Query 022152
Match_columns 302
No_of_seqs 51 out of 53
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 14:47:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r84_A Mediator of RNA polymer 60.9 17 0.0006 28.6 5.7 38 96-133 1-38 (86)
2 1uru_A Amphiphysin; endocytosi 52.0 34 0.0012 28.7 6.5 60 103-162 180-239 (244)
3 1y1u_A Signal transducer and a 37.5 2.6E+02 0.0091 28.3 11.4 99 98-217 77-176 (585)
4 2fic_A Bridging integrator 1; 35.3 54 0.0018 28.0 5.2 56 105-160 195-250 (251)
5 2kk1_A Tyrosine-protein kinase 30.9 13 0.00044 31.7 0.5 37 180-216 60-106 (135)
6 4gwp_A Mediator of RNA polymer 28.6 2.2E+02 0.0075 23.6 7.5 85 94-188 2-86 (115)
7 2l5g_B Putative uncharacterize 27.0 18 0.00062 25.4 0.7 18 63-80 8-25 (42)
8 3zrx_A AF1503 protein, osmolar 27.0 1.5E+02 0.0052 20.2 7.8 55 60-122 8-63 (115)
9 1m46_B IQ4, IQ4 motif from MYO 25.3 34 0.0012 21.6 1.6 15 61-75 1-15 (26)
10 4fla_A Regulation of nuclear P 24.0 2.9E+02 0.0098 23.2 7.7 59 69-127 44-106 (152)
11 4ev6_A Magnesium transport pro 20.9 4.5E+02 0.015 23.5 9.8 33 98-130 195-227 (339)
No 1
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=60.93 E-value=17 Score=28.56 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhccccCC
Q 022152 96 SEMQKKIETLSRITTILKDVIQNKDRIIARLQQPYSLD 133 (302)
Q Consensus 96 ~~L~kK~e~LQ~mnsHLeaVLkeK~~LrqRLqkP~~~e 133 (302)
.|++++.++|..+..-+-.+|++=...+.-|-.|..++
T Consensus 1 ~~iqERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~ 38 (86)
T 3r84_A 1 GYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGN 38 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 38899999999999999999999999999999998775
No 2
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=52.05 E-value=34 Score=28.74 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHhccccCCCcchhhhhhHHHHHHHHHHHhHHHHHHHh
Q 022152 103 ETLSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTAS 162 (302)
Q Consensus 103 e~LQ~mnsHLeaVLkeK~~LrqRLqkP~~~enLPVEA~yHR~vVeLL~lavsfIe~Lee~ 162 (302)
+....+|..|..=|..=..++.....|.....+-+++.||+.+++++..+...+.+|...
T Consensus 180 ~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l~~~ 239 (244)
T 1uru_A 180 RTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATE 239 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445578888888888888888888899999999999999999999999999999998876
No 3
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=37.50 E-value=2.6e+02 Score=28.35 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=55.6
Q ss_pred HHHHHHHHHH-HHHHHHHHhhchHHHHHHHhccccCCCcchhhhhhHHHHHHHHHHHhHHHHHHHhHhhhhhcccccCCC
Q 022152 98 MQKKIETLSR-ITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQWSQSFKEPP 176 (302)
Q Consensus 98 L~kK~e~LQ~-mnsHLeaVLkeK~~LrqRLqkP~~~enLPVEA~yHR~vVeLL~lavsfIe~Lee~Le~I~W~snF~~~~ 176 (302)
+.+|.+.+++ ++.-+..+.++|.+|+..+++ .+.+++.+.+.+ |.+.|....+-|..---.
T Consensus 77 ~~~~~~~~~~~lq~~~~~L~~~R~~l~~~~~~----------------~l~~~~~lq~~l--l~~eL~~WKrrQq~a~iG 138 (585)
T 1y1u_A 77 LQQKQVSLETWLQREAQTLQQYRVELAEKHQK----------------TLQLLRKQQTII--LDDELIQWKRRQQLAGNG 138 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH--HHTHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC
Confidence 5555554433 444455566666555443332 233333333332 333344444444443333
Q ss_pred CcccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcC
Q 022152 177 SIWGEMLRPIPVALASCTRFFEAMSAMRESFATLQHLRVGD 217 (302)
Q Consensus 177 ~~~~~~Lr~Ip~alasc~~~~ea~s~~r~~~a~l~~~r~~~ 217 (302)
+--..+|+.|= .-|+..-|++-++|+-+..|.+++...
T Consensus 139 ~p~~~~LD~lQ---~w~e~lae~l~q~rqql~~l~~l~~~~ 176 (585)
T 1y1u_A 139 GPPEGSLDVLQ---SWCEKLAEIIWQNRQQIRRAEHLCQQL 176 (585)
T ss_dssp CCCCCCTHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 33467888873 357888888889999998888888753
No 4
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=35.35 E-value=54 Score=27.98 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhccccCCCcchhhhhhHHHHHHHHHHHhHHHHHH
Q 022152 105 LSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALT 160 (302)
Q Consensus 105 LQ~mnsHLeaVLkeK~~LrqRLqkP~~~enLPVEA~yHR~vVeLL~lavsfIe~Le 160 (302)
...+|+.|..=|..=-.++.-+..|.-...+-++..||+.+.+++..+...+.+|.
T Consensus 195 ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~~~~ 250 (251)
T 2fic_A 195 FEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLE 250 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34667777777777777777777888888899999999999998888877776654
No 5
>2kk1_A Tyrosine-protein kinase ABL2; methods development, tyrosin protein kinase ABL2, F-actin binding domain, NESG, alternative splicing, ATP-binding; NMR {Homo sapiens}
Probab=30.88 E-value=13 Score=31.69 Aligned_cols=37 Identities=24% Similarity=0.501 Sum_probs=28.1
Q ss_pred cccccchhhhhhhhhHHHHHHHHHHHHHH----------HHHHhhhc
Q 022152 180 GEMLRPIPVALASCTRFFEAMSAMRESFA----------TLQHLRVG 216 (302)
Q Consensus 180 ~~~Lr~Ip~alasc~~~~ea~s~~r~~~a----------~l~~~r~~ 216 (302)
...++.++..+..|+.|-+++.+||.-|| +||+||+-
T Consensus 60 S~v~d~~h~L~~~C~~yvD~i~q~rnKFaFREavsrLe~slqeL~~~ 106 (135)
T 2kk1_A 60 SQLVDTGHQLLDYCSGYVDCIPQTRNKFAFREAVSKLELSLQELQVS 106 (135)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHhhhhHHhhcccchhcccchhhHHHHHHHHHHHHHHHHHhccC
Confidence 34477778889999999998888754443 67888875
No 6
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=28.57 E-value=2.2e+02 Score=23.57 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=58.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhccccCCCcchhhhhhHHHHHHHHHHHhHHHHHHHhHhhhhhccccc
Q 022152 94 HVSEMQKKIETLSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQWSQSFK 173 (302)
Q Consensus 94 H~~~L~kK~e~LQ~mnsHLeaVLkeK~~LrqRLqkP~~~enLPVEA~yHR~vVeLL~lavsfIe~Lee~Le~I~W~snF~ 173 (302)
.|.|.++|.++|..+..-|=++|++=..++..+..|.-+.. .+..+|...+. .||..|+.- ++.-.++-+
T Consensus 2 qp~~VqERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~-~~K~qF~~~~~-------~fY~~Ls~~--a~~LRkEIK 71 (115)
T 4gwp_A 2 QPPYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNE-SVKPQFENHVK-------QFYERLDKS--TTQLRKEIQ 71 (115)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHH-------HHHHHHHHH--HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cchHHHHHHHH-------HHHHHHHHH--HHHHHHHHH
Confidence 47899999999999999999999999999999999887774 44555554433 344444433 233333334
Q ss_pred CCCCcccccccchhh
Q 022152 174 EPPSIWGEMLRPIPV 188 (302)
Q Consensus 174 ~~~~~~~~~Lr~Ip~ 188 (302)
.=+.++|.+|=||.+
T Consensus 72 ~lDeNiG~~lLPInV 86 (115)
T 4gwp_A 72 LLDENVGTRLLPINV 86 (115)
T ss_dssp HHHHHHHSSSSCCSS
T ss_pred HHhhccCceEecccc
Confidence 444466777878854
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.02 E-value=18 Score=25.40 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhcccce
Q 022152 63 LRELTAVQRKIADLQVEL 80 (302)
Q Consensus 63 LrQIT~lQ~eLdq~nLEI 80 (302)
|++|..+-+||+++.-+|
T Consensus 8 ~qkI~kVdrEI~Kte~kI 25 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQI 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777888888776655
No 8
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=27.01 E-value=1.5e+02 Score=20.21 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhhcccceeeecccccccccc-ChhHHHHHHHHHHHHHHHHHHHhhchHHH
Q 022152 60 IRVLRELTAVQRKIADLQVELQGRKDDKNVAHLT-HVSEMQKKIETLSRITTILKDVIQNKDRI 122 (302)
Q Consensus 60 ~s~LrQIT~lQ~eLdq~nLEIelLKlDKeTADlt-H~~~L~kK~e~LQ~mnsHLeaVLkeK~~L 122 (302)
++-|++++..-.+|.+-++.... ++. ..++++.-...+..|...|+..++++..+
T Consensus 8 ~~pl~~l~~~~~~i~~gdl~~~~--------~~~~~~dEi~~l~~~~n~m~~~l~~~~~~~~~~ 63 (115)
T 3zrx_A 8 TRPIIELSNTFDKIAEGNLEAEV--------PHQNRADEIGILAKSIERLRRSLKQLADDRTLL 63 (115)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCC--------TTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccccC--------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777765554321 222 45788899999999999999998875543
No 9
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=25.34 E-value=34 Score=21.61 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhh
Q 022152 61 RVLRELTAVQRKIAD 75 (302)
Q Consensus 61 s~LrQIT~lQ~eLdq 75 (302)
++||-||++|+.|.+
T Consensus 1 svlrtitnlqkkirk 15 (26)
T 1m46_B 1 SVLRTITNLQKKIRK 15 (26)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 468899999887764
No 10
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=23.99 E-value=2.9e+02 Score=23.20 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=40.2
Q ss_pred HHHHHhhcccceeeeccccccccccChhHHHH----HHHHHHHHHHHHHHHhhchHHHHHHHh
Q 022152 69 VQRKIADLQVELQGRKDDKNVAHLTHVSEMQK----KIETLSRITTILKDVIQNKDRIIARLQ 127 (302)
Q Consensus 69 lQ~eLdq~nLEIelLKlDKeTADltH~~~L~k----K~e~LQ~mnsHLeaVLkeK~~LrqRLq 127 (302)
++++|.++=.|++-...=+..-|-.+...|.+ -|..|...|.=|++=++.+..|.+=|.
T Consensus 44 vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~ 106 (152)
T 4fla_A 44 VRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLV 106 (152)
T ss_dssp HHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777666555555556555555544 467788888888888888887766554
No 11
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=20.95 E-value=4.5e+02 Score=23.50 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHhccc
Q 022152 98 MQKKIETLSRITTILKDVIQNKDRIIARLQQPY 130 (302)
Q Consensus 98 L~kK~e~LQ~mnsHLeaVLkeK~~LrqRLqkP~ 130 (302)
.-++...|+.-...|...+..++++..+|.+..
T Consensus 195 ~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~ 227 (339)
T 4ev6_A 195 VMEKILGLRKTLVYFHKSLIANRDVLVLLKRKY 227 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcc
Confidence 345566677777788888888888999998754
Done!