BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022152
         (302 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
           Mouse Protein Disulfide-Isomerase A4
          Length = 120

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 104 TLSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSEL 148
           TLS       DV+ N D I+     P+   C  +  EY+K   EL
Sbjct: 9   TLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKEL 53


>pdb|1TR2|A Chain A, Crystal Structure Of Human Full-Length Vinculin (Residues
           1- 1066)
 pdb|1TR2|B Chain B, Crystal Structure Of Human Full-Length Vinculin (Residues
           1- 1066)
          Length = 1066

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 27/38 (71%)

Query: 45  ELQNLCANGEKGDDLIRVLRELTAVQRKIADLQVELQG 82
           ++  LC + ++ DD++R L E++A+  K+ADL+ + +G
Sbjct: 417 KIAELCDDPKERDDILRSLGEISALTSKLADLRRQGKG 454


>pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The
           Uroporphyrinogen-Iii Decarboxylase From Nicotiana
           Tabacum: Implications For The Catalytic Mechanism
          Length = 353

 Score = 28.1 bits (61), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/73 (21%), Positives = 34/73 (46%)

Query: 99  QKKIETLSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGA 158
           +K +  +    TIL+  + N+  ++  +  P++L    VE    K F+++   A ++   
Sbjct: 124 EKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKV 183

Query: 159 LTASVADFQWSQS 171
           L A +  F  S +
Sbjct: 184 LHALLQKFATSMA 196


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,591,016
Number of Sequences: 62578
Number of extensions: 316411
Number of successful extensions: 720
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 7
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)