BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022155
(302 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKM5|XRCC3_ARATH DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana GN=XRCC3
PE=1 SV=1
Length = 304
Score = 358 bits (920), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 177/304 (58%), Positives = 226/304 (74%), Gaps = 13/304 (4%)
Query: 5 MTPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQL 64
+ P+NLL T K T GC I+D CL GGI C+S+TE+VAESG GKTQ CLQL+L QL
Sbjct: 6 IKPENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQL 65
Query: 65 PSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSN-------DHNPCDYIFVQSVHSVD 117
P SHGGL+ SSLYLH+EFPFP RRLHQLSHTF SN + NPCD++FVQ+VHSVD
Sbjct: 66 PISHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVD 125
Query: 118 QLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGML 177
L DIMP+I+ F+ NS +R P++LIV+DS+AALFRS+FDNT DLKKRS LFFKISG L
Sbjct: 126 HLFDIMPRIDGFVGNS-KTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKL 184
Query: 178 KAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSR 237
K +A F LA+++TNQV DL+E ++G++GLR+GNL LYSSGR + P+LG+AWANCVNSR
Sbjct: 185 KQLASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSR 244
Query: 238 LFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGV 297
F+SR++ +V++ + S V R +R L +VF+P+L +SCEF ITREG+
Sbjct: 245 FFISRSDGSIVKDRSEKDENCSSS-----VSRSAKRRLDIVFSPYLPGSSCEFMITREGI 299
Query: 298 FGVE 301
V+
Sbjct: 300 CAVQ 303
>sp|Q9CXE6|XRCC3_MOUSE DNA repair protein XRCC3 OS=Mus musculus GN=Xrcc3 PE=2 SV=1
Length = 349
Score = 147 bits (372), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 152/296 (51%), Gaps = 37/296 (12%)
Query: 14 PLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSA 73
P ++ ++GCP++D+ LGGG+P IT L S +GKTQ LQL L+ Q P +GGL A
Sbjct: 76 PEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQFPRQYGGLEA 135
Query: 74 SSLYLHTEFPFPMRRLHQLSHTFRPSNDHNP---------CDYIFVQSVHSVDQLLDIMP 124
++Y+ TE FP +RL QL R P ++IF++ VD LL+ +
Sbjct: 136 GAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSNHIFIEHAADVDTLLECVS 195
Query: 125 KIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGF 184
K + SR RL+V+DSIAA FR +F + R+ L + L+ ++ F
Sbjct: 196 KKVPILL----SRGMARLVVVDSIAAPFRCEFHLQASAI--RAKLLLSLGATLRRLSSTF 249
Query: 185 GLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNE 244
VL NQV D++E + V+ +LG +S + PALGI WAN + RL + R
Sbjct: 250 RSPVLCINQVTDMVEDQQSVS----RSLG---ASEERLSPALGITWANQLLMRLMVDRTH 302
Query: 245 DFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGV 300
E+ + G + R R+L V+FAPHL +SC + ++ EG+ G+
Sbjct: 303 -----EDDVTTG----------LPRSPVRTLRVLFAPHLPLSSCCYTVSGEGIRGM 343
>sp|O43542|XRCC3_HUMAN DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 PE=1 SV=1
Length = 346
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 144/296 (48%), Gaps = 40/296 (13%)
Query: 14 PLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSA 73
P ++ ++GCP++D L GG+P + ITEL S +GKTQ LQL L+ Q P HGGL A
Sbjct: 76 PTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEA 135
Query: 74 SSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDY---------IFVQSVHSVDQLLDIMP 124
++Y+ TE FP +RL QL P + IF++ V VD LL+ +
Sbjct: 136 GAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVN 195
Query: 125 KIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGF 184
K + SR RL+VIDS+AA FR +FD+ + R + L+ ++ F
Sbjct: 196 KKVPVLL----SRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQ--SLGATLRELSSAF 249
Query: 185 GLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNE 244
VL NQV + ME + G LG + R + PALGI WAN + RL R
Sbjct: 250 QSPVLCINQVTEAMEEQGAAH----GPLG--FWDER-VSPALGITWANQLLVRLLADR-- 300
Query: 245 DFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGV 300
+RE + G R+L V+ APHL +SC + I+ EGV G
Sbjct: 301 ---LREEEAALGCPA-------------RTLRVLSAPHLPPSSCSYTISAEGVRGT 340
>sp|Q08DH8|XRCC3_BOVIN DNA repair protein XRCC3 OS=Bos taurus GN=XRCC3 PE=2 SV=1
Length = 341
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 142/297 (47%), Gaps = 47/297 (15%)
Query: 14 PLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSA 73
P ++ ++GCP++D L GG+P + ITEL S +GKTQ LQL L+ QLP HGGL A
Sbjct: 76 PEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQLPPRHGGLGA 135
Query: 74 SSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDY---------IFVQSVHSVDQLLD-IM 123
++Y+ TE FP RRL QL + P IF++ VD LL +
Sbjct: 136 GAVYVCTEDAFPSRRLQQLIAQQQRLRADVPGHVISKIRFGHQIFIEHAADVDTLLQCVR 195
Query: 124 PKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVG 183
K+ + +R RL+VIDS+AA FR +FD L+ + L + L+ ++
Sbjct: 196 EKVPVLL-----ARGMARLVVIDSVAAPFRCEFDGAALALRAQRLL--ALGAELRRLSCA 248
Query: 184 FGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRN 243
F VL NQV + +E + V G G + PALGI WAN + RL R
Sbjct: 249 FRSPVLCVNQVTEAVEEQDLVAG----------PPG--MSPALGITWANQLLVRLLADRQ 296
Query: 244 EDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGV 300
E + G R+L VVFAPHL +SC + I EGV G+
Sbjct: 297 RP---EEAPLTPPG---------------RTLRVVFAPHLPASSCSYTIAAEGVRGM 335
>sp|O35719|RA51B_MOUSE DNA repair protein RAD51 homolog 2 OS=Mus musculus GN=Rad51b PE=2
SV=2
Length = 350
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 27/231 (11%)
Query: 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86
+D L GG+PC S+TE+ G GKTQFC+ +++ A LP+S GGL + +Y+ TE F
Sbjct: 90 LDEALHGGVPCGSLTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVYIDTESAFTA 149
Query: 87 RRLHQLSHTFRPSNDHNPCDYIFVQS-VHSVDQLL--DIMPKIESFIKNSSNSRLPIRLI 143
RL +++ + P + + S VH +L ++ ++ES + + ++L+
Sbjct: 150 ERLVEIAESRFPQYFNTEEKLLLTSSRVHLCRELTCEGLLQRLESLEEEIISK--GVKLV 207
Query: 144 VIDSIAALFRSDFDNTMD-DLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV-------- 194
++DSIA++ R +FD + ++K+R+ K + +LK +A F + V++TNQ+
Sbjct: 208 IVDSIASVVRKEFDPKLQGNIKERNKFLGKGASLLKYLAGEFSIPVILTNQITTHLSGAL 267
Query: 195 ---VDLMEPNEGVNGLRVGNLG--CLYSSGRPICPALGIAWANCVNSRLFL 240
DL+ P + ++ L G G CL + ALG W +CVN+RL L
Sbjct: 268 PSQADLVSPADDLS-LSEGTSGSSCLVA-------ALGNTWGHCVNTRLIL 310
>sp|B1YC14|RADA_PYRNV DNA repair and recombination protein RadA OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=radA PE=3 SV=1
Length = 330
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 23/230 (10%)
Query: 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASS 75
T + + G +D LGGGI ++TE+ E GSGKTQ C QL + QLP GGL A +
Sbjct: 95 TIRRISTGVKALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKA 154
Query: 76 LYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSN 135
+Y+ TE F R+ Q++ R + + IF +S D + ++ + +S IK ++
Sbjct: 155 IYIDTENTFRPERIMQIAKA-RGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIKQNN- 212
Query: 136 SRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVV 195
+ L+V+DS+ A FRS+F + +++ L ++ +L+ +A + +AV++TNQV
Sbjct: 213 ----VALLVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLR-LADAYDVAVVITNQV- 266
Query: 196 DLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245
+ +P+ + G P+ PA G A+ RL+L ++++
Sbjct: 267 -MAQPD------------VFF--GNPLRPAGGNILAHGATYRLWLRKSKE 301
>sp|P0CW91|RADA_AERPX DNA repair and recombination protein RadA OS=Aeropyrum pernix
GN=radA PE=3 SV=1
Length = 319
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 133/292 (45%), Gaps = 48/292 (16%)
Query: 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLP 65
T +L + +K T G +D LGGGI +ITEL E GSGKTQ C QL+++ QLP
Sbjct: 72 TAYDLKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLP 131
Query: 66 SSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPK 125
GGL ++Y+ TE F R+ Q++ D + ++++++S Q+ I+ K
Sbjct: 132 EDKGGLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIA-IVDK 190
Query: 126 IESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFG 185
+ + +KN + I+L+V+DS+ + FR++F ++L R L + L +A F
Sbjct: 191 LFTMVKNDN-----IKLVVVDSVTSHFRAEFPGR-ENLAMRQQLLNRHLHQLMRLADIFN 244
Query: 186 LAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245
+AV++TNQV + P+ Y G P G + R++L +
Sbjct: 245 VAVVITNQV--MARPD------------VFY--GDPTQAVGGHVLGHAPGVRVYLKK--- 285
Query: 246 FVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGV 297
R +R VV APHL + F IT G+
Sbjct: 286 ----------------------SRGNKRIARVVDAPHLPEGETVFAITEWGI 315
>sp|P0CW92|RADA_AERPE DNA repair and recombination protein RadA OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=radA PE=3 SV=1
Length = 319
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 133/292 (45%), Gaps = 48/292 (16%)
Query: 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLP 65
T +L + +K T G +D LGGGI +ITEL E GSGKTQ C QL+++ QLP
Sbjct: 72 TAYDLKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLP 131
Query: 66 SSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPK 125
GGL ++Y+ TE F R+ Q++ D + ++++++S Q+ I+ K
Sbjct: 132 EDKGGLEGKAVYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIA-IVDK 190
Query: 126 IESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFG 185
+ + +KN + I+L+V+DS+ + FR++F ++L R L + L +A F
Sbjct: 191 LFTMVKNDN-----IKLVVVDSVTSHFRAEFPGR-ENLAMRQQLLNRHLHQLMRLADIFN 244
Query: 186 LAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245
+AV++TNQV + P+ Y G P G + R++L +
Sbjct: 245 VAVVITNQV--MARPD------------VFY--GDPTQAVGGHVLGHAPGVRVYLKK--- 285
Query: 246 FVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGV 297
R +R VV APHL + F IT G+
Sbjct: 286 ----------------------SRGNKRIARVVDAPHLPEGETVFAITEWGI 315
>sp|A3MXX9|RADA_PYRCJ DNA repair and recombination protein RadA OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=radA PE=3 SV=1
Length = 332
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 23/227 (10%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ + G +D LGGGI ++TE+V E GSGKTQ C QL + QLP GGL A ++Y+
Sbjct: 100 RISTGVRALDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEDRGGLGAKAIYI 159
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
TE F R+ Q++ R + + IF +S D + ++ + +S I+ +
Sbjct: 160 DTENTFRPERIMQIAKA-RGLDPDQALNNIFYARAYSADHQMVLVEQAKSLIRQHN---- 214
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
+ L+V+DS+ A FR++F + +++ L I+ +L+ +A + +AV+VTNQV +
Sbjct: 215 -VALLVVDSVIAHFRAEFPGRENLAERQQKLNKHIADLLR-LADAYDVAVVVTNQV--MA 270
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245
+P+ + G P+ PA G A+ RL+L ++++
Sbjct: 271 QPD------------VFF--GNPLRPAGGNILAHGATYRLWLRKSKE 303
>sp|Q8ZYR9|RADA_PYRAE DNA repair and recombination protein RadA OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=radA PE=3 SV=1
Length = 333
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 23/227 (10%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ + G +D LGGGI ++TE+V E GSGKTQ C QL + QLP GGL A ++Y+
Sbjct: 101 RISTGVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYI 160
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
TE F R+ Q++ R + IF +S D + ++ + +S IK +
Sbjct: 161 DTENTFRPERIMQIAKA-RGLDSDQALHNIFYARAYSSDHQMILVEQAKSIIKQHN---- 215
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
+ L+V+DS+ A FRS+F + +++ L ++ +L+ +A + +AV++TNQV +
Sbjct: 216 -VALLVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLR-LADAYDVAVVITNQV--MA 271
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245
+P+ + G P+ PA G A+ RL+L ++++
Sbjct: 272 QPD------------VFF--GNPLRPAGGNILAHGATYRLWLRKSKE 304
>sp|A4WN87|RADA_PYRAR DNA repair and recombination protein RadA OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3
SV=1
Length = 333
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 23/227 (10%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ + G +D LGGGI ++TE+V E GSGKTQ C QL + QLP GGL A ++Y+
Sbjct: 101 RISTGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYI 160
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
TE F R+ Q++ R + + IF +S D + ++ +S +K +
Sbjct: 161 DTENTFRPERIMQMARA-RGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQHN---- 215
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
+ LIV+DS+ A FRS+F + +++ L ++ +L+ +A + +AV++TNQV +
Sbjct: 216 -VALIVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLR-LADAYDVAVVITNQV--MA 271
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245
+P+ + G P+ PA G A+ RL+L ++++
Sbjct: 272 QPD------------VFF--GNPLRPAGGNILAHGATYRLWLRKSKE 304
>sp|Q9UWR5|RADA_PYRIL DNA repair and recombination protein RadA OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=radA PE=3 SV=2
Length = 330
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 119/227 (52%), Gaps = 23/227 (10%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ + G +D LGGGI ++TE+ E GSGKTQ C QL + QLP GGL A ++Y+
Sbjct: 98 RISTGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYI 157
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
TE F R+ Q++ R + + IF +S D + ++ + +S I+ +
Sbjct: 158 DTENTFRPERIMQIAKA-RGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQHN---- 212
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
+ L+++DS+ A FRS+F + +++ L ++ +L+ +A + +AV++TNQV +
Sbjct: 213 -VALLIVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLR-LADAYDVAVVITNQV--MA 268
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245
+P+ + G P+ PA G A+ RL+L ++++
Sbjct: 269 QPD------------VFF--GNPLRPAGGNILAHGATYRLWLRKSKE 301
>sp|O15315|RA51B_HUMAN DNA repair protein RAD51 homolog 2 OS=Homo sapiens GN=RAD51B PE=1
SV=2
Length = 384
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 23/229 (10%)
Query: 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86
+D L GG+ C S+TE+ G GKTQFC+ +++ A LP++ GGL + +Y+ TE F
Sbjct: 90 LDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSA 149
Query: 87 RRLHQLSHTFRPSNDHNPCDYIFVQS-VHSVDQLL--DIMPKIESFIKNSSNSRLPIRLI 143
RL +++ + P + + S VH +L +++ +IES + + I+L+
Sbjct: 150 ERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISK--GIKLV 207
Query: 144 VIDSIAALFRSDFDNTMD-DLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV-------- 194
++DS+A++ R +FD + +LK+R+ + + LK +A F + V++TNQ+
Sbjct: 208 ILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGAL 267
Query: 195 ---VDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFL 240
DL+ P + ++ L G G + ALG W++ VN+RL L
Sbjct: 268 ASQADLVSPADDLS-LSEGTSG-----SSCVIAALGNTWSHSVNTRLIL 310
>sp|Q9UUL2|RAD57_SCHPO DNA repair protein rhp57 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp57 PE=1 SV=1
Length = 354
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 125/254 (49%), Gaps = 27/254 (10%)
Query: 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSAS 74
+T++ T G +D L GGIP +TE+ ESGSGK+QFC+QL L QLP S GG++ +
Sbjct: 70 VTSKYLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKA 129
Query: 75 SLYLHTEFPFPMRRLHQLSHTF---RPSND------HNPCDYIFVQSVHSVDQLLDIMPK 125
++++ TE +RL +L+ P D NP D ++ ++ I+
Sbjct: 130 AVFISTESGLETKRLFELARYLPERYPKADKKDIIIKNPGDRVYTILCPDLESQEHIIQY 189
Query: 126 IESFIKNSSNSRLPIRLIVIDSIAALFRSDFD--------NTMDDLKKRSFLFFKISGML 177
+ N R I L+++DS+A+ +R++ +D++ KR K++ L
Sbjct: 190 QLPILFN----RDKIGLVILDSVASNYRAELRYNRSKSHFRDLDNIAKRGNQLGKLAMTL 245
Query: 178 KAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSG------RPICPALGIAWA 231
+ +A AV++ NQV D + + GL + + SG P P+LG+ W
Sbjct: 246 RTLAHQHEAAVVIANQVSDRIPRDYDAIGLFSLDYQSQWFSGWDDTDPNPKIPSLGLVWT 305
Query: 232 NCVNSRLFLSRNED 245
N +++RL L + D
Sbjct: 306 NNISTRLALIKKTD 319
>sp|Q975Y1|RADA_SULTO DNA repair and recombination protein RadA OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=radA
PE=3 SV=1
Length = 324
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 130/288 (45%), Gaps = 49/288 (17%)
Query: 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSAS 74
+ T+K T G +D LGGGI ++TEL E GSGKTQ C QL+++ QLP GGL
Sbjct: 84 INTKKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGK 143
Query: 75 SLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSS 134
++Y+ TE F R+ +S D + ++++++S D + I+ ++ I
Sbjct: 144 AVYIDTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRAINS-DHQMAIVDDLQELI---- 198
Query: 135 NSRLP-IRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQ 193
S+ P I+L+++DS+ + FR++F ++L R K L +A + LAV++TNQ
Sbjct: 199 -SKDPAIKLVIVDSVTSHFRAEFPGR-ENLAVRQQKLNKHLHQLVRLAEMYDLAVIITNQ 256
Query: 194 VVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQM 253
V + P+ Y G P G + R+ L ++
Sbjct: 257 V--MARPD------------MFY--GDPTVAVGGHTLYHVPGIRVQLKKS---------- 290
Query: 254 VNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301
R +R +V APHL + F IT EGV E
Sbjct: 291 ---------------RGNKRIARIVDAPHLPEGEVVFAITEEGVRDAE 323
>sp|Q4JAT5|RADA_SULAC DNA repair and recombination protein RadA OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=radA PE=3 SV=1
Length = 321
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 127/287 (44%), Gaps = 47/287 (16%)
Query: 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSAS 74
+ T+K T G +D LGGGI ++TE E GSGKTQ C Q+++S QLP GGL+
Sbjct: 81 MNTKKITTGSQALDGLLGGGIETRTMTEFFGEFGSGKTQLCHQISISVQLPQEKGGLNGK 140
Query: 75 SLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSS 134
++Y+ TE F R+ ++ +D + ++++++S D + I+ ++ I
Sbjct: 141 AVYIDTEGTFRWERIEAMAKGAGLESDIAMNNIYYMRAINS-DHQMAIVDDLQELITKDP 199
Query: 135 NSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194
I+LI++DSI + FR+++ ++L R K L +A + +AV++TNQV
Sbjct: 200 ----AIKLIIVDSITSHFRAEYPGR-ENLAVRQQKLNKHLHQLVRLAEMYDIAVIITNQV 254
Query: 195 VDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMV 254
+ P+ Y G P G + R+ L +
Sbjct: 255 --MARPD------------MFY--GDPTTAVGGHTLYHVPGIRVQLKK------------ 286
Query: 255 NGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301
R +R +V APHL + F IT EGV E
Sbjct: 287 -------------SRGNKRIARIVDAPHLPEGEVVFAITEEGVRDAE 320
>sp|Q74MX9|RADA_NANEQ DNA repair and recombination protein RadA OS=Nanoarchaeum equitans
(strain Kin4-M) GN=radA PE=3 SV=1
Length = 325
Score = 100 bits (250), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 53/296 (17%)
Query: 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLP 65
T + +L+ T + T +D LGGGI ++TE E GSGKTQ QL + QLP
Sbjct: 75 TAEEVLEERQKTARITTMSKNLDSLLGGGIETAALTEFYGEYGSGKTQVGHQLAVDVQLP 134
Query: 66 SSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNP---CDYIFVQSVHSVDQLLDI 122
GGL ++Y+ TE F R+ Q++ D +P ++ V + D +
Sbjct: 135 PEQGGLEGKAVYIDTEGTFRPERIKQMAEAL----DLDPKKALKNVYHMKVFNTDHQMLA 190
Query: 123 MPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAV 182
K E I+ PI+LIV+DS+ ALFR+++ +++ L + +L+ +A
Sbjct: 191 ARKAEELIRKGE----PIKLIVVDSLTALFRAEYTGRGQLAERQHKLGRHVHDLLR-IAE 245
Query: 183 GFGLAVLVTNQVVDLMEPNEGVNGL-RVGNLGCLYSSGRPICPALGIAWANCVNSRLFLS 241
+ +A+ VTNQV + +P+ + GL V +G G A+ R+FL
Sbjct: 246 LYNVAIYVTNQV--MAKPDSFIPGLDSVQAVG-------------GHVLAHASTYRVFLR 290
Query: 242 RNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGV 297
+ + + R +V +PHL + F IT EG+
Sbjct: 291 KGKKGI-------------------------RIARLVDSPHLPERETTFVITEEGI 321
>sp|O74036|RADA_PYRFU DNA repair and recombination protein RadA OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=radA
PE=1 SV=1
Length = 349
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 43/297 (14%)
Query: 1 MGAPMTPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTL 60
+G M L T + + G +D+ LGGGI +ITE+ E GSGKTQ L +
Sbjct: 94 LGTFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV 153
Query: 61 SAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLL 120
QLP GGL+ S +++ TE F R+ +++ R + +I+V + + +
Sbjct: 154 MVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN-RGLDPDEVLKHIYVARAFNSNHQM 212
Query: 121 DIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAM 180
++ + E IK N+ P++L+++DS+ + FRS++ L +R K L +
Sbjct: 213 LLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG-RGALAERQQKLAKHLADLHRL 271
Query: 181 AVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFL 240
A + +AV VTNQV P+ + G P P G A+ R++L
Sbjct: 272 ANLYDIAVFVTNQV--QARPD------------AFF--GDPTRPIGGHILAHSATLRVYL 315
Query: 241 SRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGV 297
+ G GG +R ++ APHL + F IT +G+
Sbjct: 316 RK--------------GKGG-----------KRIARLIDAPHLPEGEAVFSITEKGI 347
>sp|B8D610|RADA_DESK1 DNA repair and recombination protein RadA OS=Desulfurococcus
kamchatkensis (strain 1221n / DSM 18924) GN=radA PE=3
SV=1
Length = 328
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 128/292 (43%), Gaps = 48/292 (16%)
Query: 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLP 65
T + + L K T G +D LGGG+ +ITE E GSGKTQ C QL+++ QL
Sbjct: 79 TAREVKQERLNIGKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLSVNVQLT 138
Query: 66 SSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPK 125
GGL+ ++Y+ TE F R+ ++ D D I+ ++ D + I+ +
Sbjct: 139 PEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPD-KVMDNIYYMRAYNSDHQIAIVDE 197
Query: 126 IESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFG 185
+ +F+ + +RL+++DS+ + FR+++ +++ L + +++ +A +
Sbjct: 198 LFTFVPKND-----VRLVILDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMR-LAEAYN 251
Query: 186 LAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245
+AV+VTNQV + P+ Y G P G A+ R+ L +
Sbjct: 252 VAVVVTNQV--MARPD------------VFY--GDPTTAVGGHVLAHTPGVRIQLRK--- 292
Query: 246 FVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGV 297
+ +R VV APHL + F IT EG+
Sbjct: 293 ----------------------SKGNKRIARVVDAPHLPEGEVVFVITEEGI 322
>sp|Q9Y8J4|RADA_DESAM DNA repair and recombination protein RadA OS=Desulfurococcus
amylolyticus GN=radA PE=3 SV=1
Length = 328
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 48/279 (17%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
K T G +D LGGG+ +ITE E GSGKTQ C QL+++ QL GGL+ ++Y+
Sbjct: 92 KITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYI 151
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
TE F R+ ++ D D I+ ++ D + I+ ++ +F+ +
Sbjct: 152 DTEGTFRWERIEAMARALGLDPD-KVMDNIYYMRAYNSDHQIAIVDELFTFVPKND---- 206
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
+RL+++DS+ + FR+++ +++ L + +++ +A + +AV+VTNQV +
Sbjct: 207 -VRLVILDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMR-LAEAYNVAVVVTNQV--MA 262
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGV 258
P+ Y G P G A+ R+ L +
Sbjct: 263 RPD------------VFY--GDPTTAVGGHVLAHTPGVRIQLRK---------------- 292
Query: 259 GGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGV 297
+ +R VV APHL + F IT EG+
Sbjct: 293 ---------SKGNKRIARVVDAPHLPEGEVVFVITEEGI 322
>sp|Q9XED7|R51A2_MAIZE DNA repair protein RAD51 homolog B OS=Zea mays GN=RAD51B PE=2 SV=1
Length = 340
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 128/283 (45%), Gaps = 45/283 (15%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ T G +D+ L GGI SITE+ E SGKTQ C L ++ QLP GG +LY+
Sbjct: 102 QLTTGSRELDQILDGGIETGSITEMYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYI 161
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
E F +R+ Q++ F N + + + ++ D ++ + S + +
Sbjct: 162 DAEGTFRPQRILQIADRF-GLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETR---- 216
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
L+V+DS AL+R+DF +L R K L+ +A FG+AV++TNQVV +
Sbjct: 217 -FALMVVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 274
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGV 258
+ G +G I P G A+ +RLFL +
Sbjct: 275 D-------------GAAMFAGPQIKPIGGNIMAHASTTRLFLRK---------------- 305
Query: 259 GGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301
G G E+ +C+ V+ +P LA+ F+I+ EGV V+
Sbjct: 306 -GRG-EERICK-------VISSPCLAEAEARFQISSEGVTDVK 339
>sp|Q55075|RADA_SULSO DNA repair and recombination protein RadA OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=radA PE=1 SV=2
Length = 324
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 47/287 (16%)
Query: 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSAS 74
+ +K + G +D L GGI ++TE E GSGKTQ C QL+++ QLP GGLS
Sbjct: 84 MNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGK 143
Query: 75 SLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSS 134
++Y+ TE F R+ ++ D+ + +++++++ D + I+ ++ +
Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT-DHQIAIVDDLQELVSKDP 202
Query: 135 NSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194
+ I+LIV+DS+ + FR+++ ++L R K L +A + +AV++TNQV
Sbjct: 203 S----IKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257
Query: 195 VDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMV 254
+ P+ Y G P G + R+ L +
Sbjct: 258 --MARPD------------MFY--GDPTVAVGGHTLYHVPGIRIQLKK------------ 289
Query: 255 NGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301
R RR VV APHL + F +T EG+ E
Sbjct: 290 -------------SRGNRRIARVVDAPHLPEGEVVFALTEEGIRDAE 323
>sp|C3N7M8|RADA_SULIY DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=radA PE=3 SV=1
Length = 324
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 47/287 (16%)
Query: 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSAS 74
+ +K + G +D L GGI ++TE E GSGKTQ C QL+++ QLP GGLS
Sbjct: 84 MNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGK 143
Query: 75 SLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSS 134
++Y+ TE F R+ ++ D+ + +++++++ D + I+ ++ +
Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT-DHQIAIVDDLQELVSKDP 202
Query: 135 NSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194
+ I+LIV+DS+ + FR+++ ++L R K L +A + +AV++TNQV
Sbjct: 203 S----IKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257
Query: 195 VDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMV 254
+ P+ Y G P G + R+ L +
Sbjct: 258 --MARPD------------MFY--GDPTVAVGGHTLYHVPGIRIQLKK------------ 289
Query: 255 NGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301
R RR VV APHL + F +T EG+ E
Sbjct: 290 -------------SRGNRRIARVVDAPHLPEGEVVFALTEEGIRDAE 323
>sp|C3NFU5|RADA_SULIN DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=radA PE=3 SV=1
Length = 324
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 47/287 (16%)
Query: 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSAS 74
+ +K + G +D L GGI ++TE E GSGKTQ C QL+++ QLP GGLS
Sbjct: 84 MNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGK 143
Query: 75 SLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSS 134
++Y+ TE F R+ ++ D+ + +++++++ D + I+ ++ +
Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT-DHQIAIVDDLQELVSKDP 202
Query: 135 NSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194
+ I+LIV+DS+ + FR+++ ++L R K L +A + +AV++TNQV
Sbjct: 203 S----IKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257
Query: 195 VDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMV 254
+ P+ Y G P G + R+ L +
Sbjct: 258 --MARPD------------MFY--GDPTVAVGGHTLYHVPGIRIQLKK------------ 289
Query: 255 NGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301
R RR VV APHL + F +T EG+ E
Sbjct: 290 -------------SRGNRRIARVVDAPHLPEGEVVFALTEEGIRDAE 323
>sp|C3MY77|RADA_SULIM DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=radA PE=3 SV=1
Length = 324
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 47/287 (16%)
Query: 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSAS 74
+ +K + G +D L GGI ++TE E GSGKTQ C QL+++ QLP GGLS
Sbjct: 84 MNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGK 143
Query: 75 SLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSS 134
++Y+ TE F R+ ++ D+ + +++++++ D + I+ ++ +
Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT-DHQIAIVDDLQELVSKDP 202
Query: 135 NSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194
+ I+LIV+DS+ + FR+++ ++L R K L +A + +AV++TNQV
Sbjct: 203 S----IKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257
Query: 195 VDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMV 254
+ P+ Y G P G + R+ L +
Sbjct: 258 --MARPD------------MFY--GDPTVAVGGHTLYHVPGIRIQLKK------------ 289
Query: 255 NGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301
R RR VV APHL + F +T EG+ E
Sbjct: 290 -------------SRGNRRIARVVDAPHLPEGEVVFALTEEGIRDAE 323
>sp|C3MRI1|RADA_SULIL DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=radA PE=3 SV=1
Length = 324
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 47/287 (16%)
Query: 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSAS 74
+ +K + G +D L GGI ++TE E GSGKTQ C QL+++ QLP GGLS
Sbjct: 84 MNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGK 143
Query: 75 SLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSS 134
++Y+ TE F R+ ++ D+ + +++++++ D + I+ ++ +
Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT-DHQIAIVDDLQELVSKDP 202
Query: 135 NSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194
+ I+LIV+DS+ + FR+++ ++L R K L +A + +AV++TNQV
Sbjct: 203 S----IKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257
Query: 195 VDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMV 254
+ P+ Y G P G + R+ L +
Sbjct: 258 --MARPD------------MFY--GDPTVAVGGHTLYHVPGIRIQLKK------------ 289
Query: 255 NGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301
R RR VV APHL + F +T EG+ E
Sbjct: 290 -------------SRGNRRIARVVDAPHLPEGEVVFALTEEGIRDAE 323
>sp|C4KIT6|RADA_SULIK DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=radA PE=3 SV=1
Length = 324
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 47/287 (16%)
Query: 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSAS 74
+ +K + G +D L GGI ++TE E GSGKTQ C QL+++ QLP GGLS
Sbjct: 84 MNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGK 143
Query: 75 SLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSS 134
++Y+ TE F R+ ++ D+ + +++++++ D + I+ ++ +
Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT-DHQIAIVDDLQELVSKDP 202
Query: 135 NSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194
+ I+LIV+DS+ + FR+++ ++L R K L +A + +AV++TNQV
Sbjct: 203 S----IKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257
Query: 195 VDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMV 254
+ P+ Y G P G + R+ L +
Sbjct: 258 --MARPD------------MFY--GDPTVAVGGHTLYHVPGIRIQLKK------------ 289
Query: 255 NGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301
R RR VV APHL + F +T EG+ E
Sbjct: 290 -------------SRGNRRIARVVDAPHLPEGEVVFALTEEGIRDAE 323
>sp|C3MZK6|RADA_SULIA DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.16.27) GN=radA PE=3 SV=1
Length = 324
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 47/287 (16%)
Query: 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSAS 74
+ +K + G +D L GGI ++TE E GSGKTQ C QL+++ QLP GGLS
Sbjct: 84 MNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGK 143
Query: 75 SLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSS 134
++Y+ TE F R+ ++ D+ + +++++++ D + I+ ++ +
Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT-DHQIAIVDDLQELVSKDP 202
Query: 135 NSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194
+ I+LIV+DS+ + FR+++ ++L R K L +A + +AV++TNQV
Sbjct: 203 S----IKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257
Query: 195 VDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMV 254
+ P+ Y G P G + R+ L +
Sbjct: 258 --MARPD------------MFY--GDPTVAVGGHTLYHVPGIRIQLKK------------ 289
Query: 255 NGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301
R RR VV APHL + F +T EG+ E
Sbjct: 290 -------------SRGNRRIARVVDAPHLPEGEVVFALTEEGIRDAE 323
>sp|Q9V233|RADA_PYRAB DNA repair and recombination protein RadA OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=radA PE=3 SV=2
Length = 353
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 130/297 (43%), Gaps = 43/297 (14%)
Query: 1 MGAPMTPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTL 60
+G M L + + + G +D+ LGGGI +ITE+ E GSGKTQ L +
Sbjct: 98 LGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV 157
Query: 61 SAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLL 120
QLP GGL+ S +++ TE F R+ +++ R + +I+V + + +
Sbjct: 158 MVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKN-RGLDPDEVLKHIYVARAFNSNHQM 216
Query: 121 DIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAM 180
++ + E IK N+ P++L+++DS+ + FRS++ L +R K L +
Sbjct: 217 LLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIG-RGALAERQQKLAKHLADLHRL 275
Query: 181 AVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFL 240
A + +AV VTNQV P+ + G P P G A+ R++L
Sbjct: 276 ANLYEIAVFVTNQV--QARPD------------AFF--GDPTRPIGGHILAHSATLRVYL 319
Query: 241 SRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGV 297
+ G GG +R ++ APHL + F IT +G+
Sbjct: 320 RK--------------GKGG-----------KRVARLIDAPHLPEGEAVFRITEKGI 351
>sp|O29269|RADA_ARCFU DNA repair and recombination protein RadA OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=radA PE=3 SV=1
Length = 337
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 135/303 (44%), Gaps = 47/303 (15%)
Query: 1 MGAPMTPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTL 60
+G + +L+ + +K T G +D LGGG+ +ITE E GSGKTQ C QL +
Sbjct: 71 IGGFESGDKVLERRRSVKKITTGSKDLDELLGGGVETQAITEFFGEFGSGKTQICHQLAV 130
Query: 61 SAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLL 120
+ QLP GGL S + + TE F R+ Q++ + + + I+V ++ + +
Sbjct: 131 NVQLPEDEGGLEGSVIIIDTENTFRPERIIQMAEA-KGLDGNEVLKNIYVAQAYNSNHQM 189
Query: 121 DIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDF--DNTMDDLKKRSFLFFKISGMLK 178
++ + + P+RLI++DS+ + FR+++ T+ D +++ L + ++K
Sbjct: 190 LLVDNAKELAEKLKKEGRPVRLIIVDSLMSHFRAEYVGRGTLADRQQK--LNRHLHDLMK 247
Query: 179 AMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRL 238
+ + A++VTNQV + P+ L+ G P P G A+ R+
Sbjct: 248 FGEL-YNAAIVVTNQV--MARPD------------VLF--GDPTKPVGGHIVAHTATFRI 290
Query: 239 FLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVF 298
+L + +D + R ++ +PHL + F +T G+
Sbjct: 291 YLKKGKDDL-------------------------RIARLIDSPHLPEGEAIFRVTERGIE 325
Query: 299 GVE 301
E
Sbjct: 326 DAE 328
>sp|A4YCN4|RADA_METS5 DNA repair and recombination protein RadA OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=radA PE=3 SV=1
Length = 324
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Query: 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASS 75
+ +K T G +D LGGGI ++TEL E GSGKTQ C Q++++ QLP GGLS +
Sbjct: 85 SVKKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQICHQVSVNVQLPPERGGLSGKA 144
Query: 76 LYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSN 135
LY+ TE F R+ ++ + + ++++++ D + I+ +++ I ++
Sbjct: 145 LYIDTEGTFRTERIKAMASALGLEPKEVLQNIMSIRAINT-DHQIAIVEELQDIIAKDNS 203
Query: 136 SRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVV 195
I+L+V+DSI + FR+++ ++L R + L +A + LAV+VTNQV+
Sbjct: 204 ----IKLVVVDSITSHFRAEYSG-RENLAVRQQKLNRHLHQLVRLAEIYDLAVIVTNQVM 258
>sp|Q8R2J9|RA51C_CRIGR DNA repair protein RAD51 homolog 3 OS=Cricetulus griseus GN=RAD51C
PE=2 SV=1
Length = 366
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 113/259 (43%), Gaps = 45/259 (17%)
Query: 2 GAPMTPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61
G T LL+ T C +D LGGGIP TE+ G GKTQ C+QL +
Sbjct: 73 GKKYTALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVD 132
Query: 62 AQLPSSHGGLSASSLYLHTEFPFPMRR-----------LHQLSHTFRPSNDH-------- 102
Q+P GG++ ++++ TE F + R LH ++ T +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEHQKALEGFTL 192
Query: 103 -NPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMD 161
N +I+ H +LL + + F+ N S ++L++ID IA FR D +D
Sbjct: 193 ENILSHIYYFRCHDYTELLAQVYLLPDFLSNHSK----VQLVIIDGIALPFRHD----LD 244
Query: 162 DLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRP 221
DL R+ L ++ + ++A LAV++TNQ+ ++ N+ +
Sbjct: 245 DLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDKNQAL----------------- 287
Query: 222 ICPALGIAWANCVNSRLFL 240
+ PALG +W + RL
Sbjct: 288 LVPALGESWGHAATIRLIF 306
>sp|O27436|RADA_METTH DNA repair and recombination protein RadA OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=radA PE=3 SV=1
Length = 311
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 123/279 (44%), Gaps = 47/279 (16%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ T G +D +GGGI +ITE+ E GSGK+Q +L ++ QLP GGL A ++++
Sbjct: 78 RITTGSKALDELIGGGIETQAITEVFGEFGSGKSQLSHELAVTVQLPEERGGLDAEAVFI 137
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
TE F R+ Q+++ F + ++ +S Q+L + K+ I+ N
Sbjct: 138 DTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQIL-MAEKVNELIQEGKN--- 193
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
IRL+++DS+ A FR+++ + L R + L+ +A + AV VTNQV
Sbjct: 194 -IRLVIVDSLTAHFRAEYVG-REALATRQQKLNQHLHTLQNIANTYNAAVFVTNQV--QA 249
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGV 258
P+ + G P G + R++L + G+
Sbjct: 250 RPD------------AFF--GSPTKAIGGHVLGHAATYRIWLKK--------------GL 281
Query: 259 GGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGV 297
G +R +V +PHL + C F+IT G+
Sbjct: 282 AG-----------KRIARLVDSPHLPEGECVFKITTAGI 309
>sp|A2SR54|RADA_METLZ DNA repair and recombination protein RadA OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=radA
PE=3 SV=1
Length = 329
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 105/237 (44%), Gaps = 40/237 (16%)
Query: 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP 83
P ID GGG+ +ITEL E GSGK+Q QL ++ QLP GGL S LY+ TE
Sbjct: 86 VPEIDELFGGGLETQAITELYGEFGSGKSQIAHQLAVNCQLPQELGGLGGSCLYIDTENT 145
Query: 84 FPMRRLHQLSHTFR----------PSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNS 133
F R+ Q++ P+ D + I V HS D + ++
Sbjct: 146 FRPERIEQMAEGLELADLPEGYVVPTPDEFLAN-IHVARAHSSDHQMLLIDAARELSNEL 204
Query: 134 SNSRLPIRLIVIDSIAALFRSDF------DNTMDDLKKRSFLFFKISGMLKAMAVGFGLA 187
+ S LP++L++IDS+ +LFRS++ L + FK+ L A+A
Sbjct: 205 TASGLPVKLVIIDSLTSLFRSEYAGRGTLAGRQQKLNRHMHDLFKLVDDLNAVA------ 258
Query: 188 VLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNE 244
LVTNQV + N G L+ G P P G + R++L +++
Sbjct: 259 -LVTNQV--------------MANPGLLF--GDPTKPIGGNIVGHTATYRVYLRKSK 298
>sp|P94102|RAD51_ARATH DNA repair protein RAD51 homolog 1 OS=Arabidopsis thaliana GN=RAD51
PE=1 SV=1
Length = 342
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 123/279 (44%), Gaps = 45/279 (16%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ T G +D+ L GGI SITEL E SGKTQ C L ++ QLP GG ++Y+
Sbjct: 104 QITSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYI 163
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
E F +RL Q++ F N + + + ++ D ++ + S + + +
Sbjct: 164 DAEGTFRPQRLLQIADRF-GLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFA-- 220
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
L+++DS AL+R+DF +L R K L+ +A FG+AV++TNQVV +
Sbjct: 221 ---LLIVDSATALYRTDFSG-RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGV 258
+ G +G P G A+ +RL L +
Sbjct: 277 D-------------GSALFAGPQFKPIGGNIMAHATTTRLALRKGR-------------- 309
Query: 259 GGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGV 297
+E+ +C+ V+ +P L + F+I+ EGV
Sbjct: 310 ----AEERICK-------VISSPCLPEAEARFQISTEGV 337
>sp|Q8GXF0|RA51C_ARATH DNA repair protein RAD51 homolog 3 OS=Arabidopsis thaliana
GN=RAD51C PE=1 SV=2
Length = 363
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 118/257 (45%), Gaps = 46/257 (17%)
Query: 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSH 68
++L + + T C +D LGGGI C +TE+ G GKTQ +QL+++ Q+P
Sbjct: 94 DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 153
Query: 69 GGLSASSLYLHTEFPFPMRRLHQLS--------------HTFRPSND-----HNPCDYIF 109
GGL ++Y+ TE F + R Q++ H +N + + IF
Sbjct: 154 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 213
Query: 110 VQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFL 169
V S + + ++ +E FI + + ++++++DSI FR D+ DDL +R+ +
Sbjct: 214 YFRVCSYTEQIALVNHLEKFISENKD----VKVVIVDSITFHFRQDY----DDLAQRTRV 265
Query: 170 FFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGR-PICPALGI 228
+++ +A F LAV++ NQV +S G + ALG
Sbjct: 266 LSEMALKFMKLAKKFSLAVVLLNQVT------------------TKFSEGSFQLALALGD 307
Query: 229 AWANCVNSRLFLSRNED 245
+W++ +R+ L N D
Sbjct: 308 SWSHSCTNRVILYWNGD 324
>sp|Q40134|RAD51_SOLLC DNA repair protein RAD51 homolog OS=Solanum lycopersicum GN=RAD51
PE=2 SV=1
Length = 342
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 126/283 (44%), Gaps = 45/283 (15%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ T G +D+ L GGI SITE+ E GKTQ C L ++ QLP GG ++Y+
Sbjct: 104 QITSGSKELDKILEGGIETGSITEIYGEFRCGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 163
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
E F +RL Q++ + N + + + ++ D ++ + S + + +
Sbjct: 164 DAEGTFRPQRLLQIADRY-GLNGPDVLENVAYARAYNTDHQSRLLLEAASMMVETRFA-- 220
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
L+++DS AL+R+DF +L R K L+ +A FG+AV++TNQVV +
Sbjct: 221 ---LMIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 276
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGV 258
+ G +G I P G A+ +RL L +
Sbjct: 277 D-------------GSAVFAGPQIKPIGGNIMAHASTTRLALRKGR-------------- 309
Query: 259 GGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301
+E+ +C+ VV +P LA+ F+I+ EGV V+
Sbjct: 310 ----AEERICK-------VVSSPCLAEAEARFQISVEGVTDVK 341
>sp|A8AB83|RADA_IGNH4 DNA repair and recombination protein RadA OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=radA PE=3
SV=1
Length = 327
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 29/204 (14%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLS-----A 73
K T G +D LGGGI +ITE E GSGK+Q C Q +++ QLP GGLS A
Sbjct: 87 KITTGSKNLDDLLGGGIETKTITEFFGEFGSGKSQLCHQASVNVQLPLEQGGLSEGDKVA 146
Query: 74 SSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHS------VDQLLDIMPKIE 127
++Y+ TE F R+ Q++ D + ++++V+S V++L +++PK
Sbjct: 147 KAVYVDTEGTFRWERIEQMAKCLGLDPDQVMDNIYYIRAVNSDHQMAIVEELFNLVPK-- 204
Query: 128 SFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLA 187
+N ++LIV+DS+ + FR+++ ++L R K L +A + A
Sbjct: 205 ---EN-------VKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLGKLAEVYNTA 253
Query: 188 VLVTNQVV---DLM--EPNEGVNG 206
V++TNQV+ D+ +P + V G
Sbjct: 254 VIITNQVMARPDVFYGDPTQAVGG 277
>sp|Q2NE95|RADA_METST DNA repair and recombination protein RadA OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=radA PE=3 SV=1
Length = 311
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 6/176 (3%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ T G +D +GGGI SITE+ E GSGK+Q +L+++ QLP GGL +++
Sbjct: 78 RITTGSKGLDELIGGGIETQSITEVYGEFGSGKSQISHELSVTTQLPVEEGGLDGEVVFI 137
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
TE F R+ Q++ F + + ++ +S Q+L + KI I++ N
Sbjct: 138 DTENTFRPERIEQIAEGFGLNIEEVLKKIHVARAFNSSHQIL-MADKINELIQSGVN--- 193
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194
I+LI+IDS+ A FR+++ + L R + L+ +A + +AVL+TNQV
Sbjct: 194 -IKLIIIDSLMAHFRAEYVG-RESLATRQQKLNQHLHTLQTIANTYNVAVLITNQV 247
>sp|Q39009|DMC1_ARATH Meiotic recombination protein DMC1 homolog OS=Arabidopsis thaliana
GN=LIM15 PE=1 SV=2
Length = 344
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 130/296 (43%), Gaps = 52/296 (17%)
Query: 5 MTPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQL 64
MT + L + K T GC +D LGGGI ++ITE E SGKTQ L ++ QL
Sbjct: 93 MTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQL 152
Query: 65 PSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV---HSVDQLLD 121
P++ G + Y+ TE F R+ ++ F + I+ ++ H + LL
Sbjct: 153 PTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLG 212
Query: 122 IMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMA 181
+ K+ S P R++++DSI ALFR DF + ++ L +S ++K +A
Sbjct: 213 LAAKM---------SEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIK-IA 262
Query: 182 VGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLS 241
F +AV +TNQV+ +P G ++ S P PA G A+ RL
Sbjct: 263 EEFNVAVYMTNQVI--ADPG-----------GGMFIS-DPKKPAGGHVLAHAATIRLLFR 308
Query: 242 RNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGV 297
+ + + VC+ V AP+LA+ F+IT+ G+
Sbjct: 309 KGK------------------GDTRVCK-------VYDAPNLAEAEASFQITQGGI 339
>sp|Q27297|RAD51_DROME DNA repair protein Rad51 homolog OS=Drosophila melanogaster
GN=spn-A PE=2 SV=1
Length = 336
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 21/226 (9%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ + G +D+ LGGGI SITE+ E GKTQ C L ++ QLP S G +Y+
Sbjct: 98 QLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMYI 157
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
TE F RL ++ ++ N+ D + H+ DQ ++ + S +
Sbjct: 158 DTENTFRPERLAAIAQRYKL-NESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYA-- 214
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
L+++DS AL+RSD+ + +++ L + ML+ +A FG+AV++TNQV +
Sbjct: 215 ---LLIVDSAMALYRSDYIGRGELAARQNHLGLFLR-MLQRLADEFGVAVVITNQVTASL 270
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNE 244
+ G ++ + +PI G A+ +RL+L + +
Sbjct: 271 DGAPG-----------MFDAKKPIG---GHIMAHSSTTRLYLRKGK 302
>sp|Q8PZN5|RADA_METMA DNA repair and recombination protein RadA OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=radA PE=3 SV=2
Length = 325
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 120/249 (48%), Gaps = 46/249 (18%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
K T GC D +GGGI +ITEL E GSGKTQ QL ++ Q+ HGGL S + +
Sbjct: 81 KLTTGCTEFDEMMGGGIETQAITELYGEFGSGKTQVAHQLAVNVQMDREHGGLGGSVIII 140
Query: 79 HTEFPFPMRRLHQLSHTF--RPSNDHNPCDYIFVQSVHS------------VDQLLDIMP 124
TE F R+ Q+ + + + NP + F+Q++H VD +D+
Sbjct: 141 DTENTFRPERITQMVNGLSEKYGMELNPEE--FLQNIHVARAYNSNHQILLVDSAVDLAN 198
Query: 125 KIESFIKNSSNSRLPIRLIVIDSIAALFRSDF--DNTMDDLKKRSFLFFKISGMLKAMAV 182
+++ K P+RL+++DS+ A FR+++ T+ D +++ L + G+L+ +
Sbjct: 199 ELKEMGK-------PVRLLIVDSLMAHFRAEYVGRGTLADRQQK--LNKHMHGLLRFGDL 249
Query: 183 GFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFL-- 240
F V+VTNQV + +P+ + G P P G + RL+L
Sbjct: 250 -FNACVVVTNQV--MAKPD------------AFF--GDPTRPIGGHIVGHTATFRLYLRK 292
Query: 241 SRNEDFVVR 249
S+ E ++R
Sbjct: 293 SKGEKRIIR 301
>sp|Q67EU8|R51A1_MAIZE DNA repair protein RAD51 homolog A OS=Zea mays GN=RAD51A PE=2 SV=2
Length = 340
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 125/283 (44%), Gaps = 45/283 (15%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ T G +D+ L GGI SITE+ E SGKTQ C ++ QLP GG +LY+
Sbjct: 102 QVTTGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTPCVTCQLPLDQGGGEGKALYI 161
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
E F +RL Q++ F N + + + ++ D ++ + S + + +
Sbjct: 162 DAEGTFRPQRLLQIADRF-GLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFA-- 218
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
L+V+DS AL+R+DF +L R K L+ +A FG+AV++TNQVV +
Sbjct: 219 ---LMVVDSATALYRTDFSGR-GELSARQMHMAKFLRSLQKLADEFGVAVVITNQVVAQV 274
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGV 258
+ G +G P G A+ +RL L +
Sbjct: 275 D-------------GSAMFAGPQFKPIGGNIMAHASTTRLALRK---------------- 305
Query: 259 GGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301
G G E+ +C+ V+ +P LA+ F++ EG+ V+
Sbjct: 306 -GRG-EERICK-------VISSPCLAEAEARFQLASEGIADVK 339
>sp|Q8TK71|RADA_METAC DNA repair and recombination protein RadA OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=radA PE=3 SV=1
Length = 325
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 42/247 (17%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
K T GC D +GGGI SITEL E GSGKTQ QL ++ Q+ HGGL S + +
Sbjct: 81 KLTTGCVEFDEMMGGGIETQSITELYGEFGSGKTQVAHQLAVNVQMDKEHGGLDGSVIII 140
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHS------------VDQLLDIMPKI 126
TE F R+ Q+ F+Q++H VD D+ ++
Sbjct: 141 DTENTFRPERITQMVKGLSEKYGMELDPEEFLQNIHVARAYNSNHQILLVDSATDLANEL 200
Query: 127 ESFIKNSSNSRLPIRLIVIDSIAALFRSDF--DNTMDDLKKRSFLFFKISGMLKAMAVGF 184
+ K P+RL+++DS+ A FR+++ T+ D +++ L + G+L+ + F
Sbjct: 201 KEMGK-------PVRLLIVDSLMAHFRAEYVGRGTLADRQQK--LNKHMHGLLRFGDL-F 250
Query: 185 GLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFL--SR 242
V+VTNQV + +P+ + G P P G + RL+L S+
Sbjct: 251 NACVVVTNQV--MAKPD------------AFF--GDPTRPVGGHIVGHTATFRLYLRKSK 294
Query: 243 NEDFVVR 249
E ++R
Sbjct: 295 GEKRIIR 301
>sp|Q99133|RAD51_USTMA DNA repair protein RAD51 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RAD51 PE=3 SV=1
Length = 339
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 7/175 (4%)
Query: 21 TVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80
T G +D LGGG+ SITEL E +GK+Q C L ++ QLP GG LY+ T
Sbjct: 103 TTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYIDT 162
Query: 81 EFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPI 140
E F RL ++ F N D + ++ D L ++ + + + S S
Sbjct: 163 ENTFRPTRLLAVAERF-GLNGEEVLDNVAYARAYNADHQLQLLMQASAMMAESRFS---- 217
Query: 141 RLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVV 195
L+++DS+ +L+R+DF +L R K L +A FG+AV++TNQVV
Sbjct: 218 -LLIVDSLTSLYRTDFSGR-GELSARQMHLAKFLRGLMRLADEFGVAVVITNQVV 270
>sp|P37383|RAD51_CHICK DNA repair protein RAD51 homolog 1 OS=Gallus gallus GN=RAD51A PE=2
SV=1
Length = 339
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 20/224 (8%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ T G +D+ L GGI SITEL E +GKTQ C L ++ QLP GG ++Y+
Sbjct: 101 QITTGSKELDKLLQGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYI 160
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
TE F RL ++ + S + D + + D ++ + + + S +
Sbjct: 161 DTEGTFRPERLLAVAERYGLSGS-DVLDNVAYARGFNTDHQTQLLYQASAMMAESRYA-- 217
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
L+++DS AL+R+D+ +L R + ML +A FG+AV++TNQVV +
Sbjct: 218 ---LLIVDSATALYRTDYSG-RGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 273
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSR 242
+ G + P P G A+ +RL+L +
Sbjct: 274 D-------------GAAMFAADPKKPIGGNIIAHASTTRLYLRK 304
>sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1
SV=1
Length = 339
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 20/224 (8%)
Query: 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYL 78
+ T G +D+ L GGI SITE+ E +GKTQ C L ++ QLP GG ++Y+
Sbjct: 101 QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYI 160
Query: 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL 138
TE F RL ++ + S + D + + D ++ + + + S +
Sbjct: 161 DTEGTFRPERLLAVAERYGLSGS-DVLDNVAYARAFNTDHQTQLLYQASAMMVESRYA-- 217
Query: 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198
L+++DS AL+R+D+ +L R + ML +A FG+AV++TNQVV +
Sbjct: 218 ---LLIVDSATALYRTDYSGR-GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 273
Query: 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSR 242
+ G + P P G A+ +RL+L +
Sbjct: 274 D-------------GAAMFAADPKKPIGGNIIAHASTTRLYLRK 304
>sp|A5UMW0|RADA_METS3 DNA repair and recombination protein RadA OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=radA PE=3
SV=1
Length = 311
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 127/292 (43%), Gaps = 47/292 (16%)
Query: 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLP 65
T ++L+ +VG + +GGGI SITE+ E GSGK+Q +L ++ QLP
Sbjct: 65 TAYDVLERRRDVGHISVGSEGFNDLIGGGIETQSITEVFGEFGSGKSQISHELAVTVQLP 124
Query: 66 SSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPK 125
GGL +++ TE F R+ Q+++ F D ++ +S Q+L + K
Sbjct: 125 PEKGGLDGECVFIDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQIL-MAEK 183
Query: 126 IESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFG 185
I I+ +N I+L+++DS+ A FR+++ + L R + L+ +A +
Sbjct: 184 INELIQQGNN----IKLVIVDSLMAHFRAEYVGR-ESLAVRQQKLNQHLHALQQIANTYN 238
Query: 186 LAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245
+AV +TNQV +P+ G P G + R++L +
Sbjct: 239 VAVFITNQV--QAKPDSFF--------------GSPTKAIGGHVLGHASTYRIWLKK--- 279
Query: 246 FVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGV 297
G+ G +R +V +PHL + C F+I EG+
Sbjct: 280 -----------GLAG-----------KRIARLVDSPHLPEGECVFKIKTEGI 309
>sp|O43502|RA51C_HUMAN DNA repair protein RAD51 homolog 3 OS=Homo sapiens GN=RAD51C PE=1
SV=1
Length = 376
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 45/255 (17%)
Query: 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLP 65
T LL+ T C +D LGGG+P TE+ G GKTQ C+QL + Q+P
Sbjct: 86 TALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIP 145
Query: 66 SSHGGLSASSLYLHTEFPFPMRRLHQLS-----HTFRPSNDH---------------NPC 105
GG++ ++++ TE F + R+ L+ H + H N
Sbjct: 146 ECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNIL 205
Query: 106 DYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKK 165
+I+ +LL + + F+ S +RL+++D IA FR D +DDL
Sbjct: 206 SHIYYFRCRDYTELLAQVYLLPDFLSEHSK----VRLVIVDGIAFPFRHD----LDDLSL 257
Query: 166 RSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPA 225
R+ L ++ + ++A LAV++TNQ+ ++ N+ + + PA
Sbjct: 258 RTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQAL-----------------LVPA 300
Query: 226 LGIAWANCVNSRLFL 240
LG +W + RL
Sbjct: 301 LGESWGHAATIRLIF 315
>sp|Q924H5|RA51C_MOUSE DNA repair protein RAD51 homolog 3 OS=Mus musculus GN=Rad51c PE=2
SV=1
Length = 366
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 45/255 (17%)
Query: 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLP 65
T LL+ T C +D LGGGIP TE+ G GKTQ C+QL + Q+P
Sbjct: 77 TALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIP 136
Query: 66 SSHGGLSASSLYLHTEFPFPMRR-----------LHQLSHTFRPSNDH---------NPC 105
GG++ ++++ TE F + R LH ++ T N
Sbjct: 137 ECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTLENIL 196
Query: 106 DYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKK 165
+I+ H +LL + + F+ + ++L++ID IA FR D ++DL
Sbjct: 197 SHIYYFRCHDYTELLAQVYLLPDFLSDHPK----VQLVIIDGIAFPFRHD----LEDLSL 248
Query: 166 RSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPA 225
R+ L ++ + ++A LAV++TNQ+ ++ N+ + + PA
Sbjct: 249 RTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDKNQAL-----------------LVPA 291
Query: 226 LGIAWANCVNSRLFL 240
LG +W + RL
Sbjct: 292 LGESWGHAATIRLIF 306
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,603,224
Number of Sequences: 539616
Number of extensions: 4588371
Number of successful extensions: 11134
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 533
Number of HSP's that attempted gapping in prelim test: 10697
Number of HSP's gapped (non-prelim): 705
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)