BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022152
MSMGSDTGSTWVGKKPLRRIGGMSDALSIAADLGFSVAPPPSQEELQNLCANGEKGDDLI
RVLRELTAVQRKIADLQVELQGRKDDKNVAHLTHVSEMQKKIETLSRITTILKDVIQNKD
RIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQWSQSFKEPPSIWG
EMLRPIPVALASCTRFFEAMSAMRESFATLQHLRVGDSASSLPITPDNNSSQRVPGGSDC
VTPPPWTNESSLDDLVIRNLRRQELGRQEAEDAISEVSDLSQSDGTNNRRLSWPLQVKKS
GT

High Scoring Gene Products

Symbol, full name Information P value
AUG2
augmin subunit 2 		protein from Arabidopsis thaliana 3.0e-117

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022152
        (302 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2059390 - symbol:AUG2 "augmin subunit 2" speci...  1155  3.0e-117  1


>TAIR|locus:2059390 [details] [associations]
            symbol:AUG2 "augmin subunit 2" species:3702 "Arabidopsis
            thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0000910
            "cytokinesis" evidence=IMP] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0007020 "microtubule nucleation" evidence=IMP]
            [GO:0007067 "mitosis" evidence=IMP] EMBL:CP002685 GO:GO:0007067
            GO:GO:0000910 EMBL:AC003033 GO:GO:0007020 EMBL:AF439838
            EMBL:AY125566 IPI:IPI00520105 PIR:T01109 RefSeq:NP_565760.1
            UniGene:At.12478 IntAct:O48767 PaxDb:O48767 PRIDE:O48767
            EnsemblPlants:AT2G32980.1 GeneID:817860 KEGG:ath:AT2G32980
            TAIR:At2g32980 eggNOG:NOG315028 InParanoid:O48767 OMA:TPPWRNE
            PhylomeDB:O48767 ProtClustDB:CLSN2688650 ArrayExpress:O48767
            Genevestigator:O48767 Uniprot:O48767
        Length = 296

 Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
 Identities = 235/301 (78%), Positives = 252/301 (83%)

Query:     1 MSMGSDTGSTWVGKKPLRRIGGMSDALSIAADLGFSVAPPPSQEELQNLCA-NGEKGDDL 59
             MSMG DT  TWVGKKP+RRIGG+SDALSIA+DLGF+VAPPPSQEELQ+  + NGE+GDDL
Sbjct:     1 MSMGGDT--TWVGKKPIRRIGGLSDALSIASDLGFAVAPPPSQEELQSFASSNGERGDDL 58

Query:    60 IRVLRELTAVQRKIADLQVELQGRKDDKNVAHLTHVSEMQKKIETLSRITTILKDVIQNK 119
             IRVLREL+ VQRKIADLQVELQGRKDDKNVAHLTHV EMQKKIETLSRIT ILKDVIQNK
Sbjct:    59 IRVLRELSVVQRKIADLQVELQGRKDDKNVAHLTHVGEMQKKIETLSRITQILKDVIQNK 118

Query:   120 DRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQWSQSFKEPPSIW 179
             DRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASV+DFQWSQ+FKEPPS+W
Sbjct:   119 DRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVSDFQWSQNFKEPPSVW 178

Query:   180 GEMLRPIPVALASCTRFFEAMSAMRESFATLQHLRVGDSASSLPITPDNNSSQRVPGGSD 239
             GEMLRPIPVALASCTRFFEAMSAMRESFATLQ LRVG+SA SLP TP  N  +     SD
Sbjct:   179 GEMLRPIPVALASCTRFFEAMSAMRESFATLQELRVGNSAVSLPTTPGGN--EMTHRDSD 236

Query:   240 CVTPPPWTNESSLDDLVIRNLRRQELGRQEAEDAISEVSDLSQSDGTNNRRLSWPLQVKK 299
             CVTPP    ESS DDL +   RRQ   + E E+   E  D    +   NRRLSWP  VKK
Sbjct:   237 CVTPPQGRIESSFDDLAVHKTRRQNNDQNEEEEEEEEEED---GNNNGNRRLSWPPSVKK 293

Query:   300 S 300
             S
Sbjct:   294 S 294


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      302       302   0.00097  115 3  11 23  0.44    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  204 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.22u 0.12s 29.34t   Elapsed:  00:00:01
  Total cpu time:  29.22u 0.12s 29.34t   Elapsed:  00:00:01
  Start:  Sat May 11 08:04:46 2013   End:  Sat May 11 08:04:47 2013

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