Query 022148
Match_columns 302
No_of_seqs 80 out of 82
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 14:43:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kgw_A Alanine-glyoxylate amin 51.6 25 0.00086 29.4 5.6 26 48-73 325-350 (393)
2 2ql2_B Neurod1, neurogenic dif 51.0 15 0.0005 26.5 3.5 25 21-45 3-27 (60)
3 1rz4_A Eukaryotic translation 50.9 7.9 0.00027 33.9 2.5 23 57-79 167-189 (226)
4 3ix7_A Uncharacterized protein 43.0 50 0.0017 27.0 6.0 46 24-71 52-101 (134)
5 2d5w_A Peptide ABC transporter 41.0 34 0.0012 32.2 5.2 48 32-79 338-396 (603)
6 1mdy_A Protein (MYOD BHLH doma 39.7 66 0.0023 23.6 5.6 46 16-61 8-53 (68)
7 3uwc_A Nucleotide-sugar aminot 38.5 60 0.0021 27.2 5.9 48 25-73 248-311 (374)
8 3nnk_A Ureidoglycine-glyoxylat 38.0 63 0.0022 27.3 6.0 24 50-73 329-352 (411)
9 3frk_A QDTB; aminotransferase, 37.9 41 0.0014 28.5 4.8 46 25-72 247-307 (373)
10 3u5v_A Protein MAX, transcript 36.7 18 0.00062 27.2 2.2 27 19-45 4-30 (76)
11 3isl_A Purine catabolism prote 36.7 62 0.0021 27.4 5.8 26 48-73 327-352 (416)
12 1hlo_A Protein (transcription 34.8 76 0.0026 23.2 5.3 45 18-62 10-54 (80)
13 4b0z_A RPN12, 26S proteasome r 34.6 22 0.00076 30.6 2.7 50 25-78 171-225 (229)
14 2huf_A Alanine glyoxylate amin 34.1 83 0.0029 26.5 6.1 23 51-73 323-345 (393)
15 1nkp_B MAX protein, MYC proto- 31.8 97 0.0033 22.7 5.5 42 21-62 3-44 (83)
16 2kxh_B Peptide of FAR upstream 31.4 17 0.00058 24.2 1.1 11 28-38 14-24 (31)
17 2o1b_A Aminotransferase, class 31.1 88 0.003 27.1 5.9 25 49-73 342-366 (404)
18 3lvu_A ABC transporter, peripl 29.4 46 0.0016 27.3 3.7 18 58-75 102-119 (258)
19 3kkc_A TETR family transcripti 28.7 1.1E+02 0.0038 22.4 5.4 47 23-80 6-52 (177)
20 3nyt_A Aminotransferase WBPE; 27.4 1.2E+02 0.0041 25.7 6.0 25 26-51 247-271 (367)
21 3him_A Probable transcriptiona 26.5 65 0.0022 24.0 3.8 44 26-80 13-56 (211)
22 3qqa_A CMER; alpha-helical, he 25.6 1.3E+02 0.0043 22.7 5.3 47 23-80 13-59 (216)
23 2qwt_A Transcriptional regulat 25.2 1.1E+02 0.0038 23.3 4.9 25 26-51 10-34 (196)
24 3hbx_A GAD 1, glutamate decarb 25.0 84 0.0029 28.9 4.9 49 22-71 338-402 (502)
25 3f1b_A TETR-like transcription 23.5 82 0.0028 23.4 3.8 45 25-80 10-54 (203)
26 3ry3_A Putative solute-binding 23.5 80 0.0027 29.4 4.5 48 31-78 297-354 (528)
27 3ez1_A Aminotransferase MOCR f 23.4 1.7E+02 0.0057 25.2 6.2 24 57-80 357-380 (423)
28 3nra_A Aspartate aminotransfer 22.6 1.6E+02 0.0056 24.8 5.9 24 54-78 349-372 (407)
29 1ng7_A Poliovirus 3A-N, genome 22.5 30 0.001 25.8 1.2 12 61-72 35-46 (60)
30 3rq1_A Aminotransferase class 22.4 97 0.0033 26.7 4.5 25 55-80 367-391 (418)
31 2z61_A Probable aspartate amin 22.2 1.7E+02 0.0059 24.6 5.9 19 55-73 316-334 (370)
32 3lhq_A Acrab operon repressor 22.2 1.3E+02 0.0044 22.5 4.7 45 24-79 9-53 (220)
33 4gl8_A Oligopeptide ABC transp 21.9 43 0.0015 30.7 2.3 39 31-69 315-363 (529)
34 2x5d_A Probable aminotransfera 21.6 1.8E+02 0.006 25.1 6.0 29 49-78 334-365 (412)
35 2x5f_A Aspartate_tyrosine_phen 21.2 1.2E+02 0.0043 26.2 5.0 24 50-74 375-398 (430)
36 3ffr_A Phosphoserine aminotran 20.9 1.1E+02 0.0039 25.0 4.5 46 25-73 265-327 (362)
37 3dpj_A Transcription regulator 20.7 95 0.0032 23.2 3.7 45 24-79 3-47 (194)
38 3f0h_A Aminotransferase; RER07 20.3 2.1E+02 0.007 23.9 6.0 47 27-74 279-338 (376)
39 2q5w_D Molybdopterin convertin 20.2 43 0.0015 23.3 1.6 44 37-80 4-58 (77)
No 1
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=51.64 E-value=25 Score=29.36 Aligned_cols=26 Identities=4% Similarity=0.107 Sum_probs=20.2
Q ss_pred CCCCCCCChHHHHHHHHHHhCcEEcC
Q 022148 48 YNLPKHCDNNEVLKALCAEAGWVVEE 73 (302)
Q Consensus 48 y~Lpk~~d~nevlkaL~~eaGw~ve~ 73 (302)
+.+|+..|..+|.+.|.+++|..|.+
T Consensus 325 ~~~~~~~~~~~~~~~l~~~~gi~v~~ 350 (393)
T 3kgw_A 325 VTVPAGYNWRDIVSYVLDHFSIEISG 350 (393)
T ss_dssp EECCTTBCHHHHHHHHHHHHCEECBC
T ss_pred EeCCCCCCHHHHHHHHHHhCCEEEeC
Confidence 34566667889999998888988875
No 2
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=51.04 E-value=15 Score=26.50 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhc
Q 022148 21 RENNRRRERRRRAIAAKIYTGLRAQ 45 (302)
Q Consensus 21 rEnnk~RERrRRAIaakIfaGLR~~ 45 (302)
|.....|||+|+.---.-|..||.+
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~ 27 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKV 27 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556689999999999999999985
No 3
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=50.89 E-value=7.9 Score=33.94 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCcEEcCCCcccc
Q 022148 57 NEVLKALCAEAGWVVEEDGTTYR 79 (302)
Q Consensus 57 nevlkaL~~eaGw~ve~dGttyr 79 (302)
.+-++.+|.+.||.|+.||..|=
T Consensus 167 ~~el~~fi~~~GW~vd~~g~I~~ 189 (226)
T 1rz4_A 167 DSQLKVWMSKYGWSADESGQIFI 189 (226)
T ss_dssp HHHHHHHHHHHTCEECC--CEEC
T ss_pred HHHHHHHHHHCCCEECCCccEEe
Confidence 46678888889999999997654
No 4
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=42.99 E-value=50 Score=27.05 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCC----CCCCCCChHHHHHHHHHHhCcEE
Q 022148 24 NRRRERRRRAIAAKIYTGLRAQGNY----NLPKHCDNNEVLKALCAEAGWVV 71 (302)
Q Consensus 24 nk~RERrRRAIaakIfaGLR~~gny----~Lpk~~d~nevlkaL~~eaGw~v 71 (302)
+.+|.|-||++ +|...||..+++ .+|...+..+.|.+||.+.|-++
T Consensus 52 ~~~r~rGr~gL--~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~~~~~l 101 (134)
T 3ix7_A 52 PLRRAKGRRGL--ETLERLREAAPLEVLETTPKGESVDEKLLFLARDLEAAL 101 (134)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHHTTCEE
T ss_pred hhhHHHHHHHH--HHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHHhCCEE
Confidence 56788888877 477888764432 45677788999999999987654
No 5
>2d5w_A Peptide ABC transporter, peptide-binding protein; protein-peptide complex, peptide binding protein; 1.30A {Thermus thermophilus}
Probab=40.97 E-value=34 Score=32.22 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhhcCCCCCCC-----------CCChHHHHHHHHHHhCcEEcCCCcccc
Q 022148 32 RAIAAKIYTGLRAQGNYNLPK-----------HCDNNEVLKALCAEAGWVVEEDGTTYR 79 (302)
Q Consensus 32 RAIaakIfaGLR~~gny~Lpk-----------~~d~nevlkaL~~eaGw~ve~dGttyr 79 (302)
.+|...+|.|.-.-.+--+|+ .--+-|--|+|.+||||..+.||..++
T Consensus 338 ~~i~~~~~~g~~~~a~~~~pp~~~~~~~~~~~~~yd~~kAk~LL~eAG~~~~~dG~~~~ 396 (603)
T 2d5w_A 338 EGLVKAFFDGLQPVAHTWIAPVNPLFNPNVKKYEFDLKKAEALLAEMGWRKGPDGILQR 396 (603)
T ss_dssp HHHHHHHHTTSSCBCSSSSCTTSTTCCTTSCCCCCCHHHHHHHHHHTTCEECTTSCEEE
T ss_pred HHHHHHHhcCCCcccCCCCCCCCcccccccccCCCCHHHHHHHHHHcCCcCCCCCeEee
Confidence 344567777754333322332 111235668899999999777776554
No 6
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=39.72 E-value=66 Score=23.64 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=30.9
Q ss_pred CChHHHhhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCChHHHHH
Q 022148 16 PTWRERENNRRRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLK 61 (302)
Q Consensus 16 pt~rErEnnk~RERrRRAIaakIfaGLR~~gny~Lpk~~d~nevlk 61 (302)
.+..-|...-.|||+|+.--..-|..||.+=-+..-+...--|+|+
T Consensus 8 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr 53 (68)
T 1mdy_A 8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILR 53 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHH
T ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 3455677778899999999999999999873321113333445554
No 7
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=38.47 E-value=60 Score=27.22 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCC-CCCCCC--------------C-ChHHHHHHHHHHhCcEEcC
Q 022148 25 RRRERRRRAIAAKIYTGLRAQGN-YNLPKH--------------C-DNNEVLKALCAEAGWVVEE 73 (302)
Q Consensus 25 k~RERrRRAIaakIfaGLR~~gn-y~Lpk~--------------~-d~nevlkaL~~eaGw~ve~ 73 (302)
+++.+|+++++..+..+|+..++ +.+|.. . |..+|.++| .++|..|-.
T Consensus 248 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gi~v~~ 311 (374)
T 3uwc_A 248 ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYL-KDNGIEVKI 311 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHH-HHTTBCCBC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHH-HHCCCcccc
Confidence 44556777888899999999887 666521 1 334555554 566887654
No 8
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=37.96 E-value=63 Score=27.31 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=19.2
Q ss_pred CCCCCChHHHHHHHHHHhCcEEcC
Q 022148 50 LPKHCDNNEVLKALCAEAGWVVEE 73 (302)
Q Consensus 50 Lpk~~d~nevlkaL~~eaGw~ve~ 73 (302)
+|+..|..+|.+.|.++.|..|-+
T Consensus 329 ~~~~~~~~~l~~~l~~~~gi~v~~ 352 (411)
T 3nnk_A 329 IPQGINGDQARKLMLEDFGIEIGT 352 (411)
T ss_dssp CCTTCCHHHHHHHHHHHHSEEEEE
T ss_pred CCCCCCHHHHHHHHHHhcCeEEeC
Confidence 455667889999998888998864
No 9
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=37.92 E-value=41 Score=28.52 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCC--------------C-ChHHHHHHHHHHhCcEEc
Q 022148 25 RRRERRRRAIAAKIYTGLRAQGNYNLPKH--------------C-DNNEVLKALCAEAGWVVE 72 (302)
Q Consensus 25 k~RERrRRAIaakIfaGLR~~gny~Lpk~--------------~-d~nevlkaL~~eaGw~ve 72 (302)
+++.+||++++.++..+|+..+ +.+|.. . |..+|.++| .+.|..|-
T Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~ 307 (373)
T 3frk_A 247 DKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYL-NNNGIGTL 307 (373)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEESSHHHHHHHH-HHTTBCCB
T ss_pred HHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHH-HHCCCCcc
Confidence 4456677889999999999887 666532 1 345566555 45587664
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=36.74 E-value=18 Score=27.15 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=18.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhc
Q 022148 19 RERENNRRRERRRRAIAAKIYTGLRAQ 45 (302)
Q Consensus 19 rErEnnk~RERrRRAIaakIfaGLR~~ 45 (302)
.-|++...|||+||.=.-.-|..||..
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~ 30 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRM 30 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHH
Confidence 446777889999998777778888764
No 11
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=36.67 E-value=62 Score=27.38 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=20.1
Q ss_pred CCCCCCCChHHHHHHHHHHhCcEEcC
Q 022148 48 YNLPKHCDNNEVLKALCAEAGWVVEE 73 (302)
Q Consensus 48 y~Lpk~~d~nevlkaL~~eaGw~ve~ 73 (302)
+.+|+..|..++.+.|.+++|..|-+
T Consensus 327 ~~~~~~~~~~~l~~~L~~~~gi~v~~ 352 (416)
T 3isl_A 327 VEIPGGIDGESVRDMLLAQFGIEIAS 352 (416)
T ss_dssp EECCTTCCHHHHHHHHHHHHCEECBC
T ss_pred EeCCCCCCHHHHHHHHHHhCCEEEec
Confidence 34555667889999998888988874
No 12
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.81 E-value=76 Score=23.21 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=30.7
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCChHHHHHH
Q 022148 18 WRERENNRRRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLKA 62 (302)
Q Consensus 18 ~rErEnnk~RERrRRAIaakIfaGLR~~gny~Lpk~~d~nevlka 62 (302)
..-|.+-..+||+||.--..-|.-||.+=-.......+--++|+.
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~ 54 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDK 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHH
Confidence 345777888999999988888888887532211134566666654
No 13
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=34.59 E-value=22 Score=30.55 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCC-----CCCChHHHHHHHHHHhCcEEcCCCccc
Q 022148 25 RRRERRRRAIAAKIYTGLRAQGNYNLP-----KHCDNNEVLKALCAEAGWVVEEDGTTY 78 (302)
Q Consensus 25 k~RERrRRAIaakIfaGLR~~gny~Lp-----k~~d~nevlkaL~~eaGw~ve~dGtty 78 (302)
...+|=|..|+.-|-. +|-...|. =+-|+.+=+...|.+.||.++ ||..|
T Consensus 171 ~l~~~vR~~~l~~i~k---aY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~-dg~i~ 225 (229)
T 4b0z_A 171 IVMSMVRNEIATCAEK---VYSEIPLSNATSLLYLENTKETEKLAEERGWDIR-DGVIY 225 (229)
T ss_dssp HHHHHHHHHHHHHHHH---HCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEE-TTEEE
T ss_pred HHHHHHHHHHHHHHHH---HcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEe-CCEEe
Confidence 3456667777777753 34322222 245677778889999999997 88776
No 14
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=34.11 E-value=83 Score=26.46 Aligned_cols=23 Identities=9% Similarity=-0.084 Sum_probs=16.7
Q ss_pred CCCCChHHHHHHHHHHhCcEEcC
Q 022148 51 PKHCDNNEVLKALCAEAGWVVEE 73 (302)
Q Consensus 51 pk~~d~nevlkaL~~eaGw~ve~ 73 (302)
|...|..++.+.|.++.|..|-+
T Consensus 323 ~~~~~~~~~~~~L~~~~gi~v~~ 345 (393)
T 2huf_A 323 PQGVDWLKAAQYAMKTYLVEISG 345 (393)
T ss_dssp CTTCCHHHHHHHHHHHHCEECBC
T ss_pred CCCCCHHHHHHHHHHhCCEEEec
Confidence 33346678888888888988864
No 15
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.77 E-value=97 Score=22.66 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=28.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCChHHHHHH
Q 022148 21 RENNRRRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLKA 62 (302)
Q Consensus 21 rEnnk~RERrRRAIaakIfaGLR~~gny~Lpk~~d~nevlka 62 (302)
|.+-..+||+||.--..-|.-||..=-.-.....+-.++|+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~ 44 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDK 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Confidence 677888999999887888888887521111234666666654
No 16
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=31.43 E-value=17 Score=24.23 Aligned_cols=11 Identities=64% Similarity=0.706 Sum_probs=8.9
Q ss_pred HHHHHHHHHHH
Q 022148 28 ERRRRAIAAKI 38 (302)
Q Consensus 28 ERrRRAIaakI 38 (302)
-+|-|.||+||
T Consensus 14 ~~RaRQIaAKi 24 (31)
T 2kxh_B 14 LQRARQIAAKI 24 (31)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 35678999998
No 17
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=31.09 E-value=88 Score=27.13 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=18.8
Q ss_pred CCCCCCChHHHHHHHHHHhCcEEcC
Q 022148 49 NLPKHCDNNEVLKALCAEAGWVVEE 73 (302)
Q Consensus 49 ~Lpk~~d~nevlkaL~~eaGw~ve~ 73 (302)
.+|...|..++.+.|.+++|..|.+
T Consensus 342 ~~~~~~~~~~l~~~l~~~~gi~v~~ 366 (404)
T 2o1b_A 342 ETPPGYDSEQFEQFLVQEKSILVAP 366 (404)
T ss_dssp ECCTTCCHHHHHHHHHHHHCEECEE
T ss_pred eCCCCCCHHHHHHHHHHHCCEEEeC
Confidence 4555556678899988899998864
No 18
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=29.39 E-value=46 Score=27.34 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCcEEcCCC
Q 022148 58 EVLKALCAEAGWVVEEDG 75 (302)
Q Consensus 58 evlkaL~~eaGw~ve~dG 75 (302)
|--|+|.+||||....||
T Consensus 102 ~kAk~LL~eaG~~~~~~g 119 (258)
T 3lvu_A 102 RRAAQFLEQAGFRIEQGQ 119 (258)
T ss_dssp HHHHHHHHHTTCEEETTE
T ss_pred HHHHHHHHHcCCEeCCCc
Confidence 566789999999976555
No 19
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=28.73 E-value=1.1e+02 Score=22.38 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCChHHHHHHHHHHhCcEEcCCCccccC
Q 022148 23 NNRRRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRK 80 (302)
Q Consensus 23 nnk~RERrRRAIaakIfaGLR~~gny~Lpk~~d~nevlkaL~~eaGw~ve~dGttyr~ 80 (302)
..++++++|++|...-..=+..+|--+ .- ++.+|++||-- -||-|+.
T Consensus 6 ~~~r~~~tr~~Il~aa~~l~~~~G~~~----~t----v~~Ia~~agvs---~~t~Y~~ 52 (177)
T 3kkc_A 6 KDRQIQKTKVAIYNAFISLLQENDYSK----IT----VQDVIGLANVG---RSTFYSH 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCTTT----CC----HHHHHHHHCCC---HHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCChhH----hh----HHHHHHHhCCc---HhhHHHH
Confidence 456677777777666555555655323 22 45577888854 4677774
No 20
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=27.35 E-value=1.2e+02 Score=25.71 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCC
Q 022148 26 RRERRRRAIAAKIYTGLRAQGNYNLP 51 (302)
Q Consensus 26 ~RERrRRAIaakIfaGLR~~gny~Lp 51 (302)
.+.+||++++.++..+|+..| +.+|
T Consensus 247 ~~~~~~~~~~~~~~~~L~~~~-~~~~ 271 (367)
T 3nyt_A 247 EEIALRQKVAAEYDLSLKQVG-IGTP 271 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CCCC
T ss_pred HHHHHHHHHHHHHHHHhccCC-eecc
Confidence 445667788888888998875 5544
No 21
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=26.55 E-value=65 Score=24.05 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCCCChHHHHHHHHHHhCcEEcCCCccccC
Q 022148 26 RRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRK 80 (302)
Q Consensus 26 ~RERrRRAIaakIfaGLR~~gny~Lpk~~d~nevlkaL~~eaGw~ve~dGttyr~ 80 (302)
+++++|++|-..-..=+..+|--+ .. ++.+|++||. .-||.|+.
T Consensus 13 ~~~~~r~~Il~aa~~l~~~~G~~~----~t----~~~Ia~~agv---s~~t~Y~~ 56 (211)
T 3him_A 13 GTSKAAARIRAAAIEVFAAKGYGA----TT----TREIAASLDM---SPGAVYPH 56 (211)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSTT----CC----HHHHHHHTTC---CTTSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCc----CC----HHHHHHHhCC---CcChhhhc
Confidence 344555566555444555555322 22 4567888886 56888874
No 22
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=25.58 E-value=1.3e+02 Score=22.69 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCChHHHHHHHHHHhCcEEcCCCccccC
Q 022148 23 NNRRRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRK 80 (302)
Q Consensus 23 nnk~RERrRRAIaakIfaGLR~~gny~Lpk~~d~nevlkaL~~eaGw~ve~dGttyr~ 80 (302)
+.+|.+++|++|-..-..=+..+|--.+ - ++.+|++||. .-||.|+.
T Consensus 13 ~~~r~~~~r~~Il~aA~~lf~~~G~~~~----t----~~~IA~~agv---s~~tlY~~ 59 (216)
T 3qqa_A 13 PSQKVLARQEKIKAVALELFLTKGYQET----S----LSDIIKLSGG---SYSNIYDG 59 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTTC----C----HHHHHHHHTT---SCCSSSCS
T ss_pred CCcccHHHHHHHHHHHHHHHHHcChhhC----C----HHHHHHHhCC---CHHHHHHh
Confidence 3566677777776665555666664332 2 5568888886 45788874
No 23
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=25.19 E-value=1.1e+02 Score=23.34 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCC
Q 022148 26 RRERRRRAIAAKIYTGLRAQGNYNLP 51 (302)
Q Consensus 26 ~RERrRRAIaakIfaGLR~~gny~Lp 51 (302)
+.+++|++|...-..=+..+| |++-
T Consensus 10 ~~~~~r~~Il~aA~~lf~~~G-~~~t 34 (196)
T 2qwt_A 10 DAARNRARVLEVAYDTFAAEG-LGVP 34 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-TTSC
T ss_pred hhhhHHHHHHHHHHHHHHhcC-CCCC
Confidence 345566667666666667777 5543
No 24
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=25.00 E-value=84 Score=28.95 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCC----------------CChHHHHHHHHHHhCcEE
Q 022148 22 ENNRRRERRRRAIAAKIYTGLRAQGNYNLPKH----------------CDNNEVLKALCAEAGWVV 71 (302)
Q Consensus 22 Ennk~RERrRRAIaakIfaGLR~~gny~Lpk~----------------~d~nevlkaL~~eaGw~v 71 (302)
|.-+.+-++..+.+.++..+|+++|++.+-.. .+..+|.++| .+.||+|
T Consensus 338 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L-~~~Gi~v 402 (502)
T 3hbx_A 338 EGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDML-RRYGWIV 402 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHH-HTTTCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHH-HhCCcEE
Confidence 33345556666788899999999997654211 1112555554 6789988
No 25
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=23.50 E-value=82 Score=23.42 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCChHHHHHHHHHHhCcEEcCCCccccC
Q 022148 25 RRRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRK 80 (302)
Q Consensus 25 k~RERrRRAIaakIfaGLR~~gny~Lpk~~d~nevlkaL~~eaGw~ve~dGttyr~ 80 (302)
++++.+|++|-..-..=+..+|--++. ++.+|++||. .-||.|+.
T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~t--------i~~Ia~~agv---s~~t~Y~~ 54 (203)
T 3f1b_A 10 LPRAVREQQMLDAAVDVFSDRGFHETS--------MDAIAAKAEI---SKPMLYLY 54 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTTCC--------HHHHHHHTTS---CHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCccccc--------HHHHHHHhCC---chHHHHHH
Confidence 345666677766666666777643322 4557788886 34777773
No 26
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=23.49 E-value=80 Score=29.38 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhhcCCCCCC----------CCCChHHHHHHHHHHhCcEEcCCCccc
Q 022148 31 RRAIAAKIYTGLRAQGNYNLP----------KHCDNNEVLKALCAEAGWVVEEDGTTY 78 (302)
Q Consensus 31 RRAIaakIfaGLR~~gny~Lp----------k~~d~nevlkaL~~eaGw~ve~dGtty 78 (302)
|.+|+..||.|.-.-.+-.+| ..--+-|--|+|.+||||....||-..
T Consensus 297 r~~i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~d~~kAk~LL~eAG~~~~~dG~~~ 354 (528)
T 3ry3_A 297 RQLLADQIMEGHAIPAYTGVQGLPWNNPDSAIKDGDIDKAKQILEQAGWQLNSQGTRE 354 (528)
T ss_dssp HHHHHHHHSTTCEEECSSTTTTSTTSCTTCCCCCSCHHHHHHHHHHTTCEECTTSSEE
T ss_pred HHHHHHHHhcCccccccCCCCCCCCCCCCcCcCCCCHHHHHHHHHHcCCccCCCCEEc
Confidence 667777888775432221122 112234567889999999887777544
No 27
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=23.39 E-value=1.7e+02 Score=25.22 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCcEEcCCCccccC
Q 022148 57 NEVLKALCAEAGWVVEEDGTTYRK 80 (302)
Q Consensus 57 nevlkaL~~eaGw~ve~dGttyr~ 80 (302)
.+.+..++.++|..|-+.|..|-.
T Consensus 357 ~~~~~~~l~~~gv~v~~~g~~~~~ 380 (423)
T 3ez1_A 357 ADRVVKLAEAAGVSLTPAGATYPA 380 (423)
T ss_dssp HHHHHHHHHHTTEECCCTTTTSST
T ss_pred HHHHHHHHHHCCcEEecCcccccC
Confidence 345556778999999887877753
No 28
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=22.57 E-value=1.6e+02 Score=24.80 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=17.8
Q ss_pred CChHHHHHHHHHHhCcEEcCCCccc
Q 022148 54 CDNNEVLKALCAEAGWVVEEDGTTY 78 (302)
Q Consensus 54 ~d~nevlkaL~~eaGw~ve~dGtty 78 (302)
.+..++.+.|.+++|..|.+ |..|
T Consensus 349 ~~~~~~~~~l~~~~gi~v~~-g~~~ 372 (407)
T 3nra_A 349 VAPAEFVKILRLQAGVVVTP-GTEF 372 (407)
T ss_dssp SCHHHHHHHHHHHHCEECEE-GGGT
T ss_pred CCHHHHHHHHHHhCCEEEeC-chhh
Confidence 45668888888899998875 4444
No 29
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=22.53 E-value=30 Score=25.77 Aligned_cols=12 Identities=33% Similarity=1.190 Sum_probs=10.0
Q ss_pred HHHHHHhCcEEc
Q 022148 61 KALCAEAGWVVE 72 (302)
Q Consensus 61 kaL~~eaGw~ve 72 (302)
+..|++.||++-
T Consensus 35 ~~YC~~kGwIiP 46 (60)
T 1ng7_A 35 RDYCEKKGWIVN 46 (60)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHHHHCCceec
Confidence 357999999994
No 30
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=22.41 E-value=97 Score=26.67 Aligned_cols=25 Identities=12% Similarity=-0.031 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHhCcEEcCCCccccC
Q 022148 55 DNNEVLKALCAEAGWVVEEDGTTYRK 80 (302)
Q Consensus 55 d~nevlkaL~~eaGw~ve~dGttyr~ 80 (302)
|..++.+ ++.+.|..|-+.+...|-
T Consensus 367 ~~~~~~~-~l~~~gi~v~~g~~~iRi 391 (418)
T 3rq1_A 367 SANAICE-ELKKEHIYVIALANGIRI 391 (418)
T ss_dssp THHHHHH-HHHHTTEECEECSSEEEE
T ss_pred CHHHHHH-HHHhCCEEEecCCCCeEE
Confidence 4556665 568999999886555554
No 31
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=22.20 E-value=1.7e+02 Score=24.55 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHhCcEEcC
Q 022148 55 DNNEVLKALCAEAGWVVEE 73 (302)
Q Consensus 55 d~nevlkaL~~eaGw~ve~ 73 (302)
|..++.+.|.+++|..|.+
T Consensus 316 ~~~~~~~~l~~~~gi~v~~ 334 (370)
T 2z61_A 316 DGREFAYKLLKEKFVALTP 334 (370)
T ss_dssp CHHHHHHHHHHHHCEECEE
T ss_pred CHHHHHHHHHHhCCEEEeC
Confidence 6678888888899998864
No 32
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=22.16 E-value=1.3e+02 Score=22.45 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCChHHHHHHHHHHhCcEEcCCCcccc
Q 022148 24 NRRRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYR 79 (302)
Q Consensus 24 nk~RERrRRAIaakIfaGLR~~gny~Lpk~~d~nevlkaL~~eaGw~ve~dGttyr 79 (302)
.++++++|++|-..-..=+..+|--++- ++.+|++||- .-||.|+
T Consensus 9 ~~~~~~~r~~Il~aa~~l~~~~G~~~~t--------i~~Ia~~agv---s~~t~Y~ 53 (220)
T 3lhq_A 9 KQQALETRQHILDVALRLFSQQGVSATS--------LAEIANAAGV---TRGAIYW 53 (220)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHCSTTCC--------HHHHHHHHTC---CHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHcCcccCC--------HHHHHHHhCC---Cceeehh
Confidence 4455667777766555556666633322 3446666664 3455665
No 33
>4gl8_A Oligopeptide ABC transporter oppaiv; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Borrelia burgdorferi B31}
Probab=21.86 E-value=43 Score=30.69 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCC----------ChHHHHHHHHHHhCc
Q 022148 31 RRAIAAKIYTGLRAQGNYNLPKHC----------DNNEVLKALCAEAGW 69 (302)
Q Consensus 31 RRAIaakIfaGLR~~gny~Lpk~~----------d~nevlkaL~~eaGw 69 (302)
|.+|...||.|.-.-.+.-+|... -+-|--|+|.+||||
T Consensus 315 r~~i~~~~~~g~~~pa~~~~p~~~~~~~~~~~~~~d~~kAk~LL~eAG~ 363 (529)
T 4gl8_A 315 RKTLTESVLNDSSIPTRRATPDYIDYSYKSNLSLFDAEMAKKLLADAGY 363 (529)
T ss_dssp HHHHHHHTTCSCCEECSCSSCCBTTBCCCCCCCSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCceeCccCCCCCCCccccccccccCHHHHHHHHHHhhh
Confidence 334556677776544444444322 134667889999999
No 34
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=21.62 E-value=1.8e+02 Score=25.06 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=19.7
Q ss_pred CCCCCC---ChHHHHHHHHHHhCcEEcCCCccc
Q 022148 49 NLPKHC---DNNEVLKALCAEAGWVVEEDGTTY 78 (302)
Q Consensus 49 ~Lpk~~---d~nevlkaL~~eaGw~ve~dGtty 78 (302)
.+|... |..++.+.|.+++|..|-+ |..|
T Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~f 365 (412)
T 2x5d_A 334 KIPEPYAHLGSLEFAKKLLQDAKVSVSP-GIGF 365 (412)
T ss_dssp ECCTTTGGGCHHHHHHHHHHHHCEECEE-GGGG
T ss_pred EcCCccCCCCHHHHHHHHHHHCCEEEeC-chhh
Confidence 455443 6678888888889988864 4334
No 35
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=21.21 E-value=1.2e+02 Score=26.18 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=17.7
Q ss_pred CCCCCChHHHHHHHHHHhCcEEcCC
Q 022148 50 LPKHCDNNEVLKALCAEAGWVVEED 74 (302)
Q Consensus 50 Lpk~~d~nevlkaL~~eaGw~ve~d 74 (302)
+| ..|..++.+.|.++.|..|-+.
T Consensus 375 ~~-~~~~~~~~~~l~~~~gi~v~~g 398 (430)
T 2x5f_A 375 VH-DVDPEALRKHLIDKYSIGVIAL 398 (430)
T ss_dssp ES-SSCHHHHHHHHHHHHCEECEEC
T ss_pred CC-CCCHHHHHHHHHHhCCEEEecC
Confidence 44 3466778888877799998774
No 36
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=20.86 E-value=1.1e+02 Score=25.02 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCC-----------------CCCCChHHHHHHHHHHhCcEEcC
Q 022148 25 RRRERRRRAIAAKIYTGLRAQGNYNL-----------------PKHCDNNEVLKALCAEAGWVVEE 73 (302)
Q Consensus 25 k~RERrRRAIaakIfaGLR~~gny~L-----------------pk~~d~nevlkaL~~eaGw~ve~ 73 (302)
+++.++.++.+.++..+|+++.++++ |. |..++.++|.++ |..|-+
T Consensus 265 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~-gi~~~~ 327 (362)
T 3ffr_A 265 DGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--LPGEINKILEPF-DMAVGA 327 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--CHHHHHHHHGGG-TEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--CHHHHHHHHHHC-CeEEec
Confidence 34445556677777788877733322 22 667777777666 998864
No 37
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=20.67 E-value=95 Score=23.15 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCChHHHHHHHHHHhCcEEcCCCcccc
Q 022148 24 NRRRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYR 79 (302)
Q Consensus 24 nk~RERrRRAIaakIfaGLR~~gny~Lpk~~d~nevlkaL~~eaGw~ve~dGttyr 79 (302)
+.+++++|++|-..-+.=+..+|--.+ . ++.+|++||.- -|+.|+
T Consensus 3 ~~~~~~~r~~Il~aA~~l~~~~G~~~~----t----~~~IA~~Agvs---~~tly~ 47 (194)
T 3dpj_A 3 AMVQAQTRDQIVAAADELFYRQGFAQT----S----FVDISAAVGIS---RGNFYY 47 (194)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHCTTTC----C----HHHHHHHHTCC---HHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHcCcccC----C----HHHHHHHHCCC---hHHHHH
Confidence 455677777776666666666663332 2 34567777753 366665
No 38
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=20.25 E-value=2.1e+02 Score=23.87 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCC-------------CCCCChHHHHHHHHHHhCcEEcCC
Q 022148 27 RERRRRAIAAKIYTGLRAQGNYNL-------------PKHCDNNEVLKALCAEAGWVVEED 74 (302)
Q Consensus 27 RERrRRAIaakIfaGLR~~gny~L-------------pk~~d~nevlkaL~~eaGw~ve~d 74 (302)
+.++.++.+.++...|+++| +.+ |...|..+|.+.|.+++|..|.+.
T Consensus 279 ~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g 338 (376)
T 3f0h_A 279 EVARIASQAADFRAKIKDLP-FELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPN 338 (376)
T ss_dssp HHHHHHHHHHHHHHHTTTSS-EEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEEC
T ss_pred HHHHHHHHHHHHHHHHHHcC-CccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecC
Confidence 34444566777777887765 211 223466788888887779888643
No 39
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=20.20 E-value=43 Score=23.32 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=30.3
Q ss_pred HHHHhhhhc-C----CCCCCCCCChHHHHHHHHHH----hCc--EEcCCCccccC
Q 022148 37 KIYTGLRAQ-G----NYNLPKHCDNNEVLKALCAE----AGW--VVEEDGTTYRK 80 (302)
Q Consensus 37 kIfaGLR~~-g----ny~Lpk~~d~nevlkaL~~e----aGw--~ve~dGttyr~ 80 (302)
|.|+.||.+ | .+.++.-+...|+|+.|..+ .+. .|.-+|..-..
T Consensus 4 ~~fa~lr~~~g~~~~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~ 58 (77)
T 2q5w_D 4 LYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQK 58 (77)
T ss_dssp ECCHHHHHHHTCSEEECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECT
T ss_pred EEeHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCC
Confidence 346666653 2 25677788999999999876 445 67777765544
Done!