSAAKHGIKLVEATALKSADVQSATQAIA-EKSDVIYA-LIDNTVASAIEGM 212 (302)
T ss_dssp TTCCEEEEEECTTCH--HHHHHH-HHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHG-GGCSEEEE-CSCHHHHTTHHHH
T ss_pred CCCcEEEEEecCCCc--chHHHH-HHHHHHHHHcCCEEEEEecCChHHHHHHHHHHh-ccCCEEEE-CCcHhHHHHHHHH
Confidence 456899999998532 233333 567788899999877665555667777777775 46787665 6787765555444
Q ss_pred h
Q 022147 187 L 187 (302)
Q Consensus 187 ~ 187 (302)
.
T Consensus 213 ~ 213 (302)
T 2qh8_A 213 I 213 (302)
T ss_dssp H
T ss_pred H
Confidence 3
No 87
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=75.64 E-value=32 Score=30.83 Aligned_cols=77 Identities=10% Similarity=0.188 Sum_probs=51.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.+|+.+|..... .+.... +.++..|++.|+++..... ....+....++++...++|.|++++.|.....++..+
T Consensus 143 ~~~iaii~~~~~---~g~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~ 218 (392)
T 3lkb_A 143 GAKVALVVHPSP---FGRAPV-EDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDA 218 (392)
T ss_dssp TCEEEEEECSSH---HHHTTH-HHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCc---hhhhHH-HHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHH
Confidence 488999885422 223233 5677888888987643332 2223444556666667899999999998888888888
Q ss_pred hcC
Q 022147 187 LER 189 (302)
Q Consensus 187 ~~~ 189 (302)
.+.
T Consensus 219 ~~~ 221 (392)
T 3lkb_A 219 KRL 221 (392)
T ss_dssp HHT
T ss_pred HHc
Confidence 765
No 88
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=75.11 E-value=3.6 Score=43.19 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=42.5
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
+..++++.+...+.|.+|++|||||+.- ++.|.+....-....+|+..||.=--||+..+
T Consensus 676 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gT 735 (989)
T 3opy_A 676 DMGTVAYYFQQYKFDGLIIIGGFEAFTA-LYELDAARAQYPIFNIPMCCLPATVSNNVPGT 735 (989)
T ss_dssp GHHHHHHHHHHHTCSEEEEEESHHHHHH-HHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTC
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHH-HHHHHHHHhhCCCcCCcEEeccccccCCCCCC
Confidence 4556777777778999999999999854 44554421111123689999999989998643
No 89
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=75.11 E-value=20 Score=31.50 Aligned_cols=84 Identities=13% Similarity=0.022 Sum_probs=51.9
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEE--EEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v--~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+|+.+|... ...+.... +.++..|+++|+++.. .......+....++++...++|.|++++-|.....+++.
T Consensus 134 g~~~ia~i~~~---~~~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~ 209 (362)
T 3snr_A 134 NVKTVGYIGYS---DSYGDLWF-NDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQTT 209 (362)
T ss_dssp TCCEEEEEEES---SHHHHHHH-HHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHH
T ss_pred CCCEEEEEecC---chHHHHHH-HHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 45788888532 12233333 5778889999987532 222223333444555555678999998878888888888
Q ss_pred HhcCccccccCCccE
Q 022147 186 LLEREDWNDAIKVPL 200 (302)
Q Consensus 186 L~~~~~~~~~~~~pl 200 (302)
+.+.. .++|+
T Consensus 210 ~~~~g-----~~~p~ 219 (362)
T 3snr_A 210 LRERG-----YNGLI 219 (362)
T ss_dssp HHHTT-----CCSEE
T ss_pred HHHcC-----CCccE
Confidence 87653 35565
No 90
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=75.03 E-value=29 Score=29.07 Aligned_cols=66 Identities=5% Similarity=0.047 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.+|+.++-.+.--.+ . +.+..+| +++++.+.-++.+++.+..+++...+++.|| ||++..+.+..+
T Consensus 94 ~~kIavvg~~~~~~~-----~-~~~~~ll---~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvV---G~~~~~~~A~~~ 159 (196)
T 2q5c_A 94 GNELALIAYKHSIVD-----K-HEIEAML---GVKIKEFLFSSEDEITTLISKVKTENIKIVV---SGKTVTDEAIKQ 159 (196)
T ss_dssp CSEEEEEEESSCSSC-----H-HHHHHHH---TCEEEEEEECSGGGHHHHHHHHHHTTCCEEE---ECHHHHHHHHHT
T ss_pred CCcEEEEeCcchhhH-----H-HHHHHHh---CCceEEEEeCCHHHHHHHHHHHHHCCCeEEE---CCHHHHHHHHHc
Confidence 358888876544322 2 3566666 5678888889999999999999888999876 588877777654
No 91
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=74.99 E-value=11 Score=32.07 Aligned_cols=89 Identities=9% Similarity=0.190 Sum_probs=53.1
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHHHHH-
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVN- 184 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~evvn- 184 (302)
++.+++.+++...+ ..-...++ +.+...+++.|+.+.+..+.... ...++.+.+...++|+||+.+.| .+.+.
T Consensus 6 ~~~~~Ig~i~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~ 80 (277)
T 3e61_A 6 RKSKLIGLLLPDMS-NPFFTLIA-RGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFN---ENIIEN 80 (277)
T ss_dssp ----CEEEEESCTT-SHHHHHHH-HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHH
T ss_pred CCCCEEEEEECCCC-CHHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHH
Confidence 34566777774332 22223333 57778888899988887765432 23355666666789999998844 45566
Q ss_pred HHhcCccccccCCccEEEecCCC
Q 022147 185 GLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~GT 207 (302)
.+... .+|+..+-...
T Consensus 81 ~l~~~-------~iPvV~~~~~~ 96 (277)
T 3e61_A 81 TLTDH-------HIPFVFIDRIN 96 (277)
T ss_dssp HHHHC--------CCEEEGGGCC
T ss_pred HHHcC-------CCCEEEEeccC
Confidence 66554 67777765443
No 92
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=74.86 E-value=9.3 Score=33.73 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=51.6
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE-eCC-cchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNG 185 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~-T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvng 185 (302)
.+++.+++ |..+..-... +.+.++..+++.|+++.+.. ++. +....+.++.+...++|+||+.+-|.+ +.+++..
T Consensus 3 ~~~Igvi~-~~~~~~~~~~-~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~ 80 (316)
T 1tjy_A 3 AERIAFIP-KLVGVGFFTS-GGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKR 80 (316)
T ss_dssp CCEEEEEC-SSSSSHHHHH-HHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHH
T ss_pred CCEEEEEe-CCCCChHHHH-HHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 35666665 4433322222 23566777888887766542 222 222234556666678999999998875 3566766
Q ss_pred HhcCccccccCCccEEEec
Q 022147 186 LLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP 204 (302)
+... .+|+..+-
T Consensus 81 a~~~-------gipvV~~d 92 (316)
T 1tjy_A 81 AMQR-------GVKILTWD 92 (316)
T ss_dssp HHHT-------TCEEEEES
T ss_pred HHHC-------cCEEEEec
Confidence 6554 67776664
No 93
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=74.63 E-value=12 Score=32.69 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=52.9
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL 186 (302)
+.++.+++.. .+..-...++ +.++..+++.|+.+.+..+... ....+..+.+...++|+||+.+.|.. +.+.+..+
T Consensus 2 ~~~Ig~i~~~-~~~~~~~~~~-~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 2 PLTVGFSQVG-SESGWRAAET-NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CCEEEEEECC-CCSHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred CeEEEEEeCC-CCCHHHHHHH-HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 3456666543 3322222232 5677788888988877665432 22334556665568999999988764 35666666
Q ss_pred hcCccccccCCccEEEec
Q 022147 187 LEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP 204 (302)
... .+|+..+-
T Consensus 80 ~~~-------~iPvV~~~ 90 (306)
T 2vk2_A 80 KDA-------EIPVFLLD 90 (306)
T ss_dssp HHT-------TCCEEEES
T ss_pred HHC-------CCCEEEec
Confidence 543 67776664
No 94
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=74.52 E-value=16 Score=32.20 Aligned_cols=87 Identities=14% Similarity=0.201 Sum_probs=58.5
Q ss_pred HHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE
Q 022147 94 LWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (302)
Q Consensus 94 ~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv 173 (302)
...+.+++.+ +..+++.||+||.... +. ...+.++..+...|+++.........+..+..+.+. .+.|.|+ +
T Consensus 128 ~~l~l~~~l~---P~~k~vgvi~~~~~~~--s~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~-~~~d~i~-~ 199 (302)
T 3lkv_A 128 QHVELIKEIL---PNVKSIGVVYNPGEAN--AV-SLMELLKLSAAKHGIKLVEATALKSADVQSATQAIA-EKSDVIY-A 199 (302)
T ss_dssp HHHHHHHHHS---TTCCEEEEEECTTCHH--HH-HHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHH-TTCSEEE-E
T ss_pred HHHHHHHHhC---CCCCEEEEEeCCCccc--HH-HHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhcc-CCeeEEE-E
Confidence 3444444443 5678999999985432 22 223578888889999887776677777777666664 4677654 5
Q ss_pred cCCchHHHHHHHHhc
Q 022147 174 SGDGILVEVVNGLLE 188 (302)
Q Consensus 174 GGDGTl~evvngL~~ 188 (302)
..|+++......+..
T Consensus 200 ~~d~~~~~~~~~i~~ 214 (302)
T 3lkv_A 200 LIDNTVASAIEGMIV 214 (302)
T ss_dssp CSCHHHHHTHHHHHH
T ss_pred eCCcchhhHHHHHHH
Confidence 679998777666543
No 95
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=74.36 E-value=7.1 Score=33.53 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=51.1
Q ss_pred CCcEEEEEEcCCCC-CCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCceEEEEcCCchH-HHH
Q 022147 108 RPKRLYIFVNPFGG-KKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEV 182 (302)
Q Consensus 108 r~~r~~vivNP~sG-~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~IVvvGGDGTl-~ev 182 (302)
+.+++.+++...+. ..-...+ .+.++..+++.|+++.+..+. ......+..+.+...++|+||+.+.|..- .+.
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~ 82 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVL-VEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDA 82 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHH-HHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHH
T ss_pred CCcEEEEEeCCCCCCchHHHHH-HHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHH
Confidence 45667766643221 2222223 356677788888877665552 22333455666666789999999887642 244
Q ss_pred HHHHhcCccccccCCccEEEecC
Q 022147 183 VNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP~ 205 (302)
+..+.. .++|+..+-.
T Consensus 83 ~~~~~~-------~~iPvV~~~~ 98 (289)
T 3brs_A 83 AKEIKD-------AGIKLIVIDS 98 (289)
T ss_dssp HTTTGG-------GTCEEEEESS
T ss_pred HHHHHH-------CCCcEEEECC
Confidence 444332 2678766643
No 96
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=74.24 E-value=19 Score=30.16 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=57.4
Q ss_pred EEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCce-EEEEcCCchHHHHHHHHh
Q 022147 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~-IVvvGGDGTl~evvngL~ 187 (302)
+.||. |...-..+. ++....|+.-|++|++.... .++...+++++...+++++ |.++||.+-|--++-++-
T Consensus 25 V~Iim----GS~SD~~v~-~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T 99 (181)
T 4b4k_A 25 VGVIM----GSTSDWETM-KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 99 (181)
T ss_dssp EEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTC
T ss_pred EEEEE----CCHhHHHHH-HHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcC
Confidence 55555 433334444 57888999999999887653 4555667888877667775 567899999998888763
Q ss_pred cCccccccCCccEEEecCCC
Q 022147 188 EREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GT 207 (302)
..|+.-+|.-+
T Consensus 100 ---------~~PVIGVPv~s 110 (181)
T 4b4k_A 100 ---------NLPVIGVPVQS 110 (181)
T ss_dssp ---------CSCEEEEECCC
T ss_pred ---------CCCEEEEecCC
Confidence 45666677743
No 97
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=74.19 E-value=26 Score=30.94 Aligned_cols=88 Identities=10% Similarity=0.161 Sum_probs=51.6
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
.+.+++.+++... ...-...++ +.++..+++.|+.+.+..+... +...++.+.+...++|+||+.+.+.+ .+.+..
T Consensus 56 ~~~~~Igvi~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 132 (340)
T 1qpz_A 56 NHTKSIGLLATSS-EAAYFAEII-EAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP-EPLLAM 132 (340)
T ss_dssp TCCSEEEEEESCS-CSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CCCCEEEEEeCCC-CChHHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-hHHHHH
Confidence 4566788887433 222222333 5677788888988777655432 22234556666678999999987754 233444
Q ss_pred HhcCccccccCCccEEEe
Q 022147 186 LLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiI 203 (302)
+... ..+|+..+
T Consensus 133 l~~~------~~iPvV~~ 144 (340)
T 1qpz_A 133 LEEY------RHIPMVVM 144 (340)
T ss_dssp HHTT------TTSCEEEE
T ss_pred HHhh------CCCCEEEE
Confidence 4321 15666555
No 98
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=74.01 E-value=3.6 Score=37.69 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=43.5
Q ss_pred cEEEEEEcCCCCCCc-hhhhHHHHHHHHHHhcCCcEEEEEeCC----------cchHHHHHHHhhcCCCceEEEE-cCCc
Q 022147 110 KRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVCV-SGDG 177 (302)
Q Consensus 110 ~r~~vivNP~sG~~~-a~~~~~~~v~~~L~~ag~~~~v~~T~~----------~~~a~el~~~~~~~~~d~IVvv-GGDG 177 (302)
---.-|+-|.++-.. ....+ +.....|+..|+++.+-.+-. ...|.++.+.+.....++|+|+ ||+|
T Consensus 12 GD~I~ivaPSs~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 90 (327)
T 4h1h_A 12 GDEIRIIAPSRSIGIMADNQV-EIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFN 90 (327)
T ss_dssp TCEEEEECSSSCGGGSCHHHH-HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSC
T ss_pred CCEEEEEeCCCCcCccCHHHH-HHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCchh
Confidence 334667888887432 23334 456678899888765533221 1234566666666677888876 9999
Q ss_pred hH
Q 022147 178 IL 179 (302)
Q Consensus 178 Tl 179 (302)
+.
T Consensus 91 ~~ 92 (327)
T 4h1h_A 91 SN 92 (327)
T ss_dssp GG
T ss_pred HH
Confidence 84
No 99
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=73.74 E-value=11 Score=32.66 Aligned_cols=87 Identities=8% Similarity=0.130 Sum_probs=53.9
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvng 185 (302)
.++.+++ |.....--..+ .+.++..+++.|+++.+..+. ......+..+.+...++|+||+.+-|.. +.+.++.
T Consensus 4 ~~Igvi~-~~~~~~~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~ 81 (297)
T 3rot_A 4 DKYYLIT-HGSQDPYWTSL-FQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQR 81 (297)
T ss_dssp CEEEEEC-SCCCSHHHHHH-HHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHH
T ss_pred EEEEEEe-cCCCCchHHHH-HHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 3455554 43322222333 357778888889888777655 3334445666666678999999888765 3555666
Q ss_pred HhcCccccccCCccEEEecC
Q 022147 186 LLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (302)
+... .+|+..+-.
T Consensus 82 ~~~~-------giPvV~~~~ 94 (297)
T 3rot_A 82 ANKL-------NIPVIAVDT 94 (297)
T ss_dssp HHHH-------TCCEEEESC
T ss_pred HHHC-------CCCEEEEcC
Confidence 6554 677766643
No 100
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=73.70 E-value=1.2 Score=45.03 Aligned_cols=89 Identities=13% Similarity=0.214 Sum_probs=55.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCC-c-----------
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD-G----------- 177 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGD-G----------- 177 (302)
+|+.|++.+..|-... + + ..+...|+++|+.++++-.+....+-....+.+...||+||+.||- |
T Consensus 530 ~kVaIL~a~~dGfe~~-E-~-~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~ 606 (688)
T 2iuf_A 530 LKVGLLASVNKPASIA-Q-G-AKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEP 606 (688)
T ss_dssp CEEEEECCTTCHHHHH-H-H-HHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCC
T ss_pred CEEEEEecCCCCCcHH-H-H-HHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccc
Confidence 6899988742332222 2 2 4678899999999988876532211111112223469999999993 3
Q ss_pred -------------hHHHHHHHHhcCccccccCCccEEEecCCCh
Q 022147 178 -------------ILVEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 178 -------------Tl~evvngL~~~~~~~~~~~~plgiIP~GTg 208 (302)
.+.+++...... ..|||.|-.|..
T Consensus 607 ~~~~~~~~L~~~~~~~~~v~~~~~~-------gKpIaAIc~ap~ 643 (688)
T 2iuf_A 607 SAGSGASTLYPAGRPLNILLDAFRF-------GKTVGALGSGSD 643 (688)
T ss_dssp CTTSCCCSSSCTTHHHHHHHHHHHH-------TCEEEEEGGGHH
T ss_pred ccccchhhcccChHHHHHHHHHHHc-------CCEEEEECchHH
Confidence 355666665554 678999988764
No 101
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=73.58 E-value=19 Score=31.46 Aligned_cols=89 Identities=12% Similarity=0.028 Sum_probs=57.6
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCch-HHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL 186 (302)
.+++.|++...+.. --..+ .+.++..+++.|+++.+..+..... ..+..+.+...++|+||+.+-|.. ..+.++.+
T Consensus 3 ~~~Igvi~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 3 KGSVGIAMPTKSSA-RWIDD-GNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CCEEEEEECCSSST-HHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred CcEEEEEeCCCcch-HHHHH-HHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 45677777544332 22223 3578888899999887776654322 234555555568999999999864 46677777
Q ss_pred hcCccccccCCccEEEecCC
Q 022147 187 LEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~G 206 (302)
... .+|+..+-..
T Consensus 81 ~~~-------giPvV~~~~~ 93 (330)
T 3uug_A 81 GEQ-------GIKVIAYDRL 93 (330)
T ss_dssp HHT-------TCEEEEESSC
T ss_pred HHC-------CCCEEEECCC
Confidence 655 6787776543
No 102
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=73.54 E-value=14 Score=27.09 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=39.3
Q ss_pred HHhhhhcc-CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhh
Q 022147 99 LRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (302)
Q Consensus 99 l~~~l~~~-~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~ 163 (302)
|++.+.+. ...+.+.||+|-.|.. . . .++...-.+.|+.|++..++.+++..+-++++.
T Consensus 40 irdiiksmkdngkplvvfvngasqn--d---v-nefqneakkegvsydvlkstdpeeltqrvrefl 99 (112)
T 2lnd_A 40 IRDIIKSMKDNGKPLVVFVNGASQN--D---V-NEFQNEAKKEGVSYDVLKSTDPEELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHTTCCSCEEEEECSCCHH--H---H-HHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEecCcccc--c---H-HHHHHHHHhcCcchhhhccCCHHHHHHHHHHHH
Confidence 33444433 3456789999954431 1 1 345555667799999999999998877776653
No 103
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=73.41 E-value=12 Score=32.67 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCchHH---------HHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 165 SKYDGIVCVSGDGILV---------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 165 ~~~d~IVvvGGDGTl~---------evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
..||.|++.||-|... +++.....+ ..+|+.|=.|.. .++.
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~-------gk~iaaIC~G~~-~La~ 146 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYAN-------GGVIAAICHGPL-LFDG 146 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHT-------TCEEEEETTGGG-GGTT
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHc-------CCEEEEECHHHH-HHHH
Confidence 4699999999999742 223333332 678999988873 3443
No 104
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=73.02 E-value=12 Score=32.25 Aligned_cols=57 Identities=14% Similarity=-0.014 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
+.++..+++.|+.+.+..+.. .....++.+.+...++|+||+.+.|.+ .+.+..+..
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~ 85 (287)
T 3bbl_A 28 SSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN-DPRVQFLLK 85 (287)
T ss_dssp HHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT-CHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCC-cHHHHHHHh
Confidence 566677777777665544332 222234556665567888888876643 244554543
No 105
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=73.02 E-value=27 Score=30.90 Aligned_cols=79 Identities=9% Similarity=-0.066 Sum_probs=52.0
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE-EeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~-~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
..+++.+|+.+... .+... .+.++..|++.|+++... ......+....++++...++|.|++.+-|.....++..+
T Consensus 148 g~~~iaii~~~~~~--~~~~~-~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 224 (366)
T 3td9_A 148 GAKRVVVFTDVEQD--YSVGL-SNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQA 224 (366)
T ss_dssp CCCEEEEEEETTCH--HHHHH-HHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCc--HHHHH-HHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHH
Confidence 45789999754322 22222 357788889999875432 222333444556666667899999988888888888888
Q ss_pred hcC
Q 022147 187 LER 189 (302)
Q Consensus 187 ~~~ 189 (302)
.+.
T Consensus 225 ~~~ 227 (366)
T 3td9_A 225 RQL 227 (366)
T ss_dssp HHT
T ss_pred HHc
Confidence 665
No 106
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=72.86 E-value=17 Score=29.85 Aligned_cols=69 Identities=13% Similarity=0.244 Sum_probs=43.5
Q ss_pred hhccCCCcEEEEEEcCC--------------CCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc---C
Q 022147 103 IDSFGRPKRLYIFVNPF--------------GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---S 165 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~--------------sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~---~ 165 (302)
++-...|+.+.+|+|-. =....+...=.+.++.+|+..|++++++.--...+..+..+++.. .
T Consensus 16 Y~m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~dh~ 95 (164)
T 1qtn_A 16 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHS 95 (164)
T ss_dssp CCCCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCT
T ss_pred ccCCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhhcc
Confidence 43334567788888742 012222223346889999999999988887777777776666543 2
Q ss_pred CCceEE
Q 022147 166 KYDGIV 171 (302)
Q Consensus 166 ~~d~IV 171 (302)
.+|.+|
T Consensus 96 ~~dc~v 101 (164)
T 1qtn_A 96 NMDCFI 101 (164)
T ss_dssp TCSCEE
T ss_pred CCCEEE
Confidence 456443
No 107
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=72.65 E-value=14 Score=30.87 Aligned_cols=69 Identities=9% Similarity=0.010 Sum_probs=43.9
Q ss_pred hhccCCCcEEEEEEcCCC-------CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcC---CCceEE
Q 022147 103 IDSFGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS---KYDGIV 171 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~s-------G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~---~~d~IV 171 (302)
++-..+|+.+.+|+|-.. ..+.+...=.+.++.+|+..|++++++.--...+..+..+++... .+|.+|
T Consensus 37 Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~dc~v 115 (179)
T 3p45_A 37 YKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFV 115 (179)
T ss_dssp CCCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTBSCEE
T ss_pred CCCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHhhhhcCCCCEEE
Confidence 333346677888886532 122232233468899999999999988877777777777666532 345443
No 108
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=72.61 E-value=13 Score=31.88 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=54.5
Q ss_pred CCcEEEEEEcCCC---CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc---------------hHHHHHH---------
Q 022147 108 RPKRLYIFVNPFG---GKKIASKIFLDDVKPLLEDANIQFTVQETTQQL---------------HAKEIVK--------- 160 (302)
Q Consensus 108 r~~r~~vivNP~s---G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~---------------~a~el~~--------- 160 (302)
.++|++|++-..+ |- ....+. .....|+.+|+++++.-.+... ....+..
T Consensus 5 ~m~kv~ill~~~~~~~g~-~~~E~~--~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~ 81 (232)
T 1vhq_A 5 TMKKIGVILSGCGVYDGS-EIHEAV--LTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIR 81 (232)
T ss_dssp -CCEEEEECCSBSTTTSB-CHHHHH--HHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCE
T ss_pred cCCeEEEEEccCCCCCCe-eHHHHH--HHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCC
Confidence 3678888876111 21 112111 3345688899988877543210 1111111
Q ss_pred ---HhhcCCCceEEEEcCCchH---------------HH----HHHHHhcCccccccCCccEEEecCCChhhHHHhh
Q 022147 161 ---VLDLSKYDGIVCVSGDGIL---------------VE----VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 161 ---~~~~~~~d~IVvvGGDGTl---------------~e----vvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
+++..+||.|++.||-|.. ++ .+....++ ..+|+-|=.|+. .+|+.|
T Consensus 82 ~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------gk~vaaIC~G~~-~La~aL 150 (232)
T 1vhq_A 82 PLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQA-------GKPLGFMCIAPA-MLPKIF 150 (232)
T ss_dssp EGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHT-------TCCEEEETTGGG-GHHHHC
T ss_pred CHHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHc-------CCEEEEECHHHH-HHHHHh
Confidence 1112469999999998862 22 23333332 679999999985 677775
No 109
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=72.09 E-value=6.6 Score=34.14 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=48.5
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCch
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
++.+.+.|++...+...-...++ +.++..+++.|+.+.+..+... +...++.+.+...++|+||+++.+..
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIV-RGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRR 82 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 46678888886554333331344 6888999999998887776543 23345666666678999999987753
No 110
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=71.99 E-value=11 Score=31.43 Aligned_cols=68 Identities=10% Similarity=0.192 Sum_probs=41.0
Q ss_pred cEEEEEEcCCC----CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc----CCCce-EEEEcCCc
Q 022147 110 KRLYIFVNPFG----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL----SKYDG-IVCVSGDG 177 (302)
Q Consensus 110 ~r~~vivNP~s----G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~----~~~d~-IVvvGGDG 177 (302)
+++.+|||-.. ....+...=.+.++..|+..|++++++.--...+..+..+++.. ..+|. ++++=|-|
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG 119 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHG 119 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCB
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCC
Confidence 56666665442 12222222236889999999999988877777777777666532 24553 33333444
No 111
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=71.82 E-value=5.7 Score=41.61 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=42.2
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
+..++++.+...+.|.+|++|||||+.-+ +.|.+....-....+|+.-||.=--||+..+
T Consensus 650 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gT 709 (941)
T 3opy_B 650 DIGMIAYFFEKYGFDGLILVGGFEAFISL-HQLERARINYPSLRIPLVLIPATISNNVPGT 709 (941)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESHHHHHHH-HHHHHGGGTCGGGCSCEEEEEBCSSCCCTTC
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHH-HHHHHHHHhcCccCCcEEeeeccccCCCCCC
Confidence 34567777777899999999999998654 4443321111123699999999999998753
No 112
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=71.09 E-value=7.6 Score=33.74 Aligned_cols=90 Identities=8% Similarity=0.130 Sum_probs=53.5
Q ss_pred CCCcEEEEEEc----CCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 107 GRPKRLYIFVN----PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 107 ~r~~r~~vivN----P~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
++.+.+.|++. |.....-...++ +.++..+++.|+.+.+..+....+ ..++.+.+...++|+||+++.+.+ .+
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~ 82 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVL-LGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-DP 82 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHH-HHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-CH
T ss_pred CCCcEEEEEeecCCcccccChHHHHHH-HHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-hH
Confidence 45677888873 211111122333 577788888888776655543222 234556666678999999887754 25
Q ss_pred HHHHHhcCccccccCCccEEEecC
Q 022147 182 VVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiIP~ 205 (302)
.+..+... .+|+..+-.
T Consensus 83 ~~~~l~~~-------~iPvV~i~~ 99 (295)
T 3hcw_A 83 IKQMLIDE-------SMPFIVIGK 99 (295)
T ss_dssp HHHHHHHT-------TCCEEEESC
T ss_pred HHHHHHhC-------CCCEEEECC
Confidence 55555544 677766643
No 113
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=70.74 E-value=54 Score=28.68 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=46.1
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eC---CcchHHHHHHHhhcCCCceEEEEcCCch-HHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT---QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEV 182 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~---~~~~a~el~~~~~~~~~d~IVvvGGDGT-l~ev 182 (302)
.+++.+++.......-...+. +.++..+++.|+.+.+.. +. ......+..+.+...++|+||+ .+|.. ..+.
T Consensus 43 ~~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi-~~~~~~~~~~ 120 (342)
T 1jx6_A 43 PIKISVVYPGQQVSDYWVRNI-ASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIF-TLDTTRHRKF 120 (342)
T ss_dssp CEEEEEEECCCSSCCHHHHHH-HHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEE-CCSSSTTHHH
T ss_pred ceEEEEEecCCcccHHHHHHH-HHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEE-eCChHhHHHH
Confidence 345666664312222222333 577788888998877663 43 2333345566666678999999 66654 3566
Q ss_pred HHHHhcC
Q 022147 183 VNGLLER 189 (302)
Q Consensus 183 vngL~~~ 189 (302)
+..+...
T Consensus 121 ~~~~~~~ 127 (342)
T 1jx6_A 121 VEHVLDS 127 (342)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6666543
No 114
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=70.67 E-value=10 Score=32.73 Aligned_cols=65 Identities=9% Similarity=0.011 Sum_probs=37.0
Q ss_pred cCCCcEEEEEE-cCCCC---CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE
Q 022147 106 FGRPKRLYIFV-NPFGG---KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (302)
Q Consensus 106 ~~r~~r~~viv-NP~sG---~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv 173 (302)
...++|+++|. .|.-+ .+...+ +.+.+...++..|.++++..-....+..+..+++. ..|.||+.
T Consensus 22 ~~~M~kiLiI~gsp~~~~s~~s~n~~-L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~--~aD~iv~~ 90 (218)
T 3rpe_A 22 SNAMSNVLIINAMKEFAHSKGALNLT-LTNVAADFLRESGHQVKITTVDQGYDIESEIENYL--WADTIIYQ 90 (218)
T ss_dssp --CCCCEEEEECCCCBTTBCSHHHHH-HHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHH--HCSEEEEE
T ss_pred cccCcceEEEEeCCCcccCCChHHHH-HHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHH--hCCEEEEE
Confidence 34567887777 77532 222233 34678888888898888776554334444444433 35655544
No 115
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=70.63 E-value=28 Score=28.61 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcC-CCce-EEEEcCCchHHHHHHHHhcCccccccCCccE
Q 022147 126 SKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLS-KYDG-IVCVSGDGILVEVVNGLLEREDWNDAIKVPL 200 (302)
Q Consensus 126 ~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~-~~d~-IVvvGGDGTl~evvngL~~~~~~~~~~~~pl 200 (302)
..+. ++....|+..|++|++.... .+++..++++++... +.+. |+++|+.+-|--++-++.. .|+
T Consensus 15 ~~v~-~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~---------~PV 84 (159)
T 3rg8_A 15 MGHA-EKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVK---------GAT 84 (159)
T ss_dssp HHHH-HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHSS---------SCE
T ss_pred HHHH-HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhccC---------CCE
Confidence 3344 57888999999999987753 445566777777643 4664 6667999999999999854 466
Q ss_pred EEecC
Q 022147 201 GVVPA 205 (302)
Q Consensus 201 giIP~ 205 (302)
.-+|.
T Consensus 85 IgVP~ 89 (159)
T 3rg8_A 85 IACPP 89 (159)
T ss_dssp EECCC
T ss_pred EEeeC
Confidence 56664
No 116
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=70.50 E-value=21 Score=32.24 Aligned_cols=123 Identities=11% Similarity=0.094 Sum_probs=69.6
Q ss_pred HHHHHHHH-HHHhhhhccCCC--cEEEEEEcCCC----CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHh
Q 022147 90 DSKRLWCE-KLRDFIDSFGRP--KRLYIFVNPFG----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL 162 (302)
Q Consensus 90 ~~~~~w~~-~l~~~l~~~~r~--~r~~vivNP~s----G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~ 162 (302)
+..+.+.+ .-.+.+....++ +|+.+|||-.. ....+...=.+.+...|+..|++++++.--...+..+..+++
T Consensus 37 ~~~~~~~~~~~~e~Y~m~~~~~~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f 116 (302)
T 3e4c_A 37 EEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAF 116 (302)
T ss_dssp HHHHHHHHHHGGGBCCCCCTTTCCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccCCCCCCccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHH
Confidence 34443333 333345433333 56666665442 112222222368899999999999888877777777777765
Q ss_pred hc----CCCceEEE-----------EcCCch--------HHHHHHHHhcCccccccCCccEEEecCCChhhHH
Q 022147 163 DL----SKYDGIVC-----------VSGDGI--------LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (302)
Q Consensus 163 ~~----~~~d~IVv-----------vGGDGT--------l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A 212 (302)
.. .++|.+|+ .|=||. +.++++.+....-..-..++-|-+|-+=-||.+.
T Consensus 117 ~~~~dh~~~d~~vv~~lsHG~~~~i~g~D~~~~~~~~v~l~~I~~~F~~~~CpsL~gKPKlffIQACRG~~~~ 189 (302)
T 3e4c_A 117 AHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQAARGDSPG 189 (302)
T ss_dssp HTCGGGGGCSCEEEEEEEEEETTEEECTTCCSSSCCEECHHHHHHHTSTTTCGGGTTSCEEEEEEEECSSSCC
T ss_pred HhhhccCCCCEEEEEEeccCcCCeEEeecccccCCcEEEHHHHHHHHhhhcchhhcCCccEEEEECCCCCCCC
Confidence 42 34665442 355652 6777776654321111235668888776667664
No 117
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=70.17 E-value=18 Score=28.96 Aligned_cols=87 Identities=9% Similarity=0.149 Sum_probs=52.4
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC--CchHH--HHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG--DGILV--EVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG--DGTl~--evvn 184 (302)
.++++|++-... |..+++. +.+..-|...|++++++......+..++..++. .+|.||+..- .|.+. .++.
T Consensus 4 ~~kv~IvY~S~~--GnT~~iA-~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~l~ 78 (159)
T 3fni_A 4 ETSIGVFYVSEY--GYSDRLA-QAIINGITKTGVGVDVVDLGAAVDLQELRELVG--RCTGLVIGMSPAASAASIQGALS 78 (159)
T ss_dssp CCEEEEEECTTS--TTHHHHH-HHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHHHHH
T ss_pred CCEEEEEEECCC--hHHHHHH-HHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHHHHH
Confidence 357888885544 4555554 678888888899888776654324556655554 5888777642 14354 4555
Q ss_pred HHhcCccccccCCccEEEec
Q 022147 185 GLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP 204 (302)
.|.... ....+++++-
T Consensus 79 ~l~~~~----~~~k~va~fg 94 (159)
T 3fni_A 79 TILGSV----NEKQAVGIFE 94 (159)
T ss_dssp HHHHHC----CTTSEEEEEC
T ss_pred HHHhhc----ccCCEEEEEE
Confidence 443321 1256777663
No 118
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=70.13 E-value=5.3 Score=40.99 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=41.9
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
+..++++.+...+.|.+|++|||||+.-+.. |.+.........+|+.-||.=--||+..+
T Consensus 477 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~-L~~~~~~~~~~~i~vvgiPkTIDNDl~gT 536 (762)
T 3o8l_A 477 SFEQISANITKFNIQGLVIIGGFEAYTGGLE-LMEGRKQFDELCIPFVVIPATVSNNVPGS 536 (762)
T ss_dssp GHHHHHHHHHHTTCCCEEEEESHHHHHHHHH-HHHHHHHCSTTCSCEEEEEBCTTCCCTTC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHHHhccccCCCEEeeccccCCCCCCC
Confidence 4556777787789999999999999876632 32210000113789999999999998743
No 119
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=70.08 E-value=4.1 Score=41.26 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHH-HHHHHhhcCCCceEEEEcCC-c---------
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK-EIVKVLDLSKYDGIVCVSGD-G--------- 177 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~-el~~~~~~~~~d~IVvvGGD-G--------- 177 (302)
.+|+.||+.. |......+ ..+...|+++|+.++++-.+.. +.. ..........||+||+.||- |
T Consensus 537 grKVaILvad--G~fE~~El--~~p~~aL~~aGa~V~vVsp~~g-~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d 611 (688)
T 3ej6_A 537 TLRVGVLSTT--KGGSLDKA--KALKEQLEKDGLKVTVIAEYLA-SGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMS 611 (688)
T ss_dssp TCEEEEECCS--SSSHHHHH--HHHHHHHHHTTCEEEEEESSCC-TTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCC
T ss_pred CCEEEEEccC--CCccHHHH--HHHHHHHHHCCCEEEEEeCCCC-CCcccCcccCChhcCcEEEECCCcccccccccchh
Confidence 3789999874 32232222 3677889999999998876542 220 01111223469999999993 3
Q ss_pred ------hHHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 178 ------ILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 178 ------Tl~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
-+.+++...+.. ..|||.|-.|-
T Consensus 612 ~Lr~~~~a~~fV~e~~~h-------gKpIAAIchgp 640 (688)
T 3ej6_A 612 PLFPAGRPSQILTDGYRW-------GKPVAAVGSAK 640 (688)
T ss_dssp TTSCTTHHHHHHHHHHHT-------TCCEEEEGGGH
T ss_pred hhccCHHHHHHHHHHHHc-------CCEEEEeCccH
Confidence 345666666655 67999987764
No 120
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=69.79 E-value=42 Score=29.82 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=39.5
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc--chHHHHHHHhhcCCCceEEEEcC
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ--LHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~--~~a~el~~~~~~~~~d~IVvvGG 175 (302)
.+.+.+.+++.... ..-...++ +.++..+++.|+.+.+..+... +...+..+.+...++|+||+++.
T Consensus 59 ~~~~~Igvi~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 59 KQSLLIGVATSSLA-LHAPSQIV-AAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp ---CEEEEEESCTT-SHHHHHHH-HHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CCCCEEEEEeCCCC-cccHHHHH-HHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 34566777774322 21222233 5677788888988877766542 22234566666678999999864
No 121
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=69.33 E-value=8.4 Score=30.00 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=48.4
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCC-CceEEEEc---CCc------hH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSK-YDGIVCVS---GDG------IL 179 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~-~d~IVvvG---GDG------Tl 179 (302)
|+++|++=.. .|..+++. +.+...+...|++++++.-..... .+... +|.||++. |.| .+
T Consensus 1 mki~iiy~S~--~Gnt~~~a-~~i~~~l~~~g~~v~~~~~~~~~~-------~~l~~~~d~ii~~~p~y~~g~~~~p~~~ 70 (147)
T 1f4p_A 1 PKALIVYGST--TGNTEYTA-ETIARELADAGYEVDSRDAASVEA-------GGLFEGFDLVLLGCSTWGDDSIELQDDF 70 (147)
T ss_dssp CEEEEEEECS--SSHHHHHH-HHHHHHHHHHTCEEEEEEGGGCCS-------TTTTTTCSEEEEEECEECSSSCEECTTT
T ss_pred CeEEEEEECC--cCHHHHHH-HHHHHHHHhcCCeeEEEehhhCCH-------HHhcCcCCEEEEEeCCCCCCCcCCChhH
Confidence 4677777443 45565544 688888888888877665432110 12346 88887763 334 34
Q ss_pred HHHHHHHhcCccccccCCccEEEecCCCh
Q 022147 180 VEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiIP~GTg 208 (302)
..+++.+... .....+++++-+|.+
T Consensus 71 ~~fl~~l~~~----~l~~k~~~v~~~g~~ 95 (147)
T 1f4p_A 71 IPLFDSLEET----GAQGRKVACFGCGDS 95 (147)
T ss_dssp HHHHHTGGGS----CCTTCEEEEEEEECT
T ss_pred HHHHHHHHhc----ccCCCEEEEEeecCC
Confidence 5555544321 122567777766544
No 122
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=69.10 E-value=21 Score=31.14 Aligned_cols=85 Identities=11% Similarity=0.074 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC--CcchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHh
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~--~~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~ 187 (302)
++.+++ |..+. -... +.+.++..+++.|+++.+.... ......+..+.+...++|+||+.+.|.. +.+.++.+.
T Consensus 3 ~Ig~i~-~~~~~-~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 79 (313)
T 2h3h_A 3 TIGVIG-KSVHP-YWSQ-VEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKAL 79 (313)
T ss_dssp EEEEEC-SCSSH-HHHH-HHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHH
T ss_pred EEEEEe-CCCcH-HHHH-HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHH
Confidence 455554 44443 2232 3356777788888877665422 2223344566666678999999888764 345666665
Q ss_pred cCccccccCCccEEEecC
Q 022147 188 EREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (302)
.. .+|+..+-.
T Consensus 80 ~~-------~iPvV~~~~ 90 (313)
T 2h3h_A 80 EM-------GIPVVTLDT 90 (313)
T ss_dssp HT-------TCCEEEESS
T ss_pred HC-------CCeEEEeCC
Confidence 43 677766543
No 123
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=69.07 E-value=35 Score=30.19 Aligned_cols=85 Identities=8% Similarity=0.061 Sum_probs=53.6
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+|+.+|... ...+.... +.++..|++.|+++.... .....+....++++...++|.|++.+.|.....+++.
T Consensus 150 g~~~ia~i~~~---~~~~~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~ 225 (375)
T 4evq_A 150 GLKKAVTVTWK---YAAGEEMV-SGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKD 225 (375)
T ss_dssp TCCEEEEEEES---SHHHHHHH-HHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHH
T ss_pred CCcEEEEEecC---chHHHHHH-HHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 46788888632 12233233 577788999998763222 2222334455555555578999998999888888888
Q ss_pred HhcCccccccCCccEE
Q 022147 186 LLEREDWNDAIKVPLG 201 (302)
Q Consensus 186 L~~~~~~~~~~~~plg 201 (302)
+.+.. .++|+.
T Consensus 226 ~~~~g-----~~vp~~ 236 (375)
T 4evq_A 226 YAAAN-----LGIPLW 236 (375)
T ss_dssp HHHTT-----CCCCEE
T ss_pred HHHcC-----CCceEE
Confidence 87653 346654
No 124
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=68.94 E-value=3.7 Score=34.20 Aligned_cols=95 Identities=12% Similarity=0.178 Sum_probs=53.6
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-----hHH-HH-----HHHhhcCCCceEEEEcC
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-----HAK-EI-----VKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-----~a~-el-----~~~~~~~~~d~IVvvGG 175 (302)
.+++|+.|++-|..- ...+ ......|+.+|+++++...+... +.. .+ ..++....+|.||+.||
T Consensus 21 ~~~~kV~ill~~g~~---~~e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG 95 (193)
T 1oi4_A 21 GLSKKIAVLITDEFE---DSEF--TSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG 95 (193)
T ss_dssp TCCCEEEEECCTTBC---THHH--HHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred ccCCEEEEEECCCCC---HHHH--HHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence 457889999887222 1222 24566788899888766544311 000 00 01112246899999999
Q ss_pred CchH--------HHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 176 DGIL--------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 176 DGTl--------~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
.|.- .+.+....+ ...||+-|-.|.. .+|..
T Consensus 96 ~~~~~l~~~~~l~~~l~~~~~-------~gk~i~aIC~G~~-lLa~a 134 (193)
T 1oi4_A 96 HSPDYLRGDNRFVTFTRDFVN-------SGKPVFAICHGPQ-LLISA 134 (193)
T ss_dssp THHHHHTTSHHHHHHHHHHHH-------TTCCEEEETTTHH-HHHHH
T ss_pred cCHHHhhhCHHHHHHHHHHHH-------cCCEEEEECHHHH-HHHHC
Confidence 7642 122222222 2678999988874 55554
No 125
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=68.77 E-value=22 Score=31.18 Aligned_cols=89 Identities=10% Similarity=0.093 Sum_probs=48.8
Q ss_pred CCcEEEEEEc-CCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVN-PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivN-P~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
+..++.+|+. +...+.--..++ +-++..+++.|+++.+..+... .+..+..+.+...++|+||++|.. ..+.+..
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~--~~~~~~~ 80 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAY-EGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA--FAEYFST 80 (296)
T ss_dssp --CEEEEECCCC----CCTHHHH-HHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECSTH--HHHHHHT
T ss_pred CCcEEEEEECCCCCCCcHHHHHH-HHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh--HHHHHHH
Confidence 4567888884 333212223344 5777888888987766555332 333455666666789999988643 2333333
Q ss_pred HhcCccccccCCccEEEec
Q 022147 186 LLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP 204 (302)
+... ..++|+.++-
T Consensus 81 ~~~~-----~p~~p~v~id 94 (296)
T 2hqb_A 81 IHNQ-----YPDVHFVSFN 94 (296)
T ss_dssp TTTS-----CTTSEEEEES
T ss_pred HHHH-----CCCCEEEEEe
Confidence 3221 1256777763
No 126
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=68.70 E-value=31 Score=29.86 Aligned_cols=79 Identities=9% Similarity=0.199 Sum_probs=49.4
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
++.+.+.|++...+..- ...++ +.++..+++.|+.+.+..+.... ...++.+.+...++|+||+++.+.+-.+.+..
T Consensus 13 ~~s~~Igvi~~~~~~~~-~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 90 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAV-FADMF-SGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAA 90 (303)
T ss_dssp ----CEEEEESCTTSTT-HHHHH-HHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHH
T ss_pred CCCCEEEEEeCCCcChH-HHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHH
Confidence 45566778775443322 23333 67888888999988887766433 33456677767789999999987763225555
Q ss_pred Hh
Q 022147 186 LL 187 (302)
Q Consensus 186 L~ 187 (302)
+.
T Consensus 91 l~ 92 (303)
T 3kke_A 91 VL 92 (303)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 127
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=68.51 E-value=6.9 Score=37.26 Aligned_cols=60 Identities=8% Similarity=0.003 Sum_probs=41.5
Q ss_pred cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 152 QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 152 ~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
++.-.++++.+...+.|.+|++|||||+.-+ +.|.+.- .+...++++.-||.==-||+.-
T Consensus 90 ~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A-~~L~~~~-~~~g~~i~vIGiPkTIDNDl~~ 149 (419)
T 3hno_A 90 RREYERLIEVFKAHDIGYFFYNGGGDSADTC-LKVSQLS-GTLGYPIQAIHVPKTVDNDLPI 149 (419)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEESHHHHHHH-HHHHHHH-HHTTCCCEEEEEECCTTCCCSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHH-HHHHHHH-HHhCCCccEEEecccccCCCcC
Confidence 3455567777777789999999999998654 3343210 0012368999999988899864
No 128
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=68.20 E-value=57 Score=28.79 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=51.6
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE--EEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~--v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+|+.+|.... ..+.... +.++..|++.|+++. ........+....++++...++|.|++++.|.....+++.
T Consensus 140 g~~~iaii~~~~---~~g~~~~-~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~ 215 (364)
T 3lop_A 140 GVTRIGVLYQED---ALGKEAI-TGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQ 215 (364)
T ss_dssp TCCCEEEEEETT---HHHHHHH-HHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHH
T ss_pred CCceEEEEEeCc---hhhHHHH-HHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHH
Confidence 457888887642 1223233 577888888888653 2222333445556666666789999998888778888888
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 216 ~~~~ 219 (364)
T 3lop_A 216 YRAR 219 (364)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8765
No 129
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=68.03 E-value=5.3 Score=40.97 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=41.0
Q ss_pred HHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 155 a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
..++++.+...+.|.+|++|||||+.- ++.|.+....-....+|+.-||.=--||+..
T Consensus 473 ~~~~~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~g 530 (766)
T 3o8o_B 473 LGMIAYYFQKYEFDGLIIVGGFEAFES-LHQLERARESYPAFRIPMVLIPATLSNNVPG 530 (766)
T ss_dssp HHHHHHHHHHHTCSEEEEEESHHHHHH-HHHHHTTTTTCGGGCSCCCEEEBCTTCCCSS
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH-HHHHHHHHHhcCccCCcEEeeccccccCCCC
Confidence 445667777778999999999999865 4455432111112368999999988999864
No 130
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=67.91 E-value=7.1 Score=40.15 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=41.6
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+..++++.+...+.|.+|++|||||+.-+ +.|.+.........+|+.-||.=--||+..
T Consensus 471 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~~~~~~~~~i~vIgiPkTIDNDl~g 529 (787)
T 3o8o_A 471 DLGTIAYYFQKNKLDGLIILGGFEGFRSL-KQLRDGRTQHPIFNIPMCLIPATVSNNVPG 529 (787)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESHHHHHHH-HHHHHHTTTCGGGGSCEEEEEBCTTCCCTT
T ss_pred hHHHHHHHHHHhCCCEEEEeCCchHHHHH-HHHHHHHHhcCccCCceeecccccccCCCC
Confidence 44566777777889999999999998764 344332111111368999999999999874
No 131
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=67.74 E-value=6.7 Score=40.24 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCCceEEEEcCCchHHHHH----------HHHhcC-----ccccccCCccEEEecCCChhhHHH
Q 022147 156 KEIVKVLDLSKYDGIVCVSGDGILVEVV----------NGLLER-----EDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 156 ~el~~~~~~~~~d~IVvvGGDGTl~evv----------ngL~~~-----~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.++++.+...+.|.+|++|||||+.-+. ..|.+. ........+++.-||.=--||+..
T Consensus 99 ~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~g 171 (762)
T 3o8l_A 99 LRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCG 171 (762)
T ss_dssp HHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSS
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCC
Confidence 4566667777899999999999987653 222221 111222468999999888888874
No 132
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=67.70 E-value=12 Score=34.59 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=46.1
Q ss_pred EEEEEEcCCCCCCc---hhhhHHHHHHHHHHhcCCcEEEEEeCCc----------chHHHHHHHhhcCCCceEEEE-cCC
Q 022147 111 RLYIFVNPFGGKKI---ASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIVCV-SGD 176 (302)
Q Consensus 111 r~~vivNP~sG~~~---a~~~~~~~v~~~L~~ag~~~~v~~T~~~----------~~a~el~~~~~~~~~d~IVvv-GGD 176 (302)
.-.-|+.|.|+-.. ....+ +.....|+..|+++.+..+-.. ..|.++.+.+.....++|+|+ ||+
T Consensus 6 D~I~ivaPSs~~~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 84 (346)
T 4eys_A 6 STIGIVSLSSGIIGEDFVKHEV-DLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIGGD 84 (346)
T ss_dssp CEEEEECSSCCGGGSGGGHHHH-HHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEECCCCS
T ss_pred cEEEEEeCCCcccccccCHHHH-HHHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 44667899887531 12234 4566789999987765433322 233455555555678888776 999
Q ss_pred chHHHHHHHH
Q 022147 177 GILVEVVNGL 186 (302)
Q Consensus 177 GTl~evvngL 186 (302)
|+. +++..|
T Consensus 85 g~~-rlLp~L 93 (346)
T 4eys_A 85 DTY-RLLPYL 93 (346)
T ss_dssp CGG-GGHHHH
T ss_pred CHH-HHHHHh
Confidence 984 555555
No 133
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=67.60 E-value=15 Score=31.73 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCchHH-----HHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 165 SKYDGIVCVSGDGILV-----EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 165 ~~~d~IVvvGGDGTl~-----evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
..||.|++.||.|... +-+..++++- .....+++-|=.|+. .+|..
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~---~~~gk~vaaIC~G~~-~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEI---YANGGVVAAVCHGPA-IFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHH---HHTTCEEEEETTGGG-GGTTC
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHH---HHcCCEEEEECCCHH-HHHhc
Confidence 3689999999988632 1122222210 012678999888886 56654
No 134
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=67.06 E-value=19 Score=30.38 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=53.5
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch---HHHHHHHhhcCC-CceEEEEcCCc-hHHHHHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH---AKEIVKVLDLSK-YDGIVCVSGDG-ILVEVVNG 185 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~---a~el~~~~~~~~-~d~IVvvGGDG-Tl~evvng 185 (302)
++.+++. .....-...++ +.++..+++.|+++.+..+....+ ..+..+.+...+ +|+||+.+-|. ...+.++.
T Consensus 2 ~Ig~i~~-~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~ 79 (276)
T 3ksm_A 2 KLLLVLK-GDSNAYWRQVY-LGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQ 79 (276)
T ss_dssp EEEEECS-CSSSTHHHHHH-HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHH
T ss_pred eEEEEeC-CCCChHHHHHH-HHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHH
Confidence 3455543 33322223333 678888888898887765432222 234556665567 99999999764 45667777
Q ss_pred HhcCccccccCCccEEEecCC
Q 022147 186 LLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~G 206 (302)
+... .+|+..+-..
T Consensus 80 ~~~~-------~ipvV~~~~~ 93 (276)
T 3ksm_A 80 YRAR-------NIPVLVVDSD 93 (276)
T ss_dssp HHHT-------TCCEEEESSC
T ss_pred HHHC-------CCcEEEEecC
Confidence 7665 6787777443
No 135
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=66.83 E-value=20 Score=28.75 Aligned_cols=58 Identities=7% Similarity=0.099 Sum_probs=39.2
Q ss_pred CCCcEEEEEEcCCC-------CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc
Q 022147 107 GRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL 164 (302)
Q Consensus 107 ~r~~r~~vivNP~s-------G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~ 164 (302)
.+|+.+.+|+|-.. ..+.+...=.+.++..|+..|++++++.--...+..+..+++..
T Consensus 13 ~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 77 (146)
T 2dko_A 13 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSK 77 (146)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHH
Confidence 45677888887531 11222222336889999999999998887777777777666643
No 136
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=66.71 E-value=12 Score=32.64 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=52.7
Q ss_pred CCCcEEEEEEcCC----CCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch-HHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 107 GRPKRLYIFVNPF----GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 107 ~r~~r~~vivNP~----sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~-a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
.+.+.+.|++... ....-...++ +.++..+++.|+.+.+..+....+ ..++.+.+...++|+||+++.+.+ .+
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 97 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVL-NGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD-DP 97 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHH-HHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT-CH
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC-cH
Confidence 3456677666431 1111122233 567777888888777665544322 234556666678999999987754 35
Q ss_pred HHHHHhcCccccccCCccEEEecC
Q 022147 182 VVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiIP~ 205 (302)
.+..+... .+|+..+-.
T Consensus 98 ~~~~l~~~-------~iPvV~i~~ 114 (305)
T 3huu_A 98 IEHLLNEF-------KVPYLIVGK 114 (305)
T ss_dssp HHHHHHHT-------TCCEEEESC
T ss_pred HHHHHHHc-------CCCEEEECC
Confidence 66666544 677766644
No 137
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=66.47 E-value=25 Score=29.40 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=39.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDG 177 (302)
.+.+.+++...+ ..--..++ +.++..+++.|+.+.+..+... ....++.+.+...++|+||+.+.+.
T Consensus 2 s~~Igvi~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 69 (255)
T 1byk_A 2 DKVVAIIVTRLD-SLSENLAV-QTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTG 69 (255)
T ss_dssp CCEEEEEESCTT-CHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCEEEEEeCCCC-CccHHHHH-HHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCcc
Confidence 456677774322 11122233 5667778888887776665432 2223455666667789998888653
No 138
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=66.46 E-value=50 Score=29.61 Aligned_cols=79 Identities=8% Similarity=-0.037 Sum_probs=46.8
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe--CCcchHHHHHHH--hhcCCCceEEEEcCCchHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKV--LDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T--~~~~~a~el~~~--~~~~~~d~IVvvGGDGTl~evv 183 (302)
..+|+.+|..+. ...+.... +.++..|++.|+++..... ....+....+.+ +...++|.|++.+-......++
T Consensus 140 g~~~iaii~~~~--~~~g~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~ 216 (391)
T 3eaf_A 140 GQGKLALAYDSK--VAYSRSPI-GAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLAADPDYVWCGNTISSCSLLG 216 (391)
T ss_dssp CSEEEEEEECTT--CHHHHTTH-HHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH
T ss_pred CCCEEEEEEecC--ChhHHHHH-HHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHH
Confidence 457899998752 22233333 5778889999887643332 223345556666 6667888776644334455566
Q ss_pred HHHhcC
Q 022147 184 NGLLER 189 (302)
Q Consensus 184 ngL~~~ 189 (302)
..+.+.
T Consensus 217 ~~~~~~ 222 (391)
T 3eaf_A 217 RAMAKV 222 (391)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 666543
No 139
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=66.44 E-value=37 Score=27.37 Aligned_cols=45 Identities=31% Similarity=0.406 Sum_probs=30.9
Q ss_pred CCCceEEEEcCCchHHHHHHHHhcC-ccccccCCccEEEecCCChhhHHHh
Q 022147 165 SKYDGIVCVSGDGILVEVVNGLLER-EDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 165 ~~~d~IVvvGGDGTl~evvngL~~~-~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
+.+|.+|+++|||=+..+++.|.++ . .++-+.-.|..|...|.+.
T Consensus 107 ~~~d~~vLvSgD~DF~plv~~lr~~~G-----~~V~v~g~~~~~s~~L~~~ 152 (165)
T 2qip_A 107 PDVDRVILVSGDGDFSLLVERIQQRYN-----KKVTVYGVPRLTSQTLIDC 152 (165)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHHHC-----CEEEEEECGGGSCHHHHHH
T ss_pred ccCCEEEEEECChhHHHHHHHHHHHcC-----cEEEEEeCCCcChHHHHHh
Confidence 5799999999999999999999773 3 2343333344455555443
No 140
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=66.31 E-value=29 Score=29.75 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE-eC-CcchHHHHHHHhhcCCCceEEEEcCCch-HHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNG 185 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~-T~-~~~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvng 185 (302)
++++.+++ |..+..-...+ .+.++..+++.|+++.+.. +. .+....+..+.+...++|+||+.+.|.. ..+.+..
T Consensus 4 ~~~Ig~i~-~~~~~~~~~~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~ 81 (303)
T 3d02_A 4 EKTVVNIS-KVDGMPWFNRM-GEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKK 81 (303)
T ss_dssp CEEEEEEC-SCSSCHHHHHH-HHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred ceEEEEEe-ccCCChHHHHH-HHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH
Confidence 34555555 44333222323 3566777888887665433 22 2222334556665678999999888754 3345555
Q ss_pred HhcCccccccCCccEEEec
Q 022147 186 LLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP 204 (302)
+... ++|+..+-
T Consensus 82 ~~~~-------~ipvV~~~ 93 (303)
T 3d02_A 82 ARDA-------GIVVLTNE 93 (303)
T ss_dssp HHHT-------TCEEEEES
T ss_pred HHHC-------CCeEEEEe
Confidence 5443 57776653
No 141
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=65.72 E-value=45 Score=27.18 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=39.4
Q ss_pred CCcEEEEEE--cCCCCCCchhhhHHHHHHHHHHhcCCcEEE--EEeCCcchHHHHHHHhhcC-CCceEEEEcCCc
Q 022147 108 RPKRLYIFV--NPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLS-KYDGIVCVSGDG 177 (302)
Q Consensus 108 r~~r~~viv--NP~sG~~~a~~~~~~~v~~~L~~ag~~~~v--~~T~~~~~a~el~~~~~~~-~~d~IVvvGGDG 177 (302)
++.|+.||. |. .|+ -...-...+...|++.|+++.. +..+..+...+..+++... ++|.||+.||=|
T Consensus 9 ~~~~v~Ii~tGdE-~g~--i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 9 IPTRIAILTVSNR-RGE--EDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp CCCEEEEEEECSS-CCG--GGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred CCCEEEEEEEeCC-CCc--ccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 345666665 44 332 2222234678889999987543 3334444444444444333 599999999966
No 142
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=65.62 E-value=12 Score=31.29 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=53.1
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-------h-----HHHHHHHhhcCCCceEEEEcCC
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-------H-----AKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-------~-----a~el~~~~~~~~~d~IVvvGGD 176 (302)
++|++|++-|.. ....+ ......|+.+|+++++...+... + +.....++....||.|++.||.
T Consensus 2 ~~kV~ill~~g~---~~~e~--~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~ 76 (205)
T 2ab0_A 2 SASALVCLAPGS---EETEA--VTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGI 76 (205)
T ss_dssp CCEEEEEECTTC---CHHHH--HHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCH
T ss_pred CcEEEEEEcCCC---cHHHH--HHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCc
Confidence 468898888732 22222 23456788899888776544320 0 0001233334679999999997
Q ss_pred chHHH---------HHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 177 GILVE---------VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 177 GTl~e---------vvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+.... .+..... ...+|+-|-.|.+--+|.
T Consensus 77 ~~~~~l~~~~~l~~~l~~~~~-------~gk~i~aiC~G~~~lLa~ 115 (205)
T 2ab0_A 77 KGAECFRDSTLLVETVKQFHR-------SGRIVAAICAAPATVLVP 115 (205)
T ss_dssp HHHHHHHHCHHHHHHHHHHHH-------TTCEEEEETHHHHHHTTT
T ss_pred ccHHHhccCHHHHHHHHHHHH-------cCCEEEEECHhHHHHHHH
Confidence 53221 2222222 256888888887545554
No 143
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=65.48 E-value=17 Score=30.87 Aligned_cols=69 Identities=10% Similarity=0.199 Sum_probs=43.6
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCch
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
++.+++.+++...+. .-...++ +.++..+++.|+.+.+..+...+...++.+.+...++|+|| ++.+..
T Consensus 3 ~~~~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSN-PWFIDLI-QSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp -CCCEEEEEESCTTS-GGGHHHH-HHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred CccCEEEEEeCCCCC-hHHHHHH-HHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 355677777744322 2223333 57788888889888877766333344566666667899999 887765
No 144
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=65.43 E-value=6.8 Score=40.32 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=39.3
Q ss_pred HHHHHhhcCCCceEEEEcCCchHHHHH----------HHHhcC-----ccccccCCccEEEecCCChhhHHH
Q 022147 157 EIVKVLDLSKYDGIVCVSGDGILVEVV----------NGLLER-----EDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 157 el~~~~~~~~~d~IVvvGGDGTl~evv----------ngL~~~-----~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+.++.+...+.|.+|++|||||+.-+- +.|.+. ........+|+.-||.=--||+..
T Consensus 90 ~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 90 QAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp HHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 455666667889999999999987652 233321 111223478999999888898875
No 145
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=65.43 E-value=20 Score=30.42 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcC
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~ 189 (302)
+++.+|=. .+|...... +.+.+...|+..|+++++..... .+..+..+.+. +.|.|++-||+=+ ..+..|.++
T Consensus 28 ~~i~~Ip~-As~~~~~~~-~~~s~~~a~~~lG~~v~~~~i~~-~~~~~~~~~l~--~ad~I~l~GG~~~--~l~~~L~~~ 100 (206)
T 3l4e_A 28 KTVTFIPT-ASTVEEVTF-YVEAGKKALESLGLLVEELDIAT-ESLGEITTKLR--KNDFIYVTGGNTF--FLLQELKRT 100 (206)
T ss_dssp CEEEEECG-GGGGCSCCH-HHHHHHHHHHHTTCEEEECCTTT-SCHHHHHHHHH--HSSEEEECCSCHH--HHHHHHHHH
T ss_pred CEEEEECC-CCCCCCHHH-HHHHHHHHHHHcCCeEEEEEecC-CChHHHHHHHH--hCCEEEECCCCHH--HHHHHHHHC
Confidence 56665532 233222222 34678899999998765432222 22333334443 4688887665433 344444332
Q ss_pred cccc-----ccCCccEEEecCCC
Q 022147 190 EDWN-----DAIKVPLGVVPAGT 207 (302)
Q Consensus 190 ~~~~-----~~~~~plgiIP~GT 207 (302)
.-.+ -....|+.-+-+|.
T Consensus 101 gl~~~l~~~~~~G~p~~G~sAGa 123 (206)
T 3l4e_A 101 GADKLILEEIAAGKLYIGESAGA 123 (206)
T ss_dssp THHHHHHHHHHTTCEEEEETHHH
T ss_pred ChHHHHHHHHHcCCeEEEECHHH
Confidence 1000 01257887788776
No 146
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=64.93 E-value=11 Score=32.49 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=52.3
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCch-----------
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI----------- 178 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGT----------- 178 (302)
+|+++|.++..-.- ..+.+.|+..|++++++.....+. +-. +..++|+||+.||-++
T Consensus 1 m~i~vi~h~~~e~~-------g~~~~~l~~~g~~~~~~~~~~~~~---~p~--~~~~~d~lii~GGp~~~~~~~~~~~~~ 68 (236)
T 3l7n_A 1 MRIHFILHETFEAP-------GAYLAWAALRGHDVSMTKVYRYEK---LPK--DIDDFDMLILMGGPQSPSSTKKEFPYY 68 (236)
T ss_dssp CEEEEEECCTTSCC-------HHHHHHHHHTTCEEEEEEGGGTCC---CCS--CGGGCSEEEECCCSSCTTCCTTTCTTC
T ss_pred CeEEEEeCCCCCCc-------hHHHHHHHHCCCeEEEEeeeCCCC---CCC--CccccCEEEECCCCCCcccccccCccc
Confidence 47888887754321 244577888999988776543211 111 1347999999999887
Q ss_pred ----HHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhh
Q 022147 179 ----LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 179 ----l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~ 216 (302)
..+++..++.. +.|+--|=.| .=.++..++
T Consensus 69 ~~~~~~~~i~~~~~~-------~~PvLGIClG-~QlL~~~~G 102 (236)
T 3l7n_A 69 DAQAEVKLIQKAAKS-------EKIIVGVCLG-AQLMGVAYG 102 (236)
T ss_dssp CHHHHHHHHHHHHHT-------TCEEEEETHH-HHHHHHHTT
T ss_pred chHHHHHHHHHHHHc-------CCCEEEEchH-HHHHHHHhC
Confidence 33444444443 5666555555 334555553
No 147
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=64.43 E-value=73 Score=27.84 Aligned_cols=77 Identities=6% Similarity=-0.061 Sum_probs=47.2
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE--EeCCcchHHHHHHHhhcCCCceEEEEcCCc-hHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVN 184 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~--~T~~~~~a~el~~~~~~~~~d~IVvvGGDG-Tl~evvn 184 (302)
..+|+.+|. +.. ..+.... +.++..|++.|+++... ......+....++++...++|.|+++ +|+ ....++.
T Consensus 138 g~~~ia~i~-~~~--~~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~-~~~~~a~~~~~ 212 (358)
T 3hut_A 138 GFTSVAVIG-VTT--DWGLSSA-QAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLA-MAYEDAAPFLR 212 (358)
T ss_dssp TCCEEEEEE-ESS--HHHHHHH-HHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEE-SCHHHHHHHHH
T ss_pred CCCEEEEEe-cCc--HHHHHHH-HHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEc-cCchHHHHHHH
Confidence 457888886 222 2233333 57788899999876432 22223344455566655678877766 455 7778888
Q ss_pred HHhcC
Q 022147 185 GLLER 189 (302)
Q Consensus 185 gL~~~ 189 (302)
.+.+.
T Consensus 213 ~~~~~ 217 (358)
T 3hut_A 213 ALRAR 217 (358)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88765
No 148
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=63.91 E-value=12 Score=30.75 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHH-----H-----HHHHhhcCCCceEEEEcCC
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK-----E-----IVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~-----e-----l~~~~~~~~~d~IVvvGGD 176 (302)
+.+||++|++-| |- ..... ......|+.+|+++++.-.+..+... . ...++....||.|++.||.
T Consensus 3 ~m~kkv~ill~~--g~-~~~e~--~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~ 77 (190)
T 4e08_A 3 HMSKSALVILAP--GA-EEMEF--IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGL 77 (190)
T ss_dssp -CCCEEEEEECT--TC-CHHHH--HHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCH
T ss_pred CCCcEEEEEECC--Cc-hHHHH--HHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCC
Confidence 456789988876 22 22222 24557788899888777654311100 0 0122223469999999995
Q ss_pred -chH--------HHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 177 -GIL--------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 177 -GTl--------~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
|.- .+.++.... ...+|+-|-.|+. .+|.+
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~~-------~~k~i~aiC~G~~-~La~a 116 (190)
T 4e08_A 78 GGSNAMGESSLVGDLLRSQES-------GGGLIAAICAAPT-VLAKH 116 (190)
T ss_dssp HHHHHHHHCHHHHHHHHHHHH-------TTCEEEEETTTHH-HHHHT
T ss_pred hHHHHhhhCHHHHHHHHHHHH-------CCCEEEEECHHHH-HHHHC
Confidence 331 122222222 2678998888873 45543
No 149
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=63.69 E-value=10 Score=34.58 Aligned_cols=66 Identities=11% Similarity=0.261 Sum_probs=42.0
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC----------CcchHHHHHHHhhcCCCceEEE-EcCCchH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----------QQLHAKEIVKVLDLSKYDGIVC-VSGDGIL 179 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~----------~~~~a~el~~~~~~~~~d~IVv-vGGDGTl 179 (302)
.-.-|+.|.++-. ...+ +.....|+..|+++.+..+- ....|.++.+.+.....++|+| .||+|+.
T Consensus 18 d~I~ivaPSs~~~--~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyga~ 94 (311)
T 1zl0_A 18 GRVALIAPASAIA--TDVL-EATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYGCG 94 (311)
T ss_dssp SEEEEECCSBCCC--HHHH-HHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSCGG
T ss_pred CEEEEEeCCCCCC--HHHH-HHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCcCHH
Confidence 3467889988764 3334 57778899999887653222 2223445555555556676665 5999974
No 150
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=63.41 E-value=30 Score=29.32 Aligned_cols=85 Identities=9% Similarity=0.065 Sum_probs=48.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-hHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHh
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~ 187 (302)
+.+.+++ |.....--..+. +.++..+++.|+.+.+..+.... .-.+..+.+...+.|+||+.+.|.. +.+.+..+.
T Consensus 2 ~~Igvi~-~~~~~~f~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 79 (271)
T 2dri_A 2 DTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMAN 79 (271)
T ss_dssp CEEEEEE-SCSSSHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHH
T ss_pred cEEEEEe-cCCCCHHHHHHH-HHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHH
Confidence 3455665 332222222233 56777888889877666554322 2233455665668999999887643 234555554
Q ss_pred cCccccccCCccEEEe
Q 022147 188 EREDWNDAIKVPLGVV 203 (302)
Q Consensus 188 ~~~~~~~~~~~plgiI 203 (302)
.. .+|+..+
T Consensus 80 ~~-------~iPvV~i 88 (271)
T 2dri_A 80 QA-------NIPVITL 88 (271)
T ss_dssp HT-------TCCEEEE
T ss_pred HC-------CCcEEEe
Confidence 43 5677666
No 151
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=63.38 E-value=52 Score=28.82 Aligned_cols=78 Identities=8% Similarity=0.039 Sum_probs=50.2
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+|+.+|... ...+.... +.++..|+++|+++.... .....+....++++...++|.|++++.|.....+++.
T Consensus 137 g~~~iaii~~~---~~~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~ 212 (356)
T 3ipc_A 137 KDAKVAIIHDK---TPYGQGLA-DETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQ 212 (356)
T ss_dssp TTCCEEEEECS---SHHHHHHH-HHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEEeCC---ChHHHHHH-HHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHH
Confidence 35788888753 12233333 577788888888653222 2223344555666666789999999988888888888
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 213 ~~~~ 216 (356)
T 3ipc_A 213 AADQ 216 (356)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 8654
No 152
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=63.31 E-value=64 Score=28.40 Aligned_cols=78 Identities=13% Similarity=0.039 Sum_probs=47.4
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE--EEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~--v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+|+.+|... ...+.... +.++..|++.|+++. ........+.....+++...++|.|++++-+.....+++.
T Consensus 158 g~~~ia~i~~~---~~~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~ 233 (386)
T 3sg0_A 158 GAKKVGYIGFS---DAYGEGYY-KVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKA 233 (386)
T ss_dssp TCCEEEEEEES---SHHHHHHH-HHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHH
T ss_pred CCCEEEEEecC---chHHHHHH-HHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 45788888532 22233333 567788888888653 2222223344455556655688988887765666778888
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 234 ~~~~ 237 (386)
T 3sg0_A 234 LRER 237 (386)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7665
No 153
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=63.14 E-value=57 Score=28.29 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=48.5
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+++.+|..+.. .+.... +.++..|++.|+++.... .....+....++++...++|.|++.+-|.....++..
T Consensus 137 g~~~i~~i~~~~~---~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~ 212 (346)
T 1usg_A 137 KPQRIAIIHDKQQ---YGEGLA-RSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQ 212 (346)
T ss_dssp CCSSEEEEECSSH---HHHHHH-HHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHH
T ss_pred CCCeEEEEECCCc---hHHHHH-HHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHH
Confidence 3578888876421 222222 567788888898764322 2222344455666655678998888766666778888
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 213 ~~~~ 216 (346)
T 1usg_A 213 ARSV 216 (346)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7664
No 154
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=63.02 E-value=7.9 Score=39.74 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=39.2
Q ss_pred HHHHHhhcCCCceEEEEcCCchHHHHH----------HHHhcC-----ccccccCCccEEEecCCChhhHHHh
Q 022147 157 EIVKVLDLSKYDGIVCVSGDGILVEVV----------NGLLER-----EDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 157 el~~~~~~~~~d~IVvvGGDGTl~evv----------ngL~~~-----~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
++++.+...+.|.+|++|||||+.-+- +.|.+. +.......+++.-||.=--||++.+
T Consensus 89 ~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~gT 161 (766)
T 3o8o_B 89 LGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTT 161 (766)
T ss_dssp HHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTTC
T ss_pred HHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCCC
Confidence 345666667899999999999987552 233321 0011123689999999888998753
No 155
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=62.67 E-value=8 Score=28.53 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=24.0
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhhhcc
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l~~~ 106 (302)
.+.+.|...++++.+.|+++|+..+.+.
T Consensus 76 ~r~~~l~A~s~~e~~~Wi~al~~~~~~~ 103 (107)
T 2cof_A 76 EELAKLEAKSSEEMGHWLGLLLSESGSG 103 (107)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHSSCS
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999887654
No 156
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=62.42 E-value=75 Score=27.28 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc-CCchHHHHH-----HHHhcCccccccCCccEEEec
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVEVV-----NGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG-GDGTl~evv-----ngL~~~~~~~~~~~~plgiIP 204 (302)
+.+...|+..+++++...... .-+..+.+.+...+.|.||+.. |-+.+.+.+ ..++.+ .++|+.++|
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~------~~~pvLvv~ 289 (294)
T 3loq_A 217 RVMEEVIGAEGIEVHVHIESG-TPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRR------SPVPVFVCK 289 (294)
T ss_dssp HHHHHHHHHTTCCEEEEEECS-CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHH------CSSCEEEEC
T ss_pred HHHHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhc------CCCCEEEEC
Confidence 577888888898876655443 4455666666656788655543 455555543 444443 378999998
Q ss_pred CCC
Q 022147 205 AGT 207 (302)
Q Consensus 205 ~GT 207 (302)
-+.
T Consensus 290 ~~~ 292 (294)
T 3loq_A 290 RGD 292 (294)
T ss_dssp SCT
T ss_pred CCC
Confidence 763
No 157
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=62.32 E-value=10 Score=37.47 Aligned_cols=103 Identities=13% Similarity=0.092 Sum_probs=58.8
Q ss_pred CcEEEEEEcCCCCCC--chhhhHHHHHHHHHHhcCCc-EEEEEe--CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHH
Q 022147 109 PKRLYIFVNPFGGKK--IASKIFLDDVKPLLEDANIQ-FTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 109 ~~r~~vivNP~sG~~--~a~~~~~~~v~~~L~~ag~~-~~v~~T--~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evv 183 (302)
..+++-|.|-..|=- +-..+-.+.+..++..-|.. .--..+ ...+.-.++++.+...+.|.+|++|||||+.-+.
T Consensus 104 ~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~ 183 (555)
T 2f48_A 104 NSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAA 183 (555)
T ss_dssp TCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHH
T ss_pred CCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcHHHHHH
Confidence 356777777554421 11111124566666655521 100000 1233445667777777899999999999976543
Q ss_pred HHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 184 ngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.|.+.- ......+|+.-||.==-||++.
T Consensus 184 -~L~e~~-~~~~~~i~vIGiPkTIDNDl~~ 211 (555)
T 2f48_A 184 -ILAEYF-KKNGENIQVIGVPKTIDADLRN 211 (555)
T ss_dssp -HHHHHH-HHTTCCCEEEEEEEETTCCCCC
T ss_pred -HHHHHH-HHhCCCCcEEEeccccCCCCCC
Confidence 232210 0112478999999988899864
No 158
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=62.15 E-value=27 Score=30.88 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=67.5
Q ss_pred hhccCCCcEEEEEEcCCC--------------CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc---C
Q 022147 103 IDSFGRPKRLYIFVNPFG--------------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---S 165 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~s--------------G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~---~ 165 (302)
++-..+|+.+.+|||-.. ....+...=.+.++..|+..|+++++..--...+..+..+++.. .
T Consensus 10 Y~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~ 89 (271)
T 3h11_B 10 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHS 89 (271)
T ss_dssp CCCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCT
T ss_pred CCCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 333456778888887521 11122212236889999999999988877777777766666543 3
Q ss_pred CCceEE-----------EEcCCch---HHHHHHHHhcCccccccCCccEEEecCCChhhHHHhh
Q 022147 166 KYDGIV-----------CVSGDGI---LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 166 ~~d~IV-----------vvGGDGT---l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
.+|.+| +.|=||. +.++.+.+....-..-..++-|-+|-+=-||.+...+
T Consensus 90 ~~d~~v~~ilSHG~~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~gv 153 (271)
T 3h11_B 90 NMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGI 153 (271)
T ss_dssp TCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBCC---
T ss_pred CCCEEEEEEEcCCcCCEEEecCCCeecHHHHHHHhhhccChhhcCCccEEEEeccCCCcccCCc
Confidence 466543 2566774 5666665543321112235678888887777775543
No 159
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=62.04 E-value=41 Score=28.66 Aligned_cols=84 Identities=10% Similarity=0.114 Sum_probs=49.2
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhc
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLE 188 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~ 188 (302)
++.+++. .....-...+. +.++..+++.|+.+.+..+... ....+..+.+...++|+||+.+.|.. +.+.+..+.+
T Consensus 3 ~Igvi~~-~~~~~f~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (283)
T 2ioy_A 3 TIGLVIS-TLNNPFFVTLK-NGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANS 80 (283)
T ss_dssp EEEEEES-CSSSHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEec-CCCCHHHHHHH-HHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHHH
Confidence 4566663 32222222233 5667778888988776655432 22234555665678999999887654 3455666544
Q ss_pred CccccccCCccEEEe
Q 022147 189 REDWNDAIKVPLGVV 203 (302)
Q Consensus 189 ~~~~~~~~~~plgiI 203 (302)
. .+|+..+
T Consensus 81 ~-------~iPvV~~ 88 (283)
T 2ioy_A 81 K-------NIPVITI 88 (283)
T ss_dssp T-------TCCEEEE
T ss_pred C-------CCeEEEe
Confidence 3 5777665
No 160
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=61.70 E-value=6.7 Score=41.21 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCCceEEEEcCCchHHHHHHHHh-----------cC-----ccccccCCccEEEecCCChhhHHH
Q 022147 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL-----------ER-----EDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 156 ~el~~~~~~~~~d~IVvvGGDGTl~evvngL~-----------~~-----~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.++++.+...+.|.+|++|||||+.-+. .|. ++ ........+|+.-||.=--||+..
T Consensus 294 ~~~~~~L~~~gId~LvvIGGDGS~~gA~-~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 294 LQACYNMVSNGIDALVVCGGDGSLTGAD-LFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHH-HHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHHH-HHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 3456677778899999999999987543 221 11 001112468999999988899884
No 161
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=61.67 E-value=50 Score=26.74 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=39.5
Q ss_pred CCcEEEEEE--cCCCCCCchhhhHHHHHHHHHHhcCCcEEE--EEeCCcchHHHHHHHhhc-CCCceEEEEcCCc
Q 022147 108 RPKRLYIFV--NPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDL-SKYDGIVCVSGDG 177 (302)
Q Consensus 108 r~~r~~viv--NP~sG~~~a~~~~~~~v~~~L~~ag~~~~v--~~T~~~~~a~el~~~~~~-~~~d~IVvvGGDG 177 (302)
++.|+.||. |.. |+-. ..-...+...|++.|+++.. +..+..+...+..+++.. .++|.||+.||=|
T Consensus 12 ~~~rv~Ii~tGdEl-g~i~--Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 12 KEVRCKIVTISDTR-TEET--DKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp CCCEEEEEEECSSC-CTTT--CHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred cCCEEEEEEEcCcc-Ceec--cChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 455676665 554 3221 11224678889999987543 333444444444444432 2799999999966
No 162
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=61.45 E-value=22 Score=29.24 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=52.8
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-----h-----HHHHHHHh-hcCCCceEEEEcCCc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-----H-----AKEIVKVL-DLSKYDGIVCVSGDG 177 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-----~-----a~el~~~~-~~~~~d~IVvvGGDG 177 (302)
++|+.|++-| |- ....+ ......|+.+++++++...+... + +.....++ +...||.|++.||.+
T Consensus 3 ~~~v~ill~~--g~-~~~e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~ 77 (197)
T 2rk3_A 3 SKRALVILAK--GA-EEMET--VIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL 77 (197)
T ss_dssp CCEEEEEECT--TC-CHHHH--HHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHH
T ss_pred CCEEEEEECC--CC-cHHHH--HHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCch
Confidence 4688888876 22 22222 24556788899888776543210 0 00011233 336799999999975
Q ss_pred hHHH------HHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 178 ILVE------VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 178 Tl~e------vvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
.... +++-|.+.. ....+|+-|=.|+. .+|+.
T Consensus 78 ~~~~l~~~~~~~~~l~~~~----~~gk~i~aiC~G~~-~La~a 115 (197)
T 2rk3_A 78 GAQNLSESAAVKEILKEQE----NRKGLIATICAGPT-ALLAH 115 (197)
T ss_dssp HHHHHHHCHHHHHHHHHHH----HTTCEEEEETTTHH-HHHHT
T ss_pred hHHHhhhCHHHHHHHHHHH----HcCCEEEEECHHHH-HHHHC
Confidence 3321 222221110 12678998888874 55554
No 163
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=61.39 E-value=53 Score=28.88 Aligned_cols=78 Identities=9% Similarity=0.018 Sum_probs=50.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+|+.+|... . ..+.... +.++..|++.|+++.... .....+....++++...++|.|++.+.|.....+++.
T Consensus 138 g~~~ia~i~~~-~--~~g~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~ 213 (368)
T 4eyg_A 138 GIKKVATLTSD-Y--APGNDAL-AFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQ 213 (368)
T ss_dssp TCCEEEEEEES-S--HHHHHHH-HHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEecC-c--hHhHHHH-HHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHH
Confidence 45788888732 1 2222222 567788888898754322 2222344455666655679999998888888889998
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 214 ~~~~ 217 (368)
T 4eyg_A 214 FAER 217 (368)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8765
No 164
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=61.25 E-value=15 Score=31.41 Aligned_cols=89 Identities=10% Similarity=0.101 Sum_probs=51.5
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
++.+.+.|++.......-...++ +.++..+++.|+.+.+..+.. .+...++.+.+...++|+||+.+-|..-.++..
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~- 86 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFL-RGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISNYDLEYLN- 86 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHH-HHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCHHHHHHHH-
T ss_pred CCCceEEEEeccccchHHHHHHH-HHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCcccHHHHH-
Confidence 45678888886322222223333 577788888898877665532 222234445555568999999988765433332
Q ss_pred HhcCccccccCCccEEEec
Q 022147 186 LLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP 204 (302)
+.. .++|+..+-
T Consensus 87 ~~~-------~~iPvV~~~ 98 (289)
T 3g85_A 87 KAS-------LTLPIILFN 98 (289)
T ss_dssp HCC-------CSSCEEEES
T ss_pred hcc-------CCCCEEEEC
Confidence 222 256766654
No 165
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=60.62 E-value=24 Score=29.26 Aligned_cols=62 Identities=8% Similarity=0.009 Sum_probs=40.4
Q ss_pred hhccCCCcEEEEEEcCCC-------CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc
Q 022147 103 IDSFGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL 164 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~s-------G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~ 164 (302)
+.-...++.+.+|+|-.. ..+.+...=.+.+..+|+..|++++++.--...+..+..+++..
T Consensus 37 Y~m~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~~~s~ 105 (173)
T 2ql9_A 37 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASE 105 (173)
T ss_dssp CCCCSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHT
T ss_pred cccCCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 333345677888887541 11223222346889999999999988877777777777766643
No 166
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=60.58 E-value=14 Score=31.35 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhcCCCceEEEEcCCch
Q 022147 132 DVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
.++..+++.|+++.+..+.. .....++.+.+...++|+||+.+.+.+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 67 (276)
T 2h0a_A 20 GIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLT 67 (276)
T ss_dssp HHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC
T ss_pred HHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCC
Confidence 44444555554443332221 111122333333345555555555443
No 167
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=60.56 E-value=39 Score=29.83 Aligned_cols=113 Identities=15% Similarity=0.040 Sum_probs=62.0
Q ss_pred hhccCCCcEEEEEEcCCCC-------CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc---CCCceEEE
Q 022147 103 IDSFGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIVC 172 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~sG-------~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~---~~~d~IVv 172 (302)
++-..+|+++.+|||-..= ...+...=.+.++..|+..|++++++.--...+..+..+++.. ..+|.+||
T Consensus 14 Y~m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~h~~~D~~vv 93 (277)
T 1nw9_B 14 YILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELARQDHGALDCCVV 93 (277)
T ss_dssp CCCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHHSCCTTCSEEEE
T ss_pred eeCCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhcccCCeEEE
Confidence 3334567888888876531 1122222236888999999999888877777777766666543 23564332
Q ss_pred E------------------cCCc---hHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhh
Q 022147 173 V------------------SGDG---ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 173 v------------------GGDG---Tl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
+ |=|| .+.++++-+.......-..++-|-+|-+=-||.+....
T Consensus 94 ~ilSHG~~~~~~~~~g~iy~~D~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG~~~d~g~ 157 (277)
T 1nw9_B 94 VILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGF 157 (277)
T ss_dssp EEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC--------
T ss_pred EEeCCCCccccccCCCcEEecCCceeeHHHHHHHhcccCChhHcCCCcEEEEeccCCCcccCCc
Confidence 1 2244 25666665533211111236678899988888876543
No 168
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=60.19 E-value=30 Score=27.63 Aligned_cols=86 Identities=9% Similarity=0.121 Sum_probs=48.9
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC--CchHH--HHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG--DGILV--EVVNG 185 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG--DGTl~--evvng 185 (302)
++++|++=.. .|..+++. +.+...|...|++++++.... .+..++..++. .+|.||+..- .|.+. +++..
T Consensus 1 Mkv~IvY~S~--tGnT~~~A-~~ia~~l~~~g~~v~~~~~~~-~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~fl~~ 74 (161)
T 3hly_A 1 MSVLIGYLSD--YGYSDRLS-QAIGRGLVKTGVAVEMVDLRA-VDPQELIEAVS--SARGIVLGTPPSQPSEAVATALST 74 (161)
T ss_dssp -CEEEEECTT--STTHHHHH-HHHHHHHHHTTCCEEEEETTT-CCHHHHHHHHH--HCSEEEEECCBSSCCHHHHHHHHH
T ss_pred CEEEEEEECC--ChHHHHHH-HHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHH--hCCEEEEEcCCcCCchhHHHHHHH
Confidence 3577777544 44555554 678888888899887776543 23445555543 5788777642 13344 45554
Q ss_pred HhcCccccccCCccEEEecC
Q 022147 186 LLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (302)
|.... ....+++++-.
T Consensus 75 l~~~~----l~gk~v~~fgs 90 (161)
T 3hly_A 75 IFAAA----HNKQAIGLFDS 90 (161)
T ss_dssp HHHHC----CTTSEEEEECC
T ss_pred HHhhh----hCCCEEEEEEc
Confidence 43311 12556776643
No 169
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=60.04 E-value=28 Score=30.93 Aligned_cols=113 Identities=10% Similarity=0.001 Sum_probs=66.0
Q ss_pred hhccCCCcEEEEEEcCCC-------CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc---CCCceEE-
Q 022147 103 IDSFGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV- 171 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~s-------G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~---~~~d~IV- 171 (302)
++-..+|+++.+|||-.. ....+...=.+.++..|+..|++++++.--...+..+..+++.. ..+|.+|
T Consensus 14 Y~m~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~vv 93 (278)
T 3od5_A 14 YKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVC 93 (278)
T ss_dssp CCCCSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTBSCEEE
T ss_pred cCCCCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEE
Confidence 333456778888876532 11222222236889999999999988877777777766666543 3455433
Q ss_pred E----------EcCCch--HHHHHHHHhcCccccccCCccEEEecCCChhhHHHhh
Q 022147 172 C----------VSGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 172 v----------vGGDGT--l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
+ .|=||. +.++++-+....-..-..++-|-+|-+=-||.+...+
T Consensus 94 ~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g~ 149 (278)
T 3od5_A 94 VFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPV 149 (278)
T ss_dssp EEESCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCEE
T ss_pred EEECCCCCCEEEEeCCeEEHHHHHHHhccccChhhcCCCcEEEEecCCCCcccCCe
Confidence 2 455554 4444444433211111235668888887777776544
No 170
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=59.62 E-value=44 Score=28.72 Aligned_cols=83 Identities=7% Similarity=0.125 Sum_probs=57.6
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~ 188 (302)
.+++.++-.+.--. -+ +.+..+| +++++.+.-.+.+++.+..+++...+++.|| ||++..+.+..+
T Consensus 106 ~~kIavVg~~~~~~-----~~-~~i~~ll---~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVV---G~~~~~~~A~~~-- 171 (225)
T 2pju_A 106 TSSIGVVTYQETIP-----AL-VAFQKTF---NLRLDQRSYITEEDARGQINELKANGTEAVV---GAGLITDLAEEA-- 171 (225)
T ss_dssp TSCEEEEEESSCCH-----HH-HHHHHHH---TCCEEEEEESSHHHHHHHHHHHHHTTCCEEE---ESHHHHHHHHHT--
T ss_pred CCcEEEEeCchhhh-----HH-HHHHHHh---CCceEEEEeCCHHHHHHHHHHHHHCCCCEEE---CCHHHHHHHHHc--
Confidence 45788886653211 12 3455555 5788888889999999999999888999876 588877777654
Q ss_pred CccccccCCccEEEecCCChhhHHHhh
Q 022147 189 REDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 189 ~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
.+|-..|- |...+-.++
T Consensus 172 --------Gl~~vlI~--s~eSI~~Ai 188 (225)
T 2pju_A 172 --------GMTGIFIY--SAATVRQAF 188 (225)
T ss_dssp --------TSEEEESS--CHHHHHHHH
T ss_pred --------CCcEEEEC--CHHHHHHHH
Confidence 55655555 356666665
No 171
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=58.87 E-value=26 Score=31.16 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=65.0
Q ss_pred ccCCCcEEEEEEcCCCC-------CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcC---CCceEE---
Q 022147 105 SFGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS---KYDGIV--- 171 (302)
Q Consensus 105 ~~~r~~r~~vivNP~sG-------~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~---~~d~IV--- 171 (302)
-..+++++.+|||-..= ...+...=.+.++..|+..|++++++.--...+..+..+++... .+|.+|
T Consensus 39 m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~d~~vv~i 118 (277)
T 4ehd_A 39 MDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVL 118 (277)
T ss_dssp CCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEE
T ss_pred CCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEEEE
Confidence 34567889988873221 11122122367899999999999888777777777777766532 345432
Q ss_pred --------EEcCCch--HHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 172 --------CVSGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 172 --------vvGGDGT--l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
+.|=||. +.++++.+....-..-..++-|-+|-+=-||.+...
T Consensus 119 lSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g 171 (277)
T 4ehd_A 119 LSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCG 171 (277)
T ss_dssp ESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCC
T ss_pred EcCCCCCEEEEeCCcEeHHHHHHHhhhccCchhcCCccEEEEecCCCCcccCC
Confidence 2344554 445554443321111123567888888788876553
No 172
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=58.72 E-value=39 Score=27.68 Aligned_cols=65 Identities=23% Similarity=0.225 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 131 DDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
++....|+..|++|++.... .+++..+++++... -=.|+++|+.+-|--++-++.. .|+.-+|.|
T Consensus 16 ~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~--~ViIa~AG~aa~Lpgvva~~t~---------~PVIgVP~~ 83 (157)
T 2ywx_A 16 EKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA--DVFIAIAGLAAHLPGVVASLTT---------KPVIAVPVD 83 (157)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCC--SEEEEEEESSCCHHHHHHTTCS---------SCEEEEEEC
T ss_pred HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCC--CEEEEEcCchhhhHHHHHhccC---------CCEEEecCC
Confidence 57788899999999987763 33444555555432 2267788999999999988853 466667773
No 173
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=58.68 E-value=32 Score=29.22 Aligned_cols=73 Identities=10% Similarity=0.153 Sum_probs=40.4
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
++.+++.|++... ...--..++ +.++..+++.|+.+.+..+....+. +... ++|+||+.+.|-+ .+.+..+
T Consensus 6 ~~~~~Igvi~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~-----~~~~-~vdgiI~~~~~~~-~~~~~~l 76 (277)
T 3cs3_A 6 RQTNIIGVYLADY-GGSFYGELL-EGIKKGLALFDYEMIVCSGKKSHLF-----IPEK-MVDGAIILDWTFP-TKEIEKF 76 (277)
T ss_dssp CCCCEEEEEECSS-CTTTHHHHH-HHHHHHHHTTTCEEEEEESTTTTTC-----CCTT-TCSEEEEECTTSC-HHHHHHH
T ss_pred cCCcEEEEEecCC-CChhHHHHH-HHHHHHHHHCCCeEEEEeCCCCHHH-----Hhhc-cccEEEEecCCCC-HHHHHHH
Confidence 4556777776432 222222233 5677778888887776655432111 0111 6889998887654 3455555
Q ss_pred hc
Q 022147 187 LE 188 (302)
Q Consensus 187 ~~ 188 (302)
..
T Consensus 77 ~~ 78 (277)
T 3cs3_A 77 AE 78 (277)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 174
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=58.24 E-value=26 Score=27.78 Aligned_cols=87 Identities=14% Similarity=0.174 Sum_probs=47.5
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~evvngL 186 (302)
++++|++=.. .|..+++. +.+...+... +.++++.-.... ..+...+|.||++. ++|.+...+..+
T Consensus 1 ~kilIvY~S~--tGnT~~vA-~~ia~~l~~~-~~v~~~~~~~~~-------~~~l~~~d~ii~g~pty~~g~~p~~~~~f 69 (169)
T 1czn_A 1 AKIGLFYGTQ--TGVTQTIA-ESIQQEFGGE-SIVDLNDIANAD-------ASDLNAYDYLIIGCPTWNVGELQSDWEGI 69 (169)
T ss_dssp CCEEEEECCS--SSHHHHHH-HHHHHHHTST-TTEEEEEGGGCC-------GGGGGGCSEEEEECCEETTTEECHHHHHH
T ss_pred CeEEEEEECC--CcHHHHHH-HHHHHHhCcc-cceEEEEhhhCC-------HhHHhhCCEEEEEecccCCCcCCHHHHHH
Confidence 4677777543 45666554 5777777654 556665543221 11234689888765 667666655444
Q ss_pred hcCccccccCCccEEEecCCC
Q 022147 187 LEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GT 207 (302)
+..-........+++++-+|.
T Consensus 70 ~~~l~~~~l~gk~~~~f~t~~ 90 (169)
T 1czn_A 70 YDDLDSVNFQGKKVAYFGAGD 90 (169)
T ss_dssp GGGGGGSCCTTCEEEEEEECC
T ss_pred HHHhhhhccCCCEEEEEEECC
Confidence 442111112356776665543
No 175
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=57.84 E-value=44 Score=27.62 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=42.4
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC------CcchHHHHHHHhhcCCCceEEEEcCCchHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~------~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev 182 (302)
++| .+|-+-++|- -+++.++..|++.|+++.-+-|. ++.-+..+++.+
T Consensus 21 ~Mk-IaIgsDhaG~-----~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V-------------------- 74 (166)
T 3s5p_A 21 SMK-VAFASDHGGR-----DLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAV-------------------- 74 (166)
T ss_dssp TCE-EEEEECGGGH-----HHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHH--------------------
T ss_pred ceE-EEEEECchHH-----HHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHH--------------------
Confidence 345 4455555552 23468889999999887655443 333333333333
Q ss_pred HHHHhcCccccccCCccEEEecCCChhhHHHhhh
Q 022147 183 VNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~ 216 (302)
... ....||+=||||++++-+.+
T Consensus 75 ----~~g-------~~d~GIliCGTGiG~sIaAN 97 (166)
T 3s5p_A 75 ----TSG-------RADCCILVCGTGIGISIAAN 97 (166)
T ss_dssp ----HTT-------SCSEEEEEESSSHHHHHHHH
T ss_pred ----HcC-------CCcEEEEEcCCcHHHHHHhh
Confidence 222 44668888888888887765
No 176
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=57.81 E-value=49 Score=27.64 Aligned_cols=40 Identities=8% Similarity=0.095 Sum_probs=26.3
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH 154 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~ 154 (302)
+|+++-+.-.+| +.+. -.+...|.+.|+++.++.|+...+
T Consensus 2 k~IllgvTGs~a---a~k~--~~l~~~L~~~g~~V~vv~T~~A~~ 41 (189)
T 2ejb_A 2 QKIALCITGASG---VIYG--IKLLQVLEELDFSVDLVISRNAKV 41 (189)
T ss_dssp CEEEEEECSSTT---HHHH--HHHHHHHHHTTCEEEEEECHHHHH
T ss_pred CEEEEEEECHHH---HHHH--HHHHHHHHHCCCEEEEEEChhHHH
Confidence 678888864443 3322 245556777799999999886543
No 177
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=57.73 E-value=17 Score=32.27 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=43.0
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG 175 (302)
.+.+.+.+++...+. .-...++ +.++..+++.|+.+.+..+...+...++.+.+...++|+||+++.
T Consensus 62 ~~~~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSN-EYYSESL-QTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp --CCEEEEEESCSSS-HHHHHHH-HHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCCEEEEEeCCCcC-hHHHHHH-HHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch
Confidence 355677777754322 1222233 577788888999888887776333345666666678999998876
No 178
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=57.23 E-value=80 Score=28.78 Aligned_cols=88 Identities=8% Similarity=-0.033 Sum_probs=52.9
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC------CchHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG------DGILVE 181 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG------DGTl~e 181 (302)
+++++++++-. ..|...++. +.+...+...|++++++..... +..++..++. .+|.||++.- -+.+-.
T Consensus 255 ~~~kv~iiy~S--~~GnT~~la-~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~l~--~~D~iiigsP~y~~~~~~~~k~ 328 (414)
T 2q9u_A 255 CQKKVTVVLDS--MYGTTHRMA-LALLDGARSTGCETVLLEMTSS-DITKVALHTY--DSGAVAFASPTLNNTMMPSVAA 328 (414)
T ss_dssp CCSEEEEEECC--SSSHHHHHH-HHHHHHHHHTTCEEEEEEGGGC-CHHHHHHHHH--TCSEEEEECCCBTTBCCHHHHH
T ss_pred cCCeEEEEEEC--CCchHHHHH-HHHHHHHHhCCCeEEEEEcCcC-CHHHHHHHHH--hCCEEEEEcCccCcCchHHHHH
Confidence 46788888754 345666555 6788888888888877654432 3344555554 6898888742 234555
Q ss_pred HHHHHhcCcccccc-CCccEEEecC
Q 022147 182 VVNGLLEREDWNDA-IKVPLGVVPA 205 (302)
Q Consensus 182 vvngL~~~~~~~~~-~~~plgiIP~ 205 (302)
++..+.... . ...+++++-+
T Consensus 329 fld~l~~~~----~~~~K~~~~~~t 349 (414)
T 2q9u_A 329 ALNYVRGLT----LIKGKPAFAFGA 349 (414)
T ss_dssp HHHHHHHHT----TTTTSBEEEEEE
T ss_pred HHHHHHhhc----ccCCCEEEEEEe
Confidence 666554211 1 2456666644
No 179
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=57.18 E-value=18 Score=31.00 Aligned_cols=66 Identities=12% Similarity=0.300 Sum_probs=41.6
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCc-EEEEEeCCcc-hHHHHHHHhhcCCCceEEEEc
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ-FTVQETTQQL-HAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~-~~v~~T~~~~-~a~el~~~~~~~~~d~IVvvG 174 (302)
++.+++.+++...+. .-...++ +.++..+++.|+. +.+..+.... ...++.+.+...++|+||+.+
T Consensus 8 ~~~~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNN-RFYAQII-DGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCCEEEEEESCTTS-HHHHHHH-HHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCEEEEEeCCCCC-hhHHHHH-HHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 456778888754332 2222333 5777888888988 6665554322 223455666667899999998
No 180
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=57.07 E-value=12 Score=27.49 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHh
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVL 162 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~ 162 (302)
..++.+|.+.|++|+.+..+...++.+.+.++
T Consensus 18 ~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~ 49 (92)
T 2lqo_A 18 LRLKTALTANRIAYDEVDIEHNRAAAEFVGSV 49 (92)
T ss_dssp HHHHHHHHHTTCCCEEEETTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEcCCCHHHHHHHHHH
Confidence 46788999999999888777666666655554
No 181
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=57.01 E-value=10 Score=28.68 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.6
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhcc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~~ 106 (302)
+++.|...++++.+.|+++|+..+...
T Consensus 93 ~~~~f~A~s~~e~~~Wi~ai~~~~~~~ 119 (123)
T 1wjm_A 93 KEYLFQAKDEAEMSSWLRVVNAAIASG 119 (123)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999887643
No 182
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=56.64 E-value=6.9 Score=40.98 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=38.0
Q ss_pred HHHHHhhcCCCceEEEEcCCchHHHHHHHHhc----------------CccccccCCccEEEecCCChhhHHH
Q 022147 157 EIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE----------------REDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 157 el~~~~~~~~~d~IVvvGGDGTl~evvngL~~----------------~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
++++.+...+.|.+|++|||||+.-+. .|.+ .+.......+++.-||.=--||++.
T Consensus 267 ~~~~~L~~~gId~LvvIGGDGS~~gA~-~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~g 338 (941)
T 3opy_B 267 KACKNMIDMGIDALIVCGGDGSLTGAD-RFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSS 338 (941)
T ss_dssp HHHHHHHHHTCCEEEEEECHHHHHHHH-HHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSS
T ss_pred HHHHHHHHcCCCEEEEeCCChhHHHHH-HHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCC
Confidence 345666667899999999999998653 2211 0011112368999999888888875
No 183
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=56.58 E-value=34 Score=28.54 Aligned_cols=62 Identities=10% Similarity=0.065 Sum_probs=36.0
Q ss_pred cEEEEEE-cCCCCC---CchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc
Q 022147 110 KRLYIFV-NPFGGK---KIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 110 ~r~~viv-NP~sG~---~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG 174 (302)
.|+++|. +|.-.. +...++ .+.+...++++|.++++..-....+..++.+++. ..|.||++-
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l-~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~--~AD~iV~~~ 78 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTL-TEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFL--WADVVIWQM 78 (204)
T ss_dssp CEEEEEECCC------CHHHHHH-HHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--HCSEEEEEE
T ss_pred cCEEEEEcCCCcccCcCcHHHHH-HHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHH--hCCEEEEEC
Confidence 4555554 887322 222333 3577777888888888777665555666666654 467777653
No 184
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=56.49 E-value=30 Score=26.84 Aligned_cols=68 Identities=25% Similarity=0.278 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc-CCch-----HHHHHHHHhcCccccccCCccEEEecC
Q 022147 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGI-----LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG-GDGT-----l~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
.+...+...|++++..... ..-+..+.+.+...++|.||+.. |-+. +..+.+.++.+ .++|+-++|.
T Consensus 87 ~~~~~~~~~g~~~~~~v~~-G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~------~~~pVlvv~~ 159 (162)
T 1mjh_A 87 NIKKELEDVGFKVKDIIVV-GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKK------SNKPVLVVKR 159 (162)
T ss_dssp HHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHH------CCSCEEEECC
T ss_pred HHHHHHHHcCCceEEEEcC-CCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHh------CCCCEEEEeC
Confidence 3444566678877654432 23345566666666788766542 2332 33456666654 2789999986
Q ss_pred C
Q 022147 206 G 206 (302)
Q Consensus 206 G 206 (302)
.
T Consensus 160 ~ 160 (162)
T 1mjh_A 160 K 160 (162)
T ss_dssp C
T ss_pred C
Confidence 4
No 185
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=56.37 E-value=47 Score=28.73 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=51.3
Q ss_pred cEEEEEEcCCCCCCchhhhHH-HHHHHHHHhcCCcEEEEEeCCc---------------chHHHHH-H--------Hhh-
Q 022147 110 KRLYIFVNPFGGKKIASKIFL-DDVKPLLEDANIQFTVQETTQQ---------------LHAKEIV-K--------VLD- 163 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~-~~v~~~L~~ag~~~~v~~T~~~---------------~~a~el~-~--------~~~- 163 (302)
+|++|++-. .|.-.+-..++ -.....|+.+|+++++.-.+.. .+...+. . .++
T Consensus 24 kkV~ill~~-~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~d 102 (242)
T 3l3b_A 24 LNSAVILAG-CGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQ 102 (242)
T ss_dssp CEEEEECCC-SSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGG
T ss_pred CEEEEEEec-CCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHH
Confidence 688888741 12222222221 1234568889988887654321 0111111 1 122
Q ss_pred --cCCCceEEEEcCCchH--------------------HHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 164 --LSKYDGIVCVSGDGIL--------------------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 164 --~~~~d~IVvvGGDGTl--------------------~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
...||.||+.||.|.. .+.+.....+ ..||+-|=.|.. .+|..
T Consensus 103 v~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~-------gk~IaaIC~G~~-~La~a 167 (242)
T 3l3b_A 103 IRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNA-------KKPIGAVCISPA-VVVAL 167 (242)
T ss_dssp CCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHT-------TCCEEEETTHHH-HHHHH
T ss_pred CCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHc-------CCEEEEECHHHH-HHHHh
Confidence 2469999999998852 2233333332 678998888873 44443
No 186
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.80 E-value=9.8 Score=28.13 Aligned_cols=26 Identities=12% Similarity=0.417 Sum_probs=22.9
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~ 105 (302)
+.+.|...++++.+.|+++|+..+..
T Consensus 85 r~~~l~a~s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 85 RTYFFSAESPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 57889999999999999999998754
No 187
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=55.75 E-value=44 Score=28.54 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCcEEEEE--eCCc-chHHHHHHHhhcCCCceEEEEcCCch-HHHHHHHHhcCccccccCCccEEEec
Q 022147 131 DDVKPLLEDANIQFTVQE--TTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~--T~~~-~~a~el~~~~~~~~~d~IVvvGGDGT-l~evvngL~~~~~~~~~~~~plgiIP 204 (302)
+.++..+++.|+.+.+.. ++.. ..-.++.+.+...++|+||+++.|.. +.+.++.+... .+|+..+-
T Consensus 21 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~~~ 91 (288)
T 1gud_A 21 KGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKK-------GIYLVNLD 91 (288)
T ss_dssp HHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHT-------TCEEEEES
T ss_pred HHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC-------CCeEEEEC
Confidence 466777888898877765 4322 22234455665678999999887754 34556666543 67877663
No 188
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=55.67 E-value=11 Score=30.44 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=47.2
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchH----H
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGIL----V 180 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl----~ 180 (302)
.+++++|++-... |..+++. +.+...|...|++++++.-+.... .+...+|.||++. |+|.+ .
T Consensus 8 ~~~ki~I~Y~S~t--GnT~~~A-~~ia~~l~~~g~~v~~~~~~~~~~-------~~l~~~d~ii~g~pt~g~G~~p~~~~ 77 (167)
T 1ykg_A 8 EMPGITIISASQT--GNARRVA-EALRDDLLAAKLNVKLVNAGDYKF-------KQIASEKLLIVVTSTQGEGEPPEEAV 77 (167)
T ss_dssp ----CEEEEECSS--SHHHHHH-HHHHHHHHHHTCCCEEEEGGGCCG-------GGGGGCSEEEEEEECBGGGBCCGGGH
T ss_pred CCCeEEEEEECCc--hHHHHHH-HHHHHHHHHCCCceEEeehhhCCH-------HHhccCCeEEEEEcccCCCcCChhHH
Confidence 3567888886544 5566544 688888888888777665432111 1224578776654 56654 4
Q ss_pred HHHHHHhcCccccccCCccEEEecCC
Q 022147 181 EVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
++++.|.... .......+++++-+|
T Consensus 78 ~f~~~l~~~~-~~~l~~k~~avfg~G 102 (167)
T 1ykg_A 78 ALHKFLFSKK-APKLENTAFAVFSLG 102 (167)
T ss_dssp HHHHHHTSTT-CCCCTTCEEEEEEEC
T ss_pred HHHHHHHhcc-ccccCCCEEEEEeec
Confidence 4555554310 001224667776554
No 189
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=55.63 E-value=73 Score=24.96 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCc-EEEEEeCCcchHHHHHHHhhcCCCceEEEEc-CCchHHHH-----HHHHhcCccccccCCccEEEe
Q 022147 131 DDVKPLLEDANIQ-FTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVEV-----VNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 131 ~~v~~~L~~ag~~-~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG-GDGTl~ev-----vngL~~~~~~~~~~~~plgiI 203 (302)
+.+...+...|++ ++...... .-+.++.+.+...++|.||+.. |-+.+.+. .+.++.. .++|+-++
T Consensus 84 ~~~~~~~~~~gv~~v~~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~------a~~PVlvV 156 (163)
T 1tq8_A 84 HDAKERAHNAGAKNVEERPIVG-APVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRR------AKVDVLIV 156 (163)
T ss_dssp HHHHHHHHTTTCCEEEEEEECS-SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHH------TTCEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEecC-CHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHh------CCCCEEEE
Confidence 3555667777887 76555432 3355666666666788766553 45555543 3444443 27899999
Q ss_pred cCC
Q 022147 204 PAG 206 (302)
Q Consensus 204 P~G 206 (302)
|..
T Consensus 157 ~~~ 159 (163)
T 1tq8_A 157 HTT 159 (163)
T ss_dssp CCC
T ss_pred eCC
Confidence 854
No 190
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=55.45 E-value=36 Score=30.12 Aligned_cols=111 Identities=13% Similarity=0.041 Sum_probs=62.6
Q ss_pred hhccCCCcEEEEEEcCCCC------CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcC---CCceEE-E
Q 022147 103 IDSFGRPKRLYIFVNPFGG------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS---KYDGIV-C 172 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~sG------~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~---~~d~IV-v 172 (302)
++-..+++++.+|||-..= ...+...=.+.+...|+..|++++++.--...+..+..+++... .+|.+| +
T Consensus 25 Y~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~d~~v~~ 104 (272)
T 1m72_A 25 YNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVA 104 (272)
T ss_dssp CCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred ccCCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 3333456788888874311 12222222368899999999999888877777777777766532 345432 2
Q ss_pred E----------cCCch--HHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 173 V----------SGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 173 v----------GGDGT--l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+ |=||. +.++++.+.......-..++-|-+|-+=-||.+..
T Consensus 105 ~lsHG~~~~i~~~D~~v~l~~i~~~f~~~~cpsL~gKPKlffiqACRg~~~~~ 157 (272)
T 1m72_A 105 VLTHGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDG 157 (272)
T ss_dssp EESCEETTEEECSSSEECTTHHHHTTSTTTCGGGTTSCEEEEEESCSSSBCBC
T ss_pred EcCCCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEeCCCCCcccC
Confidence 2 22442 33444433221111112356688888877777754
No 191
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=55.27 E-value=36 Score=25.56 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCcE-EEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchH---HHHHHHHhcCccccccCCccEEEecCC
Q 022147 131 DDVKPLLEDANIQF-TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL---VEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 131 ~~v~~~L~~ag~~~-~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl---~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
+.+..+.+..|+.+ +.... ...-+..+.+.+...++|.||+..--|.+ ..+.+.++.+ .++|+-++|.+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~lgs~~~~vl~~------~~~pVlvv~~~ 139 (141)
T 1jmv_A 67 KALLDLAESVDYPISEKLSG-SGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNT------IKIDMLVVPLR 139 (141)
T ss_dssp HHHHHHHHHSSSCCCCEEEE-EECHHHHHHHHHHHTTCCEEEEEECCCCHHHHHHHHHHHHTT------CCSEEEEEECC
T ss_pred HHHHHHHHHcCCCceEEEEe-cCCHHHHHHHHHHhcCCCEEEEeCCCchhhhhcchHHHHHhc------CCCCEEEeeCC
Confidence 45566666677764 22221 12234456666666678987776443333 3455666655 37899999864
No 192
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=54.97 E-value=39 Score=30.60 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=61.0
Q ss_pred hhccCC-CcEEEEEEcCCC-----CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc---C-CCceEEE
Q 022147 103 IDSFGR-PKRLYIFVNPFG-----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---S-KYDGIVC 172 (302)
Q Consensus 103 l~~~~r-~~r~~vivNP~s-----G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~---~-~~d~IVv 172 (302)
++-..+ ++++.+|||-.. ....+...=.+.++.+|+..|++++++.--...+..+..+++.. . .+|.+|+
T Consensus 53 Y~m~~~~~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv 132 (316)
T 2fp3_A 53 YKMQSRFNRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMVTSSSYVQNTECFVM 132 (316)
T ss_dssp CCCCCSSCSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEEEECSCCHHHHHHHHHHHHTSHHHHTCSCEEE
T ss_pred ccCCCCCCCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEccCCCHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 433345 788888887542 22222223346889999999998887766666666666655532 2 4564322
Q ss_pred ---------------EcCCch---HHHHHHHHhcCccccccCCccEEEecCCChhhHHHhh
Q 022147 173 ---------------VSGDGI---LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 173 ---------------vGGDGT---l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
.|=||. +.++++.+.......-..++-|-+|-+=-||.+....
T Consensus 133 ~ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~g~ 193 (316)
T 2fp3_A 133 VLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYLVNKPKVLMFPFARGDEYDLGH 193 (316)
T ss_dssp EEESCEECCTTCCEEECTTSCEEEHHHHHHTTSTTTCGGGTTSCEEEEESCC---------
T ss_pred EEccCCCccCCCCEEEeecCcEEeHHHHHHHhccccChhhcCCceEEEEecCCCCcccCCc
Confidence 233564 6666665543221112236779999998888875543
No 193
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=54.87 E-value=65 Score=26.45 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=40.5
Q ss_pred CCCcEEEEEEcCC-------C-CCCchhhhHHHHHHHHHHhcCCcEEEE--EeCCcchHHHHHHHhhcC-CCceEEEEcC
Q 022147 107 GRPKRLYIFVNPF-------G-GKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLS-KYDGIVCVSG 175 (302)
Q Consensus 107 ~r~~r~~vivNP~-------s-G~~~a~~~~~~~v~~~L~~ag~~~~v~--~T~~~~~a~el~~~~~~~-~~d~IVvvGG 175 (302)
.++.|+.||.--. . |+-.-. -...+...|++.|+++... ..+..+...+..+++..+ ++|.||+.||
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Ds--n~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDE--SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCH--HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeeh--HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4566777776432 2 332222 2246788999999876433 334444444444444332 4999999999
Q ss_pred Cc
Q 022147 176 DG 177 (302)
Q Consensus 176 DG 177 (302)
=|
T Consensus 91 ~s 92 (178)
T 2pjk_A 91 TG 92 (178)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 194
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=54.42 E-value=1.5e+02 Score=28.13 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=58.3
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC---CcchHHHHHHHhhcCCCc--eEEEEcCCchHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYD--GIVCVSGDGILVEVVN 184 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~---~~~~a~el~~~~~~~~~d--~IVvvGGDGTl~evvn 184 (302)
.++.||.= ...-..+. ++....|+..|++|++.... .+++..++++++...+.. .|+++||.|.|--|+-
T Consensus 266 ~~V~Ii~g----s~SD~~~~-~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva 340 (425)
T 2h31_A 266 CRVVVLMG----STSDLGHC-EKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMS 340 (425)
T ss_dssp CEEEEEES----CGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHH
T ss_pred CeEEEEec----CcccHHHH-HHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHh
Confidence 45666653 22223344 57888899999999887763 445667788887766673 5777899999999999
Q ss_pred HHhcCccccccCCccEEEecC
Q 022147 185 GLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~ 205 (302)
++.. .|+.-+|.
T Consensus 341 ~~t~---------~PVIgvP~ 352 (425)
T 2h31_A 341 GNTA---------YPVISCPP 352 (425)
T ss_dssp HHCS---------SCEEECCC
T ss_pred ccCC---------CCEEEeeC
Confidence 9964 46666676
No 195
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=54.27 E-value=75 Score=28.31 Aligned_cols=77 Identities=8% Similarity=0.019 Sum_probs=46.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE--EeC--CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~--~T~--~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.+|+.+|..+. ..+.... +.++..|+++|+++... ... ...+....++++...++|.|++.+-|.....+++
T Consensus 140 ~~~ia~i~~~~---~~~~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~ 215 (385)
T 1pea_A 140 GERVVFIGSDY---IYPRESN-HVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYR 215 (385)
T ss_dssp CSEEEEEEESS---HHHHHHH-HHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHH
T ss_pred CcEEEEEeCCC---hHHHHHH-HHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHH
Confidence 47888887532 1222223 56778888889875432 222 2334445566655457898888665556667777
Q ss_pred HHhcC
Q 022147 185 GLLER 189 (302)
Q Consensus 185 gL~~~ 189 (302)
.+.+.
T Consensus 216 ~~~~~ 220 (385)
T 1pea_A 216 AIARR 220 (385)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77543
No 196
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=53.85 E-value=19 Score=30.19 Aligned_cols=46 Identities=22% Similarity=0.456 Sum_probs=31.8
Q ss_pred hHHHHHHHhhcCCCceEEEEcCC-chHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGD-GTl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
.|+++.+.+...++ .||.-||. |..-.+..+.++.. ...+|++|.+
T Consensus 21 ~A~~lg~~La~~g~-~lV~GGg~~GiM~aa~~gA~~~g------G~~iGv~p~~ 67 (191)
T 1t35_A 21 KAAELGVYMAEQGI-GLVYGGSRVGLMGTIADAIMENG------GTAIGVMPSG 67 (191)
T ss_dssp HHHHHHHHHHHTTC-EEEECCCCSHHHHHHHHHHHTTT------CCEEEEEETT
T ss_pred HHHHHHHHHHHCCC-EEEECCCcccHHHHHHHHHHHcC------CeEEEEeCch
Confidence 45667777765443 35555566 88888888887753 6789999986
No 197
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=53.85 E-value=10 Score=28.00 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=22.6
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~ 105 (302)
+.+.|...++++.+.|+++|+..+..
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~~~i~~ 112 (117)
T 1v5u_A 87 RVYNFCAQDVPSAQQWVDRIQSCLSS 112 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHHTTCCC
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhcc
Confidence 57889999999999999999987753
No 198
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=53.80 E-value=41 Score=29.29 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=64.1
Q ss_pred CCCcEEEEEEcCCCC-------CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcC---CCce-EEEE--
Q 022147 107 GRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS---KYDG-IVCV-- 173 (302)
Q Consensus 107 ~r~~r~~vivNP~sG-------~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~---~~d~-IVvv-- 173 (302)
..++++.+|||-..= ...+...=.+.+...|+..|++++++.--...+..+..+++... .+|. ++++
T Consensus 13 ~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~~v~~~ls 92 (250)
T 2j32_A 13 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLS 92 (250)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEES
T ss_pred CCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEECC
Confidence 456778888875211 11222222368899999999999888777777777777666533 3453 3332
Q ss_pred --------cCCc--hHHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 174 --------SGDG--ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 174 --------GGDG--Tl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
|=|| .+.++++.+....-..-..++-|-+|-+=-||.+...
T Consensus 93 HG~~g~i~~~D~~v~l~~i~~~f~~~~cp~L~gKPKlf~iqACRg~~~~~g 143 (250)
T 2j32_A 93 HGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCG 143 (250)
T ss_dssp CEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCSEEECBCC
T ss_pred CCCCCeEEecCCcEEHHHHHHHhccccChhHcCCCeEEEEecccCCcccCC
Confidence 2244 3555555553321111223677889988888887543
No 199
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=53.53 E-value=56 Score=27.25 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCcEEEEEeCCcc------h------H-----HHHH-----HHhhcCCCceEEEEcCCchHH---------
Q 022147 132 DVKPLLEDANIQFTVQETTQQL------H------A-----KEIV-----KVLDLSKYDGIVCVSGDGILV--------- 180 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v~~T~~~~------~------a-----~el~-----~~~~~~~~d~IVvvGGDGTl~--------- 180 (302)
.....|+.+|+++++.-.+... . . ..+. .++....||.|++.||.|...
T Consensus 33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~ 112 (224)
T 1u9c_A 33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQ 112 (224)
T ss_dssp HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHH
Confidence 3456788899888876543211 0 1 1111 112224799999999988641
Q ss_pred HHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 181 EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
+.+.....+ ..+|+-|=.|+. .+|..
T Consensus 113 ~~l~~~~~~-------~k~iaaiC~G~~-~La~a 138 (224)
T 1u9c_A 113 YVLQQFAED-------GRIIAAVCHGPS-GLVNA 138 (224)
T ss_dssp HHHHHHHHT-------TCEEEEETTGGG-GGTTC
T ss_pred HHHHHHHHC-------CCEEEEEChHHH-HHHHc
Confidence 222222222 568888888874 55554
No 200
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=53.21 E-value=13 Score=26.89 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.3
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhcc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~~ 106 (302)
+.+.|...++++.+.|+++|+..+...
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~~ 95 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKASL 95 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 588899999999999999999886543
No 201
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=53.03 E-value=1.2e+02 Score=27.22 Aligned_cols=90 Identities=10% Similarity=0.179 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceE
Q 022147 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGI 170 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~I 170 (302)
..+.+.+...+.+.. ...++++|++-.. .|..+++. +.+...+...|++++++.... .+..++...+. .+|.|
T Consensus 235 ~~~~~~~~~~~~~~~-~~~~kv~i~y~S~--~Gnt~~lA-~~i~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~--~~d~i 307 (402)
T 1e5d_A 235 QCTFAVQKYVEYAEQ-KPTNKVVIFYDSM--WHSTEKMA-RVLAESFRDEGCTVKLMWCKA-CHHSQIMSEIS--DAGAV 307 (402)
T ss_dssp HHHHHHHHHHHHHHC-CCCSEEEEEECCS--SSHHHHHH-HHHHHHHHHTTCEEEEEETTT-SCHHHHHHHHH--TCSEE
T ss_pred CHHHHHHHHHHHhcC-CCCCcEEEEEECC--ChhHHHHH-HHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHH--HCCEE
Confidence 344555554444432 2357888888544 45555544 577778888888887776543 33455555554 68988
Q ss_pred EEEc---CCc---hHHHHHHHHh
Q 022147 171 VCVS---GDG---ILVEVVNGLL 187 (302)
Q Consensus 171 VvvG---GDG---Tl~evvngL~ 187 (302)
|++. |.| .+.++++.+.
T Consensus 308 i~gsp~~~~~~~~~~~~~l~~l~ 330 (402)
T 1e5d_A 308 IVGSPTHNNGILPYVAGTLQYIK 330 (402)
T ss_dssp EEECCCBTTBCCHHHHHHHHHHH
T ss_pred EEECCccCCCchHHHHHHHHHhh
Confidence 8875 333 3555555543
No 202
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=52.87 E-value=89 Score=25.42 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=52.8
Q ss_pred CcEEEEEE-cCCCCCCchhhhHHHHHHHH-HHhcCCcEEEEEeCCc------------chHHHHHHHhhcCCCceEEEEc
Q 022147 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPL-LEDANIQFTVQETTQQ------------LHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 109 ~~r~~viv-NP~sG~~~a~~~~~~~v~~~-L~~ag~~~~v~~T~~~------------~~a~el~~~~~~~~~d~IVvvG 174 (302)
++++++|+ .|+. .+...++. +.+... +...|.+++++.-... .+..++.+++. .+|.||++.
T Consensus 2 Mmkilii~gS~r~-~g~t~~la-~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~--~aD~ii~~s 77 (197)
T 2vzf_A 2 TYSIVAISGSPSR-NSTTAKLA-EYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATC--NADGLIVAT 77 (197)
T ss_dssp CEEEEEEECCSST-TCHHHHHH-HHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHH--HCSEEEEEE
T ss_pred CceEEEEECCCCC-CChHHHHH-HHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHH--HCCEEEEEe
Confidence 45777666 3332 34444444 577777 8878888777664332 23445555554 578888764
Q ss_pred C--CchHHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 175 G--DGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 175 G--DGTl~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
- .|.+...+..++++-........|++++-.|.
T Consensus 78 P~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~tgg 112 (197)
T 2vzf_A 78 PIYKASYTGLLKAFLDILPQFALAGKAALPLATGG 112 (197)
T ss_dssp ECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEEES
T ss_pred CccCCCCCHHHHHHHHhccccccCCCEEEEEEECC
Confidence 2 34456666666554221122345666665543
No 203
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=52.63 E-value=16 Score=33.42 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=41.5
Q ss_pred CcEEEEEEcCCCCCCc-hhhhHHHHHHHHHHhcCCcEEEEEeCC------c----chHHHHHHHhhcCCCceEEE-EcCC
Q 022147 109 PKRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQ------Q----LHAKEIVKVLDLSKYDGIVC-VSGD 176 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~-a~~~~~~~v~~~L~~ag~~~~v~~T~~------~----~~a~el~~~~~~~~~d~IVv-vGGD 176 (302)
+-.-.-|+.|.|+-.. ....+ +.....|+..|+++.+..+.. . ..|.++.+.+.....++|+| .||+
T Consensus 12 ~GD~I~ivaPSs~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 90 (336)
T 3sr3_A 12 YGDTIGIYSPSSPVTYTSPKRF-ERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGGM 90 (336)
T ss_dssp TTCEEEEECSSSCHHHHCHHHH-HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCCS
T ss_pred CCCEEEEEeCCCCccccCHHHH-HHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 3345677899887521 12334 456678899998776543221 1 23345555555556776664 5999
Q ss_pred chH
Q 022147 177 GIL 179 (302)
Q Consensus 177 GTl 179 (302)
|+.
T Consensus 91 g~~ 93 (336)
T 3sr3_A 91 NSN 93 (336)
T ss_dssp CGG
T ss_pred cHH
Confidence 973
No 204
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=52.30 E-value=97 Score=26.49 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=62.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHH------------hhcCCCceEEEEcC
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV------------LDLSKYDGIVCVSG 175 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~------------~~~~~~d~IVvvGG 175 (302)
..++++|| |.|+.. ...+ ..|..+|..+.++..+......+++++ -++.++|.||++-|
T Consensus 30 ~gk~VLVV-----GgG~va---~~ka-~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~ 100 (223)
T 3dfz_A 30 KGRSVLVV-----GGGTIA---TRRI-KGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN 100 (223)
T ss_dssp TTCCEEEE-----CCSHHH---HHHH-HHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC
T ss_pred CCCEEEEE-----CCCHHH---HHHH-HHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC
Confidence 34556655 444432 2234 445556777877765544444455433 12356889999999
Q ss_pred CchHHHHHHHHhcCccccc-----------------cCCccEEEecCCChhhHHHhhh
Q 022147 176 DGILVEVVNGLLEREDWND-----------------AIKVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 176 DGTl~evvngL~~~~~~~~-----------------~~~~plgiIP~GTgN~~A~sL~ 216 (302)
|-.+|+.+-.+.++...-. ..++.|+|--.|.+=.+|+.+-
T Consensus 101 d~~~N~~I~~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR 158 (223)
T 3dfz_A 101 DQAVNKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIK 158 (223)
T ss_dssp CTHHHHHHHHHSCTTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHH
Confidence 9999999998865321100 1156788888888888888773
No 205
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=52.28 E-value=11 Score=28.43 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.4
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhcc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~~ 106 (302)
+++.|...|+++.+.|+++|+..+...
T Consensus 77 ~~y~f~A~s~ee~~~Wi~ai~~~~~~~ 103 (112)
T 3cxb_B 77 PCLELSAESEAEMAEWMQHLCQAVSKG 103 (112)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcc
Confidence 478899999999999999999887643
No 206
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=52.15 E-value=59 Score=28.44 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=42.0
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCch
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
.+.+++.+++... ...-...++ +.++..+++.|+.+.+..+... +...++.+.+...++|+|| .+.+.+
T Consensus 58 ~~~~~Igvi~~~~-~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 127 (330)
T 3ctp_A 58 KNSKTIGLMVPNI-SNPFFNQMA-SVIEEYAKNKGYTLFLCNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQC 127 (330)
T ss_dssp --CCEEEEEESCT-TSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEE-EETCCC
T ss_pred CCCCEEEEEeCCC-CCcHHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEE-ECCCCC
Confidence 3456777777432 222222333 5677788888988877766432 2233556666667899999 887754
No 207
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=51.68 E-value=33 Score=29.19 Aligned_cols=68 Identities=9% Similarity=0.185 Sum_probs=36.4
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCch
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
+.+++.+++. . ...-...+ .+.++..+++.|+++.+..+... +...++.+.+...++|+||+.+.|.+
T Consensus 7 ~~~~Igvi~~-~-~~~~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 7 RSNIIAFIVP-D-QNPFFTEV-LTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp CEEEEEEEES-S-CCHHHHHH-HHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCEEEEEEC-C-CCchHHHH-HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 3445666553 3 21111222 24566667777777766554432 22234555555567888888777653
No 208
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=51.67 E-value=13 Score=29.02 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=47.2
Q ss_pred eEEEEEccCCeEEEec-----C--CcccccceeeEEEEEEcCceEEEEEeecCCCcccccC--CCCceeEeeEEecCCCh
Q 022147 19 ITAMTLTGDGRLRWTD-----G--HQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGG--RAGSVVRKDFVFEPLSE 89 (302)
Q Consensus 19 ~~~~~l~~~~~l~w~~-----~--~~~~~~~~~~vl~~~~~~~~~~i~~~~~~~~~~~c~~--~~~~~~~~~~~~~~~~~ 89 (302)
..-..|+.++.+.|.. . ...++++ ++|-.|......-..+.+.+..+...|++ .+.. .+...|-+.|+
T Consensus 30 ~r~f~l~~~~~~~w~~s~~~~~~~~~~~i~i-~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~~--~k~LdlvA~s~ 106 (131)
T 1mai_A 30 ERFYKLQEDCKTIWQESRKVMRSPESQLFSI-EDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQ--RNTLDLIAPSP 106 (131)
T ss_dssp EEEEEECTTSSEEEECCCCTTCCTTTTEEEG-GGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSS--CCCEEEECSSH
T ss_pred eEEEEECCCCCEEEeCCcCCCCCCcCcEEEH-hhhHHHHCCCCCHHHHhhhhcCCccceEEEEECCC--CceEEEEeCCH
Confidence 3445676777777873 1 1344566 47777765431100111111111223443 1221 46788888999
Q ss_pred HHHHHHHHHHHhhhhc
Q 022147 90 DSKRLWCEKLRDFIDS 105 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~ 105 (302)
++++.|++.|+..+..
T Consensus 107 ~e~~~Wv~gL~~L~~~ 122 (131)
T 1mai_A 107 ADAQHWVQGLRKIIHH 122 (131)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999888753
No 209
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=51.62 E-value=1e+02 Score=26.31 Aligned_cols=104 Identities=12% Similarity=0.062 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCce
Q 022147 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~ 169 (302)
+.+-.|.-.+-... +..=.++-++.| ..+.+.. +++...+...|++++........-+..+.+.+...++|.
T Consensus 21 ~~al~~A~~la~~~---~a~l~ll~v~~~----~~~~~~l-~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dl 92 (290)
T 3mt0_A 21 GLALKRAQLIAGVT---QSHLHLLVCEKR----RDHSAAL-NDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGL 92 (290)
T ss_dssp CHHHHHHHHHHHHH---CCEEEEEEECSS----SCCHHHH-HHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSE
T ss_pred hHHHHHHHHHHHhc---CCeEEEEEeeCc----HHHHHHH-HHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCE
Confidence 34556666654433 222222222333 3444444 566677778899888766533333556666655567886
Q ss_pred EEEEc-CCc-----hHHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 170 IVCVS-GDG-----ILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 170 IVvvG-GDG-----Tl~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
||+.. |.+ .+..+...++.+ .++|+.++|.+.
T Consensus 93 iV~G~~~~~~~~~~~~gs~~~~vl~~------~~~PVlvv~~~~ 130 (290)
T 3mt0_A 93 IIKQHFPDNPLKKAILTPDDWKLLRF------APCPVLMTKTAR 130 (290)
T ss_dssp EEEECCCSCTTSTTSCCHHHHHHHHH------CSSCEEEECCCS
T ss_pred EEEecccCCchhhcccCHHHHHHHhc------CCCCEEEecCCC
Confidence 66542 222 133455566554 278999999544
No 210
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=51.29 E-value=27 Score=28.92 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCCceEEEEcC-CchHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 155 AKEIVKVLDLSKYDGIVCVSG-DGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 155 a~el~~~~~~~~~d~IVvvGG-DGTl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
|.++.+.+...++ .||.-|| -|.--.+..+.++.. ...+|+||..
T Consensus 34 A~~lg~~La~~g~-~lVsGGg~~Gim~aa~~gAl~~g------G~tigVlP~~ 79 (176)
T 2iz6_A 34 ANELGKQIATHGW-ILLTGGRSLGVMHEAMKGAKEAG------GTTIGVLPGP 79 (176)
T ss_dssp HHHHHHHHHHTTC-EEEEECSSSSHHHHHHHHHHHTT------CCEEEEECC-
T ss_pred HHHHHHHHHHCCC-EEEECCCccCHhHHHHHHHHHcC------CEEEEEeCch
Confidence 4455666654443 5677777 788888888887753 5688999865
No 211
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=51.25 E-value=13 Score=27.86 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=22.9
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~ 105 (302)
+.+.|...++++.+.|+++|+..+..
T Consensus 87 r~~~l~a~s~~e~~~W~~al~~~i~~ 112 (125)
T 1eaz_A 87 RTFYVQADSPEEMHSWIKAVSGAIVA 112 (125)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999998764
No 212
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=51.25 E-value=11 Score=27.23 Aligned_cols=26 Identities=15% Similarity=0.462 Sum_probs=22.7
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~ 105 (302)
+.+.|...++++.+.|+++|+..+..
T Consensus 81 r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 81 RTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999988753
No 213
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=50.87 E-value=14 Score=29.45 Aligned_cols=92 Identities=10% Similarity=0.107 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHH-----H-----HHHHhhcCCCceEEEEcCCch
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK-----E-----IVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~-----e-----l~~~~~~~~~d~IVvvGGDGT 178 (302)
.+|+.|++-|.. ....+ ......|+.+|+++++.-.+. +... . ...++....||.|++.||.|.
T Consensus 2 ~~ki~il~~~g~---~~~e~--~~~~~~l~~ag~~v~~vs~~~-~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~ 75 (168)
T 3l18_A 2 SMKVLFLSADGF---EDLEL--IYPLHRIKEEGHEVYVASFQR-GKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAP 75 (168)
T ss_dssp CCEEEEECCTTB---CHHHH--HHHHHHHHHTTCEEEEEESSS-EEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHH
T ss_pred CcEEEEEeCCCc---cHHHH--HHHHHHHHHCCCEEEEEECCC-CEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCH
Confidence 467888887622 22222 245567888888877664432 1100 0 011222235999999999876
Q ss_pred HH--------HHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 179 LV--------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 179 l~--------evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
-. +.+....+ ...+|+-|-.|+ -.+|..
T Consensus 76 ~~~~~~~~l~~~l~~~~~-------~~k~i~aiC~G~-~~La~a 111 (168)
T 3l18_A 76 EIVRLNEKAVMITRRMFE-------DDKPVASICHGP-QILISA 111 (168)
T ss_dssp HHHTTCHHHHHHHHHHHH-------TTCCEEEETTTH-HHHHHT
T ss_pred HHhccCHHHHHHHHHHHH-------CCCEEEEECHhH-HHHHHC
Confidence 32 22222222 267899888887 445554
No 214
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=50.69 E-value=47 Score=30.09 Aligned_cols=108 Identities=12% Similarity=0.028 Sum_probs=63.1
Q ss_pred cCCCcEEEEEEcCCCC------CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcC---CCceEE-E---
Q 022147 106 FGRPKRLYIFVNPFGG------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS---KYDGIV-C--- 172 (302)
Q Consensus 106 ~~r~~r~~vivNP~sG------~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~---~~d~IV-v--- 172 (302)
..+++++.+|||-..= ...+...=.+.+...|+..|++++++.--...+..+..+++... .+|.+| +
T Consensus 56 ~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~D~~vv~ilS 135 (310)
T 2nn3_C 56 NHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLT 135 (310)
T ss_dssp CSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHSSCGGGBSCEEEEEEE
T ss_pred CCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhccCCCCEEEEEEeC
Confidence 3456788888874311 12222222368899999999999888877777777777766532 345322 2
Q ss_pred -------EcCCch--HHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 173 -------VSGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 173 -------vGGDGT--l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.|=||. +.++++.+.......-..++-|-+|-+=-||.+..
T Consensus 136 HG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~ 185 (310)
T 2nn3_C 136 AGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDG 185 (310)
T ss_dssp EEETTEEECSSCEECTHHHHGGGSTTTCGGGTTSCEEEEEEEECCCCCCC
T ss_pred CCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEecccCCcccc
Confidence 334553 44444444322111112356788888877777754
No 215
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=50.65 E-value=12 Score=27.94 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.6
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhcc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~~ 106 (302)
+.+.|...++++.+.|+++|+..+...
T Consensus 96 r~~~l~a~s~~e~~~Wi~al~~~i~~~ 122 (127)
T 1fgy_A 96 VVYRISAPSPEEKEEWMKSIKASISRD 122 (127)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCCHHHHHHHHHHHHHHhccC
Confidence 678899999999999999999987643
No 216
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=50.43 E-value=6.9 Score=30.34 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=22.9
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~ 105 (302)
++|.|...++++.+.|+++|+..+..
T Consensus 100 ~~yl~qA~s~~e~~~Wi~aI~~~i~~ 125 (129)
T 2p0d_A 100 HEFLLQSDHETELRAWHRALRTVIER 125 (129)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999988754
No 217
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=50.04 E-value=20 Score=30.13 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=30.9
Q ss_pred hHHHHHHHhhcCCCceEEEEcCC-chHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGD-GTl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
.|+++.+.+...++ .||.-||. |..-.+..+..+.. ...+|++|.-
T Consensus 32 ~A~~lg~~la~~g~-~lv~GGG~~GlM~a~~~ga~~~G------G~viGv~p~~ 78 (189)
T 3sbx_A 32 LAGAVGAAIAARGW-TLVWGGGHVSAMGAVSSAARAHG------GWTVGVIPKM 78 (189)
T ss_dssp HHHHHHHHHHHTTC-EEEECCBCSHHHHHHHHHHHTTT------CCEEEEEETT
T ss_pred HHHHHHHHHHHCCC-EEEECCCccCHHHHHHHHHHHcC------CcEEEEcCch
Confidence 35566666665444 35555567 88888888887653 6789999863
No 218
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=49.79 E-value=20 Score=33.37 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=42.7
Q ss_pred CcEEEEEEcCCCCCCc-hhhhHHHHHHHHHHhcCCcEEEEEeCCc----------chHHHHHHHhhcCCCceEEE-EcCC
Q 022147 109 PKRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIVC-VSGD 176 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~-a~~~~~~~v~~~L~~ag~~~~v~~T~~~----------~~a~el~~~~~~~~~d~IVv-vGGD 176 (302)
+-.-.-||.|.|+-.. ....+ +.....|+..|+++.+..+-.. ..|.++.+.+.....++|+| .||+
T Consensus 42 ~GD~I~ivaPSs~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGGy 120 (371)
T 3tla_A 42 VGDTIGFFSSSAPATVTAKNRF-FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGGD 120 (371)
T ss_dssp TTCEEEEECSSCCHHHHTHHHH-HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCCS
T ss_pred CcCEEEEEeCCCCccccCHHHH-HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 4456778899887422 23344 4566789999987765433221 23345555555556677666 6999
Q ss_pred chH
Q 022147 177 GIL 179 (302)
Q Consensus 177 GTl 179 (302)
|+.
T Consensus 121 ga~ 123 (371)
T 3tla_A 121 NSN 123 (371)
T ss_dssp CGG
T ss_pred cHH
Confidence 973
No 219
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=49.67 E-value=14 Score=27.09 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.6
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhhhc
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFIDS 105 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l~~ 105 (302)
.+.+.|...++++.+.|+++|+..+..
T Consensus 87 ~~~~~l~a~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 87 QDSYVLMASSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEECCCHHHHHHHHHHHHHHHcc
Confidence 467889999999999999999998754
No 220
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=49.65 E-value=33 Score=25.92 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=37.3
Q ss_pred HHHHHHHhcCC-cEEEEEeCCcchHHHHHH-HhhcCCCceEEEEc-CCch-----HHHHHHHHhcCccccccCCccEEEe
Q 022147 132 DVKPLLEDANI-QFTVQETTQQLHAKEIVK-VLDLSKYDGIVCVS-GDGI-----LVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 132 ~v~~~L~~ag~-~~~v~~T~~~~~a~el~~-~~~~~~~d~IVvvG-GDGT-----l~evvngL~~~~~~~~~~~~plgiI 203 (302)
.+...+...|+ +++...... .-+.++.+ .+...++|.||+.. |-+. +..+.+.++.+ .++|+-++
T Consensus 73 ~~~~~~~~~g~~~~~~~~~~g-~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~------~~~pVlvV 145 (146)
T 3s3t_A 73 QRQQFVATTSAPNLKTEISYG-IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDH------APCNVIVI 145 (146)
T ss_dssp HHHHHHTTSSCCCCEEEEEEE-CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHH------CSSEEEEE
T ss_pred HHHHHHHhcCCcceEEEEecC-ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhcc------CCCCEEEe
Confidence 44455666677 666544332 34556777 66666788776652 3333 22445555554 26788777
Q ss_pred c
Q 022147 204 P 204 (302)
Q Consensus 204 P 204 (302)
|
T Consensus 146 ~ 146 (146)
T 3s3t_A 146 R 146 (146)
T ss_dssp C
T ss_pred C
Confidence 6
No 221
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=49.48 E-value=24 Score=32.29 Aligned_cols=70 Identities=9% Similarity=0.069 Sum_probs=42.7
Q ss_pred CcEEEEEEcCCCCCCc-hhhhHHHHHHHHHHhcCCcEEEEEeCC----------cchHHHHHHHhhcCCCceEEE-EcCC
Q 022147 109 PKRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVC-VSGD 176 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~-a~~~~~~~v~~~L~~ag~~~~v~~T~~----------~~~a~el~~~~~~~~~d~IVv-vGGD 176 (302)
+-.-.-|+.|.++-.. ....+ +.....|+..|+++.+..+-. ...|.++.+.+.....++|+| .||+
T Consensus 11 ~GD~I~ivaPS~~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 89 (331)
T 4e5s_A 11 KGDEIRVISPSCSLSIVSTENR-RLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGY 89 (331)
T ss_dssp TTCEEEEECSSSCGGGSCHHHH-HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCS
T ss_pred CcCEEEEEeCCCCccccCHHHH-HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 3345677899887541 12334 456678999998776544321 123445555555566777666 6999
Q ss_pred chH
Q 022147 177 GIL 179 (302)
Q Consensus 177 GTl 179 (302)
|+.
T Consensus 90 g~~ 92 (331)
T 4e5s_A 90 NSN 92 (331)
T ss_dssp CGG
T ss_pred cHH
Confidence 974
No 222
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=49.23 E-value=1.2e+02 Score=25.65 Aligned_cols=88 Identities=14% Similarity=0.175 Sum_probs=45.4
Q ss_pred CCcEEEEEEcCCCC-CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 108 RPKRLYIFVNPFGG-KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 108 r~~r~~vivNP~sG-~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
..+|+.|| |.+. ...... +...+...|+..|+++ ..+....+.. +.+. +.|.|++-||+ ....++.|
T Consensus 30 ~~~~i~iI--~~a~~~~~~~~-~~~~~~~al~~lG~~~--~~v~~~~d~~---~~l~--~ad~I~lpGG~--~~~~~~~l 97 (229)
T 1fy2_A 30 GRRSAVFI--PFAGVTQTWDE-YTDKTAEVLAPLGVNV--TGIHRVADPL---AAIE--KAEIIIVGGGN--TFQLLKES 97 (229)
T ss_dssp TCCEEEEE--CTTCCSSCHHH-HHHHHHHHHGGGTCEE--EETTSSSCHH---HHHH--HCSEEEECCSC--HHHHHHHH
T ss_pred CCCeEEEE--ECCCCCCCHHH-HHHHHHHHHHHCCCEE--EEEeccccHH---HHHh--cCCEEEECCCc--HHHHHHHH
Confidence 34566666 5553 223322 3467888899988754 4443333322 2232 36777776655 44555555
Q ss_pred hcCccccc-----cCCccEEEecCCC
Q 022147 187 LEREDWND-----AIKVPLGVVPAGT 207 (302)
Q Consensus 187 ~~~~~~~~-----~~~~plgiIP~GT 207 (302)
.+..-.+. ....|+.=+-+|.
T Consensus 98 ~~~gl~~~l~~~~~~G~p~~G~sAG~ 123 (229)
T 1fy2_A 98 RERGLLAPMADRVKRGALYIGWSAGA 123 (229)
T ss_dssp HHTTCHHHHHHHHHTTCEEEEETHHH
T ss_pred HHCChHHHHHHHHHcCCEEEEECHHH
Confidence 44321100 1246777677665
No 223
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=49.20 E-value=89 Score=29.13 Aligned_cols=69 Identities=13% Similarity=0.038 Sum_probs=49.3
Q ss_pred hhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCC
Q 022147 101 DFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 101 ~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGD 176 (302)
..+......+++.||+|..+|++.-. +. +.++.+++++|.++-++......-+ ++..-+.|+.|.+|=-
T Consensus 256 ~~I~kA~dA~~~GIIvgTLg~Q~~~~-~~-~~L~~ll~~~Gkk~y~i~vg~inp~-----KLanF~iD~fV~vaCP 324 (378)
T 3lzd_A 256 AQIAKAMDAKKFGVIVSIKKGQLRLA-EA-KRIVKLLKKHGREARLIVMNDVNYH-----KLEGFPFEAYVVVACP 324 (378)
T ss_dssp HHHHHHTTCCEEEEEEECSTTTCCHH-HH-HHHHHHHHHTTCEEEEEEESSCCHH-----HHTTSCCSEEEECSCT
T ss_pred HHHHHHhcCCEEEEEEeCCccCCCHH-HH-HHHHHHHHHcCCcEEEEEeCCCCHH-----HHhCCCCCEEEEecCC
Confidence 33445566789999999999988764 44 6899999999998877776665543 2222247887766644
No 224
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=49.18 E-value=11 Score=28.79 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=22.2
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+++.|..+++++.+.|+++|+..+.
T Consensus 100 r~~~l~A~s~~e~~~Wi~ai~~~i~ 124 (128)
T 2rlo_A 100 QTWHFEAASFEERDAWVQAIESQIL 124 (128)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 6788999999999999999988764
No 225
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=49.04 E-value=37 Score=28.14 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=43.0
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC------cchHHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~------~~~a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
.++| .+|-+-++|-. +.+.++..|++.|+++.-+-|.. +.-+..+++.+
T Consensus 19 ~~Mk-IaIgsDhaG~~-----lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V------------------- 73 (169)
T 3ph3_A 19 SHMK-IGIGSDHGGYN-----LKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAV------------------- 73 (169)
T ss_dssp --CE-EEEEECGGGHH-----HHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHH-------------------
T ss_pred CCCE-EEEEeCchHHH-----HHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHH-------------------
Confidence 3455 44556665532 34688899999998776543322 22333333333
Q ss_pred HHHHHhcCccccccCCccEEEecCCChhhHHHhhh
Q 022147 182 VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~ 216 (302)
... ....||+=||||++++-+.+
T Consensus 74 -----~~g-------~~d~GIliCGTGiG~sIaAN 96 (169)
T 3ph3_A 74 -----KSG-------ECDRGIVICGTGLGISIAAN 96 (169)
T ss_dssp -----HTT-------SSSEEEEEESSSHHHHHHHT
T ss_pred -----HcC-------CCCEEEEEcCCcHHHHHHhh
Confidence 222 44678889999999888775
No 226
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=48.92 E-value=52 Score=25.93 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=45.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHHHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~evvngL 186 (302)
++++|++=..+ |..+++. +.+...+... .++++.-..... . +...+|.||++. |+|.+...+..+
T Consensus 2 mkilIiY~S~t--GnT~~vA-~~ia~~l~~~--~v~~~~~~~~~~-----~--~l~~~d~ii~g~p~y~~g~~p~~~~~f 69 (169)
T 1obo_A 2 KKIGLFYGTQT--GKTESVA-EIIRDEFGND--VVTLHDVSQAEV-----T--DLNDYQYLIIGCPTLNIGELQSDWEGL 69 (169)
T ss_dssp CSEEEEECCSS--SHHHHHH-HHHHHHHCTT--TEEEEETTTCCG-----G--GGGGCSEEEEEEEEETTTEECHHHHHH
T ss_pred CeEEEEEECCC--chHHHHH-HHHHHHhCcC--CcEEEEcccCCH-----H--HHhhCCEEEEEEeeCCCCcCCHHHHHH
Confidence 56788875444 4555544 5777777654 455554332211 1 234688877765 677665555545
Q ss_pred hcCccccccCCccEEEecCCC
Q 022147 187 LEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GT 207 (302)
+..-........+++++-+|.
T Consensus 70 l~~l~~~~l~~k~~~~f~tg~ 90 (169)
T 1obo_A 70 YSELDDVDFNGKLVAYFGTGD 90 (169)
T ss_dssp HTTGGGCCCTTCEEEEEEECC
T ss_pred HHHhhhcCcCCCEEEEEEECC
Confidence 443111112345666665543
No 227
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=47.95 E-value=17 Score=26.77 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=22.8
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~ 105 (302)
+.+.|...++++.+.|+++|+..+..
T Consensus 77 r~~~l~a~s~~e~~~Wi~ai~~~~~~ 102 (113)
T 1pls_A 77 QDHFFQAAFLEERDAWVRDINKAIKC 102 (113)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 67889999999999999999998753
No 228
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=47.94 E-value=83 Score=26.86 Aligned_cols=92 Identities=11% Similarity=0.156 Sum_probs=57.2
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-cchHHHHHHHhhc-----CCCceEEEEcCCchHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDL-----SKYDGIVCVSGDGILVE 181 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-~~~a~el~~~~~~-----~~~d~IVvvGGDGTl~e 181 (302)
..+++.+|..|..- ......+ +-++..|+++|+.+.+..... .+.+.+.++++.. ..+|+|+ +..|.+-..
T Consensus 130 G~~~I~~i~~~~~~-~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g 206 (295)
T 3hcw_A 130 GVDELIFITEKGNF-EVSKDRI-QGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLA 206 (295)
T ss_dssp CCSEEEEEEESSCC-HHHHHHH-HHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHH
T ss_pred CCccEEEEcCCccc-hhHHHHH-HHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHH
Confidence 45788888766432 2233333 467778889999887665543 3344555555432 1466654 688988888
Q ss_pred HHHHHhcCccccccCCcc--EEEecCCC
Q 022147 182 VVNGLLEREDWNDAIKVP--LGVVPAGT 207 (302)
Q Consensus 182 vvngL~~~~~~~~~~~~p--lgiIP~GT 207 (302)
+++.|.+.. .++| +.++-.+-
T Consensus 207 ~~~al~~~g-----~~vP~di~vig~D~ 229 (295)
T 3hcw_A 207 ILSVLYELN-----IEIPKDVMTATFND 229 (295)
T ss_dssp HHHHHHHTT-----CCTTTTEEEEEECC
T ss_pred HHHHHHHcC-----CCCCCceEEEEeCC
Confidence 999987763 2444 67766553
No 229
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=47.86 E-value=19 Score=26.24 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=22.6
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhhh
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
.+.+.|...++++.+.|+++|+....
T Consensus 78 ~~~~~~~a~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 78 MVFYVFKADDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 46788999999999999999988753
No 230
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=47.64 E-value=13 Score=26.99 Aligned_cols=24 Identities=4% Similarity=0.268 Sum_probs=21.1
Q ss_pred eeEEecCCChHHHHHHHHHHHhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l 103 (302)
+.+.|...++++.+.|+++|+..+
T Consensus 85 ~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 85 VHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHh
Confidence 568899999999999999998765
No 231
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=47.61 E-value=65 Score=29.42 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=47.2
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
++.+.+.|++ |.. ..-...++ +.++..+++.|..+.+..++.... ..+.+...++|+||+...| .++++.+
T Consensus 23 ~~s~~Igvv~-~~~-~~f~~~l~-~gi~~~a~~~g~~~~i~~~~~~~~---~i~~l~~~~vDGiIi~~~~---~~~~~~l 93 (412)
T 4fe7_A 23 TKRHRITLLF-NAN-KAYDRQVV-EGVGEYLQASQSEWDIFIEEDFRA---RIDKIKDWLGDGVIADFDD---KQIEQAL 93 (412)
T ss_dssp CCCEEEEEEC-CTT-SHHHHHHH-HHHHHHHHHHTCCEEEEECC-CC-----------CCCSEEEEETTC---HHHHHHH
T ss_pred CCCceEEEEe-CCc-chhhHHHH-HHHHHHHHhcCCCeEEEecCCccc---hhhhHhcCCCCEEEEecCC---hHHHHHH
Confidence 4567788888 522 22222333 577788888899888877654332 3445555689999984332 3556655
Q ss_pred hcCccccccCCccEEEecC
Q 022147 187 LEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (302)
... ++|+..+-.
T Consensus 94 ~~~-------~iPvV~i~~ 105 (412)
T 4fe7_A 94 ADV-------DVPIVGVGG 105 (412)
T ss_dssp TTC-------CSCEEEEEE
T ss_pred hhC-------CCCEEEecC
Confidence 543 678776643
No 232
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.24 E-value=17 Score=27.05 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.3
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...++++.+.|+++|+..+.
T Consensus 77 r~~~l~a~s~~e~~~Wi~al~~~~~ 101 (114)
T 2da0_A 77 RTYHFQAEDEQDYVAWISVLTNSKE 101 (114)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999988765
No 233
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=46.67 E-value=36 Score=29.82 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=58.6
Q ss_pred cCCCcEEEEEEcCCCC------CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcC---CCceEEE----
Q 022147 106 FGRPKRLYIFVNPFGG------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS---KYDGIVC---- 172 (302)
Q Consensus 106 ~~r~~r~~vivNP~sG------~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~---~~d~IVv---- 172 (302)
..+++++.+|||-..= ...+...=.+.++..|+..|++++++.--...+..+..+++... .+|.+|+
T Consensus 16 ~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~v~~~ls 95 (259)
T 3sir_A 16 RHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSASQNHSDSDCILVAILS 95 (259)
T ss_dssp CSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHTSCCTTEEEEEEEEEE
T ss_pred CCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEEec
Confidence 3456788877764321 11111112357899999999999988877777777777766532 3454332
Q ss_pred -------EcCCchHHHHHHHHhcCcc----ccccCCccEEEecCCChhhHHHh
Q 022147 173 -------VSGDGILVEVVNGLLERED----WNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 173 -------vGGDGTl~evvngL~~~~~----~~~~~~~plgiIP~GTgN~~A~s 214 (302)
.|=||.+. ++.|...=. ..-..++-|-+|-+=-||.+...
T Consensus 96 HG~~g~i~~~D~~v~--l~~i~~~f~~~~cpsL~gKPKlf~iQACRG~~~~~g 146 (259)
T 3sir_A 96 HGEMGYIYAKDTQYK--LDNIWSFFTANHCPSLAGKPKLFFIQACQGDRLDGG 146 (259)
T ss_dssp CTTCCCCCCTTHHHH--HHHTTGGGSTTTCGGGSSSCEEEEEEEETTSCEEC-
T ss_pred CCCCCeEEeCCCcEE--HHHHHHHhhhccCccccCCCCEEEEecCCCCcccCC
Confidence 23355422 233322110 01122566888888777766543
No 234
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=46.54 E-value=70 Score=28.29 Aligned_cols=28 Identities=7% Similarity=0.180 Sum_probs=22.6
Q ss_pred CCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 166 ~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
..|.+|+.|| +|+.|++- ..+|..+||.
T Consensus 225 ~aDlvI~~gG-~T~~E~~~-----------~g~P~i~ip~ 252 (282)
T 3hbm_A 225 ESNKLIISAS-SLVNEALL-----------LKANFKAICY 252 (282)
T ss_dssp TEEEEEEESS-HHHHHHHH-----------TTCCEEEECC
T ss_pred HCCEEEECCc-HHHHHHHH-----------cCCCEEEEeC
Confidence 4588999999 99999764 3678888885
No 235
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=46.38 E-value=7.5 Score=27.81 Aligned_cols=23 Identities=9% Similarity=0.397 Sum_probs=20.0
Q ss_pred eeEEecCCChHHHHHHHHHHHhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDF 102 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~ 102 (302)
+.+.|..+|+++.+.|+++|+++
T Consensus 70 r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 70 SVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp EEEEEECCSSCCTHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHhh
Confidence 56889999999999999999864
No 236
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=46.25 E-value=18 Score=27.10 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=23.1
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~ 105 (302)
+.+.|...++++.+.|+++|+..+..
T Consensus 88 r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 88 RTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998764
No 237
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=45.96 E-value=25 Score=30.13 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=27.6
Q ss_pred hHHHHHHHhhcCCCceEEEEcCC-chHHHHHHHHhcCccccccCCccEEEec
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGD-GTl~evvngL~~~~~~~~~~~~plgiIP 204 (302)
.|+++.+.+...++ .||.-||. |..-.+..+.++.. ...+|++|
T Consensus 29 ~A~~lg~~LA~~g~-~lV~GGg~~GlM~aa~~gA~~~G------G~~iGv~p 73 (216)
T 1ydh_A 29 AAIELGNELVKRKI-DLVYGGGSVGLMGLISRRVYEGG------LHVLGIIP 73 (216)
T ss_dssp HHHHHHHHHHHTTC-EEEECCCSSHHHHHHHHHHHHTT------CCEEEEEE
T ss_pred HHHHHHHHHHHCCC-EEEECCCcccHhHHHHHHHHHcC------CcEEEEec
Confidence 34455555554443 45666676 77777777776653 56888887
No 238
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=45.92 E-value=60 Score=26.95 Aligned_cols=80 Identities=8% Similarity=0.054 Sum_probs=47.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC-CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~-~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
.+|+.+|..+..+.......+ +-....++++|+.++..... ..+.+.+.++++...++|+|+ +..|.....+++.|.
T Consensus 115 ~~~I~~i~~~~~~~~~~~~R~-~gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~ 192 (255)
T 1byk_A 115 HRNISYLGVPHSDVTTGKRRH-EAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQ 192 (255)
T ss_dssp CCCEEEECCCTTSTTTTHHHH-HHHHHHHHHTTCCCEEECCCSCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCcccHHHHH-HHHHHHHHHcCCCcceeecCCccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHH
Confidence 467888775532222223233 45667788888876544332 233344555554434566655 578888888899887
Q ss_pred cCc
Q 022147 188 ERE 190 (302)
Q Consensus 188 ~~~ 190 (302)
+..
T Consensus 193 ~~g 195 (255)
T 1byk_A 193 EQR 195 (255)
T ss_dssp HTT
T ss_pred HcC
Confidence 763
No 239
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=45.71 E-value=25 Score=28.65 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=50.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc---------hHHH-----HHHHhhcCCCceEEEE
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL---------HAKE-----IVKVLDLSKYDGIVCV 173 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~---------~a~e-----l~~~~~~~~~d~IVvv 173 (302)
.++++.|++.| |- ....+ ......|+.+++++++.-.+... +... ...++....||.||+.
T Consensus 8 ~~~~v~il~~~--g~-~~~e~--~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livp 82 (190)
T 2vrn_A 8 TGKKIAILAAD--GV-EEIEL--TSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLP 82 (190)
T ss_dssp TTCEEEEECCT--TC-BHHHH--HHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEEC
T ss_pred CCCEEEEEeCC--CC-CHHHH--HHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEEC
Confidence 45788888875 22 22222 24456788888887766543210 0000 0112222469999999
Q ss_pred cCCchHH---------HHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 174 SGDGILV---------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 174 GGDGTl~---------evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
||.+... +.+..... ...+|+-|=.|.. .+|..
T Consensus 83 GG~~~~~~~~~~~~l~~~l~~~~~-------~gk~i~aiC~G~~-~La~a 124 (190)
T 2vrn_A 83 GGTVNPDKLRLEEGAMKFVRDMYD-------AGKPIAAICHGPW-SLSET 124 (190)
T ss_dssp CCTHHHHHHTTCHHHHHHHHHHHH-------TTCCEEEC-CTTH-HHHHT
T ss_pred CCchhHHHHhhCHHHHHHHHHHHH-------cCCEEEEECHhHH-HHHhC
Confidence 9974332 22222222 2678998888884 55554
No 240
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.62 E-value=16 Score=27.42 Aligned_cols=25 Identities=8% Similarity=0.384 Sum_probs=22.4
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...++++.+.|+++|+..+.
T Consensus 80 r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (120)
T 2d9x_A 80 EQYKLRATDAKERQHWVSRLQICTQ 104 (120)
T ss_dssp CCEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6788999999999999999998765
No 241
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=45.46 E-value=22 Score=28.38 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCC-------------ceEEEEcCCchHHH
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKY-------------DGIVCVSGDGILVE 181 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~-------------d~IVvvGGDGTl~e 181 (302)
+.+..+|+++++.|+++.+.....+.+.++.+..... -.++++-||--+++
T Consensus 5 ~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~~~lvvv~gd~~ld~ 68 (152)
T 3op6_A 5 KKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKTVIIKMDGRLAMVVLPASDHITF 68 (152)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSCCEEEEEEEETTEEEEEEEETTCCCCH
T ss_pred HHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhheEEEEEEEECCeEEEEEECCCCeECH
Confidence 4788999999999999888876666676665432211 14677888887764
No 242
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=45.21 E-value=17 Score=29.37 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.5
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhcc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~~ 106 (302)
+.+.|..+++++.+.|+++|++.+...
T Consensus 97 rt~~l~A~s~~e~~~Wi~aL~~~i~~n 123 (164)
T 2lul_A 97 NTLYIFAPSPQSRDLWVKKLKEEIKNN 123 (164)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHHC
Confidence 568899999999999999999998643
No 243
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=45.09 E-value=58 Score=26.38 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
.++.++......|++++.+.+.+.++..+...+....++|.||+
T Consensus 29 i~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiII 72 (149)
T 2uyg_A 29 LEALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVL 72 (149)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEE
Confidence 34677777778899999999999998888777765434777663
No 244
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.83 E-value=17 Score=26.59 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=22.0
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...++++.+.|+++|+..+.
T Consensus 79 r~~~l~a~s~~e~~~Wi~ai~~~~~ 103 (115)
T 2dn6_A 79 KTFEISASDKKKKQEWIQAIHSTIH 103 (115)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 5688999999999999999998875
No 245
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=44.52 E-value=1e+02 Score=28.12 Aligned_cols=87 Identities=14% Similarity=0.045 Sum_probs=44.4
Q ss_pred CCCcEEEEEEcCC--CCCCchhhhHHHHHHHHHHhcC--CcEEEEEeCCc-chHHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 107 GRPKRLYIFVNPF--GGKKIASKIFLDDVKPLLEDAN--IQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 107 ~r~~r~~vivNP~--sG~~~a~~~~~~~v~~~L~~ag--~~~~v~~T~~~-~~a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
..+.++.+|+ |- .-++--...+ +-++...++.| +++.+.++... .+..+..+.+...++|.|++.| -+. .+
T Consensus 24 ~~~~kIglv~-~g~i~D~~f~~~~~-~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g-~~~-~~ 99 (356)
T 3s99_A 24 EEKLKVGFIY-IGPPGDFGWTYQHD-QARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTS-FGY-MD 99 (356)
T ss_dssp --CEEEEEEC-SSCGGGSSHHHHHH-HHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECS-GGG-HH
T ss_pred CCCCEEEEEE-ccCCCchhHHHHHH-HHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECC-HHH-HH
Confidence 3456788888 41 1111112233 35556666667 55544444332 2445566777777899777665 333 33
Q ss_pred HHHHHhc-CccccccCCccEEEe
Q 022147 182 VVNGLLE-REDWNDAIKVPLGVV 203 (302)
Q Consensus 182 vvngL~~-~~~~~~~~~~plgiI 203 (302)
.+..+.. .| ++|+.++
T Consensus 100 ~~~~vA~~~P------dv~fv~i 116 (356)
T 3s99_A 100 PTVKVAKKFP------DVKFEHA 116 (356)
T ss_dssp HHHHHHTTCT------TSEEEEE
T ss_pred HHHHHHHHCC------CCEEEEE
Confidence 3444333 33 4566665
No 246
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=44.32 E-value=1.3e+02 Score=24.74 Aligned_cols=72 Identities=11% Similarity=-0.020 Sum_probs=46.3
Q ss_pred EEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHH---------------HHhhcCCCceEEEEcCC
Q 022147 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV---------------KVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~---------------~~~~~~~~d~IVvvGGD 176 (302)
+..|.|+++|-|+..- .-.+...|...| ++-++-.+..+.+.... +.+ ...||.||+=.+-
T Consensus 2 vI~v~s~KGGvGKTT~--a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l-~~~yD~viiD~p~ 77 (209)
T 3cwq_A 2 IITVASFKGGVGKTTT--AVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKY-APKYQNIVIDTQA 77 (209)
T ss_dssp EEEEEESSTTSSHHHH--HHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHH-GGGCSEEEEEEEC
T ss_pred EEEEEcCCCCCcHHHH--HHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHh-hhcCCEEEEeCCC
Confidence 5678899999988752 347778888889 88888777766655432 223 2468887775544
Q ss_pred c-hHHHHHHHHh
Q 022147 177 G-ILVEVVNGLL 187 (302)
Q Consensus 177 G-Tl~evvngL~ 187 (302)
| .-....+.+.
T Consensus 78 ~~~~~~~~~~l~ 89 (209)
T 3cwq_A 78 RPEDEDLEALAD 89 (209)
T ss_dssp CCSSSHHHHHHH
T ss_pred CcCcHHHHHHHH
Confidence 4 3233344443
No 247
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=44.04 E-value=17 Score=26.64 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=21.5
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhh
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFI 103 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l 103 (302)
.+.+.|...++++.+.|+++|++..
T Consensus 86 ~r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 86 GKTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 3678899999999999999998764
No 248
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.73 E-value=22 Score=27.21 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=22.0
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|..+++++.+.|+++|+....
T Consensus 90 r~~~l~A~s~~e~~~Wi~al~~a~~ 114 (130)
T 2d9v_A 90 SRLHLCAETRDDAIAWKTALMEANS 114 (130)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 4688999999999999999998764
No 249
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=43.70 E-value=19 Score=27.83 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=22.3
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
++|.|.++++++.+.|+++|+....
T Consensus 96 r~y~l~A~s~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 96 QRYFLQANDQKDLKDWVEALNQASK 120 (126)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh
Confidence 6799999999999999999988764
No 250
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=43.45 E-value=67 Score=25.81 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=23.4
Q ss_pred CcEEEEEE-cCCCCCCchhhhHHHHHHHHHHhcC--CcEEEEEe
Q 022147 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDAN--IQFTVQET 149 (302)
Q Consensus 109 ~~r~~viv-NP~sG~~~a~~~~~~~v~~~L~~ag--~~~~v~~T 149 (302)
|+|+++|+ .|...++...++. +.+...++++| .+++++..
T Consensus 1 Mmkilii~~S~~~~~s~t~~la-~~~~~~l~~~g~~~~v~~~dl 43 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLT-DYFIEQWREKHVADEITVRDL 43 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHH-HHHHHHHHHHCTTCEEEEEET
T ss_pred CCeEEEEEeCCCCCCChHHHHH-HHHHHHHHHhCCCCeEEEEec
Confidence 35666655 5543134455444 57777788765 66766654
No 251
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=43.40 E-value=1.1e+02 Score=24.89 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEE--EEeCCcchHHHHHHHhh-cCCCceEEEEc--CCch-----H
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLD-LSKYDGIVCVS--GDGI-----L 179 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v--~~T~~~~~a~el~~~~~-~~~~d~IVvvG--GDGT-----l 179 (302)
.|+.|++-.+.. .... +-....|..+|...++ +.....-+..-.++.+. ..+||.||++| |+-. -
T Consensus 3 ~ri~IV~arfn~----~~Ll-~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~~~~yDavIaLG~VG~T~Hfd~Va 77 (156)
T 2b99_A 3 KKVGIVDTTFAR----VDMA-SIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLEEEGCDIVMALGMPGKAEKDKVCA 77 (156)
T ss_dssp CEEEEEEESSCS----SCCH-HHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHHHSCCSEEEEEECCCSSHHHHHHH
T ss_pred cEEEEEEEecch----HHHH-HHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccCCcchhHHHH
Confidence 478888866554 2234 4556677778875443 34444445444455554 36899999887 5443 3
Q ss_pred HHHHHHHhcCccccccCCccEEEe
Q 022147 180 VEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiI 203 (302)
+++.+||++-.- ...+|++.-
T Consensus 78 ~~vs~Gl~~v~L---~~~vPV~~g 98 (156)
T 2b99_A 78 HEASLGLMLAQL---MTNKHIIEV 98 (156)
T ss_dssp HHHHHHHHHHHH---HHTCCEEEE
T ss_pred HHHHHHHHHHHh---hhCCCEEEE
Confidence 456677765321 125677654
No 252
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=43.25 E-value=27 Score=29.58 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=30.7
Q ss_pred hHHHHHHHhhcCCCceEEEEcCC-chHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGD-GTl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
.|+++.+.+...++ .||..||. |..-.+..+..+.. ...+|++|..
T Consensus 41 ~A~~lg~~La~~g~-~lV~GGG~~GlM~a~~~gA~~~G------G~viGv~p~~ 87 (199)
T 3qua_A 41 LAAEVGSSIAARGW-TLVSGGGNVSAMGAVAQAARAKG------GHTVGVIPKA 87 (199)
T ss_dssp HHHHHHHHHHHTTC-EEEECCBCSHHHHHHHHHHHHTT------CCEEEEEEGG
T ss_pred HHHHHHHHHHHCCC-EEEECCCccCHHHHHHHHHHHcC------CcEEEEeCch
Confidence 34556666655443 45666676 88888888887653 5788999874
No 253
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=43.21 E-value=47 Score=29.51 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=25.3
Q ss_pred cCCCceEEEEcCCchH---------HHHHHHHhcCccccccCCccEEEecCCCh
Q 022147 164 LSKYDGIVCVSGDGIL---------VEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (302)
Q Consensus 164 ~~~~d~IVvvGGDGTl---------~evvngL~~~~~~~~~~~~plgiIP~GTg 208 (302)
...||.|++.||-|+. .+++....++ ..+|+-|=.|..
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~-------gk~VaaIC~Gp~ 189 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKN-------DRFVISLCHGPA 189 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHT-------TCEEEEETTGGG
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHc-------CCEEEEECccHH
Confidence 3579999999998875 1222322322 568888888774
No 254
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=43.01 E-value=85 Score=24.52 Aligned_cols=68 Identities=13% Similarity=0.030 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc-CCchHHH-----HHHHHhcCccccccCCccEEEecC
Q 022147 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVE-----VVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG-GDGTl~e-----vvngL~~~~~~~~~~~~plgiIP~ 205 (302)
.+...+...|++++...... .-+..+.+.+...++|.||+.. |-+.+.+ +.+.++.+ .++|+-++|.
T Consensus 91 ~~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~------a~~pVlvv~~ 163 (175)
T 2gm3_A 91 FFVNKCHEIGVGCEAWIKTG-DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKH------AECPVMTIKR 163 (175)
T ss_dssp HHHHHHHHHTCEEEEEEEES-CHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHH------CSSCEEEEEC
T ss_pred HHHHHHHHCCCceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhC------CCCCEEEEcC
Confidence 34445666788776544332 2344566666555788766552 4555443 34555554 2789999996
Q ss_pred C
Q 022147 206 G 206 (302)
Q Consensus 206 G 206 (302)
.
T Consensus 164 ~ 164 (175)
T 2gm3_A 164 N 164 (175)
T ss_dssp C
T ss_pred C
Confidence 5
No 255
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=42.95 E-value=65 Score=26.23 Aligned_cols=95 Identities=20% Similarity=0.331 Sum_probs=58.8
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc------CCCceEEEEc----CCch-
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL------SKYDGIVCVS----GDGI- 178 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~------~~~d~IVvvG----GDGT- 178 (302)
.|+.|+.-.+--. -..+.. +-....|..+|.+++++.....-+..-.++.+.. .+||+||++| |+-.
T Consensus 13 ~ri~IV~arfn~~-I~~~Ll-~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~H 90 (157)
T 2i0f_A 13 PHLLIVEARFYDD-LADALL-DGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYH 90 (157)
T ss_dssp CEEEEEEECSSHH-HHHHHH-HHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSST
T ss_pred cEEEEEEEeCcHH-HHHHHH-HHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchH
Confidence 5788887654332 222333 4556677788877888877777776666666543 5799999998 5443
Q ss_pred ----HHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 179 ----LVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 179 ----l~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
-+++.+||++-.- +...++-+|+|...|
T Consensus 91 fd~Va~~v~~gl~~vsl-~~~vPV~~GVLT~~~ 122 (157)
T 2i0f_A 91 FDIVSNESCRALTDLSV-EESIAIGNGILTVEN 122 (157)
T ss_dssp THHHHHHHHHHHHHHHH-HTTCCEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHh-hcCCCEEEEEeCCCC
Confidence 4567777765321 112345567776653
No 256
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=42.91 E-value=1.2e+02 Score=26.87 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=47.3
Q ss_pred CCcEEEEEEcCCCCCCchhhhHH---HHHHHHHHhcCCcEEEEEeCCcc--hHHHHHHHhhcCCCceEEEEcCCchHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFL---DDVKPLLEDANIQFTVQETTQQL--HAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~---~~v~~~L~~ag~~~~v~~T~~~~--~a~el~~~~~~~~~d~IVvvGGDGTl~ev 182 (302)
+.+.+.+|+.......-....|. +.+...++ |..+.++.+.... ...++.+.+...++|+||+++-+.. .+.
T Consensus 67 ~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-~~~ 143 (366)
T 3h5t_A 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--DTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAKG-DPH 143 (366)
T ss_dssp -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--SCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESCCTT-CHH
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHh--hCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecCCCC-hHH
Confidence 45667888764322111112232 23333343 6777776665333 2455667777778999999876433 244
Q ss_pred HHHHhcCccccccCCccEEEec
Q 022147 183 VNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP 204 (302)
+..+... .+|+..+-
T Consensus 144 ~~~l~~~-------~iPvV~i~ 158 (366)
T 3h5t_A 144 IDAIRAR-------GLPAVIAD 158 (366)
T ss_dssp HHHHHHH-------TCCEEEES
T ss_pred HHHHHHC-------CCCEEEEC
Confidence 5555443 56766663
No 257
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=42.83 E-value=64 Score=25.07 Aligned_cols=72 Identities=22% Similarity=0.129 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCcEEE--EEeCCcchHHHHHHHhhcCCCceEEEEc-CCchH-----HHHHHHHhcCccccccCCccEEEe
Q 022147 132 DVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGIL-----VEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v--~~T~~~~~a~el~~~~~~~~~d~IVvvG-GDGTl-----~evvngL~~~~~~~~~~~~plgiI 203 (302)
.+...+...|++++. .... ..-+..+.+.+...++|.||+.. |-+.+ ..+.+.++.+ .++|+-++
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~-g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~------~~~PVlvv 154 (170)
T 2dum_A 82 EKAEEVKRAFRAKNVRTIIRF-GIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRK------TKKPVLII 154 (170)
T ss_dssp HHHHHHHHHTTCSEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHH------CSSCEEEE
T ss_pred HHHHHHHHcCCceeeeeEEec-CChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHh------CCCCEEEE
Confidence 344455566777664 3322 23345566666656788766553 23333 2355666554 27899999
Q ss_pred cCCChhh
Q 022147 204 PAGTGNG 210 (302)
Q Consensus 204 P~GTgN~ 210 (302)
|....+.
T Consensus 155 ~~~~~~~ 161 (170)
T 2dum_A 155 KEVDENE 161 (170)
T ss_dssp CCCCCC-
T ss_pred ccCCccc
Confidence 9765554
No 258
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=42.42 E-value=40 Score=27.71 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=42.1
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC-------CcchHHHHHHHhhcCCCceEEEEcCCchHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~-------~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ev 182 (302)
+|+ +|-+-++|- -+.+.++..|+..|+++.-+-|. ++.-+..+++.+.
T Consensus 4 MkI-aigsDhaG~-----~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~------------------- 58 (162)
T 2vvp_A 4 MRV-YLGADHAGY-----ELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTV------------------- 58 (162)
T ss_dssp CEE-EEEECHHHH-----HHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHH-------------------
T ss_pred CEE-EEEeCchhH-----HHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHH-------------------
Confidence 443 455655542 23467889999999877655332 2222223333322
Q ss_pred HHHHhcCccccccCCccEEEecCCChhhHHHhhhh
Q 022147 183 VNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLD 217 (302)
Q Consensus 183 vngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~ 217 (302)
.. ....||+=||||++++-+.+-
T Consensus 59 -----~g-------~~d~GIliCGTGiG~siaANK 81 (162)
T 2vvp_A 59 -----AD-------PGSLGIVLGGSGNGEQIAANK 81 (162)
T ss_dssp -----HS-------TTCEEEEEESSSHHHHHHHHT
T ss_pred -----cC-------CCceEEEEeCCcHHHHHHHhc
Confidence 22 346788888999988887753
No 259
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=42.25 E-value=1.6e+02 Score=26.10 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=52.0
Q ss_pred HHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhc--CCcEEEEEe--CCcchHHHHHHHhhcCCCceEEEEc
Q 022147 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 99 l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~a--g~~~~v~~T--~~~~~a~el~~~~~~~~~d~IVvvG 174 (302)
+-+++... ..+++.+|... . ..+.... +.++..|++. |+++..... ....+....++++...++|.|++.+
T Consensus 133 ~~~~l~~~-g~~~vaii~~~-~--~~g~~~~-~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~ 207 (387)
T 3i45_A 133 LAAEAAKL-PITRWATIAPN-Y--EYGQSAV-ARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVL 207 (387)
T ss_dssp HHHHHTTS-SCCEEEEECCS-S--HHHHHHH-HHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECC
T ss_pred HHHHHHHc-CCCeEEEEeCC-c--hHhHHHH-HHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcC
Confidence 33444333 45788888732 2 2223223 5677888888 665432222 2234556666777667899999888
Q ss_pred CCchHHHHHHHHhcC
Q 022147 175 GDGILVEVVNGLLER 189 (302)
Q Consensus 175 GDGTl~evvngL~~~ 189 (302)
-+.....++..+.+.
T Consensus 208 ~~~~~~~~~~~~~~~ 222 (387)
T 3i45_A 208 FGADLPKFVREGRVR 222 (387)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHc
Confidence 777777777777554
No 260
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=42.04 E-value=47 Score=29.79 Aligned_cols=63 Identities=13% Similarity=0.279 Sum_probs=38.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC-cEEEEEeCCcchH--HHHHHHhhcCCCceEEEEcCCch
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~-~~~v~~T~~~~~a--~el~~~~~~~~~d~IVvvGGDGT 178 (302)
.+++|| |.|... ... +.+.....|+..|+ .+++....+..++ .++.+.+. ..|+|++.|||=+
T Consensus 57 ~~I~~I--ptAs~~-~~~-~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~ 122 (291)
T 3en0_A 57 AIIGII--PSASRE-PLL-IGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQL 122 (291)
T ss_dssp CEEEEE--CTTCSS-HHH-HHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHH
T ss_pred CeEEEE--eCCCCC-hHH-HHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHH
Confidence 455555 444432 222 33567788999998 6766666444333 23444443 5799999999964
No 261
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=42.03 E-value=47 Score=27.69 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=44.4
Q ss_pred CCcEEEEEEc--CC-CCCCchhhhHHHHHHHHHHhcCCcEEE--EEeCCcchHHHHHHHhhcCCCceEEEEcCCch----
Q 022147 108 RPKRLYIFVN--PF-GGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI---- 178 (302)
Q Consensus 108 r~~r~~vivN--P~-sG~~~a~~~~~~~v~~~L~~ag~~~~v--~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGT---- 178 (302)
++.|+.||.- .. .|+ . ..-...+..+|++.|+++.. +..+..+...+..+++...++|.||+.||=|-
T Consensus 29 ~~~rvaIistGdEl~~G~-~--Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~D 105 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGD-E--DHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRD 105 (185)
T ss_dssp CCEEEEEEEECHHHHTTC-C--CSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTTC
T ss_pred CCCEEEEEEECcccCCCC-c--CcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCcc
Confidence 4556666652 11 244 2 12235788899999987543 33344444444444443357999999999663
Q ss_pred -HHHHHHHHh
Q 022147 179 -LVEVVNGLL 187 (302)
Q Consensus 179 -l~evvngL~ 187 (302)
..|++..+.
T Consensus 106 ~t~eal~~l~ 115 (185)
T 3rfq_A 106 VTPESTREIL 115 (185)
T ss_dssp CHHHHHHTTC
T ss_pred cHHHHHHHHh
Confidence 445555443
No 262
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=41.93 E-value=17 Score=27.39 Aligned_cols=25 Identities=12% Similarity=0.430 Sum_probs=22.2
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...++++.+.|+++|+..+.
T Consensus 100 r~~~l~a~s~~e~~~Wi~al~~~~~ 124 (129)
T 1x1g_A 100 THYYIQASSKAERAEWIEAIKKLTS 124 (129)
T ss_dssp CCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 5688999999999999999998874
No 263
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=41.83 E-value=42 Score=27.09 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCcEEE--EEeCCcchHHHHHHHhhcC-CCceEEEEcCCch-----HHHHHHHH
Q 022147 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLS-KYDGIVCVSGDGI-----LVEVVNGL 186 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v--~~T~~~~~a~el~~~~~~~-~~d~IVvvGGDGT-----l~evvngL 186 (302)
..+...|++.|+++.. +..+..+...+..+++... ++|.||+.||=|- ..|++..+
T Consensus 24 ~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~~ 87 (164)
T 2is8_A 24 LAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDRTPEATREL 87 (164)
T ss_dssp HHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHTT
T ss_pred HHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCChHHHHHHH
Confidence 4678889999986543 3334444444444444332 6999999999552 45555544
No 264
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=41.79 E-value=18 Score=26.72 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=22.2
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...++++.+.|+++|+..+.
T Consensus 75 r~~~l~a~s~~e~~~Wi~~l~~~~~ 99 (115)
T 2cod_A 75 RTFVFRVEKEEERNDWISILLNALK 99 (115)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999874
No 265
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=41.79 E-value=19 Score=36.71 Aligned_cols=85 Identities=8% Similarity=0.078 Sum_probs=52.2
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc----hHHHH-----HHHhhcCCCceEEEEcCCch--
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL----HAKEI-----VKVLDLSKYDGIVCVSGDGI-- 178 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~----~a~el-----~~~~~~~~~d~IVvvGGDGT-- 178 (302)
+|++||+-+ |- ..... ..+...|+.+|+.++++-.+... +...+ ..+.....||+||+.|| |+
T Consensus 601 rKVaILlaD--Gf-Ee~El--~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~ 674 (753)
T 3ttv_A 601 RVVAILLND--EV-RSADL--LAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIAD 674 (753)
T ss_dssp CEEEEECCT--TC-CHHHH--HHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGG
T ss_pred CEEEEEecC--CC-CHHHH--HHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHH
Confidence 689998876 32 32322 36678899999998877654311 10000 11222235999999999 64
Q ss_pred ------HHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 179 ------LVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 179 ------l~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
+.+.+...... ..+||.|-.|.
T Consensus 675 Lr~d~~vl~~Vre~~~~-------gKpIAAIC~Gp 702 (753)
T 3ttv_A 675 IADNGDANYYLMEAYKH-------LKPIALAGDAR 702 (753)
T ss_dssp TTTCHHHHHHHHHHHHT-------TCCEEEEGGGG
T ss_pred hhhCHHHHHHHHHHHhc-------CCeEEEECchH
Confidence 33444444444 67999998876
No 266
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=41.72 E-value=20 Score=27.43 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=22.1
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
++|.|...|+++...|+++|++.+.
T Consensus 99 ~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 99 SEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHh
Confidence 5788999999999999999998763
No 267
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=41.67 E-value=27 Score=26.43 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=22.8
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhhh
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
.+.+.|...++++.+.|+++|+..+.
T Consensus 103 ~r~~~l~A~s~~e~~~Wi~al~~~i~ 128 (134)
T 2y7b_A 103 VTKNWLSADTKEERDLWMQKLNQVLV 128 (134)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999998764
No 268
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=41.67 E-value=53 Score=26.60 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCcEEEEEe--CCcchHHHHHHH-hhcCCCceEEEEcCCc
Q 022147 131 DDVKPLLEDANIQFTVQET--TQQLHAKEIVKV-LDLSKYDGIVCVSGDG 177 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T--~~~~~a~el~~~-~~~~~~d~IVvvGGDG 177 (302)
..+...|.+.|+++..+.+ +..+...+..++ .+..++|.|++.||=|
T Consensus 43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g 92 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 4678899999988654333 333333333333 3446799999999976
No 269
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=41.56 E-value=57 Score=26.38 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=42.6
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC------CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~------~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.+|-+-++|-. +.+.++..|++.|+++.-+-|. ++.-+..+++.+
T Consensus 4 IaigsDhaG~~-----lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V------------------------ 54 (149)
T 2vvr_A 4 IAFGCDHVGFI-----LKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAV------------------------ 54 (149)
T ss_dssp EEEEECTTGGG-----GHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHH------------------------
T ss_pred EEEEeCchhHH-----HHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHH------------------------
Confidence 35667777642 2357889999999877655332 222233333333
Q ss_pred hcCccccccCCccEEEecCCChhhHHHhhhh
Q 022147 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLD 217 (302)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~ 217 (302)
... ....||+=||||++++-+.+-
T Consensus 55 ~~g-------~~d~GIliCGTGiG~siaANK 78 (149)
T 2vvr_A 55 AGG-------EVDGGILICGTGVGISIAANK 78 (149)
T ss_dssp HTT-------SSSEEEEEESSSHHHHHHHHT
T ss_pred HcC-------CCceEEEEeCCcHHHHHHHhc
Confidence 222 346788889999988887753
No 270
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=41.33 E-value=20 Score=26.97 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.3
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+++.|...++++.+.|+++|+..+.
T Consensus 95 ~~~lfqA~s~~e~~~Wi~ai~~~i~ 119 (122)
T 1dro_A 95 ALFLLQAHDDTEMSQWVTSLKAQSD 119 (122)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998774
No 271
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=41.31 E-value=91 Score=27.54 Aligned_cols=73 Identities=11% Similarity=0.050 Sum_probs=40.1
Q ss_pred CCCcEEEEEEcCCCCC-CchhhhHHHHHHHHHHhcCCcEEEEEeCCcch------------------------------H
Q 022147 107 GRPKRLYIFVNPFGGK-KIASKIFLDDVKPLLEDANIQFTVQETTQQLH------------------------------A 155 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~-~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~------------------------------a 155 (302)
..++|++++.+-.... +.+. .+...+...|.+.|+++.++....... .
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQ-SHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPYNGSVARLRFGPATH 96 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHH-HHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------CCHHHH
T ss_pred CCcceEEEEeccCCCCCCcHH-HHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccccCCcccccccHHHH
Confidence 4677888777422111 2222 233467778888888888776543321 0
Q ss_pred HHHHHHhhcCCCceEEEEcCCchHH
Q 022147 156 KEIVKVLDLSKYDGIVCVSGDGILV 180 (302)
Q Consensus 156 ~el~~~~~~~~~d~IVvvGGDGTl~ 180 (302)
..+.+.+...++|.|++-+......
T Consensus 97 ~~l~~~l~~~~~Dii~~~~~~~~~~ 121 (406)
T 2gek_A 97 RKVKKWIAEGDFDVLHIHEPNAPSL 121 (406)
T ss_dssp HHHHHHHHHHCCSEEEEECCCSSSH
T ss_pred HHHHHHHHhcCCCEEEECCccchHH
Confidence 2233333344799888887766543
No 272
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=41.24 E-value=27 Score=29.17 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=52.3
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHH-----HH-----HHHhhcCCCceEEEEcCC
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK-----EI-----VKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~-----el-----~~~~~~~~~d~IVvvGGD 176 (302)
..++|+.|++-| |- ....+ ......|+.+|+++++.-.+..+... .+ ..++....||.|++.||.
T Consensus 7 ~m~~~v~ill~~--g~-~~~e~--~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~ 81 (208)
T 3ot1_A 7 GMSKRILVPVAH--GS-EEMET--VIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGV 81 (208)
T ss_dssp --CCEEEEEECT--TC-CHHHH--HHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCH
T ss_pred ccCCeEEEEECC--CC-cHHHH--HHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCc
Confidence 356789999887 22 22222 24567888999888877654211100 00 112222469999999997
Q ss_pred chHH---------HHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 177 GILV---------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 177 GTl~---------evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+... +.+.....+ ..+|+-|-.|++=.+|.
T Consensus 82 ~~~~~l~~~~~l~~~l~~~~~~-------gk~i~aiC~G~a~~La~ 120 (208)
T 3ot1_A 82 GGAQAFADSTALLALIDAFSQQ-------GKLVAAICATPALVFAK 120 (208)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHT-------TCEEEEETTHHHHTTTT
T ss_pred hHHHHHhhCHHHHHHHHHHHHc-------CCEEEEEChhHHHHHHH
Confidence 5322 222233322 67888887776434444
No 273
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=41.10 E-value=1.1e+02 Score=25.43 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=33.1
Q ss_pred HHHHHHHHH--hcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE
Q 022147 130 LDDVKPLLE--DANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (302)
Q Consensus 130 ~~~v~~~L~--~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv 173 (302)
++.++.... ..|++++.+.|.+.++..+...+....++|+||+-
T Consensus 40 ~~~l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIIN 85 (176)
T 2c4w_A 40 HEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIIN 85 (176)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHhccccCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEEC
Confidence 456666666 77889999999999988888777754447877743
No 274
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=41.10 E-value=19 Score=25.98 Aligned_cols=22 Identities=9% Similarity=0.584 Sum_probs=19.7
Q ss_pred eeEEecCCChHHHHHHHHHHHh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRD 101 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~ 101 (302)
+.+.|...++++...|+++|+.
T Consensus 84 ~~~~~~A~s~~e~~~Wi~ai~~ 105 (106)
T 1btn_A 84 NEYLFQAKDDEEMNTWIQAISS 105 (106)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhc
Confidence 5788999999999999999875
No 275
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=40.86 E-value=26 Score=26.22 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=22.7
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhhh
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
.+.+.|...++++...|+++|+..+.
T Consensus 85 ~~~~~~~a~s~~e~~~Wi~al~~~~~ 110 (125)
T 1unq_A 85 VIERTFHVETPEEREEWTTAIQTVAD 110 (125)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeCCHHHHHHHHHHHHHHHh
Confidence 46788999999999999999998764
No 276
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=40.78 E-value=19 Score=27.21 Aligned_cols=26 Identities=4% Similarity=0.263 Sum_probs=22.8
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~ 105 (302)
+.+.|...++++.+.|+++|+..+..
T Consensus 96 ~~~~l~a~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 96 VHYFLQAATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHc
Confidence 56889999999999999999998754
No 277
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=40.54 E-value=74 Score=24.97 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=42.3
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNG 185 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~evvng 185 (302)
+++++|++-.. .|..+++. +.+...| |. ++++.-... +. .. ...+|.|+++. |+|.+-.-+..
T Consensus 1 M~k~~I~Y~S~--tGnT~~~A-~~ia~~l---g~-~~~~~~~~~-~~----~~--l~~~d~ii~g~pt~~~g~~p~~~~~ 66 (164)
T 2bmv_A 1 MGKIGIFFGTD--SGNAEAIA-EKISKAI---GN-AEVVDVAKA-SK----EQ--FNSFTKVILVAPTAGAGDLQTDWED 66 (164)
T ss_dssp -CCEEEEECCS--SSHHHHHH-HHHHHHH---CS-EEEEEGGGC-CH----HH--HTTCSEEEEEEEEETTTEECHHHHH
T ss_pred CCeEEEEEECC--CchHHHHH-HHHHHHc---CC-cEEEecccC-CH----hH--HhhCCEEEEEECCcCCCcCcHHHHH
Confidence 35788888544 45565544 5666666 44 555543321 11 12 34688777654 67766554444
Q ss_pred HhcCccccccCCccEEEecCC
Q 022147 186 LLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~G 206 (302)
++..-........+++++-+|
T Consensus 67 f~~~l~~~~l~~k~~avf~~G 87 (164)
T 2bmv_A 67 FLGTLEASDFANKTIGLVGLG 87 (164)
T ss_dssp HHTTCCTHHHHTSEEEEEEEC
T ss_pred HHHHHhhhhcCCCEEEEEEeC
Confidence 443311001124566655444
No 278
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.36 E-value=21 Score=26.48 Aligned_cols=24 Identities=13% Similarity=0.469 Sum_probs=21.4
Q ss_pred eeEEecCCChHHHHHHHHHHHhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l 103 (302)
+.+.|.+.++++.+.|+++|+..+
T Consensus 96 r~~~l~a~s~~e~~~Wi~al~~a~ 119 (122)
T 2yry_A 96 RTYFFSAESPEEQEAWIQAMGEAA 119 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHH
Confidence 678899999999999999998875
No 279
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=40.32 E-value=76 Score=25.01 Aligned_cols=48 Identities=4% Similarity=0.042 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC
Q 022147 128 IFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 128 ~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG 175 (302)
-|.+.|...|..+|+.+++......+..-.-+++....++-.++++|=
T Consensus 22 ~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~ 69 (130)
T 1v95_A 22 DYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ 69 (130)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEec
Confidence 466889999999999999876522234444455555567888888873
No 280
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=40.32 E-value=35 Score=29.17 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=27.2
Q ss_pred HHHHHHHhhcCCCceEEEEcCC-chHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 155 AKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 155 a~el~~~~~~~~~d~IVvvGGD-GTl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
|+++.+.+...++ .||.-||. |..-.+..+.++.. ...+|+||..
T Consensus 34 A~~lg~~LA~~G~-~vVsGGg~~GiM~aa~~gAl~~G------G~tiGVlP~~ 79 (215)
T 2a33_A 34 AVDLGNELVSRNI-DLVYGGGSIGLMGLVSQAVHDGG------RHVIGIIPKT 79 (215)
T ss_dssp HHHHHHHHHHTTC-EEEECCCSSHHHHHHHHHHHHTT------CCEEEEEESS
T ss_pred HHHHHHHHHHCCC-EEEECCChhhHhHHHHHHHHHcC------CcEEEEcchH
Confidence 3455555554333 34555665 77777777776653 5678888864
No 281
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.27 E-value=19 Score=26.97 Aligned_cols=26 Identities=8% Similarity=0.149 Sum_probs=22.3
Q ss_pred EeeEEecCCChHHHHHHHHHHHhhhh
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
.+.+.|...++++.+.|+++|+..+.
T Consensus 79 ~r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (119)
T 2dhk_A 79 SRVITLKAATKQAMLYWLQQLQMKRW 104 (119)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 36788999999999999999988753
No 282
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=40.24 E-value=1.2e+02 Score=27.31 Aligned_cols=76 Identities=8% Similarity=0.089 Sum_probs=48.0
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC---cchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~---~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.-+++.+|++-.-|.+ .. +.+...+++.|+.+...+... ..+...+..++...+.|.||+.+-......++.
T Consensus 129 gw~~vaii~d~~~g~~----~~-~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~ 203 (389)
T 3o21_A 129 KWEKFVYLYDTERGFS----VL-QAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILE 203 (389)
T ss_dssp TCCEEEEEECSTTCSH----HH-HHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEEcCcHHHH----HH-HHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 3478999995433322 22 456677888888776554432 124556667777677888888776666666666
Q ss_pred HHhc
Q 022147 185 GLLE 188 (302)
Q Consensus 185 gL~~ 188 (302)
.+.+
T Consensus 204 qa~~ 207 (389)
T 3o21_A 204 QVVI 207 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 283
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=39.99 E-value=21 Score=27.43 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.7
Q ss_pred eeEEecCCChHHHHHHHHHHHhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l 103 (302)
+.+.|...+.++.+.|+++|+...
T Consensus 94 ~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 94 HNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHC
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 284
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=39.61 E-value=1.5e+02 Score=26.08 Aligned_cols=78 Identities=8% Similarity=0.048 Sum_probs=46.6
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+|+.+|..... .+... .+.++..|++.|+++.... .....+....+.++...++|.|++.+-......++..
T Consensus 139 g~~~vaii~~~~~---~g~~~-~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~ 214 (375)
T 3i09_A 139 GGKTWFFLTADYA---FGKAL-EKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKA 214 (375)
T ss_dssp TCCEEEEEEESSH---HHHHH-HHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHH
T ss_pred CCceEEEEecccH---HHHHH-HHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHH
Confidence 4578888854221 22222 3577888999998763222 2223344455666666688988776554466667777
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 215 ~~~~ 218 (375)
T 3i09_A 215 AKEF 218 (375)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 6554
No 285
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=39.58 E-value=80 Score=26.65 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=35.5
Q ss_pred cEEEEEE-cCCCCCCchhhhHHHHHHHHHHhc-CCcEEEEEeCC---------------------c--chHHHHHHHhhc
Q 022147 110 KRLYIFV-NPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQ---------------------Q--LHAKEIVKVLDL 164 (302)
Q Consensus 110 ~r~~viv-NP~sG~~~a~~~~~~~v~~~L~~a-g~~~~v~~T~~---------------------~--~~a~el~~~~~~ 164 (302)
+++++|+ .|.. .+...++. +.+...++++ |.+++++.... . .+..++.+++.
T Consensus 2 mkIliI~gS~r~-~s~T~~la-~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~- 78 (242)
T 1sqs_A 2 NKIFIYAGVRNH-NSKTLEYT-KRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELL- 78 (242)
T ss_dssp CEEEEEECCCCT-TCHHHHHH-HHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHH-
T ss_pred CeEEEEECCCCC-CChHHHHH-HHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHH-
Confidence 5666665 4442 24444444 5677777777 88877654321 1 34455555554
Q ss_pred CCCceEEEEc
Q 022147 165 SKYDGIVCVS 174 (302)
Q Consensus 165 ~~~d~IVvvG 174 (302)
.+|+||++.
T Consensus 79 -~AD~iI~~s 87 (242)
T 1sqs_A 79 -ESDIIIISS 87 (242)
T ss_dssp -HCSEEEEEE
T ss_pred -HCCEEEEEc
Confidence 578888765
No 286
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=39.56 E-value=1.5e+02 Score=24.41 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=40.7
Q ss_pred CcEEEEEEcCCC---CCCc-------hhhhHHHHHHHHH--HhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE
Q 022147 109 PKRLYIFVNPFG---GKKI-------ASKIFLDDVKPLL--EDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (302)
Q Consensus 109 ~~r~~vivNP~s---G~~~-------a~~~~~~~v~~~L--~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv 173 (302)
+++++||-=|.- |++. ...-.++.++... ...|++++.+.+.+.++..+...+....++|+||+-
T Consensus 14 ~~~IlVlNGPNLNlLG~REP~iYG~~TL~di~~~l~~~a~~~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIIN 90 (167)
T 3kip_A 14 VKKVLLINGPNLNLLGTREPEKYGTTSLSDIEQAAIEQAKLKNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVIN 90 (167)
T ss_dssp CCEEEEEECTTGGGTTCC----CCSCCHHHHHHHHHHHHHHTCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCeEEEEcCCCccccCCCCCCcCCcCCHHHHHHHHHHHhccccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEc
Confidence 457777766652 2211 1112234555555 557889999999999988887777642467777743
No 287
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=39.32 E-value=54 Score=26.54 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCcEEE--EEeCCcchHHHHHHHhhcCCCceEEEEcCCch-----HHHHHHHHhc
Q 022147 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLLE 188 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v--~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGT-----l~evvngL~~ 188 (302)
..+..+|++.|+++.. +..+. +...+..+++...++|.||+.||=|. ..|++..+.+
T Consensus 30 ~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~~D~t~eal~~~~~ 93 (164)
T 3pzy_A 30 PIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAPTDSTPDQTVAVVD 93 (164)
T ss_dssp HHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTTCS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCCCccHHHHHHHHhc
Confidence 4678889999986532 23333 44444444443347999999998653 5566665533
No 288
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=38.53 E-value=50 Score=24.68 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=25.9
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEec
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP 204 (302)
-+..+.+.+...++| +|++|.-|. .+.+.++.+ .++|+-++|
T Consensus 97 ~~~~I~~~a~~~~~d-liV~G~~g~--sv~~~vl~~------a~~PVlvv~ 138 (138)
T 1q77_A 97 LSEEVKKFVEGKGYE-LVVWACYPS--AYLCKVIDG------LNLASLIVK 138 (138)
T ss_dssp HHHHHHHHHTTSCCS-EEEECSCCG--GGTHHHHHH------SSSEEEECC
T ss_pred HHHHHHHHHHhcCCC-EEEEeCCCC--chHHHHHHh------CCCceEeeC
Confidence 345566666555677 455677775 555555554 267888776
No 289
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=38.33 E-value=59 Score=29.27 Aligned_cols=112 Identities=9% Similarity=0.006 Sum_probs=64.2
Q ss_pred hhccCCCcEEEEEEcCCCC-------CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcC---CCce-EE
Q 022147 103 IDSFGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS---KYDG-IV 171 (302)
Q Consensus 103 l~~~~r~~r~~vivNP~sG-------~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~---~~d~-IV 171 (302)
++-...++++.+|||-..= ...+...=.+.+...|+..|++++++.--...+..+..+++... .+|. ++
T Consensus 62 Y~m~~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~vv 141 (305)
T 1f1j_A 62 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFAC 141 (305)
T ss_dssp CCCCSSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHHSCGGGEEEEEE
T ss_pred cccCCCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 4434567788888875411 11121122368889999999998888777766766666665432 3554 33
Q ss_pred EE----------cCCch--HHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 172 CV----------SGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 172 vv----------GGDGT--l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
++ |=||. +.++.+-+....-..-..++-|-+|-+=-||.+...
T Consensus 142 ~ilsHG~~~~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g 196 (305)
T 1f1j_A 142 ILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKPKLFFIQACRGTELDDG 196 (305)
T ss_dssp EEESCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCC
T ss_pred EEecCCCCCeEEecCCeEEHHHHHHHhhhccChhhcCCceEEEeccccCCcccCC
Confidence 33 33552 445554432221111123566888988888877543
No 290
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=38.19 E-value=43 Score=27.07 Aligned_cols=47 Identities=15% Similarity=0.074 Sum_probs=27.5
Q ss_pred HHHHHH----HHhcCCcEEE--EEeCCcchHHHHHHHhhcCCCceEEEEcCCc
Q 022147 131 DDVKPL----LEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 131 ~~v~~~----L~~ag~~~~v--~~T~~~~~a~el~~~~~~~~~d~IVvvGGDG 177 (302)
..+... |++.|+++.. +..+..+...+..+++...++|.||+.||=|
T Consensus 28 ~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g 80 (167)
T 2g2c_A 28 PLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTG 80 (167)
T ss_dssp HHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred HHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 356777 8888876532 3334444444545554433599999999976
No 291
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=38.15 E-value=2.2e+02 Score=25.46 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=57.7
Q ss_pred CCChHHHHHHHHHHHhhhhc---cCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC--CcchHHHHHH
Q 022147 86 PLSEDSKRLWCEKLRDFIDS---FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVK 160 (302)
Q Consensus 86 ~~~~~~~~~w~~~l~~~l~~---~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~--~~~~a~el~~ 160 (302)
..+...+....+.+...... ....+++.+|+.. ..-+.. +.+.++..+++.|+++...+.- ...+...++.
T Consensus 138 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~---~~~g~~-~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~ 213 (419)
T 3h5l_A 138 PPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGP---GIYSVN-IANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLA 213 (419)
T ss_dssp CCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECS---SHHHHH-HHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcC---cchhHH-HHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHH
Confidence 34444444444444443221 1145788888743 122333 3367888899999876544332 2234556667
Q ss_pred HhhcCCCceEEEEcCCc-hHHHHHHHHhcC
Q 022147 161 VLDLSKYDGIVCVSGDG-ILVEVVNGLLER 189 (302)
Q Consensus 161 ~~~~~~~d~IVvvGGDG-Tl~evvngL~~~ 189 (302)
++...++|.|++++-.+ ....++..+.+.
T Consensus 214 ~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 214 KLRADPPAVIVVTHFYPQDQALFMNQFMTD 243 (419)
T ss_dssp HHHHSCCSEEEECCCCHHHHHHHHHHHTTS
T ss_pred HHHhcCCCEEEEccccCchHHHHHHHHHHc
Confidence 77667899888876544 466677777554
No 292
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=37.76 E-value=1.2e+02 Score=27.21 Aligned_cols=122 Identities=13% Similarity=0.119 Sum_probs=69.0
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCC-CCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHH
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFG-GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEI 158 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~s-G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el 158 (302)
.-..|...|-..--++-.+..+ |. -. .+.+||.. .-+++..+ +.....|...|++.-++.+...+...++
T Consensus 39 la~lF~e~STRTR~SFE~A~~~-LG-----g~-~i~l~~~~ss~~kgEsl--~DTarvLs~~~~D~iviR~~~~~~~~~l 109 (304)
T 3r7f_A 39 AANLFFEPSTRTRFSFEVAEKK-LG-----MN-VLNLDGTSTSVQKGETL--YDTIRTLESIGVDVCVIRHSEDEYYEEL 109 (304)
T ss_dssp EEEEESSCCSHHHHHHHHHHHH-TT-----CE-EEEEETTSTTSCSSSCH--HHHHHHHHHHTCCEEEEECSSTTCHHHH
T ss_pred EEEEecCCChhHHHhHHHHHHH-CC-----Ce-EEEECcccccCCCCCCH--HHHHHHHHHhcCCEEEEecCChhHHHHH
Confidence 4445666665555556555433 21 12 33448743 33455543 3556688888788888888877777777
Q ss_pred HHHhhcCCCceEEEEcCCchHHHHHHHHhc----CccccccCCccEEEecCCChhhHHHhh
Q 022147 159 VKVLDLSKYDGIVCVSGDGILVEVVNGLLE----REDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 159 ~~~~~~~~~d~IVvvGGDGTl~evvngL~~----~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
++.. +.-|+-||||....=.+.|+. ++.......+.++++--|.-|..|+|+
T Consensus 110 a~~~-----~vPVINagdg~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD~~~~rva~Sl 165 (304)
T 3r7f_A 110 VSQV-----NIPILNAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHGDIKHSRVARSN 165 (304)
T ss_dssp HHHC-----SSCEEESCCTTSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCCTTCHHHHHH
T ss_pred HHhC-----CCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCCCCCEEEEEcCCCCcchHHHH
Confidence 7643 345888888841111111100 000011236789998877666777776
No 293
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=37.70 E-value=1.8e+02 Score=25.58 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=62.2
Q ss_pred ccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc----CCCceEEE--------
Q 022147 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL----SKYDGIVC-------- 172 (302)
Q Consensus 105 ~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~----~~~d~IVv-------- 172 (302)
-..+++.+.+|+|-.. ..+ +.++..|+..|++++++.--...+..+..+++.. ..+|.+||
T Consensus 38 m~~~~rG~~LIinn~~--~D~-----~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~~ 110 (272)
T 3h11_A 38 MKSKPLGICLIIDCIG--NET-----ELLRDTFTSLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGS 110 (272)
T ss_dssp CCCSSSEEEEEEESSC--CCC-----SHHHHHHHHHTEEEEEEESCBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEET
T ss_pred CCCCcceEEEEECCch--HHH-----HHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCCC
Confidence 3356788889998642 222 3577899999999888877666666666666542 34676543
Q ss_pred ---EcCCch-----HHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 173 ---VSGDGI-----LVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 173 ---vGGDGT-----l~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
.|=||. +.++.+-+....-..-.-++-|-+|-+=-
T Consensus 111 g~i~g~D~~~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACR 153 (272)
T 3h11_A 111 QSVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQNYV 153 (272)
T ss_dssp TEECBTSCCSSCEEHHHHHHHHSTTTCGGGTTSCEEEEEEEEE
T ss_pred CeEEEEcCCcceEeHHHHHHHhccccChhhcCCCcEEEEECCC
Confidence 566886 88888888654222112355677777633
No 294
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=37.61 E-value=79 Score=27.19 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=23.0
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~ 147 (302)
+|+ .|.|-++..-+ ..+..+.++..|+..|+++.-+
T Consensus 4 MkI-aIgsDha~~lK-n~ilk~~i~~~L~~~G~eV~D~ 39 (216)
T 2ppw_A 4 MKI-ALINENSQASK-NHIIYDSLKEATDKKGYQLFNY 39 (216)
T ss_dssp CEE-EECCCTTTGGG-HHHHHHHHHHHHHHHTCEEEEC
T ss_pred cEE-EEEcCChHhhh-hhhHHHHHHHHHHHCCCEEEEe
Confidence 554 56677772111 1234468999999999887655
No 295
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=37.61 E-value=42 Score=29.21 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=37.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl 179 (302)
.|+++||-|.....- ..+.+.|+..|++++++.....+. +-. +..++|.||+-||-++.
T Consensus 3 ~~~vliiqh~~~e~~-------~~i~~~l~~~G~~v~v~~~~~~~~---~p~--~~~~~d~lIl~GGp~~~ 61 (250)
T 3m3p_A 3 LKPVMIIQFSASEGP-------GHFGDFLAGEHIPFQVLRMDRSDP---LPA--EIRDCSGLAMMGGPMSA 61 (250)
T ss_dssp CCCEEEEESSSSCCC-------HHHHHHHHHTTCCEEEEEGGGTCC---CCS--CGGGSSEEEECCCSSCT
T ss_pred CCeEEEEECCCCCCH-------HHHHHHHHHCCCeEEEEeccCCCc---CcC--ccccCCEEEECCCCCcc
Confidence 467888887632211 245677889999988776432110 000 13469999999998764
No 296
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=37.50 E-value=1.4e+02 Score=24.26 Aligned_cols=63 Identities=6% Similarity=0.102 Sum_probs=41.2
Q ss_pred CcEEEEEEcCCC---CCCchh-------hhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 109 PKRLYIFVNPFG---GKKIAS-------KIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 109 ~~r~~vivNP~s---G~~~a~-------~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
+++++||-=|.- |++... .-.++.++......|++++.+.+.+.++..+...+.. .++|+||+
T Consensus 7 m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~-~~~dgiiI 79 (153)
T 3lwz_A 7 KFHILLLNGPNLNLLGTREPEKYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQAR-GNTDFILI 79 (153)
T ss_dssp CEEEEEEECTTGGGTTTSSHHHHCCCCHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHT-TTCSEEEE
T ss_pred cCeEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh-hcCceEEE
Confidence 457777766653 222211 1124556666667899999999999998888777753 45777764
No 297
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold, catalytic triad, merops S66 unassigned peptidases family; HET: MSE; 1.89A {Novosphingobium aromaticivorans}
Probab=37.40 E-value=55 Score=28.96 Aligned_cols=72 Identities=11% Similarity=0.145 Sum_probs=42.4
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhc--CCcEEEEEeC----------CcchHHHHHHHhhcCCCceEEE-EcCCc
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQETT----------QQLHAKEIVKVLDLSKYDGIVC-VSGDG 177 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~a--g~~~~v~~T~----------~~~~a~el~~~~~~~~~d~IVv-vGGDG 177 (302)
+-.-|+.|.|+-.. . .+ +.....++.. |+++.+..+- ....|.++.+.+.....++|+| .||+|
T Consensus 4 ~~I~ivaPSs~~~~-~-~~-~~~~~~l~~~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyg 80 (274)
T 3g23_A 4 RRIAICAPSTPFTR-E-DS-ARVIALAAAEFPDLSLSFHEQCFASEGHFAGSDALRLSAFLECANDDAFEAVWFVRGGYG 80 (274)
T ss_dssp EEEEEECSSSCCCH-H-HH-HHHHHHHHHHCTTEEEEECGGGGCCSSSSSSCHHHHHHHHHHHHTCTTCSEEEESCCSSC
T ss_pred CEEEEEeCCCCCCH-H-HH-HHHHHHHHhccCCeEEEECcchhhccCccCCCHHHHHHHHHHHhhCCCCCEEEEeecccc
Confidence 45678899887543 2 34 3456677764 7655443221 1123445555555567787766 68899
Q ss_pred hHHHHHHHH
Q 022147 178 ILVEVVNGL 186 (302)
Q Consensus 178 Tl~evvngL 186 (302)
+ ++++..|
T Consensus 81 a-~rlL~~l 88 (274)
T 3g23_A 81 A-NRIAEDA 88 (274)
T ss_dssp T-HHHHHHH
T ss_pred H-HHHHHhh
Confidence 7 4566666
No 298
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=37.37 E-value=19 Score=29.46 Aligned_cols=93 Identities=10% Similarity=-0.006 Sum_probs=49.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHh-cCCcEEEEEeCCcc----hHHHH-----HHHhhcCCCceEEEEcCCch
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQETTQQL----HAKEI-----VKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~-ag~~~~v~~T~~~~----~a~el-----~~~~~~~~~d~IVvvGGDGT 178 (302)
|+++.|++-|..-. .... .....|+. .++++++...+... +...+ ..+.....||.|++.||.|.
T Consensus 1 m~~i~ill~~g~~~---~e~~--~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~ 75 (188)
T 2fex_A 1 MTRIAIALAQDFAD---WEPA--LLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSW 75 (188)
T ss_dssp CCEEEEECCTTBCT---TSSH--HHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHH
T ss_pred CcEEEEEeCCCchH---HHHH--HHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcc
Confidence 36777777663222 1121 24456666 77777765543210 00000 11222237999999999764
Q ss_pred H-------HHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 179 L-------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 179 l-------~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
- .+.+..... ...+|+-|-.|+. .+|..
T Consensus 76 ~~~~~~~l~~~l~~~~~-------~~k~i~aiC~G~~-~La~a 110 (188)
T 2fex_A 76 EKGTAADLGGLVKRFRD-------RDRLVAGICAAAS-ALGGT 110 (188)
T ss_dssp HHTCCCCCHHHHHHHHH-------TTCEEEEETHHHH-HHHHT
T ss_pred cccccHHHHHHHHHHHH-------CCCEEEEECHHHH-HHHHC
Confidence 2 222333322 2578888888874 55554
No 299
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=36.92 E-value=40 Score=29.35 Aligned_cols=39 Identities=3% Similarity=-0.038 Sum_probs=23.7
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET 149 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T 149 (302)
.|++.++ |..|-.++-. ...+.++..|+..|+++.-+-|
T Consensus 19 ~mkiali-~~~sqa~kN~-~lKe~i~~~L~~~G~eV~D~G~ 57 (231)
T 3c5y_A 19 GMKIALI-IENSQAAKNA-VVHEALTTVAEPLGHKVFNYGM 57 (231)
T ss_dssp CCEEEEC-CCGGGGGGHH-HHHHHHHHHHGGGTCEEEECCC
T ss_pred cceEEEE-ecCCHhhhHH-HHHHHHHHHHHHCCCEEEEeCC
Confidence 4555544 4444333322 3447899999999988765533
No 300
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=36.84 E-value=26 Score=27.25 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=22.4
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...++++...|+++|+..+.
T Consensus 100 r~~~l~A~s~~e~~~Wi~al~~ai~ 124 (150)
T 1wg7_A 100 SSYLLAADSEVEMEEWITILNKILQ 124 (150)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6788999999999999999998764
No 301
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=36.82 E-value=2.3e+02 Score=25.37 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhhhc----cC-CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe---CCcchHHHHHHH
Q 022147 90 DSKRLWCEKLRDFIDS----FG-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKV 161 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~----~~-r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T---~~~~~a~el~~~ 161 (302)
+.+++..+.+++.+.. .+ +...+.+|.= |...+.+.|.+.-...+++.|+.++.+.- .+.++..+..++
T Consensus 13 ~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilv---g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~ 89 (300)
T 4a26_A 13 AIAAAIRSELKDKVAALRELYGGRVPGLASIIV---GQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEK 89 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEE---SCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEEe---CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455555555554322 13 3334444432 45566677878888899999998876653 344555566666
Q ss_pred hhcC-CCceEE
Q 022147 162 LDLS-KYDGIV 171 (302)
Q Consensus 162 ~~~~-~~d~IV 171 (302)
+..+ ..++|+
T Consensus 90 lN~d~~v~GIl 100 (300)
T 4a26_A 90 LNNDPNCHGII 100 (300)
T ss_dssp HHTCTTCCEEE
T ss_pred hcCCCCCCEEE
Confidence 6532 455554
No 302
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=36.76 E-value=32 Score=26.90 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.8
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhcc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~~ 106 (302)
..|.|...+.+++..|+++|..++...
T Consensus 88 ~~Y~fqA~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 88 NVYKFQTGSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence 569999999999999999999998643
No 303
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=36.52 E-value=1.2e+02 Score=24.70 Aligned_cols=40 Identities=8% Similarity=0.232 Sum_probs=23.6
Q ss_pred cEEEEEE-cCCC-CCCchhhhHHHHHHHHHHhcC--CcEEEEEeC
Q 022147 110 KRLYIFV-NPFG-GKKIASKIFLDDVKPLLEDAN--IQFTVQETT 150 (302)
Q Consensus 110 ~r~~viv-NP~s-G~~~a~~~~~~~v~~~L~~ag--~~~~v~~T~ 150 (302)
+|+++|+ .|.. .++...++. +.+...++++| .+++++.-.
T Consensus 2 ~kilii~gS~r~~~~s~t~~la-~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRAL-ETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHH-HHHHHHHHHHCTTSEEEEEETT
T ss_pred CeEEEEEecCCCCCCCHHHHHH-HHHHHHHHHhCCCCeEEEeeCC
Confidence 4666555 5652 234445444 57777788776 777766443
No 304
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=36.42 E-value=1e+02 Score=26.47 Aligned_cols=66 Identities=8% Similarity=0.017 Sum_probs=38.7
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC----cEEE--EEeCC-cchHHHHHHHhhcCCCceEEEEcC
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI----QFTV--QETTQ-QLHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~----~~~v--~~T~~-~~~a~el~~~~~~~~~d~IVvvGG 175 (302)
.+.+++.||. ..+.. -...+ .+-++..+++.|. .+.+ .-++. ++...++.+.+...++|+||+.|.
T Consensus 6 ~~t~~IGvi~-~~~~p-~~~~~-~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 78 (302)
T 2qh8_A 6 AKTAKVAVSQ-IVEHP-ALDAT-RQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp -CCEEEEEEE-SSCCH-HHHHH-HHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH
T ss_pred cCCcEEEEEE-eccCh-hHHHH-HHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh
Confidence 3567788763 22221 12223 3577788888888 5444 33432 233345667776678999998864
No 305
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=36.30 E-value=1.9e+02 Score=24.23 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=53.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC-CcchHHHHHHH--hhcC--CCceEEEEcCCchHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKV--LDLS--KYDGIVCVSGDGILVEV 182 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~-~~~~a~el~~~--~~~~--~~d~IVvvGGDGTl~ev 182 (302)
..+++.+|..|.. .......+ +-++..|+++|+++.+.... ..+.+.+.+++ +... .+|+|+ +..|.+...+
T Consensus 123 G~~~I~~i~~~~~-~~~~~~R~-~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~ 199 (285)
T 3c3k_A 123 GKKRIALINHDLA-YQYAQHRE-SGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLLKSAVKPDAIF-AISDVLAAGA 199 (285)
T ss_dssp TCCCEEEEECCTT-SHHHHHHH-HHHHHHHHHHTCCCCEEEECSSSSHHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHH
T ss_pred CCCeEEEEeCCCc-cccHHHHH-HHHHHHHHHcCCCceEeecCCChHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHH
Confidence 3577888876642 22222223 45667788888765533333 34556666766 5432 467665 5678888888
Q ss_pred HHHHhcCccccccCCcc--EEEecCC
Q 022147 183 VNGLLEREDWNDAIKVP--LGVVPAG 206 (302)
Q Consensus 183 vngL~~~~~~~~~~~~p--lgiIP~G 206 (302)
++.|.+.. .++| +.++-.+
T Consensus 200 ~~al~~~g-----~~vP~di~vvg~d 220 (285)
T 3c3k_A 200 IQALTESG-----LSIPQDVAVVGFD 220 (285)
T ss_dssp HHHHHHTT-----CCTTTTCEEECSB
T ss_pred HHHHHHcC-----CCCCCceEEEEeC
Confidence 88887653 2333 5666544
No 306
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=36.07 E-value=1.9e+02 Score=24.12 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET 149 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T 149 (302)
++..|+|+++|-|+..- .-.+...|...|.++-++..
T Consensus 3 ~~I~v~s~kgGvGKTt~--a~~LA~~la~~g~~VlliD~ 39 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTI--TANLGVALAQLGHDVTIVDA 39 (263)
T ss_dssp EEEEEEESSSCSCHHHH--HHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCCHHHH--HHHHHHHHHhCCCcEEEEEC
Confidence 45556666666655431 23455555555555444443
No 307
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=35.93 E-value=1e+02 Score=27.22 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=25.0
Q ss_pred CCcEEEEEE-cCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE
Q 022147 108 RPKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQE 148 (302)
Q Consensus 108 r~~r~~viv-NP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~ 148 (302)
++||++||+ +|..++-. ..+. +.+...|+++|.++++.-
T Consensus 21 ~~MKiLII~aHP~~~S~n-~aL~-~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLN-GALK-NFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp -CCEEEEEECCSCTTSHH-HHHH-HHHHHHHHHTTCEEEEEE
T ss_pred hCCeEEEEEeCCCCccHH-HHHH-HHHHHHHHHCCCeEEEEE
Confidence 466777766 77644322 2333 567778888998887764
No 308
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=35.84 E-value=22 Score=27.62 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.8
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|..+++++.+.|+++|+..+.
T Consensus 100 ~~~~f~A~s~~e~~~Wi~ai~~a~~ 124 (130)
T 1v88_A 100 SYLIIRATSESDGRCWMDALELALK 124 (130)
T ss_dssp SCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHh
Confidence 3478999999999999999998875
No 309
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=35.82 E-value=55 Score=24.44 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=31.4
Q ss_pred cCC-cEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC-Cch-----HHHHHHHHhcCccccccCCccEEEec
Q 022147 140 ANI-QFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG-DGI-----LVEVVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 140 ag~-~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG-DGT-----l~evvngL~~~~~~~~~~~~plgiIP 204 (302)
.|+ +++...... .-+..+.+.+...++|.||+..- -+. +..+.+.++.+ .++|+-++|
T Consensus 73 ~g~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~------~~~pVlvv~ 137 (137)
T 2z08_A 73 TGVPKEDALLLEG-VPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAE------APCPVLLVR 137 (137)
T ss_dssp HCCCGGGEEEEES-SHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHH------CSSCEEEEC
T ss_pred cCCCccEEEEEec-CHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhc------CCCCEEEeC
Confidence 666 544433221 23455666666667887665422 121 34455566554 267887776
No 310
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.44 E-value=71 Score=25.47 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.9
Q ss_pred EeeEEecCCChHHHHHHHHHHHhh
Q 022147 79 RKDFVFEPLSEDSKRLWCEKLRDF 102 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~ 102 (302)
.+++.|.+.+++++++|.++++.+
T Consensus 87 ~r~y~l~cdsEeqy~~WMaA~rlA 110 (137)
T 2ys3_A 87 MSEIYLRCQDEQQYARWMAGCRLA 110 (137)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHHHh
Confidence 478999999999999999988654
No 311
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=35.41 E-value=16 Score=29.73 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=42.6
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHH-----
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILV----- 180 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~----- 180 (302)
|++++|++=.. .|..+++. +.+...+... ++++++..... +. .++ ..||.||++. |+|.+.
T Consensus 1 M~kilIiY~S~--tGnT~~iA-~~ia~~l~~~-~~v~~~~~~~~-~~----~~l--~~~d~ii~g~pty~~G~~pg~~~~ 69 (182)
T 2wc1_A 1 MAKIGLFFGSD--TGTTRKIA-KQIKDMFDDE-VMAKPLNVNRA-DV----ADF--MAYDFLILGTPTLGDGQLPGLSAN 69 (182)
T ss_dssp CCSEEEEECCS--SSHHHHHH-HHHHTTSCTT-TBCCCEEGGGC-CH----HHH--HHCSEEEEEEECBTTTBCSSGGGT
T ss_pred CcEEEEEEECC--CchHHHHH-HHHHHHhccc-CceEEEEcccC-CH----HHH--hhCCeEEEEEeeCCCCCCCccccc
Confidence 35788888544 44555443 4666555443 33444332221 11 122 3578777764 566666
Q ss_pred ---HHHHHHhcCccccccCCccEEEecCCC
Q 022147 181 ---EVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 181 ---evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
..+..++.+-........+++++-+|.
T Consensus 70 ~~~~~~~~f~~~l~~~~l~gk~~avfg~g~ 99 (182)
T 2wc1_A 70 AASESWEEFLPRIADQDFSGKTIALFGLGD 99 (182)
T ss_dssp CSSCCHHHHGGGGTTCCCTTCEEEEEEECC
T ss_pred cchhHHHHHHHHhhhccCCCCEEEEEEeCC
Confidence 444444432111112245666665544
No 312
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=35.39 E-value=30 Score=26.21 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=22.1
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...|+++.++|.+.|+....
T Consensus 82 ~~y~f~A~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 82 QSWYLSASSAELQQQWLETLSTAAH 106 (112)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 4699999999999999999988754
No 313
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=35.20 E-value=62 Score=26.40 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=36.2
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
+++||=|..| |...+...|++.|+++.++.... ...++.+.+.....+.+|+.||-|+..+
T Consensus 2 ~i~iiDn~~s--------~~~~i~~~l~~~G~~~~v~~~~~--~~~~i~~~l~~~~~~~iil~gGpg~~~~ 62 (192)
T 1i1q_B 2 DILLLDNIDS--------FTWNLADQLRTNGHNVVIYRNHI--PAQTLIDRLATMKNPVLMLSPGPGVPSE 62 (192)
T ss_dssp EEEEEECSCS--------SHHHHHHHHHHTTCEEEEEETTS--CSHHHHHHHTTCSSEEEEECCCSSCGGG
T ss_pred cEEEEECCcc--------HHHHHHHHHHHCCCeEEEEECCC--CHHHHHHHhhhccCCeEEECCCCcCchh
Confidence 5677776533 12355677788898877765442 2234434433223456999999988543
No 314
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=35.12 E-value=2e+02 Score=24.00 Aligned_cols=91 Identities=9% Similarity=0.083 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC-CcchHHHHHHHhhcC---CCceEEEEcCCchHHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLS---KYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~-~~~~a~el~~~~~~~---~~d~IVvvGGDGTl~evvn 184 (302)
.+++.+|..|.. .......+ +-+...|++.|+++.+.... ....+.+.++++... ++|+| ++..|.+...+++
T Consensus 118 ~~~i~~i~~~~~-~~~~~~R~-~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai-~~~~d~~a~g~~~ 194 (277)
T 3cs3_A 118 SKKVLLLSGPEK-GYDSQERL-AVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDV-FAFNDEMAIGVYK 194 (277)
T ss_dssp CSCEEEEECCTT-SHHHHHHH-HHHHHHHHHTTCCEEEEECCSSHHHHHHHHHHHTTSCCCSSEEE-EESSHHHHHHHHH
T ss_pred CceEEEEeCCcc-CccHHHHH-HHHHHHHHHcCCCeeEEeCCCChhHHHHHHHHHHhcCCCCCcEE-EEcChHHHHHHHH
Confidence 577888876643 22222233 45667788889877644333 334455666665433 45555 4678888888999
Q ss_pred HHhcCccccccCCcc--EEEecCCC
Q 022147 185 GLLEREDWNDAIKVP--LGVVPAGT 207 (302)
Q Consensus 185 gL~~~~~~~~~~~~p--lgiIP~GT 207 (302)
.|.+.. .++| +.++-.+-
T Consensus 195 al~~~g-----~~vP~di~vvg~d~ 214 (277)
T 3cs3_A 195 YVAETN-----YQMGKDIRIIGFDN 214 (277)
T ss_dssp HHTTSS-----CCBTTTEEEECSSC
T ss_pred HHHHcC-----CCCCCcEEEEEeCC
Confidence 987653 2333 67776654
No 315
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=34.96 E-value=26 Score=26.16 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.7
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...++++.+.|+++|+....
T Consensus 95 r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 95 RTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 5688999999999999999988753
No 316
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=34.96 E-value=25 Score=27.32 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=22.4
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...++++.+.|+++|+..+.
T Consensus 95 r~~~l~a~s~~e~~~Wi~al~~~i~ 119 (148)
T 1u5f_A 95 RIYQFTAASPKDAEEWVQQLKFILQ 119 (148)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999875
No 317
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=34.91 E-value=97 Score=26.77 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=40.2
Q ss_pred HHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCc-------hHHHHHHHHhcCccccccCCccEEEecC
Q 022147 133 VKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-------ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 133 v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDG-------Tl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
+...+...|++++........-+..+.+.....++|.||+ |-.| .+..+...++.+ ..+|+.++|.
T Consensus 78 ~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~-G~~g~~~~~~~~~Gs~~~~vl~~------~~~PVlvv~~ 150 (319)
T 3olq_A 78 QARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIK-MAHQHDKLGSLIFTPLDWQLLRK------CPAPVWMVKD 150 (319)
T ss_dssp HHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEE-EEBCC--CCSCBCCHHHHHHHHH------CSSCEEEEES
T ss_pred HHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEE-ecCcCchhhcccccccHHHHHhc------CCCCEEEecC
Confidence 3344456788877655422233445666555456886654 4322 134455555554 2789999998
Q ss_pred CChh
Q 022147 206 GTGN 209 (302)
Q Consensus 206 GTgN 209 (302)
+...
T Consensus 151 ~~~~ 154 (319)
T 3olq_A 151 KEWP 154 (319)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7643
No 318
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=34.62 E-value=1.4e+02 Score=22.20 Aligned_cols=75 Identities=8% Similarity=0.073 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHh------hcCCCceEEEE----cCCchHHHHHHHHhcCccccccCCcc
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL------DLSKYDGIVCV----SGDGILVEVVNGLLEREDWNDAIKVP 199 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~------~~~~~d~IVvv----GGDGTl~evvngL~~~~~~~~~~~~p 199 (302)
...++.+|+..|..+.+....+..+|.+..++. ....+|.|++- +.|| .+++..|...+. ...+|
T Consensus 17 ~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g--~~~~~~lr~~~~---~~~~p 91 (152)
T 3heb_A 17 ARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTG--IDILKLVKENPH---TRRSP 91 (152)
T ss_dssp HHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBH--HHHHHHHHHSTT---TTTSC
T ss_pred HHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcH--HHHHHHHHhccc---ccCCC
Confidence 357888899998866677777777777766521 13467877763 4455 578888866321 23678
Q ss_pred EEEecCCChh
Q 022147 200 LGVVPAGTGN 209 (302)
Q Consensus 200 lgiIP~GTgN 209 (302)
+.++-.....
T Consensus 92 ii~~t~~~~~ 101 (152)
T 3heb_A 92 VVILTTTDDQ 101 (152)
T ss_dssp EEEEESCCCH
T ss_pred EEEEecCCCH
Confidence 8777665443
No 319
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=34.46 E-value=27 Score=25.86 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.3
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...++++...|+++|+..+.
T Consensus 85 r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 85 RTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHh
Confidence 5788999999999999999998874
No 320
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=34.41 E-value=57 Score=27.27 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=36.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC-CchHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG-DGILVE 181 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG-DGTl~e 181 (302)
.++|++++-|..+- . ..+...|+.+|..+.+..... . ..++ .++|+||+-|| .|++.+
T Consensus 12 ~~~~i~~id~~~~~---~-----~~~~~~l~~~G~~~~vv~~~~--~----~~~l--~~~DglIl~GG~p~~~~~ 70 (212)
T 2a9v_A 12 HMLKIYVVDNGGQW---T-----HREWRVLRELGVDTKIVPNDI--D----SSEL--DGLDGLVLSGGAPNIDEE 70 (212)
T ss_dssp CCCBEEEEEESCCT---T-----CHHHHHHHHTTCBCCEEETTS--C----GGGG--TTCSEEEEEEECSCGGGT
T ss_pred ccceEEEEeCCCcc---H-----HHHHHHHHHCCCEEEEEeCCC--C----HHHH--hCCCEEEECCCCCCCCcc
Confidence 45678888775332 2 234566777888877765432 1 1122 34999999999 787654
No 321
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=34.00 E-value=85 Score=25.64 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHH
Q 022147 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (302)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ 180 (302)
++||=|..+- ...+...|+++|.++.++.... .... ++...++|+||+-||-|+..
T Consensus 4 i~iid~~~s~--------~~~~~~~l~~~G~~~~v~~~~~-~~~~----~~~~~~~dglil~gG~~~~~ 59 (195)
T 1qdl_B 4 TLIIDNYDSF--------VYNIAQIVGELGSYPIVIRNDE-ISIK----GIERIDPDRLIISPGPGTPE 59 (195)
T ss_dssp EEEEECSCSS--------HHHHHHHHHHTTCEEEEEETTT-SCHH----HHHHHCCSEEEECCCSSCTT
T ss_pred EEEEECCCch--------HHHHHHHHHhCCCEEEEEeCCC-CCHH----HHhhCCCCEEEECCCCCChh
Confidence 7777765332 1245677888898887766532 1222 22222689999988866543
No 322
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=33.90 E-value=43 Score=30.25 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=36.7
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl 179 (302)
.-+.|+-+|-.-.+++.+....-++..-.+.|+.+ +..++..+ .++.+.+...++|.||++|=--.|
T Consensus 27 ~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv--~~~~~~~~-~~~~~~l~~~~~Dliv~~~~~~il 93 (314)
T 3tqq_A 27 RVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPI--IQPFSLRD-EVEQEKLIAMNADVMVVVAYGLIL 93 (314)
T ss_dssp EEEEEECCCC----------CCHHHHHHHHTTCCE--ECCSCSSS-HHHHHHHHTTCCSEEEEESCCSCC
T ss_pred eEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCE--ECcccCCC-HHHHHHHHhcCCCEEEEcCccccc
Confidence 44667777765555554444456777888889885 33333322 245566666689999998864444
No 323
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=33.80 E-value=59 Score=27.06 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhH
Q 022147 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGM 211 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~ 211 (302)
.++.++.+.+.++++.. ..-+++.+.++++ ..++|.||.-||=+.+ |-+. .++|+.-||. |+.|+
T Consensus 19 ~~~~i~~e~~~~i~i~~-~~l~~~v~~a~~~-~~~~dVIISRGgta~~------lr~~------~~iPVV~I~~-s~~Di 83 (196)
T 2q5c_A 19 LFPKLALEKNFIPITKT-ASLTRASKIAFGL-QDEVDAIISRGATSDY------IKKS------VSIPSISIKV-TRFDT 83 (196)
T ss_dssp HHHHHHHHHTCEEEEEE-CCHHHHHHHHHHH-TTTCSEEEEEHHHHHH------HHTT------CSSCEEEECC-CHHHH
T ss_pred HHHHHHhhhCCceEEEE-CCHHHHHHHHHHh-cCCCeEEEECChHHHH------HHHh------CCCCEEEEcC-CHhHH
Confidence 44445555555777654 4467888999998 7899999999986532 2222 3678888887 45677
Q ss_pred HHhh
Q 022147 212 IKSL 215 (302)
Q Consensus 212 A~sL 215 (302)
-++|
T Consensus 84 l~al 87 (196)
T 2q5c_A 84 MRAV 87 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 324
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=33.63 E-value=46 Score=26.73 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=33.4
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVE 181 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~e 181 (302)
|+++|++=.. .|..+++. +.+...|... .+++...... .. ..+ ..||.||++. |+|.+..
T Consensus 1 Mki~IvY~S~--tGnT~~iA-~~Ia~~l~~~--~v~i~~~~~~-~~----~~l--~~~d~ii~g~pt~~~G~~p~ 63 (175)
T 1ag9_A 1 AITGIFFGSD--TGNTENIA-KMIQKQLGKD--VADVHDIAKS-SK----EDL--EAYDILLLGIPTWYYGEAQC 63 (175)
T ss_dssp CCEEEEECCS--SSHHHHHH-HHHHHHHCTT--TEEEEEGGGC-CH----HHH--HTCSEEEEECCEETTTEECH
T ss_pred CEEEEEEECC--CchHHHHH-HHHHHHhccC--ceEEEEcccC-Ch----hHh--hhCCEEEEEEeecCCCcChH
Confidence 4677887544 45565554 5777777654 3555443221 11 222 3688877765 6676555
No 325
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=33.63 E-value=40 Score=27.61 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=31.9
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
.|+++.+.+...+ -.||.-||.|..-.+..+.++.. ...+|++|.
T Consensus 21 ~A~~lg~~La~~g-~~lV~Ggg~GiM~aa~~gAl~~g------G~tiGV~~~ 65 (171)
T 1weh_A 21 RWVRYGEVLAEEG-FGLACGGYQGGMEALARGVKAKG------GLVVGVTAP 65 (171)
T ss_dssp HHHHHHHHHHHTT-EEEEECCSSTHHHHHHHHHHHTT------CCEEECCCG
T ss_pred HHHHHHHHHHHCC-CEEEeCChhhHHHHHHHHHHHcC------CcEEEEecc
Confidence 4566677776544 35777788888888888887653 568888775
No 326
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=33.46 E-value=1.3e+02 Score=21.47 Aligned_cols=90 Identities=10% Similarity=0.067 Sum_probs=49.7
Q ss_pred eEEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC-cEEEEEeCCcchHHHHH
Q 022147 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKEIV 159 (302)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~-~~~v~~T~~~~~a~el~ 159 (302)
-+.|....|..|......+.+.....+..-.++.+..+........ +.++..++..++ .+.+...... +++
T Consensus 26 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~~----~~~ 97 (138)
T 4evm_A 26 YLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSE----ADFKNWYKGLDYKNLPVLVDPSG----KLL 97 (138)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCH----HHHHHHHTTCCCTTCCEEECTTC----HHH
T ss_pred EEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhH----HHHHHHHhhcCCCCeeEEECcch----HHH
Confidence 3445556677777766666666554333333444433332222222 456677777776 5554443322 466
Q ss_pred HHhhcCCCceEEEEcCCch
Q 022147 160 KVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 160 ~~~~~~~~d~IVvvGGDGT 178 (302)
+.+....+-.++++.-||.
T Consensus 98 ~~~~v~~~P~~~lid~~G~ 116 (138)
T 4evm_A 98 ETYGVRSYPTQAFIDKEGK 116 (138)
T ss_dssp HHTTCCSSSEEEEECTTCC
T ss_pred HHcCcccCCeEEEECCCCc
Confidence 6666566667777777774
No 327
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=32.75 E-value=1.6e+02 Score=24.50 Aligned_cols=57 Identities=12% Similarity=0.006 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCc--E--EEEEeCCcchHHHHHHHhhc-CCCceEEEEcCCch-----HHHHHHHHh
Q 022147 131 DDVKPLLEDANIQ--F--TVQETTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI-----LVEVVNGLL 187 (302)
Q Consensus 131 ~~v~~~L~~ag~~--~--~v~~T~~~~~a~el~~~~~~-~~~d~IVvvGGDGT-----l~evvngL~ 187 (302)
..+..+|++.|++ . ..+..+..+...+..+++.. .++|.||+.||=|- ..|++..+.
T Consensus 26 ~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~~D~T~ea~~~~~ 92 (195)
T 1di6_A 26 PALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVA 92 (195)
T ss_dssp HHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCccHHHHHHHHh
Confidence 4677888888876 2 22334444444444444433 36999999999652 345555543
No 328
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=32.71 E-value=30 Score=30.48 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=29.9
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv 173 (302)
.|+|++++ .|..-.. -...+.+.|+..|+++++..+...... ..+ +.+||.||..
T Consensus 3 ~m~~vLiV----~g~~~~~--~a~~l~~aL~~~g~~V~~i~~~~~~~~---~~~--L~~yDvIIl~ 57 (259)
T 3rht_A 3 AMTRVLYC----GDTSLET--AAGYLAGLMTSWQWEFDYIPSHVGLDV---GEL--LAKQDLVILS 57 (259)
T ss_dssp ---CEEEE----ESSCTTT--THHHHHHHHHHTTCCCEEECTTSCBCS---SHH--HHTCSEEEEE
T ss_pred CCceEEEE----CCCCchh--HHHHHHHHHHhCCceEEEecccccccC---hhH--HhcCCEEEEc
Confidence 46788887 2332111 124677889999998887765543210 012 2367777765
No 329
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=32.61 E-value=90 Score=25.20 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCC
Q 022147 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGD 176 (302)
.+...|+.+|.++.++.... .. .++....+|+||+-||.
T Consensus 15 ~~~~~l~~~G~~~~~~~~~~--~~----~~~~~~~~dglil~Gg~ 53 (189)
T 1wl8_A 15 RIWRTLRYLGVETKIIPNTT--PL----EEIKAMNPKGIIFSGGP 53 (189)
T ss_dssp HHHHHHHHTTCEEEEEETTC--CH----HHHHHTCCSEEEECCCS
T ss_pred HHHHHHHHCCCeEEEEECCC--Ch----HHhcccCCCEEEECCCC
Confidence 55677888898887765432 22 22332469999999995
No 330
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=32.60 E-value=30 Score=31.94 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=51.9
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc----------------------chHH---HHHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----------------------LHAK---EIVKV 161 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~----------------------~~a~---el~~~ 161 (302)
..++|+.|++-| |- .... + ......|+.+|+++++.-.+.. +... .-..+
T Consensus 10 ~~~~kv~ill~d--g~-e~~E-~-~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 84 (396)
T 3uk7_A 10 ANSRTVLILCGD--YM-EDYE-V-MVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDE 84 (396)
T ss_dssp -CCCEEEEECCT--TE-EHHH-H-HHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGG
T ss_pred hcCCeEEEEeCC--Cc-cHHH-H-HHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhh
Confidence 345788888864 21 2222 2 2455678889988876644321 0000 00112
Q ss_pred hhcCCCceEEEEcCCchHH--------HHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 162 LDLSKYDGIVCVSGDGILV--------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 162 ~~~~~~d~IVvvGGDGTl~--------evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
++...||.|++.||.|+-+ +.+....+ ...+|+-|-.|+. .+|+.
T Consensus 85 ~~~~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~-------~~~~i~aiC~G~~-~La~a 137 (396)
T 3uk7_A 85 VDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSR-------SGKPIASICHGQL-ILAAA 137 (396)
T ss_dssp CCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHH-------TTCCEEEETTTHH-HHHHT
T ss_pred cCcccCCEEEECCCcchhhcccCHHHHHHHHHHHH-------cCCEEEEECchHH-HHHhc
Confidence 2234699999999988632 12222222 2678988888873 44443
No 331
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=32.33 E-value=1.2e+02 Score=25.95 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCC---cEEEE--EeCC-cchHHHHHHHhhcCCCceEEEEcC
Q 022147 131 DDVKPLLEDANI---QFTVQ--ETTQ-QLHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 131 ~~v~~~L~~ag~---~~~v~--~T~~-~~~a~el~~~~~~~~~d~IVvvGG 175 (302)
+-++..+.+.|. .+.+. .++. ++...++.+.+...++|+||+.|.
T Consensus 21 ~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 21 KGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred HHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 577788888888 75553 3332 233445667776678999998863
No 332
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=32.13 E-value=1.5e+02 Score=21.65 Aligned_cols=90 Identities=11% Similarity=0.121 Sum_probs=52.3
Q ss_pred eEEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHH
Q 022147 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (302)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~ 160 (302)
-+.|....|..|......+.+.........-.++.+|........ +.++..++..++.+.+...... ++++
T Consensus 38 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~-----~~~~~~~~~~~~~~~~~~d~~~----~~~~ 108 (145)
T 3erw_A 38 ILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQ-----QVVEDFIKANKLTFPIVLDSKG----ELMK 108 (145)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCH-----HHHHHHHHHTTCCSCEEECSSS----HHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCH-----HHHHHHHHHcCCceeEEEcCch----hHHH
Confidence 344555567777776666666655444233445556654432222 3456677777877765543322 4566
Q ss_pred HhhcCCCceEEEEcCCchH
Q 022147 161 VLDLSKYDGIVCVSGDGIL 179 (302)
Q Consensus 161 ~~~~~~~d~IVvvGGDGTl 179 (302)
.+....+-.++++..||.+
T Consensus 109 ~~~v~~~P~~~lid~~G~i 127 (145)
T 3erw_A 109 EYHIITIPTSFLLNEKGEI 127 (145)
T ss_dssp HTTCCEESEEEEECTTCCE
T ss_pred hcCcCccCeEEEEcCCCcE
Confidence 6655566677888778753
No 333
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=32.12 E-value=41 Score=30.39 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl 179 (302)
.-+.|+-||-.-.+++.++....++....++|+.+ +..+...+ .++.+.+...++|.||++|=--.|
T Consensus 28 ~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv--~~~~~~~~-~~~~~~l~~~~~Dliv~~~y~~il 94 (314)
T 1fmt_A 28 NVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPV--FQPVSLRP-QENQQLVAELQADVMVVVAYGLIL 94 (314)
T ss_dssp EEEEEECCCCBC------CBCCHHHHHHHHTTCCE--ECCSCSCS-HHHHHHHHHTTCSEEEEESCCSCC
T ss_pred cEEEEEeCCCCccccccccCcCHHHHHHHHcCCcE--EecCCCCC-HHHHHHHHhcCCCEEEEeeccccC
Confidence 44567778865444444443346777778889886 23333222 244455555679999998854444
No 334
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=31.65 E-value=1.2e+02 Score=26.79 Aligned_cols=96 Identities=14% Similarity=0.206 Sum_probs=52.6
Q ss_pred CCCcEEEEEE-cCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-----------cchHHHHHHHhhcCCCceEEEEc
Q 022147 107 GRPKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-----------QLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 107 ~r~~r~~viv-NP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-----------~~~a~el~~~~~~~~~d~IVvvG 174 (302)
..++|+++|+ .|.. .+...++. +.+...++..|++++++.-.. +.+..++.+++. ..|+||++.
T Consensus 56 ~~~mKILiI~GS~R~-~S~T~~La-~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~--~ADgiV~aS 131 (279)
T 2fzv_A 56 APPVRILLLYGSLRA-RSFSRLAV-EEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSE--WSEGQVWCS 131 (279)
T ss_dssp CSCCEEEEEESCCSS-SCHHHHHH-HHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHH--HCSEEEEEE
T ss_pred CCCCEEEEEEeCCCC-CCHHHHHH-HHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHH--HCCeEEEEc
Confidence 3567887777 4443 34444444 577777888888877654322 223556666664 468888765
Q ss_pred C--CchHHHHHHHHhcCccc-----cccCCccEEEecCC
Q 022147 175 G--DGILVEVVNGLLEREDW-----NDAIKVPLGVVPAG 206 (302)
Q Consensus 175 G--DGTl~evvngL~~~~~~-----~~~~~~plgiIP~G 206 (302)
= -|++.-.+..++++-.. ......|.+++-.+
T Consensus 132 P~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~ts 170 (279)
T 2fzv_A 132 PERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVS 170 (279)
T ss_dssp EEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEEC
T ss_pred CccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEEC
Confidence 2 34444444444433110 11234566766654
No 335
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=31.63 E-value=1.6e+02 Score=22.04 Aligned_cols=95 Identities=9% Similarity=0.012 Sum_probs=50.2
Q ss_pred EEecCCChHHHHHH-HHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcch-HHHHH
Q 022147 82 FVFEPLSEDSKRLW-CEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIV 159 (302)
Q Consensus 82 ~~~~~~~~~~~~~w-~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~-a~el~ 159 (302)
+.|....|..|..- ...+.+.........-.++-+|.......... .+.++..++..++.+.+........ ..+++
T Consensus 33 v~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 110 (158)
T 3eyt_A 33 IEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMT--PISLKAFLHEYRIKFPVGVDQPGDGAMPRTM 110 (158)
T ss_dssp EEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSC--HHHHHHHHHHTTCCSCEEEECCCSSSSCHHH
T ss_pred EEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCC--HHHHHHHHHHcCCCceEEEcCccchhhHHHH
Confidence 34555556666654 55555555444322333344453322111111 2467778888888876554433211 11466
Q ss_pred HHhhcCCCceEEEEcCCch
Q 022147 160 KVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 160 ~~~~~~~~d~IVvvGGDGT 178 (302)
+.+.....-..+++..||.
T Consensus 111 ~~~~v~~~P~~~lid~~G~ 129 (158)
T 3eyt_A 111 AAYQMRGTPSLLLIDKAGD 129 (158)
T ss_dssp HHTTCCSSSEEEEECTTSE
T ss_pred HHcCCCCCCEEEEECCCCC
Confidence 6666566667777877774
No 336
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=31.63 E-value=70 Score=25.84 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCC------cchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEE
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~------~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgi 202 (302)
+.+.++..|+..|+++.-+-|.+ |.-+..+++.+. .. ....||
T Consensus 14 lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~------------------------~g-------~~d~GI 62 (149)
T 3he8_A 14 LKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVK------------------------SG-------ECDRGI 62 (149)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHH------------------------TT-------SSSEEE
T ss_pred HHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHH------------------------cC-------CCCEEE
Confidence 34688899999998776543322 233333333332 22 446788
Q ss_pred ecCCChhhHHHhhhh
Q 022147 203 VPAGTGNGMIKSLLD 217 (302)
Q Consensus 203 IP~GTgN~~A~sL~~ 217 (302)
+=||||++++-+.+-
T Consensus 63 liCGTGiG~siaANK 77 (149)
T 3he8_A 63 VICGTGLGISIAANK 77 (149)
T ss_dssp EEESSSHHHHHHHHT
T ss_pred EEcCCcHHHHHHhhc
Confidence 889999998887753
No 337
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=31.60 E-value=1e+02 Score=22.97 Aligned_cols=56 Identities=14% Similarity=0.331 Sum_probs=34.8
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG 175 (302)
++|++++.. .|-+.++..+.++..+++.|+++++..+.-.+ +.+.. .++|.|+ +|=
T Consensus 3 mkkIll~Cg----~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~-~~~~~-----~~~Dvil-~~p 58 (106)
T 1e2b_A 3 KKHIYLFSS----AGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL-AGEKG-----QNADVVL-LGP 58 (106)
T ss_dssp CEEEEEECS----SSTTTHHHHHHHHHHHHHSCCSEEEEEECSSS-TTHHH-----HHCSEEE-ECT
T ss_pred CcEEEEECC----CchhHHHHHHHHHHHHHHCCCCeEEEEecHHH-HHhhc-----cCCCEEE-Ecc
Confidence 456776654 23333356679999999999999877665433 33322 2477544 444
No 338
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=31.59 E-value=57 Score=29.55 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=36.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl 179 (302)
.-+.|+-||-.-.+++.+.....++..-++.|+.+. ..+...+ .++.+.+...++|.||++|=--.|
T Consensus 32 ~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~--~~~~~~~-~~~~~~l~~~~~Dliv~~~y~~il 98 (318)
T 3q0i_A 32 EIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVY--QPENFKS-DESKQQLAALNADLMVVVAYGLLL 98 (318)
T ss_dssp EEEEEECCCC---------CCCHHHHHHHHTTCCEE--CCSCSCS-HHHHHHHHTTCCSEEEESSCCSCC
T ss_pred cEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEE--ccCcCCC-HHHHHHHHhcCCCEEEEeCccccC
Confidence 446677787654444443434567777888898862 2333222 245566666689998888754444
No 339
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=31.52 E-value=2.1e+02 Score=23.20 Aligned_cols=44 Identities=5% Similarity=-0.037 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv 173 (302)
.++.++......|++++.+.+.+.++..+...+.. .++|+||+-
T Consensus 31 i~~~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~-~~~dgiIIN 74 (154)
T 1uqr_A 31 IEQHLQQSAQAQGYELDYFQANGEESLINRIHQAF-QNTDFIIIN 74 (154)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSHHHHHHHHHHTT-TTCCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhh-hcCcEEEEC
Confidence 34566667777899999999999988887777764 357777643
No 340
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=31.42 E-value=1.1e+02 Score=29.42 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~ 147 (302)
...|.+.+.+.++. .+++-|++.|..|.+ .. .+..+|+..|+++...
T Consensus 178 ~~~Yi~~l~~~i~~---~~~lkIvvD~~~Ga~--~~----~~~~il~~lG~~v~~~ 224 (485)
T 3uw2_A 178 ADQYVERIVGDIKL---TRPLKLVVDAGNGVA--GP----LATRLFKALGCELVEL 224 (485)
T ss_dssp HHHHHHHHHTTCCC---SSCCCEEEECTTSTH--HH----HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhcCc---ccCCEEEEEcCCCcH--HH----HHHHHHHHcCCeEEEe
Confidence 44577777776542 245789999966643 32 3456788888876543
No 341
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=31.38 E-value=69 Score=24.64 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=35.1
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCch
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGI 178 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGT 178 (302)
+++++|++-. ..|.++++. +.+...|...++++++.... + ..+...+|.|+++. |+|.
T Consensus 1 M~ki~I~Y~S--~tGnT~~~A-~~ia~~l~~~g~~v~~~~~~---~------~~~l~~~d~vi~g~pt~g~g~ 61 (147)
T 2hna_A 1 MADITLISGS--TLGGAEYVA-EHLAEKLEEAGFTTETLHGP---L------LEDLPASGIWLVISSTHGAGD 61 (147)
T ss_dssp CCSEEEECCT--TSCCCHHHH-HHHHHHHHHTTCCEEEECCT---T------SCSSCSEEEEEEECCTTTTCC
T ss_pred CCeEEEEEEC--CchHHHHHH-HHHHHHHHHCCCceEEecCC---C------HHHcccCCeEEEEECccCCCC
Confidence 3567888854 445555544 68888888888877655321 1 11234677777664 4664
No 342
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=31.36 E-value=65 Score=26.00 Aligned_cols=74 Identities=9% Similarity=0.130 Sum_probs=42.3
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc-------------c---hHHHHHHHhhcCCCceEEE
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-------------L---HAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~-------------~---~a~el~~~~~~~~~d~IVv 172 (302)
++++++|+-. .+...++. +.+...+++.|++++++.-... + ...+ ..++ ..+|.||+
T Consensus 4 mmkilii~~S---~g~T~~la-~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l--~~aD~ii~ 76 (199)
T 2zki_A 4 KPNILVLFYG---YGSIVELA-KEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDM--RWADGFAI 76 (199)
T ss_dssp CCEEEEEECC---SSHHHHHH-HHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHH--HHCSEEEE
T ss_pred CcEEEEEEeC---ccHHHHHH-HHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCccccccccc-HHHH--HhCCEEEE
Confidence 5688877765 44555544 6777888888888877654332 0 0101 2233 24788877
Q ss_pred EcC--CchHHHHHHHHhcC
Q 022147 173 VSG--DGILVEVVNGLLER 189 (302)
Q Consensus 173 vGG--DGTl~evvngL~~~ 189 (302)
..- -|.+...+..++++
T Consensus 77 gsP~y~~~~~~~lk~~ld~ 95 (199)
T 2zki_A 77 GSPTRYGNMAGGLKTFLDT 95 (199)
T ss_dssp EEECBTTBCCHHHHHHHHT
T ss_pred ECCccccCccHHHHHHHHH
Confidence 641 24555555555554
No 343
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=31.18 E-value=1.1e+02 Score=24.89 Aligned_cols=95 Identities=19% Similarity=0.286 Sum_probs=57.5
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC-cEEEEEeCCcchHHHHHHHhhcCCCceEEEEc----CCch----
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS----GDGI---- 178 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~-~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG----GDGT---- 178 (302)
.+.|+.|+.-.+... -..+.. +-....|..+|. +++++.....-+.--.++.+.. +||.||++| |+-.
T Consensus 16 ~~~ri~IV~arfn~~-I~~~Ll-~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~-~yDavIaLG~VIrG~T~Hfd~ 92 (160)
T 2c92_A 16 SGVRLAIVASSWHGK-ICDALL-DGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELAR-NHDAVVALGVVIRGQTPHFDY 92 (160)
T ss_dssp TTCCEEEEEECSSHH-HHHHHH-HHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHT-SCSEEEEEEEEECCSSTHHHH
T ss_pred CCCEEEEEEEeCcHH-HHHHHH-HHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHh-cCCEEEEEeeeecCCchHHHH
Confidence 456788887654432 122333 455667788887 6777777777777666777764 699999998 5443
Q ss_pred -HHHHHHHHhcCccccccCCccEEEecCC
Q 022147 179 -LVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 179 -l~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
-+++.+||++-.- +...++-.|+|-..
T Consensus 93 Va~~vs~Gl~~v~L-~~~vPV~~GVLT~~ 120 (160)
T 2c92_A 93 VCDAVTQGLTRVSL-DSSTPIANGVLTTN 120 (160)
T ss_dssp HHHHHHHHHHHHHH-HHTCCEEEEEEEES
T ss_pred HHHHHHHHHHHHHh-hcCCCEEEEEcCCC
Confidence 3456667765311 11234445666554
No 344
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=31.18 E-value=1.2e+02 Score=24.23 Aligned_cols=76 Identities=9% Similarity=0.097 Sum_probs=41.7
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHH--------------HHHHHhhcCCCceEEEEc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK--------------EIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~--------------el~~~~~~~~~d~IVvvG 174 (302)
++++++|+=.. .+...++. +.+...++..|++++++.-....... ....++ ..+|.||++.
T Consensus 5 M~kilii~~S~--~g~T~~la-~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~gs 79 (200)
T 2a5l_A 5 SPYILVLYYSR--HGATAEMA-RQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDL--KNCAGLALGS 79 (200)
T ss_dssp CCEEEEEECCS--SSHHHHHH-HHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHH--HTCSEEEEEE
T ss_pred cceEEEEEeCC--CChHHHHH-HHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHH--HHCCEEEEEc
Confidence 45788777543 44555544 67888888888887765443310000 012233 3688888764
Q ss_pred C--CchHHHHHHHHhcC
Q 022147 175 G--DGILVEVVNGLLER 189 (302)
Q Consensus 175 G--DGTl~evvngL~~~ 189 (302)
- -|.+...+..++++
T Consensus 80 P~y~~~~~~~lk~~ld~ 96 (200)
T 2a5l_A 80 PTRFGNMASPLKYFLDG 96 (200)
T ss_dssp ECBTTBCCHHHHHHHHT
T ss_pred ChhccCccHHHHHHHHH
Confidence 2 24455555555544
No 345
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=31.05 E-value=49 Score=27.86 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 154 ~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
.|+++.+.+...++ .||.-|+-|..-.+..+.++.. ...+|+||.
T Consensus 46 ~A~~lg~~LA~~G~-~vVsGg~~GiM~aa~~gAl~~G------G~~iGVlP~ 90 (195)
T 1rcu_A 46 ICLELGRTLAKKGY-LVFNGGRDGVMELVSQGVREAG------GTVVGILPD 90 (195)
T ss_dssp HHHHHHHHHHHTTC-EEEECCSSHHHHHHHHHHHHTT------CCEEEEEST
T ss_pred HHHHHHHHHHHCCC-EEEeCCHHHHHHHHHHHHHHcC------CcEEEEeCC
Confidence 34455666655444 3444555565555666666542 467888886
No 346
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=30.76 E-value=93 Score=25.05 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=35.6
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHh-cCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~-ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG 174 (302)
.++++++|+=. ..+...++. +.+...++. .|++++++...... ..++ ..+|.||++.
T Consensus 3 ~M~kiliiy~S--~~GnT~~~a-~~i~~~l~~~~g~~v~~~~l~~~~-----~~~l--~~aD~ii~gs 60 (188)
T 2ark_A 3 AMGKVLVIYDT--RTGNTKKMA-ELVAEGARSLEGTEVRLKHVDEAT-----KEDV--LWADGLAVGS 60 (188)
T ss_dssp CCEEEEEEECC--SSSHHHHHH-HHHHHHHHTSTTEEEEEEETTTCC-----HHHH--HHCSEEEEEE
T ss_pred CCCEEEEEEEC--CCcHHHHHH-HHHHHHHhhcCCCeEEEEEhhhCC-----HHHH--HhCCEEEEEe
Confidence 35688888754 345555544 678888887 78888777654432 1222 2478877764
No 347
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=30.61 E-value=1.7e+02 Score=23.91 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=24.3
Q ss_pred CcEEEEEE-cCCCCCCchhhhHHHHHHHHHHhc--CCcEEEEEe
Q 022147 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQET 149 (302)
Q Consensus 109 ~~r~~viv-NP~sG~~~a~~~~~~~v~~~L~~a--g~~~~v~~T 149 (302)
|+|+++|. +|...++...++. +.+...++++ |.+++++.-
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~-~~~~~~~~~~~~g~~v~~~dL 43 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLA-EVFLAAYREAHPQARVARREV 43 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHH-HHHHHHHHHHCTTCCEEEEES
T ss_pred CCEEEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCCeEEEEEC
Confidence 35666655 6665334455444 5777777776 777776543
No 348
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=30.15 E-value=37 Score=28.39 Aligned_cols=93 Identities=12% Similarity=0.130 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHH--------hcCCcEEEEEeCCcc----hHHHH-----HHHhhcCCCceEE
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLE--------DANIQFTVQETTQQL----HAKEI-----VKVLDLSKYDGIV 171 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~--------~ag~~~~v~~T~~~~----~a~el-----~~~~~~~~~d~IV 171 (302)
++|+.|++-|..-.-.. ......|+ ..++++++.-.+... +...+ ..++....||.|+
T Consensus 5 m~~v~ill~~g~~~~e~-----~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~li 79 (212)
T 3efe_A 5 TKKAFLYVFNTMSDWEY-----GYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLI 79 (212)
T ss_dssp CCCEEEEECTTCCTTTT-----HHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEE
T ss_pred ccEEEEEECCCccHHHH-----HHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEE
Confidence 56788888773322221 13445566 456777665443210 00000 1122223799999
Q ss_pred EEcCCch-------HHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 172 CVSGDGI-------LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 172 vvGGDGT-------l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
+.||.|. +.+.+.....+ ..+|+-|-.|+ -.+|.+
T Consensus 80 vpGG~~~~~~~~~~l~~~l~~~~~~-------gk~iaaiC~G~-~~La~a 121 (212)
T 3efe_A 80 LPGGTTWSEEIHQPILERIGQALKI-------GTIVAAICGAT-DALANM 121 (212)
T ss_dssp ECCCSCTTSGGGHHHHHHHHHHHHH-------TCEEEEETHHH-HHHHHT
T ss_pred ECCCCccccccCHHHHHHHHHHHHC-------CCEEEEEcHHH-HHHHHc
Confidence 9999874 22233333222 57888888885 555554
No 349
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=30.15 E-value=1.6e+02 Score=27.98 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=42.9
Q ss_pred HHHH-HHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC-----------CcchHHHH
Q 022147 91 SKRL-WCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-----------QQLHAKEI 158 (302)
Q Consensus 91 ~~~~-w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~-----------~~~~a~el 158 (302)
.... +.+.+.+.+... ..+.+-|++.+..| .+.. .+..+|+..|+++.....+ .+++...+
T Consensus 158 ~~~~~Yi~~~~~~~~~~-~~~~lkivvd~~~G--a~~~----~~~~~l~~lG~~v~~l~~~~~f~~~~~~p~~~e~l~~l 230 (481)
T 4hjh_A 158 AALQAYADRYAGFLGKG-SLNGLRVGVYQHSS--VARD----LLMYLLTTLGVEPVALGRSDIFVPVDTEALRPEDIALL 230 (481)
T ss_dssp HHHHHHHHHHHHHHCTT-TTTTCEEEEEEETC--TTHH----HHHHHHHHTTCEEEEEEECSSCCCCCTTSCCHHHHHHH
T ss_pred ccHHHHHHHHHHhcCcc-cccCCEEEEECCCC--hHHH----HHHHHHHHcCCeEEEecCCCCCCCCCCCCCCHHHHHHH
Confidence 4455 778777766432 12345666777444 4432 3567788889877554321 12233344
Q ss_pred HHHhhcCCCceEEEEcCCc
Q 022147 159 VKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 159 ~~~~~~~~~d~IVvvGGDG 177 (302)
.+.+...+.|..++.=|||
T Consensus 231 ~~~v~~~~aDlgia~DgDa 249 (481)
T 4hjh_A 231 AQWGKSDRLDAIVSTDGDA 249 (481)
T ss_dssp HHHHTSTTCSEEEEECTTS
T ss_pred HHHHHhcCCCEEEEECCCC
Confidence 4444444555555544443
No 350
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=30.12 E-value=34 Score=27.17 Aligned_cols=25 Identities=12% Similarity=0.367 Sum_probs=22.0
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...++++.+.|+++|+..+.
T Consensus 87 r~~~l~A~s~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 87 CECLFQAEDRDDMLAWIKTIQESSN 111 (168)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 4699999999999999999988763
No 351
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=30.07 E-value=40 Score=28.43 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=23.0
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~ 105 (302)
+.+.|.+.++++.+.|+++|+..+..
T Consensus 184 r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 184 RIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999988754
No 352
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=30.03 E-value=1.7e+02 Score=21.68 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=49.7
Q ss_pred eEEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHH
Q 022147 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (302)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~ 160 (302)
-+.|....|..|..-...+.+.........-.++-||.... . +.++..++..++.+........+...++++
T Consensus 36 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~----~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 107 (143)
T 4fo5_A 36 LLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEK----E----SIFTETVKIDKLDLSTQFHEGLGKESELYK 107 (143)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSC----H----HHHHHHHHHHTCCGGGEEECTTGGGSHHHH
T ss_pred EEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCC----H----HHHHHHHHHhCCCCceeeecccccchHHHH
Confidence 44466666777776666666655544333334455565321 1 244566666677652222333333345666
Q ss_pred HhhcCCCceEEEEcCCchH
Q 022147 161 VLDLSKYDGIVCVSGDGIL 179 (302)
Q Consensus 161 ~~~~~~~d~IVvvGGDGTl 179 (302)
.+.....-..+++.-||.+
T Consensus 108 ~~~v~~~P~~~lid~~G~i 126 (143)
T 4fo5_A 108 KYDLRKGFKNFLINDEGVI 126 (143)
T ss_dssp HTTGGGCCCEEEECTTSBE
T ss_pred HcCCCCCCcEEEECCCCEE
Confidence 6655555667778888864
No 353
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=30.00 E-value=1.5e+02 Score=25.30 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=30.6
Q ss_pred cCCCceEEEEcCC----chHHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 164 LSKYDGIVCVSGD----GILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 164 ~~~~d~IVvvGGD----GTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
..+-+++++.+|| |+..+.+..+.+. .+++-+||+=|.=..|.+
T Consensus 75 ~~g~~V~~l~~GDP~i~~~~~~l~~~l~~~-------gi~veviPGiSS~~aa~a 122 (253)
T 4e16_A 75 ENNKSVVRLQTGDFSIYGSIREQVEDLNKL-------NIDYDCTPGVSSFLGAAS 122 (253)
T ss_dssp HTTCCEEEEESBCTTTTCCHHHHHHHHHHH-------TCCEEEECCCCHHHHHHH
T ss_pred HCCCcEEEEeCCCCccccCHHHHHHHHHHC-------CCCEEEECCHHHHHHHHH
Confidence 3566888888999 6777777766543 577888888765444433
No 354
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=29.91 E-value=1.3e+02 Score=28.63 Aligned_cols=50 Identities=10% Similarity=0.132 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE
Q 022147 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~ 147 (302)
+....+.+.+.+.++. +.+.+-|++.|..|.+.. .+..+|+..|+++...
T Consensus 175 d~~~~Y~~~l~~~~~~--~~~~lkivvD~~nG~~~~------~~~~ll~~lG~~v~~l 224 (469)
T 3pdk_A 175 EGGQKYLQYIKQTVEE--DFSGLHIALDCAHGATSS------LAPYLFADLEADISTM 224 (469)
T ss_dssp HHHHHHHHHHHTTCSS--CCTTCEEEEECTTSTTTT------HHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHHhcCc--ccCCCEEEEECCCchHHH------HHHHHHHHcCCEEEEE
Confidence 4556788888777642 335678999997775542 2456788888876543
No 355
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=29.73 E-value=78 Score=25.76 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=40.8
Q ss_pred EEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC------CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~------~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
.|-+-++|- -+.+.++..|++.|+++.-+-|. +|.-+..+++.+ .
T Consensus 16 ~igsDhaG~-----~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V------------------------~ 66 (155)
T 1o1x_A 16 AIASDHAAF-----ELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSI------------------------L 66 (155)
T ss_dssp EEEECSTTH-----HHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHH------------------------H
T ss_pred EEeeCchHH-----HHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHH------------------------H
Confidence 444555552 23468889999999877655432 222233333332 2
Q ss_pred cCccccccCCccEEEecCCChhhHHHhhh
Q 022147 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 188 ~~~~~~~~~~~plgiIP~GTgN~~A~sL~ 216 (302)
.. ....||+=||||++++-+.+
T Consensus 67 ~g-------~~d~GIliCGTGiG~siaAN 88 (155)
T 1o1x_A 67 SN-------EADFGILLCGTGLGMSIAAN 88 (155)
T ss_dssp TT-------SCSEEEEEESSSHHHHHHHT
T ss_pred cC-------CCceEEEEcCCcHHHHHHhh
Confidence 22 34678899999999988875
No 356
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=29.69 E-value=1.8e+02 Score=21.83 Aligned_cols=95 Identities=9% Similarity=0.022 Sum_probs=48.5
Q ss_pred EEecCCChHHHHH-HHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc--hHHHH
Q 022147 82 FVFEPLSEDSKRL-WCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL--HAKEI 158 (302)
Q Consensus 82 ~~~~~~~~~~~~~-w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~--~a~el 158 (302)
+.|....|..|.. -...+.+.........-.++.+|...+...... .+.++..++..++.+.+....... ...++
T Consensus 35 v~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 112 (160)
T 3lor_A 35 VEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMT--PEALKVFIDEFGIKFPVAVDMPREGQRIPST 112 (160)
T ss_dssp EEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSC--HHHHHHHHHHTTCCSCEEEECCCTTCSSCHH
T ss_pred EEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCC--HHHHHHHHHHcCCCCcEEECCccccchhhhH
Confidence 3344455666655 244555544443322233444554322211111 146677778788776655443322 12235
Q ss_pred HHHhhcCCCceEEEEcCCch
Q 022147 159 VKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 159 ~~~~~~~~~d~IVvvGGDGT 178 (302)
++.+.....-.++++..||.
T Consensus 113 ~~~~~v~~~P~~~lid~~G~ 132 (160)
T 3lor_A 113 MKKYRLEGTPSIILADRKGR 132 (160)
T ss_dssp HHHTTCCSSSEEEEECTTSB
T ss_pred HHhcccCccceEEEECCCCc
Confidence 66665556667777777774
No 357
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=29.54 E-value=63 Score=26.17 Aligned_cols=92 Identities=9% Similarity=0.147 Sum_probs=45.1
Q ss_pred CcEEEEEE-cCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC-------------cchHHHHHHHhhcCCCceEEEEc
Q 022147 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-------------QLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 109 ~~r~~viv-NP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~-------------~~~a~el~~~~~~~~~d~IVvvG 174 (302)
++|+++|+ .|+.+ +...++. +.+...++ .|.+++++.-.. +.+..++.+++. .+|.||++.
T Consensus 6 ~Mkilii~gS~r~~-g~t~~la-~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~~s 80 (193)
T 1rtt_A 6 DIKVLGISGSLRSG-SYNSAAL-QEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIR--AADALLFAT 80 (193)
T ss_dssp -CEEEEEESCCSTT-CHHHHHH-HHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHH--HCSEEEEEC
T ss_pred CceEEEEECCCCCC-ChHHHHH-HHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHH--hCCEEEEEc
Confidence 45777666 45433 4444333 45555555 566666554332 133445555554 578888764
Q ss_pred C------CchHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 175 G------DGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 175 G------DGTl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
= =+.+-..+.-+..... ......|++++-.+
T Consensus 81 P~y~~~~p~~lK~~iD~~~~~~~-~~l~gK~~~~~~t~ 117 (193)
T 1rtt_A 81 PEYNYSMAGVLKNAIDWASRPPE-QPFSGKPAAILGAS 117 (193)
T ss_dssp CEETTEECHHHHHHHHHHTCSSS-CTTTTCEEEEEEEC
T ss_pred cccccCcCHHHHHHHHHhccccC-cccCCCeEEEEEeC
Confidence 2 2344455555533100 01124566666543
No 358
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=29.54 E-value=29 Score=26.39 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=21.5
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...+.++.+.|+++|++...
T Consensus 95 ~~~~~~A~s~ee~~~Wi~ai~~a~~ 119 (124)
T 2w2x_D 95 PPVEFATDKVEELFEWFQSIREITW 119 (124)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHHH
Confidence 4578899999999999999998764
No 359
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=29.53 E-value=34 Score=27.76 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=22.6
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhhc
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~~ 105 (302)
+.+.|..+++++.+.|+++|+..+..
T Consensus 108 rt~yl~A~s~~E~~eWi~aI~~~i~~ 133 (169)
T 1btk_A 108 GPLYVFSPTEELRKRWIHQLKNVIRY 133 (169)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999998864
No 360
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=29.44 E-value=88 Score=26.22 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=16.1
Q ss_pred CccEEEecCCChhhHHHhhhh
Q 022147 197 KVPLGVVPAGTGNGMIKSLLD 217 (302)
Q Consensus 197 ~~plgiIP~GTgN~~A~sL~~ 217 (302)
....||+=||||++++-+.+-
T Consensus 89 e~d~GIliCGTGiG~sIaANK 109 (184)
T 3sgw_A 89 KVDRALMICGTGLGVAISANK 109 (184)
T ss_dssp SCSEEEEEESSSHHHHHHHHT
T ss_pred CCcEEEEEcCCcHHHhhhhhc
Confidence 446788889999988877753
No 361
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=29.44 E-value=1.4e+02 Score=22.09 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=39.8
Q ss_pred EEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC-----C-ch--HHHHH
Q 022147 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG-----D-GI--LVEVV 183 (302)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG-----D-GT--l~evv 183 (302)
++|++-. ..|..+++. +.+...+...|++++++...... . .++ ..+|.||++.- . +- +..++
T Consensus 2 i~iiy~S--~tGnT~~~a-~~i~~~l~~~g~~v~~~~~~~~~-~----~~l--~~~d~vi~g~p~y~~~~~~~~~~~~fl 71 (137)
T 2fz5_A 2 VEIVYWS--GTGNTEAMA-NEIEAAVKAAGADVESVRFEDTN-V----DDV--ASKDVILLGCPAMGSEELEDSVVEPFF 71 (137)
T ss_dssp EEEEECC--SSSHHHHHH-HHHHHHHHHTTCCEEEEETTSCC-H----HHH--HTCSEEEEECCCBTTTBCCHHHHHHHH
T ss_pred EEEEEEC--CCChHHHHH-HHHHHHHHhCCCeEEEEEcccCC-H----HHH--hcCCEEEEEccccCCCCCCHHHHHHHH
Confidence 4555533 445666554 68888888888888877544321 1 222 36888887642 1 22 66777
Q ss_pred HHHh
Q 022147 184 NGLL 187 (302)
Q Consensus 184 ngL~ 187 (302)
+.+.
T Consensus 72 ~~l~ 75 (137)
T 2fz5_A 72 TDLA 75 (137)
T ss_dssp HHHG
T ss_pred HHhh
Confidence 7664
No 362
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=29.44 E-value=97 Score=25.43 Aligned_cols=58 Identities=16% Similarity=-0.011 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCcEEEE--EeCCcchHHHHHHHhhcCCCceEEEEcCCch-----HHHHHHHHhcC
Q 022147 131 DDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLLER 189 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~--~T~~~~~a~el~~~~~~~~~d~IVvvGGDGT-----l~evvngL~~~ 189 (302)
..+...|.+.|+++..+ ..+..+...+..+++. .++|.||+.||=|- ..|++..++.+
T Consensus 26 ~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~-~~~DlVittGG~g~~~~D~T~ea~a~~~~~ 90 (172)
T 3kbq_A 26 AFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVAL-EVSDLVVSSGGLGPTFDDMTVEGFAKCIGQ 90 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHH-HHCSEEEEESCCSSSTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH-hcCCEEEEcCCCcCCcccchHHHHHHHcCC
Confidence 46788999999876533 3344444444444443 25899999998663 44555555444
No 363
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=29.36 E-value=1.3e+02 Score=24.01 Aligned_cols=51 Identities=12% Similarity=0.205 Sum_probs=32.8
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ 180 (302)
++++||-|+ | . + ..+...|+.+|.++.++. .+. ....+|+||+-||-++..
T Consensus 1 m~i~vl~~~--g--~----~-~~~~~~l~~~G~~~~~~~--~~~---------~~~~~dglil~GG~~~~~ 51 (186)
T 2ywj_A 1 MIIGVLAIQ--G--D----V-EEHEEAIKKAGYEAKKVK--RVE---------DLEGIDALIIPGGESTAI 51 (186)
T ss_dssp CEEEEECSS--S--C----C-HHHHHHHHHTTSEEEEEC--SGG---------GGTTCSEEEECCSCHHHH
T ss_pred CEEEEEecC--c--c----h-HHHHHHHHHCCCEEEEEC--ChH---------HhccCCEEEECCCCchhh
Confidence 467787664 2 1 2 133477888888766543 221 235789999999988765
No 364
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=29.36 E-value=70 Score=26.18 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=27.2
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~ 151 (302)
+++++++|+=.. .+...++. +.+...+++.|.+++++.-..
T Consensus 5 ~mmkilii~~S~--~g~T~~la-~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 5 APVKLAIVFYSS--TGTGYAMA-QEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp CCCEEEEEECCS--SSHHHHHH-HHHHHHHHHTTCEEEEEECCC
T ss_pred CCCeEEEEEECC--CChHHHHH-HHHHHHHhcCCCEEEEEeccc
Confidence 467888777433 44555544 677788888888887766443
No 365
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=29.26 E-value=74 Score=28.61 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=35.6
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchH-----HHH-------HHHhhcCCCceEEEEcC
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA-----KEI-------VKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a-----~el-------~~~~~~~~~d~IVvvGG 175 (302)
||.|++|+ |---.+ ..++.++..+|.....++++..-.-..|. .+. ..+....+||++|+-||
T Consensus 34 rplkI~IL-nlmp~k----~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGa 108 (301)
T 2vdj_A 34 RALKIAIL-NLMPTK----QETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGA 108 (301)
T ss_dssp CCEEEEEE-CCCSSH----HHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCC
T ss_pred CCceEEEE-eCCCCc----CchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCC
Confidence 67776655 432222 23567888999887766665333222222 111 12223467999999999
Q ss_pred C
Q 022147 176 D 176 (302)
Q Consensus 176 D 176 (302)
=
T Consensus 109 p 109 (301)
T 2vdj_A 109 P 109 (301)
T ss_dssp T
T ss_pred C
Confidence 6
No 366
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=29.26 E-value=52 Score=25.78 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=22.5
Q ss_pred eEEecCCChHHHHHHHHHHHhhhhcc
Q 022147 81 DFVFEPLSEDSKRLWCEKLRDFIDSF 106 (302)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~l~~~ 106 (302)
.+.|...|+++.+.|+.+|.......
T Consensus 87 ty~~~Adseee~~~WikAi~~A~~~~ 112 (126)
T 1wi1_A 87 TVIFASDDEQDRILWVQAMYRATGQS 112 (126)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred eEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 48899999999999999999887543
No 367
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=29.21 E-value=1.1e+02 Score=24.16 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=47.8
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhh----cCCCceEEEEc-CCchHHHHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD----LSKYDGIVCVS-GDGILVEVVN 184 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~----~~~~d~IVvvG-GDGTl~evvn 184 (302)
++..+++--..+.....+ ...+...|+..+..+++..-+.++|..+.++.+. ....+-|+++| --|..-...-
T Consensus 2 mptIl~lHGf~ss~~s~k--~~~l~~~~~~~~~~~~v~~pdl~~~g~~~~~~l~~~~~~~~~~~i~l~G~SmGG~~a~~~ 79 (202)
T 4fle_A 2 MSTLLYIHGFNSSPSSAK--ATTFKSWLQQHHPHIEMQIPQLPPYPAEAAEMLESIVMDKAGQSIGIVGSSLGGYFATWL 79 (202)
T ss_dssp -CEEEEECCTTCCTTCHH--HHHHHHHHHHHCTTSEEECCCCCSSHHHHHHHHHHHHHHHTTSCEEEEEETHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCCccH--HHHHHHHHHHcCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCcEEEEEEChhhHHHHHH
Confidence 444566654444333322 1456778888887777777777777655443322 22344455554 3554433222
Q ss_pred HHhcCccccccCCccEEEecCCChhhHHH
Q 022147 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
....+ .....+++..+...+..
T Consensus 80 -a~~~~------~~~~~~~~~~~~~~~~~ 101 (202)
T 4fle_A 80 -SQRFS------IPAVVVNPAVRPFELLS 101 (202)
T ss_dssp -HHHTT------CCEEEESCCSSHHHHGG
T ss_pred -HHHhc------ccchheeeccchHHHHH
Confidence 12222 33455556555544443
No 368
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=29.01 E-value=1.6e+02 Score=24.33 Aligned_cols=62 Identities=5% Similarity=0.118 Sum_probs=40.3
Q ss_pred cEEEEEEcCCC---CCCchh-------hhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 110 KRLYIFVNPFG---GKKIAS-------KIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 110 ~r~~vivNP~s---G~~~a~-------~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
++++||-=|.- |++... .-.++.++....+.|++++.+.+.+.++..+...+.. .++|+||+
T Consensus 29 M~IlVLNGPNLNlLG~REP~iYG~~TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~-~~~dgIII 100 (172)
T 3n8k_A 29 LIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAA-DAAEPVIL 100 (172)
T ss_dssp CEEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHH-HHTCCEEE
T ss_pred CEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh-hcCcEEEE
Confidence 57777776653 222221 1124556666667899999999999998887777654 34666663
No 369
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=28.91 E-value=1.8e+02 Score=21.68 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=25.8
Q ss_pred HHHHHhhcCCCceEEEE-cCC----chHHHHHHHHhcCccccccCCccEEEecC
Q 022147 157 EIVKVLDLSKYDGIVCV-SGD----GILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 157 el~~~~~~~~~d~IVvv-GGD----GTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
++.+.+ ..+-+++++. +|| |+..+++..+.+. .+++-+||+
T Consensus 71 ~i~~~~-~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~-------gi~v~viPG 116 (117)
T 3hh1_A 71 QVIELL-EEGSDVALVTDAGTPAISDPGYTMASAAHAA-------GLPVVPVPG 116 (117)
T ss_dssp HHHHHH-HTTCCEEEEEETTSCGGGSTTHHHHHHHHHT-------TCCEEEEC-
T ss_pred HHHHHH-HCCCeEEEEecCCcCeEeccHHHHHHHHHHC-------CCcEEEeCC
Confidence 344444 3466788888 898 4556666666543 678888885
No 370
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=28.83 E-value=1.8e+02 Score=21.73 Aligned_cols=88 Identities=14% Similarity=0.101 Sum_probs=48.2
Q ss_pred EecCCChHH--HHHHHHHHHhhhhcc-CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHH
Q 022147 83 VFEPLSEDS--KRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV 159 (302)
Q Consensus 83 ~~~~~~~~~--~~~w~~~l~~~l~~~-~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~ 159 (302)
.|....|.. |..-...+.+..... ....--++.+|.... . +.++..++..++.+.+. +...+...+++
T Consensus 39 ~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~----~----~~~~~~~~~~~~~~~~~-~d~~~~~~~~~ 109 (150)
T 3fw2_A 39 NFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVD----K----QQWKDAIKRDTLDWEQV-CDFGGLNSEVA 109 (150)
T ss_dssp EEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSC----H----HHHHHHHHHTTCCSEEE-CCSCGGGCHHH
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCC----H----HHHHHHHHHhCCCceEE-EcCcccchHHH
Confidence 344444444 554444555544433 222234455565321 1 34566777778877654 33333334667
Q ss_pred HHhhcCCCceEEEEcCCchH
Q 022147 160 KVLDLSKYDGIVCVSGDGIL 179 (302)
Q Consensus 160 ~~~~~~~~d~IVvvGGDGTl 179 (302)
+.+.....-..+++..||.+
T Consensus 110 ~~~~v~~~P~~~lid~~G~i 129 (150)
T 3fw2_A 110 KQYSIYKIPANILLSSDGKI 129 (150)
T ss_dssp HHTTCCSSSEEEEECTTSBE
T ss_pred HHcCCCccCeEEEECCCCEE
Confidence 77766667778888888863
No 371
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=28.58 E-value=1.1e+02 Score=22.83 Aligned_cols=57 Identities=12% Similarity=0.234 Sum_probs=33.9
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
.+++|++++.. +|-+.+. +...+++..|.+.|+++++....- .++.+ . ..++|.|+.
T Consensus 19 ~~~kkIlvvC~--sG~gTS~-ll~~kl~~~~~~~gi~~~V~~~~~-~~~~~---~--~~~~DlIis 75 (113)
T 1tvm_A 19 GSKRKIIVACG--GAVATST-MAAEEIKELCQSHNIPVELIQCRV-NEIET---Y--MDGVHLICT 75 (113)
T ss_dssp CSSEEEEEESC--SCSSHHH-HHHHHHHHHHHHTTCCEEEEEECT-TTTTT---S--TTSCSEEEE
T ss_pred ccccEEEEECC--CCHHHHH-HHHHHHHHHHHHcCCeEEEEEecH-HHHhh---c--cCCCCEEEE
Confidence 45667777654 3544443 346799999999999876554432 22211 1 246886553
No 372
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=28.50 E-value=1.5e+02 Score=24.40 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=32.0
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
..++++.|+- ..| .+ ..+...|+.+|+++.++ ...+ ++ .++|.||+-||..+..+
T Consensus 18 ~~~~~I~ii~--~~~------~~-~~~~~~l~~~g~~~~~~--~~~~-------~l--~~~d~iil~GG~~~~~~ 72 (208)
T 2iss_D 18 GSHMKIGVLG--VQG------DV-REHVEALHKLGVETLIV--KLPE-------QL--DMVDGLILPGGESTTMI 72 (208)
T ss_dssp --CCEEEEEC--SSS------CH-HHHHHHHHHTTCEEEEE--CSGG-------GG--GGCSEEEECSSCHHHHH
T ss_pred CCCcEEEEEE--CCC------ch-HHHHHHHHHCCCEEEEe--CChH-------HH--hhCCEEEECCCcHHHHH
Confidence 4556788882 333 23 23445667788766554 3322 12 36999999999766553
No 373
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=28.25 E-value=51 Score=24.53 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=32.4
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ 152 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~ 152 (302)
-+++.|.+++.+|..++.+-|-..--|-|+..+..+.+...+..
T Consensus 19 lk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~ 62 (102)
T 1s3a_A 19 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECS 62 (102)
T ss_dssp EEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCC
T ss_pred eeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEECC
Confidence 36899999999998777555555666778888777776665554
No 374
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=28.16 E-value=2.2e+02 Score=22.44 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=34.0
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~e 157 (302)
+|+..|.|+++|-|+.. ..-.+...|...|.++-++..+..+....
T Consensus 1 M~vi~v~s~kgG~GKTt--~a~~la~~la~~g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTT--AVINIATALSRSGYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp CEEEEECCSSTTSSHHH--HHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred CeEEEEEeCCCCccHHH--HHHHHHHHHHHCCCeEEEEECCCCCCHHH
Confidence 47888999999999875 23467778888888887777766555444
No 375
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=27.99 E-value=1.3e+02 Score=25.60 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEE
Q 022147 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (302)
Q Consensus 155 a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgi 202 (302)
|+++.+.+...++ .||.-||-|.--.+..+.++.. ...+|+
T Consensus 58 A~~lg~~La~~g~-~lVsGGg~GiM~aa~~gAl~~g------G~~iGV 98 (217)
T 1wek_A 58 GYRLGRALAEAGF-GVVTGGGPGVMEAVNRGAYEAG------GVSVGL 98 (217)
T ss_dssp HHHHHHHHHHHTC-EEEECSCSHHHHHHHHHHHHTT------CCEEEE
T ss_pred HHHHHHHHHHCCC-EEEeCChhhHHHHHHHHHHHcC------CCEEEE
Confidence 4556666654443 5777778777777777776653 567777
No 376
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=27.88 E-value=1.2e+02 Score=26.90 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=37.2
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC------cchHHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~------~~~a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
.-+++.+|+|-.-| .. .. +.+...+++.|..+....... ..+...+..++...+.|.|++.+-......
T Consensus 120 gw~~vaii~d~~~g--~~--~~-~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~ 194 (376)
T 3hsy_A 120 QWDKFAYLYDSDRG--LS--TL-QAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVND 194 (376)
T ss_dssp TCCEEEEEECSTTC--SH--HH-HHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHH
T ss_pred CCCEEEEEEeCchh--HH--HH-HHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHH
Confidence 45789999963333 22 22 466777888888765544322 223444555665567888887766555566
Q ss_pred HHHHHhc
Q 022147 182 VVNGLLE 188 (302)
Q Consensus 182 vvngL~~ 188 (302)
++..+.+
T Consensus 195 ~~~qa~~ 201 (376)
T 3hsy_A 195 IVDQVIT 201 (376)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 377
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=27.85 E-value=94 Score=27.68 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=28.9
Q ss_pred CCcEEEEEEcCCCC--CCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q 022147 108 RPKRLYIFVNPFGG--KKIASKIFLDDVKPLLEDANIQFTVQETTQQL 153 (302)
Q Consensus 108 r~~r~~vivNP~sG--~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~ 153 (302)
|+||++++.+-... .|-+.... ..+...|.+.|++++++.+....
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~-~~la~~L~~~G~~V~v~~~~~~~ 47 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEAL-TAISEALASLGHEVLVFTPSHGR 47 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHH-HHHHHHHHHTTCEEEEEEECTTC
T ss_pred CceEEEEEecccCCcccCCHHHHH-HHHHHHHHHCCCeEEEEecCCCC
Confidence 57898888743221 22222223 57888899999999988755433
No 378
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=27.84 E-value=1.4e+02 Score=24.06 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
++.++......|++++.+.+.+.++..+...+.. .++|+||+
T Consensus 35 ~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~-~~~dgiiI 76 (151)
T 3u80_A 35 RKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAA-DEKTPVVM 76 (151)
T ss_dssp HHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHH-HHTCCEEE
T ss_pred HHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh-hcCcEEEE
Confidence 3455556666889999999999988887777654 34666664
No 379
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=27.83 E-value=2.6e+02 Score=23.07 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=54.3
Q ss_pred CcEEEEEEcCC-CC--CCchh-hhHHHHHHHHHHhcCCcEE---EEEeC-CcchHHHHHHHhhcC--CCceEEEEcCCch
Q 022147 109 PKRLYIFVNPF-GG--KKIAS-KIFLDDVKPLLEDANIQFT---VQETT-QQLHAKEIVKVLDLS--KYDGIVCVSGDGI 178 (302)
Q Consensus 109 ~~r~~vivNP~-sG--~~~a~-~~~~~~v~~~L~~ag~~~~---v~~T~-~~~~a~el~~~~~~~--~~d~IVvvGGDGT 178 (302)
.+|+.+|..+. .- ..... ..+ +-+...++++|+++. +...+ ....+.+.++++... .+|+|+ +..|..
T Consensus 114 ~~~i~~i~~~~~~~~~~~~~~~~R~-~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~ 191 (276)
T 2h0a_A 114 GPIFAIAVEEEPDRAFRRTVFAERM-AGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQV 191 (276)
T ss_dssp SCEEEEEECCSCCC---CCHHHHHH-HHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHH
T ss_pred CCeEEEEecCcccccccchhHHHHH-HHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHH
Confidence 46888887664 20 22222 333 466777888887543 33333 344556666665432 366665 778998
Q ss_pred HHHHHHHHhcCccccccCCcc--EEEecCCC
Q 022147 179 LVEVVNGLLEREDWNDAIKVP--LGVVPAGT 207 (302)
Q Consensus 179 l~evvngL~~~~~~~~~~~~p--lgiIP~GT 207 (302)
...+++.+.+.. .++| +.++-.+.
T Consensus 192 a~g~~~al~~~g-----~~vP~di~vvg~d~ 217 (276)
T 2h0a_A 192 ALGVLEEAVRLG-----LTPGRDVRVLGFDG 217 (276)
T ss_dssp HHHHHHHHHTTS-----CTTTTSEEEEEESC
T ss_pred HHHHHHHHHHcC-----CCCCCCeEEEEeCC
Confidence 889999997763 2333 66665543
No 380
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=27.56 E-value=3.3e+02 Score=24.26 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=46.1
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC------CchHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG------DGILVE 181 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG------DGTl~e 181 (302)
+.+++++++-. ..+..+++. +.+...+.+.|++++++.-... ...++..++. .+|.||++.- -+.+-.
T Consensus 255 ~~~k~~i~~~S--~~gnT~~la-~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~l~--~~d~iiigsP~y~~~~~~~~k~ 328 (404)
T 2ohh_A 255 VDERVTVIYDT--MHGSTRKMA-HAIAEGAMSEGVDVRVYCLHED-DRSEIVKDIL--ESGAIALGAPTIYDEPYPSVGD 328 (404)
T ss_dssp CCSEEEEEECC--SSSHHHHHH-HHHHHHHHTTTCEEEEEETTTS-CHHHHHHHHH--TCSEEEEECCEETTEECTHHHH
T ss_pred CCCcEEEEEEC--CChHHHHHH-HHHHHHHHhCCCeEEEEECCCC-CHHHHHHHHH--HCCEEEEECccccccchHHHHH
Confidence 45677777744 445666554 6788888888888877655432 3344555554 6898888743 234555
Q ss_pred HHHHHh
Q 022147 182 VVNGLL 187 (302)
Q Consensus 182 vvngL~ 187 (302)
++..+.
T Consensus 329 ~ld~l~ 334 (404)
T 2ohh_A 329 LLMYLR 334 (404)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 665553
No 381
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=27.44 E-value=1.6e+02 Score=23.47 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=46.2
Q ss_pred EEEEEE-cCCCCCCchhhhHHHHHHHHHHhc------CCcEEEEEeCC------------------------cchHHHHH
Q 022147 111 RLYIFV-NPFGGKKIASKIFLDDVKPLLEDA------NIQFTVQETTQ------------------------QLHAKEIV 159 (302)
Q Consensus 111 r~~viv-NP~sG~~~a~~~~~~~v~~~L~~a------g~~~~v~~T~~------------------------~~~a~el~ 159 (302)
|+++|+ .|+.+ +...++. +.+...++++ |.+++++.-.. .++..++.
T Consensus 2 kilii~gS~r~~-~~t~~la-~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (191)
T 1t0i_A 2 KVGIIMGSVRAK-RVCPEIA-AYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWS 79 (191)
T ss_dssp EEEEEECCCCSS-CSHHHHH-HHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHH
T ss_pred eEEEEeCCCCCC-CchHHHH-HHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHH
Confidence 555555 55533 4445444 5677777765 56666554221 11233455
Q ss_pred HHhhcCCCceEEEEcC--CchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 160 KVLDLSKYDGIVCVSG--DGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 160 ~~~~~~~~d~IVvvGG--DGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
+++. .+|.||++.= -|++...+..++++-.. .....|++++-.
T Consensus 80 ~~l~--~aD~iI~~sP~y~~~~p~~lK~~iD~~~~-~l~gK~~~~~~~ 124 (191)
T 1t0i_A 80 RIVN--ALDIIVFVTPQYNWGYPAALKNAIDRLYH-EWHGKPALVVSY 124 (191)
T ss_dssp HHHH--TCSEEEEEEECBTTBCCHHHHHHHHTCST-TTTTCEEEEEEE
T ss_pred HHHH--hCCEEEEEeceECCCCCHHHHHHHHHHHh-hcCCCEEEEEEe
Confidence 5554 6888887652 34455555555554211 112445666643
No 382
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=27.41 E-value=3e+02 Score=23.79 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCCCCCchh-hhHHHHHHHHHHhcC------CcEEEEEeCC-cchHHHHHHHhhcC-CCceEEEEcCCchH
Q 022147 109 PKRLYIFVNPFGGKKIAS-KIFLDDVKPLLEDAN------IQFTVQETTQ-QLHAKEIVKVLDLS-KYDGIVCVSGDGIL 179 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~-~~~~~~v~~~L~~ag------~~~~v~~T~~-~~~a~el~~~~~~~-~~d~IVvvGGDGTl 179 (302)
|.++ =++-|.+|..... .-+.+-++-.++..+ +++.+.-++. +..+.+.++++... +.++||...+..+.
T Consensus 16 ~~~i-G~~~plsG~~a~~g~~~~~g~~~a~~~in~i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~s~~~ 94 (366)
T 3td9_A 16 VVKI-AVILPMTGGISAFGRMVWEGIQIAHEEKPTVLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASAHS 94 (366)
T ss_dssp CEEE-EEEECCSSTTHHHHHHHHHHHHHHHHHCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHHHH
T ss_pred eEEE-EEEECCcCcchhcCHHHHHHHHHHHHHhhhcCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCCchhH
Confidence 4444 4566788875431 112234455555555 4444444443 34455666666544 37776643344444
Q ss_pred HHHHHHHhcCccccccCCccEEEecCCChhhH
Q 022147 180 VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGM 211 (302)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiIP~GTgN~~ 211 (302)
..+...+... ++|+. .|..+...+
T Consensus 95 ~~~~~~~~~~-------~iP~i-~~~~~~~~~ 118 (366)
T 3td9_A 95 LAIAPIAEEN-------KVPMV-TPASTNPLV 118 (366)
T ss_dssp HHHHHHHHHT-------TCCEE-ESSCCCGGG
T ss_pred HHHHHHHHhC-------CCeEE-ecCCCCccc
Confidence 4555544333 56763 344443333
No 383
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=27.38 E-value=39 Score=34.31 Aligned_cols=93 Identities=11% Similarity=0.137 Sum_probs=53.3
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc----hHHHH-----HHHhhcCCCceEEEEcCC-ch-
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL----HAKEI-----VKVLDLSKYDGIVCVSGD-GI- 178 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~----~a~el-----~~~~~~~~~d~IVvvGGD-GT- 178 (302)
+++.|++-+ |- ....+ ......|+.+|++++++-.+... +...+ ..++....||+||+.||. +.
T Consensus 535 rkVaILl~d--Gf-e~~El--~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~ 609 (715)
T 1sy7_A 535 RRVAIIIAD--GY-DNVAY--DAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAE 609 (715)
T ss_dssp CEEEEECCT--TB-CHHHH--HHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHH
T ss_pred CEEEEEEcC--CC-CHHHH--HHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHh
Confidence 578888875 22 22222 24567788999888876543210 00000 011122358999999994 32
Q ss_pred -------HHHHHHHHhcCccccccCCccEEEecCCChhhHHHhh
Q 022147 179 -------LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (302)
Q Consensus 179 -------l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL 215 (302)
+.+.+.....+ ..+|+.|-.|. -.+|..+
T Consensus 610 ~l~~~~~l~~~Lr~~~~~-------gK~IaAIC~G~-~lLA~Al 645 (715)
T 1sy7_A 610 TLSKNGRALHWIREAFGH-------LKAIGATGEAV-DLVAKAI 645 (715)
T ss_dssp HHHTCHHHHHHHHHHHHT-------TCEEEEETTHH-HHHHHHH
T ss_pred hhccCHHHHHHHHHHHhC-------CCEEEEECHHH-HHHHHcc
Confidence 33444444443 67899998887 3566654
No 384
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=27.37 E-value=1.6e+02 Score=25.37 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=53.3
Q ss_pred CCcEEEEEE-cCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCC----------cchHHHHHHHhhcCCCceEEEEc--
Q 022147 108 RPKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVCVS-- 174 (302)
Q Consensus 108 r~~r~~viv-NP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~----------~~~a~el~~~~~~~~~d~IVvvG-- 174 (302)
.++|+++|+ .|..+ +...++. +.+...++..|++++++.-.. +.+..++.+++. ..|+||++.
T Consensus 33 ~~mkIliI~GS~r~~-s~t~~La-~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~--~AD~iI~~sP~ 108 (247)
T 2q62_A 33 HRPRILILYGSLRTV-SYSRLLA-EEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSI--WSEGQVWVSPE 108 (247)
T ss_dssp SCCEEEEEECCCCSS-CHHHHHH-HHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHH--HCSEEEEEEEC
T ss_pred CCCeEEEEEccCCCC-CHHHHHH-HHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHH--HCCEEEEEeCC
Confidence 456777666 45433 3444444 567777888888877654322 123556666664 478888775
Q ss_pred CCchHHHHHHHHhcCccc-----cccCCccEEEecCC
Q 022147 175 GDGILVEVVNGLLEREDW-----NDAIKVPLGVVPAG 206 (302)
Q Consensus 175 GDGTl~evvngL~~~~~~-----~~~~~~plgiIP~G 206 (302)
=-|++.-.+..++.+-.. ......|.+++-.+
T Consensus 109 Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ts 145 (247)
T 2q62_A 109 RHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVS 145 (247)
T ss_dssp SSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEEC
T ss_pred CCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeC
Confidence 245555566555554211 11234566666654
No 385
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=27.11 E-value=44 Score=31.01 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=51.9
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc-----hHH-HH-----HHHhhcCCCceEEEEcC
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-----HAK-EI-----VKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~-----~a~-el-----~~~~~~~~~d~IVvvGG 175 (302)
..++++.|++-| |- ....+ ......|+.+|++++++-.+... +.. .+ ..++....||.|++.||
T Consensus 8 ~~mkkV~ILl~d--gf-~~~El--~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG 82 (365)
T 3fse_A 8 SGKKKVAILIEQ--AV-EDTEF--IIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGG 82 (365)
T ss_dssp ---CEEEEECCT--TB-CHHHH--HHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCB
T ss_pred CCceEEEEEECC--CC-cHHHH--HHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECC
Confidence 356788888876 22 22222 24557788889888776543211 000 01 11122235999999999
Q ss_pred CchHH--------HHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 176 DGILV--------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 176 DGTl~--------evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
.|+-. +.+.....+ ..+|+-|=.|+ -.+|.+
T Consensus 83 ~g~~~l~~~~~l~~~Lr~~~~~-------gk~IaAIC~G~-~lLA~A 121 (365)
T 3fse_A 83 MAPDKMRRNPNTVRFVQEAMEQ-------GKLVAAVCHGP-QVLIEG 121 (365)
T ss_dssp THHHHHTTCHHHHHHHHHHHHT-------TCEEEEETTTH-HHHHHT
T ss_pred cchhhccCCHHHHHHHHHHHHC-------CCEEEEECHHH-HHHHHc
Confidence 87642 223333322 67899888887 445543
No 386
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=27.07 E-value=1.1e+02 Score=26.34 Aligned_cols=35 Identities=0% Similarity=-0.040 Sum_probs=20.9
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE
Q 022147 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE 148 (302)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~ 148 (302)
.+|.|-++ ...-..+..+.++..|+..|+++.-+-
T Consensus 6 IaigsDha-~~lK~~~i~~~l~~~L~~~G~eV~D~G 40 (214)
T 3ono_A 6 IALMMENS-QAAKNAMVAGELNSVAGGLGHDVFNVG 40 (214)
T ss_dssp EEECCCGG-GGGGHHHHHHHHHHHHHHTTCEEEECS
T ss_pred EEEECCCc-HHHHChhHHHHHHHHHHHCCCEEEEcC
Confidence 44556666 222112333589999999998775443
No 387
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=26.91 E-value=1.8e+02 Score=21.06 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE----cCCchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV----SGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv----GGDGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
...++.+|+..|+. +....+..+|.+..++ ..+|.|++- +.|| .+++..|...+. ...+|+.++..
T Consensus 19 ~~~l~~~l~~~g~~--v~~~~~~~~a~~~l~~---~~~dlvi~d~~l~~~~g--~~~~~~l~~~~~---~~~~~ii~~s~ 88 (140)
T 3grc_A 19 ARLLNLMLEKGGFD--SDMVHSAAQALEQVAR---RPYAAMTVDLNLPDQDG--VSLIRALRRDSR---TRDLAIVVVSA 88 (140)
T ss_dssp HHHHHHHHHHTTCE--EEEECSHHHHHHHHHH---SCCSEEEECSCCSSSCH--HHHHHHHHTSGG---GTTCEEEEECT
T ss_pred HHHHHHHHHHCCCe--EEEECCHHHHHHHHHh---CCCCEEEEeCCCCCCCH--HHHHHHHHhCcc---cCCCCEEEEec
Confidence 35778888887765 4555666666655543 568987773 4455 577887765321 23678777765
Q ss_pred CC
Q 022147 206 GT 207 (302)
Q Consensus 206 GT 207 (302)
..
T Consensus 89 ~~ 90 (140)
T 3grc_A 89 NA 90 (140)
T ss_dssp TH
T ss_pred CC
Confidence 44
No 388
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=26.89 E-value=1.3e+02 Score=25.98 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=29.3
Q ss_pred CCCceEEEEcCC----chHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 165 SKYDGIVCVSGD----GILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 165 ~~~d~IVvvGGD----GTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
.+-+++++.+|| |+..+++..+... .+++=+||+=|.=..|.
T Consensus 75 ~G~~Va~L~~GDP~iyg~~~~l~~~l~~~-------gi~veviPGiSs~~aaa 120 (264)
T 3ndc_A 75 AGQDVARLHSGDLSIWSAMGEQLRRLRAL-------NIPYDVTPGVPSFAAAA 120 (264)
T ss_dssp HTCCEEEEESBCTTSSCSHHHHHHHHHHT-------TCCEEEECCCCHHHHHH
T ss_pred CCCeEEEEeCCCCccccHHHHHHHHHHhC-------CCCEEEeCCHHHHHHHH
Confidence 456788888999 6667777777543 67888888866543333
No 389
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=26.72 E-value=1.1e+02 Score=24.57 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=34.3
Q ss_pred HHHHHHHhc-----CCcEEE--EEeCCcchHHHHHHHhhc-CCCceEEEEcCCch-----HHHHHHHHhcC
Q 022147 132 DVKPLLEDA-----NIQFTV--QETTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI-----LVEVVNGLLER 189 (302)
Q Consensus 132 ~v~~~L~~a-----g~~~~v--~~T~~~~~a~el~~~~~~-~~~d~IVvvGGDGT-----l~evvngL~~~ 189 (302)
.+..+|+.. |+++.. +..+..+...+..+++.. .++|.||+.||=|- ..|++..+.++
T Consensus 29 ~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~~a~~~~~~~ 99 (167)
T 1uuy_A 29 RAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATKKVIER 99 (167)
T ss_dssp HHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHHCSE
T ss_pred HHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCchHHHHHHHhcC
Confidence 455667666 775532 333444444444444432 47999999998653 56666666543
No 390
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=26.65 E-value=1.9e+02 Score=25.90 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=20.3
Q ss_pred CceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCC
Q 022147 167 YDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 167 ~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
.|.+|+-+|=+|+.|++- ..+|..++|..
T Consensus 253 aDlvI~raG~~Tv~E~~a-----------~G~P~Ilip~p 281 (365)
T 3s2u_A 253 ADLVICRAGALTVSELTA-----------AGLPAFLVPLP 281 (365)
T ss_dssp CSEEEECCCHHHHHHHHH-----------HTCCEEECC--
T ss_pred ceEEEecCCcchHHHHHH-----------hCCCeEEeccC
Confidence 578888899899888753 25677777753
No 391
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=26.46 E-value=2.3e+02 Score=24.35 Aligned_cols=69 Identities=12% Similarity=0.042 Sum_probs=40.4
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcC-CcEEEEEeCCcchHHHHHH----HhhcCCCceEE-EEcCCchH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDAN-IQFTVQETTQQLHAKEIVK----VLDLSKYDGIV-CVSGDGIL 179 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag-~~~~v~~T~~~~~a~el~~----~~~~~~~d~IV-vvGGDGTl 179 (302)
...+++++. |.....++.+.+ +.++.++...| +++++...+.. +..+.+. .+.....+.+| +.||-.++
T Consensus 33 ~~d~ViLv~-~~~~~~~~~~A~-~~i~~~l~~~~~i~~e~~~vd~~-df~~~v~~i~~~i~~~~~~iivnlsGG~Ril 107 (244)
T 2wte_A 33 KEDSLVIVV-PSPIVSGTRAAI-ESLRAQISRLNYPPPRIYEIEIT-DFNLALSKILDIILTLPEPIISDLTMGMRMI 107 (244)
T ss_dssp TTSEEEEEE-ESSCCHHHHHHH-HHHHHHHHHHTCCCEEEEEECCC-SHHHHHHHHHHHHTTSCSSEEEECSSSCHHH
T ss_pred CCCEEEEEe-CCCcchhHHHHH-HHHHHHHHHcCCCceEEEEECCc-cHHHHHHHHHHHHhhcCCcEEEEecCCchHH
Confidence 445555544 444444555545 68888998886 48888877653 3433333 23222226666 67888765
No 392
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=26.46 E-value=1.8e+02 Score=23.50 Aligned_cols=98 Identities=11% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCc---EEEEEeCCcchHHHHHHHhh-cCCCceEEEEc----CCch
Q 022147 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLD-LSKYDGIVCVS----GDGI 178 (302)
Q Consensus 107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~---~~v~~T~~~~~a~el~~~~~-~~~~d~IVvvG----GDGT 178 (302)
..+.|+.|+.-.+... -..+.. +-....|...|+. ++++.....-+..-.++.+. ..+||.||++| |+-.
T Consensus 9 ~~~~ri~IV~arfn~~-I~~~Ll-~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~ 86 (157)
T 2obx_A 9 YETVRIAVVRARWHAD-IVDQCV-SAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIY 86 (157)
T ss_dssp CCCEEEEEEEECTTHH-HHHHHH-HHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEEEEECCCCSSB
T ss_pred CCCCEEEEEEeeCcHH-HHHHHH-HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCc
Confidence 3556888888654432 122333 3455667777753 56666666666665666654 36799999998 4432
Q ss_pred -----HHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 179 -----LVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 179 -----l~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
-+++..||++-.- +...++-.|+|-..+
T Consensus 87 Hfd~Va~~vs~Gl~~v~L-~~~vPV~~GVLT~~~ 119 (157)
T 2obx_A 87 RHEFVASAVIDGMMNVQL-STGVPVLSAVLTPHN 119 (157)
T ss_dssp CCHHHHHHHHHHHHHHHH-HHCCCEEEEEECBSC
T ss_pred HHHHHHHHHHHHHHHHHh-hcCCCEEEEecCCCC
Confidence 5677778865321 112345556666654
No 393
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=26.28 E-value=1.3e+02 Score=24.46 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=32.3
Q ss_pred HHHHHHHH---hcCCcEEE-EEeCCcchHHHHHHHhhc-CCCceEEEEcCCch-----HHHHHHHHh
Q 022147 131 DDVKPLLE---DANIQFTV-QETTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI-----LVEVVNGLL 187 (302)
Q Consensus 131 ~~v~~~L~---~ag~~~~v-~~T~~~~~a~el~~~~~~-~~~d~IVvvGGDGT-----l~evvngL~ 187 (302)
..+..+|+ +.|+++.. +..+..+...+..+++.. .++|.||+.||=|. ..|++..+.
T Consensus 28 ~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~~~ 94 (178)
T 2pbq_A 28 KAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAPRDVTPEATEAVC 94 (178)
T ss_dssp HHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCchHHHHHHHh
Confidence 35677777 78887632 222333334444444433 27999999999542 344554443
No 394
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=26.06 E-value=37 Score=27.97 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=33.4
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCch
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
+++++|+.++.+- .. + .+...|+.+|.++.++... + +...+|+||+.||-++
T Consensus 2 ~~~i~il~~~~~~---~~--~--~~~~~l~~~g~~~~~~~~~----------~-~~~~~d~lil~Gg~~~ 53 (213)
T 3d54_D 2 KPRACVVVYPGSN---CD--R--DAYHALEINGFEPSYVGLD----------D-KLDDYELIILPGGFSY 53 (213)
T ss_dssp CCEEEEECCTTEE---EH--H--HHHHHHHTTTCEEEEECTT----------C-CCSSCSEEEECEECGG
T ss_pred CcEEEEEEcCCCC---cc--H--HHHHHHHHCCCEEEEEecC----------C-CcccCCEEEECCCCch
Confidence 4688888876321 10 1 3467788888877655321 1 2457999999998653
No 395
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=25.87 E-value=1.8e+02 Score=23.34 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
++.++......|++++.+.+.+.++..+...+.. .++|+||+
T Consensus 31 ~~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~-~~~dgiii 72 (143)
T 1gqo_A 31 ETDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAE-EQYSGIVL 72 (143)
T ss_dssp HHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHT-TTCSEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhh-hcCcEEEE
Confidence 4566666777899999999999998888777764 35777764
No 396
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=25.87 E-value=2.1e+02 Score=21.37 Aligned_cols=87 Identities=7% Similarity=-0.004 Sum_probs=50.2
Q ss_pred EEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHH
Q 022147 82 FVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV 161 (302)
Q Consensus 82 ~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~ 161 (302)
+.|....|..|..-...+.+.........-.++.+|.-. . +.++..++..++.+.+..- ......++++.
T Consensus 29 v~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~-----~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 98 (151)
T 3raz_A 29 VNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDT-----S----DNIGNFLKQTPVSYPIWRY-TGANSRNFMKT 98 (151)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSC-----H----HHHHHHHHHSCCSSCEEEE-CCSCHHHHHHT
T ss_pred EEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCC-----h----HHHHHHHHHcCCCCceEec-CccchHHHHHH
Confidence 345555566676666666665544433344556667621 1 3556777777877665442 33445566666
Q ss_pred hh--cCCCceEEEEcCCch
Q 022147 162 LD--LSKYDGIVCVSGDGI 178 (302)
Q Consensus 162 ~~--~~~~d~IVvvGGDGT 178 (302)
+. ...+-..+++..||.
T Consensus 99 ~~~~v~~~P~~~lid~~G~ 117 (151)
T 3raz_A 99 YGNTVGVLPFTVVEAPKCG 117 (151)
T ss_dssp TTCCSCCSSEEEEEETTTT
T ss_pred hCCccCCCCEEEEECCCCc
Confidence 64 445556777777774
No 397
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=25.83 E-value=1.3e+02 Score=24.01 Aligned_cols=77 Identities=10% Similarity=0.173 Sum_probs=42.5
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHh-cCCcEEEEEeCCcchHHHHH-------------HHhhcCCCceEEEEc
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQETTQQLHAKEIV-------------KVLDLSKYDGIVCVS 174 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~-ag~~~~v~~T~~~~~a~el~-------------~~~~~~~~d~IVvvG 174 (302)
++++++|+-.. .+...++. +.+...++. .|++++++.-... ....+. ...+...+|.||++.
T Consensus 1 Mmkilii~~S~--~g~t~~la-~~i~~~l~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs 76 (198)
T 3b6i_A 1 MAKVLVLYYSM--YGHIETMA-RAVAEGASKVDGAEVVVKRVPET-MPPQLFEKAGGKTQTAPVATPQELADYDAIIFGT 76 (198)
T ss_dssp -CEEEEEECCS--SSHHHHHH-HHHHHHHHTSTTCEEEEEECCCC-SCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEE
T ss_pred CCeEEEEEeCC--CcHHHHHH-HHHHHHHhhcCCCEEEEEEcccc-CchhhhhhcccccccCchhhHHHHHHCCEEEEEe
Confidence 35777777543 44555554 677888887 8888877665432 111110 011234688877764
Q ss_pred C--CchHHHHHHHHhcC
Q 022147 175 G--DGILVEVVNGLLER 189 (302)
Q Consensus 175 G--DGTl~evvngL~~~ 189 (302)
- .|.+...+..++++
T Consensus 77 P~y~~~~~~~lk~~ld~ 93 (198)
T 3b6i_A 77 PTRFGNMSGQMRTFLDQ 93 (198)
T ss_dssp EEETTEECHHHHHHHTT
T ss_pred ChhcCCchHHHHHHHHH
Confidence 2 44555555555554
No 398
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=25.58 E-value=2e+02 Score=27.01 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV 146 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v 146 (302)
.+.|.+.+.+.++..-+.+. -|+++|..|.+.. .+..+|++.|+++..
T Consensus 154 ~~~Y~~~l~~~~~~~i~~~~-kivvD~~nG~~~~------~~~~ll~~lG~~v~~ 201 (443)
T 3i3w_A 154 IDEYIESIYSRFAKFVNYKG-KVVVDCAHGAASH------NFEALLDKFGINYVS 201 (443)
T ss_dssp THHHHHHHHHHHTTTCCCCS-EEEEECTTSTTTT------HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCchhhccCC-eEEEECCCChHHH------HHHHHHHHcCCEEEE
Confidence 34577777776653212345 7899997765432 245677778876653
No 399
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=25.49 E-value=1.9e+02 Score=21.83 Aligned_cols=83 Identities=13% Similarity=0.060 Sum_probs=45.9
Q ss_pred eEEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHH
Q 022147 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (302)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~ 160 (302)
-+.|....|..|......+.+.........-.++-+|... .. +..++..++.+.+..... .++++
T Consensus 45 ll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~---~~--------~~~~~~~~~~~~~~~d~~----~~~~~ 109 (158)
T 3hdc_A 45 LVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK---RF--------PEKYRRAPVSFNFLSDAT----GQVQQ 109 (158)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS---SC--------CGGGGGCCCSCEEEECTT----SHHHH
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH---HH--------HHHHHHcCCCceEEECch----HHHHH
Confidence 3445556677777766666666555443334445556544 11 122344566666554332 24556
Q ss_pred HhhcCCCceEEEEcCCch
Q 022147 161 VLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 161 ~~~~~~~d~IVvvGGDGT 178 (302)
.+....+-.++++..||.
T Consensus 110 ~~~v~~~P~~~lid~~G~ 127 (158)
T 3hdc_A 110 RYGANRLPDTFIVDRKGI 127 (158)
T ss_dssp HTTCCSSSEEEEECTTSB
T ss_pred HhCCCCcceEEEEcCCCC
Confidence 665556667777777775
No 400
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=25.43 E-value=3e+02 Score=23.06 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=47.7
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE---EEEeC-CcchHHHHHHHhhc--CCCceEEEEcCCchHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT---VQETT-QQLHAKEIVKVLDL--SKYDGIVCVSGDGILVEV 182 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~---v~~T~-~~~~a~el~~~~~~--~~~d~IVvvGGDGTl~ev 182 (302)
.+++.+|..|..+.......+ +-++..|+++|+++. +.... ..+.+.+.++++.. ..+|+|+ +..|.+...+
T Consensus 133 ~~~I~~i~~~~~~~~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~ 210 (289)
T 2fep_A 133 HTDIAFVSGPMAEPINRSKKL-QGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGI 210 (289)
T ss_dssp CSSEEEEESCTTSHHHHTTHH-HHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHH
T ss_pred CCeEEEEeCCccccccHHHHH-HHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHH
Confidence 578888876641222222233 456677888887643 33333 34455666666543 2466655 5788888888
Q ss_pred HHHHhcC
Q 022147 183 VNGLLER 189 (302)
Q Consensus 183 vngL~~~ 189 (302)
++.|.+.
T Consensus 211 ~~al~~~ 217 (289)
T 2fep_A 211 IHAAQDQ 217 (289)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9988765
No 401
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=25.41 E-value=3.6e+02 Score=23.96 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhhc----cCC-CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe---CCcchHHHHHHHh
Q 022147 91 SKRLWCEKLRDFIDS----FGR-PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVL 162 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~----~~r-~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T---~~~~~a~el~~~~ 162 (302)
.+++..+.+++.+.. ..+ |.=..|++ |...+.+.|.+.-...+++.|+.++.+.- .+.++..+..+++
T Consensus 13 ia~~i~~~~~~~v~~l~~~~~~~P~Lavilv----g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~l 88 (286)
T 4a5o_A 13 IAANLRQQIAQRVTERRQQGLRVPGLAVILV----GTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRL 88 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEEEEE----SCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceEEEEEe----CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444555555544321 133 44334444 45556667877888899999998876653 3444555666666
Q ss_pred hcC-CCceEEE
Q 022147 163 DLS-KYDGIVC 172 (302)
Q Consensus 163 ~~~-~~d~IVv 172 (302)
..+ ..++|++
T Consensus 89 N~d~~v~GIlV 99 (286)
T 4a5o_A 89 NDDPAIDGILV 99 (286)
T ss_dssp HTCTTCCEEEE
T ss_pred hCCCCCCEEEE
Confidence 543 4566554
No 402
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=25.23 E-value=2.6e+02 Score=22.19 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
..+..+|+.+|+++.. ....-...++++.+...++|.|.+..=+++-.+
T Consensus 36 ~~va~~l~~~G~eVi~--lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~ 84 (161)
T 2yxb_A 36 KVVARALRDAGFEVVY--TGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLH 84 (161)
T ss_dssp HHHHHHHHHTTCEEEC--CCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHH
T ss_pred HHHHHHHHHCCCEEEE--CCCCCCHHHHHHHHHhcCCCEEEEEeechhhHH
Confidence 4678889999986643 332234456666666678998888887766333
No 403
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.18 E-value=48 Score=26.45 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=21.8
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+++.|...++++.+.|+++|+..+.
T Consensus 89 r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 89 EEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 4678999999999999999988764
No 404
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=25.04 E-value=1.8e+02 Score=23.69 Aligned_cols=43 Identities=9% Similarity=-0.031 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv 173 (302)
++.++......|++++.+.+.+.++..+...+... ++|+||+-
T Consensus 37 ~~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~-~~dgiIIN 79 (156)
T 1gtz_A 37 EALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARL-NHCGIVIN 79 (156)
T ss_dssp HHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHH-HCSEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhh-cCcEEEEC
Confidence 45566666778999999999999988887776643 47777643
No 405
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=25.00 E-value=1.4e+02 Score=24.66 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=34.7
Q ss_pred HHHHHHHHh---cCCcEEE--EEeCCcchHHHHHHHhhc-CCCceEEEEcCCch-----HHHHHHHHhc
Q 022147 131 DDVKPLLED---ANIQFTV--QETTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI-----LVEVVNGLLE 188 (302)
Q Consensus 131 ~~v~~~L~~---ag~~~~v--~~T~~~~~a~el~~~~~~-~~~d~IVvvGGDGT-----l~evvngL~~ 188 (302)
..+...|++ .|+++.. ...+..+...+..+++.. .++|.||+.||=|. .-|++..+..
T Consensus 37 ~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~g~~D~t~eal~~~~~ 105 (189)
T 1jlj_A 37 INLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIE 105 (189)
T ss_dssp HHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHHCS
T ss_pred HHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCcccHHHHHHHHhc
Confidence 467788887 6776542 334444444444444432 37999999999553 4555555543
No 406
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=24.96 E-value=1.4e+02 Score=26.00 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCC-CchhhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q 022147 108 RPKRLYIFVNPFGGK-KIASKIFLDDVKPLLEDANIQFTVQETTQQL 153 (302)
Q Consensus 108 r~~r~~vivNP~sG~-~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~ 153 (302)
+++|++++.+-.... |.+.... ..+...| .|.++.++......
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~-~~l~~~L--~g~~v~v~~~~~~~ 46 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYL-RDFIATQ--DPESIVVFASTQNA 46 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHH-HHHHTTS--CGGGEEEEEECSSH
T ss_pred CCceEEEEeCccCCccchHHHHH-HHHHHHh--cCCeEEEEECCCCc
Confidence 457788887732211 1222222 3455555 46777777666544
No 407
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=24.93 E-value=1.1e+02 Score=25.27 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=32.4
Q ss_pred CcEEEEEE-cCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC-----CcchHHHHHHHhhcCCCceEEEE
Q 022147 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-----QQLHAKEIVKVLDLSKYDGIVCV 173 (302)
Q Consensus 109 ~~r~~viv-NP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~-----~~~~a~el~~~~~~~~~d~IVvv 173 (302)
|+|+++|. +|..++. .+.+.+...+++.|.+++++.-. ...+..+..+++. ..|.||+.
T Consensus 1 MmkiLiI~gsp~~~~s----~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~--~AD~iv~~ 65 (192)
T 3f2v_A 1 MPKTLIILAHPNISQS----TVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIE--THDSLVWQ 65 (192)
T ss_dssp -CCEEEEECCTTGGGC----SHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHH--TSSSEEEE
T ss_pred CCEEEEEEeCCCccHH----HHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHH--hCCEEEEE
Confidence 35666655 6665431 23456666677778777765432 1234444445543 56777765
No 408
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=24.84 E-value=30 Score=27.99 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=30.9
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILV 180 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl~ 180 (302)
++++|++=.. .|..+++. +.+...+.. ++.++++..... + ...+ ..||.||++. |+|.+.
T Consensus 1 ~kilI~Y~S~--tGnT~~iA-~~ia~~l~~-~~~v~~~~~~~~-~----~~~l--~~~d~iilg~pt~~~G~~p 63 (179)
T 1yob_A 1 AKIGLFFGSN--TGKTRKVA-KSIKKRFDD-ETMSDALNVNRV-S----AEDF--AQYQFLILGTPTLGEGELP 63 (179)
T ss_dssp CCEEEEECCS--SSHHHHHH-HHHHTTSCT-TTBCCCEEGGGC-C----HHHH--HTCSEEEEEEECBTTTBCS
T ss_pred CeEEEEEECC--CcHHHHHH-HHHHHHhCC-CCceEEEEhhhC-C----HHHH--hcCCEEEEEeccCCCCcCC
Confidence 4677887544 45555443 466665544 333444433221 1 1222 3688877764 566554
No 409
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=24.79 E-value=1.3e+02 Score=26.03 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchH------------HHHHHHhhcCCCceEEEEcCCc
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHA------------KEIVKVLDLSKYDGIVCVSGDG 177 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a------------~el~~~~~~~~~d~IVvvGGDG 177 (302)
..+...|.+.|+++.++........ ..+.+.+...++|.|++-+...
T Consensus 37 ~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dvi~~~~~~~ 95 (342)
T 2iuy_A 37 ANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRTADVDVVHDHSGGV 95 (342)
T ss_dssp HHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHHCCCSEEEECSSSS
T ss_pred HHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHhcCCCEEEECCchh
Confidence 5677888888998887765432211 1344444445789888777553
No 410
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=24.75 E-value=1.8e+02 Score=23.57 Aligned_cols=95 Identities=21% Similarity=0.300 Sum_probs=56.4
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcC-C---cEEEEEeCCcchHHHHHHHhh-cCCCceEEEEc----CCch
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDAN-I---QFTVQETTQQLHAKEIVKVLD-LSKYDGIVCVS----GDGI 178 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag-~---~~~v~~T~~~~~a~el~~~~~-~~~~d~IVvvG----GDGT 178 (302)
...|+.|+.-.+-.. -..+.. +-....|..+| + +++++.....-+..-.++.+. ..+||.||++| |+-.
T Consensus 11 ~~~ri~IV~arfn~~-I~~~Ll-~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~ 88 (156)
T 3nq4_A 11 PDARVAITIARFNQF-INDSLL-DGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTA 88 (156)
T ss_dssp TTCCEEEEEESTTHH-HHHHHH-HHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEEEEECCSST
T ss_pred CCCEEEEEEeeCcHH-HHHHHH-HHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCch
Confidence 345777777554322 122333 45566777888 5 577777766666666666654 36799999998 6543
Q ss_pred -----HHHHHHHHhcCccccccCCccEEEecC
Q 022147 179 -----LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 179 -----l~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
-+++.+||++-.- +...++-+|+|..
T Consensus 89 Hfd~Va~~v~~Gl~~v~L-~~~vPV~~GVLT~ 119 (156)
T 3nq4_A 89 HFEYVAGGASNGLASVAQ-DSGVPVAFGVLTT 119 (156)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHCCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHh-ccCCCEEEEEeCC
Confidence 3456677765311 1123455677755
No 411
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=24.72 E-value=2e+02 Score=20.90 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE----cCCchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV----SGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv----GGDGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
...++.+|+..|+. +....+..+|.+..++ ..+|.|++- |.|| .+++..|...+. ...+|+.++-.
T Consensus 17 ~~~l~~~L~~~g~~--v~~~~~~~~al~~~~~---~~~dlvl~D~~lp~~~g--~~~~~~lr~~~~---~~~~pii~~t~ 86 (136)
T 3t6k_A 17 AEMLELVLRGAGYE--VRRAASGEEALQQIYK---NLPDALICDVLLPGIDG--YTLCKRVRQHPL---TKTLPILMLTA 86 (136)
T ss_dssp HHHHHHHHHHTTCE--EEEESSHHHHHHHHHH---SCCSEEEEESCCSSSCH--HHHHHHHHHSGG---GTTCCEEEEEC
T ss_pred HHHHHHHHHHCCCE--EEEeCCHHHHHHHHHh---CCCCEEEEeCCCCCCCH--HHHHHHHHcCCC---cCCccEEEEec
Confidence 35677888887764 4556666666655443 578988774 5566 477777765421 13678777765
Q ss_pred CC
Q 022147 206 GT 207 (302)
Q Consensus 206 GT 207 (302)
-.
T Consensus 87 ~~ 88 (136)
T 3t6k_A 87 QG 88 (136)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 412
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=24.36 E-value=63 Score=22.92 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=22.6
Q ss_pred eCCcchHHHHHHHhhcC-CCc-eEEEEcCCchH
Q 022147 149 TTQQLHAKEIVKVLDLS-KYD-GIVCVSGDGIL 179 (302)
Q Consensus 149 T~~~~~a~el~~~~~~~-~~d-~IVvvGGDGTl 179 (302)
-+.++.|.-++..++.. ..+ .+=++.||-|+
T Consensus 21 kT~PG~A~~va~~iD~~~~~~~I~GTIAGDDTI 53 (78)
T 1xxa_A 21 HTSPGAAQLIARLLDSLGKAEGILGTIAGDDTI 53 (78)
T ss_dssp EESTTTHHHHHHHHTTTTTTTTEEEEEECSSEE
T ss_pred EeCCCcHHHHHHHHHhcCCCCCeEEEEecCCEE
Confidence 34578898888888743 444 77788888874
No 413
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=24.33 E-value=2.2e+02 Score=22.87 Aligned_cols=24 Identities=13% Similarity=0.519 Sum_probs=18.8
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
++|.|... ...+++|+++|.+.+.
T Consensus 116 RtY~~~d~-~~~AqeWv~aI~~~~~ 139 (151)
T 1w1g_A 116 RTYYLMDP-SGNAHKWCRKIQEVWR 139 (151)
T ss_dssp EEEEEECT-TSCHHHHHHHHHHHHH
T ss_pred ceEEEEcC-ccCHHHHHHHHHHHHH
Confidence 67778775 5578999999988764
No 414
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=24.31 E-value=3.3e+02 Score=23.50 Aligned_cols=79 Identities=8% Similarity=0.046 Sum_probs=48.9
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE-e-CCcchHHHHHHHhhcC-CCceEEEEcCCchHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-T-TQQLHAKEIVKVLDLS-KYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~-T-~~~~~a~el~~~~~~~-~~d~IVvvGGDGTl~evvn 184 (302)
..+++.+|..|.. .......+ +-....|+++|+. .+.. . ...+.+.+.++++... .+|+|+ +..|..-..+++
T Consensus 173 G~~~I~~i~~~~~-~~~~~~R~-~Gf~~al~~~g~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~ 248 (333)
T 3jvd_A 173 SGMNIAALVGEES-LSTTQERM-RGISHAASIYGAE-VTFHFGHYSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMR 248 (333)
T ss_dssp SSCEEEEEESCTT-SHHHHHHH-HHHHHHHHHTTCE-EEEEECCSSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHH
T ss_pred CCCeEEEEeCCCC-CccHHHHH-HHHHHHHHHCCCC-EEEecCCCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHH
Confidence 4578888887732 22333333 5677788888987 3333 2 2444556666665432 366655 577888888888
Q ss_pred HHhcCc
Q 022147 185 GLLERE 190 (302)
Q Consensus 185 gL~~~~ 190 (302)
.|.+..
T Consensus 249 al~~~G 254 (333)
T 3jvd_A 249 AFTRLN 254 (333)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 887763
No 415
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=24.25 E-value=1.6e+02 Score=24.34 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=32.3
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~ 180 (302)
.++++|+-++ | .|. .....|+.+|.++.++.. .. +...+|+||+-||-++..
T Consensus 23 ~~~I~il~~~--~------~~~-~~~~~l~~~G~~~~~~~~--~~---------~l~~~Dglil~GG~~~~~ 74 (219)
T 1q7r_A 23 NMKIGVLGLQ--G------AVR-EHVRAIEACGAEAVIVKK--SE---------QLEGLDGLVLPGGESTTM 74 (219)
T ss_dssp CCEEEEESCG--G------GCH-HHHHHHHHTTCEEEEECS--GG---------GGTTCSEEEECCCCHHHH
T ss_pred CCEEEEEeCC--C------CcH-HHHHHHHHCCCEEEEECC--HH---------HHhhCCEEEECCCChHHH
Confidence 3577877553 2 122 233567778887665432 21 235799999999987664
No 416
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=24.24 E-value=1.8e+02 Score=23.57 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc
Q 022147 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG 174 (302)
.+...|+.+|.++.++. ... +...+|+||+-|
T Consensus 17 ~~~~~l~~~G~~~~~~~--~~~---------~l~~~d~lil~G 48 (200)
T 1ka9_H 17 SAAKALEAAGFSVAVAQ--DPK---------AHEEADLLVLPG 48 (200)
T ss_dssp HHHHHHHHTTCEEEEES--STT---------SCSSCSEEEECC
T ss_pred HHHHHHHHCCCeEEEec--ChH---------HcccCCEEEECC
Confidence 34677888898776653 211 235799999955
No 417
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=24.06 E-value=3.8e+02 Score=23.78 Aligned_cols=73 Identities=8% Similarity=0.086 Sum_probs=45.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CC---chHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GD---GILVEV 182 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GD---GTl~ev 182 (302)
.+++++++= |..|...++. +.+...+...|++++++.-.. .+..++...+. .+|.||++. +. +.+.++
T Consensus 251 ~~~i~i~y~--S~~GnT~~lA-~~ia~~l~~~g~~v~~~~~~~-~~~~~~~~~~~--~~d~ii~g~p~y~~~~~~~~~~~ 324 (398)
T 1ycg_A 251 KAKAVIAYD--TMWLSTEKMA-HALMDGLVAGGCEVKLFKLSV-SDRNDVIKEIL--DARAVLVGSPTINNDILPVVSPL 324 (398)
T ss_dssp CSEEEEEEC--CSSSHHHHHH-HHHHHHHHHTTCEEEEEEGGG-SCHHHHHHHHH--HCSEEEEECCCBTTBCCGGGHHH
T ss_pred cCeEEEEEE--CCccHHHHHH-HHHHHHHHhcCCeEEEEECCC-CCHHHHHHHHH--HCCEEEEECCccCccchHHHHHH
Confidence 467777773 4455666555 567778888888877765442 33455555543 578888774 22 246666
Q ss_pred HHHHh
Q 022147 183 VNGLL 187 (302)
Q Consensus 183 vngL~ 187 (302)
+..+.
T Consensus 325 l~~l~ 329 (398)
T 1ycg_A 325 LDDLV 329 (398)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66553
No 418
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=24.01 E-value=2.1e+02 Score=24.87 Aligned_cols=42 Identities=26% Similarity=0.167 Sum_probs=28.4
Q ss_pred cCCCceEEEEcCC----chHHHHHHHHhcCccccccCCccEEEecCCChhhHH
Q 022147 164 LSKYDGIVCVSGD----GILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (302)
Q Consensus 164 ~~~~d~IVvvGGD----GTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A 212 (302)
..+-+++++.+|| |+-.+.+..+.+. .+++-+||+=|.=..|
T Consensus 90 ~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~-------gi~veviPGiSs~~aa 135 (280)
T 1s4d_A 90 RAGNRVLRLKGGDPFVFGRGGEEALTLVEH-------QVPFRIVPGITAGIGG 135 (280)
T ss_dssp HTTCCEEEEESBCTTSSSSHHHHHHHHHTT-------TCCEEEECCCCTTTHH
T ss_pred hCCCeEEEEcCCCCccccCHHHHHHHHHHC-------CCCEEEEcCccHHHHH
Confidence 3456889999999 5566677766554 5677788876554333
No 419
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=23.99 E-value=1.6e+02 Score=23.74 Aligned_cols=43 Identities=2% Similarity=0.082 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEE
Q 022147 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (302)
Q Consensus 129 ~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVv 172 (302)
.++.++......|++++.+.+.+.++..+...+... ++|+||+
T Consensus 32 i~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~-~~dgiiI 74 (146)
T 1h05_A 32 LVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAAD-AAEPVIL 74 (146)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHH-HTCCEEE
T ss_pred HHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhh-cCcEEEE
Confidence 345667777788999999999999988877776643 3676664
No 420
>2x9a_A Attachment protein G3P; transmembrane, phage infection, phage recognition, HOST-VIRU interaction, virion; 2.47A {Enterobacteria phage IF1} PDB: 2x9b_A
Probab=23.96 E-value=23 Score=24.48 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=10.4
Q ss_pred ceEEEEcCCchH
Q 022147 168 DGIVCVSGDGIL 179 (302)
Q Consensus 168 d~IVvvGGDGTl 179 (302)
.+|+|++||||+
T Consensus 39 tGViVg~~dgtv 50 (65)
T 2x9a_A 39 SGIGIGYDNDTS 50 (65)
T ss_dssp EEEEEEETTTTE
T ss_pred eeEEEECCCCCE
Confidence 479999999995
No 421
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=23.67 E-value=1.3e+02 Score=26.44 Aligned_cols=48 Identities=25% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHH
Q 022147 86 PLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLE 138 (302)
Q Consensus 86 ~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~ 138 (302)
..+.++.+.|.+.|++.. ...+.++|++|-.++ +.|.... ..+..+|.
T Consensus 223 ~Y~~~eL~~wa~~i~~~~---~~~~~vyv~FnN~~~-g~A~~nA-~~L~~~L~ 270 (273)
T 1vpq_A 223 LYSEEELKTLFEDVVELS---RRVKETYVFFNNCYK-GQAAINA-LQFKKMLE 270 (273)
T ss_dssp CCCHHHHHHHHHHHHHHH---TTSSEEEEEECCCGG-GHHHHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH---hcCCCEEEEEeCCCc-chHHHHH-HHHHHHHh
Confidence 457888999999998765 345789999986554 3444332 35555554
No 422
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=23.65 E-value=2.2e+02 Score=20.78 Aligned_cols=67 Identities=19% Similarity=0.107 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE-----cCCchHHHHHHHHhcCccccccCCccEEEec
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV-----SGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv-----GGDGTl~evvngL~~~~~~~~~~~~plgiIP 204 (302)
...++.+|+..|+. +....+..++.+..++ ...+|.|++- |.|| .+++..+...+ .+|+.++-
T Consensus 18 ~~~l~~~L~~~g~~--v~~~~~~~~a~~~l~~--~~~~dlvi~D~~l~~~~~g--~~~~~~l~~~~------~~~ii~ls 85 (140)
T 3h5i_A 18 AKTIANILNKYGYT--VEIALTGEAAVEKVSG--GWYPDLILMDIELGEGMDG--VQTALAIQQIS------ELPVVFLT 85 (140)
T ss_dssp HHHHHHHHHHTTCE--EEEESSHHHHHHHHHT--TCCCSEEEEESSCSSSCCH--HHHHHHHHHHC------CCCEEEEE
T ss_pred HHHHHHHHHHcCCE--EEEecChHHHHHHHhc--CCCCCEEEEeccCCCCCCH--HHHHHHHHhCC------CCCEEEEE
Confidence 35778888888764 4455555555544432 1468888774 3455 46777775432 67777776
Q ss_pred CCCh
Q 022147 205 AGTG 208 (302)
Q Consensus 205 ~GTg 208 (302)
.-..
T Consensus 86 ~~~~ 89 (140)
T 3h5i_A 86 AHTE 89 (140)
T ss_dssp SSSS
T ss_pred CCCC
Confidence 5443
No 423
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=23.60 E-value=2.8e+02 Score=23.99 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCc----hHHHHHHHHhcCccccccCCccEEEecCCChhhHHHh
Q 022147 165 SKYDGIVCVSGDG----ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 165 ~~~d~IVvvGGDG----Tl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~s 214 (302)
.+-+++++.+||= +..+.+..+... .+++-+||+=|.=..|.+
T Consensus 92 ~g~~Vv~L~~GDP~i~g~~~~l~~~l~~~-------gi~veviPGiSS~~aa~a 138 (285)
T 1cbf_A 92 EGKMVVRVHTGDPAMYGAIMEQMVLLKRE-------GVDIEIVPGVTSVFAAAA 138 (285)
T ss_dssp TTCCEEEEESBCTTTTCCCHHHHHHHHHT-------TCEEEEECCCCHHHHHHH
T ss_pred CCCeEEEEeCCCccccccHHHHHHHHHHC-------CCcEEEECCchHHHHHHH
Confidence 4668999999994 455666665543 578888888776444443
No 424
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.49 E-value=2.1e+02 Score=20.68 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhh-----c--CCCceEEEE----cCCchHHHHHHHHhcCccccccCCc
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD-----L--SKYDGIVCV----SGDGILVEVVNGLLEREDWNDAIKV 198 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~-----~--~~~d~IVvv----GGDGTl~evvngL~~~~~~~~~~~~ 198 (302)
...++.+|+..|..+.+....+..++.+..++.. . ..+|.|++- +.|| .+++..+..... ...+
T Consensus 19 ~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g--~~~~~~l~~~~~---~~~~ 93 (149)
T 1k66_A 19 FSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDG--REVLQEIKQDEV---LKKI 93 (149)
T ss_dssp HHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCH--HHHHHHHTTSTT---GGGS
T ss_pred HHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCH--HHHHHHHHhCcc---cCCC
Confidence 3577888988887545666677777666554311 0 468877763 3455 488888866521 1257
Q ss_pred cEEEecCCC
Q 022147 199 PLGVVPAGT 207 (302)
Q Consensus 199 plgiIP~GT 207 (302)
|+.++-.-.
T Consensus 94 ~ii~~t~~~ 102 (149)
T 1k66_A 94 PVVIMTTSS 102 (149)
T ss_dssp CEEEEESCC
T ss_pred eEEEEeCCC
Confidence 777775543
No 425
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=23.41 E-value=3.1e+02 Score=22.92 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=46.8
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE---EEEeC-CcchHHHHHHHhhc-CCCceEEEEcCCchHHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT---VQETT-QQLHAKEIVKVLDL-SKYDGIVCVSGDGILVEVV 183 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~---v~~T~-~~~~a~el~~~~~~-~~~d~IVvvGGDGTl~evv 183 (302)
.+++.+|..+.. .......+ +-++..+++.|+++. +...+ ..+.+.+.++++.. .++|+|+ +..|.+...++
T Consensus 125 ~~~i~~i~~~~~-~~~~~~R~-~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~-~~~d~~a~g~~ 201 (290)
T 3clk_A 125 HRQIGIAGIDQY-PYTGRKRL-AGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGII-AASDMTAIGIL 201 (290)
T ss_dssp CCSEEEESCCCC-TTTHHHHH-HHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEE-ESSHHHHHHHH
T ss_pred CCEEEEEeCCCC-CcchHHHH-HHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEE-ECCcHHHHHHH
Confidence 567877765532 22223233 466777888887653 23222 34455666666542 3567665 57788888889
Q ss_pred HHHhcC
Q 022147 184 NGLLER 189 (302)
Q Consensus 184 ngL~~~ 189 (302)
+.|.+.
T Consensus 202 ~al~~~ 207 (290)
T 3clk_A 202 NQASSF 207 (290)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 988765
No 426
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=23.32 E-value=1.8e+02 Score=19.79 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=31.6
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHh-hcCCCceEE
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL-DLSKYDGIV 171 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~-~~~~~d~IV 171 (302)
++++.++..|..+.- +.++++|+..+++++.+..+ .....++.+.. .....-.|+
T Consensus 5 m~~v~~y~~~~C~~C-------~~~~~~L~~~~i~~~~vdv~-~~~~~~l~~~~~~~~~vP~l~ 60 (89)
T 2klx_A 5 MKEIILYTRPNCPYC-------KRARDLLDKKGVKYTDIDAS-TSLRQEMVQRANGRNTFPQIF 60 (89)
T ss_dssp CCCEEEESCSCCTTT-------HHHHHHHHHHTCCEEEECSC-HHHHHHHHHHHHSSCCSCEEE
T ss_pred cceEEEEECCCChhH-------HHHHHHHHHcCCCcEEEECC-HHHHHHHHHHhCCCCCcCEEE
Confidence 446777777766543 24567788888888776655 33334455444 223334443
No 427
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=23.31 E-value=3.9e+02 Score=23.67 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhhhc----cCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe---CCcchHHHHHHHhh
Q 022147 91 SKRLWCEKLRDFIDS----FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLD 163 (302)
Q Consensus 91 ~~~~w~~~l~~~l~~----~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T---~~~~~a~el~~~~~ 163 (302)
.+++..+.+++.+.. ..+...+.+|.= |...+...|.+.-...+++.|+.++.+.- .+.++..+..+++.
T Consensus 12 ia~~i~~~~~~~v~~l~~~~~~~P~Lavilv---g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN 88 (285)
T 3l07_A 12 LSKDLKERLATQVQEYKHHTAITPKLVAIIV---GNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLN 88 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE---SCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceEEEEEE---CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 444555555544322 123334444332 45566667877888899999998876653 33445556666665
Q ss_pred cC-CCceEEE
Q 022147 164 LS-KYDGIVC 172 (302)
Q Consensus 164 ~~-~~d~IVv 172 (302)
.+ ..++|++
T Consensus 89 ~d~~v~GIlv 98 (285)
T 3l07_A 89 NDSSVHAILV 98 (285)
T ss_dssp TCTTCCEEEE
T ss_pred CCCCCcEEEE
Confidence 32 4555553
No 428
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=23.12 E-value=3.2e+02 Score=22.65 Aligned_cols=95 Identities=12% Similarity=0.206 Sum_probs=55.4
Q ss_pred hhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEE-EeCCcchHHHHHHHhhc--CCCceEEEEcCCc
Q 022147 101 DFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLHAKEIVKVLDL--SKYDGIVCVSGDG 177 (302)
Q Consensus 101 ~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~-~T~~~~~a~el~~~~~~--~~~d~IVvvGGDG 177 (302)
++|. ...+++.+|..|... ......+ +-....|+++|+++... ..... . .+.++++.. .++|+|+ +..|.
T Consensus 116 ~~L~--~G~~~I~~i~~~~~~-~~~~~R~-~Gf~~~l~~~g~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~ai~-~~~d~ 188 (277)
T 3hs3_A 116 KLLS--KKIEKVLIQHWPLSL-PTIRERI-EAMTAEASKLKIDYLLEETPENN-P-YISAQSALNKSNQFDAII-TVNDL 188 (277)
T ss_dssp HTSC--TTCCEEEEEESCTTS-HHHHHHH-HHHHHHHHHTTCEEEEEECCSSC-H-HHHHHHHHHTGGGCSEEE-CSSHH
T ss_pred HHHH--hCCCEEEEEeCCCcC-ccHHHHH-HHHHHHHHHCCCCCCCCCccCCc-h-HHHHHHHHcCCCCCCEEE-ECCHH
Confidence 4444 445788888766432 2333333 46677888899877653 22221 2 444554432 3567665 56788
Q ss_pred hHHHHHHHHhcCccccccCCcc--EEEecCCC
Q 022147 178 ILVEVVNGLLEREDWNDAIKVP--LGVVPAGT 207 (302)
Q Consensus 178 Tl~evvngL~~~~~~~~~~~~p--lgiIP~GT 207 (302)
....+++.|.+.. .++| +.++-.+-
T Consensus 189 ~A~g~~~al~~~g-----~~vP~di~vig~d~ 215 (277)
T 3hs3_A 189 YAAEIIKEAKRRN-----LKIPDDFQLVGYDN 215 (277)
T ss_dssp HHHHHHHHHHHTT-----CCTTTTCEEECSBC
T ss_pred HHHHHHHHHHHcC-----CCCCCceEEEeeCC
Confidence 8888899887763 2332 66665543
No 429
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=23.09 E-value=1.9e+02 Score=23.29 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=32.6
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~e 181 (302)
|+|++||-+ .+. |. .....|+.+|+++.++. ... . ...+|+||+-||-++..+
T Consensus 1 ~m~I~il~~--~~~------~~-~~~~~l~~~g~~~~~~~--~~~-------~--l~~~d~iil~GG~~~~~~ 53 (196)
T 2nv0_A 1 MLTIGVLGL--QGA------VR-EHIHAIEACGAAGLVVK--RPE-------Q--LNEVDGLILPGGESTTMR 53 (196)
T ss_dssp CCEEEEECS--SSC------CH-HHHHHHHHTTCEEEEEC--SGG-------G--GGGCSEEEECCSCHHHHH
T ss_pred CcEEEEEEc--cCC------cH-HHHHHHHHCCCEEEEeC--ChH-------H--HhhCCEEEECCCChhhHH
Confidence 467887765 221 21 22367778888765542 221 1 246999999999877653
No 430
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.05 E-value=2.2e+02 Score=20.76 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=31.9
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~e 157 (302)
+.+++.|+.-|..+..+..+.- ..++.+|+..+++|+.+.-.....+.+
T Consensus 6 ~~m~V~vy~~~~C~~C~~~~~~-~~ak~~L~~~gi~y~~vdI~~~~~~~~ 54 (111)
T 2ct6_A 6 SGMVIRVFIASSSGFVAIKKKQ-QDVVRFLEANKIEFEEVDITMSEEQRQ 54 (111)
T ss_dssp CCCCEEEEECSSCSCHHHHHHH-HHHHHHHHHTTCCEEEEETTTCHHHHH
T ss_pred CccEEEEEEcCCCCCcccchhH-HHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 3456778877766654432222 368889999999998777654434443
No 431
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=22.90 E-value=3.4e+02 Score=25.08 Aligned_cols=61 Identities=10% Similarity=0.195 Sum_probs=39.0
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC--CcchHHHHHHHhhcCCCceEEEE
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCV 173 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~--~~~~a~el~~~~~~~~~d~IVvv 173 (302)
..+++.|++-..-|. .++.. +.+..-|.+.|++..++... ...+..+++.++ .++++||+.
T Consensus 264 ~~~~v~I~Y~S~yGn--Te~mA-~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i--~~~~~ivlG 326 (410)
T 4dik_A 264 KKGKVTVIYDSMYGF--VENVM-KKAIDSLKEKGFTPVVYKFSDEERPAISEILKDI--PDSEALIFG 326 (410)
T ss_dssp CTTEEEEEEECSSSH--HHHHH-HHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHS--TTCSEEEEE
T ss_pred cccceeeEEecccCh--HHHHH-HHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHH--HhCCeEEEE
Confidence 456788888766554 33333 57888888889877654332 234556666665 367887774
No 432
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=22.85 E-value=3.2e+02 Score=23.44 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=48.1
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE---EEEeC-CcchHHHHHHHhhcC--CCceEEEEcCCchHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT---VQETT-QQLHAKEIVKVLDLS--KYDGIVCVSGDGILVE 181 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~---v~~T~-~~~~a~el~~~~~~~--~~d~IVvvGGDGTl~e 181 (302)
..+++.+|..|..+.......+ +-....|+++|+++. +.... ..+.+.+.++++... .+|+|+ +..|.....
T Consensus 176 G~~~I~~i~~~~~~~~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g 253 (332)
T 2hsg_A 176 GHKNIAFVSGTLEEPINHAKKV-KGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALG 253 (332)
T ss_dssp TCSCEEEEESCTTSHHHHTTHH-HHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHH
T ss_pred CCCEEEEEeCCcccCccHHHHH-HHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHH
Confidence 3578888876641222222233 456677888887643 33333 334455666665432 467766 578888888
Q ss_pred HHHHHhcC
Q 022147 182 VVNGLLER 189 (302)
Q Consensus 182 vvngL~~~ 189 (302)
+++.|.+.
T Consensus 254 ~~~al~~~ 261 (332)
T 2hsg_A 254 VIHGAQDR 261 (332)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99988765
No 433
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=22.64 E-value=2.4e+02 Score=23.57 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE---EEEeC-CcchHHHHHHHhhc-C---CCceEEEEcCCchHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT---VQETT-QQLHAKEIVKVLDL-S---KYDGIVCVSGDGILV 180 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~---v~~T~-~~~~a~el~~~~~~-~---~~d~IVvvGGDGTl~ 180 (302)
.+++.+|..|.. .......+ +-++..|+++|+++. +.... ..+.+.+.++++.. . ++|+|+ +..|....
T Consensus 125 ~~~I~~i~~~~~-~~~~~~R~-~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~ 201 (287)
T 3bbl_A 125 HRRIAILAWPED-SRVGNDRL-QGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIM-TLNDTMAI 201 (287)
T ss_dssp CCCEEEEECCTT-CHHHHHHH-HHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEE-ESSHHHHH
T ss_pred CCeEEEEeCCcc-cccHHHHH-HHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEE-ECCcHHHH
Confidence 467888876532 22222223 456677888887543 33333 34455666666643 2 466655 57888888
Q ss_pred HHHHHHhcC
Q 022147 181 EVVNGLLER 189 (302)
Q Consensus 181 evvngL~~~ 189 (302)
.+++.|.+.
T Consensus 202 g~~~al~~~ 210 (287)
T 3bbl_A 202 GAMAAARER 210 (287)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 888988765
No 434
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=22.63 E-value=4.2e+02 Score=23.79 Aligned_cols=80 Identities=10% Similarity=0.147 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhhhc---cC--CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhc
Q 022147 90 DSKRLWCEKLRDFIDS---FG--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL 164 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~---~~--r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~ 164 (302)
..++.+.+.+++.+.. .+ ....+.+|.= |...+.+.|.+.-...+++.|+.++.+.-...++..+..+++..
T Consensus 12 ~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilv---g~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~l~~~i~~lN~ 88 (320)
T 1edz_A 12 KVAETFNTEIINNVEEYKKTHNGQGPLLVGFLA---NNDPAAKMYATWTQKTSESMGFRYDLRVIEDKDFLEEAIIQANG 88 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEC---CCCHHHHHHHHHHHHHHHHHTCEEEEEECSSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEE---CCchhHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHcC
Confidence 3455555555554332 11 2233444332 45566677877888889999999988776554446666666653
Q ss_pred -CCCceEEE
Q 022147 165 -SKYDGIVC 172 (302)
Q Consensus 165 -~~~d~IVv 172 (302)
...|+|++
T Consensus 89 d~~v~GIlv 97 (320)
T 1edz_A 89 DDSVNGIMV 97 (320)
T ss_dssp CTTCCEEEE
T ss_pred CCCCCEEEE
Confidence 34667665
No 435
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=22.62 E-value=1.1e+02 Score=23.19 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE----cCCchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV----SGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv----GGDGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
..++.+|+..|+++. ....+..+|.+++++ ..+|.|+.= |.||. |++..+.++ ++|+.++.+
T Consensus 22 ~~l~~~L~~~G~~v~-~~a~~g~eAl~~~~~---~~~DlvllDi~mP~~~G~--el~~~lr~~-------~ipvI~lTa 87 (123)
T 2lpm_A 22 MLIEDTLCELGHEVA-ATASRMQEALDIARK---GQFDIAIIDVNLDGEPSY--PVADILAER-------NVPFIFATG 87 (123)
T ss_dssp HHHHHHHHHHCCCCC-BCSCCHHHHHHHHHH---CCSSEEEECSSSSSCCSH--HHHHHHHHT-------CCSSCCBCT
T ss_pred HHHHHHHHHCCCEEE-EEECCHHHHHHHHHh---CCCCEEEEecCCCCCCHH--HHHHHHHcC-------CCCEEEEec
Confidence 466778888887541 123445556665544 578977663 88995 788877654 567766643
No 436
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=22.60 E-value=4e+02 Score=23.74 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=49.7
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHh
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~ 187 (302)
.-+++.+|+.... .+.. +.+.++..+++.|+.+...+.-. .+...++.++...+.|+|++++-......++..+.
T Consensus 153 g~~~v~ii~~~~~---~g~~-~~~~~~~~~~~~g~~v~~~~~~~-~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~ 227 (433)
T 4f11_A 153 QWKRVGTLTQDVQ---RFSE-VRNDLTGVLYGEDIEISDTESFS-NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAY 227 (433)
T ss_dssp TCCEEEEEEESSH---HHHH-HHHHHHHHSSSSSCEEEEEEEES-SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHH
T ss_pred CCcEEEEEEecch---hhHH-HHHHHHHHHHHcCceEEEEeccC-cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHH
Confidence 4578888886432 2222 23577788888888765433322 24445566666678899888887777777777765
Q ss_pred cC
Q 022147 188 ER 189 (302)
Q Consensus 188 ~~ 189 (302)
+.
T Consensus 228 ~~ 229 (433)
T 4f11_A 228 EE 229 (433)
T ss_dssp HT
T ss_pred Hc
Confidence 54
No 437
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=22.38 E-value=1.1e+02 Score=25.75 Aligned_cols=78 Identities=12% Similarity=0.136 Sum_probs=46.2
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE---EE--EeCC-----cchHHHHHHHhhcCCCceEEEEcCCch
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT---VQ--ETTQ-----QLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~---v~--~T~~-----~~~a~el~~~~~~~~~d~IVvvGGDGT 178 (302)
.+++.+|..|.. .......+ +-+...|++.|+++. +. .... ...+.+.++++...++|+|++ .+|.+
T Consensus 122 ~~~I~~i~~~~~-~~~~~~R~-~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~ 198 (288)
T 2qu7_A 122 CKEVGLLLANPN-ISTTIGRK-NGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLL 198 (288)
T ss_dssp CCCEEEEECCTT-SHHHHHHH-HHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHH
T ss_pred CCcEEEEecCCC-CCCHHHHH-HHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHH
Confidence 578888876532 22222223 456677888887653 33 2332 334455555543336777664 56888
Q ss_pred HHHHHHHHhcC
Q 022147 179 LVEVVNGLLER 189 (302)
Q Consensus 179 l~evvngL~~~ 189 (302)
...+++.|.+.
T Consensus 199 a~g~~~al~~~ 209 (288)
T 2qu7_A 199 LLGALQAIKES 209 (288)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHh
Confidence 88888888765
No 438
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=22.37 E-value=2.7e+02 Score=24.40 Aligned_cols=78 Identities=12% Similarity=0.041 Sum_probs=43.3
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE--eCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~--T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
..+|+.+|.... ..+... .+.++..+++.|+++.... .....+....+.++...++|.|++.+-......++..
T Consensus 141 g~~~vaii~~~~---~~g~~~-~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~ 216 (379)
T 3n0w_A 141 GYKTWFLMLPDA---AYGDLM-NAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQ 216 (379)
T ss_dssp TCCEEEEEEESS---HHHHHH-HHHHHHHHHHHTCEEEEEEEECTTCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHH
T ss_pred CCcEEEEEeccc---chhHHH-HHHHHHHHHHcCCEEEEEEeCCCCCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHH
Confidence 457888885322 122222 3577788888888754322 2222334445555555678877765432445556666
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 217 ~~~~ 220 (379)
T 3n0w_A 217 AREF 220 (379)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 6544
No 439
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=22.01 E-value=1.9e+02 Score=19.67 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=25.4
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT 150 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~ 150 (302)
.++++.++..|..+.- +.++++|++.+++|+.+...
T Consensus 10 ~M~~v~ly~~~~Cp~C-------~~~~~~L~~~gi~~~~~~v~ 45 (92)
T 3ic4_A 10 GMAEVLMYGLSTCPHC-------KRTLEFLKREGVDFEVIWID 45 (92)
T ss_dssp TCSSSEEEECTTCHHH-------HHHHHHHHHHTCCCEEEEGG
T ss_pred CCceEEEEECCCChHH-------HHHHHHHHHcCCCcEEEEee
Confidence 3566778878755422 45678888889998877665
No 440
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=21.94 E-value=1.5e+02 Score=27.92 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhhcc-CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC--cEEEEEeCC------------cchHH
Q 022147 92 KRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI--QFTVQETTQ------------QLHAK 156 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~-~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~--~~~v~~T~~------------~~~a~ 156 (302)
.+.|.+.+.+.++.. -+.+.+-|++.|..|.+.. .+..+|+..|+ ++.....+. ..++.
T Consensus 157 ~~~Y~~~l~~~~~~~~i~~~~lkivvd~~nG~~~~------~~~~~l~~lG~~~~v~~~~~~pDg~Fp~~~p~p~~~~~~ 230 (464)
T 1tuo_A 157 REAYFEALKAHLDLKALSGFSGVLYHDSMGGAGAG------FLKGFLRHVGLEIPVRPIREEPHPLFHGVNPEPIPKNLG 230 (464)
T ss_dssp HHHHHHHHHTTSCHHHHTTCCSCEEEECTTSTTTT------HHHHHHHHTTCCCCEEEESCSCCTTGGGSCSCCSGGGCH
T ss_pred HHHHHHHHhhhcChhhccccCCEEEEECCCCcHHH------HHHHHHHHCCCCceEEEEecccCCCCCCCCcCCCchhHH
Confidence 456777777765321 1224677999997776543 23567777787 554332221 12456
Q ss_pred HHHHHhh-cCCCceEEEEcCCc
Q 022147 157 EIVKVLD-LSKYDGIVCVSGDG 177 (302)
Q Consensus 157 el~~~~~-~~~~d~IVvvGGDG 177 (302)
++++.+. ..+.|..++.=|||
T Consensus 231 ~l~~~v~~~~~adlgia~DgDa 252 (464)
T 1tuo_A 231 VTLAVLGPETPPSFAVATDGDA 252 (464)
T ss_dssp HHHHHHTTCCTTCEEEEECTTS
T ss_pred HHHHHHHhccCCCEEEEECCCC
Confidence 6776665 45555444444433
No 441
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=21.90 E-value=74 Score=24.11 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.7
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+++.|...|+++.++|+.+|+..+.
T Consensus 91 ~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 91 KNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 6788889999999999999988763
No 442
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=21.90 E-value=2.2e+02 Score=23.32 Aligned_cols=95 Identities=9% Similarity=0.134 Sum_probs=55.8
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC---cEEEEEeCCcchHHHHHHHhhc------CCCceEEEEc----
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI---QFTVQETTQQLHAKEIVKVLDL------SKYDGIVCVS---- 174 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~---~~~v~~T~~~~~a~el~~~~~~------~~~d~IVvvG---- 174 (302)
.+.|+.|++-.+.-. -..+.. +-....|..+|+ +++++.....-+.--.++.+.. .+||.||++|
T Consensus 15 ~~~ri~IV~arfn~~-I~~~Ll-~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavIaLG~VIr 92 (168)
T 1ejb_A 15 SKIRVGIIHARWNRV-IIDALV-KGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIK 92 (168)
T ss_dssp TTCCEEEEECCTTHH-HHHHHH-HHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEEEC
T ss_pred CCCEEEEEEEeCcHH-HHHHHH-HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEEEeccccc
Confidence 345788877554321 122333 455667777885 4666666666666555565543 5799999998
Q ss_pred CCch-----HHHHHHHHhcCccccccCCccEEEecC
Q 022147 175 GDGI-----LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 175 GDGT-----l~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
|+-. -+++.+||++-.- +...++-+|+|+.
T Consensus 93 G~T~Hfd~Va~~vs~Gl~~vsL-~~~vPV~~GVLT~ 127 (168)
T 1ejb_A 93 GSTMHFEYISDSTTHALMNLQE-KVDMPVIFGLLTC 127 (168)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHH-HHTSCBCCEEEEE
T ss_pred CCchHHHHHHHHHHHHHHHHHh-hcCCCEEEEEecC
Confidence 5544 3456677765311 1224566788843
No 443
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=21.90 E-value=2.6e+02 Score=23.72 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEE-cCCchHHHH-----HHHHhcCccccccCCccEEEec
Q 022147 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV-SGDGILVEV-----VNGLLEREDWNDAIKVPLGVVP 204 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvv-GGDGTl~ev-----vngL~~~~~~~~~~~~plgiIP 204 (302)
+.+...+...|++++.+.....++..+.+ .....++|.||+. -|.+.+.+. ...++.. .++|+.++|
T Consensus 89 ~~~~~~~~~~g~~~~~~~v~~~g~~~~~I-~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~------~~~PVlvv~ 161 (294)
T 3loq_A 89 PEVAQKIEAAGIKAEVIKPFPAGDPVVEI-IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHD------SKVPVYIFK 161 (294)
T ss_dssp HHHHHHHHHTTCEEEECSSCCEECHHHHH-HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHH------CSSCEEEEC
T ss_pred HHHHHHHHHcCCCcceeEeeccCChhHhe-eeccCCCCEEEEcCCCCccccceeeccHHHHHHhc------CCCCEEEec
Confidence 35556666778877651112123333322 3344578866654 245555543 3444443 278999999
Q ss_pred CCC
Q 022147 205 AGT 207 (302)
Q Consensus 205 ~GT 207 (302)
.+.
T Consensus 162 ~~~ 164 (294)
T 3loq_A 162 HDM 164 (294)
T ss_dssp CCT
T ss_pred Ccc
Confidence 876
No 444
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=21.89 E-value=1.1e+02 Score=25.56 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=41.3
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHHh--cCCcEEEEEeC------CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHH
Q 022147 113 YIFVNPFGGKKIASKIFLDDVKPLLED--ANIQFTVQETT------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (302)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~L~~--ag~~~~v~~T~------~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvn 184 (302)
.+|-+-++|-. +.+.++..|++ .|+++.-+-|. ++.-+..+++.+.
T Consensus 25 IaIgsDhaG~~-----lK~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~--------------------- 78 (179)
T 3k7p_A 25 VAIGTDHPAFA-----IHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVA--------------------- 78 (179)
T ss_dssp EEEEECTGGGG-----GHHHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHH---------------------
T ss_pred EEEEECchHHH-----HHHHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHH---------------------
Confidence 55667777642 23578889998 78766544332 2333333333332
Q ss_pred HHhcCccccccCCccEEEecCCChhhHHHhhh
Q 022147 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~ 216 (302)
.. ....||+=||||++++-+.+
T Consensus 79 ---~g-------~~d~GIliCGTGiG~sIaAN 100 (179)
T 3k7p_A 79 ---RK-------EVEFGVLAAGSGIGMSIAAN 100 (179)
T ss_dssp ---TT-------SSSEEEEEESSSHHHHHHHH
T ss_pred ---cC-------CCCEEEEEccCcHHHhhHhh
Confidence 22 45678888888888887775
No 445
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=21.77 E-value=2.3e+02 Score=24.05 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCch----HHHHHHHHhcCccccccCCccEEEecCCChhhHH
Q 022147 165 SKYDGIVCVSGDGI----LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (302)
Q Consensus 165 ~~~d~IVvvGGDGT----l~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A 212 (302)
.+-+++++.+||=. ..+++..+.+. .+++-+||+=|.=..|
T Consensus 95 ~g~~Va~l~~GDP~~~~~~~~l~~~l~~~-------gi~v~viPGiSs~~aa 139 (259)
T 2e0n_A 95 AGRRVAVVSVGDGGFYSTASAIIERARRD-------GLDCSMTPGIPAFIAA 139 (259)
T ss_dssp TTCEEEEEESBCTTBSCTHHHHHHHHHTT-------TCCEEEECCCCHHHHH
T ss_pred CCCeEEEEeCCCCcccccHHHHHHHHHHC-------CCCEEEeCChhHHHHH
Confidence 34567777788743 44555555443 4566666665544433
No 446
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=21.75 E-value=2.7e+02 Score=22.40 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=56.2
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC---cEEEEEeCCcchHHHHHHHhhc-CCCceEEEEc----CCch-
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI---QFTVQETTQQLHAKEIVKVLDL-SKYDGIVCVS----GDGI- 178 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~---~~~v~~T~~~~~a~el~~~~~~-~~~d~IVvvG----GDGT- 178 (302)
.+.|+.|+.-.+... -..+.. +-....|..+|+ +++++.....-+..-.++.+.. .+||.||++| |+-.
T Consensus 11 ~~~ri~IV~arfn~~-I~~~Ll-~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~VIrG~T~H 88 (154)
T 1hqk_A 11 EGLRFGIVASRFNHA-LVDRLV-EGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPH 88 (154)
T ss_dssp TTCCEEEEEECTTHH-HHHHHH-HHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEEECCSSTH
T ss_pred CCCEEEEEEeeCcHH-HHHHHH-HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchH
Confidence 345788877654332 122333 455567777885 4677777777777666777653 5799999998 5443
Q ss_pred ----HHHHHHHHhcCccccccCCccEEEecCC
Q 022147 179 ----LVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (302)
Q Consensus 179 ----l~evvngL~~~~~~~~~~~~plgiIP~G 206 (302)
-+++.+||++-.- +...++-.|+|-..
T Consensus 89 fd~Va~~vs~gl~~v~l-~~~vPV~~GVLT~~ 119 (154)
T 1hqk_A 89 FDYIASEVSKGLANLSL-ELRKPITFGVITAD 119 (154)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTSCEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHh-hcCCCEEEEEeCCC
Confidence 3456667765311 11234445555554
No 447
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=21.70 E-value=52 Score=27.18 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=24.0
Q ss_pred Cce-EEEEcCCchHHHHHHHHhcCccccccCCccEEEecC
Q 022147 167 YDG-IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 167 ~d~-IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~ 205 (302)
.|+ |++=||=||+.|+...+.. ..|+.++|.
T Consensus 108 sda~IvlpGg~GTL~E~~~al~~--------~kpV~~l~~ 139 (176)
T 2iz6_A 108 SNVLVAVGMGPGTAAEVALALKA--------KKPVVLLGT 139 (176)
T ss_dssp CSEEEEESCCHHHHHHHHHHHHT--------TCCEEEESC
T ss_pred CCEEEEecCCccHHHHHHHHHHh--------CCcEEEEcC
Confidence 344 5555778999999999843 679999997
No 448
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=21.62 E-value=1.3e+02 Score=26.91 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=46.1
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcc--hHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL--HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~--~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
.-+++.+|+|-.-| .. .. +.++..+++.|+.+...+....+ +...+..++...+.|.|++.+-......++..
T Consensus 127 g~~~v~ii~d~~~g--~~--~~-~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~q 201 (384)
T 3saj_A 127 KWQTFVYIYDADRG--LS--VL-QRVLDTAAEKNWQVTAVNILTTTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQ 201 (384)
T ss_dssp TCCEEEEEECSTTC--SH--HH-HHHHHHHHHHTCEEEEEEGGGCCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHH
T ss_pred CCcEEEEEEeCchh--HH--HH-HHHHHHhhhcCceEEEEEeccCCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHH
Confidence 45789999965333 22 22 46777788888876655432222 22233334444567888887766677777777
Q ss_pred HhcC
Q 022147 186 LLER 189 (302)
Q Consensus 186 L~~~ 189 (302)
+.+.
T Consensus 202 a~~~ 205 (384)
T 3saj_A 202 IVKL 205 (384)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 6554
No 449
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=21.54 E-value=40 Score=27.64 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=42.6
Q ss_pred HHHHHHhcCCcEEEEEeCCcc----hHH-----HHHHHhhcCCCceEEEEcCCch--------HHHHHHHHhcCcccccc
Q 022147 133 VKPLLEDANIQFTVQETTQQL----HAK-----EIVKVLDLSKYDGIVCVSGDGI--------LVEVVNGLLEREDWNDA 195 (302)
Q Consensus 133 v~~~L~~ag~~~~v~~T~~~~----~a~-----el~~~~~~~~~d~IVvvGGDGT--------l~evvngL~~~~~~~~~ 195 (302)
....|+++|+++++...+... +.. ....+++..+||.|++.||-|+ +.+.+....++
T Consensus 27 p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~------ 100 (177)
T 4hcj_A 27 SKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDN------ 100 (177)
T ss_dssp HHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHT------
T ss_pred HHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHh------
Confidence 345677888877765443210 000 0122333457999999999886 33444444443
Q ss_pred CCccEEEecCCChhhHHHh
Q 022147 196 IKVPLGVVPAGTGNGMIKS 214 (302)
Q Consensus 196 ~~~plgiIP~GTgN~~A~s 214 (302)
..+++-|=.|. -.+++.
T Consensus 101 -~k~iaaIC~g~-~~La~a 117 (177)
T 4hcj_A 101 -QKIVAGIGSGV-VIMANA 117 (177)
T ss_dssp -TCEEEEETTHH-HHHHHT
T ss_pred -CCEEEEecccH-HHHHHC
Confidence 56888887775 455543
No 450
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=21.50 E-value=2.4e+02 Score=20.62 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCc---EEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCch------HHHHHHHHhcCccccccCCccEE
Q 022147 131 DDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI------LVEVVNGLLEREDWNDAIKVPLG 201 (302)
Q Consensus 131 ~~v~~~L~~ag~~---~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGT------l~evvngL~~~~~~~~~~~~plg 201 (302)
+.++.+++..++. ++...... .-+.++.+.....++|.||+..- |+ +..+.+.++.+ .++|+-
T Consensus 69 ~~l~~~~~~~~~~~~~v~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~-~~~~~~~~~Gs~~~~v~~~------~~~pVl 140 (143)
T 3fdx_A 69 TQLKEIAKKFSIPEDRMHFHVAEG-SPKDKILALAKSLPADLVIIASH-RPDITTYLLGSNAAAVVRH------AECSVL 140 (143)
T ss_dssp HHHHHHHTTSCCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEEESS-CTTCCSCSSCHHHHHHHHH------CSSEEE
T ss_pred HHHHHHHHHcCCCCCceEEEEEec-ChHHHHHHHHHHhCCCEEEEeCC-CCCCeeeeeccHHHHHHHh------CCCCEE
Confidence 4566666666542 34333322 33455666666567887776643 32 23445555554 267887
Q ss_pred Eec
Q 022147 202 VVP 204 (302)
Q Consensus 202 iIP 204 (302)
++|
T Consensus 141 vv~ 143 (143)
T 3fdx_A 141 VVR 143 (143)
T ss_dssp EEC
T ss_pred EeC
Confidence 776
No 451
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=21.43 E-value=2.1e+02 Score=19.88 Aligned_cols=47 Identities=15% Similarity=0.321 Sum_probs=28.6
Q ss_pred cEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHH
Q 022147 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (302)
Q Consensus 110 ~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~e 157 (302)
+++.|+.-|..+..+-.+-- ..++.+|+..|++|+.+.......+.+
T Consensus 2 ~~v~ly~~~~C~~c~~~~~~-~~ak~~L~~~~i~~~~~di~~~~~~~~ 48 (93)
T 1t1v_A 2 SGLRVYSTSVTGSREIKSQQ-SEVTRILDGKRIQYQLVDISQDNALRD 48 (93)
T ss_dssp CCEEEEECSSCSCHHHHHHH-HHHHHHHHHTTCCCEEEETTSCHHHHH
T ss_pred CCEEEEEcCCCCCchhhHHH-HHHHHHHHHCCCceEEEECCCCHHHHH
Confidence 35666666655543221111 467788999999998777654444444
No 452
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=21.37 E-value=2.6e+02 Score=23.24 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCcEEEEEeCCcchH-HHHHHHhhcCCCceEEEEc-CCc-h-----HHHHHHHHhcCccccccCCccEEEe
Q 022147 132 DVKPLLEDANIQFTVQETTQQLHA-KEIVKVLDLSKYDGIVCVS-GDG-I-----LVEVVNGLLEREDWNDAIKVPLGVV 203 (302)
Q Consensus 132 ~v~~~L~~ag~~~~v~~T~~~~~a-~el~~~~~~~~~d~IVvvG-GDG-T-----l~evvngL~~~~~~~~~~~~plgiI 203 (302)
.+...+...|++++.... .++. ..+.+. ..++|.||+.. |-+ . +..+.+.++.+ .++|+.++
T Consensus 78 ~~~~~~~~~g~~~~~~~~--~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~------a~~PVlvv 147 (268)
T 3ab8_A 78 RVRQSALAAGVAVEAVLE--EGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRA------SPVPVLLA 147 (268)
T ss_dssp HHHHHHHHTTCCEEEEEE--EECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHH------CSSCEEEE
T ss_pred HHHHHHHhCCCCeEEEEe--cCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHh------CCCCEEEE
Confidence 444556667887765543 2333 345544 46788666552 333 2 33466666654 27899999
Q ss_pred cCCCh
Q 022147 204 PAGTG 208 (302)
Q Consensus 204 P~GTg 208 (302)
|.+..
T Consensus 148 ~~~~~ 152 (268)
T 3ab8_A 148 PGEPV 152 (268)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 97653
No 453
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=21.35 E-value=3.2e+02 Score=24.54 Aligned_cols=77 Identities=8% Similarity=0.149 Sum_probs=45.1
Q ss_pred CcEEEEEEcCCC-CCCchhhhHHHHHHHHHHhcCCcEEEEEeC--CcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHH
Q 022147 109 PKRLYIFVNPFG-GKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (302)
Q Consensus 109 ~~r~~vivNP~s-G~~~a~~~~~~~v~~~L~~ag~~~~v~~T~--~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvng 185 (302)
-+++.+|+.-.. |.. .. .+.+.++..+++.|+.+...... ...+...+.+++. .+.|+|+++|-...+..++..
T Consensus 154 w~~v~ii~~d~~~g~~-~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~ 230 (441)
T 1jdp_A 154 WSRAALVYSDDKLERN-CY-FTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLV 230 (441)
T ss_dssp CCEEEEEEECCSSSCH-HH-HHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHH
T ss_pred CcEEEEEEEcCCcccc-hH-HHHHHHHHHHHhcCcEEEEEEecCCcccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHH
Confidence 467888775322 221 11 12256777888888876443322 2234556677776 678888887765556666665
Q ss_pred Hhc
Q 022147 186 LLE 188 (302)
Q Consensus 186 L~~ 188 (302)
+.+
T Consensus 231 ~~~ 233 (441)
T 1jdp_A 231 AHR 233 (441)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 454
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=21.30 E-value=2.9e+02 Score=21.49 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=43.7
Q ss_pred eEEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHH
Q 022147 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (302)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~ 160 (302)
-+.|....|..|......|.+.........-.++.+|........... .+.++..++..++.+.+...... ++++
T Consensus 50 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~-~~~~~~~~~~~~~~~~~~~d~~~----~~~~ 124 (196)
T 2ywi_A 50 VIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDS-PENMKKVAEELGYPFPYLYDETQ----EVAK 124 (196)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGS-HHHHHHHHHHHTCCSCEEECSSC----HHHH
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccC-HHHHHHHHHHcCCCceEEECCch----HHHH
Confidence 344555556666655555555443222111223334432221111111 13566667777777665543221 3455
Q ss_pred HhhcCCCceEEEEcCCch
Q 022147 161 VLDLSKYDGIVCVSGDGI 178 (302)
Q Consensus 161 ~~~~~~~d~IVvvGGDGT 178 (302)
.+.....-.++++..||.
T Consensus 125 ~~~v~~~P~~~lid~~G~ 142 (196)
T 2ywi_A 125 AYDAACTPDFYIFDRDLK 142 (196)
T ss_dssp HHTCCEESEEEEEETTCB
T ss_pred HhCCCCCCeEEEEcCCCe
Confidence 554444455667777774
No 455
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=21.30 E-value=2.3e+02 Score=21.67 Aligned_cols=43 Identities=12% Similarity=-0.007 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCcEEEEE-eCCcchHHHHHHHhhcCCCceEEEE
Q 022147 131 DDVKPLLEDANIQFTVQE-TTQQLHAKEIVKVLDLSKYDGIVCV 173 (302)
Q Consensus 131 ~~v~~~L~~ag~~~~v~~-T~~~~~a~el~~~~~~~~~d~IVvv 173 (302)
+.+...++..++++++.. .....-+..+.+.+...+.|.||+.
T Consensus 81 ~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G 124 (155)
T 3dlo_A 81 SWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIG 124 (155)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEEC
Confidence 455667777888877543 2222334556666665678876654
No 456
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=21.26 E-value=3.4e+02 Score=23.33 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=23.7
Q ss_pred CcEEEEEE-cCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe
Q 022147 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQET 149 (302)
Q Consensus 109 ~~r~~viv-NP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T 149 (302)
++|+++|+ .|.. .+...++. +.+...+++.|.++++..-
T Consensus 2 MmkiLiI~gSpr~-~s~t~~la-~~~~~~l~~~g~eV~~~dL 41 (273)
T 1d4a_A 2 GRRALIVLAHSER-TSFNYAMK-EAAAAALKKKGWEVVESDL 41 (273)
T ss_dssp CCEEEEEECCSCT-TSHHHHHH-HHHHHHHHHTTCEEEEEET
T ss_pred CCEEEEEEeCCCC-ccHHHHHH-HHHHHHHHhCCCeEEEEEc
Confidence 45666665 5653 33444443 5677778878887776553
No 457
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=21.17 E-value=1.9e+02 Score=23.44 Aligned_cols=97 Identities=19% Similarity=0.327 Sum_probs=56.3
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCC--cEEEEEeCCcchHHHHHHHhh-cCCCceEEEEc----CCch--
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI--QFTVQETTQQLHAKEIVKVLD-LSKYDGIVCVS----GDGI-- 178 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~--~~~v~~T~~~~~a~el~~~~~-~~~~d~IVvvG----GDGT-- 178 (302)
.+.|+.|+.-.+-.. -..+.. +-....|..+|+ +++++.....-+..-.++.+. ..+||.||++| |+-.
T Consensus 12 ~~~ri~IV~arfn~~-I~~~Ll-~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hf 89 (156)
T 1c2y_A 12 QSFRFAIVVARFNEF-VTRRLM-EGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHY 89 (156)
T ss_dssp TTCCEEEEEESTTHH-HHHHHH-HHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHH
T ss_pred CCCEEEEEEEeCcHH-HHHHHH-HHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHH
Confidence 345788777654322 122333 455667777886 466666665555555566654 35799999998 5543
Q ss_pred ---HHHHHHHHhcCccccccCCccEEEecCCC
Q 022147 179 ---LVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (302)
Q Consensus 179 ---l~evvngL~~~~~~~~~~~~plgiIP~GT 207 (302)
-+++.+||++-.- +...++-+|+|...|
T Consensus 90 d~Va~~v~~gl~~v~L-~~~vPV~~GVLT~~~ 120 (156)
T 1c2y_A 90 DAVVNSASSGVLSAGL-NSGVPCVFGVLTCDN 120 (156)
T ss_dssp HHHHHHHHHHHHHHHH-HHTSCEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHh-hcCCCEEEEEeCCCC
Confidence 3456677765311 112345566766653
No 458
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.14 E-value=1.4e+02 Score=22.40 Aligned_cols=78 Identities=6% Similarity=-0.015 Sum_probs=47.1
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcC---C-----chHHHHHH
Q 022147 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG---D-----GILVEVVN 184 (302)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGG---D-----GTl~evvn 184 (302)
+|++-.. .|..+++. +.+...|...|++++++...... . .+ ..++|.|+++.- . +.+...++
T Consensus 2 ~I~Y~S~--tGnT~~iA-~~ia~~l~~~g~~v~~~~~~~~~-~----~~--l~~~d~iiig~pty~~g~~p~~~~~~fl~ 71 (138)
T 5nul_A 2 KIVYWSG--TGNTEKMA-ELIAKGIIESGKDVNTINVSDVN-I----DE--LLNEDILILGCSAMTDEVLEESEFEPFIE 71 (138)
T ss_dssp EEEEECS--SSHHHHHH-HHHHHHHHHTTCCCEEEEGGGCC-H----HH--HTTCSEEEEEECCBTTTBCCTTTHHHHHH
T ss_pred EEEEECC--CchHHHHH-HHHHHHHHHCCCeEEEEEhhhCC-H----HH--HhhCCEEEEEcCccCCCCCChHHHHHHHH
Confidence 4555443 45566554 68888899899888877654322 1 12 347888777642 2 36788888
Q ss_pred HHhcCccccccCCccEEEecC
Q 022147 185 GLLEREDWNDAIKVPLGVVPA 205 (302)
Q Consensus 185 gL~~~~~~~~~~~~plgiIP~ 205 (302)
.|... ....+++++-.
T Consensus 72 ~l~~~-----l~~k~~~~f~t 87 (138)
T 5nul_A 72 EISTK-----ISGKKVALFGS 87 (138)
T ss_dssp HHGGG-----CTTCEEEEEEE
T ss_pred HHHhh-----cCCCEEEEEEe
Confidence 77542 12456665544
No 459
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.09 E-value=2.3e+02 Score=20.16 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhh----cCCCceEEEE----cCCchHHHHHHHHhcCccccccCCccEE
Q 022147 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD----LSKYDGIVCV----SGDGILVEVVNGLLEREDWNDAIKVPLG 201 (302)
Q Consensus 130 ~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~----~~~~d~IVvv----GGDGTl~evvngL~~~~~~~~~~~~plg 201 (302)
...++..|+..|..+.+....+..++.+..++.. ...+|.|++- +.|| .+++..|..... ...+|+.
T Consensus 15 ~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g--~~~~~~l~~~~~---~~~~pii 89 (140)
T 1k68_A 15 IRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDG--REVLAEIKSDPT---LKRIPVV 89 (140)
T ss_dssp HHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCH--HHHHHHHHHSTT---GGGSCEE
T ss_pred HHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccH--HHHHHHHHcCcc---cccccEE
Confidence 3577888998887656667777666665544310 1468877764 3344 477887766521 1257777
Q ss_pred EecCCC
Q 022147 202 VVPAGT 207 (302)
Q Consensus 202 iIP~GT 207 (302)
++-...
T Consensus 90 ~ls~~~ 95 (140)
T 1k68_A 90 VLSTSI 95 (140)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 765543
No 460
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=21.07 E-value=1.1e+02 Score=24.15 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEc---CCchH
Q 022147 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGIL 179 (302)
Q Consensus 111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvG---GDGTl 179 (302)
+++|++=. ..|..+++. +.+...+... .++++.-....+ ..+...||.|+++. |+|.+
T Consensus 1 ki~I~Y~S--~tGnT~~vA-~~ia~~l~~~--~~~~~~~~~~~~------~~~l~~~d~ii~g~pt~~~G~~ 61 (173)
T 2fcr_A 1 KIGIFFST--STGNTTEVA-DFIGKTLGAK--ADAPIDVDDVTD------PQALKDYDLLFLGAPTWNTGAD 61 (173)
T ss_dssp CEEEEECC--SSSHHHHHH-HHHHHHHGGG--BCCCEEGGGCSC------GGGGGGCSEEEEEEECCSTTCS
T ss_pred CEEEEEEC--CCchHHHHH-HHHHHHhccC--CcEEEehhhcCC------hhHHccCCEEEEEEeecCCCCc
Confidence 35677743 455666554 5777777654 233333222101 11234688777664 66777
No 461
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=21.03 E-value=4.3e+02 Score=23.29 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEE-eC--CcchHHHHHHHhhc-C
Q 022147 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT--QQLHAKEIVKVLDL-S 165 (302)
Q Consensus 90 ~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~-T~--~~~~a~el~~~~~~-~ 165 (302)
+.+++..+.+++.+...++..++.+|.= |...+...|.+.-....++.|+ ++.+. .+ +.++..+..+++.. .
T Consensus 8 ~~a~~i~~~~~~~v~~l~~~P~Lavilv---g~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D~ 83 (276)
T 3ngx_A 8 EIAEKKAENLHGIIERSGLEPSLKLIQI---GDNEAASIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKDP 83 (276)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEEEE---SCCHHHHHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEe---CCCHHHHHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4556666666666555454445554442 4556666787788888999999 76554 22 33444455555543 3
Q ss_pred CCceEEE
Q 022147 166 KYDGIVC 172 (302)
Q Consensus 166 ~~d~IVv 172 (302)
..++|++
T Consensus 84 ~v~GIlv 90 (276)
T 3ngx_A 84 QINGIMI 90 (276)
T ss_dssp TCCEEEE
T ss_pred CCcEEEE
Confidence 4556554
No 462
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=20.78 E-value=2.6e+02 Score=23.20 Aligned_cols=78 Identities=10% Similarity=0.179 Sum_probs=44.4
Q ss_pred CcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEE---EEEeC-CcchHHHHHHHhhc--CCCceEEEEcCCchHHHH
Q 022147 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT---VQETT-QQLHAKEIVKVLDL--SKYDGIVCVSGDGILVEV 182 (302)
Q Consensus 109 ~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~---v~~T~-~~~~a~el~~~~~~--~~~d~IVvvGGDGTl~ev 182 (302)
.+++.+|..+..- ......+ +-++..++++|+++. +.... ....+.+.++++.. .++|+|+| ..|.....+
T Consensus 126 ~~~i~~i~~~~~~-~~~~~R~-~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~ 202 (289)
T 1dbq_A 126 HREIGVIPGPLER-NTGAGRL-AGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGA 202 (289)
T ss_dssp CCSEEEECCC-------CHHH-HHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHH
T ss_pred CCeEEEEecCCcc-ccHHHHH-HHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHH
Confidence 4678887655321 1222223 456777888887543 12222 33445566666543 35676664 678888888
Q ss_pred HHHHhcC
Q 022147 183 VNGLLER 189 (302)
Q Consensus 183 vngL~~~ 189 (302)
++.|.+.
T Consensus 203 ~~al~~~ 209 (289)
T 1dbq_A 203 LCAADEM 209 (289)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 8888765
No 463
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=20.62 E-value=2.1e+02 Score=26.87 Aligned_cols=46 Identities=20% Similarity=0.162 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEE
Q 022147 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV 146 (302)
Q Consensus 92 ~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v 146 (302)
.+.|.+.+.+.+.. .+.+-|++.|..|.+.. ++ ..+|+..|+++..
T Consensus 156 ~~~Y~~~l~~~~~~---~~~lkivvD~~nG~~~~--~~----~~ll~~lG~~v~~ 201 (463)
T 1p5d_X 156 LPRYFKQIRDDIAM---AKPMKVVVDCGNGVAGV--IA----PQLIEALGCSVIP 201 (463)
T ss_dssp HHHHHHHHHTTCCC---SSCEEEEEECTTSGGGG--TH----HHHHHHHHEEEEE
T ss_pred HHHHHHHHHhhhcc---cCCCEEEEECCCCcHHH--HH----HHHHHHcCCeEEE
Confidence 34567776665532 15688999997775542 33 3556665665443
No 464
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=20.49 E-value=70 Score=27.10 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.6
Q ss_pred eeEEecCCChHHHHHHHHHHHhhhh
Q 022147 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~l~ 104 (302)
+.+.|...++++.+.|+++|++.+.
T Consensus 131 r~~~l~A~s~~e~~~Wv~aL~~~i~ 155 (228)
T 3tfm_A 131 RTFHLIAESPEDASQWFSVLSQVHS 155 (228)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999875
No 465
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=20.45 E-value=2.7e+02 Score=23.61 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=33.0
Q ss_pred HHHHhhcCCCceEEEEcCC----chHHHHHHHHhcCccccccCCccEEEecCCChhhHHH
Q 022147 158 IVKVLDLSKYDGIVCVSGD----GILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (302)
Q Consensus 158 l~~~~~~~~~d~IVvvGGD----GTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~ 213 (302)
+.+.+ ..+-+++++.+|| |+..+.+..+.+... ...+++=+||+=|.=..|.
T Consensus 71 li~~~-~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~~~---~~gi~veviPGiSS~~aa~ 126 (251)
T 3nut_A 71 ALEMA-AEGRRVVVVSSGDPGVFAMASALFEALEAHPE---HAGTEIRILPGITAMLAAA 126 (251)
T ss_dssp HHHHH-HTTCEEEEEESBCTTSSSHHHHHHHHHHHCGG---GTTCCEEEECCCCHHHHHH
T ss_pred HHHHH-HCCCeEEEEeCCCcccccCHHHHHHHHHhhcc---cCCCcEEEECCHHHHHHHH
Confidence 34433 3466788889999 666777777765210 0257888888876543333
No 466
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=20.14 E-value=2.3e+02 Score=22.90 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=39.6
Q ss_pred CcEEEEEE-cCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeC------------CcchHHHHHHHhhcCCCceEEEEcC
Q 022147 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT------------QQLHAKEIVKVLDLSKYDGIVCVSG 175 (302)
Q Consensus 109 ~~r~~viv-NP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~------------~~~~a~el~~~~~~~~~d~IVvvGG 175 (302)
++|+++|. .|..+ +...++. +.+...++ .+.+++++.-. .+.+..++.+++. ..|.||++.=
T Consensus 2 M~kilii~gS~r~~-s~t~~la-~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~--~AD~iV~~sP 76 (192)
T 3fvw_A 2 SKRILFIVGSFSEG-SFNRQLA-KKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQ--EADAIWIFSP 76 (192)
T ss_dssp -CEEEEEESCCSTT-CHHHHHH-HHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHH--HCSEEEEECC
T ss_pred CCEEEEEEcCCCCC-CHHHHHH-HHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHH--hCCEEEEECc
Confidence 45777666 55533 3334333 56666665 56666554332 1223455666654 5788888743
Q ss_pred ------CchHHHHHHHHh
Q 022147 176 ------DGILVEVVNGLL 187 (302)
Q Consensus 176 ------DGTl~evvngL~ 187 (302)
=|.+-..+.-+.
T Consensus 77 ~y~~~~p~~lK~~iD~~~ 94 (192)
T 3fvw_A 77 VYNYAIPGPVKNLLDWLS 94 (192)
T ss_dssp CBTTBCCHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHhh
Confidence 344555555554
No 467
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=20.14 E-value=2.8e+02 Score=20.77 Aligned_cols=42 Identities=17% Similarity=0.006 Sum_probs=23.3
Q ss_pred HHHHHHHhcCC-cEEEEEeCCcchHHHHHHH-hhcCCCceEEEE
Q 022147 132 DVKPLLEDANI-QFTVQETTQQLHAKEIVKV-LDLSKYDGIVCV 173 (302)
Q Consensus 132 ~v~~~L~~ag~-~~~v~~T~~~~~a~el~~~-~~~~~~d~IVvv 173 (302)
.+...++..|+ .++........-+.++.+. +...++|.||+.
T Consensus 83 ~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G 126 (156)
T 3fg9_A 83 EYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTG 126 (156)
T ss_dssp HHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEE
T ss_pred HHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEEC
Confidence 44455667787 3655444322334456655 455678876654
No 468
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=20.02 E-value=3e+02 Score=24.28 Aligned_cols=77 Identities=9% Similarity=0.107 Sum_probs=49.5
Q ss_pred CCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEe-CCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (302)
Q Consensus 108 r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T-~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL 186 (302)
.-+++.+|+|-.- +.... +.++..+++.|+.+..... ....+...+..++...+.|.|++.+-......++..+
T Consensus 137 g~~~v~ii~d~~~----g~~~~-~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa 211 (395)
T 3h6g_A 137 KWKTVTVVYDDST----GLIRL-QELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQA 211 (395)
T ss_dssp TCSEEEEEESSTH----HHHHT-HHHHTGGGTSSCEEEEEECCSSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred CCeEEEEEEEChh----HHHHH-HHHHHhhhcCCceEEEEEeCCCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHH
Confidence 4578888886422 33223 4667778888887654331 2234556677777767889988887777677777766
Q ss_pred hcC
Q 022147 187 LER 189 (302)
Q Consensus 187 ~~~ 189 (302)
.+.
T Consensus 212 ~~~ 214 (395)
T 3h6g_A 212 LAM 214 (395)
T ss_dssp HHT
T ss_pred HHc
Confidence 543
Done!