Query 022155
Match_columns 302
No_of_seqs 220 out of 2381
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08423 Rad51: Rad51; InterP 100.0 1.2E-53 2.7E-58 372.3 22.5 250 7-301 7-256 (256)
2 PLN03187 meiotic recombination 100.0 1.5E-48 3.3E-53 350.4 26.9 250 6-301 94-343 (344)
3 KOG1564 DNA repair protein RHP 100.0 5.8E-49 1.3E-53 331.6 22.0 262 17-300 81-351 (351)
4 TIGR02238 recomb_DMC1 meiotic 100.0 1.7E-48 3.6E-53 348.0 26.1 250 6-300 64-313 (313)
5 KOG1434 Meiotic recombination 100.0 6.5E-50 1.4E-54 332.9 11.8 249 8-300 85-333 (335)
6 PLN03186 DNA repair protein RA 100.0 1.1E-46 2.4E-51 338.8 26.4 249 8-301 93-341 (342)
7 PTZ00035 Rad51 protein; Provis 100.0 1.1E-45 2.3E-50 333.5 26.6 251 6-301 86-336 (337)
8 TIGR02239 recomb_RAD51 DNA rep 100.0 9.7E-45 2.1E-49 324.8 25.9 250 8-301 66-315 (316)
9 PRK04301 radA DNA repair and r 100.0 9.4E-43 2E-47 314.1 26.8 247 6-299 70-316 (317)
10 TIGR02236 recomb_radA DNA repa 100.0 1.1E-42 2.4E-47 313.2 26.7 247 6-299 63-310 (310)
11 cd01123 Rad51_DMC1_radA Rad51_ 100.0 5.9E-42 1.3E-46 296.9 27.0 235 20-298 1-235 (235)
12 COG0468 RecA RecA/RadA recombi 100.0 2.1E-38 4.4E-43 275.9 24.6 234 12-301 34-268 (279)
13 cd01393 recA_like RecA is a b 100.0 3.5E-38 7.6E-43 271.7 25.3 226 20-290 1-226 (226)
14 PRK09361 radB DNA repair and r 100.0 2.4E-36 5.3E-41 260.1 26.2 221 18-300 3-224 (225)
15 cd01394 radB RadB. The archaea 100.0 9.8E-35 2.1E-39 248.9 24.8 217 20-298 1-218 (218)
16 TIGR02237 recomb_radB DNA repa 100.0 7.3E-34 1.6E-38 241.9 24.7 208 27-298 1-209 (209)
17 cd00983 recA RecA is a bacter 100.0 5.2E-34 1.1E-38 253.7 23.0 231 14-299 30-266 (325)
18 PRK09354 recA recombinase A; P 100.0 1.2E-33 2.5E-38 253.1 23.0 229 16-299 37-271 (349)
19 TIGR02012 tigrfam_recA protein 100.0 5.9E-33 1.3E-37 246.9 20.1 230 15-299 31-266 (321)
20 PRK09519 recA DNA recombinatio 100.0 2.6E-31 5.6E-36 258.1 23.4 227 14-295 35-265 (790)
21 PF00154 RecA: recA bacterial 100.0 2.3E-30 5E-35 229.6 21.9 230 14-298 28-263 (322)
22 TIGR03878 thermo_KaiC_2 KaiC d 100.0 5.5E-28 1.2E-32 211.8 21.8 228 19-301 3-255 (259)
23 cd01121 Sms Sms (bacterial rad 100.0 1.1E-27 2.4E-32 218.5 22.9 209 16-301 60-269 (372)
24 PRK11823 DNA repair protein Ra 100.0 2.1E-27 4.5E-32 222.4 22.6 209 16-301 58-267 (446)
25 KOG1433 DNA repair protein RAD 100.0 2.3E-29 5.1E-34 222.3 6.7 238 12-300 85-322 (326)
26 TIGR00416 sms DNA repair prote 100.0 5.6E-27 1.2E-31 219.6 20.9 207 17-300 73-280 (454)
27 TIGR03877 thermo_KaiC_1 KaiC d 100.0 7.6E-27 1.6E-31 202.3 19.2 213 18-300 1-232 (237)
28 PRK04328 hypothetical protein; 99.9 4.4E-26 9.6E-31 198.7 22.0 213 18-300 3-234 (249)
29 COG1066 Sms Predicted ATP-depe 99.9 1.9E-26 4E-31 205.7 19.9 216 8-301 62-279 (456)
30 PF06745 KaiC: KaiC; InterPro 99.9 5E-26 1.1E-30 196.0 17.5 213 20-302 1-225 (226)
31 TIGR02655 circ_KaiC circadian 99.9 5.9E-23 1.3E-27 195.0 22.1 222 14-302 239-464 (484)
32 TIGR03881 KaiC_arch_4 KaiC dom 99.9 1.2E-22 2.5E-27 175.4 22.1 209 19-299 1-227 (229)
33 PRK09302 circadian clock prote 99.9 1.2E-22 2.6E-27 194.6 22.4 220 15-301 250-473 (509)
34 PRK06067 flagellar accessory p 99.9 4E-22 8.7E-27 172.6 22.0 213 17-300 4-227 (234)
35 TIGR03880 KaiC_arch_3 KaiC dom 99.9 5.2E-22 1.1E-26 170.8 22.3 213 23-301 1-219 (224)
36 TIGR02655 circ_KaiC circadian 99.9 5.8E-22 1.2E-26 188.2 20.8 215 18-300 1-229 (484)
37 PRK09302 circadian clock prote 99.9 9.3E-22 2E-26 188.5 21.7 221 12-300 5-239 (509)
38 cd01122 GP4d_helicase GP4d_hel 99.9 8.4E-21 1.8E-25 167.8 19.8 221 17-283 10-250 (271)
39 PRK08533 flagellar accessory p 99.8 8.8E-19 1.9E-23 150.9 19.1 213 18-300 4-225 (230)
40 COG0467 RAD55 RecA-superfamily 99.8 4.8E-18 1E-22 149.4 20.0 215 17-301 2-234 (260)
41 cd00984 DnaB_C DnaB helicase C 99.8 2.5E-18 5.4E-23 149.5 16.1 215 26-290 2-238 (242)
42 TIGR00665 DnaB replicative DNA 99.8 2.3E-17 4.9E-22 155.4 20.3 223 16-291 174-421 (434)
43 TIGR03600 phage_DnaB phage rep 99.8 1.8E-17 3.8E-22 155.4 19.1 217 17-290 174-419 (421)
44 PF03796 DnaB_C: DnaB-like hel 99.8 1.4E-17 3E-22 146.4 16.6 221 19-293 1-248 (259)
45 KOG2859 DNA repair protein, me 99.8 1.4E-17 3E-22 136.8 14.0 201 35-245 35-259 (293)
46 PRK08760 replicative DNA helic 99.8 3.4E-17 7.3E-22 154.8 18.7 222 15-290 207-455 (476)
47 PRK05748 replicative DNA helic 99.8 6.8E-17 1.5E-21 152.5 20.3 223 16-292 182-432 (448)
48 PRK06321 replicative DNA helic 99.7 1.3E-16 2.9E-21 150.2 19.2 221 17-291 206-454 (472)
49 PHA02542 41 41 helicase; Provi 99.7 2.4E-16 5.3E-21 148.3 20.9 220 16-286 168-409 (473)
50 PRK05595 replicative DNA helic 99.7 2E-16 4.3E-21 149.0 19.8 224 16-292 180-428 (444)
51 PRK05636 replicative DNA helic 99.7 2.1E-16 4.6E-21 149.9 19.0 219 17-290 245-490 (505)
52 PRK09165 replicative DNA helic 99.7 1.1E-16 2.4E-21 152.2 16.6 196 16-245 196-430 (497)
53 PF13481 AAA_25: AAA domain; P 99.7 4.7E-18 1E-22 142.6 5.7 168 17-196 11-190 (193)
54 PRK07004 replicative DNA helic 99.7 3.6E-16 7.8E-21 147.3 18.8 222 17-291 193-440 (460)
55 PRK08006 replicative DNA helic 99.7 6.3E-16 1.4E-20 145.8 20.2 219 17-291 204-452 (471)
56 PRK06904 replicative DNA helic 99.7 7.9E-16 1.7E-20 145.2 20.1 221 16-291 200-451 (472)
57 PRK08506 replicative DNA helic 99.7 2.2E-16 4.8E-21 149.3 16.1 189 17-245 172-389 (472)
58 PRK05973 replicative DNA helic 99.7 3.2E-16 7E-21 134.3 15.1 145 27-200 54-198 (237)
59 PRK08840 replicative DNA helic 99.7 1.8E-15 4E-20 142.4 21.4 223 16-292 196-446 (464)
60 COG2874 FlaH Predicted ATPases 99.7 3.6E-15 7.7E-20 123.0 18.4 211 19-299 9-229 (235)
61 PRK06749 replicative DNA helic 99.7 1.2E-14 2.6E-19 135.7 21.0 221 16-291 165-416 (428)
62 PRK07773 replicative DNA helic 99.6 1.9E-15 4E-20 153.1 13.2 165 16-199 196-381 (886)
63 cd01124 KaiC KaiC is a circadi 99.6 1.1E-13 2.3E-18 115.4 18.0 178 40-286 1-186 (187)
64 cd01125 repA Hexameric Replica 99.6 1.5E-13 3.2E-18 119.4 18.4 172 38-245 1-193 (239)
65 COG0305 DnaB Replicative DNA h 99.5 8.2E-13 1.8E-17 121.6 19.8 229 17-295 176-426 (435)
66 cd01120 RecA-like_NTPases RecA 99.5 1.2E-12 2.6E-17 106.1 14.5 164 40-242 1-165 (165)
67 COG3598 RepA RecA-family ATPas 99.3 1E-11 2.2E-16 108.3 9.6 150 33-197 84-244 (402)
68 COG1127 Ttg2A ABC-type transpo 99.1 3E-10 6.6E-15 95.7 6.9 93 8-110 6-108 (263)
69 COG3842 PotA ABC-type spermidi 99.0 2.2E-10 4.9E-15 103.2 3.8 60 14-82 9-68 (352)
70 KOG2373 Predicted mitochondria 99.0 1.9E-09 4.1E-14 95.1 9.4 157 24-199 260-429 (514)
71 COG1116 TauB ABC-type nitrate/ 98.9 3.5E-10 7.5E-15 96.3 2.1 38 24-62 16-53 (248)
72 COG1120 FepC ABC-type cobalami 98.9 1.2E-08 2.5E-13 88.4 11.3 149 25-195 16-199 (258)
73 COG4608 AppF ABC-type oligopep 98.9 9.1E-09 2E-13 88.8 10.0 154 10-196 4-171 (268)
74 COG1136 SalX ABC-type antimicr 98.9 2.8E-09 6.1E-14 90.4 6.4 150 24-195 18-203 (226)
75 COG1126 GlnQ ABC-type polar am 98.9 1.1E-08 2.5E-13 85.1 9.8 145 24-194 15-195 (240)
76 COG0444 DppD ABC-type dipeptid 98.9 4.7E-09 1E-13 92.5 7.7 66 24-92 18-85 (316)
77 COG1125 OpuBA ABC-type proline 98.9 3E-09 6.6E-14 90.4 5.9 150 23-196 13-197 (309)
78 COG1124 DppF ABC-type dipeptid 98.9 6.4E-09 1.4E-13 88.0 7.3 50 25-82 21-70 (252)
79 COG3638 ABC-type phosphate/pho 98.8 1.8E-08 4E-13 84.9 8.7 165 10-196 3-209 (258)
80 PF13479 AAA_24: AAA domain 98.8 4.6E-08 1E-12 83.4 11.1 123 38-199 3-141 (213)
81 COG4619 ABC-type uncharacteriz 98.8 1.7E-07 3.7E-12 75.1 13.2 154 20-197 12-196 (223)
82 COG1121 ZnuC ABC-type Mn/Zn tr 98.8 4.4E-08 9.5E-13 84.4 10.5 37 25-62 18-54 (254)
83 COG4107 PhnK ABC-type phosphon 98.8 1.6E-07 3.4E-12 75.8 12.8 69 6-82 2-70 (258)
84 cd00544 CobU Adenosylcobinamid 98.8 1E-07 2.2E-12 78.1 11.5 91 40-157 1-91 (169)
85 COG1135 AbcC ABC-type metal io 98.8 1.6E-08 3.5E-13 88.4 7.0 152 23-196 18-203 (339)
86 COG0411 LivG ABC-type branched 98.8 4.2E-09 9E-14 89.2 3.0 165 10-197 4-212 (250)
87 PF07088 GvpD: GvpD gas vesicl 98.7 3.8E-07 8.1E-12 82.3 14.8 188 35-295 7-208 (484)
88 COG3839 MalK ABC-type sugar tr 98.7 9.8E-09 2.1E-13 92.2 4.5 146 26-194 18-193 (338)
89 COG0410 LivF ABC-type branched 98.7 4.7E-08 1E-12 82.2 8.1 142 33-195 24-197 (237)
90 COG2884 FtsE Predicted ATPase 98.7 2.6E-08 5.6E-13 81.3 5.6 50 12-62 3-52 (223)
91 COG4604 CeuD ABC-type enteroch 98.7 5.5E-07 1.2E-11 74.1 12.9 49 26-82 16-64 (252)
92 COG1131 CcmA ABC-type multidru 98.7 9.1E-08 2E-12 85.5 9.1 38 24-62 18-55 (293)
93 COG1122 CbiO ABC-type cobalt t 98.7 2.7E-08 5.8E-13 85.7 5.2 52 23-82 16-67 (235)
94 PF13401 AAA_22: AAA domain; P 98.7 1.4E-07 3.1E-12 73.6 8.9 122 37-194 3-125 (131)
95 COG3845 ABC-type uncharacteriz 98.7 6.4E-08 1.4E-12 89.5 7.7 156 10-195 4-200 (501)
96 cd03214 ABC_Iron-Siderophores_ 98.6 3.5E-07 7.6E-12 75.8 11.2 137 26-196 14-159 (180)
97 TIGR01618 phage_P_loop phage n 98.6 1.8E-06 3.8E-11 73.5 15.2 124 38-197 12-145 (220)
98 smart00382 AAA ATPases associa 98.6 3.9E-07 8.5E-12 71.0 10.5 42 38-85 2-43 (148)
99 cd03229 ABC_Class3 This class 98.6 2E-07 4.3E-12 77.2 9.1 140 26-196 15-162 (178)
100 PRK05800 cobU adenosylcobinami 98.6 6E-07 1.3E-11 73.7 11.7 92 39-156 2-93 (170)
101 cd03216 ABC_Carb_Monos_I This 98.6 9.9E-07 2.1E-11 71.9 12.2 127 26-196 15-143 (163)
102 COG1129 MglA ABC-type sugar tr 98.6 1.4E-07 3E-12 88.6 7.9 66 8-82 6-71 (500)
103 COG3840 ThiQ ABC-type thiamine 98.6 2.2E-07 4.8E-12 75.4 7.8 43 33-82 20-62 (231)
104 COG4175 ProV ABC-type proline/ 98.6 4.1E-07 9E-12 79.9 9.6 140 34-196 50-226 (386)
105 TIGR02314 ABC_MetN D-methionin 98.6 1.6E-07 3.4E-12 85.6 7.1 50 25-82 19-68 (343)
106 cd03246 ABCC_Protease_Secretio 98.5 2.2E-07 4.9E-12 76.5 7.4 136 26-196 17-157 (173)
107 COG1123 ATPase components of v 98.5 2.6E-07 5.6E-12 87.4 8.2 38 24-62 304-341 (539)
108 COG4586 ABC-type uncharacteriz 98.5 1E-06 2.2E-11 76.0 10.9 147 32-199 44-221 (325)
109 PF05621 TniB: Bacterial TniB 98.5 2.4E-06 5.3E-11 75.3 13.3 126 39-193 62-188 (302)
110 PRK13636 cbiO cobalt transport 98.5 6.7E-08 1.5E-12 86.0 3.6 50 24-81 19-68 (283)
111 PRK04296 thymidine kinase; Pro 98.5 9.7E-07 2.1E-11 73.9 10.3 115 38-197 2-118 (190)
112 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.5 1E-07 2.2E-12 81.5 4.3 36 26-62 19-54 (218)
113 cd03256 ABC_PhnC_transporter A 98.5 3E-07 6.4E-12 79.8 7.3 36 26-62 16-51 (241)
114 PRK11650 ugpC glycerol-3-phosp 98.5 1.4E-07 2.9E-12 86.6 5.4 49 25-81 18-66 (356)
115 PRK13650 cbiO cobalt transport 98.5 2.6E-07 5.7E-12 82.0 7.1 48 26-81 22-69 (279)
116 cd03230 ABC_DR_subfamily_A Thi 98.5 9.6E-07 2.1E-11 72.7 9.8 137 26-196 15-156 (173)
117 cd03222 ABC_RNaseL_inhibitor T 98.5 4.8E-07 1E-11 74.7 7.9 113 34-196 21-133 (177)
118 cd03298 ABC_ThiQ_thiamine_tran 98.5 2.9E-07 6.3E-12 78.2 6.6 31 32-62 18-48 (211)
119 PRK13635 cbiO cobalt transport 98.5 2.2E-07 4.9E-12 82.5 6.1 37 25-62 21-57 (279)
120 cd03259 ABC_Carb_Solutes_like 98.5 1.1E-07 2.3E-12 81.0 3.9 36 26-62 15-50 (213)
121 cd03258 ABC_MetN_methionine_tr 98.5 2.3E-06 5.1E-11 73.8 12.2 36 26-62 20-55 (233)
122 cd03224 ABC_TM1139_LivF_branch 98.5 2.1E-07 4.5E-12 79.7 5.5 36 26-62 15-50 (222)
123 PRK13646 cbiO cobalt transport 98.5 2.1E-07 4.5E-12 83.0 5.6 37 25-62 21-57 (286)
124 PRK13640 cbiO cobalt transport 98.5 3.8E-07 8.3E-12 81.1 7.0 36 26-62 22-57 (282)
125 cd03226 ABC_cobalt_CbiO_domain 98.5 6.5E-07 1.4E-11 75.8 8.1 36 26-62 15-50 (205)
126 PRK13652 cbiO cobalt transport 98.5 1.3E-07 2.8E-12 84.0 3.9 36 26-62 19-54 (277)
127 COG1118 CysA ABC-type sulfate/ 98.5 3E-07 6.6E-12 80.4 5.9 37 25-62 16-52 (345)
128 cd03261 ABC_Org_Solvent_Resist 98.5 3.2E-07 6.8E-12 79.4 6.1 36 26-62 15-50 (235)
129 cd03301 ABC_MalK_N The N-termi 98.5 1.3E-07 2.8E-12 80.5 3.6 36 26-62 15-50 (213)
130 PRK13647 cbiO cobalt transport 98.4 1.2E-07 2.7E-12 83.9 3.5 37 25-62 19-55 (274)
131 cd03265 ABC_DrrA DrrA is the A 98.4 2.9E-07 6.3E-12 78.8 5.6 36 26-62 15-50 (220)
132 TIGR02315 ABC_phnC phosphonate 98.4 3.8E-06 8.2E-11 73.0 12.7 36 26-62 17-52 (243)
133 PRK10584 putative ABC transpor 98.4 1.8E-07 3.9E-12 80.5 4.2 36 26-62 25-60 (228)
134 cd03237 ABC_RNaseL_inhibitor_d 98.4 4.6E-07 1E-11 78.9 6.8 31 32-62 19-49 (246)
135 TIGR02211 LolD_lipo_ex lipopro 98.4 1.9E-07 4E-12 80.0 4.2 36 26-62 20-55 (221)
136 COG4172 ABC-type uncharacteriz 98.4 1.8E-06 3.8E-11 78.3 10.5 136 33-196 308-488 (534)
137 cd03293 ABC_NrtD_SsuB_transpor 98.4 8.7E-08 1.9E-12 82.0 2.2 36 26-62 19-54 (220)
138 cd03235 ABC_Metallic_Cations A 98.4 7.4E-07 1.6E-11 75.9 7.8 36 26-62 14-49 (213)
139 TIGR00960 3a0501s02 Type II (G 98.4 3.6E-06 7.9E-11 71.8 12.0 36 26-62 18-53 (216)
140 cd03225 ABC_cobalt_CbiO_domain 98.4 3.9E-07 8.4E-12 77.4 6.0 36 26-62 16-51 (211)
141 cd03296 ABC_CysA_sulfate_impor 98.4 2.6E-07 5.7E-12 80.1 5.0 36 26-62 17-52 (239)
142 PRK09544 znuC high-affinity zi 98.4 2.3E-06 5E-11 74.8 10.9 36 26-62 19-54 (251)
143 PRK11022 dppD dipeptide transp 98.4 1.3E-06 2.7E-11 79.4 9.5 37 25-62 21-57 (326)
144 TIGR03864 PQQ_ABC_ATP ABC tran 98.4 3.4E-07 7.4E-12 79.2 5.6 36 26-62 16-51 (236)
145 TIGR01184 ntrCD nitrate transp 98.4 6.8E-07 1.5E-11 77.1 7.3 29 34-62 7-35 (230)
146 PRK11144 modC molybdate transp 98.4 4.1E-07 9E-12 83.4 6.3 31 32-62 18-48 (352)
147 PRK13633 cobalt transporter AT 98.4 5.1E-07 1.1E-11 80.3 6.5 49 25-81 24-72 (280)
148 cd03213 ABCG_EPDR ABCG transpo 98.4 1.7E-06 3.6E-11 72.7 9.3 36 25-61 23-58 (194)
149 cd03215 ABC_Carb_Monos_II This 98.4 2E-06 4.4E-11 71.4 9.7 48 26-81 15-62 (182)
150 PRK11247 ssuB aliphatic sulfon 98.4 4.1E-07 9E-12 79.8 5.7 37 25-62 26-62 (257)
151 PRK13637 cbiO cobalt transport 98.4 3.8E-07 8.2E-12 81.4 5.5 37 25-62 21-57 (287)
152 TIGR03608 L_ocin_972_ABC putat 98.4 3E-06 6.5E-11 71.7 10.8 36 26-62 13-48 (206)
153 PRK11248 tauB taurine transpor 98.4 2E-07 4.4E-12 81.7 3.7 36 26-62 16-51 (255)
154 cd03232 ABC_PDR_domain2 The pl 98.4 2.3E-06 5.1E-11 71.6 10.0 50 26-81 22-71 (192)
155 cd03247 ABCC_cytochrome_bd The 98.4 1.4E-06 3E-11 72.1 8.4 48 26-81 17-64 (178)
156 cd03223 ABCD_peroxisomal_ALDP 98.4 5.9E-06 1.3E-10 67.5 12.0 36 26-62 16-51 (166)
157 cd03268 ABC_BcrA_bacitracin_re 98.4 6.7E-07 1.5E-11 75.8 6.5 36 26-62 15-50 (208)
158 PRK11153 metN DL-methionine tr 98.4 3E-06 6.5E-11 77.5 11.1 36 26-62 20-55 (343)
159 PRK11308 dppF dipeptide transp 98.4 2.9E-06 6.3E-11 77.0 11.0 37 25-62 29-65 (327)
160 PRK10771 thiQ thiamine transpo 98.4 1.1E-06 2.5E-11 75.7 7.9 31 32-62 19-49 (232)
161 PRK11000 maltose/maltodextrin 98.4 2.2E-07 4.8E-12 85.7 3.5 36 26-62 18-53 (369)
162 cd03115 SRP The signal recogni 98.4 1.3E-05 2.9E-10 65.8 13.8 37 40-82 2-38 (173)
163 TIGR01277 thiQ thiamine ABC tr 98.4 3.4E-07 7.3E-12 78.0 4.3 31 32-62 18-48 (213)
164 PRK13634 cbiO cobalt transport 98.4 3.2E-07 6.9E-12 82.0 4.3 37 25-62 21-57 (290)
165 PRK10418 nikD nickel transport 98.4 8.5E-06 1.8E-10 71.3 13.2 36 26-62 18-53 (254)
166 PRK11629 lolD lipoprotein tran 98.4 4.4E-06 9.5E-11 72.2 11.3 37 25-62 23-59 (233)
167 PRK13537 nodulation ABC transp 98.4 2.1E-07 4.7E-12 83.7 3.2 38 24-62 20-57 (306)
168 PF00004 AAA: ATPase family as 98.4 3.4E-06 7.3E-11 65.6 9.6 114 41-198 1-115 (132)
169 TIGR02673 FtsE cell division A 98.4 3E-06 6.5E-11 72.1 10.0 36 26-62 17-52 (214)
170 TIGR01188 drrA daunorubicin re 98.4 5.2E-07 1.1E-11 81.1 5.5 36 26-62 8-43 (302)
171 cd03292 ABC_FtsE_transporter F 98.4 2.7E-07 5.8E-12 78.6 3.5 36 26-62 16-51 (214)
172 PRK13642 cbiO cobalt transport 98.4 5.9E-07 1.3E-11 79.7 5.7 36 26-62 22-57 (277)
173 PRK15079 oligopeptide ABC tran 98.4 3.7E-06 8E-11 76.5 11.0 50 25-82 35-84 (331)
174 PRK11300 livG leucine/isoleuci 98.4 1.1E-06 2.4E-11 76.9 7.4 36 26-62 20-55 (255)
175 TIGR01186 proV glycine betaine 98.4 4.2E-07 9E-12 83.4 4.9 49 26-82 8-56 (363)
176 cd03294 ABC_Pro_Gly_Bertaine T 98.4 2.3E-07 5E-12 82.0 3.0 35 27-62 40-74 (269)
177 PRK10851 sulfate/thiosulfate t 98.4 8E-07 1.7E-11 81.5 6.6 36 26-62 17-52 (353)
178 PRK10247 putative ABC transpor 98.4 1.3E-06 2.7E-11 75.2 7.4 37 25-62 21-57 (225)
179 PRK09452 potA putrescine/sperm 98.4 1.1E-07 2.3E-12 87.8 0.8 36 26-62 29-64 (375)
180 TIGR03410 urea_trans_UrtE urea 98.4 5.7E-07 1.2E-11 77.5 5.3 36 26-62 15-50 (230)
181 TIGR03415 ABC_choXWV_ATP choli 98.4 1.2E-06 2.5E-11 81.0 7.6 43 32-81 44-86 (382)
182 PRK11432 fbpC ferric transport 98.4 4.8E-08 1E-12 89.4 -1.5 36 26-62 21-56 (351)
183 cd03238 ABC_UvrA The excision 98.4 8.2E-06 1.8E-10 67.3 11.9 32 27-59 11-42 (176)
184 PRK09473 oppD oligopeptide tra 98.3 1.4E-06 3.1E-11 79.2 8.0 52 10-62 12-66 (330)
185 cd03219 ABC_Mj1267_LivG_branch 98.3 3.5E-07 7.5E-12 79.1 3.8 36 26-62 15-50 (236)
186 cd03231 ABC_CcmA_heme_exporter 98.3 2.9E-06 6.3E-11 71.6 9.3 36 26-62 15-50 (201)
187 PRK13648 cbiO cobalt transport 98.3 1E-06 2.2E-11 77.9 6.8 48 26-81 24-71 (269)
188 COG1123 ATPase components of v 98.3 2E-06 4.2E-11 81.6 8.9 37 25-62 23-59 (539)
189 PRK13538 cytochrome c biogenes 98.3 7.9E-07 1.7E-11 75.2 5.7 36 26-62 16-51 (204)
190 PRK10070 glycine betaine trans 98.3 1.4E-06 3.1E-11 80.9 7.9 35 27-62 44-78 (400)
191 cd00267 ABC_ATPase ABC (ATP-bi 98.3 9.7E-06 2.1E-10 65.5 11.8 123 32-196 19-141 (157)
192 COG4181 Predicted ABC-type tra 98.3 2.5E-06 5.5E-11 68.7 8.0 51 10-61 6-59 (228)
193 cd03299 ABC_ModC_like Archeal 98.3 2.8E-07 6E-12 79.8 2.8 30 33-62 20-49 (235)
194 TIGR03797 NHPM_micro_ABC2 NHPM 98.3 1.8E-06 3.9E-11 86.3 8.9 91 26-124 468-563 (686)
195 cd03269 ABC_putative_ATPase Th 98.3 2.7E-06 5.9E-11 72.2 8.8 31 32-62 20-50 (210)
196 TIGR01166 cbiO cobalt transpor 98.3 9.6E-07 2.1E-11 73.8 5.9 36 26-62 7-42 (190)
197 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.3 9E-06 2E-10 64.9 11.3 31 32-62 20-50 (144)
198 PRK10908 cell division protein 98.3 4.9E-07 1.1E-11 77.5 4.2 36 26-62 17-52 (222)
199 COG1117 PstB ABC-type phosphat 98.3 2.2E-06 4.8E-11 71.5 7.7 153 24-196 20-209 (253)
200 PRK10575 iron-hydroxamate tran 98.3 1.1E-06 2.4E-11 77.5 6.4 37 25-62 25-61 (265)
201 PRK13548 hmuV hemin importer A 98.3 8.1E-07 1.8E-11 78.0 5.5 36 26-62 17-52 (258)
202 TIGR00968 3a0106s01 sulfate AB 98.3 4.4E-07 9.5E-12 78.6 3.8 31 32-62 20-50 (237)
203 PRK13539 cytochrome c biogenes 98.3 2E-06 4.3E-11 72.9 7.7 36 26-62 17-52 (207)
204 cd03266 ABC_NatA_sodium_export 98.3 8.2E-07 1.8E-11 75.8 5.4 36 26-62 20-55 (218)
205 TIGR02868 CydC thiol reductant 98.3 2.1E-06 4.5E-11 83.2 8.8 48 26-81 350-397 (529)
206 PRK13651 cobalt transporter AT 98.3 7.9E-07 1.7E-11 80.0 5.4 37 25-62 21-57 (305)
207 COG4172 ABC-type uncharacteriz 98.3 7.4E-06 1.6E-10 74.4 11.5 55 7-62 3-60 (534)
208 TIGR03005 ectoine_ehuA ectoine 98.3 6.5E-07 1.4E-11 78.3 4.6 36 26-62 15-50 (252)
209 PRK11174 cysteine/glutathione 98.3 2.9E-06 6.2E-11 83.3 9.7 145 26-196 365-545 (588)
210 KOG0744 AAA+-type ATPase [Post 98.3 5.1E-06 1.1E-10 73.2 10.0 136 35-200 174-312 (423)
211 PRK09984 phosphonate/organopho 98.3 1.9E-06 4E-11 75.9 7.5 36 26-62 19-54 (262)
212 PRK15093 antimicrobial peptide 98.3 6.2E-06 1.3E-10 75.0 11.1 37 25-62 21-57 (330)
213 PRK11831 putative ABC transpor 98.3 7.2E-06 1.6E-10 72.4 11.2 36 26-62 22-57 (269)
214 cd03228 ABCC_MRP_Like The MRP 98.3 3.6E-06 7.7E-11 69.2 8.7 48 26-81 17-64 (171)
215 TIGR02770 nickel_nikD nickel i 98.3 9.9E-06 2.1E-10 69.8 11.8 29 34-62 8-36 (230)
216 cd03295 ABC_OpuCA_Osmoprotecti 98.3 1.1E-06 2.4E-11 76.3 5.9 36 26-62 16-51 (242)
217 PRK11176 lipid transporter ATP 98.3 3.8E-06 8.1E-11 82.3 10.3 147 26-196 358-540 (582)
218 cd03217 ABC_FeS_Assembly ABC-t 98.3 2.5E-06 5.4E-11 72.0 7.8 35 26-61 15-49 (200)
219 cd03218 ABC_YhbG The ABC trans 98.3 1.1E-06 2.3E-11 75.8 5.7 36 26-62 15-50 (232)
220 PRK13540 cytochrome c biogenes 98.3 9.7E-06 2.1E-10 68.3 11.4 48 26-81 16-63 (200)
221 cd03262 ABC_HisP_GlnQ_permease 98.3 2.3E-06 5E-11 72.8 7.6 36 26-62 15-50 (213)
222 PRK13632 cbiO cobalt transport 98.3 1.2E-06 2.6E-11 77.5 5.9 37 25-62 23-59 (271)
223 PF00448 SRP54: SRP54-type pro 98.3 1.7E-05 3.6E-10 66.7 12.5 90 39-151 2-95 (196)
224 cd03297 ABC_ModC_molybdenum_tr 98.3 1E-06 2.2E-11 75.1 5.2 28 34-62 20-47 (214)
225 PRK13536 nodulation factor exp 98.3 6.8E-07 1.5E-11 81.5 4.4 36 26-62 56-91 (340)
226 PRK11607 potG putrescine trans 98.3 2.9E-07 6.3E-12 85.1 1.8 36 26-62 34-69 (377)
227 PRK13541 cytochrome c biogenes 98.3 2E-06 4.3E-11 72.2 6.8 32 31-62 19-50 (195)
228 TIGR03265 PhnT2 putative 2-ami 98.3 2.4E-07 5.2E-12 84.9 1.2 36 26-62 19-54 (353)
229 PRK13645 cbiO cobalt transport 98.3 5.3E-07 1.1E-11 80.5 3.3 36 26-62 26-61 (289)
230 cd01132 F1_ATPase_alpha F1 ATP 98.3 4.5E-06 9.7E-11 73.1 8.9 129 7-152 40-174 (274)
231 cd03283 ABC_MutS-like MutS-lik 98.3 1.2E-05 2.6E-10 67.8 11.2 28 35-62 22-49 (199)
232 cd00009 AAA The AAA+ (ATPases 98.3 1.3E-05 2.8E-10 62.9 10.9 41 37-83 18-58 (151)
233 COG0396 sufC Cysteine desulfur 98.3 3.6E-06 7.7E-11 71.0 7.8 46 32-82 24-69 (251)
234 TIGR01288 nodI ATP-binding ABC 98.3 1.2E-06 2.6E-11 78.8 5.4 36 26-62 19-54 (303)
235 COG2274 SunT ABC-type bacterio 98.3 4.1E-06 9E-11 82.9 9.5 150 26-198 488-671 (709)
236 PRK14250 phosphate ABC transpo 98.3 3.3E-06 7.2E-11 73.3 7.9 36 26-62 18-53 (241)
237 PRK10261 glutathione transport 98.3 4.8E-06 1E-10 82.2 10.0 56 6-62 8-66 (623)
238 TIGR03375 type_I_sec_LssB type 98.3 3.3E-06 7.2E-11 84.4 9.0 48 26-81 480-527 (694)
239 PRK09536 btuD corrinoid ABC tr 98.2 1.1E-05 2.5E-10 75.0 11.7 36 26-62 18-53 (402)
240 PRK13631 cbiO cobalt transport 98.2 1.2E-06 2.7E-11 79.2 5.1 37 25-62 40-76 (320)
241 PRK13644 cbiO cobalt transport 98.2 2.3E-06 4.9E-11 75.9 6.7 36 26-62 17-52 (274)
242 cd01133 F1-ATPase_beta F1 ATP 98.2 6.9E-06 1.5E-10 72.0 9.5 132 7-153 40-177 (274)
243 TIGR03771 anch_rpt_ABC anchore 98.2 1.5E-05 3.2E-10 68.4 11.5 28 35-62 3-30 (223)
244 PRK10790 putative multidrug tr 98.2 4.4E-06 9.5E-11 82.0 9.3 48 26-81 356-403 (592)
245 PRK09493 glnQ glutamine ABC tr 98.2 1.8E-06 3.8E-11 74.9 5.8 36 26-62 16-51 (240)
246 PRK13649 cbiO cobalt transport 98.2 1.1E-06 2.4E-11 78.1 4.6 36 26-62 22-57 (280)
247 PRK15112 antimicrobial peptide 98.2 6E-06 1.3E-10 72.9 9.2 37 25-62 27-63 (267)
248 PRK10253 iron-enterobactin tra 98.2 3.9E-06 8.4E-11 74.0 7.9 36 26-62 22-57 (265)
249 KOG0061 Transporter, ABC super 98.2 2.8E-06 6.1E-11 83.3 7.7 35 27-62 46-80 (613)
250 TIGR03873 F420-0_ABC_ATP propo 98.2 2.6E-06 5.6E-11 74.7 6.6 36 26-62 16-51 (256)
251 TIGR02982 heterocyst_DevA ABC 98.2 1.6E-05 3.4E-10 68.1 11.3 36 26-62 20-55 (220)
252 TIGR02142 modC_ABC molybdenum 98.2 1.9E-06 4.1E-11 79.2 5.9 30 33-62 18-47 (354)
253 PRK13547 hmuV hemin importer A 98.2 9.1E-06 2E-10 71.9 10.1 36 26-62 16-51 (272)
254 PRK07721 fliI flagellum-specif 98.2 4.9E-05 1.1E-09 71.3 15.3 129 7-153 129-262 (438)
255 TIGR03796 NHPM_micro_ABC1 NHPM 98.2 5E-06 1.1E-10 83.4 9.3 48 26-81 494-541 (710)
256 cd03263 ABC_subfamily_A The AB 98.2 9.3E-07 2E-11 75.6 3.5 36 26-62 17-52 (220)
257 PRK11701 phnK phosphonate C-P 98.2 1.3E-05 2.8E-10 70.4 10.8 36 26-62 21-56 (258)
258 PRK12726 flagellar biosynthesi 98.2 2.2E-05 4.9E-10 71.6 12.4 93 35-152 203-298 (407)
259 PRK11614 livF leucine/isoleuci 98.2 4.2E-06 9E-11 72.5 7.5 36 26-62 20-55 (237)
260 TIGR01193 bacteriocin_ABC ABC- 98.2 4.6E-06 9.9E-11 83.6 8.9 48 26-81 489-536 (708)
261 TIGR03258 PhnT 2-aminoethylpho 98.2 4.1E-07 9E-12 83.6 1.3 36 26-62 20-55 (362)
262 cd03236 ABC_RNaseL_inhibitor_d 98.2 2.4E-05 5.3E-10 68.5 12.3 36 25-62 15-50 (255)
263 PRK10938 putative molybdenum t 98.2 1.4E-05 3E-10 76.7 11.7 37 25-62 17-53 (490)
264 TIGR02323 CP_lyasePhnK phospho 98.2 1.4E-05 2.9E-10 70.0 10.7 36 26-62 18-53 (253)
265 PRK13643 cbiO cobalt transport 98.2 1.6E-06 3.4E-11 77.5 4.6 48 26-81 21-68 (288)
266 COG1245 Predicted ATPase, RNas 98.2 1.5E-05 3.2E-10 73.4 10.9 140 32-194 361-515 (591)
267 PRK10895 lipopolysaccharide AB 98.2 4.4E-06 9.6E-11 72.5 7.3 36 26-62 18-53 (241)
268 COG4615 PvdE ABC-type sideroph 98.2 8E-06 1.7E-10 73.9 9.0 137 34-199 345-513 (546)
269 PRK09099 type III secretion sy 98.2 1.4E-05 3.1E-10 74.7 11.1 128 7-153 134-267 (441)
270 TIGR02203 MsbA_lipidA lipid A 98.2 8.7E-06 1.9E-10 79.6 10.1 47 27-81 348-394 (571)
271 KOG0058 Peptide exporter, ABC 98.2 1.4E-05 3.1E-10 77.4 11.1 59 24-90 481-541 (716)
272 PRK13638 cbiO cobalt transport 98.2 2.4E-06 5.1E-11 75.6 5.3 36 26-62 16-51 (271)
273 PRK13641 cbiO cobalt transport 98.2 1.4E-06 3.1E-11 77.7 3.8 48 26-81 22-69 (287)
274 cd01135 V_A-ATPase_B V/A-type 98.2 1.6E-05 3.4E-10 69.7 10.1 134 7-153 40-180 (276)
275 PRK13409 putative ATPase RIL; 98.2 3.3E-06 7.2E-11 82.5 6.5 31 32-62 359-389 (590)
276 TIGR02546 III_secr_ATP type II 98.2 1.3E-05 2.9E-10 74.9 10.3 54 7-62 116-169 (422)
277 TIGR03740 galliderm_ABC gallid 98.2 2.7E-06 6E-11 72.9 5.3 31 32-62 20-50 (223)
278 cd03369 ABCC_NFT1 Domain 2 of 98.2 1.3E-05 2.9E-10 67.8 9.4 36 26-62 23-58 (207)
279 TIGR02857 CydD thiol reductant 98.2 1.2E-05 2.6E-10 77.9 10.2 48 26-81 337-384 (529)
280 COG4167 SapF ABC-type antimicr 98.2 3.9E-05 8.5E-10 62.6 11.4 30 33-62 34-63 (267)
281 PRK13543 cytochrome c biogenes 98.2 1.2E-05 2.6E-10 68.5 9.1 36 26-62 26-61 (214)
282 COG2087 CobU Adenosyl cobinami 98.2 2.9E-05 6.3E-10 62.2 10.4 132 40-198 2-134 (175)
283 PF13173 AAA_14: AAA domain 98.2 1.3E-05 2.9E-10 62.5 8.5 38 38-82 2-39 (128)
284 PRK11264 putative amino-acid A 98.1 5.3E-06 1.1E-10 72.4 6.9 36 26-62 18-53 (250)
285 cd03233 ABC_PDR_domain1 The pl 98.1 3E-05 6.5E-10 65.5 11.3 36 26-62 22-57 (202)
286 cd03252 ABCC_Hemolysin The ABC 98.1 1.1E-05 2.4E-10 69.8 8.8 36 26-62 17-52 (237)
287 PRK11889 flhF flagellar biosyn 98.1 4.3E-05 9.4E-10 70.1 12.8 93 38-152 241-333 (436)
288 PTZ00454 26S protease regulato 98.1 7.7E-06 1.7E-10 76.0 8.1 30 33-62 174-203 (398)
289 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.1 3.5E-05 7.6E-10 66.1 11.7 36 26-62 37-72 (224)
290 COG4559 ABC-type hemin transpo 98.1 4.1E-05 9E-10 63.9 11.4 47 26-79 16-62 (259)
291 PRK13657 cyclic beta-1,2-gluca 98.1 1.1E-05 2.4E-10 79.1 9.5 47 27-81 351-397 (588)
292 PRK15056 manganese/iron transp 98.1 3E-05 6.5E-10 68.6 11.4 36 26-62 22-57 (272)
293 cd03244 ABCC_MRP_domain2 Domai 98.1 1.2E-05 2.6E-10 68.7 8.6 36 26-62 19-54 (221)
294 cd03253 ABCC_ATM1_transporter 98.1 8.4E-06 1.8E-10 70.5 7.6 36 26-62 16-51 (236)
295 cd03267 ABC_NatA_like Similar 98.1 9.1E-06 2E-10 70.3 7.8 36 26-62 36-71 (236)
296 PRK07594 type III secretion sy 98.1 1.1E-05 2.4E-10 75.2 8.8 127 7-153 126-259 (433)
297 cd03300 ABC_PotA_N PotA is an 98.1 3.8E-05 8.3E-10 66.3 11.6 31 32-62 20-50 (232)
298 TIGR01189 ccmA heme ABC export 98.1 2E-05 4.3E-10 66.3 9.6 36 26-62 15-50 (198)
299 COG1134 TagH ABC-type polysacc 98.1 7.7E-06 1.7E-10 69.6 6.9 41 26-69 42-82 (249)
300 PRK10416 signal recognition pa 98.1 3.9E-05 8.4E-10 69.3 11.9 43 36-85 112-154 (318)
301 TIGR02769 nickel_nikE nickel i 98.1 3.1E-05 6.6E-10 68.3 11.1 36 26-62 26-61 (265)
302 PRK10619 histidine/lysine/argi 98.1 2.6E-05 5.6E-10 68.4 10.5 36 26-62 20-55 (257)
303 PRK15439 autoinducer 2 ABC tra 98.1 1.1E-05 2.3E-10 77.9 8.7 36 26-62 26-61 (510)
304 PRK11160 cysteine/glutathione 98.1 1.2E-05 2.5E-10 78.8 9.1 48 26-81 355-402 (574)
305 COG1222 RPT1 ATP-dependent 26S 98.1 2.4E-05 5.2E-10 70.0 10.0 121 34-196 181-301 (406)
306 TIGR02204 MsbA_rel ABC transpo 98.1 2.2E-05 4.7E-10 76.9 10.9 48 26-81 355-402 (576)
307 cd03264 ABC_drug_resistance_li 98.1 3.4E-05 7.5E-10 65.5 10.8 35 26-62 15-49 (211)
308 PRK10261 glutathione transport 98.1 2.2E-05 4.7E-10 77.5 10.9 36 26-62 339-374 (623)
309 PRK09700 D-allose transporter 98.1 8.4E-06 1.8E-10 78.6 7.8 36 26-62 20-55 (510)
310 cd03250 ABCC_MRP_domain1 Domai 98.1 0.00011 2.4E-09 62.0 13.7 36 26-62 20-55 (204)
311 COG4555 NatA ABC-type Na+ tran 98.1 3.1E-05 6.7E-10 64.2 9.8 58 17-82 8-65 (245)
312 TIGR01846 type_I_sec_HlyB type 98.1 1.4E-05 3E-10 80.0 9.4 48 26-81 472-519 (694)
313 PRK10789 putative multidrug tr 98.1 1.8E-05 4E-10 77.3 10.1 36 26-62 330-365 (569)
314 PRK13546 teichoic acids export 98.1 3.5E-05 7.5E-10 67.9 10.9 36 26-62 39-74 (264)
315 PRK10762 D-ribose transporter 98.1 3.6E-06 7.8E-11 81.0 5.0 37 25-62 18-54 (501)
316 PRK10419 nikE nickel transport 98.1 4.3E-05 9.3E-10 67.5 11.5 36 26-62 27-62 (268)
317 PRK05688 fliI flagellum-specif 98.1 1.7E-05 3.6E-10 74.3 9.1 52 8-61 140-191 (451)
318 COG4152 ABC-type uncharacteriz 98.1 3E-06 6.4E-11 72.1 3.8 34 27-61 18-51 (300)
319 PRK13639 cbiO cobalt transport 98.1 9.6E-06 2.1E-10 71.9 7.2 36 26-62 17-52 (275)
320 TIGR00064 ftsY signal recognit 98.1 7.5E-05 1.6E-09 66.0 12.8 43 37-86 71-113 (272)
321 TIGR03499 FlhF flagellar biosy 98.1 1.6E-05 3.4E-10 70.7 8.6 43 36-82 192-234 (282)
322 cd03289 ABCC_CFTR2 The CFTR su 98.1 2.4E-05 5.1E-10 69.3 9.6 47 26-81 19-65 (275)
323 PRK07165 F0F1 ATP synthase sub 98.1 2.4E-05 5.3E-10 73.8 10.1 128 7-152 114-246 (507)
324 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.1 5.2E-05 1.1E-09 65.6 11.6 36 26-62 18-53 (238)
325 PRK12727 flagellar biosynthesi 98.1 5.8E-05 1.3E-09 71.8 12.6 95 34-151 346-440 (559)
326 CHL00059 atpA ATP synthase CF1 98.1 2E-05 4.3E-10 74.1 9.4 129 7-152 112-246 (485)
327 cd03254 ABCC_Glucan_exporter_l 98.1 3.9E-05 8.5E-10 65.9 10.7 36 26-62 18-53 (229)
328 PRK06936 type III secretion sy 98.1 1.2E-05 2.6E-10 75.0 7.8 127 7-152 133-265 (439)
329 TIGR03689 pup_AAA proteasome A 98.1 3.6E-05 7.9E-10 73.4 11.2 30 34-63 212-241 (512)
330 PRK06793 fliI flagellum-specif 98.1 3.5E-05 7.7E-10 71.9 10.9 125 9-153 129-260 (432)
331 TIGR03269 met_CoM_red_A2 methy 98.1 6E-05 1.3E-09 72.9 13.0 36 26-62 15-50 (520)
332 TIGR02324 CP_lyasePhnL phospho 98.1 7.8E-05 1.7E-09 63.9 12.3 36 26-62 23-58 (224)
333 TIGR01842 type_I_sec_PrtD type 98.1 2.3E-05 4.9E-10 76.2 10.0 36 26-62 333-368 (544)
334 TIGR03411 urea_trans_UrtD urea 98.1 4.7E-05 1E-09 66.1 11.0 36 26-62 17-52 (242)
335 TIGR00962 atpA proton transloc 98.1 1.8E-05 3.9E-10 75.2 8.8 128 8-152 133-266 (501)
336 cd03290 ABCC_SUR1_N The SUR do 98.1 1.9E-05 4.1E-10 67.4 8.3 36 26-62 16-51 (218)
337 PRK09580 sufC cysteine desulfu 98.0 2.3E-05 5.1E-10 68.2 8.9 35 26-61 16-50 (248)
338 PRK09700 D-allose transporter 98.0 1.3E-05 2.8E-10 77.3 7.9 36 26-62 278-313 (510)
339 PRK11124 artP arginine transpo 98.0 6.6E-05 1.4E-09 65.1 11.6 36 26-62 17-52 (242)
340 PRK03695 vitamin B12-transport 98.0 1.2E-05 2.7E-10 70.1 7.1 34 27-61 12-45 (248)
341 PRK10867 signal recognition pa 98.0 6.6E-05 1.4E-09 70.3 12.2 43 38-87 100-143 (433)
342 PRK11231 fecE iron-dicitrate t 98.0 8.9E-06 1.9E-10 71.2 6.1 36 26-62 17-52 (255)
343 COG1132 MdlB ABC-type multidru 98.0 2.5E-05 5.4E-10 76.4 9.8 91 26-124 344-440 (567)
344 COG4148 ModC ABC-type molybdat 98.0 6.6E-06 1.4E-10 71.3 5.0 157 23-197 11-191 (352)
345 COG4598 HisP ABC-type histidin 98.0 3.9E-05 8.5E-10 62.5 9.0 27 35-61 29-55 (256)
346 KOG0734 AAA+-type ATPase conta 98.0 1.1E-05 2.3E-10 75.6 6.6 116 31-193 332-447 (752)
347 TIGR03522 GldA_ABC_ATP gliding 98.0 2.6E-05 5.6E-10 70.1 9.0 36 26-62 17-52 (301)
348 TIGR01192 chvA glucan exporter 98.0 2.2E-05 4.7E-10 77.0 9.2 48 26-81 350-397 (585)
349 PRK08972 fliI flagellum-specif 98.0 2.1E-05 4.5E-10 73.3 8.5 53 8-62 134-186 (444)
350 PRK12597 F0F1 ATP synthase sub 98.0 2.4E-05 5.2E-10 73.6 8.9 131 7-153 114-251 (461)
351 TIGR03324 alt_F1F0_F1_al alter 98.0 3.2E-05 6.8E-10 73.1 9.5 128 9-153 135-268 (497)
352 PF01695 IstB_IS21: IstB-like 98.0 1.7E-05 3.6E-10 65.6 6.9 41 35-81 44-84 (178)
353 PRK05922 type III secretion sy 98.0 4.8E-05 1E-09 71.0 10.6 54 7-62 128-181 (434)
354 COG4618 ArpD ABC-type protease 98.0 3.7E-05 8E-10 71.7 9.6 43 32-81 356-398 (580)
355 TIGR01194 cyc_pep_trnsptr cycl 98.0 4.9E-05 1.1E-09 74.1 11.1 47 27-81 358-404 (555)
356 PRK13343 F0F1 ATP synthase sub 98.0 3E-05 6.5E-10 73.5 9.2 128 8-152 134-267 (502)
357 PRK09281 F0F1 ATP synthase sub 98.0 3.2E-05 7E-10 73.6 9.4 129 7-152 133-267 (502)
358 PLN03232 ABC transporter C fam 98.0 2.2E-05 4.9E-10 84.5 9.4 49 26-82 1251-1299(1495)
359 TIGR00958 3a01208 Conjugate Tr 98.0 1.6E-05 3.5E-10 79.7 7.9 48 26-81 496-543 (711)
360 PTZ00265 multidrug resistance 98.0 3.1E-05 6.8E-10 83.0 10.4 38 25-63 1182-1219(1466)
361 PRK08181 transposase; Validate 98.0 3.7E-05 8.1E-10 67.7 9.2 41 35-81 103-143 (269)
362 PLN03130 ABC transporter C fam 98.0 2.3E-05 5E-10 84.8 9.2 148 26-198 1254-1436(1622)
363 PRK06002 fliI flagellum-specif 98.0 4.9E-05 1.1E-09 71.1 10.2 54 7-62 136-189 (450)
364 TIGR03269 met_CoM_red_A2 methy 98.0 0.00011 2.4E-09 71.1 13.1 36 26-62 299-334 (520)
365 cd03243 ABC_MutS_homologs The 98.0 8.2E-05 1.8E-09 62.8 10.8 26 37-62 28-53 (202)
366 COG4988 CydD ABC-type transpor 98.0 5.4E-05 1.2E-09 71.9 10.5 152 21-195 331-515 (559)
367 PRK08927 fliI flagellum-specif 98.0 2.4E-05 5.3E-10 73.0 8.0 54 7-62 129-182 (442)
368 KOG0057 Mitochondrial Fe/S clu 98.0 3.2E-05 7E-10 72.7 8.7 47 27-82 368-414 (591)
369 cd01134 V_A-ATPase_A V/A-type 98.0 0.00015 3.3E-09 65.5 12.7 125 12-152 133-267 (369)
370 PRK12377 putative replication 98.0 4.8E-05 1E-09 66.2 9.2 37 39-81 102-138 (248)
371 PRK05703 flhF flagellar biosyn 98.0 3.9E-05 8.4E-10 72.0 9.2 89 36-150 219-310 (424)
372 KOG0065 Pleiotropic drug resis 98.0 1.9E-05 4.1E-10 81.1 7.6 36 26-62 806-841 (1391)
373 TIGR00955 3a01204 The Eye Pigm 98.0 4.3E-05 9.3E-10 75.4 10.0 37 25-62 39-75 (617)
374 PF02283 CobU: Cobinamide kina 98.0 2.4E-05 5.2E-10 63.9 6.8 127 41-198 1-128 (167)
375 cd03234 ABCG_White The White s 98.0 4E-05 8.6E-10 65.8 8.6 37 25-62 21-57 (226)
376 PRK15134 microcin C ABC transp 98.0 9E-05 2E-09 71.8 12.0 37 25-62 23-59 (529)
377 PRK08472 fliI flagellum-specif 98.0 9.5E-05 2.1E-09 69.1 11.5 54 7-62 128-181 (434)
378 PRK06835 DNA replication prote 97.9 8.9E-06 1.9E-10 73.7 4.6 38 38-81 183-220 (329)
379 cd01136 ATPase_flagellum-secre 97.9 4.5E-05 9.7E-10 68.8 8.9 54 7-62 40-93 (326)
380 PRK13545 tagH teichoic acids e 97.9 7.6E-05 1.6E-09 71.2 10.8 36 26-62 39-74 (549)
381 PRK13409 putative ATPase RIL; 97.9 7.8E-05 1.7E-09 73.0 11.3 35 26-62 89-123 (590)
382 PTZ00361 26 proteosome regulat 97.9 5.1E-05 1.1E-09 71.3 9.4 123 34-198 213-335 (438)
383 TIGR03305 alt_F1F0_F1_bet alte 97.9 4.9E-05 1.1E-09 71.1 9.3 132 7-153 109-246 (449)
384 cd03280 ABC_MutS2 MutS2 homolo 97.9 1.8E-05 3.9E-10 66.7 5.9 28 35-62 24-52 (200)
385 PRK15134 microcin C ABC transp 97.9 7.5E-05 1.6E-09 72.4 10.9 36 25-61 300-335 (529)
386 PRK08084 DNA replication initi 97.9 0.00012 2.6E-09 63.3 11.1 39 37-81 44-82 (235)
387 PRK11288 araG L-arabinose tran 97.9 4.7E-05 1E-09 73.3 9.4 36 26-62 19-54 (501)
388 cd03287 ABC_MSH3_euk MutS3 hom 97.9 0.00018 3.9E-09 61.6 11.9 123 34-196 27-155 (222)
389 PRK13549 xylose transporter AT 97.9 1E-05 2.2E-10 78.0 4.7 37 25-62 19-55 (506)
390 PF00931 NB-ARC: NB-ARC domain 97.9 5.2E-05 1.1E-09 67.3 8.9 122 36-195 17-139 (287)
391 TIGR03498 FliI_clade3 flagella 97.9 3.5E-05 7.5E-10 71.8 7.9 54 7-62 111-164 (418)
392 TIGR03497 FliI_clade2 flagella 97.9 4.1E-05 8.9E-10 71.3 8.2 54 7-62 108-161 (413)
393 PRK08149 ATP synthase SpaL; Va 97.9 3.5E-05 7.5E-10 71.9 7.6 53 8-62 123-175 (428)
394 PRK06921 hypothetical protein; 97.9 7.9E-05 1.7E-09 65.6 9.5 39 37-81 116-155 (266)
395 TIGR01425 SRP54_euk signal rec 97.9 0.00019 4.1E-09 67.0 12.4 47 38-91 100-146 (429)
396 PRK10982 galactose/methyl gala 97.9 2.5E-05 5.4E-10 75.0 6.8 36 26-62 13-48 (491)
397 PRK11288 araG L-arabinose tran 97.9 5.4E-05 1.2E-09 72.9 9.1 35 27-62 269-303 (501)
398 COG4987 CydC ABC-type transpor 97.9 0.00015 3.2E-09 68.3 11.5 166 11-198 337-536 (573)
399 PTZ00265 multidrug resistance 97.9 6.9E-05 1.5E-09 80.4 10.6 36 26-62 400-435 (1466)
400 PRK14974 cell division protein 97.9 0.00016 3.4E-09 65.7 11.3 50 38-94 140-192 (336)
401 PTZ00243 ABC transporter; Prov 97.9 5.6E-05 1.2E-09 81.6 9.8 49 26-82 1325-1373(1560)
402 PRK07196 fliI flagellum-specif 97.9 5.8E-05 1.2E-09 70.5 8.6 54 7-62 126-179 (434)
403 cd03282 ABC_MSH4_euk MutS4 hom 97.9 0.00019 4E-09 60.7 11.0 31 34-64 25-55 (204)
404 PRK14722 flhF flagellar biosyn 97.9 5.3E-05 1.2E-09 69.5 8.2 57 34-95 133-192 (374)
405 PRK10522 multidrug transporter 97.9 0.00017 3.7E-09 70.2 12.1 36 26-62 338-373 (547)
406 PRK09280 F0F1 ATP synthase sub 97.9 8.5E-05 1.8E-09 69.8 9.6 132 7-153 115-252 (463)
407 PRK06731 flhF flagellar biosyn 97.9 0.00046 9.9E-09 60.8 13.6 94 37-152 74-167 (270)
408 PRK08116 hypothetical protein; 97.9 0.00013 2.8E-09 64.4 10.2 38 38-81 114-151 (268)
409 TIGR03496 FliI_clade1 flagella 97.9 7.6E-05 1.6E-09 69.5 9.1 128 7-153 108-241 (411)
410 PF01637 Arch_ATPase: Archaeal 97.9 4.8E-05 1E-09 64.9 7.3 137 37-194 19-165 (234)
411 PRK12724 flagellar biosynthesi 97.9 0.00013 2.8E-09 67.7 10.4 43 35-82 220-262 (432)
412 PRK13549 xylose transporter AT 97.8 3.9E-05 8.6E-10 73.9 7.4 37 25-62 276-312 (506)
413 PRK07960 fliI flagellum-specif 97.8 3.1E-05 6.6E-10 72.4 6.3 54 7-62 146-199 (455)
414 TIGR01026 fliI_yscN ATPase Fli 97.8 7.6E-05 1.6E-09 70.1 8.9 54 7-62 134-187 (440)
415 PRK14258 phosphate ABC transpo 97.8 0.0003 6.5E-09 61.8 12.2 36 26-62 22-57 (261)
416 TIGR01039 atpD ATP synthase, F 97.8 7.1E-05 1.5E-09 70.1 8.6 132 7-153 114-251 (461)
417 PRK09376 rho transcription ter 97.8 0.00027 5.8E-09 64.9 12.1 43 19-63 152-194 (416)
418 KOG0733 Nuclear AAA ATPase (VC 97.8 6.5E-05 1.4E-09 71.5 8.2 116 34-194 219-336 (802)
419 PRK15439 autoinducer 2 ABC tra 97.8 4.8E-05 1E-09 73.4 7.7 34 27-61 279-312 (510)
420 PRK15064 ABC transporter ATP-b 97.8 0.00019 4.1E-09 69.6 11.9 37 25-62 15-51 (530)
421 TIGR00957 MRP_assoc_pro multi 97.8 8.5E-05 1.8E-09 80.3 10.3 49 26-82 1301-1349(1522)
422 TIGR02633 xylG D-xylose ABC tr 97.8 6E-05 1.3E-09 72.6 8.3 37 25-62 274-310 (500)
423 PRK06526 transposase; Provisio 97.8 7.2E-05 1.6E-09 65.4 7.9 40 35-80 95-134 (254)
424 KOG0727 26S proteasome regulat 97.8 0.00016 3.5E-09 61.9 9.6 124 34-199 185-308 (408)
425 PRK12723 flagellar biosynthesi 97.8 0.00021 4.5E-09 66.1 11.1 93 37-151 173-266 (388)
426 cd01128 rho_factor Transcripti 97.8 0.0004 8.7E-09 60.5 12.3 36 25-62 5-40 (249)
427 PRK12608 transcription termina 97.8 0.00023 4.9E-09 65.1 11.1 40 21-62 118-157 (380)
428 COG1474 CDC6 Cdc6-related prot 97.8 0.00022 4.9E-09 65.6 11.3 105 27-154 33-138 (366)
429 TIGR01042 V-ATPase_V1_A V-type 97.8 0.00015 3.2E-09 69.4 10.3 130 7-152 197-338 (591)
430 PF00308 Bac_DnaA: Bacterial d 97.8 0.00033 7.2E-09 59.9 11.6 39 39-81 35-73 (219)
431 KOG0055 Multidrug/pheromone ex 97.8 0.00014 3E-09 74.8 10.6 51 34-91 375-427 (1228)
432 PRK06820 type III secretion sy 97.8 0.00013 2.9E-09 68.2 9.8 54 7-62 134-187 (440)
433 TIGR01271 CFTR_protein cystic 97.8 0.00011 2.4E-09 79.2 10.5 48 26-82 1234-1281(1490)
434 PRK10762 D-ribose transporter 97.8 6.6E-05 1.4E-09 72.3 8.1 35 27-62 268-302 (501)
435 PRK06893 DNA replication initi 97.8 0.00017 3.6E-09 62.2 9.8 38 38-81 39-76 (229)
436 TIGR01241 FtsH_fam ATP-depende 97.8 0.00019 4.1E-09 69.0 11.2 116 39-196 89-204 (495)
437 TIGR01041 ATP_syn_B_arch ATP s 97.8 0.00012 2.6E-09 68.9 9.4 132 8-152 113-251 (458)
438 PLN03211 ABC transporter G-25; 97.8 7.3E-05 1.6E-09 74.1 8.4 36 26-62 83-118 (659)
439 COG1484 DnaC DNA replication p 97.8 0.00018 3.8E-09 63.0 9.9 41 35-81 102-142 (254)
440 PRK10938 putative molybdenum t 97.8 0.00015 3.3E-09 69.5 10.4 34 27-61 276-309 (490)
441 PRK08727 hypothetical protein; 97.8 0.00026 5.6E-09 61.2 10.8 38 38-81 41-78 (233)
442 TIGR02633 xylG D-xylose ABC tr 97.8 2E-05 4.3E-10 75.8 4.2 36 26-62 16-51 (500)
443 PRK04196 V-type ATP synthase s 97.8 0.0001 2.3E-09 69.5 8.9 132 8-152 115-253 (460)
444 PRK00771 signal recognition pa 97.8 0.00033 7.1E-09 65.9 12.1 51 37-94 94-147 (437)
445 TIGR02858 spore_III_AA stage I 97.8 0.00032 7E-09 61.8 11.3 36 25-62 100-135 (270)
446 CHL00060 atpB ATP synthase CF1 97.8 0.00029 6.2E-09 66.6 11.6 68 7-81 132-199 (494)
447 cd03278 ABC_SMC_barmotin Barmo 97.8 0.0004 8.8E-09 58.4 11.5 27 34-61 19-45 (197)
448 PRK03992 proteasome-activating 97.8 0.00012 2.7E-09 68.0 9.0 29 34-62 161-189 (389)
449 PF05729 NACHT: NACHT domain 97.8 0.00041 8.9E-09 55.9 11.1 25 39-63 1-25 (166)
450 PLN00020 ribulose bisphosphate 97.8 0.00019 4E-09 65.3 9.7 30 33-62 143-172 (413)
451 PRK11819 putative ABC transpor 97.8 0.00023 5E-09 69.4 11.2 38 24-62 20-57 (556)
452 TIGR00954 3a01203 Peroxysomal 97.8 0.00023 4.9E-09 70.8 11.3 37 25-62 466-502 (659)
453 COG1101 PhnK ABC-type uncharac 97.8 0.00058 1.3E-08 57.3 11.8 70 21-97 12-87 (263)
454 PTZ00185 ATPase alpha subunit; 97.8 0.00015 3.1E-09 68.6 9.2 136 7-153 160-303 (574)
455 PRK07952 DNA replication prote 97.8 2.5E-05 5.4E-10 67.8 3.9 36 39-80 100-135 (244)
456 PRK05642 DNA replication initi 97.8 0.00026 5.7E-09 61.2 10.3 37 39-81 46-82 (234)
457 COG0488 Uup ATPase components 97.8 9E-05 1.9E-09 71.2 8.0 49 32-82 342-394 (530)
458 TIGR01043 ATP_syn_A_arch ATP s 97.7 0.00046 9.9E-09 66.3 12.6 130 7-152 193-332 (578)
459 TIGR00956 3a01205 Pleiotropic 97.7 3E-05 6.5E-10 82.8 5.1 36 26-62 778-813 (1394)
460 PRK04192 V-type ATP synthase s 97.7 0.00051 1.1E-08 66.1 12.9 127 10-152 201-337 (586)
461 PF00006 ATP-synt_ab: ATP synt 97.7 0.00027 5.9E-09 60.1 9.9 112 22-152 1-118 (215)
462 PRK00411 cdc6 cell division co 97.7 0.0006 1.3E-08 63.5 13.1 95 39-152 56-151 (394)
463 PRK10982 galactose/methyl gala 97.7 0.00033 7.2E-09 67.3 11.7 36 26-62 263-298 (491)
464 CHL00176 ftsH cell division pr 97.7 0.0001 2.2E-09 72.5 8.1 114 39-194 217-330 (638)
465 COG2401 ABC-type ATPase fused 97.7 5.5E-05 1.2E-09 69.1 5.7 140 33-196 404-569 (593)
466 cd03227 ABC_Class2 ABC-type Cl 97.7 0.00042 9.2E-09 56.3 10.6 27 37-63 20-46 (162)
467 COG4136 ABC-type uncharacteriz 97.7 0.0012 2.5E-08 52.5 12.4 32 32-63 22-53 (213)
468 TIGR00959 ffh signal recogniti 97.7 0.00041 8.9E-09 65.0 11.6 43 38-86 99-141 (428)
469 TIGR01242 26Sp45 26S proteasom 97.7 0.00027 5.8E-09 65.3 10.3 29 34-62 152-180 (364)
470 KOG0731 AAA+-type ATPase conta 97.7 7.1E-05 1.5E-09 73.6 6.7 118 32-193 340-458 (774)
471 PLN03140 ABC transporter G fam 97.7 0.00013 2.7E-09 78.3 9.1 39 23-62 177-215 (1470)
472 COG1119 ModF ABC-type molybden 97.7 0.00054 1.2E-08 58.6 11.0 37 25-62 45-81 (257)
473 TIGR01257 rim_protein retinal- 97.7 0.00011 2.4E-09 80.3 8.6 49 25-81 1953-2001(2272)
474 PLN03073 ABC transporter F fam 97.7 0.00021 4.6E-09 71.4 10.0 52 26-81 192-243 (718)
475 KOG0055 Multidrug/pheromone ex 97.7 0.00034 7.3E-09 72.0 11.4 151 24-199 1003-1189(1228)
476 TIGR00767 rho transcription te 97.7 0.00015 3.3E-09 66.8 8.1 38 23-62 155-192 (415)
477 COG4178 ABC-type uncharacteriz 97.7 0.00046 1E-08 66.6 11.7 70 21-93 403-476 (604)
478 COG1137 YhbG ABC-type (unclass 97.7 1E-05 2.2E-10 66.9 0.4 57 34-97 26-84 (243)
479 PLN03232 ABC transporter C fam 97.7 0.00055 1.2E-08 74.0 13.5 36 26-62 632-667 (1495)
480 smart00534 MUTSac ATPase domai 97.7 0.0004 8.6E-09 57.8 9.8 25 40-64 1-25 (185)
481 PRK11147 ABC transporter ATPas 97.7 0.0003 6.5E-09 69.7 10.5 31 32-62 339-369 (635)
482 cd03281 ABC_MSH5_euk MutS5 hom 97.7 0.00039 8.4E-09 59.2 9.8 25 38-62 29-53 (213)
483 PRK10535 macrolide transporter 97.7 2.4E-05 5.3E-10 77.5 2.8 36 26-62 23-58 (648)
484 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00048 1E-08 65.7 11.4 29 34-62 255-283 (489)
485 KOG0736 Peroxisome assembly fa 97.7 0.00014 3.1E-09 70.9 7.8 119 30-192 697-816 (953)
486 COG4133 CcmA ABC-type transpor 97.7 0.00046 1E-08 56.7 9.6 43 33-82 23-65 (209)
487 KOG0060 Long-chain acyl-CoA tr 97.7 0.00025 5.5E-09 67.2 9.2 53 10-63 433-486 (659)
488 TIGR01187 potA spermidine/putr 97.7 1.6E-05 3.5E-10 72.1 1.4 45 139-196 118-162 (325)
489 PF04665 Pox_A32: Poxvirus A32 97.7 0.00048 1E-08 59.4 10.2 122 40-198 15-141 (241)
490 KOG0056 Heavy metal exporter H 97.7 0.00081 1.7E-08 62.9 12.2 92 21-121 548-646 (790)
491 COG4138 BtuD ABC-type cobalami 97.6 0.0012 2.6E-08 53.7 11.6 31 32-62 19-49 (248)
492 COG1157 FliI Flagellar biosynt 97.6 0.00066 1.4E-08 62.2 11.3 127 7-153 134-267 (441)
493 COG0488 Uup ATPase components 97.6 0.00055 1.2E-08 65.9 11.5 57 26-85 18-78 (530)
494 PRK10636 putative ABC transpor 97.6 0.00061 1.3E-08 67.5 12.2 36 26-62 16-51 (638)
495 PRK10636 putative ABC transpor 97.6 0.00019 4.1E-09 71.1 8.4 35 27-62 328-362 (638)
496 PLN03130 ABC transporter C fam 97.6 0.00088 1.9E-08 72.8 13.9 35 27-62 633-667 (1622)
497 PRK14088 dnaA chromosomal repl 97.6 0.00056 1.2E-08 64.7 10.9 38 40-81 132-169 (440)
498 PF05625 PAXNEB: PAXNEB protei 97.6 0.00058 1.2E-08 62.9 10.7 98 119-245 179-279 (363)
499 PRK00889 adenylylsulfate kinas 97.6 9.6E-05 2.1E-09 60.8 5.0 40 36-81 2-41 (175)
500 PRK12678 transcription termina 97.6 0.00026 5.6E-09 67.7 8.4 44 17-62 397-440 (672)
No 1
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=100.00 E-value=1.2e-53 Score=372.32 Aligned_cols=250 Identities=40% Similarity=0.709 Sum_probs=213.3
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
..++++.+.....|+||++.||.+|+|||+.|.+|||+|+||||||+||+++|.++++|...||.+++|+|||||++|++
T Consensus 7 a~~~~~~~~~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~ 86 (256)
T PF08423_consen 7 AAELLEQRKRWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSP 86 (256)
T ss_dssp HHHHHHHHHTS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-H
T ss_pred HHHHHHHhhcCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCH
Confidence 44678888889999999999999999999999999999999999999999999999998777888889999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHH
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKR 166 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r 166 (302)
+|+.+|++.+. ..+++.++|+++.++.+.+++.+++..+...+.+ .+++|||||||+++|+.++.+. +++.+|
T Consensus 87 ~Rl~~i~~~~~-~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~-----~~ikLIVIDSIaalfr~e~~~~-~~~~~R 159 (256)
T PF08423_consen 87 ERLQQIAERFG-LDPEEILDNIFVIRVFDLEELLELLEQLPKLLSE-----SKIKLIVIDSIAALFRSEFSGR-GDLAER 159 (256)
T ss_dssp HHHHHHHHHTT-S-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHH-----SCEEEEEEETSSHHHHHHSGST-TTHHHH
T ss_pred HHHHHHhhccc-cccchhhhceeeeecCCHHHHHHHHHHHHhhccc-----cceEEEEecchHHHHHHHHccc-hhhHHH
Confidence 99999998764 2334578999999999999999999999888875 5799999999999999887654 256789
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCc
Q 022155 167 SFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDF 246 (302)
Q Consensus 167 ~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~ 246 (302)
++.|.+++..|+++|++|+++||+|||++++++... .+ .....+|+||.+|+|++++||+|+|.+.
T Consensus 160 ~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~~~------------~~-~~~~~~PalG~~w~h~~~~Rl~l~k~~~- 225 (256)
T PF08423_consen 160 QRMLARLARILKRLARKYNIAVVVTNQVTTKIDSNS------------LF-DGDRLKPALGHSWSHAVTTRLFLSKGRG- 225 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT----------------S-STTSEEETTHHHHHHHSSEEEEEEECST-
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeeceeeecCCccc------------cc-ccccceecCcchhhhhccEEEEEEeCCC-
Confidence 999999999999999999999999999998876431 11 1246899999999999999999998543
Q ss_pred hhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccccC
Q 022155 247 VVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301 (302)
Q Consensus 247 ~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~~ 301 (302)
..|.++|.|||..|..++.|.|+++||+|++
T Consensus 226 ------------------------~~R~~~i~ksp~~p~~~~~f~It~~Gi~d~~ 256 (256)
T PF08423_consen 226 ------------------------SERVATIVKSPSLPEGSASFQITEDGIRDVK 256 (256)
T ss_dssp ------------------------TEEEEEEEECSSSSSEEEEEEEETTEEEE--
T ss_pred ------------------------CeEEEEEeECCCCCCceEEEEEeCCCccCCC
Confidence 4899999999999999999999999999974
No 2
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=100.00 E-value=1.5e-48 Score=350.36 Aligned_cols=250 Identities=29% Similarity=0.440 Sum_probs=217.5
Q ss_pred CccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCC
Q 022155 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFP 85 (302)
Q Consensus 6 ~~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~ 85 (302)
+..+++..+....+++||++.||.+|+|||+.|.+|||+|+|||||||||+|++.++++|...||..++|+|||+|++|+
T Consensus 94 ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~ 173 (344)
T PLN03187 94 TGSDALLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFR 173 (344)
T ss_pred cHHHHHhhhccCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCC
Confidence 34457777778899999999999999999999999999999999999999999999988876777778999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHH
Q 022155 86 MRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKK 165 (302)
Q Consensus 86 ~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~ 165 (302)
++|+.+++..+.. .++..++||++.++.+.+++.+++..+...+.+ .++++|||||++++|+.++.+. +++.+
T Consensus 174 peRl~~ia~~~g~-d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~-----~~~~LvVIDSital~r~~~~~r-g~l~~ 246 (344)
T PLN03187 174 PDRIVPIAERFGM-DADAVLDNIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFTGR-GELAE 246 (344)
T ss_pred HHHHHHHHHHcCC-ChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHhhhccccCc-cchHH
Confidence 9999999988753 345678999999999999998888888777764 5789999999999999877654 35677
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecC
Q 022155 166 RSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245 (302)
Q Consensus 166 r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~ 245 (302)
|++.+.+++..|+++++++|++||+|||++++.+.+ .++ +...+|++|..|+|++++|++|+|...
T Consensus 247 rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~------------~~~--~~~~~pagG~~~~h~~~~Rl~l~k~~~ 312 (344)
T PLN03187 247 RQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGG------------MFI--SDPKKPAGGHVLAHAATIRLMLRKGKG 312 (344)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcc------------ccc--CCCCCCCCchhhheeeeEEEEEEcCCC
Confidence 888899999999999999999999999999866431 122 245689999999999999999988533
Q ss_pred chhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccccC
Q 022155 246 FVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301 (302)
Q Consensus 246 ~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~~ 301 (302)
..|.++|+|||++|..++.|.|+++||.|++
T Consensus 313 -------------------------~~R~~~v~ksp~lp~~~~~f~It~~GI~d~~ 343 (344)
T PLN03187 313 -------------------------EQRVCKVFDAPNLPEAEAEFQITSGGIMDAK 343 (344)
T ss_pred -------------------------CeEEEEEEECCCCCCceEEEEEeCCCccCCC
Confidence 4799999999999999999999999999975
No 3
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=100.00 E-value=5.8e-49 Score=331.62 Aligned_cols=262 Identities=50% Similarity=0.878 Sum_probs=227.5
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHh
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTF 96 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~ 96 (302)
+++++||+..||..|+|||+.+.+|||+|++|+||||||+|++..+++|...||++++++||.||..|+..||.++...+
T Consensus 81 ~~~lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~ 160 (351)
T KOG1564|consen 81 RSKLTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTL 160 (351)
T ss_pred chhcccccHHHHHHhcCCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC-CCC-------CCCCcEEEEeCCCHHHHHHHHHH-HHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHH
Q 022155 97 RPS-NDH-------NPCDYIFVQSVHSVDQLLDIMPK-IESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRS 167 (302)
Q Consensus 97 ~~~-~~~-------~~l~~i~~~~~~~~~~l~~~l~~-l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~ 167 (302)
... .++ +.-++|++..+.+.+.+++++.. ++-+++ +.+++||||||++++|+.+++....+++.|.
T Consensus 161 ~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~-----r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r~ 235 (351)
T KOG1564|consen 161 PQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLN-----RKKIKLVIIDSVAALFRSEFDYNPSDLKKRA 235 (351)
T ss_pred ccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceec-----cCcceEEEEehhhHHHHHHhccChhhhhhHH
Confidence 543 221 23355999999999999988874 444444 4679999999999999999886656888999
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCch
Q 022155 168 FLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFV 247 (302)
Q Consensus 168 ~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~ 247 (302)
..|.++...|+.+|.+|+++|+++||+.+.....+...+++.++.-+.|..+ ...|+||.+|++++++|+++.|...
T Consensus 236 ~~l~rla~~Lr~LA~~~~~aVV~~NQVtd~~~~~~~~~~l~~~d~r~~w~sg-w~vPsLGL~WaN~v~tRl~l~r~~k-- 312 (351)
T KOG1564|consen 236 RHLFRLAGKLRQLASKFDLAVVCANQVTDRVETSDDLSGLRIGDYRYLWSSG-WVVPSLGLTWANCVSTRLLLSRSTK-- 312 (351)
T ss_pred HHHHHHHHHHHHHHHhcCccEEEeeccccccccccccCCccccchhhccccc-cccccccceeccccceeeeeeeccc--
Confidence 9999999999999999999999999999997777766777777776666554 4789999999999999999999442
Q ss_pred hcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCccccc
Q 022155 248 VRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGV 300 (302)
Q Consensus 248 ~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~ 300 (302)
+.+.+..|...|.++|+.||+.|++.|+|.|+..||+.+
T Consensus 313 --------------~~~sa~~~~~~R~l~VvySp~~p~~~~~~~It~eGI~~~ 351 (351)
T KOG1564|consen 313 --------------NCDSAVSRSAKRTLRVVYSPYLPPSSCEFMITAEGICAV 351 (351)
T ss_pred --------------cccchhhcccceEEEEEecCCCCCcceEEEEecceEecC
Confidence 124456678999999999999999999999999999864
No 4
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=100.00 E-value=1.7e-48 Score=348.04 Aligned_cols=250 Identities=28% Similarity=0.427 Sum_probs=216.2
Q ss_pred CccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCC
Q 022155 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFP 85 (302)
Q Consensus 6 ~~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~ 85 (302)
+..++++.+....+++||++.||.+|+||+++|.++||+||||+||||||++++.++++|...|+..++|+|||+|++|+
T Consensus 64 ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~ 143 (313)
T TIGR02238 64 TAFEISQKRKKVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFR 143 (313)
T ss_pred cHHHHHHhhccCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCC
Confidence 34467788888899999999999999999999999999999999999999999999888766666667999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHH
Q 022155 86 MRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKK 165 (302)
Q Consensus 86 ~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~ 165 (302)
++|+.+++..+.. .++..++++++.++.+.+++.+++..+...+.+ .++++|||||++++|+.++.+. +++.+
T Consensus 144 ~eRi~~~a~~~g~-d~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~-----~~~~LvVIDSisal~r~~~~~~-g~~~~ 216 (313)
T TIGR02238 144 PDRIRAIAERFGV-DPDAVLDNILYARAYTSEHQMELLDYLAAKFSE-----EPFRLLIVDSIMALFRVDFSGR-GELSE 216 (313)
T ss_pred HHHHHHHHHHcCC-ChHHhcCcEEEecCCCHHHHHHHHHHHHHHhhc-----cCCCEEEEEcchHhhhhhccCc-cchHH
Confidence 9999999988753 345678999999999999999888888877764 5789999999999999877653 35677
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecC
Q 022155 166 RSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245 (302)
Q Consensus 166 r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~ 245 (302)
|++.+.+++..|+++|++++++||+|||++++.+... ++. ..+.+|+||..|+|++++||+|+|...
T Consensus 217 r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~~~------------~~~-~~~~~p~gG~~~~h~~~~Rl~l~k~~~ 283 (313)
T TIGR02238 217 RQQKLAQMLSRLNKISEEFNVAVFVTNQVQADPGATM------------TFI-ADPKKPIGGHVLAHASTTRILLRKGRG 283 (313)
T ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEECceEecCCccc------------ccC-CCCccCcchhhhhhheeEEEEEEecCC
Confidence 8888999999999999999999999999998765310 121 136789999999999999999998543
Q ss_pred chhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCccccc
Q 022155 246 FVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGV 300 (302)
Q Consensus 246 ~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~ 300 (302)
..|.++|+|||+.|..++.|.|+++||+|+
T Consensus 284 -------------------------~~R~~~~~~sp~~p~~~~~f~i~~~Gi~~~ 313 (313)
T TIGR02238 284 -------------------------EERVAKLYDSPDMPEAEASFQITEGGIADA 313 (313)
T ss_pred -------------------------CeEEEEEeeCCCCCCeEEEEEEeCCcccCC
Confidence 479999999999999999999999999985
No 5
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=6.5e-50 Score=332.91 Aligned_cols=249 Identities=29% Similarity=0.476 Sum_probs=228.2
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR 87 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~ 87 (302)
-++++++....+|+||+..||.+|+|||+.=.++||+|.+|+||||+++++|..+++|...||..++++|||||++|.++
T Consensus 85 ~e~le~r~~v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpd 164 (335)
T KOG1434|consen 85 LELLEQRKTVGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPD 164 (335)
T ss_pred HHHHhhhhccceeecchHHHhhhhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHH
Q 022155 88 RLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRS 167 (302)
Q Consensus 88 rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~ 167 (302)
|+.+|++.+. ..++..++||++.++.+.++..+++..+.+.+.+ +.+.+|||||||.++|+.+++++. ++.+|+
T Consensus 165 Ri~~IAe~~~-~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se----~g~~rlvIVDsIma~FRvDy~grg-eLseRq 238 (335)
T KOG1434|consen 165 RIKDIAERFK-VDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSE----HGKYRLVIVDSIMALFRVDYDGRG-ELSERQ 238 (335)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh----cCcEEEEEEeceehheeecccccc-cHHHHH
Confidence 9999998865 3455789999999999999999999999999986 568899999999999999999874 899999
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCch
Q 022155 168 FLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFV 247 (302)
Q Consensus 168 ~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~ 247 (302)
+.|..++.+|.+||.+||++|++|||+.+++...- +|.+ ...+|++|++|+|+.++|++|.|...
T Consensus 239 qkLn~ml~kl~~laeefnvAVfltNQvttdpga~~------------~f~s-~~~kp~gGh~~aHAsttRlilrkgrg-- 303 (335)
T KOG1434|consen 239 QKLNQMLQKLNKLAEEFNVAVFLTNQVTTDPGAGM------------TFAS-QDLKPAGGHSWAHASTTRLILRKGRG-- 303 (335)
T ss_pred HHHHHHHHHHHHHHHhccEEEEEecceecCCcccc------------cccc-cccCccccchhhhhhheeEEEEcCCc--
Confidence 99999999999999999999999999999887531 2222 34899999999999999999998643
Q ss_pred hcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCccccc
Q 022155 248 VRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGV 300 (302)
Q Consensus 248 ~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~ 300 (302)
.+|.+++.+||..|..++.|.|++.||.|.
T Consensus 304 -----------------------~eR~Akl~dSP~mpe~e~~y~It~~Gi~ds 333 (335)
T KOG1434|consen 304 -----------------------DERVAKLYDSPSMPEAEASYVITPGGIRDS 333 (335)
T ss_pred -----------------------ceeeeecccCCCCCcceEEEEEcCCccccC
Confidence 689999999999999999999999999986
No 6
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=100.00 E-value=1.1e-46 Score=338.81 Aligned_cols=249 Identities=29% Similarity=0.471 Sum_probs=214.9
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR 87 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~ 87 (302)
.++++.+....+++||++.||.+|+||+++|.+++|+|+||+|||+||++++.++++|...|+..++|+|||+|++|+++
T Consensus 93 ~~~~~~~~~~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~e 172 (342)
T PLN03186 93 SQLHAQRQEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQ 172 (342)
T ss_pred HHHhhcccCcceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHH
Confidence 34677777889999999999999999999999999999999999999999999988876666666799999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHH
Q 022155 88 RLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRS 167 (302)
Q Consensus 88 rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~ 167 (302)
|+.+++..+.. .++..++++++.++.+.+++.+++..+...+.+ .++++|||||++++|+.++.+. +++.+|+
T Consensus 173 Rl~qia~~~~~-~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~-----~~~~LIVIDSI~alfr~~~~~~-g~l~~r~ 245 (342)
T PLN03186 173 RLIQIAERFGL-NGADVLENVAYARAYNTDHQSELLLEAASMMAE-----TRFALMIVDSATALYRTEFSGR-GELSARQ 245 (342)
T ss_pred HHHHHHHHcCC-ChhhhccceEEEecCCHHHHHHHHHHHHHHhhc-----cCCCEEEEeCcHHHHHHHhcCC-ccHHHHH
Confidence 99999988653 344578999999999999988888887777654 5789999999999998877654 3556788
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCch
Q 022155 168 FLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFV 247 (302)
Q Consensus 168 ~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~ 247 (302)
+.|.+++..|+++|++++++||+|||++++++... ++ .++..+|+||..|+|++++||+|+|...
T Consensus 246 ~~L~~~l~~L~~lA~~~~vaVviTNqv~~~~~~~~------------~~-~~~~~~P~gG~~~~h~~~tRl~L~k~~~-- 310 (342)
T PLN03186 246 MHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSA------------FF-AGPQLKPIGGNIMAHASTTRLALRKGRG-- 310 (342)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcCEEEccCCcc------------cc-CCCccccchhHHHHhhccEEEEEEecCC--
Confidence 88999999999999999999999999998775320 12 1345699999999999999999998432
Q ss_pred hcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccccC
Q 022155 248 VRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301 (302)
Q Consensus 248 ~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~~ 301 (302)
..|.++|.|||+.|..++.|.|+++||+++.
T Consensus 311 -----------------------~~R~~~v~ksp~~p~~e~~F~I~~~Gi~~~~ 341 (342)
T PLN03186 311 -----------------------ENRICKVISSPCLPEAEARFSISSEGVTDVK 341 (342)
T ss_pred -----------------------CeEEEEEEECCCCCCeEEEEEEECCceecCC
Confidence 5799999999999999999999999999875
No 7
>PTZ00035 Rad51 protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=333.50 Aligned_cols=251 Identities=27% Similarity=0.447 Sum_probs=216.7
Q ss_pred CccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCC
Q 022155 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFP 85 (302)
Q Consensus 6 ~~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~ 85 (302)
+..++++.+....+++||++.||.+|+|||++|++++|+|+||+||||||++++.++++|...|+..++|+|||+|++|+
T Consensus 86 ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~ 165 (337)
T PTZ00035 86 SATEYLEARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFR 165 (337)
T ss_pred CHHHHHHhhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCC
Confidence 44457888888999999999999999999999999999999999999999999999887766666667999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHH
Q 022155 86 MRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKK 165 (302)
Q Consensus 86 ~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~ 165 (302)
++|+.++++.+.. .++..++|+.+.++.+.+++.+++..+...+.+ .++++|||||++++|+.++.+. +++..
T Consensus 166 ~eri~~ia~~~g~-~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~-----~~~~lvVIDSital~r~~~~~~-~~~~~ 238 (337)
T PTZ00035 166 PERIVQIAERFGL-DPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAE-----ERFALLIVDSATALFRVDYSGR-GELAE 238 (337)
T ss_pred HHHHHHHHHHhCC-ChHhHhhceEEEccCCHHHHHHHHHHHHHHhhc-----cCccEEEEECcHHhhhhhccCc-ccHHH
Confidence 9999999988653 334678999999999999988888887777754 5789999999999998877654 24677
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecC
Q 022155 166 RSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245 (302)
Q Consensus 166 r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~ 245 (302)
|++.+.+++..|+++|++++++||+|||++++++... ++ .+...+|++|..|+|++++||+|+|...
T Consensus 239 r~~~l~~~~~~L~~la~~~~vavvvtNqv~~~~~~~~------------~~-~~~~~~p~gG~~~~h~~~~Rl~l~k~~~ 305 (337)
T PTZ00035 239 RQQHLGKFLRALQKLADEFNVAVVITNQVMADVDGAS------------MF-VADPKKPIGGHIIAHASTTRLSLRKGRG 305 (337)
T ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEecceEEecCCcc------------cc-CCCCccCCchHHHHhheeEEEEEEecCC
Confidence 8888999999999999999999999999998765311 11 1246789999999999999999998543
Q ss_pred chhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccccC
Q 022155 246 FVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301 (302)
Q Consensus 246 ~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~~ 301 (302)
..|.++|+|||+.|..++.|+|+++||++++
T Consensus 306 -------------------------~~R~~~i~ksp~~p~~~~~f~It~~Gi~~~~ 336 (337)
T PTZ00035 306 -------------------------EQRICKIYDSPNLPESEAVFAISEGGIIDAK 336 (337)
T ss_pred -------------------------CeeEEEEEECCCCCCeeEEEEEeCCccccCC
Confidence 4799999999999999999999999999986
No 8
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=100.00 E-value=9.7e-45 Score=324.81 Aligned_cols=250 Identities=28% Similarity=0.470 Sum_probs=213.2
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR 87 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~ 87 (302)
.++++.+....+++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++++...|+.+.+|+|||+|+.|+++
T Consensus 66 ~~l~~~~~~~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~ 145 (316)
T TIGR02239 66 TEFHQRRQEVIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPE 145 (316)
T ss_pred HHHHhcccccceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHH
Confidence 34677777889999999999999999999999999999999999999999999887776667656689999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHH
Q 022155 88 RLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRS 167 (302)
Q Consensus 88 rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~ 167 (302)
|+.++++.+.. .++..++++++.++.+.+++.+++..+..++.+ .++++|||||++++|+.++.+. +++..|+
T Consensus 146 Rl~~ia~~~~~-~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~LvVIDSI~al~r~~~~~~-~~~~~rq 218 (316)
T TIGR02239 146 RLLAIAERYGL-NPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSE-----SRFALLIVDSATALYRTDFSGR-GELSARQ 218 (316)
T ss_pred HHHHHHHHcCC-ChHHhhccEEEEecCChHHHHHHHHHHHHhhcc-----CCccEEEEECcHHHhhhhcCCc-chHHHHH
Confidence 99999988653 334678899999999988888888887777653 5789999999999998877654 3556777
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCch
Q 022155 168 FLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFV 247 (302)
Q Consensus 168 ~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~ 247 (302)
..|.+++..|+++|++++++||+|||++++++...+ ++. +...+|+||..|+|++++||+|+|...
T Consensus 219 ~~l~~~~~~L~~la~~~~vavv~tNqv~~~~~~~~~-----------~~~-g~~~~p~gG~~~~h~~~~ri~l~k~~~-- 284 (316)
T TIGR02239 219 MHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGS-----------MFA-GDPKKPIGGNIMAHASTTRLSLRKGRG-- 284 (316)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEECceEEecCCccc-----------ccc-CCCCcCCchHHHHhhccEEEEEEecCC--
Confidence 778999999999999999999999999987754210 111 246889999999999999999998543
Q ss_pred hcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccccC
Q 022155 248 VRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301 (302)
Q Consensus 248 ~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~~ 301 (302)
..|.++++|||+.|..++.|+|+++||++++
T Consensus 285 -----------------------~~R~~~v~ksp~~p~~~~~f~i~~~Gi~~~~ 315 (316)
T TIGR02239 285 -----------------------EQRICKIYDSPCLPESEAMFAIYEDGIGDPK 315 (316)
T ss_pred -----------------------CeEEEEEEECCCCCCeEEEEEEeCCceecCC
Confidence 4799999999999999999999999999976
No 9
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=100.00 E-value=9.4e-43 Score=314.10 Aligned_cols=247 Identities=32% Similarity=0.474 Sum_probs=209.1
Q ss_pred CccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCC
Q 022155 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFP 85 (302)
Q Consensus 6 ~~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~ 85 (302)
++.+++..+....+++||++.||++|+||+++|.+++|+|+||+|||+||++++.+++++...|+...+|+|||+|++|+
T Consensus 70 t~~~l~~~~ks~~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~ 149 (317)
T PRK04301 70 TALEVLERRKNVGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFR 149 (317)
T ss_pred cHHHHHHhhccCCccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcC
Confidence 34456666677889999999999999999999999999999999999999999999887655566677999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHH
Q 022155 86 MRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKK 165 (302)
Q Consensus 86 ~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~ 165 (302)
++|+.+++..+.. .++..++++++.++.+.+++..++..+..++.+ ..++++|||||++++++.++.+.. +..+
T Consensus 150 ~~rl~~~~~~~g~-~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~----~~~~~lvVIDSisa~~~~~~~~~~-~~~~ 223 (317)
T PRK04301 150 PERIEQMAEALGL-DPDEVLDNIHVARAYNSDHQMLLAEKAEELIKE----GENIKLVIVDSLTAHFRAEYVGRG-NLAE 223 (317)
T ss_pred HHHHHHHHHHcCC-ChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhc----cCceeEEEEECchHHhhhhccCCc-cHHH
Confidence 9999999987653 344567889999988888777777788777753 357899999999999988766542 4566
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecC
Q 022155 166 RSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245 (302)
Q Consensus 166 r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~ 245 (302)
|++.+.+++..|+++|++++++||+|||+.+.....+ +....|++|..|+|++++||+|.|...
T Consensus 224 r~~~l~~~~~~L~~la~~~~vavl~tnqv~~~~~~~~----------------~~~~~~~~G~~~~~~~~~rl~l~k~~~ 287 (317)
T PRK04301 224 RQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFF----------------GDPTQPIGGHILGHTATFRIYLRKSKG 287 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEeceEEecccccc----------------CccccCCcchHhHhheeEEEEEEecCC
Confidence 7777889999999999999999999999987654321 245789999999999999999998533
Q ss_pred chhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccc
Q 022155 246 FVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFG 299 (302)
Q Consensus 246 ~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~ 299 (302)
..|.++|+|+|+.|..++.|+|+++||.+
T Consensus 288 -------------------------~~R~~~v~k~~~~~~~~~~f~I~~~Gi~~ 316 (317)
T PRK04301 288 -------------------------NKRIARLVDSPHLPEGEAVFRITEEGIRD 316 (317)
T ss_pred -------------------------CceEEEEEeCCCCCCceEEEEEeCCcccC
Confidence 47999999999999889999999999986
No 10
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=100.00 E-value=1.1e-42 Score=313.20 Aligned_cols=247 Identities=31% Similarity=0.477 Sum_probs=208.2
Q ss_pred CccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCC
Q 022155 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFP 85 (302)
Q Consensus 6 ~~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~ 85 (302)
++.+++..+....+++||++.+|.+|+||++.|.+++|+|+||+||||||+++|.++++|...|+.+++|+|||+|++|+
T Consensus 63 t~~~~~~~~~s~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~ 142 (310)
T TIGR02236 63 TADDVLERRKTIGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFR 142 (310)
T ss_pred CHHHHHHhhccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCC
Confidence 44456667778889999999999999999999999999999999999999999999987765666666999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCC-CeeEEEEechhhhhhhccCCChhhHH
Q 022155 86 MRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRL-PIRLIVIDSIAALFRSDFDNTMDDLK 164 (302)
Q Consensus 86 ~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~-~~~lvVIDsi~~~~~~~~~~~~~~~~ 164 (302)
++|+.+++..+... .+..++++++.++.+.++...++..+.+++.+ .. ++++|||||++++++.++.+. ++..
T Consensus 143 ~~rl~~~~~~~gl~-~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~----~~~~~~lVVIDSisa~~r~e~~~~-~~~~ 216 (310)
T TIGR02236 143 PERIMQMAEARGLD-PDEVLKNIYVARAYNSNHQMLLVEKAEDLIKE----LNNPVKLLIVDSLTSHFRAEYVGR-GALA 216 (310)
T ss_pred HHHHHHHHHHcCCC-HHHHhhceEEEecCCHHHHHHHHHHHHHHHHh----cCCCceEEEEecchHhhhHhhcCc-hhHH
Confidence 99999998875432 22356789998888877777777777777765 22 479999999999998877654 2466
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEec
Q 022155 165 KRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNE 244 (302)
Q Consensus 165 ~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~ 244 (302)
+|++.+.+++..|++++++++++||+|||++++.+..+ +...+|++|..|+|++++||+|+|..
T Consensus 217 ~r~~~l~~~~~~L~~~a~~~~~~v~~tnqv~~~~~~~~----------------~~~~~~~~G~~~~h~~~~rl~l~~~~ 280 (310)
T TIGR02236 217 ERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFF----------------GDPTRPIGGHILGHAATFRVYLRKGK 280 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcEEEEeceeeecCcccc----------------CccccCCcchhhhhheeEEEEEEecC
Confidence 78888899999999999999999999999998764321 23568999999999999999999843
Q ss_pred CchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccc
Q 022155 245 DFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFG 299 (302)
Q Consensus 245 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~ 299 (302)
. ..|.++|.|||+.|..++.|+|+++||++
T Consensus 281 ~-------------------------~~R~~~~~k~~~~~~~~~~f~i~~~Gi~~ 310 (310)
T TIGR02236 281 G-------------------------DKRIARLVDSPHLPEGEAVFRITEKGIED 310 (310)
T ss_pred C-------------------------CeEEEEEEECCCCCCeeEEEEEeCCCccC
Confidence 2 47999999999999999999999999975
No 11
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=100.00 E-value=5.9e-42 Score=296.91 Aligned_cols=235 Identities=36% Similarity=0.591 Sum_probs=197.5
Q ss_pred cccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCC
Q 022155 20 CTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPS 99 (302)
Q Consensus 20 i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~ 99 (302)
+|||++.||++|+||+++|++++|+|+||+|||+||++++.+++.+...++...+|+||++|++|+.+|+.++.+.+..
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~- 79 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGL- 79 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhcc-
Confidence 5899999999999999999999999999999999999999887665444444558999999999999999999877554
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHH
Q 022155 100 NDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKA 179 (302)
Q Consensus 100 ~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~ 179 (302)
.++..++++++.++.+.+++.+++..+...+.+ ..++++|||||++++++.++.+.. +...|.+.+.+++..|++
T Consensus 80 ~~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~----~~~~~liVIDSis~~~~~~~~~~~-~~~~r~~~l~~~~~~L~~ 154 (235)
T cd01123 80 DPEEVLDNIYVARAYNSDHQLQLLEELEAILIE----SSRIKLVIVDSVTALFRAEFDGRG-ELAERQQHLAKLLRTLKR 154 (235)
T ss_pred ChHhHhcCEEEEecCCHHHHHHHHHHHHHHHhh----cCCeeEEEEeCcHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHH
Confidence 334578899999999999999899988888875 338899999999999876654432 245677789999999999
Q ss_pred HHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccccccCCCC
Q 022155 180 MAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGVG 259 (302)
Q Consensus 180 la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~ 259 (302)
+|++++++||+|||+....+... . ..+...+|+||..|+|++++|+++++...
T Consensus 155 la~~~~~avl~tn~~~~~~~~~~------------~-~~~~~~~p~lG~~w~~~v~~Rl~l~~~~~-------------- 207 (235)
T cd01123 155 LADEFNVAVVITNQVTARPDGAA------------M-FGGDPKKPAGGNIWAHASTTRLYLRKGRG-------------- 207 (235)
T ss_pred HHHHhCCEEEEeccEeecCCccc------------c-cCCCCeeccCccHhhCCceEEEEEEECCC--------------
Confidence 99999999999999987654321 0 01235689999999999999999998643
Q ss_pred CCCCCCcccccceEEEEEEECCCCCCceeeEEEecCccc
Q 022155 260 GSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVF 298 (302)
Q Consensus 260 ~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~ 298 (302)
..|.++|+|+|..|...+.|+|+++||+
T Consensus 208 -----------~~r~~~i~k~~~~~~~~~~f~It~~Gi~ 235 (235)
T cd01123 208 -----------EERIAKIVDSPHLPEGEAVFAITEEGIR 235 (235)
T ss_pred -----------CceEEEEeeCCCCCCceEEEEEeCCccC
Confidence 4699999999999988999999999985
No 12
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.1e-38 Score=275.88 Aligned_cols=234 Identities=31% Similarity=0.377 Sum_probs=203.0
Q ss_pred cCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHH
Q 022155 12 DNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQ 91 (302)
Q Consensus 12 ~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~ 91 (302)
........++||+..||.+|+||+|+|.|+||+||+||||||+|+|++++++ ..|+ +|+|||+|++|+++|+.+
T Consensus 34 ~~~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq---~~g~---~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 34 ERREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQ---KPGG---KAAFIDTEHALDPERAKQ 107 (279)
T ss_pred HHhhccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhh---cCCC---eEEEEeCCCCCCHHHHHH
Confidence 3445589999999999999999999999999999999999999999999998 4566 899999999999999999
Q ss_pred HHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHH
Q 022155 92 LSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFF 171 (302)
Q Consensus 92 i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~ 171 (302)
++... ++++++.++.+.++..+++..+.....+ +++||||||++++|+.++.+. ..+..|++.|.
T Consensus 108 l~~~~--------~d~l~v~~~~~~e~q~~i~~~~~~~~~~------~i~LvVVDSvaa~~r~~~~~d-~~~~~~~r~ls 172 (279)
T COG0468 108 LGVDL--------LDNLLVSQPDTGEQQLEIAEKLARSGAE------KIDLLVVDSVAALVRAEEIED-GHLGLRARLLS 172 (279)
T ss_pred HHHhh--------hcceeEecCCCHHHHHHHHHHHHHhccC------CCCEEEEecCcccchhhhcCc-chHHHHHHHHH
Confidence 99763 6899999999999988888877666542 689999999999999887663 35678888999
Q ss_pred HHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhccc
Q 022155 172 KISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVREN 251 (302)
Q Consensus 172 ~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~ 251 (302)
+.++.|..++++++++||++||+..+++.+++ .+..|.+|....|..++|+.+.|....+ .+
T Consensus 173 ~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~----------------~~~~~~GG~~L~~~as~rl~l~k~~~~~-~~- 234 (279)
T COG0468 173 KALRKLTRLANKYNTAVIFTNQVRAKIGVMFG----------------DPETTTGGNALKFYASVRLDLRRIESLK-ED- 234 (279)
T ss_pred HHHHHHHHHHHHcCcEEEEECceeeecCcccC----------------CcccCCCchHHHhhhheEEEEeeccccc-cc-
Confidence 99999999999999999999999998876432 3578999999999999999999985422 00
Q ss_pred ccccCCCCCCCCCCcccccceEEEEEEECCCCCCc-eeeEEEecCcccccC
Q 022155 252 QMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADT-SCEFEITREGVFGVE 301 (302)
Q Consensus 252 ~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~-~~~F~I~~~Gi~~~~ 301 (302)
....|.++++|+|..|+. ++.|.|+.+|+.+.+
T Consensus 235 -----------------~g~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~ 268 (279)
T COG0468 235 -----------------VGNKRRVKVVKNKVAPPFKEAEFDITYGGGIDRE 268 (279)
T ss_pred -----------------cCCeEEEEEEeCCCCCCCceeEEEeecCcccccc
Confidence 147999999999999765 999999999998764
No 13
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=100.00 E-value=3.5e-38 Score=271.66 Aligned_cols=226 Identities=38% Similarity=0.520 Sum_probs=186.1
Q ss_pred cccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCC
Q 022155 20 CTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPS 99 (302)
Q Consensus 20 i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~ 99 (302)
++||++.||++|+||+++|++++|+|+||+|||+||++++.+++.+...+|...+|+||++|..++++|+.++...+...
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~ 80 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD 80 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999999999999999999999999986443334444589999999999999999988775432
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHH
Q 022155 100 NDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKA 179 (302)
Q Consensus 100 ~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~ 179 (302)
.+..++++++..+.+.+++...+..+.+.+.+ .++++|||||++++++.++.+.. ....|.+.+.+++..|++
T Consensus 81 -~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~lvVIDsis~l~~~~~~~~~-~~~~~~~~l~~~~~~L~~ 153 (226)
T cd01393 81 -PEEVLDNIYVARPYNGEQQLEIVEELERIMSS-----GRVDLVVVDSVAALFRKEFIGRG-MLAERARLLSQALRKLLR 153 (226)
T ss_pred -hhhhhccEEEEeCCCHHHHHHHHHHHHHHhhc-----CCeeEEEEcCcchhhhhhhcCCc-hHHHHHHHHHHHHHHHHH
Confidence 33567899999999998888888877665443 67899999999999886654331 245677778999999999
Q ss_pred HHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccccccCCCC
Q 022155 180 MAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGVG 259 (302)
Q Consensus 180 la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~ 259 (302)
++++++++||++||+.+.....+ +...+|++|..|+|++++||+|++.+. . +
T Consensus 154 ~a~~~~~~vi~tnq~~~~~~~~~----------------~~~~~p~~G~~~~~~~~~ri~l~~~~~----~-----~--- 205 (226)
T cd01393 154 LADKFNVAVVFTNQVRAKVDVMF----------------GDPETPAGGNALAHASTTRLDLRKGRG----I-----I--- 205 (226)
T ss_pred HHHHhCcEEEEEEEEeeeccccc----------------CCCccccCchhhhCcccEEEEEEecCC----c-----c---
Confidence 99999999999999988765321 134679999999999999999999765 1 1
Q ss_pred CCCCCCcccccceEEEEEEECCCCCCceeeE
Q 022155 260 GSGSEDFVCRRTRRSLHVVFAPHLADTSCEF 290 (302)
Q Consensus 260 ~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F 290 (302)
...|.++++|+|+.|..++.|
T Consensus 206 ----------~~~r~~~~~k~~~~~~~~~~~ 226 (226)
T cd01393 206 ----------GERRIAKVVKSPALPEAEAEF 226 (226)
T ss_pred ----------CcEEEEEEEeCCCCCCccccC
Confidence 368999999999889887765
No 14
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=100.00 E-value=2.4e-36 Score=260.07 Aligned_cols=221 Identities=27% Similarity=0.393 Sum_probs=180.5
Q ss_pred CccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhC
Q 022155 18 EKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFR 97 (302)
Q Consensus 18 ~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~ 97 (302)
++++||++.||++|+||+++|.+++|+|+||+|||+||++++.+++ ..|+ +|+|||+| .++++|+.++...
T Consensus 3 ~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~---~v~yi~~e-~~~~~r~~~~~~~-- 73 (225)
T PRK09361 3 ERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA---KNGK---KVIYIDTE-GLSPERFKQIAGE-- 73 (225)
T ss_pred ccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCC---eEEEEECC-CCCHHHHHHHHhh--
Confidence 5799999999999999999999999999999999999999999886 3455 89999999 8889999888764
Q ss_pred CCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHH
Q 022155 98 PSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGML 177 (302)
Q Consensus 98 ~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L 177 (302)
..+..++++++..+.+..++.+.+..+..++. .++++|||||++++++.++.+.. +...+.+.+.+++..|
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~lvVIDsi~al~~~~~~~~~-~~~~~~~~l~~~l~~L 144 (225)
T PRK09361 74 --DFEELLSNIIIFEPSSFEEQSEAIRKAEKLAK------ENVGLIVLDSATSLYRLELEDEE-DNSKLNRELGRQLTHL 144 (225)
T ss_pred --ChHhHhhCeEEEeCCCHHHHHHHHHHHHHHHH------hcccEEEEeCcHHHhHHHhcCCc-cHHHHHHHHHHHHHHH
Confidence 22345678889888888887777777766653 25799999999999876543322 2244555678888899
Q ss_pred HHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccccccCC
Q 022155 178 KAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGG 257 (302)
Q Consensus 178 ~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~ 257 (302)
++++++++++||+|||+...... ....|++|..|+|.++.++.|++ ..
T Consensus 145 ~~~a~~~~v~vi~tnq~~~~~~~-------------------~~~~~~gg~~~~~~~d~ii~l~~-~~------------ 192 (225)
T PRK09361 145 LKLARKHDLAVVITNQVYSDIDS-------------------DGLRPLGGHTLEHWSKTILRLEK-FR------------ 192 (225)
T ss_pred HHHHHHhCCEEEEEccceecCCC-------------------CcccCCCcchhhhhccEEEEEEE-cc------------
Confidence 99999999999999999865432 13568899999999999999988 22
Q ss_pred CCCCCCCCcccccceEEEEEEECCCCC-CceeeEEEecCccccc
Q 022155 258 VGGSGSEDFVCRRTRRSLHVVFAPHLA-DTSCEFEITREGVFGV 300 (302)
Q Consensus 258 ~~~~~~~~~~~~~~~R~~~v~ks~~~~-~~~~~F~I~~~Gi~~~ 300 (302)
...|++.+.|+|..+ ...++|+|+++||++.
T Consensus 193 ------------~~~r~~~i~k~~~~~~~~~~~f~It~~Gi~~~ 224 (225)
T PRK09361 193 ------------NGKRRATLEKHRSRPEGESAEFRITDRGIEII 224 (225)
T ss_pred ------------CCeEEEEEEECCCCCCCCeEEEEEeCCcEecC
Confidence 246888899999775 4789999999999875
No 15
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=100.00 E-value=9.8e-35 Score=248.91 Aligned_cols=217 Identities=24% Similarity=0.307 Sum_probs=170.0
Q ss_pred cccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCC
Q 022155 20 CTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPS 99 (302)
Q Consensus 20 i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~ 99 (302)
++||++.||.+|+|||++|.+++|+|+||+|||+||++++.+.+ ..|+ +|+||++|..++ +|++++....
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~---~v~yi~~e~~~~-~~~~~~~~~~--- 70 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA---GQGK---KVAYIDTEGLSS-ERFRQIAGDR--- 70 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCC---eEEEEECCCCCH-HHHHHHHhHC---
Confidence 68999999999999999999999999999999999999999875 4565 899999998776 7887776542
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHH
Q 022155 100 NDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKA 179 (302)
Q Consensus 100 ~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~ 179 (302)
.+....++.+..+.+..++...+..+...+.. ++++|||||++++++.+...... ...+...+.+++..|+.
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~lvvIDsi~~l~~~~~~~~~~-~~~~~~~l~~~~~~L~~ 142 (218)
T cd01394 71 -PERAASSIIVFEPMDFNEQGRAIQETETFADE------KVDLVVVDSATALYRLELGDDDT-TIKNYRELAKQLTFLLW 142 (218)
T ss_pred -hHhhhcCEEEEeCCCHHHHHHHHHHHHHHHhc------CCcEEEEechHHhhhHHhcCccc-hHHHHHHHHHHHHHHHH
Confidence 12245688888888777777667777666543 47999999999998765443211 12344456788889999
Q ss_pred HHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccccccCCCC
Q 022155 180 MAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGVG 259 (302)
Q Consensus 180 la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~ 259 (302)
+|++++++||+|||+.+.... ....|.+|..|+|+++++|.|++.+.
T Consensus 143 ~a~~~~~~vi~t~q~~~~~~~-------------------~~~~p~~g~~~~~~~d~~i~l~~~~~-------------- 189 (218)
T cd01394 143 LARKHDVAVVITNQVYSDVGS-------------------GSVRPLGGHTLEHWSKVILRLEKLRV-------------- 189 (218)
T ss_pred HHHHhCCEEEEecCCEEcCCC-------------------CcccccCCcchhcceeEEEEEEEcCC--------------
Confidence 999999999999999765431 24678999999999999999998653
Q ss_pred CCCCCCcccccceEEEEEEECCCCC-CceeeEEEecCccc
Q 022155 260 GSGSEDFVCRRTRRSLHVVFAPHLA-DTSCEFEITREGVF 298 (302)
Q Consensus 260 ~~~~~~~~~~~~~R~~~v~ks~~~~-~~~~~F~I~~~Gi~ 298 (302)
..|++.+.|++..+ ...+.|+|+++||+
T Consensus 190 -----------~~r~~~~~~~~~~~~~~~~~f~It~~Gi~ 218 (218)
T cd01394 190 -----------GTRRAVLEKHRFRPEGSSVYFRITDKGIE 218 (218)
T ss_pred -----------CeEEEEEeeCCCCCCCceEEEEEeCCccC
Confidence 24555566777665 45699999999985
No 16
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=100.00 E-value=7.3e-34 Score=241.92 Aligned_cols=208 Identities=27% Similarity=0.363 Sum_probs=170.3
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCC
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCD 106 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~ 106 (302)
||.+|+||+|+|.+++|+||||+|||+||++++.+.+ ..|+ +|+|||+|. ++++|+.+++..+ .+..++
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~---~v~yi~~e~-~~~~rl~~~~~~~----~~~~~~ 69 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAA---RQGK---KVVYIDTEG-LSPERFKQIAEDR----PERALS 69 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hCCC---eEEEEECCC-CCHHHHHHHHHhC----hHHHhc
Confidence 7999999999999999999999999999999999875 4455 899999997 8999999988754 223568
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCc
Q 022155 107 YIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGL 186 (302)
Q Consensus 107 ~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~ 186 (302)
++.+.++.+..++.+.+..+.+.+.+ .++++|||||++++++.+..+.. ..|.+.+.+++..|+++++++++
T Consensus 70 ~i~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~lvVIDSis~l~~~~~~~~~---~~~~~~l~~~~~~L~~~~~~~~v 141 (209)
T TIGR02237 70 NFIVFEVFDFDEQGVAIQKTSKFIDR-----DSASLVVVDSFTALYRLELSDDR---ISRNRELARQLTLLLSLARKKNL 141 (209)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhh-----cCccEEEEeCcHHHhHHHhCCcc---HHHHHHHHHHHHHHHHHHHHcCC
Confidence 89999998888887778887777764 46799999999999876544322 23455567788889999999999
Q ss_pred EEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCc
Q 022155 187 AVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDF 266 (302)
Q Consensus 187 ~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~ 266 (302)
++|+|||+...... ....|++|..|+|.+++++.|++. .
T Consensus 142 ~vl~t~~~~~~~~~-------------------~~~~~~gg~~~~~~~d~vi~l~~~-~--------------------- 180 (209)
T TIGR02237 142 AVVITNQVYTDVNN-------------------GTLRPLGGHLLEHWSKVILRLEKF-R--------------------- 180 (209)
T ss_pred EEEEEcccEEecCC-------------------CCCcCCCcchhheeeeEEEEEEec-C---------------------
Confidence 99999998765432 245789999999999999999875 2
Q ss_pred ccccceEEEEEEECCCCCC-ceeeEEEecCccc
Q 022155 267 VCRRTRRSLHVVFAPHLAD-TSCEFEITREGVF 298 (302)
Q Consensus 267 ~~~~~~R~~~v~ks~~~~~-~~~~F~I~~~Gi~ 298 (302)
..|++.+.|+|..+. ..+.|+|+++||+
T Consensus 181 ----~~r~~~i~k~~~~~~~~~~~f~It~~Gi~ 209 (209)
T TIGR02237 181 ----GRRLATLEKHRSRPEGESVYFRITDDGIE 209 (209)
T ss_pred ----CEEEEEEEECCCCCCCCeEEEEEeCCccC
Confidence 157778889888764 6799999999985
No 17
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=100.00 E-value=5.2e-34 Score=253.72 Aligned_cols=231 Identities=26% Similarity=0.327 Sum_probs=182.8
Q ss_pred CCCCCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHH
Q 022155 14 PLTTEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQL 92 (302)
Q Consensus 14 ~~~~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i 92 (302)
.....++|||++.||.+|+ ||+|+|.+++|+|||||||||||++++.+++ ..|+ .|+|||+|+.+++++++++
T Consensus 30 ~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~---~~vyId~E~~~~~~~a~~l 103 (325)
T cd00983 30 VQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQ---KLGG---TVAFIDAEHALDPVYAKKL 103 (325)
T ss_pred ccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC---CEEEECccccHHHHHHHHc
Confidence 3457899999999999999 9999999999999999999999999999986 5566 8999999999988776665
Q ss_pred HHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh-hccCCChhh--HHHHHHH
Q 022155 93 SHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR-SDFDNTMDD--LKKRSFL 169 (302)
Q Consensus 93 ~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~-~~~~~~~~~--~~~r~~~ 169 (302)
. ..++++++..+.+.+++.+++. .++.+ ..+++|||||++++++ .++.+..++ ...+.+.
T Consensus 104 G---------vd~~~l~v~~p~~~eq~l~i~~---~li~s-----~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~ 166 (325)
T cd00983 104 G---------VDLDNLLISQPDTGEQALEIAD---SLVRS-----GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARL 166 (325)
T ss_pred C---------CCHHHheecCCCCHHHHHHHHH---HHHhc-----cCCCEEEEcchHhhcccccccccccccchHHHHHH
Confidence 4 2357888888888777665554 44443 5789999999999985 565544322 1234455
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhc
Q 022155 170 FFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVR 249 (302)
Q Consensus 170 l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~ 249 (302)
+.+.++.|..+++++++++|+|||+++.+...+ +....|.+|..|.|..+.|+.+.|....+
T Consensus 167 l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~----------------g~~e~~~GG~~L~~~ss~rl~lrk~~~~k-- 228 (325)
T cd00983 167 MSQALRKLTGSINKSNTTVIFINQLREKIGVMF----------------GNPETTTGGNALKFYSSVRLDIRRIETIK-- 228 (325)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEcccccccccc----------------CCCccCCCchHHhhhcceEEEEEeecccc--
Confidence 778889999999999999999999998876432 13567899999999999999999976533
Q ss_pred ccccccCCCCCCCCCCcccccceEEEEEEECCCCC-CceeeEEEe-cCcccc
Q 022155 250 ENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA-DTSCEFEIT-REGVFG 299 (302)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~-~~~~~F~I~-~~Gi~~ 299 (302)
++.++.| .+++++|+|++..| ...++|.|. ..||.-
T Consensus 229 ~~~~~~G--------------~~~~~~v~Knk~~~p~~~~~~~i~~~~Gi~~ 266 (325)
T cd00983 229 DGDEVIG--------------NRTKVKVVKNKVAPPFKTAEFDILFGEGISR 266 (325)
T ss_pred cCCcccc--------------cEEEEEEEecccCCCCCceEEEEEcCcccch
Confidence 2222333 57899999999884 678999998 468753
No 18
>PRK09354 recA recombinase A; Provisional
Probab=100.00 E-value=1.2e-33 Score=253.13 Aligned_cols=229 Identities=25% Similarity=0.346 Sum_probs=181.6
Q ss_pred CCCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSH 94 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~ 94 (302)
...++|||++.||.+|+ ||+|+|.+++|+||+||||||||++++.+++ ..|+ .|+|||+|+++++++++++.
T Consensus 37 ~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~---~~G~---~~~yId~E~s~~~~~a~~lG- 109 (349)
T PRK09354 37 DVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ---KAGG---TAAFIDAEHALDPVYAKKLG- 109 (349)
T ss_pred CCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC---cEEEECCccchHHHHHHHcC-
Confidence 57899999999999999 9999999999999999999999999999987 5566 99999999999887666554
Q ss_pred HhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh-hccCCChhh--HHHHHHHHH
Q 022155 95 TFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR-SDFDNTMDD--LKKRSFLFF 171 (302)
Q Consensus 95 ~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~-~~~~~~~~~--~~~r~~~l~ 171 (302)
..++++++..+.+.++..+++. .++.+ ..+++|||||++++++ .++.+..++ ...+.+++.
T Consensus 110 --------vdld~lli~qp~~~Eq~l~i~~---~li~s-----~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms 173 (349)
T PRK09354 110 --------VDIDNLLVSQPDTGEQALEIAD---TLVRS-----GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMS 173 (349)
T ss_pred --------CCHHHeEEecCCCHHHHHHHHH---HHhhc-----CCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHH
Confidence 2357888888888777655544 44543 5789999999999984 566654322 123334667
Q ss_pred HHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhccc
Q 022155 172 KISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVREN 251 (302)
Q Consensus 172 ~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~ 251 (302)
+.++.|..+++++++++|+|||+++++...+ +.+..|.+|.+|.|.+..|+.|.|....+ +.
T Consensus 174 ~~Lr~L~~~l~k~~itvI~tNQvr~~ig~~~----------------g~pe~~~GG~aL~~~ss~rl~lrr~~~iK--~~ 235 (349)
T PRK09354 174 QALRKLTGNISKSNTTVIFINQIREKIGVMF----------------GNPETTTGGNALKFYASVRLDIRRIGTIK--DG 235 (349)
T ss_pred HHHHHHHHHHHHcCcEEEEEEeeeecccccc----------------CCCCcCCCchhhHhhheeeeEEecccccc--cC
Confidence 7889999999999999999999998775322 12456889999999999999999976533 23
Q ss_pred ccccCCCCCCCCCCcccccceEEEEEEECCCC-CCceeeEEEe-cCcccc
Q 022155 252 QMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHL-ADTSCEFEIT-REGVFG 299 (302)
Q Consensus 252 ~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~-~~~~~~F~I~-~~Gi~~ 299 (302)
.+..| .+++++++|+... |...++|.|. ..||.-
T Consensus 236 ~~~~G--------------~~~r~~vvKnk~~~p~~~a~~~i~~~~Gi~~ 271 (349)
T PRK09354 236 DEVIG--------------NRTKVKVVKNKVAPPFKQAEFDIMYGEGISR 271 (349)
T ss_pred Cceec--------------ceEEEEEEecccCCCCCceEEEEEcCCccch
Confidence 33333 5679999999988 5678999999 788864
No 19
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=100.00 E-value=5.9e-33 Score=246.85 Aligned_cols=230 Identities=25% Similarity=0.351 Sum_probs=180.2
Q ss_pred CCCCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHH
Q 022155 15 LTTEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLS 93 (302)
Q Consensus 15 ~~~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~ 93 (302)
...+++|||++.||.+|+ ||+|+|.+++|+|||||||||||++++.+++ ..|+ .|+|||+|+.+++.+++++.
T Consensus 31 ~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~---~v~yId~E~~~~~~~a~~lG 104 (321)
T TIGR02012 31 MDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ---KAGG---TAAFIDAEHALDPVYARKLG 104 (321)
T ss_pred ccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC---cEEEEcccchhHHHHHHHcC
Confidence 357799999999999999 9999999999999999999999999999986 4566 89999999988876655543
Q ss_pred HHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh-hccCCChhh--HHHHHHHH
Q 022155 94 HTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR-SDFDNTMDD--LKKRSFLF 170 (302)
Q Consensus 94 ~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~-~~~~~~~~~--~~~r~~~l 170 (302)
..++++.+..+.+.++..+.+ ..++.+ ..+++|||||++++++ .++++..++ ...+.+++
T Consensus 105 ---------vd~~~l~v~~p~~~eq~l~~~---~~li~~-----~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m 167 (321)
T TIGR02012 105 ---------VDIDNLLVSQPDTGEQALEIA---ETLVRS-----GAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLM 167 (321)
T ss_pred ---------CCHHHeEEecCCCHHHHHHHH---HHHhhc-----cCCcEEEEcchhhhccchhhcccccccchhHHHHHH
Confidence 235688888888877765444 344543 5679999999999984 455543222 12333456
Q ss_pred HHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcc
Q 022155 171 FKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRE 250 (302)
Q Consensus 171 ~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~ 250 (302)
.++++.|..+++++++++|+|||+++.+...+ +....|.+|.++.|.+..|+.+.|....+ +
T Consensus 168 ~~~lr~L~~~l~~~~~tvi~tNQvr~~~g~~~----------------~~~e~~~GG~aL~~~ss~r~~lrr~~~iK--~ 229 (321)
T TIGR02012 168 SQALRKLTGALSKSNTTAIFINQIREKIGVMF----------------GNPETTTGGRALKFYASVRLDIRRIGQVK--Q 229 (321)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecceeccCccc----------------CCCccCcCccHHHHHHhHhHhhhhhhccc--c
Confidence 78889999999999999999999998765432 13456889999999999999999876533 3
Q ss_pred cccccCCCCCCCCCCcccccceEEEEEEECCCC-CCceeeEEEe-cCcccc
Q 022155 251 NQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHL-ADTSCEFEIT-REGVFG 299 (302)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~-~~~~~~F~I~-~~Gi~~ 299 (302)
+.+..| ..++++|+|++.. |.+.++|.|. ..||.-
T Consensus 230 ~~~~~g--------------~~~~~~v~Knk~~~p~~~~~~~i~~~~Gi~~ 266 (321)
T TIGR02012 230 GEEVVG--------------NRTKVKVVKNKVAPPFKEAEFDILYGEGISK 266 (321)
T ss_pred CCceec--------------cEEEEEEEECCCCCCCCceEEEEEcCCccch
Confidence 333344 6789999999988 5678999999 788864
No 20
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=100.00 E-value=2.6e-31 Score=258.06 Aligned_cols=227 Identities=23% Similarity=0.333 Sum_probs=181.4
Q ss_pred CCCCCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHH
Q 022155 14 PLTTEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQL 92 (302)
Q Consensus 14 ~~~~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i 92 (302)
+....+++||++.||.+|+ ||+++|.+++|+||+|+||||||++++.+++ ..|+ +|+|||+|+++++++++++
T Consensus 35 ~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~---~v~yId~E~t~~~~~A~~l 108 (790)
T PRK09519 35 RQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ---AAGG---VAAFIDAEHALDPDYAKKL 108 (790)
T ss_pred ccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC---cEEEECCccchhHHHHHHc
Confidence 4457899999999999998 8999999999999999999999999999886 5666 8999999999998777666
Q ss_pred HHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh-hhccCCChh--hHHHHHHH
Q 022155 93 SHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF-RSDFDNTMD--DLKKRSFL 169 (302)
Q Consensus 93 ~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~-~~~~~~~~~--~~~~r~~~ 169 (302)
.. .++++++.++.+.+++... +..++.+ ..+++|||||+++++ +.++++.++ .+..++++
T Consensus 109 Gv---------Dl~~llv~~~~~~E~~l~~---i~~lv~~-----~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl 171 (790)
T PRK09519 109 GV---------DTDSLLVSQPDTGEQALEI---ADMLIRS-----GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARL 171 (790)
T ss_pred CC---------ChhHeEEecCCCHHHHHHH---HHHHhhc-----CCCeEEEEcchhhhcchhhccCCCCcccHHHHHHH
Confidence 52 2467778888887775544 3445543 578999999999999 577765532 23344556
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhc
Q 022155 170 FFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVR 249 (302)
Q Consensus 170 l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~ 249 (302)
+.+++..|.++++++|+++|+|||+...+... | +.+.+|.+|+.|.|..++||.|.|....+
T Consensus 172 ~~q~L~~L~~~l~~~nvtvi~TNQv~~~~g~~--------------f--g~p~~~~GG~~l~h~ss~Ri~lrk~~~ik-- 233 (790)
T PRK09519 172 MSQALRKMTGALNNSGTTAIFINQLRDKIGVM--------------F--GSPETTTGGKALKFYASVRMDVRRVETLK-- 233 (790)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecceecCCCc--------------C--CCCCcCCCCcccceeccEEEEeeeccccc--
Confidence 67888999999999999999999999877642 2 24578999999999999999999865432
Q ss_pred ccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecC
Q 022155 250 ENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITRE 295 (302)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~ 295 (302)
++.... ...|.++|+||+++|..++.|.|+..
T Consensus 234 ~~~~~~--------------G~~~~~kv~ks~cLpe~e~v~~i~tG 265 (790)
T PRK09519 234 DGTNAV--------------GNRTRVKVVKNKCLAEGTRIFDPVTG 265 (790)
T ss_pred cCcccc--------------ceEEEEEEEECCCCCCceEEEEecCC
Confidence 111111 47999999999999999999999843
No 21
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.97 E-value=2.3e-30 Score=229.56 Aligned_cols=230 Identities=25% Similarity=0.339 Sum_probs=173.0
Q ss_pred CCCCCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHH
Q 022155 14 PLTTEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQL 92 (302)
Q Consensus 14 ~~~~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i 92 (302)
....+.+|||++.||.+|+ ||+|+|.++||+||+++|||+|+++++++++ ..|+ .|+|||.|..+++.+++++
T Consensus 28 ~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q---~~g~---~~a~ID~e~~ld~~~a~~l 101 (322)
T PF00154_consen 28 SQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ---KQGG---ICAFIDAEHALDPEYAESL 101 (322)
T ss_dssp GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH---HTT----EEEEEESSS---HHHHHHT
T ss_pred ccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhh---cccc---eeEEecCcccchhhHHHhc
Confidence 3457889999999999999 9999999999999999999999999999986 5566 8999999999999999888
Q ss_pred HHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh-hccCCChh--hHHHHHHH
Q 022155 93 SHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR-SDFDNTMD--DLKKRSFL 169 (302)
Q Consensus 93 ~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~-~~~~~~~~--~~~~r~~~ 169 (302)
+. .++++++.++.+.++.+++++ .++.. ..+++|||||++++.. .++++..+ .+..+.++
T Consensus 102 Gv---------dl~rllv~~P~~~E~al~~~e---~lirs-----g~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ 164 (322)
T PF00154_consen 102 GV---------DLDRLLVVQPDTGEQALWIAE---QLIRS-----GAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARL 164 (322)
T ss_dssp T-----------GGGEEEEE-SSHHHHHHHHH---HHHHT-----TSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHH
T ss_pred Cc---------cccceEEecCCcHHHHHHHHH---HHhhc-----ccccEEEEecCcccCCHHHHhhccccccCcchHHH
Confidence 73 467999999988877665554 44543 6779999999999864 45554332 23456778
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhc
Q 022155 170 FFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVR 249 (302)
Q Consensus 170 l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~ 249 (302)
|.++++.|..+..+.|+++|++||+++++...++ .+.+..+|.+|.|+.+.||.+.|....+
T Consensus 165 ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig~~~g----------------~~~~t~GG~alkfyas~rl~i~k~~~ik-- 226 (322)
T PF00154_consen 165 MSQALRKLTPLLSKSNTTLIFINQVRDKIGVMFG----------------NPETTPGGRALKFYASVRLEIRKKEQIK-- 226 (322)
T ss_dssp HHHHHHHHHHHHHTTT-EEEEEEEESSSSSSSSS----------------SSSCCTSHHHHHHHCSEEEEEEEEEEEE--
T ss_pred HHHHHHHHHHHHHhhceEEEEeehHHHHHhhccC----------------CCcCCCCCchhhhhhhhHHhhhcccccc--
Confidence 9999999999999999999999999998875432 2344569999999999999999875533
Q ss_pred ccccccCCCCCCCCCCcccccceEEEEEEECCCC-CCceeeEEEe-cCccc
Q 022155 250 ENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHL-ADTSCEFEIT-REGVF 298 (302)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~-~~~~~~F~I~-~~Gi~ 298 (302)
++.++.| ..-.++|+|+... |.+.++|.|. ..||.
T Consensus 227 ~~~~~iG--------------~~~~vkv~KnKva~P~k~a~~~i~y~~Gid 263 (322)
T PF00154_consen 227 EGDEVIG--------------NKIKVKVVKNKVAPPFKKAEFDIYYGRGID 263 (322)
T ss_dssp ETTCECE--------------EEEEEEEEEESSS-TTEEEEEEEETTTEE-
T ss_pred cCCcccc--------------cEEEEEEEEcccCCCcceeEEEEecCCeEC
Confidence 2223334 6779999999988 6778999998 56763
No 22
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.96 E-value=5.5e-28 Score=211.80 Aligned_cols=228 Identities=18% Similarity=0.229 Sum_probs=158.9
Q ss_pred ccccCChhhHhhh--------------CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCC
Q 022155 19 KCTVGCPIIDRCL--------------GGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPF 84 (302)
Q Consensus 19 ~i~tG~~~LD~~L--------------~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~ 84 (302)
.++||+++||.+| +||+|+|.+++|+|+||+|||+||+|++.+.+ ..|+ +|+||++|.+.
T Consensus 3 ~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge---~vlyis~Ee~~ 76 (259)
T TIGR03878 3 GVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQA---SRGN---PVLFVTVESPA 76 (259)
T ss_pred CccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCC---cEEEEEecCCc
Confidence 5799999999999 59999999999999999999999999999875 4566 99999999643
Q ss_pred C--HHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHH----HHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCC
Q 022155 85 P--MRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVD----QLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDN 158 (302)
Q Consensus 85 ~--~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~----~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~ 158 (302)
. .+++.+.+..+.. ..+...+++++....+.. ++.+++..+...+++ .++++|||||+++++...
T Consensus 77 ~~~~~~l~~~a~~~g~-d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~-----~~~~~vVIDSls~l~~~~--- 147 (259)
T TIGR03878 77 NFVYTSLKERAKAMGV-DFDKIEENIILIDAASSTELRENVPNLLATLAYAIKE-----YKVKNTVIDSITGLYEAK--- 147 (259)
T ss_pred hHHHHHHHHHHHHcCC-CHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHh-----hCCCEEEEcCchHhcccc---
Confidence 2 2345444444431 112234677777655432 344555666666654 567999999999976421
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEE
Q 022155 159 TMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRL 238 (302)
Q Consensus 159 ~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl 238 (302)
+.. .++++..|..+++++++|+++|+|....... ....|+.+..++|.+|..|
T Consensus 148 ---~~~-----~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~-------------------~~~~~~~~~~~~~l~D~vI 200 (259)
T TIGR03878 148 ---EMM-----AREIVRQLFNFMKKWYQTALFVSQKRSGHEE-------------------LSAEAAGGYAVSHIVDGTI 200 (259)
T ss_pred ---hHH-----HHHHHHHHHHHHHHcCCeEEEEeccccCccc-------------------ccccccCCcceeEeeccEE
Confidence 111 2355666777778899999999997653211 0114566667899999999
Q ss_pred EEEEecCc-hhcccc--cccCCCCCCCCCCcccccceEEEEEEECCCC--CCceeeEEEecCcccccC
Q 022155 239 FLSRNEDF-VVRENQ--MVNGGVGGSGSEDFVCRRTRRSLHVVFAPHL--ADTSCEFEITREGVFGVE 301 (302)
Q Consensus 239 ~l~~~~~~-~~~~~~--~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~--~~~~~~F~I~~~Gi~~~~ 301 (302)
+|...... ....+. +..| ...|.++|+|.++. ....++|.|+++||..+.
T Consensus 201 ~L~~~~~~~~~~~~~~~~~~~-------------~~~R~l~I~KmRg~~h~~~~~~~~It~~Gi~~i~ 255 (259)
T TIGR03878 201 VLAKQLIMSRFDASLYKKPIG-------------EIVRLFRIDGCRMCGHDTKTHVLEIDETGLVKIG 255 (259)
T ss_pred EEeeeeccchhhhhhcccccc-------------ceEEEEEEEEccCCCCCCceeEEEEcCCceEEec
Confidence 99865320 000000 0001 47899999999887 456799999999987763
No 23
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.96 E-value=1.1e-27 Score=218.54 Aligned_cols=209 Identities=20% Similarity=0.312 Sum_probs=156.2
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHT 95 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~ 95 (302)
..++++||++.||++|+||+++|++++|.|+||+|||+|+++++.+.+ ..++ +|+||++|++. +.+..-+..
T Consensus 60 ~~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a---~~g~---~VlYvs~EEs~--~qi~~Ra~r 131 (372)
T cd01121 60 EEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRGG---KVLYVSGEESP--EQIKLRADR 131 (372)
T ss_pred ccCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCC---eEEEEECCcCH--HHHHHHHHH
Confidence 467999999999999999999999999999999999999999998875 4454 89999998754 333322333
Q ss_pred hCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHH
Q 022155 96 FRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISG 175 (302)
Q Consensus 96 ~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~ 175 (302)
+. ...+++++....+.+++.+. +.. .++++|||||++.++..+.+..++...+ +++++.
T Consensus 132 lg-----~~~~~l~l~~e~~le~I~~~-------i~~-----~~~~lVVIDSIq~l~~~~~~~~~g~~~q----vr~~~~ 190 (372)
T cd01121 132 LG-----ISTENLYLLAETNLEDILAS-------IEE-----LKPDLVIIDSIQTVYSSELTSAPGSVSQ----VRECTA 190 (372)
T ss_pred cC-----CCcccEEEEccCcHHHHHHH-------HHh-----cCCcEEEEcchHHhhccccccCCCCHHH----HHHHHH
Confidence 32 12356666655554443332 222 3569999999999987655433323222 567788
Q ss_pred HHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhccccccc
Q 022155 176 MLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVN 255 (302)
Q Consensus 176 ~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~ 255 (302)
.|.++++++++++|+++|++.... .+++..+.|.+|+.|+|++...
T Consensus 191 ~L~~lak~~~itvilvghvtk~g~------------------------~aG~~~leh~vD~Vi~le~~~~---------- 236 (372)
T cd01121 191 ELMRFAKERNIPIFIVGHVTKEGS------------------------IAGPKVLEHMVDTVLYFEGDRH---------- 236 (372)
T ss_pred HHHHHHHHcCCeEEEEeeccCCCc------------------------ccCcccchhhceEEEEEEcCCC----------
Confidence 899999999999999999975311 1234578899999999877543
Q ss_pred CCCCCCCCCCcccccceEEEEEEECCCCCC-ceeeEEEecCcccccC
Q 022155 256 GGVGGSGSEDFVCRRTRRSLHVVFAPHLAD-TSCEFEITREGVFGVE 301 (302)
Q Consensus 256 g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~-~~~~F~I~~~Gi~~~~ 301 (302)
...|.++++|+++.+. ....|+|+++||+.+.
T Consensus 237 --------------~~~R~Lri~KnR~g~~~ei~~F~i~~~Gl~~v~ 269 (372)
T cd01121 237 --------------SEYRILRSVKNRFGSTNELGVFEMRENGLREVS 269 (372)
T ss_pred --------------CcEEEEEEEeCCCCCCCCEEEEEECCCCeEEcc
Confidence 3589999999998864 4589999999999653
No 24
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.96 E-value=2.1e-27 Score=222.40 Aligned_cols=209 Identities=22% Similarity=0.339 Sum_probs=154.7
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHT 95 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~ 95 (302)
...+++||++.||++|+||+++|++++|+|+||+|||||+++++.+.+ ..|+ +|+|+++|+++. .+..-+..
T Consensus 58 ~~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~---~vlYvs~Ees~~--qi~~ra~r 129 (446)
T PRK11823 58 EEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGG---KVLYVSGEESAS--QIKLRAER 129 (446)
T ss_pred cCCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCC---eEEEEEccccHH--HHHHHHHH
Confidence 467899999999999999999999999999999999999999999875 3455 899999997653 23222333
Q ss_pred hCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHH
Q 022155 96 FRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISG 175 (302)
Q Consensus 96 ~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~ 175 (302)
+.. ..+++++....+.+++.+. +++ .++++|||||++.++..++++..++..+ +++++.
T Consensus 130 lg~-----~~~~l~~~~e~~l~~i~~~-------i~~-----~~~~lVVIDSIq~l~~~~~~~~~g~~~q----vr~~~~ 188 (446)
T PRK11823 130 LGL-----PSDNLYLLAETNLEAILAT-------IEE-----EKPDLVVIDSIQTMYSPELESAPGSVSQ----VRECAA 188 (446)
T ss_pred cCC-----ChhcEEEeCCCCHHHHHHH-------HHh-----hCCCEEEEechhhhccccccCCCCCHHH----HHHHHH
Confidence 321 1345666655554443322 222 3569999999999987665433322222 457778
Q ss_pred HHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhccccccc
Q 022155 176 MLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVN 255 (302)
Q Consensus 176 ~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~ 255 (302)
.|.++++++++++++++|+..... .+++..|+|.+|++++|++...
T Consensus 189 ~L~~~ak~~~itvilv~hvtk~~~------------------------~ag~~~lehlvD~Vi~le~~~~---------- 234 (446)
T PRK11823 189 ELMRLAKQRGIAVFLVGHVTKEGA------------------------IAGPRVLEHMVDTVLYFEGDRH---------- 234 (446)
T ss_pred HHHHHHHHcCCEEEEEeeccCCCC------------------------cCCcchhhhhCeEEEEEEcCCC----------
Confidence 899999999999999999865211 1234579999999999875222
Q ss_pred CCCCCCCCCCcccccceEEEEEEECCCCCC-ceeeEEEecCcccccC
Q 022155 256 GGVGGSGSEDFVCRRTRRSLHVVFAPHLAD-TSCEFEITREGVFGVE 301 (302)
Q Consensus 256 g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~-~~~~F~I~~~Gi~~~~ 301 (302)
...|.++++|+|+.+. ....|+|+++||+.+.
T Consensus 235 --------------~~~R~l~i~K~R~g~~~e~~~f~it~~Gi~~v~ 267 (446)
T PRK11823 235 --------------SRYRILRAVKNRFGATNEIGVFEMTEQGLREVS 267 (446)
T ss_pred --------------CceEEEEEccCCCCCCCceEEEEEcCCCceECC
Confidence 3689999999998764 4578999999998553
No 25
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=99.95 E-value=2.3e-29 Score=222.30 Aligned_cols=238 Identities=31% Similarity=0.516 Sum_probs=192.5
Q ss_pred cCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHH
Q 022155 12 DNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQ 91 (302)
Q Consensus 12 ~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~ 91 (302)
+++.....++||+..||++|+||++.|.++||+||||+|||+||+.++..+ |+..++++|||++..|..+|+..
T Consensus 85 ~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~------~gge~~~l~IDs~s~~~~~~~~~ 158 (326)
T KOG1433|consen 85 QLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTC------GGGEGKVLYIDTESTFRLERLTE 158 (326)
T ss_pred HhhccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhc------cCCcceEEEEecchhcccchhhh
Confidence 677778899999999999999999999999999999999999998888765 34456999999999998888888
Q ss_pred HHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHH
Q 022155 92 LSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFF 171 (302)
Q Consensus 92 i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~ 171 (302)
+...+..... ...+++.+.+..+.++...........+.+ ....++++||.++.++.++.+ .++..+|...+.
T Consensus 159 ia~~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~-----~~~~l~~vds~ta~~~~~~~g-~~~~~a~~~~~~ 231 (326)
T KOG1433|consen 159 IAGRSGLRGR-DTLSNLMLARAYNLDHQLQLIQEAEIMINQ-----SRVKLLIVDSATALYRTTFKG-RGELSARQMLLA 231 (326)
T ss_pred hhhhhhhhhH-HHHHHHHHHHHHhhHHHHHHHHHHHHHhhc-----cceeEEEeccccccccccccc-ccchHHHHHHHH
Confidence 8776432211 133455555555555555555555545543 467999999999999888877 456778888899
Q ss_pred HHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhccc
Q 022155 172 KISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVREN 251 (302)
Q Consensus 172 ~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~ 251 (302)
..++.|++++++++++||++||++.+++.. .+|.. ...+|.+|..|+|.+++|+.+.+. +
T Consensus 232 ~~~~~l~~la~~~g~~vvitn~v~~~~d~~------------~~f~~-~~~~~~~~~~~~H~~~tr~~~~~~-~------ 291 (326)
T KOG1433|consen 232 KFLRSLKKLADEFGVAVVITNQVTAQVDGA------------IMFGS-DPKKPIGGNIWAHAVTTRLGLRKG-K------ 291 (326)
T ss_pred HHHHHHHHHHHhcCceEEEecccccccccc------------cccCc-ccccccccchHHHHHHHHHHHHhc-c------
Confidence 999999999999999999999999988753 13433 578899999999999999999882 2
Q ss_pred ccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCccccc
Q 022155 252 QMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGV 300 (302)
Q Consensus 252 ~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~ 300 (302)
..+|..++.++|..|+.+..|.|...|+.+-
T Consensus 292 ------------------g~~~~~k~~~s~~l~e~~~~~~i~~~g~~~~ 322 (326)
T KOG1433|consen 292 ------------------GERRICKIADSPCLPEAEAVFAITEDGISDQ 322 (326)
T ss_pred ------------------ccchhhhhhcCCCCCcchhHHHHHhhhhhhh
Confidence 2477888899999999999999999999874
No 26
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.95 E-value=5.6e-27 Score=219.57 Aligned_cols=207 Identities=23% Similarity=0.286 Sum_probs=152.9
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHh
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTF 96 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~ 96 (302)
..+++||++.||++|+||+++|++++|.|+||+|||||+++++.+.+ ..|+ +|+|+++|++.. .+..-+.++
T Consensus 73 ~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~---kvlYvs~EEs~~--qi~~ra~rl 144 (454)
T TIGR00416 73 VPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KNQM---KVLYVSGEESLQ--QIKMRAIRL 144 (454)
T ss_pred cCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCC---cEEEEECcCCHH--HHHHHHHHc
Confidence 67899999999999999999999999999999999999999999875 4455 899999997643 232222222
Q ss_pred CCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHH
Q 022155 97 RPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGM 176 (302)
Q Consensus 97 ~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~ 176 (302)
. ...+++++....+.+++. +.+.+ .++++||||||+.++..+..+.+++..+ +++++..
T Consensus 145 g-----~~~~~l~~~~e~~~~~I~-------~~i~~-----~~~~~vVIDSIq~l~~~~~~~~~g~~~q----~r~~~~~ 203 (454)
T TIGR00416 145 G-----LPEPNLYVLSETNWEQIC-------ANIEE-----ENPQACVIDSIQTLYSPDISSAPGSVSQ----VRECTAE 203 (454)
T ss_pred C-----CChHHeEEcCCCCHHHHH-------HHHHh-----cCCcEEEEecchhhcccccccCCCCHHH----HHHHHHH
Confidence 2 123567766555544333 23332 3569999999999887655433333332 3567788
Q ss_pred HHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccccccC
Q 022155 177 LKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNG 256 (302)
Q Consensus 177 L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~g 256 (302)
|.++++++++|+++++|+..... -+....+.|.+|+.|+|++...
T Consensus 204 L~~~ak~~giTvllt~hvtkeg~------------------------~aG~~~le~lvD~VI~Le~~~~----------- 248 (454)
T TIGR00416 204 LMRLAKTRGIAIFIVGHVTKEGS------------------------IAGPKVLEHMVDTVLYFEGDRD----------- 248 (454)
T ss_pred HHHHHHHhCCEEEEEeccccCCc------------------------cCCcccEeeeceEEEEEeccCC-----------
Confidence 99999999999999999875311 1223467899999999987432
Q ss_pred CCCCCCCCCcccccceEEEEEEECCCCCC-ceeeEEEecCccccc
Q 022155 257 GVGGSGSEDFVCRRTRRSLHVVFAPHLAD-TSCEFEITREGVFGV 300 (302)
Q Consensus 257 ~~~~~~~~~~~~~~~~R~~~v~ks~~~~~-~~~~F~I~~~Gi~~~ 300 (302)
...|.++++|.++.+. ....|+|+++||+.+
T Consensus 249 -------------~~~R~L~v~K~R~g~~~e~~~f~it~~Gl~~v 280 (454)
T TIGR00416 249 -------------SRFRILRSVKNRFGATNEIGIFEMTEQGLREV 280 (454)
T ss_pred -------------CcEEEEEEecCCCCCCCcEEEEEEecCCceec
Confidence 3689999999997764 458999999999754
No 27
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.95 E-value=7.6e-27 Score=202.33 Aligned_cols=213 Identities=22% Similarity=0.282 Sum_probs=146.8
Q ss_pred CccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhC
Q 022155 18 EKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFR 97 (302)
Q Consensus 18 ~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~ 97 (302)
++++||++.||++|+||+|+|.++.|+|+||+|||+|++|++.+.+ ..|. +|+||++|.+ ++.+.+-+..+.
T Consensus 1 ~ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge---~~lyvs~ee~--~~~i~~~~~~~g 72 (237)
T TIGR03877 1 KRVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGE---PGIYVALEEH--PVQVRRNMAQFG 72 (237)
T ss_pred CccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCC---cEEEEEeeCC--HHHHHHHHHHhC
Confidence 3689999999999999999999999999999999999999998864 4566 8999999964 333322222322
Q ss_pred CCCCC-CCCCcEEEEeCC----------------CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCCh
Q 022155 98 PSNDH-NPCDYIFVQSVH----------------SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTM 160 (302)
Q Consensus 98 ~~~~~-~~l~~i~~~~~~----------------~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~ 160 (302)
..... ..-.++.+..+. +..++.+++..+.+.+++ .+.++|||||++.++...
T Consensus 73 ~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~-----~~~~~vVIDSls~l~~~~----- 142 (237)
T TIGR03877 73 WDVRKYEEEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRD-----INAKRVVIDSVTTLYITK----- 142 (237)
T ss_pred CCHHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHH-----hCCCEEEEcChhHhhcCC-----
Confidence 11000 001123333221 223445566666666654 456999999999976421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEE
Q 022155 161 DDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFL 240 (302)
Q Consensus 161 ~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l 240 (302)
....| +++..|+.+++++|+|+++|+|+..... +..+....+.+|+.|.|
T Consensus 143 -~~~~r-----~~l~~l~~~lk~~~~t~llt~~~~~~~~------------------------~~~~~~~~~~~D~vI~L 192 (237)
T TIGR03877 143 -PAMAR-----SIVMQLKRVLSGLGCTSIFVSQVSVGER------------------------GFGGPGVEHAVDGIIRL 192 (237)
T ss_pred -hHHHH-----HHHHHHHHHHHhCCCEEEEEECcccccc------------------------cccccceEEEEeEEEEE
Confidence 11122 4567777778899999999999864211 11122346778999999
Q ss_pred EEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCC--CceeeEEEecCccccc
Q 022155 241 SRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA--DTSCEFEITREGVFGV 300 (302)
Q Consensus 241 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~--~~~~~F~I~~~Gi~~~ 300 (302)
...+. + | ..+|+++|.|.++.+ ...++|+|+++||+.+
T Consensus 193 ~~~~~-----~----~-------------~~~R~l~i~K~Rg~~~~~~~~~~~It~~Gi~v~ 232 (237)
T TIGR03877 193 DLDEI-----D----G-------------ELKRSLIVWKMRGTKHSMRRHPFEITDKGIIVY 232 (237)
T ss_pred EEEee-----C----C-------------ceEEEEEEEECCCCCCCCceEEEEEcCCCEEEE
Confidence 87655 1 1 468999999998875 4578999999999864
No 28
>PRK04328 hypothetical protein; Provisional
Probab=99.95 E-value=4.4e-26 Score=198.71 Aligned_cols=213 Identities=22% Similarity=0.272 Sum_probs=148.7
Q ss_pred CccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhC
Q 022155 18 EKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFR 97 (302)
Q Consensus 18 ~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~ 97 (302)
++++||++.||++|+||+|+|.++.|+|+||+|||+||++++.+.+ ..|. +|+||++|.+ ++.+.+.+..+.
T Consensus 3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge---~~lyis~ee~--~~~i~~~~~~~g 74 (249)
T PRK04328 3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGE---PGVYVALEEH--PVQVRRNMRQFG 74 (249)
T ss_pred ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCC---cEEEEEeeCC--HHHHHHHHHHcC
Confidence 4689999999999999999999999999999999999999998864 4566 8999999874 445555544443
Q ss_pred CCCCCC-CCCcEEEEeCC----------------CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCCh
Q 022155 98 PSNDHN-PCDYIFVQSVH----------------SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTM 160 (302)
Q Consensus 98 ~~~~~~-~l~~i~~~~~~----------------~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~ 160 (302)
-...+. .-.++.+.++. +..++.+++..+.+.+++ .++++|||||++.++..+
T Consensus 75 ~d~~~~~~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~-----~~~~~vVIDSlt~l~~~~----- 144 (249)
T PRK04328 75 WDVRKYEEEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKD-----IGAKRVVIDSVSTLYLTK----- 144 (249)
T ss_pred CCHHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHh-----hCCCEEEEeChhHhhcCC-----
Confidence 211000 01123333221 233455566666666654 466999999999986432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEE
Q 022155 161 DDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFL 240 (302)
Q Consensus 161 ~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l 240 (302)
.... ++++..|.++++++|+|+++|+|+..... +..+..-.+.+|..|.|
T Consensus 145 -~~~~-----r~~~~~l~~~lk~~g~t~llt~e~~~~~~------------------------~~~~~~~~~~~D~vI~L 194 (249)
T PRK04328 145 -PAMA-----RSIVMQLKRVLSGLGCTAIFVSQVSVGER------------------------GFGGPGVEHAVDGIIRL 194 (249)
T ss_pred -hHHH-----HHHHHHHHHHHHhCCCEEEEEECcccccc------------------------ccCCCCcEEEEEEEEEE
Confidence 1112 24556677777789999999999864210 11122234678999999
Q ss_pred EEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCC--CceeeEEEecCccccc
Q 022155 241 SRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA--DTSCEFEITREGVFGV 300 (302)
Q Consensus 241 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~--~~~~~F~I~~~Gi~~~ 300 (302)
+..+. . | ..+|.+.|.|.++.+ ...++|.|+++||+.+
T Consensus 195 ~~~~~----~-----~-------------~~~R~l~I~K~Rg~~~~~~~~~~~It~~Gi~v~ 234 (249)
T PRK04328 195 DLDEI----D-----G-------------ELKRSLIVWKMRGTKHSMRRHPFEITDKGIVVY 234 (249)
T ss_pred EEEec----C-----C-------------cEEEEEEEEEccCCCCCCceEEEEEcCCCEEEE
Confidence 87654 1 1 468999999998775 5578999999999864
No 29
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.9e-26 Score=205.66 Aligned_cols=216 Identities=21% Similarity=0.321 Sum_probs=172.2
Q ss_pred cccccCCCC-CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 8 QNLLDNPLT-TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 8 ~~l~~~~~~-~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
..+.+.+.. ..+++||+..||++|+||+-+|++++|.|.||.|||||++|++..++ ..+ +|+|+++|++...
T Consensus 62 ~~l~~i~~~~~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~----~vLYVsGEES~~Q 134 (456)
T COG1066 62 LKLSDIELEEEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG----KVLYVSGEESLQQ 134 (456)
T ss_pred eeeccceeeecccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC----cEEEEeCCcCHHH
Confidence 345444444 78999999999999999999999999999999999999999999985 333 8999999987554
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHH
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKR 166 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r 166 (302)
-+++ ++++. ...+++++....+.+++.+.+++ .+++++|||||+.+|..++++.++...|
T Consensus 135 iklR--A~RL~-----~~~~~l~l~aEt~~e~I~~~l~~------------~~p~lvVIDSIQT~~s~~~~SapGsVsQ- 194 (456)
T COG1066 135 IKLR--ADRLG-----LPTNNLYLLAETNLEDIIAELEQ------------EKPDLVVIDSIQTLYSEEITSAPGSVSQ- 194 (456)
T ss_pred HHHH--HHHhC-----CCccceEEehhcCHHHHHHHHHh------------cCCCEEEEeccceeecccccCCCCcHHH-
Confidence 4333 22222 12378888888877765544432 3569999999999999888877776665
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCc
Q 022155 167 SFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDF 246 (302)
Q Consensus 167 ~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~ 246 (302)
+++....|.++|++.|++++++.|++..-. -|++....|++|+.++++-+..
T Consensus 195 ---VRe~t~~L~~~AK~~~i~~fiVGHVTKeG~------------------------IAGPrvLEHmVDtVlyFEGd~~- 246 (456)
T COG1066 195 ---VREVAAELMRLAKTKNIAIFIVGHVTKEGA------------------------IAGPRVLEHMVDTVLYFEGDRH- 246 (456)
T ss_pred ---HHHHHHHHHHHHHHcCCeEEEEEEEccccc------------------------ccCchheeeeeeEEEEEeccCC-
Confidence 678889999999999999999999986432 1345667899999999988654
Q ss_pred hhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCce-eeEEEecCcccccC
Q 022155 247 VVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTS-CEFEITREGVFGVE 301 (302)
Q Consensus 247 ~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~-~~F~I~~~Gi~~~~ 301 (302)
...|.+|-+|+++-+.++ -.|+.+++|++.|.
T Consensus 247 -----------------------~~~RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~ 279 (456)
T COG1066 247 -----------------------SRYRILRSVKNRFGATNELGVFEMTENGLREVS 279 (456)
T ss_pred -----------------------CceeeeehhcccCCcccceeEEEEecCCeeEec
Confidence 468999999999987665 69999999998774
No 30
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.94 E-value=5e-26 Score=196.00 Aligned_cols=213 Identities=25% Similarity=0.302 Sum_probs=146.9
Q ss_pred cccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcC-CCCCCeEEEEeCCCCCCHHHHHHHHHHhCC
Q 022155 20 CTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSH-GGLSASSLYLHTEFPFPMRRLHQLSHTFRP 98 (302)
Q Consensus 20 i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~-gg~~~~vlyid~e~~~~~~rl~~i~~~~~~ 98 (302)
++||++.||++|+||+|+|+++.|+|+||+|||+|++|++.+.+ .. |. +|+||+++.+ ++.+.+-+.++..
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge---~vlyvs~ee~--~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGL---KNFGE---KVLYVSFEEP--PEELIENMKSFGW 72 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT-----EEEEESSS---HHHHHHHHHTTTS
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCC---cEEEEEecCC--HHHHHHHHHHcCC
Confidence 58999999999999999999999999999999999999998875 45 66 8999999865 3444444434321
Q ss_pred CCCCCC--CCcEEEEeCCCH------HHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHH
Q 022155 99 SNDHNP--CDYIFVQSVHSV------DQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLF 170 (302)
Q Consensus 99 ~~~~~~--l~~i~~~~~~~~------~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l 170 (302)
. .+.. ..++.+.+.... .++.+++..+.+.+++ .+.++|||||++.+.. . .. + .. +
T Consensus 73 d-~~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~-----~~~~~vVIDsls~l~~-~-~~-~--~~-----~ 136 (226)
T PF06745_consen 73 D-LEEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEE-----LKPDRVVIDSLSALLL-Y-DD-P--EE-----L 136 (226)
T ss_dssp --HHHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHH-----HTSSEEEEETHHHHTT-S-SS-G--GG-----H
T ss_pred c-HHHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHh-----cCCCEEEEECHHHHhh-c-CC-H--HH-----H
Confidence 1 1111 124666554332 2344555666666654 3459999999999832 1 11 1 11 3
Q ss_pred HHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhh-hcceEEEEEEecCchhc
Q 022155 171 FKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWAN-CVNSRLFLSRNEDFVVR 249 (302)
Q Consensus 171 ~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~-~~~~rl~l~~~~~~~~~ 249 (302)
+.++..|....++.++++|+|.|..... .+.....+.+ .+|..|.|...+.
T Consensus 137 r~~l~~l~~~l~~~~~t~llt~~~~~~~------------------------~~~~~~~i~~~l~D~vI~L~~~~~---- 188 (226)
T PF06745_consen 137 RRFLRALIKFLKSRGVTTLLTSEMPSGS------------------------EDDGTFGIEHYLADGVIELRYEEE---- 188 (226)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEESSSS------------------------SSSSSTSHHHHHSSEEEEEEEEEE----
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCc------------------------ccccccchhhhcccEEEEEEEEee----
Confidence 3556777777789999999999974321 1233455667 8999999998655
Q ss_pred ccccccCCCCCCCCCCcccccceEEEEEEECCCCC--CceeeEEEecCcccccCC
Q 022155 250 ENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA--DTSCEFEITREGVFGVER 302 (302)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~--~~~~~F~I~~~Gi~~~~~ 302 (302)
+ + ...|.++|.|.++.+ ...++|+|++.||+.+.|
T Consensus 189 ~-----~-------------~~~R~l~I~K~Rg~~~~~~~~~f~I~~~Gi~i~~~ 225 (226)
T PF06745_consen 189 G-----G-------------RIRRRLRIVKMRGSRHSTGIHPFEITPGGIEIYPP 225 (226)
T ss_dssp T-----T-------------EEEEEEEEEEETTS----BEEEEEEETTEEEEETT
T ss_pred C-----C-------------EEEEEEEEEEcCCCCCCCcEEEEEEECCeEEEecC
Confidence 1 1 579999999999884 568999999999998764
No 31
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.91 E-value=5.9e-23 Score=194.99 Aligned_cols=222 Identities=18% Similarity=0.142 Sum_probs=151.7
Q ss_pred CCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHH
Q 022155 14 PLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLS 93 (302)
Q Consensus 14 ~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~ 93 (302)
.....+++||++.||.+|+||+++|.++.|.||||+|||+|++|++.+.+ ..|. +|+|+++|++. +.+..-+
T Consensus 239 ~~~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge---~~~y~s~eEs~--~~i~~~~ 310 (484)
T TIGR02655 239 RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKE---RAILFAYEESR--AQLLRNA 310 (484)
T ss_pred cccccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCC---eEEEEEeeCCH--HHHHHHH
Confidence 34577899999999999999999999999999999999999999999986 5666 89999999763 3333333
Q ss_pred HHhCCCCCCCC-CCcEEEEeCC-CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHH
Q 022155 94 HTFRPSNDHNP-CDYIFVQSVH-SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFF 171 (302)
Q Consensus 94 ~~~~~~~~~~~-l~~i~~~~~~-~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~ 171 (302)
.++.-....-. -.++.+.... ....+.+.+..+.+.+++ .++++|||||++.++.. ++. .+. +
T Consensus 311 ~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~-----~~~~~vvIDsi~~~~~~-~~~----~~~-----r 375 (484)
T TIGR02655 311 YSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIAD-----FKPARIAIDSLSALARG-VSN----NAF-----R 375 (484)
T ss_pred HHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHH-----cCCCEEEEcCHHHHHHh-cCH----HHH-----H
Confidence 33321111001 1224444321 111223445555556654 45699999999998753 321 121 3
Q ss_pred HHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhccc
Q 022155 172 KISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVREN 251 (302)
Q Consensus 172 ~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~ 251 (302)
.++..|.+++++.++|+++|+........ ...+. ..-++.+|..|+|...+. +
T Consensus 376 ~~~~~l~~~lk~~~it~~~t~~~~~~~~~--------------------~~~~~--~~~s~l~D~ii~l~~~e~----~- 428 (484)
T TIGR02655 376 QFVIGVTGYAKQEEITGFFTNTSDQFMGS--------------------HSITD--SHISTITDTILMLQYVEI----R- 428 (484)
T ss_pred HHHHHHHHHHhhCCCeEEEeecccccccC--------------------CccCC--CCeeEeeeEEEEEEEEec----C-
Confidence 44566667778999999999886542211 01111 123578899999988765 1
Q ss_pred ccccCCCCCCCCCCcccccceEEEEEEECCCC--CCceeeEEEecCcccccCC
Q 022155 252 QMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHL--ADTSCEFEITREGVFGVER 302 (302)
Q Consensus 252 ~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~--~~~~~~F~I~~~Gi~~~~~ 302 (302)
| ..+|.+.|+|.+.. +....+|+|+++||+..+|
T Consensus 429 ----g-------------~~~r~i~V~K~R~~~~~~~~~~~~It~~Gi~v~~~ 464 (484)
T TIGR02655 429 ----G-------------EMSRAINVFKMRGSWHDKGIREFMISDKGPEIKDS 464 (484)
T ss_pred ----C-------------EEEEEEEEEEccCCCCCCceEEEEEcCCcEEEccc
Confidence 2 57888999999877 4567999999999987654
No 32
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.91 E-value=1.2e-22 Score=175.40 Aligned_cols=209 Identities=22% Similarity=0.304 Sum_probs=139.0
Q ss_pred ccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCC
Q 022155 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRP 98 (302)
Q Consensus 19 ~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~ 98 (302)
+++||++.||++|+||+++|+++.|+|+||+|||+|+++++.+.+ ..|. +|+|+++|.+. +.+.+.+..+..
T Consensus 1 ri~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~---~~~~is~e~~~--~~i~~~~~~~g~ 72 (229)
T TIGR03881 1 RLSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGD---PVIYVTTEESR--ESIIRQAAQFGM 72 (229)
T ss_pred CcCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH---hcCC---eEEEEEccCCH--HHHHHHHHHhCC
Confidence 479999999999999999999999999999999999999988764 3455 89999998653 333333333221
Q ss_pred CCCCCCC--CcEEEEe-------------CCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhH
Q 022155 99 SNDHNPC--DYIFVQS-------------VHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDL 163 (302)
Q Consensus 99 ~~~~~~l--~~i~~~~-------------~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~ 163 (302)
... ... .++.+.. ..+.++ +...+.+.++. .....+++||||++.++..+ + .
T Consensus 73 ~~~-~~~~~~~l~i~d~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~---~~~~~~~vvIDsl~~l~~~~----~--~ 139 (229)
T TIGR03881 73 DFE-KAIEEGKLVIIDALMKEKEDEWSLRELSIEE---LLNKVIEAKKY---LGYGHARLVIDSMSAFWLDK----P--A 139 (229)
T ss_pred CHH-HHhhcCCEEEEEccccccccccccccCCHHH---HHHHHHHHHHh---hccCceEEEecCchhhhccC----h--H
Confidence 100 000 1222221 123333 44444444432 01135899999999976422 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEe
Q 022155 164 KKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRN 243 (302)
Q Consensus 164 ~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~ 243 (302)
. .++++..|+++++++++|+|+++|....... ..+..-++.+|..|.|+..
T Consensus 140 ~-----~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~------------------------~~~~~~~~l~D~vI~L~~~ 190 (229)
T TIGR03881 140 M-----ARKYSYYLKRVLNRWNFTILLTSQYAITTSQ------------------------AFGFGIEHVADGIIRFRKV 190 (229)
T ss_pred H-----HHHHHHHHHHHHHhCCCEEEEEecccccCCC------------------------CcccceEEEEeEEEEEEEe
Confidence 1 2355677888888999999999995421111 0112235678999999876
Q ss_pred cCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCC--CCceeeEEEec-Ccccc
Q 022155 244 EDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHL--ADTSCEFEITR-EGVFG 299 (302)
Q Consensus 244 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~--~~~~~~F~I~~-~Gi~~ 299 (302)
.. + | ..+|+++|.|.++. +....+|+|++ +||+.
T Consensus 191 ~~-----~----~-------------~~~R~i~i~K~R~~~~~~~~~~~~I~~~~Gi~v 227 (229)
T TIGR03881 191 VV-----D----G-------------ELRRYLIVEKMRQTNHDKRAWEIDIVPGKGLVL 227 (229)
T ss_pred cc-----C----C-------------cEEEEEEEEeccCCCCCCceeEEEEcCCCceEE
Confidence 65 1 1 47899999999877 45678999995 89975
No 33
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.91 E-value=1.2e-22 Score=194.65 Aligned_cols=220 Identities=22% Similarity=0.252 Sum_probs=151.4
Q ss_pred CCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHH
Q 022155 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSH 94 (302)
Q Consensus 15 ~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~ 94 (302)
...++++||++.||.+|+||+++|.+++|.|+||+|||+|+++++.+.+ ..|. +|+||+++.+ ++.+.+.+.
T Consensus 250 ~~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~---~~g~---~~~yis~e~~--~~~i~~~~~ 321 (509)
T PRK09302 250 SSNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAAC---RRGE---RCLLFAFEES--RAQLIRNAR 321 (509)
T ss_pred cccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCC---cEEEEEecCC--HHHHHHHHH
Confidence 4577899999999999999999999999999999999999999998875 5566 9999999875 444444444
Q ss_pred HhCCCCCCCC-CCcEEEEeCC-CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHH
Q 022155 95 TFRPSNDHNP-CDYIFVQSVH-SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFK 172 (302)
Q Consensus 95 ~~~~~~~~~~-l~~i~~~~~~-~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~ 172 (302)
.+.....+.. ...+.+.... ....+.+.+..+.+.+.+ .++++|||||++.++... +... +.+
T Consensus 322 ~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~-----~~~~~vVIDslt~l~~~~------~~~~----~~~ 386 (509)
T PRK09302 322 SWGIDLEKMEEKGLLKIICARPESYGLEDHLIIIKREIEE-----FKPSRVAIDPLSALARGG------SLNE----FRQ 386 (509)
T ss_pred HcCCChHHHhhcCCceeecCCcccCCHHHHHHHHHHHHHH-----cCCCEEEEcCHHHHHHhC------CHHH----HHH
Confidence 4331111000 0112222111 111233444555555654 466999999999987532 1111 345
Q ss_pred HHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccc
Q 022155 173 ISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQ 252 (302)
Q Consensus 173 l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~ 252 (302)
++..|.++++++|+++|+|++........ ...+ ..+++++|+.|.|++.+. .
T Consensus 387 ~l~~l~~~~k~~~~t~l~t~~~~~~~g~~-------------------~~~~---~~~~~l~D~vI~L~~~~~----~-- 438 (509)
T PRK09302 387 FVIRLTDYLKSEEITGLFTNLTPDFMGSH-------------------SITE---SHISSLTDTWILLQYVEI----N-- 438 (509)
T ss_pred HHHHHHHHHHhCCCeEEEEeccccccCCC-------------------CCCc---CceEEeeeEEEEEEEeec----C--
Confidence 56777788889999999999976532110 0011 125688999999998765 1
Q ss_pred cccCCCCCCCCCCcccccceEEEEEEECCCC--CCceeeEEEecCcccccC
Q 022155 253 MVNGGVGGSGSEDFVCRRTRRSLHVVFAPHL--ADTSCEFEITREGVFGVE 301 (302)
Q Consensus 253 ~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~--~~~~~~F~I~~~Gi~~~~ 301 (302)
| ...|+++|.|.++. +....+|+|+++||+.-+
T Consensus 439 ---~-------------~~~R~l~I~K~Rg~~~~~~~~~f~It~~Gi~v~~ 473 (509)
T PRK09302 439 ---G-------------EMNRALYVLKMRGSWHSNQIREFVITDKGIHIKD 473 (509)
T ss_pred ---C-------------eeEEEEEEEEcCCCCCCCceEEEEEeCCcEEEcc
Confidence 1 46899999999877 466899999999997654
No 34
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.90 E-value=4e-22 Score=172.57 Aligned_cols=213 Identities=21% Similarity=0.256 Sum_probs=139.3
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHh
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTF 96 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~ 96 (302)
.++++||++.||.+|+||+|+|+++.|+|+||+|||+|+++++...+ ..|+ +|+|+++|.+.. +.++++ ..+
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~---~~~y~~~e~~~~-~~~~~~-~~~ 75 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL---KQGK---KVYVITTENTSK-SYLKQM-ESV 75 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH---hCCC---EEEEEEcCCCHH-HHHHHH-HHC
Confidence 45799999999999999999999999999999999999999988764 4566 999999997532 222322 233
Q ss_pred CCCCCCC-CCCcEEEEeC------CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHH
Q 022155 97 RPSNDHN-PCDYIFVQSV------HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFL 169 (302)
Q Consensus 97 ~~~~~~~-~l~~i~~~~~------~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~ 169 (302)
.....+. ....+.+... ........++..+.+.+.+ .+.+++||||++++.... +...
T Consensus 76 g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~-----~~~~~iviDs~t~~~~~~------~~~~---- 140 (234)
T PRK06067 76 KIDISDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKS-----KREDVIIIDSLTIFATYA------EEDD---- 140 (234)
T ss_pred CCChhHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHh-----cCCCEEEEecHHHHHhcC------CHHH----
Confidence 2111110 0112222111 1112334455566666653 456999999999864211 1111
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhc
Q 022155 170 FFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVR 249 (302)
Q Consensus 170 l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~ 249 (302)
+..++..|+.+++ .+++++++.|....... . -....+.++..+.|+..+.
T Consensus 141 ~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~---------------------~----~~~~~~l~DgvI~L~~~~~---- 190 (234)
T PRK06067 141 ILNFLTEAKNLVD-LGKTILITLHPYAFSEE---------------------L----LSRIRSICDVYLKLRAEQI---- 190 (234)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCcCCHH---------------------H----HHHHHhheEEEEEEEeecc----
Confidence 3455666666665 58899999885321110 0 0223567788888877543
Q ss_pred ccccccCCCCCCCCCCcccccceEEEEEEECCCCC--C-ceeeEEEec-Cccccc
Q 022155 250 ENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA--D-TSCEFEITR-EGVFGV 300 (302)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~--~-~~~~F~I~~-~Gi~~~ 300 (302)
+ | ..+|+++|.|.++.+ . ...+|.|++ .||+.+
T Consensus 191 -~----~-------------~~~r~l~i~K~Rg~~~~~~~~~~~~I~~~~Gi~v~ 227 (234)
T PRK06067 191 -G----G-------------RYVKVLEVVKLRGARKTTGNIISFDVDPAFGIKII 227 (234)
T ss_pred -C----C-------------EEeEEEEEEhhcCCCCCCCCEEEEEEcCCCCeEEE
Confidence 1 1 478999999988764 4 678999998 599865
No 35
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.90 E-value=5.2e-22 Score=170.78 Aligned_cols=213 Identities=22% Similarity=0.302 Sum_probs=137.2
Q ss_pred CChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCC
Q 022155 23 GCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDH 102 (302)
Q Consensus 23 G~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~ 102 (302)
|++.||++|+||+|+|++++|.|+||+|||+||++++.+.+ ..|+ +|+|+++|.+ ++.+.+-+..+.....
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~---~~g~---~~~y~s~e~~--~~~l~~~~~~~~~~~~- 71 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGL---KNGE---KAMYISLEER--EERILGYAKSKGWDLE- 71 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hCCC---eEEEEECCCC--HHHHHHHHHHcCCChH-
Confidence 78999999999999999999999999999999999998875 4465 8999999974 4555444444432111
Q ss_pred CCCC-cEEEEeCCCHH---HHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHH
Q 022155 103 NPCD-YIFVQSVHSVD---QLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLK 178 (302)
Q Consensus 103 ~~l~-~i~~~~~~~~~---~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~ 178 (302)
...+ ++.+.+....+ .+.++...+..++.+ .+++++||||++.+... .. +...+.+.+..+++.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~-----~~~~~vVIDsls~l~~~-~~----~~~~~r~~l~~l~~~-- 139 (224)
T TIGR03880 72 DYIDKSLYIVRLDPSDFKTSLNRIKNELPILIKE-----LGASRVVIDPISLLETL-FD----DDAERRTELFRFYSS-- 139 (224)
T ss_pred HHHhCCeEEEecCHHHHHhhHHHHHHHHHHHHHH-----hCCCEEEEcChHHHhhh-cC----CHHHHHHHHHHHHHH--
Confidence 1112 35555433211 133444555666654 46799999999986321 11 112222223333333
Q ss_pred HHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccccccCCC
Q 022155 179 AMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGV 258 (302)
Q Consensus 179 ~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~ 258 (302)
+ ++.+++++++.|........ .+ . ..-.++++..++|+.... .. .+
T Consensus 140 -l-k~~~~tvll~s~~~~~~~~~---------------------~~-~-~~~~~l~D~vI~L~~~~~----~~---~~-- 185 (224)
T TIGR03880 140 -L-RETGVTTILTSEADKTNVFA---------------------SK-Y-GLIEYLADGVIILKYVRN----SD---LR-- 185 (224)
T ss_pred -H-HhCCCEEEEEEcccCCCCCc---------------------cC-C-CceEEEEeEEEEEeeeec----cc---Cc--
Confidence 3 46799999999975411000 00 0 113467788888965443 00 00
Q ss_pred CCCCCCCcccccceEEEEEEECCCC--CCceeeEEEecCcccccC
Q 022155 259 GGSGSEDFVCRRTRRSLHVVFAPHL--ADTSCEFEITREGVFGVE 301 (302)
Q Consensus 259 ~~~~~~~~~~~~~~R~~~v~ks~~~--~~~~~~F~I~~~Gi~~~~ 301 (302)
..+|.++|+|.++. +....+|+|+++||+.+.
T Consensus 186 -----------~~~r~l~v~K~Rg~~~~~~~~~~~i~~~Gi~v~~ 219 (224)
T TIGR03880 186 -----------DVRLAVEVVKMRRSKHSREIKPYEITDSGITVYS 219 (224)
T ss_pred -----------ceEEEEEEEEccCCCCCCceEEEEEcCCcEEEec
Confidence 35678999999877 466889999999998763
No 36
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.89 E-value=5.8e-22 Score=188.22 Aligned_cols=215 Identities=19% Similarity=0.245 Sum_probs=142.4
Q ss_pred CccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcC-CCCCCeEEEEeCCCCCCHHHHHHHHHHh
Q 022155 18 EKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSH-GGLSASSLYLHTEFPFPMRRLHQLSHTF 96 (302)
Q Consensus 18 ~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~-gg~~~~vlyid~e~~~~~~rl~~i~~~~ 96 (302)
++++||+++||++|+||||+|.++.|.|+||+|||+||+|++.+.+ .. |. +|+||+.+.+ ++.+.+-+.++
T Consensus 1 ~r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~---~~~ge---~~lyvs~eE~--~~~l~~~~~~~ 72 (484)
T TIGR02655 1 AKIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI---IHFDE---PGVFVTFEES--PQDIIKNARSF 72 (484)
T ss_pred CcCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH---HhCCC---CEEEEEEecC--HHHHHHHHHHc
Confidence 4689999999999999999999999999999999999999988754 33 55 8999999854 55555555554
Q ss_pred CCCCCCC-CCCcEEEEeCCC---------HHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHH
Q 022155 97 RPSNDHN-PCDYIFVQSVHS---------VDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKR 166 (302)
Q Consensus 97 ~~~~~~~-~l~~i~~~~~~~---------~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r 166 (302)
.-...+. .-+++.+..... ..++.+.+..+...+.. ...+.|||||+++++... +. ....|
T Consensus 73 G~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~-----g~~qRVvIDSl~aL~~~~-~~---~~~~r 143 (484)
T TIGR02655 73 GWDLQKLVDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRK-----YKAKRVSIDSVTAVFQQY-DA---VSVVR 143 (484)
T ss_pred CCCHHHHhhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHH-----hCCcEEEEeehhHhhhhc-Cc---hHHHH
Confidence 3211100 112344433211 11344555666666654 556999999999975321 10 11222
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchh-hhhcceEEEEEEecC
Q 022155 167 SFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAW-ANCVNSRLFLSRNED 245 (302)
Q Consensus 167 ~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w-~~~~~~rl~l~~~~~ 245 (302)
. .+...++.+ ++.++|+|++.|........ ....+ .+.+|..|.|.....
T Consensus 144 ~----~l~~Li~~L-~~~g~TvLLtsh~~~~~~~~------------------------~~~~~~e~laDgVI~L~~~~~ 194 (484)
T TIGR02655 144 R----EIFRLVARL-KQIGVTTVMTTERIEEYGPI------------------------ARYGVEEFVSDNVVILRNVLE 194 (484)
T ss_pred H----HHHHHHHHH-HHCCCEEEEEecCccccccc------------------------ccCCceeEeeeeEEEEEEEec
Confidence 2 233334333 35799999999975432110 01122 567899999987654
Q ss_pred chhcccccccCCCCCCCCCCcccccceEEEEEEECCCCC--CceeeEEEecCccccc
Q 022155 246 FVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA--DTSCEFEITREGVFGV 300 (302)
Q Consensus 246 ~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~--~~~~~F~I~~~Gi~~~ 300 (302)
+ + ..+|.++|+|.++.+ ...++|+|+++||+.+
T Consensus 195 -----~----~-------------~~~R~l~I~K~Rgs~~~~~~~~~~It~~Gi~v~ 229 (484)
T TIGR02655 195 -----G----E-------------RRRRTLEILKLRGTSHMKGEYPFTITDHGINIF 229 (484)
T ss_pred -----C----C-------------EEEEEEEEEECCCCCcCCceEEEEEcCCcEEEE
Confidence 1 1 357999999998774 5678999999999864
No 37
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.89 E-value=9.3e-22 Score=188.46 Aligned_cols=221 Identities=19% Similarity=0.225 Sum_probs=145.8
Q ss_pred cCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcC-CCCCCeEEEEeCCCCCCHHHHH
Q 022155 12 DNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSH-GGLSASSLYLHTEFPFPMRRLH 90 (302)
Q Consensus 12 ~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~-gg~~~~vlyid~e~~~~~~rl~ 90 (302)
.-+...++++||++.||++|+||+|+|+++.|+|+||+|||+|++|++.+.+ .. |. +|+||++|.+ ++.+.
T Consensus 5 ~~~~~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~---~~~ge---~~lyis~ee~--~~~i~ 76 (509)
T PRK09302 5 SASPGIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGI---KRFDE---PGVFVTFEES--PEDII 76 (509)
T ss_pred ccCCCCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HhcCC---CEEEEEccCC--HHHHH
Confidence 3445677999999999999999999999999999999999999999998775 33 55 8999999975 44444
Q ss_pred HHHHHhCCCCCCCC--CCcEEEEeCCC---------HHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCC
Q 022155 91 QLSHTFRPSNDHNP--CDYIFVQSVHS---------VDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNT 159 (302)
Q Consensus 91 ~i~~~~~~~~~~~~--l~~i~~~~~~~---------~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~ 159 (302)
+-+.++... .... -.++.+..... ..++.+++..+.+.+.+ .+.+.|||||+++++... .
T Consensus 77 ~~~~~~g~d-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~-----~~~~~vVIDSls~l~~~~-d-- 147 (509)
T PRK09302 77 RNVASFGWD-LQKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDK-----IGAKRVVLDSIEALFSGF-S-- 147 (509)
T ss_pred HHHHHcCCC-HHHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHh-----hCCCEEEECCHHHHHhhc-c--
Confidence 444443311 1111 12333332211 11344566666666654 456999999999976421 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEE
Q 022155 160 MDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLF 239 (302)
Q Consensus 160 ~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~ 239 (302)
+... ++..+..|.+.+++.++|+|++.|........ .. .| .-.+.++..++
T Consensus 148 --~~~~----~r~~l~~L~~~Lk~~g~TvLlt~~~~~~~~~~---------------------~~-~~-~~~~laDgVI~ 198 (509)
T PRK09302 148 --NEAV----VRRELRRLFAWLKQKGVTAVITGERGDEYGPL---------------------TR-YG-VEEFVSDCVII 198 (509)
T ss_pred --CHHH----HHHHHHHHHHHHHhCCCEEEEEECCccCcCCc---------------------cc-cC-ceEEEeeEEEE
Confidence 1111 12333444445567899999999875421110 00 00 01346788888
Q ss_pred EEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCC--CceeeEEEecCccccc
Q 022155 240 LSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA--DTSCEFEITREGVFGV 300 (302)
Q Consensus 240 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~--~~~~~F~I~~~Gi~~~ 300 (302)
|..... + + ...|+++|.|.++.+ ...++|+|++.||+.+
T Consensus 199 L~~~~~-----~----~-------------~~~R~l~I~K~Rg~~~~~~~~~f~I~~~Gi~v~ 239 (509)
T PRK09302 199 LRNRLE-----G----E-------------KRTRTLRILKYRGTTHGKNEYPFTITEDGISVL 239 (509)
T ss_pred EeEEcc-----C----C-------------eEEEEEEEEECCCCCcCCccEEEEECCCcEEEE
Confidence 886544 1 1 357999999998875 4569999999999865
No 38
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.87 E-value=8.4e-21 Score=167.84 Aligned_cols=221 Identities=16% Similarity=0.184 Sum_probs=141.0
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH--HHHHHHHH
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM--RRLHQLSH 94 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~--~rl~~i~~ 94 (302)
.+.+|||++.||+++ ||+++|+++.|.|+||+|||+|+.+++.+++. ..|. +|+||+.|.+... .|+.+...
T Consensus 10 ~~~~~tg~~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~--~~g~---~vl~iS~E~~~~~~~~r~~~~~~ 83 (271)
T cd01122 10 NEEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLIT--QHGV---RVGTISLEEPVVRTARRLLGQYA 83 (271)
T ss_pred ccCCCCCcceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHH--hcCc---eEEEEEcccCHHHHHHHHHHHHh
Confidence 348899999999998 89999999999999999999999999998752 2255 8999999974321 22222211
Q ss_pred HhCCCCC---------------CCC--CCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccC
Q 022155 95 TFRPSND---------------HNP--CDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFD 157 (302)
Q Consensus 95 ~~~~~~~---------------~~~--l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~ 157 (302)
....... +.. ..++++........+.+++..+..+..+ .++++||||+++.+......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~-----~~~~~vvID~l~~l~~~~~~ 158 (271)
T cd01122 84 GKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVS-----HGIQHIIIDNLSIMVSDERA 158 (271)
T ss_pred CCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhc-----CCceEEEECCHHHHhccCCC
Confidence 1111100 000 1345555443322344555556555543 56799999999997643211
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCc-cccCCchhhhhcce
Q 022155 158 NTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPI-CPALGIAWANCVNS 236 (302)
Q Consensus 158 ~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~lG~~w~~~~~~ 236 (302)
. ..+...+.+++..|+.+|++++|+|++++|+...........+ ..... .-.+...+.+.++.
T Consensus 159 ~-----~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~-----------~~~~~~d~~gs~~i~~~aD~ 222 (271)
T cd01122 159 S-----GDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEG-----------GEVSLSDFRGSAAIGQLADN 222 (271)
T ss_pred c-----hhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccC-----------CCceEEeccCcHhHhhhccE
Confidence 1 1223346788999999999999999999999764322100000 00001 11223457788899
Q ss_pred EEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCC
Q 022155 237 RLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHL 283 (302)
Q Consensus 237 rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~ 283 (302)
.|.|.+... ++ ..+ ...|.++|.|.++.
T Consensus 223 vi~l~r~~~----~e--~~~-------------~~~~~i~v~K~R~~ 250 (271)
T cd01122 223 VIALERNQQ----AE--LDE-------------RNTTYLRILKNRFT 250 (271)
T ss_pred EEEEEecCc----cc--ccc-------------CCcEEEEEEeeccC
Confidence 999998654 10 001 35789999999976
No 39
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.82 E-value=8.8e-19 Score=150.91 Aligned_cols=213 Identities=16% Similarity=0.206 Sum_probs=135.3
Q ss_pred CccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhC
Q 022155 18 EKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFR 97 (302)
Q Consensus 18 ~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~ 97 (302)
.++.++++.||..++||+++|+++.|.|+||+|||+||++++...+ ..|. +++|++++.+. .+.++++ ..+.
T Consensus 4 ~~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~---~~g~---~~~yi~~e~~~-~~~~~~~-~~~g 75 (230)
T PRK08533 4 AKIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFL---QNGY---SVSYVSTQLTT-TEFIKQM-MSLG 75 (230)
T ss_pred EEEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH---hCCC---cEEEEeCCCCH-HHHHHHH-HHhC
Confidence 4678899999999999999999999999999999999999988764 4455 89999988754 2334444 2222
Q ss_pred CCCCC-CCCCcEEEEeC----CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHH
Q 022155 98 PSNDH-NPCDYIFVQSV----HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFK 172 (302)
Q Consensus 98 ~~~~~-~~l~~i~~~~~----~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~ 172 (302)
..... ...+++.+... ....+....+..+...... .+.+++|||++++.+.... +... ...
T Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~-----~~~~~lVIDe~t~~l~~~~-----d~~~----~~~ 141 (230)
T PRK08533 76 YDINKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRF-----YEKDVIIIDSLSSLISNDA-----SEVA----VND 141 (230)
T ss_pred CchHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHh-----cCCCEEEEECccHHhcCCc-----chHH----HHH
Confidence 11100 11123333221 1222223333333333321 3469999999999763321 1111 234
Q ss_pred HHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccc
Q 022155 173 ISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQ 252 (302)
Q Consensus 173 l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~ 252 (302)
+.+.|+.+++. +++++++.+....... .. ..-.+.+|..|.|+.... +
T Consensus 142 l~~~l~~l~~~-g~tvi~t~~~~~~~~~--------------------~~-----~~~~~~~DgvI~L~~~~~----~-- 189 (230)
T PRK08533 142 LMAFFKRISSL-NKVIILTANPKELDES--------------------VL-----TILRTAATMLIRLEVKVF----G-- 189 (230)
T ss_pred HHHHHHHHHhC-CCEEEEEecccccccc--------------------cc-----eeEEEeeeEEEEEEEeec----C--
Confidence 55666666544 7788888775421110 00 012577899999987665 1
Q ss_pred cccCCCCCCCCCCcccccceEEEEEEECCCCCC---ceeeEEEecC-ccccc
Q 022155 253 MVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLAD---TSCEFEITRE-GVFGV 300 (302)
Q Consensus 253 ~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~---~~~~F~I~~~-Gi~~~ 300 (302)
| ..+|++.|+|-++.+. ..++|+|.++ ||+..
T Consensus 190 ---~-------------~~~R~i~V~KmR~~~~~~~~~~~f~i~~~~g~~~~ 225 (230)
T PRK08533 190 ---G-------------DLKNSAKIVKYNMAKGSFQKSIPFRVEPKIGLAVE 225 (230)
T ss_pred ---C-------------EEEEEEEEEEecCCccccCCEEEEEEcCCccEEEE
Confidence 1 4689999999988754 4899999975 98754
No 40
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.80 E-value=4.8e-18 Score=149.37 Aligned_cols=215 Identities=24% Similarity=0.281 Sum_probs=139.3
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHh
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTF 96 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~ 96 (302)
.+++|||++.||++|+||+|+|.++.|+|+||||||+|++|++.+.+ ..|. +|+||+++.+ ++.+.+.+..+
T Consensus 2 ~~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~---~~ge---~vlyvs~~e~--~~~l~~~~~~~ 73 (260)
T COG0467 2 MERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGA---REGE---PVLYVSTEES--PEELLENARSF 73 (260)
T ss_pred CccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHH---hcCC---cEEEEEecCC--HHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999986 5566 8999999864 44444444433
Q ss_pred CCCCCCCCCC--cEEEE------------eCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhh
Q 022155 97 RPSNDHNPCD--YIFVQ------------SVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDD 162 (302)
Q Consensus 97 ~~~~~~~~l~--~i~~~------------~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~ 162 (302)
.-... ...+ .+.+. ...+...+..+...+.+..+. .+...+||||++.+.... .. .
T Consensus 74 g~d~~-~~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~-----~~~~~~ViDsi~~~~~~~-~~---~ 143 (260)
T COG0467 74 GWDLE-VYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEK-----EGADRVVIDSITELTLYL-ND---P 143 (260)
T ss_pred CCCHH-HHhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHH-----hCCCEEEEeCCchHhhhc-Cc---h
Confidence 21110 0000 01110 011112233455556666654 346999999999754322 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEE
Q 022155 163 LKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSR 242 (302)
Q Consensus 163 ~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~ 242 (302)
.. .+.+...+..+.++.+++.+++.+........ .... . +.++..+.|..
T Consensus 144 ~~-----~r~~~~~l~~~~~~~~~t~~~~~~~~~~~~~~------------------~~~~----~---~~vdgvI~l~~ 193 (260)
T COG0467 144 AL-----VRRILLLLKRFLKKLGVTSLLTTEAPVEERGE------------------SGVE----E---YIVDGVIRLDL 193 (260)
T ss_pred HH-----HHHHHHHHHHHHHhCCCEEEEEecccccCCCc------------------cceE----E---EEEEEEEEEee
Confidence 11 13566777788888889999998864322110 0011 1 24677777777
Q ss_pred ecCchhcccccccCCCCCCCCCCcccccceE-EEEEEECCCCC--CceeeEEEec-CcccccC
Q 022155 243 NEDFVVRENQMVNGGVGGSGSEDFVCRRTRR-SLHVVFAPHLA--DTSCEFEITR-EGVFGVE 301 (302)
Q Consensus 243 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R-~~~v~ks~~~~--~~~~~F~I~~-~Gi~~~~ 301 (302)
... ++ ...| ++++.|-+..+ ....+|.|++ +||..+.
T Consensus 194 ~~~----~~------------------~~~r~~~~i~k~r~~~~~~~~~~~~i~~g~gi~i~~ 234 (260)
T COG0467 194 KEI----EG------------------GGDRRYLRILKMRGTPHSLKVIPFEITDGEGIVVYP 234 (260)
T ss_pred ecc----cC------------------ceEEEEEEEEeccccccCCceeceEEecCCcEEEec
Confidence 554 11 2344 99999988764 5689999999 7987653
No 41
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.79 E-value=2.5e-18 Score=149.53 Aligned_cols=215 Identities=20% Similarity=0.204 Sum_probs=131.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHH-HHhCCCCC---
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLS-HTFRPSND--- 101 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~-~~~~~~~~--- 101 (302)
.||.+++ |+++|+++.|+|+||+|||+|+++++.+.+. ..|. +|+|++.|.+... -+.++. ........
T Consensus 2 ~LD~~~~-Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~--~~g~---~vly~s~E~~~~~-~~~r~~~~~~~~~~~~~~ 74 (242)
T cd00984 2 DLDNLTG-GLQPGDLIIIAARPSMGKTAFALNIAENIAK--KQGK---PVLFFSLEMSKEQ-LLQRLLASESGISLSKLR 74 (242)
T ss_pred chhhhhc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--hCCC---ceEEEeCCCCHHH-HHHHHHHHhcCCCHHHHh
Confidence 6899985 9999999999999999999999999998862 1255 8999999975322 112221 11110000
Q ss_pred C----------------C-CCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHH
Q 022155 102 H----------------N-PCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLK 164 (302)
Q Consensus 102 ~----------------~-~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~ 164 (302)
. . .-.++++..... ..+.++...+..+..+ .++++||||+++.+.... .. .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~l~~~i~~~~~~-----~~~~~vvID~l~~l~~~~-~~-----~ 142 (242)
T cd00984 75 TGSLSDEDWERLAEAIGELKELPIYIDDSSS-LTVSDIRSRARRLKKE-----HGLGLIVIDYLQLMSGSK-KK-----G 142 (242)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCEEEeCCCC-CCHHHHHHHHHHHHHh-----cCCCEEEEcCchhcCCCC-CC-----C
Confidence 0 0 011344432211 1233344455555443 477999999999865322 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCcccc-CCchhhhhcceEEEEEEe
Q 022155 165 KRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPA-LGIAWANCVNSRLFLSRN 243 (302)
Q Consensus 165 ~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-lG~~w~~~~~~rl~l~~~ 243 (302)
.+...+..++..|+.+|+++++++|+++|+......... ..+..... ....+.+.++..+.|.+.
T Consensus 143 ~~~~~~~~~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~--------------~~~~~~~~~gS~~i~~~aD~vi~l~~~ 208 (242)
T cd00984 143 NRQQEVAEISRSLKLLAKELNVPVIALSQLSRGVESRAD--------------KRPMLSDLRESGSIEQDADVVMFLYRD 208 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEecccChhhhccCC--------------CCCCHHHHhhhcccccCCCEEEEEecc
Confidence 233346889999999999999999999999764321100 00011111 123456778999999987
Q ss_pred cCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeE
Q 022155 244 EDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEF 290 (302)
Q Consensus 244 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F 290 (302)
+.... +. . ....-.++|.|.|+-+...+.+
T Consensus 209 ~~~~~-~~----~------------~~~~~~l~v~KnR~G~~g~~~l 238 (242)
T cd00984 209 EYYNK-ES----E------------SKGIAEIIVAKNRNGPTGTVEL 238 (242)
T ss_pred ccccc-cc----C------------CCCceEEEEECCCCCCCeeEEE
Confidence 64100 00 0 0245688899999876655544
No 42
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.78 E-value=2.3e-17 Score=155.39 Aligned_cols=223 Identities=17% Similarity=0.229 Sum_probs=140.1
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH--HHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM--RRLHQLS 93 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~--~rl~~i~ 93 (302)
....++||++.||+++ ||+++|+++.|.|+||+|||+|+++++.+.+. ..|. +|+|++.|.+... .|+....
T Consensus 174 ~~~gi~tG~~~LD~~~-~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~--~~g~---~vl~~SlEm~~~~i~~R~~~~~ 247 (434)
T TIGR00665 174 GITGVPTGFTDLDKLT-SGLQPSDLIILAARPSMGKTAFALNIAENAAI--KEGK---PVAFFSLEMSAEQLAMRMLSSE 247 (434)
T ss_pred CCCcccCCchhhHhhc-CCCCCCeEEEEEeCCCCChHHHHHHHHHHHHH--hCCC---eEEEEeCcCCHHHHHHHHHHHh
Confidence 4567999999999998 69999999999999999999999999998752 2344 7999999965322 2222111
Q ss_pred HHhC-----C--CCCC---------CCC--CcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhc
Q 022155 94 HTFR-----P--SNDH---------NPC--DYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSD 155 (302)
Q Consensus 94 ~~~~-----~--~~~~---------~~l--~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~ 155 (302)
.... . .... ..+ .++++....+ ..+.++...+..+..+ .++++||||+++.+....
T Consensus 248 ~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~-~~~~~i~~~i~~~~~~-----~~~~~vvID~l~~i~~~~ 321 (434)
T TIGR00665 248 SRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPG-LTITELRAKARRLKRE-----HGLGLIVIDYLQLMSGSG 321 (434)
T ss_pred cCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHh-----cCCCEEEEcchHhcCCCC
Confidence 1100 0 0000 000 1344433221 1233344444445443 468999999999863211
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC-----Cchh
Q 022155 156 FDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL-----GIAW 230 (302)
Q Consensus 156 ~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-----G~~w 230 (302)
. . ..|...+..+++.|+.+|++++|+||++.|+........ ...|.+ ...+
T Consensus 322 ~-~-----~~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~------------------~~~p~lsdlr~Sg~i 377 (434)
T TIGR00665 322 R-S-----ENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQRE------------------DKRPQLSDLRESGSI 377 (434)
T ss_pred C-C-----CCHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccC------------------CCCCChHHHhhccch
Confidence 1 0 124455788999999999999999999999977543211 112222 1346
Q ss_pred hhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEE
Q 022155 231 ANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFE 291 (302)
Q Consensus 231 ~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~ 291 (302)
.+.++..++|.|..... ++... ...-.+.|.|.+..+...+.|.
T Consensus 378 eq~aD~vi~l~r~~~~~--~~~~~---------------~~~~~l~v~KnR~G~~g~~~l~ 421 (434)
T TIGR00665 378 EQDADIVMFLYRDEYYN--PDSED---------------KGIAEIIIAKQRNGPTGTVKLA 421 (434)
T ss_pred hhcCCEEEEeccccccC--CCcCC---------------CCceEEEEecCCCCCCCeEEEE
Confidence 67789999998865310 00000 1346788889998766554443
No 43
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.77 E-value=1.8e-17 Score=155.44 Aligned_cols=217 Identities=18% Similarity=0.207 Sum_probs=139.1
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH-HHHHHH
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL-HQLSHT 95 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl-~~i~~~ 95 (302)
...++||++.||++++ |+.+|+++.|.|+||+|||+|+++++.+++. ..|. +|+|++.|.+ .+++ .++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~--~~g~---~v~~fSlEm~--~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVAL--REGK---PVLFFSLEMS--AEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHH--hCCC---cEEEEECCCC--HHHHHHHHHHH
Confidence 5679999999999985 9999999999999999999999999988753 2344 8999999964 3333 222221
Q ss_pred hCCCCCC-----C--------------C--CCcEEEEeC--CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 96 FRPSNDH-----N--------------P--CDYIFVQSV--HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 96 ~~~~~~~-----~--------------~--l~~i~~~~~--~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
....... . . -.++++... .+.+++.+ .+..+..+ ..++++||||+++.+.
T Consensus 246 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~---~~r~~~~~----~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 246 KSGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRS---IARRIKRK----KGGLDLIVVDYIQLMA 318 (421)
T ss_pred HcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHH---HHHHHHHh----cCCCCEEEEecccccC
Confidence 1110000 0 0 014555443 33444443 33333332 2358999999999864
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC-----C
Q 022155 153 RSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL-----G 227 (302)
Q Consensus 153 ~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-----G 227 (302)
.. .+ ..|...+..+++.||.||++++|+||+++|+........ ...|.+ .
T Consensus 319 ~~--~~-----~~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~------------------~krp~lsdlr~S 373 (421)
T TIGR03600 319 PT--RG-----RDRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRT------------------DKRPIMSDLRDS 373 (421)
T ss_pred CC--CC-----CCHHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcC------------------CCCCChHHHhhc
Confidence 32 11 124455789999999999999999999999977543211 112221 1
Q ss_pred chhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeE
Q 022155 228 IAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEF 290 (302)
Q Consensus 228 ~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F 290 (302)
..+.+-+|+.++|.|..... .+ .++ ...-.+.|.|.+..|...+.+
T Consensus 374 g~Ieq~AD~v~~l~R~~~~~-~~------------~~~----~~~~el~v~K~R~G~~g~~~l 419 (421)
T TIGR03600 374 GAIEQDADVIGLIHREGYYD-AR------------EPP----AGVAELILAKNRHGPTGTVEL 419 (421)
T ss_pred CCccccCcEEEEeccccccC-Cc------------cCC----CCceEEEEECCCCCCCceEEe
Confidence 23456678999999875411 00 000 124568888999877666554
No 44
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.77 E-value=1.4e-17 Score=146.37 Aligned_cols=221 Identities=24% Similarity=0.331 Sum_probs=133.3
Q ss_pred ccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH--HHHHHHHHHh
Q 022155 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM--RRLHQLSHTF 96 (302)
Q Consensus 19 ~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~--~rl~~i~~~~ 96 (302)
.++||++.||+++ ||+.+|+++.|.|+||+|||+|++++|.+++. ..+. .|+|++.|.+-.. .|+-......
T Consensus 1 Gi~TG~~~LD~~l-gG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~--~~~~---~vly~SlEm~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 1 GIPTGFPALDRLL-GGLRPGELTVIAARPGVGKTAFALQIALNAAL--NGGY---PVLYFSLEMSEEELAARLLARLSGV 74 (259)
T ss_dssp SB-SSTHHHHHHH-SSB-TT-EEEEEESTTSSHHHHHHHHHHHHHH--TTSS---EEEEEESSS-HHHHHHHHHHHHHTS
T ss_pred CCCCChHHHHHHh-cCCCcCcEEEEEecccCCchHHHHHHHHHHHH--hcCC---eEEEEcCCCCHHHHHHHHHHHhhcc
Confidence 3799999999998 59999999999999999999999999999863 1233 8999999965322 2221111110
Q ss_pred C-----CCC--CC---------CCC--CcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhcc
Q 022155 97 R-----PSN--DH---------NPC--DYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDF 156 (302)
Q Consensus 97 ~-----~~~--~~---------~~l--~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~ 156 (302)
. ... .+ ..+ ..+++.... +.+++.+.+.. +..+ ..++++||||.++.+-...
T Consensus 75 ~~~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~---~~~~----~~~~~~v~IDyl~ll~~~~- 146 (259)
T PF03796_consen 75 PYNKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRR---LKRE----GKKVDVVFIDYLQLLKSED- 146 (259)
T ss_dssp THHHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHH---HHHH----STTEEEEEEEEGGGSBTSC-
T ss_pred hhhhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHH---HHhh----ccCCCEEEechHHHhcCCC-
Confidence 0 000 00 000 135554432 44455444433 3222 2578999999999865432
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCcccc-----CCchhh
Q 022155 157 DNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPA-----LGIAWA 231 (302)
Q Consensus 157 ~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----lG~~w~ 231 (302)
... .+...+..+++.|+.+|++++++||++.|+........ ...|. .+....
T Consensus 147 ~~~-----~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~------------------~~~p~l~dl~~sg~Ie 203 (259)
T PF03796_consen 147 SSD-----NRRQEIGEISRELKALAKELNIPVIALSQLNREAEDRE------------------DKRPSLSDLRESGAIE 203 (259)
T ss_dssp SSS-----CCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSS------------------SCS--HHHHCSTSSHH
T ss_pred CCC-----CHHHHHHHHHHHHHHHHHHcCCeEEEccccChhhhccc------------------ccccchhhhhhhHHHH
Confidence 111 12233788999999999999999999999976543211 11222 123456
Q ss_pred hhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEe
Q 022155 232 NCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEIT 293 (302)
Q Consensus 232 ~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~ 293 (302)
+.+++.++|.|.+... ++. .. ...=.+.|.|.++.+...+.+...
T Consensus 204 ~~AD~vl~l~r~~~~~--~~~----------~~-----~~~~~l~v~KnR~G~~g~v~~~f~ 248 (259)
T PF03796_consen 204 QDADVVLFLHRDEKYD--EDR----------DD-----KGEAELIVAKNRNGPTGTVPLRFN 248 (259)
T ss_dssp HH-SEEEEEEEHCHCH--CCS----------SC-----TTEEEEEEEEESSS--EEEEEEEE
T ss_pred HHHhhhhhhccchhhc--ccc----------CC-----CCeEEEEEEecCCCCCceEEEEEE
Confidence 7789999999875411 000 00 125577889999776665554443
No 45
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=99.76 E-value=1.4e-17 Score=136.78 Aligned_cols=201 Identities=20% Similarity=0.170 Sum_probs=150.4
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCC--------------
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSN-------------- 100 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~-------------- 100 (302)
...|.++||.||.+||||+++.|+++.+.+|...||++..|+|||++..|+..|+.++....-...
T Consensus 35 ~daG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~ 114 (293)
T KOG2859|consen 35 ADAGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEE 114 (293)
T ss_pred cccCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHh
Confidence 447999999999999999999999999999999999999999999999999999987766521100
Q ss_pred C-----CCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHH
Q 022155 101 D-----HNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISG 175 (302)
Q Consensus 101 ~-----~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~ 175 (302)
. ..++.++.+..|.+..++...+..++..+.+ ...+.++++||++++||.+.............-++.+..
T Consensus 115 ~~eEi~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~----~p~~cll~~DslsaFyW~Dr~~~le~~n~~~~~lr~~~q 190 (293)
T KOG2859|consen 115 QLEEIAGECMSRFRFVNCFASDDLLTSLIDLRYAIIN----DPGICLLAMDSLSAFYWLDRPKILEKRNSMYRHLRLLQQ 190 (293)
T ss_pred HHHHHHHHHHhhEEEEEeeccHHHHHHHHHHHHHHhc----CCceeEEeecchhhheeecccchHhhhhhHHHHHHHHHH
Confidence 0 1456789999999999998888888888775 456899999999999998755442222222334678889
Q ss_pred HHHHHHHHcCcEEEEEecccccC----CCCCC-CCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecC
Q 022155 176 MLKAMAVGFGLAVLVTNQVVDLM----EPNEG-VNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245 (302)
Q Consensus 176 ~L~~la~~~~~~viv~n~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~ 245 (302)
.|++|++.+...++.|.+..-.- +++.. ..|-+.-.+ .....|.+-..|...+.+++.+++..+
T Consensus 191 ~LeKL~~d~~lv~~aT~~ti~~e~y~~~En~P~~~gRsvCll------liky~~~~~k~~qq~v~h~l~~sks~d 259 (293)
T KOG2859|consen 191 RLEKLCKDAILVGMATVETIFLENYRFGENLPEAGGRSVCLL------LIKYHVRMQKIQQQIVLHGLPLSKSND 259 (293)
T ss_pred HHHHHHhhheeeeeeehhHHHHhcccccccCccccccceeee------eccccHHHHHHHHHHHHccCceecccc
Confidence 99999999999999988754221 11100 000000000 024567777889999999999999876
No 46
>PRK08760 replicative DNA helicase; Provisional
Probab=99.76 E-value=3.4e-17 Score=154.77 Aligned_cols=222 Identities=19% Similarity=0.225 Sum_probs=141.0
Q ss_pred CCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH--HHHHHH
Q 022155 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM--RRLHQL 92 (302)
Q Consensus 15 ~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~--~rl~~i 92 (302)
.....++||++.||.++ ||+.+|+++.|.|+||+|||+|++++|.+++. ..|. +|+|++.|.+... .|+...
T Consensus 207 ~~~~Gi~TG~~~LD~~t-~G~~~G~LivIaarPg~GKTafal~iA~~~a~--~~g~---~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 207 GNITGLPTGYNDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAI--KSKK---GVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred CCCCcccCCcHHHHHHh-cCCCCCceEEEEeCCCCChhHHHHHHHHHHHH--hcCC---ceEEEeccCCHHHHHHHHHHh
Confidence 34567999999999987 67999999999999999999999999998753 2343 7999999865322 222211
Q ss_pred HHH-----hCCCC-CC----------CCC--CcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 93 SHT-----FRPSN-DH----------NPC--DYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 93 ~~~-----~~~~~-~~----------~~l--~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
... +.... .. ..+ .++++.... +.+++. ..+..+..+ .++++||||+++.+-
T Consensus 281 ~s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~---~~~r~l~~~-----~~~~lVvIDyLql~~ 352 (476)
T PRK08760 281 NGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLR---SKCRRLKRE-----HDLGLIVIDYLQLMS 352 (476)
T ss_pred hCCCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHH---HHHHHHHHh-----cCCCEEEEecHHhcC
Confidence 100 00000 00 000 245554433 334443 444444332 568999999998753
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC-----C
Q 022155 153 RSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL-----G 227 (302)
Q Consensus 153 ~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-----G 227 (302)
... .. ..|...+..+++.||.||++++|+||++.|+....... ....|.+ .
T Consensus 353 ~~~---~~---~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r------------------~~krP~lsDLreS 408 (476)
T PRK08760 353 VPG---NS---ENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETR------------------TDKRPVMADLRES 408 (476)
T ss_pred CCC---CC---cccHHHHHHHHHHHHHHHHHhCCEEEEeeccCcccccc------------------CCCCCCHHHHhhc
Confidence 211 10 23555678999999999999999999999998765421 1122322 2
Q ss_pred chhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeE
Q 022155 228 IAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEF 290 (302)
Q Consensus 228 ~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F 290 (302)
-.|.+-+|..++|.|..... .++. . ....-.+.|.|.+..|...+.+
T Consensus 409 g~IeqdAD~vl~l~R~~~y~-~~~~--------------~-~~~~~eliiaKnR~G~~g~~~l 455 (476)
T PRK08760 409 GAIEQDADMIVFIYRDDYYN-KENS--------------P-DKGLAEIIIGKHRGGPTGSCKL 455 (476)
T ss_pred cchhcCCCEEEEEechhhcc-cccc--------------c-CCCceEEEEEccCCCCCceEEE
Confidence 45777889999998864310 0100 0 0134567888999887665443
No 47
>PRK05748 replicative DNA helicase; Provisional
Probab=99.76 E-value=6.8e-17 Score=152.49 Aligned_cols=223 Identities=16% Similarity=0.182 Sum_probs=141.7
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHT 95 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~ 95 (302)
....++||++.||+++ ||+++|+++.|.|+||+|||+|+++++.+++. ..|. +|+||+.|.+... -+.++...
T Consensus 182 ~~~gi~TG~~~LD~~~-~G~~~G~livIaarpg~GKT~~al~ia~~~a~--~~g~---~v~~fSlEms~~~-l~~R~l~~ 254 (448)
T PRK05748 182 DITGIPTGFTDLDKMT-SGLQPNDLIIVAARPSVGKTAFALNIAQNVAT--KTDK---NVAIFSLEMGAES-LVMRMLCA 254 (448)
T ss_pred CCCCccCChHHHHHhc-CCCCCCceEEEEeCCCCCchHHHHHHHHHHHH--hCCC---eEEEEeCCCCHHH-HHHHHHHH
Confidence 4578999999999997 59999999999999999999999999998752 2354 8999999965321 12222222
Q ss_pred hCCCCC---------C-C---------CC--CcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 96 FRPSND---------H-N---------PC--DYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 96 ~~~~~~---------~-~---------~l--~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
...... . . .+ .++++.... +..+ +...+..+..+ ..++++||||+|+.+-
T Consensus 255 ~~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~---i~~~~r~~~~~----~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 255 EGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTE---IRARCRRLAQE----HGGLGLILIDYLQLIQ 327 (448)
T ss_pred hcCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHH---HHHHHHHHHHh----cCCCCEEEEccchhcC
Confidence 111000 0 0 00 134554332 3334 44444444443 2268999999999863
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC-----C
Q 022155 153 RSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL-----G 227 (302)
Q Consensus 153 ~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-----G 227 (302)
... .. . ..|.+.+..+++.||.||++++|+||++.|+....... ....|.+ .
T Consensus 328 ~~~-~~-~---~~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r------------------~~k~p~lsdlr~S 384 (448)
T PRK05748 328 GSG-RS-G---ENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQR------------------QDKRPVMSDIRES 384 (448)
T ss_pred CCC-CC-C---cCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhc------------------CCCCCChHHHHhh
Confidence 211 10 0 23556688999999999999999999999998754321 1123322 2
Q ss_pred chhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEE
Q 022155 228 IAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEI 292 (302)
Q Consensus 228 ~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I 292 (302)
-.+.+.+|..++|.|.+.. ..+ ... ...=.+.|.|.+..|...+.|.-
T Consensus 385 g~Ieq~AD~v~~l~r~~~~-~~~-~~~---------------~~~~e~~v~K~R~G~~g~~~~~~ 432 (448)
T PRK05748 385 GSIEQDADIVAFLYRDDYY-DEE-TEN---------------KNTIEIIIAKQRNGPVGTVELAF 432 (448)
T ss_pred cchhcCCCEEEEEeccccc-Ccc-ccC---------------CCceEEEEeccCCCCCceEEEEE
Confidence 3456777999999986531 000 000 12346777899988766555443
No 48
>PRK06321 replicative DNA helicase; Provisional
Probab=99.74 E-value=1.3e-16 Score=150.22 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=139.7
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHh
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTF 96 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~ 96 (302)
...+|||++.||+++ ||+++|+++.|.|.||+|||+|+++++.+++. ..|. +|+||+.|.+-.. -..++....
T Consensus 206 ~~Gi~tG~~~LD~~t-~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~--~~g~---~v~~fSLEMs~~q-l~~Rlla~~ 278 (472)
T PRK06321 206 ISGIPTHFIDLDKMI-NGFSPSNLMILAARPAMGKTALALNIAENFCF--QNRL---PVGIFSLEMTVDQ-LIHRIICSR 278 (472)
T ss_pred CCccccCcHHHHHHh-cCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH--hcCC---eEEEEeccCCHHH-HHHHHHHhh
Confidence 468999999999998 59999999999999999999999999998753 2344 7999999864321 111221111
Q ss_pred CCCC---------CC----------CC--CCcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 97 RPSN---------DH----------NP--CDYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 97 ~~~~---------~~----------~~--l~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
.... .. .. -.++++.+.. +..+ +...+..+..+ .++++||||+|+.+-.
T Consensus 279 s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~---i~~~~r~~~~~-----~~~~lvvIDyLql~~~ 350 (472)
T PRK06321 279 SEVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITD---LRARARRMKES-----YDIQFLIIDYLQLLSG 350 (472)
T ss_pred cCCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHH---HHHHHHHHHHh-----cCCCEEEEcchHHcCC
Confidence 0000 00 00 0134444322 3334 33444444332 5689999999987531
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC-----Cc
Q 022155 154 SDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL-----GI 228 (302)
Q Consensus 154 ~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-----G~ 228 (302)
... .. ....|...+..+++.||.+|++++|+||++.|+........ ...|.+ .-
T Consensus 351 ~~~-~~--~~~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~------------------~krP~lsDLReSG 409 (472)
T PRK06321 351 SGN-LR--NSESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRA------------------NHRPMMSDLRESG 409 (472)
T ss_pred CCc-cC--CcchHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccC------------------CCCCCHHHHhhcc
Confidence 110 00 11345566889999999999999999999999987654321 122322 23
Q ss_pred hhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEE
Q 022155 229 AWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFE 291 (302)
Q Consensus 229 ~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~ 291 (302)
.+..-+|..++|.|.+. +..+. ....-.+.|.|.+..|...+.|.
T Consensus 410 ~IEqdAD~v~~l~R~~~-y~~~~-----------------~~~~~elivaKnR~G~~G~v~l~ 454 (472)
T PRK06321 410 SIEQDSDLVMFLLRREY-YDPND-----------------KPGTAELIVAKNRHGSIGSVPLV 454 (472)
T ss_pred cccccCCEEEEEechhh-cCCcC-----------------CCCceEEEEEecCCCCCceEEEE
Confidence 46677899999998543 10000 01245777889988776654443
No 49
>PHA02542 41 41 helicase; Provisional
Probab=99.74 E-value=2.4e-16 Score=148.32 Aligned_cols=220 Identities=11% Similarity=0.131 Sum_probs=137.4
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH--HHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM--RRLHQLS 93 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~--~rl~~i~ 93 (302)
....+|||++.||.+++||+.+|+++.|.|+||.|||+|++++|.+++ ..|. +|+||+.|.+... .|+....
T Consensus 168 ~~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a---~~g~---~Vl~fSLEM~~~ql~~Rl~a~~ 241 (473)
T PHA02542 168 KANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYL---QQGY---NVLYISMEMAEEVIAKRIDANL 241 (473)
T ss_pred CCCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHH---hcCC---cEEEEeccCCHHHHHHHHHHHH
Confidence 367899999999999989999999999999999999999999999985 4455 8999999865322 1221110
Q ss_pred HHhC-----CCCCC-----------CCCCcEEEEe----CCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 94 HTFR-----PSNDH-----------NPCDYIFVQS----VHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 94 ~~~~-----~~~~~-----------~~l~~i~~~~----~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
.... ....+ ..-.++++.. ..+..++...+.++. .+ ...++++||||+++.+-.
T Consensus 242 ~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk---~~---~g~~~dlVvIDYLqL~~~ 315 (473)
T PHA02542 242 LDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELK---LK---KNFKPDVIIVDYLGICAS 315 (473)
T ss_pred cCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHH---Hh---cCCCCCEEEEechhhccC
Confidence 0000 00000 0012343332 123444444444332 21 012479999999988642
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhh
Q 022155 154 SDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANC 233 (302)
Q Consensus 154 ~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~ 233 (302)
....... ..|.+.+..+++.||.||++++|+||++.|+......... +. + +.++-+ -...+-
T Consensus 316 ~~~~~~~---~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~d-P~--------l----sDLreS--G~IEqd 377 (473)
T PHA02542 316 SRLRVSS---ENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSD-VD--------M----SDTAES--AGLPAT 377 (473)
T ss_pred CcccCCC---CChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCC-Cc--------c----hhcccc--cchHhh
Confidence 2211111 2355568899999999999999999999999876543210 00 0 011111 223456
Q ss_pred cceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCc
Q 022155 234 VNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADT 286 (302)
Q Consensus 234 ~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~ 286 (302)
+|..++|.|.+.. ++ .....+.|.|+++.|..
T Consensus 378 AD~vl~l~r~~~~---~~------------------~~~~eliv~KnR~G~~g 409 (473)
T PHA02542 378 ADFMLAVIETEEL---AQ------------------MGQQLVKQLKSRYGDKN 409 (473)
T ss_pred cCEEEEEecCccc---cc------------------CCeEEEEEecCCCCCCC
Confidence 7888999885531 00 13567888899987744
No 50
>PRK05595 replicative DNA helicase; Provisional
Probab=99.74 E-value=2e-16 Score=149.04 Aligned_cols=224 Identities=17% Similarity=0.188 Sum_probs=140.3
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH--HHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM--RRLHQLS 93 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~--~rl~~i~ 93 (302)
....++||++.||+++ ||+.+|+++.|.|.||+|||+|+++++.+++. ..|. +|+|++.|.+... .|+....
T Consensus 180 ~~~gi~tg~~~ld~~~-~G~~~g~liviaarpg~GKT~~al~ia~~~a~--~~g~---~vl~fSlEms~~~l~~R~~a~~ 253 (444)
T PRK05595 180 ETTGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAAL--REGK---SVAIFSLEMSKEQLAYKLLCSE 253 (444)
T ss_pred CCCcccCChHHHHHhc-CCCCCCcEEEEEecCCCChHHHHHHHHHHHHH--HcCC---cEEEEecCCCHHHHHHHHHHHh
Confidence 3467999999999997 79999999999999999999999999987542 3354 8999999864221 2221111
Q ss_pred HHhC-----C-CCCC----------C--CCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhc
Q 022155 94 HTFR-----P-SNDH----------N--PCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSD 155 (302)
Q Consensus 94 ~~~~-----~-~~~~----------~--~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~ 155 (302)
.... . ...+ . .-.++++....+ ..+.++...+..+..+ .++++||||.|+.+-...
T Consensus 254 ~~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~-~t~~~i~~~~r~~~~~-----~~~~~vvIDylql~~~~~ 327 (444)
T PRK05595 254 ANVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAG-VSVMEMRSKCRRLKIE-----HGIDMILIDYLQLMSGGK 327 (444)
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHh-----cCCCEEEEeHHHhccCCC
Confidence 1000 0 0000 0 012455544332 1233344444444432 468999999998753111
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC-----Cchh
Q 022155 156 FDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL-----GIAW 230 (302)
Q Consensus 156 ~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-----G~~w 230 (302)
. ...|...+..+++.||.||++++|+||++.|+........ ...|.+ .-.+
T Consensus 328 ---~---~~~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~------------------~~rP~lsdlr~Sg~I 383 (444)
T PRK05595 328 ---G---SESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRA------------------DHRPMLSDLRESGSI 383 (444)
T ss_pred ---C---CccHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccC------------------CCCCchhhhhhhccc
Confidence 1 1235556789999999999999999999999987654210 112222 1335
Q ss_pred hhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEE
Q 022155 231 ANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEI 292 (302)
Q Consensus 231 ~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I 292 (302)
.+-+|..++|.|.... .++. .. ...-.+.|.|.+..|...+.|.-
T Consensus 384 eq~AD~vl~l~r~~~~-~~~~-~~---------------~~~~e~iv~K~R~G~~g~~~~~~ 428 (444)
T PRK05595 384 EQDADVVMFLYRDEYY-NKET-ED---------------KNVAECIIAKQRNGPTGTVKLAW 428 (444)
T ss_pred ccCCCEEEEEeccccc-cccc-CC---------------CCceEEEEEccCCCCCceEEEEE
Confidence 5667899999986431 0110 00 12347778899888766655443
No 51
>PRK05636 replicative DNA helicase; Provisional
Probab=99.73 E-value=2.1e-16 Score=149.87 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=139.2
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH--HHHHHHHH
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM--RRLHQLSH 94 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~--~rl~~i~~ 94 (302)
...++||++.||+++ ||+.+|+++.|.|.||+|||+|++++|.+++. ..|. +|+||+.|.+-.. .|+.....
T Consensus 245 ~~Gi~TG~~~LD~~t-~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~--~~g~---~v~~fSlEMs~~ql~~R~ls~~s 318 (505)
T PRK05636 245 ATGIPTGFKDLDDLT-NGLRGGQMIIVAARPGVGKSTLALDFMRSASI--KHNK---ASVIFSLEMSKSEIVMRLLSAEA 318 (505)
T ss_pred CCceecChHHHhhhc-CCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH--hCCC---eEEEEEeeCCHHHHHHHHHHHhc
Confidence 467999999999986 79999999999999999999999999988753 2343 7999998865321 22211110
Q ss_pred H-----hCC--CCCC---------CCC--CcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhh
Q 022155 95 T-----FRP--SNDH---------NPC--DYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRS 154 (302)
Q Consensus 95 ~-----~~~--~~~~---------~~l--~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~ 154 (302)
. +.. ...+ ..+ .++++.... +..++. ..++.+..+ .++++||||.|+.+-..
T Consensus 319 ~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~---~~~r~~~~~-----~~~~lvvIDYLql~~~~ 390 (505)
T PRK05636 319 EVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIR---SKARRLKQK-----HDLKLIVVDYLQLMSSG 390 (505)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH---HHHHHHHHh-----cCCCEEEEcchHhcCCC
Confidence 0 000 0000 001 245554433 333433 344443332 46899999999975311
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC-----Cch
Q 022155 155 DFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL-----GIA 229 (302)
Q Consensus 155 ~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-----G~~ 229 (302)
. . ...|.+.+..+++.||.||++++|+||++.|+....... ...+|.+ .-.
T Consensus 391 ~---~---~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r------------------~dkrP~lsDLreSG~ 446 (505)
T PRK05636 391 K---R---VESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESR------------------TDKRPQLADLRESGS 446 (505)
T ss_pred C---C---CCcHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccc------------------CCCCCcHHHHhhccc
Confidence 1 1 123555689999999999999999999999998765421 1122332 234
Q ss_pred hhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeE
Q 022155 230 WANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEF 290 (302)
Q Consensus 230 w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F 290 (302)
+.+-+|..++|.|.+.. ..+. .. ...-.+-|.|.+..|...+.+
T Consensus 447 IEqdAD~vl~l~R~~~y-~~~~-~~---------------~g~~elivaK~RnG~~Gtv~l 490 (505)
T PRK05636 447 LEQDADMVMLLYRPDSQ-DKDD-ER---------------AGEADIILAKHRGGPIDTVQV 490 (505)
T ss_pred ccccCCEEEEEeccccc-CCcc-CC---------------CCceEEEEecCCCCCCceEEE
Confidence 66778999999986431 0010 00 123467778999887665443
No 52
>PRK09165 replicative DNA helicase; Provisional
Probab=99.73 E-value=1.1e-16 Score=152.17 Aligned_cols=196 Identities=18% Similarity=0.243 Sum_probs=126.5
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCC------------cCCCCCCeEEEEeCCCC
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPS------------SHGGLSASSLYLHTEFP 83 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~------------~~gg~~~~vlyid~e~~ 83 (302)
....++||++.||.++ ||+.+|+++.|.|+||+|||+|++++|.+++... ..|. +|+||+.|.+
T Consensus 196 ~~~gi~TG~~~LD~~~-gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~---~vl~fSlEMs 271 (497)
T PRK09165 196 HLSGISTGLRDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGG---VVGFFSLEMS 271 (497)
T ss_pred CCCcccCChHHHhhhc-CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCC---eEEEEeCcCC
Confidence 3568999999999998 6899999999999999999999999998875210 0133 8999999965
Q ss_pred CCH--HHHHHHHHHhCC--CCCCC--------------CC--CcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCee
Q 022155 84 FPM--RRLHQLSHTFRP--SNDHN--------------PC--DYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIR 141 (302)
Q Consensus 84 ~~~--~rl~~i~~~~~~--~~~~~--------------~l--~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~ 141 (302)
... .|+......... ..... .+ .++++.... +..++ ...+..+..+ .+++
T Consensus 272 ~~ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i---~~~ir~l~~~-----~~~~ 343 (497)
T PRK09165 272 AEQLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQL---RARARRLKRQ-----HGLD 343 (497)
T ss_pred HHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHH---HHHHHHHHHh-----cCCC
Confidence 322 222111111100 00000 00 134554332 33443 3444444332 5689
Q ss_pred EEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCC
Q 022155 142 LIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRP 221 (302)
Q Consensus 142 lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
+||||+|+.+-....... ..|.+.+..+++.||.||++++|+||++.|+........ .
T Consensus 344 lvvIDyLqli~~~~~~~~----~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~------------------~ 401 (497)
T PRK09165 344 LLVVDYLQLIRGSSKRSS----DNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRD------------------D 401 (497)
T ss_pred EEEEcchHhccCCCCCCC----CchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccC------------------C
Confidence 999999997642211001 235556899999999999999999999999987654211 1
Q ss_pred ccccC-----CchhhhhcceEEEEEEecC
Q 022155 222 ICPAL-----GIAWANCVNSRLFLSRNED 245 (302)
Q Consensus 222 ~~p~l-----G~~w~~~~~~rl~l~~~~~ 245 (302)
..|.+ .-++..-+|..++|.|.+.
T Consensus 402 krP~lsDLr~Sg~IEqdAD~v~~l~R~~~ 430 (497)
T PRK09165 402 KRPQLSDLRESGSIEQDADVVMFVYREEY 430 (497)
T ss_pred CCCchhhhhhccchhccCCEEEEEeehhh
Confidence 12222 2456777899999988643
No 53
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.72 E-value=4.7e-18 Score=142.64 Aligned_cols=168 Identities=25% Similarity=0.320 Sum_probs=89.6
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcC-C---CCCCeEEEEeCCCCCCH--HHHH
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSH-G---GLSASSLYLHTEFPFPM--RRLH 90 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~-g---g~~~~vlyid~e~~~~~--~rl~ 90 (302)
...++++.+.+|.++.|++++|+++.|+|++|+|||+++++++..++..... | ....+|+||++|.+... +|+.
T Consensus 11 ~~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~ 90 (193)
T PF13481_consen 11 FEDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLR 90 (193)
T ss_dssp --HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHH
T ss_pred hhhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHH
Confidence 3448899999999999999999999999999999999999999998621100 0 02348999999987422 4455
Q ss_pred HHHHHhCCCCCCCCC-----CcEEEEeCCCHHH-HHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHH
Q 022155 91 QLSHTFRPSNDHNPC-----DYIFVQSVHSVDQ-LLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLK 164 (302)
Q Consensus 91 ~i~~~~~~~~~~~~l-----~~i~~~~~~~~~~-l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~ 164 (302)
.+............. ..+.+........ ....+.++.+.+.. ..++++||||+++.+..... + +
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~lvviD~l~~~~~~~~-~---~-- 160 (193)
T PF13481_consen 91 ALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKE----LYGPDLVVIDPLQSLHDGDE-N---S-- 160 (193)
T ss_dssp HHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT--------SEEEEE-GGGG--S-T-T------
T ss_pred HHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhh----cCCCcEEEEcCHHHHhcCCC-C---C--
Confidence 444322100000000 1222222111111 22344555666543 24679999999999886521 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 165 KRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 165 ~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
... +.+++..|+++++++|++|++++|...
T Consensus 161 -~~~-~~~~~~~l~~la~~~~~~vi~v~H~~K 190 (193)
T PF13481_consen 161 -NSA-VAQLMQELKRLAKEYGVAVILVHHTNK 190 (193)
T ss_dssp -HHH-HHHHHHHHHHHHHHH--EEEEEEEE--
T ss_pred -HHH-HHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 111 368899999999999999999999864
No 54
>PRK07004 replicative DNA helicase; Provisional
Probab=99.72 E-value=3.6e-16 Score=147.34 Aligned_cols=222 Identities=14% Similarity=0.191 Sum_probs=140.3
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHh
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTF 96 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~ 96 (302)
...++||++.||+++ ||+++|+++.|.|.||+|||+|+++++.++++ ..|. +|+|++.|.+-.. -..++....
T Consensus 193 ~~gi~TG~~~LD~~t-~G~~~g~liviaarpg~GKT~~al~ia~~~a~--~~~~---~v~~fSlEM~~~q-l~~R~la~~ 265 (460)
T PRK07004 193 VTGTPTGFVDLDRMT-SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAV--EYGL---PVAVFSMEMPGTQ-LAMRMLGSV 265 (460)
T ss_pred CCCccCCcHHhcccc-cCCCCCceEEEEeCCCCCccHHHHHHHHHHHH--HcCC---eEEEEeCCCCHHH-HHHHHHHhh
Confidence 468999999999997 59999999999999999999999999988753 2344 8999999865321 112222111
Q ss_pred CC---------CCCC----------CCC--CcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhc
Q 022155 97 RP---------SNDH----------NPC--DYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSD 155 (302)
Q Consensus 97 ~~---------~~~~----------~~l--~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~ 155 (302)
.. ...+ ..+ .++++....+. .+.++...+..+..+ ..++++||||.++.+-...
T Consensus 266 ~~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~-~~~~i~~~~r~l~~~----~~~~~lviIDYLql~~~~~ 340 (460)
T PRK07004 266 GRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGL-NPMELRSRARRLARQ----CGKLGLIIIDYLQLMSGSS 340 (460)
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC-CHHHHHHHHHHHHHh----CCCCCEEEEChhhhccCCC
Confidence 10 0000 001 23555443321 122333344444332 2357999999998864211
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC-----Cchh
Q 022155 156 FDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL-----GIAW 230 (302)
Q Consensus 156 ~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-----G~~w 230 (302)
.. ..|.+.+..+++.||.||++++|+||++.|+........ ...|.+ .-++
T Consensus 341 -~~-----~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~------------------~krP~lsDLreSg~I 396 (460)
T PRK07004 341 -QG-----ENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRP------------------NKRPVMSDLRESGAI 396 (460)
T ss_pred -CC-----CcHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccC------------------CCCCChHHHhcchhh
Confidence 11 235666899999999999999999999999987654321 112222 2457
Q ss_pred hhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEE
Q 022155 231 ANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFE 291 (302)
Q Consensus 231 ~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~ 291 (302)
..-+|..++|.|.+... .+ . .+ ...-.+.|.|.+..|...+.+.
T Consensus 397 eqdAD~v~~l~R~~~y~-~~-~----------~~-----~g~~e~ivaKnR~G~~G~v~l~ 440 (460)
T PRK07004 397 EQDADVILFIYRDEVYN-PD-S----------PD-----KGTAEIIIGKQRNGPIGPVRLT 440 (460)
T ss_pred hhcCCEEEEeccccccC-CC-c----------CC-----CCceEEEEEccCCCCCceEEEE
Confidence 78889999999865310 00 0 00 1233567779988876654433
No 55
>PRK08006 replicative DNA helicase; Provisional
Probab=99.72 E-value=6.3e-16 Score=145.75 Aligned_cols=219 Identities=15% Similarity=0.220 Sum_probs=139.7
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH-HHHHHH
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL-HQLSHT 95 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl-~~i~~~ 95 (302)
...++||++.||+++ ||+.+|+++.|.|.||.|||+|++++|.+++. ..|. +|+||+.|.+ .+.+ .++...
T Consensus 204 ~~Gi~TG~~~LD~~~-~Gl~~G~LiiIaarPgmGKTafalnia~~~a~--~~g~---~V~~fSlEM~--~~ql~~Rlla~ 275 (471)
T PRK08006 204 VTGVNTGYDDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAM--LQDK---PVLIFSLEMP--GEQIMMRMLAS 275 (471)
T ss_pred CCcccCCCHHHHHhh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hcCC---eEEEEeccCC--HHHHHHHHHHH
Confidence 467999999999987 79999999999999999999999999999753 2344 7999999954 3222 222211
Q ss_pred hCC----------CCCC----------CC--CCcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhh
Q 022155 96 FRP----------SNDH----------NP--CDYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAAL 151 (302)
Q Consensus 96 ~~~----------~~~~----------~~--l~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~ 151 (302)
... ...+ .. -.++++.+.. +..+ +...+..+..+ ..++++||||.|+.+
T Consensus 276 ~~~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~---i~~~~r~~~~~----~~~~~lvvIDYLqli 348 (471)
T PRK08006 276 LSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTE---VRSRARRIFRE----HGGLSLIMIDYLQLM 348 (471)
T ss_pred hcCCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHH---HHHHHHHHHHh----cCCCCEEEEccHHHc
Confidence 110 0000 01 1245554432 3444 33444444433 236899999999975
Q ss_pred hhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC-----
Q 022155 152 FRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL----- 226 (302)
Q Consensus 152 ~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l----- 226 (302)
-.... . ..|...+..+++.||.||++++|+||++.|+........ ...|.+
T Consensus 349 ~~~~~-~-----~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~------------------dkrP~lsDLre 404 (471)
T PRK08006 349 RVPSL-S-----DNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRA------------------DKRPVNSDLRE 404 (471)
T ss_pred cCCCC-C-----CCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccC------------------CCCCchhhhhh
Confidence 32211 1 234455789999999999999999999999987654311 122322
Q ss_pred CchhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEE
Q 022155 227 GIAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFE 291 (302)
Q Consensus 227 G~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~ 291 (302)
.-++..-+|..++|.|.+... ++... ...-.+.|.|.+..|...+.|.
T Consensus 405 SG~IEqdAD~v~~l~R~~~y~--~~~~~---------------~g~~elivaKnR~G~~G~v~l~ 452 (471)
T PRK08006 405 SGSIEQDADLIMFIYRDEVYH--ENSDL---------------KGIAEIIIGKQRNGPIGTVRLT 452 (471)
T ss_pred cCcccccCCEEEEEecccccc--cccCC---------------CCceEEEEecccCCCCceEEEE
Confidence 234667788999999865311 00000 1234667789988776655443
No 56
>PRK06904 replicative DNA helicase; Validated
Probab=99.71 E-value=7.9e-16 Score=145.24 Aligned_cols=221 Identities=15% Similarity=0.243 Sum_probs=140.0
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH-HHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL-HQLSH 94 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl-~~i~~ 94 (302)
....++||++.||+++ ||+.+|+++.|.|.||+|||+|++++|.+++. ..|. +|+||+.|.+ .+.+ .++..
T Consensus 200 ~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPg~GKTafalnia~~~a~--~~g~---~Vl~fSlEMs--~~ql~~Rlla 271 (472)
T PRK06904 200 GVTGVTTGFTDLDKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAM--ASEK---PVLVFSLEMP--AEQIMMRMLA 271 (472)
T ss_pred CCCCccCChHHHHHHH-hccCCCcEEEEEeCCCCChHHHHHHHHHHHHH--hcCC---eEEEEeccCC--HHHHHHHHHH
Confidence 4568999999999997 79999999999999999999999999998753 2344 8999999954 2222 22221
Q ss_pred HhC--------CC-C--CC---------C---CCCcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechh
Q 022155 95 TFR--------PS-N--DH---------N---PCDYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIA 149 (302)
Q Consensus 95 ~~~--------~~-~--~~---------~---~l~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~ 149 (302)
... .. . .+ . ...++++.... +..++ ...+..+... ..++++||||.|+
T Consensus 272 ~~s~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i---~~~~r~~~~~----~~~~~lvvIDYLq 344 (472)
T PRK06904 272 SLSRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTEL---RSRARRVYRE----NGGLSLIMVDYLQ 344 (472)
T ss_pred hhCCCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHH---HHHHHHHHHh----CCCCCEEEEecHH
Confidence 111 00 0 00 0 12246665433 33443 3344444432 2357999999998
Q ss_pred hhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC---
Q 022155 150 ALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL--- 226 (302)
Q Consensus 150 ~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l--- 226 (302)
-+-..... ..|...+..+++.||.||++++|+||++.|+........ ...|.+
T Consensus 345 li~~~~~~------~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~------------------~krP~lsDL 400 (472)
T PRK06904 345 LMRAPGFE------DNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRG------------------DKRPVNSDL 400 (472)
T ss_pred hcCCCCCC------CcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccC------------------CCCCchHHH
Confidence 75322111 235555789999999999999999999999987654211 122322
Q ss_pred --CchhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEE
Q 022155 227 --GIAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFE 291 (302)
Q Consensus 227 --G~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~ 291 (302)
.-.+..-+|..++|.|.+... .+.. . ....-.+.|.|.+..|...+.|.
T Consensus 401 reSG~IEqdAD~v~~l~R~~~y~-~~~~-----------~----~~~~~elivaKnR~G~~G~v~l~ 451 (472)
T PRK06904 401 RESGSIEQDADLIMFIYRDEVYN-ETTE-----------D----NKGVAEIIIGKQRNGPIGRVRLA 451 (472)
T ss_pred hhcCccccCCcEEEEEecccccc-Cccc-----------c----CCCceEEEEeccCCCCCceEEEE
Confidence 123456678899998864310 0100 0 01234677789988876655443
No 57
>PRK08506 replicative DNA helicase; Provisional
Probab=99.71 E-value=2.2e-16 Score=149.30 Aligned_cols=189 Identities=20% Similarity=0.290 Sum_probs=125.6
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH-HHHHHH
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL-HQLSHT 95 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl-~~i~~~ 95 (302)
...++||++.||.++ ||+.+|+++.|.|+||+|||+|+++++.+++ ..|. +|+||+.|.+ .+.+ .++...
T Consensus 172 ~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~---~~g~---~V~~fSlEMs--~~ql~~Rlla~ 242 (472)
T PRK08506 172 IIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKAL---NQDK---GVAFFSLEMP--AEQLMLRMLSA 242 (472)
T ss_pred CCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHH---hcCC---cEEEEeCcCC--HHHHHHHHHHH
Confidence 567999999999997 7999999999999999999999999999975 4454 8999999954 3222 222211
Q ss_pred hCCC----------CCC----------C-CCCcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 96 FRPS----------NDH----------N-PCDYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 96 ~~~~----------~~~----------~-~l~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
.... ..+ . .-.++++.... +..++.+ .++.+..+ ..++++||||+++.+-
T Consensus 243 ~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~---~~r~l~~~----~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 243 KTSIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRA---QLRKLKSQ----HPEIGLAVIDYLQLMS 315 (472)
T ss_pred hcCCCHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHH---HHHHHHHh----CCCCCEEEEcChhhcc
Confidence 1100 000 0 01245554432 3444443 44433332 2358999999998653
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC-----C
Q 022155 153 RSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL-----G 227 (302)
Q Consensus 153 ~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-----G 227 (302)
... . ...|...+..+++.||.||++++|+||++.|+........ ...|.+ .
T Consensus 316 ~~~---~---~~~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~------------------~krP~lsDLreS 371 (472)
T PRK08506 316 GSG---N---FKDRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRA------------------DKRPMLSDLRES 371 (472)
T ss_pred CCC---C---CCCHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhcc------------------CCCCChHHhhcc
Confidence 211 0 1224455789999999999999999999999987653211 112222 2
Q ss_pred chhhhhcceEEEEEEecC
Q 022155 228 IAWANCVNSRLFLSRNED 245 (302)
Q Consensus 228 ~~w~~~~~~rl~l~~~~~ 245 (302)
-++..-+|..++|.|.+.
T Consensus 372 g~IeqdAD~vl~l~R~~~ 389 (472)
T PRK08506 372 GAIEQDADIILFVYRDDV 389 (472)
T ss_pred hhhhhcCCEEEEEecccc
Confidence 447788899999999643
No 58
>PRK05973 replicative DNA helicase; Provisional
Probab=99.71 E-value=3.2e-16 Score=134.34 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=94.0
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCC
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCD 106 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~ 106 (302)
.|++ .||+++|.++.|.|+||+|||+|+++++.+.+ ..|. +|+||+.|.+. +.+.+-...+. ...+...+
T Consensus 54 ~~~l-~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge---~vlyfSlEes~--~~i~~R~~s~g-~d~~~~~~ 123 (237)
T PRK05973 54 AEEL-FSQLKPGDLVLLGARPGHGKTLLGLELAVEAM---KSGR---TGVFFTLEYTE--QDVRDRLRALG-ADRAQFAD 123 (237)
T ss_pred HHHh-cCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCC---eEEEEEEeCCH--HHHHHHHHHcC-CChHHhcc
Confidence 7775 58999999999999999999999999999886 4565 89999999763 22222222222 11111222
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCc
Q 022155 107 YIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGL 186 (302)
Q Consensus 107 ~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~ 186 (302)
.+.+... +......++.++ ..+ .+.++||||+|+.+.... . + . .+..++..|+.+++++++
T Consensus 124 ~~~~d~~-d~~~~~~ii~~l---~~~-----~~~~lVVIDsLq~l~~~~-~----~-~----el~~~~~~Lk~~Ak~~gi 184 (237)
T PRK05973 124 LFEFDTS-DAICADYIIARL---ASA-----PRGTLVVIDYLQLLDQRR-E----K-P----DLSVQVRALKSFARERGL 184 (237)
T ss_pred ceEeecC-CCCCHHHHHHHH---HHh-----hCCCEEEEEcHHHHhhcc-c----c-h----hHHHHHHHHHHHHHhCCC
Confidence 2222221 111112223322 222 345999999999864211 1 0 1 135667889999999999
Q ss_pred EEEEEecccccCCC
Q 022155 187 AVLVTNQVVDLMEP 200 (302)
Q Consensus 187 ~viv~n~~~~~~~~ 200 (302)
+||+++|+....+.
T Consensus 185 tvIl~sQl~r~~e~ 198 (237)
T PRK05973 185 IIVFISQIDRSFDP 198 (237)
T ss_pred eEEEEecCcccccc
Confidence 99999999887654
No 59
>PRK08840 replicative DNA helicase; Provisional
Probab=99.71 E-value=1.8e-15 Score=142.36 Aligned_cols=223 Identities=14% Similarity=0.218 Sum_probs=141.3
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH-HHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL-HQLSH 94 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl-~~i~~ 94 (302)
....++||++.||.++ +|+.+|+++.|.|.||+|||+|++++|.+++. ..|. .|+||+.|.+ .+.+ ..+..
T Consensus 196 ~~~gi~TG~~~LD~~~-~G~~~g~LiviaarPg~GKTafalnia~~~a~--~~~~---~v~~fSlEMs--~~ql~~Rlla 267 (464)
T PRK08840 196 GVTGVDTGFTDLNKKT-AGLQGSDLIIVAARPSMGKTTFAMNLCENAAM--DQDK---PVLIFSLEMP--AEQLMMRMLA 267 (464)
T ss_pred CCCCcCCCcHHHHHhh-cCCCCCceEEEEeCCCCchHHHHHHHHHHHHH--hCCC---eEEEEeccCC--HHHHHHHHHH
Confidence 3567999999999997 68999999999999999999999999999853 2344 7999999954 3222 12221
Q ss_pred HhCCC----------CCC---------C-C--CCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 95 TFRPS----------NDH---------N-P--CDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 95 ~~~~~----------~~~---------~-~--l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
..... ..+ . . -.++++....+. .+.++...+..+..+ ..++++||||.|+.+-
T Consensus 268 ~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~-ti~~i~~~~r~~~~~----~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 268 SLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGL-TPTEVRSRARRIARE----HGGLSMIMVDYLQLMR 342 (464)
T ss_pred hhCCCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCC-CHHHHHHHHHHHHHh----cCCCCEEEEccHHhcC
Confidence 11100 000 0 1 124565543321 122334444444332 2358999999999753
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC-----C
Q 022155 153 RSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL-----G 227 (302)
Q Consensus 153 ~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-----G 227 (302)
... .. ..|.+.+..+++.||.||++++|+||++.|+....... ....|.+ .
T Consensus 343 ~~~---~~---~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r------------------~~krP~lsDLreS 398 (464)
T PRK08840 343 VPA---LS---DNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQR------------------ADKRPVNSDLRES 398 (464)
T ss_pred CCC---CC---CchHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccc------------------CCCCCchHhhhhc
Confidence 111 11 23555678999999999999999999999998765431 1122322 2
Q ss_pred chhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEE
Q 022155 228 IAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEI 292 (302)
Q Consensus 228 ~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I 292 (302)
-.+..-+|..++|.|.+... .+ ... ...-.+.|.|.+..|...+.|..
T Consensus 399 G~IEqdAD~v~~l~R~~~y~-~~-~~~---------------~~~~elivaKnR~G~~G~v~l~f 446 (464)
T PRK08840 399 GSIEQDADLIMFIYRDEVYN-PD-SPL---------------KGTAEIIIGKQRNGPIGSVRLTF 446 (464)
T ss_pred ccccccCCEEEEEecccccC-CC-cCC---------------CCceEEEEecccCCCCceEEEEE
Confidence 34667789999999865411 00 000 12345777798888766555443
No 60
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=3.6e-15 Score=123.00 Aligned_cols=211 Identities=19% Similarity=0.260 Sum_probs=139.0
Q ss_pred ccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCC
Q 022155 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRP 98 (302)
Q Consensus 19 ~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~ 98 (302)
-+++|.+.||+-|+||+|.|+++.|-|+.|+|||.|+++++.... ..|. ++.|++||.+. .+.+.+|-..--.
T Consensus 9 ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L---~~g~---~v~yvsTe~T~-refi~qm~sl~yd 81 (235)
T COG2874 9 IIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFL---MNGY---RVTYVSTELTV-REFIKQMESLSYD 81 (235)
T ss_pred hccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHH---hCCc---eEEEEEechhH-HHHHHHHHhcCCC
Confidence 489999999999999999999999999999999999999999885 5565 89999999652 2444444322101
Q ss_pred CCCCCCCCcEEEEeC------CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHH
Q 022155 99 SNDHNPCDYIFVQSV------HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFK 172 (302)
Q Consensus 99 ~~~~~~l~~i~~~~~------~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~ 172 (302)
..+.-...++.+... .+...-..+|+.+.+.++. ..-++|||||++++...+ +..+ +..
T Consensus 82 v~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~-----~~~dViIIDSls~~~~~~------~~~~----vl~ 146 (235)
T COG2874 82 VSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKR-----WEKDVIIIDSLSAFATYD------SEDA----VLN 146 (235)
T ss_pred chHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHh-----hcCCEEEEecccHHhhcc------cHHH----HHH
Confidence 111112233334332 2233333444444444432 344999999999977543 1111 457
Q ss_pred HHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccc
Q 022155 173 ISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQ 252 (302)
Q Consensus 173 l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~ 252 (302)
++..+++|+. .|-+||+|-|...--++ .. .-..+.+++-+.|+...- +
T Consensus 147 fm~~~r~l~d-~gKvIilTvhp~~l~e~--------------------~~-----~rirs~~d~~l~L~~~~~-----G- 194 (235)
T COG2874 147 FMTFLRKLSD-LGKVIILTVHPSALDED--------------------VL-----TRIRSACDVYLRLRLEEL-----G- 194 (235)
T ss_pred HHHHHHHHHh-CCCEEEEEeChhhcCHH--------------------HH-----HHHHHhhheeEEEEhhhh-----C-
Confidence 8899999996 47788888775431111 01 123455677777766543 1
Q ss_pred cccCCCCCCCCCCcccccceEEEEEEECCCCC---CceeeEEEecC-cccc
Q 022155 253 MVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA---DTSCEFEITRE-GVFG 299 (302)
Q Consensus 253 ~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~---~~~~~F~I~~~-Gi~~ 299 (302)
| ..++.+.++|-++.+ ...+.|+|.++ ||..
T Consensus 195 ---g-------------~~~~~~~i~K~~ga~~s~~~~I~F~V~P~~Glkv 229 (235)
T COG2874 195 ---G-------------DLIKVLEIVKYRGARKSFQNIISFRVEPGFGLKV 229 (235)
T ss_pred ---C-------------eeeEEEEEeeecCchhhcCCceeEEecCCCceEE
Confidence 1 578899999988885 45799999974 7753
No 61
>PRK06749 replicative DNA helicase; Provisional
Probab=99.66 E-value=1.2e-14 Score=135.73 Aligned_cols=221 Identities=15% Similarity=0.158 Sum_probs=138.3
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHT 95 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~ 95 (302)
....++||++.||+++ ||+.+|+++.|.|.||.|||+|+++++.+++ ..|. +|+||+.|.+-.. -..++...
T Consensus 165 ~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPgmGKTafal~ia~~~a---~~g~---~v~~fSlEMs~~q-l~~R~ls~ 236 (428)
T PRK06749 165 EITGIETGYTSLNKMT-CGLQEGDFVVLGARPSMGKTAFALNVGLHAA---KSGA---AVGLFSLEMSSKQ-LLKRMASC 236 (428)
T ss_pred CCCCccCCcHHHHHHh-CCCCCCcEEEEEeCCCCCchHHHHHHHHHHH---hcCC---CEEEEEeeCCHHH-HHHHHHHh
Confidence 3567999999999986 6899999999999999999999999999986 3454 7999998864221 11122221
Q ss_pred hC--------CC---CCC----------CCC--CcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCC-CeeEEEEechh
Q 022155 96 FR--------PS---NDH----------NPC--DYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRL-PIRLIVIDSIA 149 (302)
Q Consensus 96 ~~--------~~---~~~----------~~l--~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~-~~~lvVIDsi~ 149 (302)
.. .. ..+ ..+ .++++.+.. +..++. ..++.+... .. ...+||||.++
T Consensus 237 ~~~i~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~---~~~r~~~~~----~~~~~~lvvIDyLq 309 (428)
T PRK06749 237 VGEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIW---MQTRKLKRK----HGDKKILIIVDYLQ 309 (428)
T ss_pred ccCCCHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH---HHHHHHHHh----cCCCCcEEEEeChh
Confidence 10 00 000 001 135554433 233433 333333332 11 14599999998
Q ss_pred hhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC---
Q 022155 150 ALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL--- 226 (302)
Q Consensus 150 ~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l--- 226 (302)
.+-... ... ..|...+..+++.||.||++++|+||++.|+........ ...|.+
T Consensus 310 li~~~~-~~~----~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~------------------~krP~lsDL 366 (428)
T PRK06749 310 LITGDP-KHK----GNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQ------------------DKRPLLSDL 366 (428)
T ss_pred hcCCCC-CCC----CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccC------------------CCCCchHhh
Confidence 753210 000 235556889999999999999999999999987654211 122322
Q ss_pred --CchhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEE
Q 022155 227 --GIAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFE 291 (302)
Q Consensus 227 --G~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~ 291 (302)
.-++..-+|..++|.|.+.. ..+ . . . ...-.+.|.|.+..|...+.+.
T Consensus 367 R~SG~IEqdAD~vl~l~R~~~y-~~~-~----------~----~-~~~~eliiaKnR~G~~G~v~~~ 416 (428)
T PRK06749 367 RETGQIEQDADVIMLMYREDYY-DKE-T----------M----Q-KEMTEIHVAKHRNGPVGSFKLR 416 (428)
T ss_pred hhcccccccCCEEEEEeecccc-ccc-c----------c----C-CCceEEEEecCCCCCCceEEEE
Confidence 13355668999999986531 000 0 0 0 1245677889998776655444
No 62
>PRK07773 replicative DNA helicase; Validated
Probab=99.63 E-value=1.9e-15 Score=153.06 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=112.0
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHT 95 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~ 95 (302)
....++||++.||.++ ||+++|+++.|+|+||+|||+|++++|.+++. ..+. +|+||+.|.+-.. -+..+...
T Consensus 196 ~~~Gi~TG~~~LD~l~-~Gl~~G~livIagrPg~GKT~fal~ia~~~a~--~~~~---~V~~fSlEms~~q-l~~R~~s~ 268 (886)
T PRK07773 196 LARGVPTGFTELDAMT-NGLHPGQLIIVAARPSMGKTTFGLDFARNCAI--RHRL---AVAIFSLEMSKEQ-LVMRLLSA 268 (886)
T ss_pred CCCCccCChhHhcccc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHH--hcCC---eEEEEecCCCHHH-HHHHHHHH
Confidence 3568999999999997 89999999999999999999999999999863 2233 8999999865322 11122211
Q ss_pred hCCC----------CCC---------CCC--CcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhh
Q 022155 96 FRPS----------NDH---------NPC--DYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRS 154 (302)
Q Consensus 96 ~~~~----------~~~---------~~l--~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~ 154 (302)
.... ... ..+ .++++....+ -.+.++...+..+..+ .++++||||+++.+-..
T Consensus 269 ~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~-~~i~~i~~~~r~~~~~-----~~~~lvvIDyLql~~~~ 342 (886)
T PRK07773 269 EAKIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPN-LTVMEIRAKARRLRQE-----ANLGLIVVDYLQLMTSG 342 (886)
T ss_pred hcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHh-----cCCCEEEEcchhhcCCC
Confidence 0000 000 000 2345543322 1233444455555443 46899999999975321
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCC
Q 022155 155 DFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLME 199 (302)
Q Consensus 155 ~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~ 199 (302)
.. ...|.+.+.++++.||.||++++|+||+++|+.....
T Consensus 343 ---~~---~~~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e 381 (886)
T PRK07773 343 ---KK---YENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVE 381 (886)
T ss_pred ---CC---CCCHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchh
Confidence 11 1245666899999999999999999999999987654
No 63
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.60 E-value=1.1e-13 Score=115.45 Aligned_cols=178 Identities=24% Similarity=0.322 Sum_probs=105.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCC-CCCCcEEEEeCC----
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDH-NPCDYIFVQSVH---- 114 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~-~~l~~i~~~~~~---- 114 (302)
++.|.||||+|||+|+++++...+ ..|. +|+|+++|.+ .+.+.+.+.++...... .....+.+....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~---~v~~~s~e~~--~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~ 72 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGE---PGLYVTLEES--PEELIENAESLGWDLERLEDEGLLAIVDADPDEI 72 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCC---cEEEEECCCC--HHHHHHHHHHcCCChHHHHhcCCeEEEecCcccc
Confidence 478999999999999999999875 4565 8999999865 33443333333211100 011122332221
Q ss_pred CHHHH---HHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Q 022155 115 SVDQL---LDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVT 191 (302)
Q Consensus 115 ~~~~l---~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~ 191 (302)
+..+. .+++..+...+.. .+++++|||++++++..+ ....+ ..+.+.++.+. +.++++|++
T Consensus 73 s~~~~~~~~~~~~~i~~~~~~-----~~~~~lviD~~~~~~~~~------~~~~~----~~i~~l~~~l~-~~g~tvi~v 136 (187)
T cd01124 73 GPAESSLRLELIQRLKDAIEE-----FKAKRVVIDSVSGLLLME------QSTAR----LEIRRLLFALK-RFGVTTLLT 136 (187)
T ss_pred chhhhhhhHHHHHHHHHHHHH-----hCCCEEEEeCcHHHhhcC------hHHHH----HHHHHHHHHHH-HCCCEEEEE
Confidence 11111 1334444444433 356999999999976421 11122 12333344433 459999999
Q ss_pred ecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccc
Q 022155 192 NQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRT 271 (302)
Q Consensus 192 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 271 (302)
+|....... +.....+.+.+|..+.|.+... + | ..
T Consensus 137 ~~~~~~~~~-----------------------~~~~~~~~~~aD~ii~l~~~~~-----~----~-------------~~ 171 (187)
T cd01124 137 SEQSGLEGT-----------------------GFGGGDVEYLVDGVIRLRLDEE-----G----G-------------RL 171 (187)
T ss_pred eccccCCCc-----------------------ccCcCceeEeeeEEEEEEEEcc-----C----C-------------EE
Confidence 997653211 1223456788899999988754 1 1 46
Q ss_pred eEEEEEEECCCCCCc
Q 022155 272 RRSLHVVFAPHLADT 286 (302)
Q Consensus 272 ~R~~~v~ks~~~~~~ 286 (302)
+|.++|+|.++.+++
T Consensus 172 ~r~l~i~K~R~~~~~ 186 (187)
T cd01124 172 RRSLSVVKMRGGPHD 186 (187)
T ss_pred EEEEEEEEccCCCCC
Confidence 889999999987653
No 64
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.58 E-value=1.5e-13 Score=119.36 Aligned_cols=172 Identities=23% Similarity=0.283 Sum_probs=107.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCC------CCCeEEEEeCCCCCC--HHHHHHHHHHhCCCCCCCCCCcEE
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGG------LSASSLYLHTEFPFP--MRRLHQLSHTFRPSNDHNPCDYIF 109 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg------~~~~vlyid~e~~~~--~~rl~~i~~~~~~~~~~~~l~~i~ 109 (302)
|.+..|+||+|+|||+|++++|.+++......| .+++|+|+++|.+.+ .+|+..+...+.... ..++++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~---~~~rl~ 77 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDD---AGDRLF 77 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcC---cccceE
Confidence 678999999999999999999998763222111 234899999998765 477888877653211 112222
Q ss_pred EE----------eCC---CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHH
Q 022155 110 VQ----------SVH---SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGM 176 (302)
Q Consensus 110 ~~----------~~~---~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~ 176 (302)
+. ... ....+. .+.+.+.. .++++||||+++.+.... .. +... ...++..
T Consensus 78 ~~~g~~~~l~~~~~~~~~~~~~~~----~l~~~~~~-----~~~~lvviDpl~~~~~~~-~~---d~~~----~~~~~~~ 140 (239)
T cd01125 78 IDSGRIQPISIAREGRIIVVPEFE----RIIEQLLI-----RRIDLVVIDPLVSFHGVS-EN---DNGA----MDAVIKA 140 (239)
T ss_pred EeccCCCceecccCCcccccHHHH----HHHHHHHh-----cCCCEEEECChHHhCCCC-cC---CHHH----HHHHHHH
Confidence 21 111 112222 22222211 356999999998863211 11 1122 3467888
Q ss_pred HHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecC
Q 022155 177 LKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245 (302)
Q Consensus 177 L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~ 245 (302)
|++++++++++||+++|......... .......+..+|...+++.+.|.+...
T Consensus 141 L~~~a~~~g~avl~v~H~~K~~~~~~----------------~~~~~~rGssal~~~~r~~~~l~~~~~ 193 (239)
T cd01125 141 LRRIAAQTGAAILLVHHVRKGSAKDG----------------DTQEAARGASALVDGARWVRALTRMTS 193 (239)
T ss_pred HHHHHHHhCCEEEEEeccCcccccCc----------------ccccccCcHHHHhcccceEEEEeeCCH
Confidence 99999999999999999875432110 011223345678888889999988754
No 65
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.54 E-value=8.2e-13 Score=121.57 Aligned_cols=229 Identities=18% Similarity=0.218 Sum_probs=146.4
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHH-HHHHH
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLH-QLSHT 95 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~-~i~~~ 95 (302)
...+|||.+.||.++ +|+.+|+++.+++.||.|||+||+++|.+++. ... .+|.+|+.|.+ .+.+. .+...
T Consensus 176 ~~Gi~tgf~~LD~~t-~G~~~~dLii~AaRP~mGKTafalnia~n~a~--~~~---~~v~iFSLEM~--~eql~~R~Ls~ 247 (435)
T COG0305 176 LIGVPTGFTDLDEIT-SGFRPGDLIIVAARPGMGKTALALNIALNAAA--DGR---KPVAIFSLEMS--EEQLVMRLLSS 247 (435)
T ss_pred CcccccCchhhHHHh-cCCccCCEEEEccCCCCChHHHHHHHHHHHHH--hcC---CCeEEEEccCC--HHHHHHHhhcc
Confidence 678999999999997 56999999999999999999999999999874 222 26899998864 22221 11111
Q ss_pred hCCCCCC-------------------CCC--CcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhh
Q 022155 96 FRPSNDH-------------------NPC--DYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRS 154 (302)
Q Consensus 96 ~~~~~~~-------------------~~l--~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~ 154 (302)
....... ..+ ..+++.+..+ -.+.++..+++.+-.+ .++++++||.++-+...
T Consensus 248 ~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~-~si~eir~~aRrlk~~-----~~l~~i~iDYLqLm~~~ 321 (435)
T COG0305 248 ESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPG-LTITEIRSKARRLKLK-----HNLGLIVIDYLQLMTGG 321 (435)
T ss_pred ccccchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCc-CCHHHHHHHHHHHHHh-----cCccEEEEEEEEeeccc
Confidence 1100000 000 1233333222 1133344445544443 56999999999986533
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhc
Q 022155 155 DFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCV 234 (302)
Q Consensus 155 ~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~ 234 (302)
.. ...|++.+..+.+.|+.||++.+++||...|+....+..... |+ + -+.++-++ +...-.
T Consensus 322 ~~------~~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dk---rP-----~---lSDLRESG--sIEQDA 382 (435)
T COG0305 322 KK------SENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDK---RP-----M---LSDLRESG--ALEQDA 382 (435)
T ss_pred cc------chhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhcccc---CC-----c---cccCccCC--chhhhC
Confidence 21 145788899999999999999999999999998876643110 00 0 01222232 233457
Q ss_pred ceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecC
Q 022155 235 NSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITRE 295 (302)
Q Consensus 235 ~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~ 295 (302)
+..+++.|.+... ++ . ++ ...-.+-|-|.++.|...+.+.....
T Consensus 383 D~VmflyRde~y~-~~-~----------~~-----~g~aeiIi~K~RnGp~GtV~l~f~~~ 426 (435)
T COG0305 383 DIVIFLHRDEAYL-KD-T----------PD-----RGEAEVIVAKNRNGPTGTVKLAFDPQ 426 (435)
T ss_pred CEEEEEechhhcc-CC-C----------CC-----CceEEEEEEeccCCCCceEEEEEecc
Confidence 8889998876521 11 0 00 14557777799999888777665543
No 66
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.48 E-value=1.2e-12 Score=106.05 Aligned_cols=164 Identities=20% Similarity=0.166 Sum_probs=97.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCC-HHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHS-VDQ 118 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~-~~~ 118 (302)
++.|+|+||+|||+++.+++...+ ..++ .++|++.+..+...+.. .. .+ ......+++.+..... ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~---~v~~~~~e~~~~~~~~~-~~-~~---~~~~~~~~~~~~~~~~~~~~ 69 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGG---KVVYVDIEEEIEELTER-LI-GE---SLKGALDNLIIVFATADDPA 69 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCC---EEEEEECCcchHHHHHH-Hh-hh---hhccccccEEEEEcCCCCCc
Confidence 478999999999999999999875 3455 89999999765432211 10 00 1112234444433322 111
Q ss_pred HHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccC
Q 022155 119 LLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198 (302)
Q Consensus 119 l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~ 198 (302)
............. ..+++++|||+++.+........ ......+...+..|...+++.++++|+++|.....
T Consensus 70 ~~~~~~~~~~~~~-----~~~~~~lviDe~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 70 AARLLSKAERLRE-----RGGDDLIILDELTRLVRALREIR----EGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHHHHHHHh-----CCCCEEEEEEcHHHHHHHHHHHH----hcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 1111112222222 35679999999999875432100 00011234566777777778899999999987644
Q ss_pred CCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEE
Q 022155 199 EPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSR 242 (302)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~ 242 (302)
...+ ..+.++..-.+.+++++.|.+
T Consensus 141 ~~~~-------------------~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 141 KGDP-------------------RLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred ccCc-------------------ccccCccceeeecceEEEEeC
Confidence 3211 113445566788888888864
No 67
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.31 E-value=1e-11 Score=108.28 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=98.0
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcC-C---CCCCeEEEEeCCCCCCH--HHHHHHHHHhCCCCCCCCCC
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSH-G---GLSASSLYLHTEFPFPM--RRLHQLSHTFRPSNDHNPCD 106 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~-g---g~~~~vlyid~e~~~~~--~rl~~i~~~~~~~~~~~~l~ 106 (302)
+-+..|-...|+|++|+|||+++++++...+.-... | -.+++|+|++.|..-+. +|++.+...++.... ...
T Consensus 84 ~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPa--dvr 161 (402)
T COG3598 84 EFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPA--DVR 161 (402)
T ss_pred HHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChH--hhh
Confidence 346788888999999999999999988776421111 1 01348999999975432 677777777653322 233
Q ss_pred cEEEEeCCC---HHHH--HHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHH
Q 022155 107 YIFVQSVHS---VDQL--LDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMA 181 (302)
Q Consensus 107 ~i~~~~~~~---~~~l--~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la 181 (302)
|+....... ..+. ..++.+.+..+.+ ..+++||||++.+++.++-.. +.+ +..+++.++++|
T Consensus 162 n~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q-----~rp~~vViDp~v~f~~G~s~s---~vq-----v~~fi~~~rkla 228 (402)
T COG3598 162 NMDLTDVSGAADESDVLSPKLYRRFEKILEQ-----KRPDFVVIDPFVAFYEGKSIS---DVQ-----VKEFIKKTRKLA 228 (402)
T ss_pred heeccccccCCCccccccHHHHHHHHHHHHH-----hCCCeEEEcchhhhcCCccch---hHH-----HHHHHHHHHHHH
Confidence 444422111 0011 1344555555544 345999999999988654111 112 568899999999
Q ss_pred HHcCcEEEEEeccccc
Q 022155 182 VGFGLAVLVTNQVVDL 197 (302)
Q Consensus 182 ~~~~~~viv~n~~~~~ 197 (302)
..++|+||+++|....
T Consensus 229 ~~l~caIiy~hHtsks 244 (402)
T COG3598 229 RNLECAIIYIHHTSKS 244 (402)
T ss_pred HhcCCeEEEEeccccc
Confidence 9999999999998643
No 68
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.07 E-value=3e-10 Score=95.74 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=60.9
Q ss_pred cccccCCCCCCccccCCh-hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CC
Q 022155 8 QNLLDNPLTTEKCTVGCP-IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PF 84 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~-~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~ 84 (302)
+.+++.+.....+ |.. .+|.+ +--+++|+++.|.||||+|||+|+..++... ++..| -++|++++ .+
T Consensus 6 ~~~I~vr~v~~~f--G~~~Ild~v-~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll--~P~~G-----eI~i~G~~i~~l 75 (263)
T COG1127 6 EPLIEVRGVTKSF--GDRVILDGV-DLDVPRGEILAILGGSGSGKSTLLRLILGLL--RPDKG-----EILIDGEDIPQL 75 (263)
T ss_pred cceEEEeeeeeec--CCEEEecCc-eeeecCCcEEEEECCCCcCHHHHHHHHhccC--CCCCC-----eEEEcCcchhcc
Confidence 4455554444333 433 45655 5679999999999999999999999998774 33444 48888776 34
Q ss_pred CHHHHHHHHHHhCC-------CCCCCCCCcEEE
Q 022155 85 PMRRLHQLSHTFRP-------SNDHNPCDYIFV 110 (302)
Q Consensus 85 ~~~rl~~i~~~~~~-------~~~~~~l~~i~~ 110 (302)
+.+++.++.+.+.- +..-++.+|+.+
T Consensus 76 s~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf 108 (263)
T COG1127 76 SEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108 (263)
T ss_pred CHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence 55566666655432 122356677765
No 69
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.00 E-value=2.2e-10 Score=103.24 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=45.4
Q ss_pred CCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 14 PLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 14 ~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+.....+. +...+|++ +--|++|+++.|.|||||||||++..||.... ..+ .-++++.+.
T Consensus 9 ~~v~k~yg-~~~av~~i-sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~----G~I~l~G~~ 68 (352)
T COG3842 9 RNVSKSFG-DFTAVDDI-SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSS----GEILLDGED 68 (352)
T ss_pred EeeeeecC-CeeEEecc-eeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCC----ceEEECCEE
Confidence 33333343 56678876 67899999999999999999999999998763 333 358888764
No 70
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=99.00 E-value=1.9e-09 Score=95.05 Aligned_cols=157 Identities=20% Similarity=0.285 Sum_probs=101.1
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH-HHHHHHhCCCCCC
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL-HQLSHTFRPSNDH 102 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl-~~i~~~~~~~~~~ 102 (302)
.+.|+++| +|.++|+++.+.||.|||||||+-..+...+ .+|- ..+|=+.|- +..|+ .-|...+......
T Consensus 260 FpvLNk~L-kGhR~GElTvlTGpTGsGKTTFlsEYsLDL~---~QGV---nTLwgSFEi--~n~rla~~mL~Qyagyrl~ 330 (514)
T KOG2373|consen 260 FPVLNKYL-KGHRPGELTVLTGPTGSGKTTFLSEYSLDLF---TQGV---NTLWGSFEI--PNKRLAHWMLVQYAGYRLL 330 (514)
T ss_pred hhHHHHHh-ccCCCCceEEEecCCCCCceeEehHhhHHHH---hhhh---hheeeeeec--chHHHHHHHHHHHccCchH
Confidence 56899998 6899999999999999999999887777664 4554 778877663 23454 3344444332221
Q ss_pred CCC----------Cc--EEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHH
Q 022155 103 NPC----------DY--IFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLF 170 (302)
Q Consensus 103 ~~l----------~~--i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l 170 (302)
+-+ ++ .++......+.+...++.+...+- ...+.-||||+++.+.....-. ..|...-
T Consensus 331 drl~~y~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~y-----V~di~HViIDNLQFmmg~~~~~-----~Drf~~Q 400 (514)
T KOG2373|consen 331 DRLNSYKHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIY-----VEDIQHVIIDNLQFMMGQGMMA-----LDRFHLQ 400 (514)
T ss_pred hhhhhhhHHHHHHhccchHhhhhcccchHHHHHHHHHHHHH-----HHhhhhhhhhhHHHHhccchhc-----cchhhhH
Confidence 111 11 111112233333444454443332 1357889999999987543111 2355556
Q ss_pred HHHHHHHHHHHHHcCcEEEEEecccccCC
Q 022155 171 FKISGMLKAMAVGFGLAVLVTNQVVDLME 199 (302)
Q Consensus 171 ~~l~~~L~~la~~~~~~viv~n~~~~~~~ 199 (302)
..++..++++|.++||-|-++-|.+..-.
T Consensus 401 D~iig~fR~fAT~nn~HvTlVvHPRKed~ 429 (514)
T KOG2373|consen 401 DRIIGYFRQFATQNNIHVTLVVHPRKEDG 429 (514)
T ss_pred HHHHHHHHHHhhccceeEEEEecccccCC
Confidence 78899999999999999999999876433
No 71
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=3.5e-10 Score=96.28 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=31.3
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
...|+++ +--+.+|+++.|.||||||||||+.-+|...
T Consensus 16 ~~vl~~i-~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 16 VEVLEDI-NLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eEEeccc-eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556665 5578999999999999999999998777754
No 72
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.92 E-value=1.2e-08 Score=88.39 Aligned_cols=149 Identities=15% Similarity=0.266 Sum_probs=83.7
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHH-HHHHHHhCCCCC
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRL-HQLSHTFRPSND 101 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl-~~i~~~~~~~~~ 101 (302)
+.|+.+ +--+++|+++.|.||+|||||||+..++... ++.. ..++++... ..+...+ +.++--.+....
T Consensus 16 ~il~~l-s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l--~p~~-----G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~ 87 (258)
T COG1120 16 PILDDL-SFSIPKGEITGILGPNGSGKSTLLKCLAGLL--KPKS-----GEVLLDGKDIASLSPKELAKKLAYVPQSPSA 87 (258)
T ss_pred eEEecc-eEEecCCcEEEEECCCCCCHHHHHHHHhccC--CCCC-----CEEEECCCchhhcCHHHHhhhEEEeccCCCC
Confidence 345554 5579999999999999999999999998764 3233 368888774 2222222 222211111111
Q ss_pred C---CCCCcEEEE--------eCCCHHH---HHHHHHHH--HHHHHh----------------ccCCCCCeeEEEEechh
Q 022155 102 H---NPCDYIFVQ--------SVHSVDQ---LLDIMPKI--ESFIKN----------------SSNSRLPIRLIVIDSIA 149 (302)
Q Consensus 102 ~---~~l~~i~~~--------~~~~~~~---l~~~l~~l--~~~l~~----------------~~~~~~~~~lvVIDsi~ 149 (302)
. .+.+-+.+. ...+.++ ..+.+..+ ..+..+ ....+ ..+++++|+.+
T Consensus 88 ~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ-~~~iLLLDEPT 166 (258)
T COG1120 88 PFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ-ETPILLLDEPT 166 (258)
T ss_pred CCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc-CCCEEEeCCCc
Confidence 0 111111111 1112222 22222211 111000 01112 35999999999
Q ss_pred hhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeccc
Q 022155 150 ALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVV 195 (302)
Q Consensus 150 ~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~ 195 (302)
+.. |+ +.++ ++++.+++++++++.|||++-|.-
T Consensus 167 s~L---------Di--~~Q~--evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 167 SHL---------DI--AHQI--EVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred ccc---------CH--HHHH--HHHHHHHHHHHhcCCEEEEEecCH
Confidence 865 22 2223 788999999999999999999863
No 73
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.91 E-value=9.1e-09 Score=88.78 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=91.3
Q ss_pred cccCCCCCCccccC--------ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 10 LLDNPLTTEKCTVG--------CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 10 l~~~~~~~~~i~tG--------~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+++.+.....++++ +.++|.+ +--|..|++..|+|++||||||++..++... + ..+| .+|++..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~V-sf~i~~ge~~glVGESG~GKSTlgr~i~~L~--~-pt~G----~i~f~g~ 75 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGV-SFSIKEGETLGLVGESGCGKSTLGRLILGLE--E-PTSG----EILFEGK 75 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecce-eEEEcCCCEEEEEecCCCCHHHHHHHHHcCc--C-CCCc----eEEEcCc
Confidence 44444455555543 3567766 5679999999999999999999999888764 2 3333 5777755
Q ss_pred CC--CCH----HHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhc
Q 022155 82 FP--FPM----RRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSD 155 (302)
Q Consensus 82 ~~--~~~----~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~ 155 (302)
.- ++. +++.++...... +...+.+- -.. .+.-+ .+-+.-.+++. .+++++|.|.+.+.+.
T Consensus 76 ~i~~~~~~~~~~~v~elL~~Vgl--~~~~~~ry-Phe-lSGGQ-rQRi~IARALa-------l~P~liV~DEpvSaLD-- 141 (268)
T COG4608 76 DITKLSKEERRERVLELLEKVGL--PEEFLYRY-PHE-LSGGQ-RQRIGIARALA-------LNPKLIVADEPVSALD-- 141 (268)
T ss_pred chhhcchhHHHHHHHHHHHHhCC--CHHHhhcC-Ccc-cCchh-hhhHHHHHHHh-------hCCcEEEecCchhhcc--
Confidence 31 122 334444444321 11111110 011 11111 11222222333 2459999999888652
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 156 FDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 156 ~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
...+ .++++.|+.+.++++++.+++.|.-.
T Consensus 142 -------vSiq----aqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 142 -------VSVQ----AQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred -------hhHH----HHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 2222 36789999999999999999999543
No 74
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.90 E-value=2.8e-09 Score=90.41 Aligned_cols=150 Identities=13% Similarity=0.165 Sum_probs=81.4
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHH-----HHHHHh
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLH-----QLSHTF 96 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~-----~i~~~~ 96 (302)
...|+.+ +--+++|+++.|+||+|||||||+..+ ....-| .+ ..++|+... .++...+. .++.-|
T Consensus 18 ~~~L~~v-~l~i~~Ge~vaI~GpSGSGKSTLLnii-g~ld~p--t~----G~v~i~g~d~~~l~~~~~~~~R~~~iGfvF 89 (226)
T COG1136 18 VEALKDV-NLEIEAGEFVAIVGPSGSGKSTLLNLL-GGLDKP--TS----GEVLINGKDLTKLSEKELAKLRRKKIGFVF 89 (226)
T ss_pred eEecccc-eEEEcCCCEEEEECCCCCCHHHHHHHH-hcccCC--CC----ceEEECCEEcCcCCHHHHHHHHHHhEEEEC
Confidence 3456554 457899999999999999999998555 444333 33 346666532 33333322 222223
Q ss_pred CCCCC---CCCCCcEEE----EeCCC--HHH-HHHHHHH--HHHHHH-hc----------------cCCCCCeeEEEEec
Q 022155 97 RPSND---HNPCDYIFV----QSVHS--VDQ-LLDIMPK--IESFIK-NS----------------SNSRLPIRLIVIDS 147 (302)
Q Consensus 97 ~~~~~---~~~l~~i~~----~~~~~--~~~-l~~~l~~--l~~~l~-~~----------------~~~~~~~~lvVIDs 147 (302)
+.++. -++.+|+.+ ..... ... ..+++.. +..... .. +.. .++++|+-|+
T Consensus 90 Q~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~-~~P~iilADE 168 (226)
T COG1136 90 QNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI-NNPKIILADE 168 (226)
T ss_pred ccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh-cCCCeEEeeC
Confidence 33321 234556553 11111 011 1111111 110100 00 011 2348888888
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeccc
Q 022155 148 IAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVV 195 (302)
Q Consensus 148 i~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~ 195 (302)
.+.-... .. -..++..|++++++++.|||+++|..
T Consensus 169 PTgnLD~---------~t----~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 169 PTGNLDS---------KT----AKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred ccccCCh---------HH----HHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 8864311 11 24778889999999999999999964
No 75
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.89 E-value=1.1e-08 Score=85.05 Aligned_cols=145 Identities=13% Similarity=0.203 Sum_probs=86.6
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCC---HHHH-HHHHHHhCCC
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFP---MRRL-HQLSHTFRPS 99 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~---~~rl-~~i~~~~~~~ 99 (302)
...|+.+ +--+.+|+++.|+||||||||||+..+..... ..+ .-++|+.+.... ..++ ++++..|+.+
T Consensus 15 ~~VLkgi-~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~----G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~f 86 (240)
T COG1126 15 KEVLKGI-SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDS----GSITVDGEDVGDKKDILKLRRKVGMVFQQF 86 (240)
T ss_pred eEEecCc-ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCC----ceEEECCEeccchhhHHHHHHhcCeecccc
Confidence 3345554 44689999999999999999999998865432 333 469999864322 2223 2344445544
Q ss_pred CC---CCCCCcEEEEeC----CCHHHHHHHHHHHHHHHHhc-------------------------cCCCCCeeEEEEec
Q 022155 100 ND---HNPCDYIFVQSV----HSVDQLLDIMPKIESFIKNS-------------------------SNSRLPIRLIVIDS 147 (302)
Q Consensus 100 ~~---~~~l~~i~~~~~----~~~~~l~~~l~~l~~~l~~~-------------------------~~~~~~~~lvVIDs 147 (302)
+. .++++|+..... .+.++..+ ...++++.+ +.. .+++++..|.
T Consensus 87 nLFPHlTvleNv~lap~~v~~~~k~eA~~---~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa-M~P~vmLFDE 162 (240)
T COG1126 87 NLFPHLTVLENVTLAPVKVKKLSKAEARE---KALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA-MDPKVMLFDE 162 (240)
T ss_pred cccccchHHHHHHhhhHHHcCCCHHHHHH---HHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc-CCCCEEeecC
Confidence 32 256677655321 12222111 111111110 011 2458888898
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecc
Q 022155 148 IAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194 (302)
Q Consensus 148 i~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~ 194 (302)
.++.+..+ +..+++..++.||++ +.|+|+++|-
T Consensus 163 PTSALDPE-------------lv~EVL~vm~~LA~e-GmTMivVTHE 195 (240)
T COG1126 163 PTSALDPE-------------LVGEVLDVMKDLAEE-GMTMIIVTHE 195 (240)
T ss_pred CcccCCHH-------------HHHHHHHHHHHHHHc-CCeEEEEech
Confidence 88865332 256888899999976 8999999885
No 76
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.89 E-value=4.7e-09 Score=92.50 Aligned_cols=66 Identities=17% Similarity=0.268 Sum_probs=43.4
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHH
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQL 92 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i 92 (302)
+..+|.+ +-.+.+|+++.|+|+||||||++++.++... |...+...+.-++++.++ .++.++++++
T Consensus 18 v~av~~v-s~~i~~GE~lgiVGESGsGKS~~~~aim~ll--p~~~~~i~~G~i~f~g~~l~~l~~~~~~~i 85 (316)
T COG0444 18 VKAVDGV-SFELKKGEILGIVGESGSGKSVLAKAIMGLL--PKPNARIVGGEILFDGKDLLSLSEKELRKI 85 (316)
T ss_pred EEEEece-eEEEcCCcEEEEEcCCCCCHHHHHHHHHhcc--CCCCCeEeeeEEEECCcccccCCHHHHHhh
Confidence 4567766 5679999999999999999999999998864 311111111245666654 3444444333
No 77
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.88 E-value=3e-09 Score=90.45 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=84.4
Q ss_pred CChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC--CCHHHHH-HHHHHhCC-
Q 022155 23 GCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP--FPMRRLH-QLSHTFRP- 98 (302)
Q Consensus 23 G~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~--~~~~rl~-~i~~~~~~- 98 (302)
+-..+|++ +--|+.|+++.|.|||||||||++..+-+.. .+..| -++|+.+.. .+...|+ .|+-..+.
T Consensus 13 ~~~av~~v-~l~I~~gef~vliGpSGsGKTTtLkMINrLi--ept~G-----~I~i~g~~i~~~d~~~LRr~IGYviQqi 84 (309)
T COG1125 13 NKKAVDDV-NLTIEEGEFLVLIGPSGSGKTTTLKMINRLI--EPTSG-----EILIDGEDISDLDPVELRRKIGYVIQQI 84 (309)
T ss_pred Cceeeeee-eEEecCCeEEEEECCCCCcHHHHHHHHhccc--CCCCc-----eEEECCeecccCCHHHHHHhhhhhhhhc
Confidence 44566765 5679999999999999999999998776553 33333 589998863 3444443 34443332
Q ss_pred -CCC-CCCCCcEEEEe---CCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEec--hhhhhhhccCCChhhHHHHHHHH-
Q 022155 99 -SND-HNPCDYIFVQS---VHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDS--IAALFRSDFDNTMDDLKKRSFLF- 170 (302)
Q Consensus 99 -~~~-~~~l~~i~~~~---~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDs--i~~~~~~~~~~~~~~~~~r~~~l- 170 (302)
..| .++.+||-+.. -++.+...+-..++.++ +=+|+ +..-|+.+++++. ++|.-++
T Consensus 85 gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~l-------------vgL~p~~~~~RyP~eLSGGQ---QQRVGv~R 148 (309)
T COG1125 85 GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDL-------------VGLDPSEYADRYPHELSGGQ---QQRVGVAR 148 (309)
T ss_pred ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHH-------------hCCCHHHHhhcCchhcCcch---hhHHHHHH
Confidence 112 24556655432 23434333322222221 11222 2222334444332 2222111
Q ss_pred -----------------------HHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 171 -----------------------FKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 171 -----------------------~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
.++-..++++.++.+.|+|+++|..+
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid 197 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID 197 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH
Confidence 23345578888899999999999654
No 78
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.86 E-value=6.4e-09 Score=88.04 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=36.6
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
..++.+ .--+.+|+++.|+|++||||||++..++.... | ..| .++++...
T Consensus 21 ~~l~~V-S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-p-~~G-----~I~~~G~~ 70 (252)
T COG1124 21 HALNNV-SLEIERGETLGIVGESGSGKSTLARLLAGLEK-P-SSG-----SILLDGKP 70 (252)
T ss_pred hhhcce-eEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-C-CCc-----eEEECCcc
Confidence 345544 34689999999999999999999998887542 2 233 57777653
No 79
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.82 E-value=1.8e-08 Score=84.87 Aligned_cols=165 Identities=15% Similarity=0.208 Sum_probs=98.5
Q ss_pred cccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHH
Q 022155 10 LLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMR 87 (302)
Q Consensus 10 l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~ 87 (302)
.++.+.....+|-|-..|+++ +--|++|+++.|.|++|+|||||+..+...+ ++..| -+++...+ .....
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~V-nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~--d~t~G-----~i~~~g~~i~~~~~k 74 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDV-NLEINQGEMVAIIGPSGAGKSTLLRSLNGLV--DPTSG-----EILFNGVQITKLKGK 74 (258)
T ss_pred eEEEeeeeeecCCCceeeeeE-eEEeCCCcEEEEECCCCCcHHHHHHHHhccc--CCCcc-----eEEecccchhccchH
Confidence 345555666777888899987 6789999999999999999999999998854 32333 46666654 23333
Q ss_pred HHHHHHHH----hCCCCC---CCCCCcEEEEe------------CCCHHHHHHHHHHHHH------HHHhc---------
Q 022155 88 RLHQLSHT----FRPSND---HNPCDYIFVQS------------VHSVDQLLDIMPKIES------FIKNS--------- 133 (302)
Q Consensus 88 rl~~i~~~----~~~~~~---~~~l~~i~~~~------------~~~~~~l~~~l~~l~~------~l~~~--------- 133 (302)
.++++... |+..+. ..+++|+...+ .++.++-..++..++. .+.+.
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQ 154 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQ 154 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhH
Confidence 34443333 332221 12344443321 2233322222221110 00000
Q ss_pred ------cCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 134 ------SNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 134 ------~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
... .++++|.-|+..+-+.. .. -..++..|++++++.++|||+.-|..+
T Consensus 155 RVaIARaL~-Q~pkiILADEPvasLDp--------~~-----a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 155 RVAIARALV-QQPKIILADEPVASLDP--------ES-----AKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HHHHHHHHh-cCCCEEecCCcccccCh--------hh-----HHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 011 24588888887663311 11 247889999999999999999999754
No 80
>PF13479 AAA_24: AAA domain
Probab=98.81 E-value=4.6e-08 Score=83.38 Aligned_cols=123 Identities=21% Similarity=0.192 Sum_probs=77.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHH
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVD 117 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~ 117 (302)
+-.+.|+|+||+|||+||..+ + +++|||+|..... +. .+.+.-...+.+.+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~------~--------k~l~id~E~g~~~--~~-------------~~~~~~~i~i~s~~ 53 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL------P--------KPLFIDTENGSDS--LK-------------FLDDGDVIPITSWE 53 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC------C--------CeEEEEeCCCccc--hh-------------hhcCCCeeCcCCHH
Confidence 446899999999999999755 1 7899999975321 10 11122334455777
Q ss_pred HHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhh---ccC----------CCh---hhHHHHHHHHHHHHHHHHHHH
Q 022155 118 QLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRS---DFD----------NTM---DDLKKRSFLFFKISGMLKAMA 181 (302)
Q Consensus 118 ~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~---~~~----------~~~---~~~~~r~~~l~~l~~~L~~la 181 (302)
++.+.+..+.+.. .+.+.|||||++.+... ... +.+ .....-. ..+.+.++++.
T Consensus 54 ~~~~~~~~l~~~~-------~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~---~~~~~~i~~l~ 123 (213)
T PF13479_consen 54 DFLEALDELEEDE-------ADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQ---QEFMRFIDKLL 123 (213)
T ss_pred HHHHHHHHHHhcc-------CCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHH---HHHHHHHHHHH
Confidence 7777666554432 47899999999997432 111 010 0112212 23444455566
Q ss_pred HHcCcEEEEEecccccCC
Q 022155 182 VGFGLAVLVTNQVVDLME 199 (302)
Q Consensus 182 ~~~~~~viv~n~~~~~~~ 199 (302)
+..++.||+|.|......
T Consensus 124 ~~~~~~VI~tah~~~~~~ 141 (213)
T PF13479_consen 124 NALGKNVIFTAHAKEEED 141 (213)
T ss_pred HHCCCcEEEEEEEEEEEc
Confidence 678999999999876554
No 81
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.80 E-value=1.7e-07 Score=75.13 Aligned_cols=154 Identities=15% Similarity=0.197 Sum_probs=91.8
Q ss_pred cccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHHHHHhC
Q 022155 20 CTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQLSHTFR 97 (302)
Q Consensus 20 i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i~~~~~ 97 (302)
..++-+.||.+ .-.+.+|+.+.|.||+|||||||..++|... ++.. ..+|+.+|. +..++.+++-...+.
T Consensus 12 ~a~~a~il~~i-sl~v~~Ge~iaitGPSG~GKStllk~va~Li--sp~~-----G~l~f~Ge~vs~~~pea~Rq~VsY~~ 83 (223)
T COG4619 12 LAGDAKILNNI-SLSVRAGEFIAITGPSGCGKSTLLKIVASLI--SPTS-----GTLLFEGEDVSTLKPEAYRQQVSYCA 83 (223)
T ss_pred hcCCCeeecce-eeeecCCceEEEeCCCCccHHHHHHHHHhcc--CCCC-----ceEEEcCccccccChHHHHHHHHHHH
Confidence 35566677776 5678999999999999999999998887653 3233 468888775 455666544332221
Q ss_pred ---CCCCCCCCCcEEEE-----eCCCHHHHHHHHHHH---------------------HHHHHhccCCCCCeeEEEEech
Q 022155 98 ---PSNDHNPCDYIFVQ-----SVHSVDQLLDIMPKI---------------------ESFIKNSSNSRLPIRLIVIDSI 148 (302)
Q Consensus 98 ---~~~~~~~l~~i~~~-----~~~~~~~l~~~l~~l---------------------~~~l~~~~~~~~~~~lvVIDsi 148 (302)
....+.+.||+.+. +-++.....+++.+. -.++.. . ...++++.+|.+
T Consensus 84 Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~--L-q~~P~ILLLDE~ 160 (223)
T COG4619 84 QTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRN--L-QFMPKILLLDEI 160 (223)
T ss_pred cCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHH--h-hcCCceEEecCc
Confidence 12234566666542 112333333333211 011100 0 134599999999
Q ss_pred hhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeccccc
Q 022155 149 AALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDL 197 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~ 197 (302)
++.+... ..| .+-..+.++.++.+++|+-++|..+.
T Consensus 161 TsALD~~--------nkr-----~ie~mi~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 161 TSALDES--------NKR-----NIEEMIHRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred hhhcChh--------hHH-----HHHHHHHHHhhhhceEEEEEecChHH
Confidence 9865211 222 33344555566889999999997554
No 82
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.80 E-value=4.4e-08 Score=84.43 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=31.8
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+++ +--+++|+++.|.||+|+|||||+..++...
T Consensus 18 ~vl~~i-~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 18 PVLEDI-SLSVEKGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred eeeecc-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467766 5679999999999999999999999888754
No 83
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.80 E-value=1.6e-07 Score=75.76 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=48.7
Q ss_pred CccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 6 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 6 ~~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
++++|++.......+. +..+.+++ .--+.+|++..|+|++|||||||+..++..+ ++..| .+.|..-.+
T Consensus 2 ~~~PLL~V~~lsk~Yg-~~~gc~~v-sF~l~PGeVLgiVGESGSGKtTLL~~is~rl--~p~~G----~v~Y~~r~~ 70 (258)
T COG4107 2 MDKPLLSVSGLSKLYG-PGKGCRDV-SFDLYPGEVLGIVGESGSGKTTLLKCISGRL--TPDAG----TVTYRMRDG 70 (258)
T ss_pred CCCcceeehhhhhhhC-CCcCcccc-ceeecCCcEEEEEecCCCcHHhHHHHHhccc--CCCCC----eEEEEcCCC
Confidence 4455776666555444 33344444 3468999999999999999999999888775 33444 788877554
No 84
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.77 E-value=1e-07 Score=78.11 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=54.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQL 119 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l 119 (302)
++.|.|++|||||+||.+++.. .++ +++|+.+...++.+--+.+.... ...+. ...... ...++
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~------~~~---~~~y~at~~~~d~em~~rI~~H~-~~R~~----~w~t~E--~~~~l 64 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE------LGG---PVTYIATAEAFDDEMAERIARHR-KRRPA----HWRTIE--TPRDL 64 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh------cCC---CeEEEEccCcCCHHHHHHHHHHH-HhCCC----CceEee--cHHHH
Confidence 4789999999999999999765 233 79999999888765333333221 11111 111111 11222
Q ss_pred HHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccC
Q 022155 120 LDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFD 157 (302)
Q Consensus 120 ~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~ 157 (302)
.+ .+.+ ..+.+.|+||+++.+....+.
T Consensus 65 ~~-------~l~~----~~~~~~VLIDclt~~~~n~l~ 91 (169)
T cd00544 65 VS-------ALKE----LDPGDVVLIDCLTLWVTNLLF 91 (169)
T ss_pred HH-------HHHh----cCCCCEEEEEcHhHHHHHhCC
Confidence 22 2222 113478999999998766544
No 85
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.77 E-value=1.6e-08 Score=88.37 Aligned_cols=152 Identities=13% Similarity=0.233 Sum_probs=91.5
Q ss_pred CChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHH----HHHHh
Q 022155 23 GCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQ----LSHTF 96 (302)
Q Consensus 23 G~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~----i~~~~ 96 (302)
....||++ .--+++|+++.|.|.||+|||||...+-..- - +.. .-+++++.+ .++...+++ ++.-|
T Consensus 18 ~~~al~~v-sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le-~--Pts----G~v~v~G~di~~l~~~~Lr~~R~~IGMIF 89 (339)
T COG1135 18 TVTALDDV-SLEIPKGEIFGIIGYSGAGKSTLLRLINLLE-R--PTS----GSVFVDGQDLTALSEAELRQLRQKIGMIF 89 (339)
T ss_pred ceeeeccc-eEEEcCCcEEEEEcCCCCcHHHHHHHHhccC-C--CCC----ceEEEcCEecccCChHHHHHHHhhccEEe
Confidence 35678876 5579999999999999999999998774432 2 333 247777654 344443433 33333
Q ss_pred CCC---CCCCCCCcEEEE---eCCCHHHHHHHHHHHHHHH------Hhc----------------cCCCCCeeEEEEech
Q 022155 97 RPS---NDHNPCDYIFVQ---SVHSVDQLLDIMPKIESFI------KNS----------------SNSRLPIRLIVIDSI 148 (302)
Q Consensus 97 ~~~---~~~~~l~~i~~~---~~~~~~~l~~~l~~l~~~l------~~~----------------~~~~~~~~lvVIDsi 148 (302)
+.+ ...++.+|+-+. .-.+.++..+-+.++.++. ... +... +++++..|..
T Consensus 90 QhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~-~P~iLL~DEa 168 (339)
T COG1135 90 QHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN-NPKILLCDEA 168 (339)
T ss_pred ccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc-CCCEEEecCc
Confidence 332 234566676552 1122233322222221111 000 1122 3489999998
Q ss_pred hhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 149 AALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
++....+ . -..++..|+++.+++++||++++|-.+
T Consensus 169 TSALDP~---------T----T~sIL~LL~~In~~lglTIvlITHEm~ 203 (339)
T COG1135 169 TSALDPE---------T----TQSILELLKDINRELGLTIVLITHEME 203 (339)
T ss_pred cccCChH---------H----HHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 8865321 1 347889999999999999999999543
No 86
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.76 E-value=4.2e-09 Score=89.21 Aligned_cols=165 Identities=15% Similarity=0.215 Sum_probs=96.3
Q ss_pred cccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHH
Q 022155 10 LLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMR 87 (302)
Q Consensus 10 l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~ 87 (302)
+++.+....++- |+..+|++ +--+.+|+++.|.||+|+||||+...+...+. +.+| .+++..+. ..++.
T Consensus 4 lL~v~~l~k~FG-Gl~Al~~V-sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G----~v~~~G~~it~l~p~ 74 (250)
T COG0411 4 LLEVRGLSKRFG-GLTAVNDV-SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSG----TVIFRGRDITGLPPH 74 (250)
T ss_pred eeeeccceeecC-CEEEEece-eEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCc----eEEECCcccCCCCHH
Confidence 344444444444 67778877 56789999999999999999999987777652 2333 46666553 45555
Q ss_pred HHHHHHH--HhCCCCC---CCCCCcEEEEeC------------CCHHHHHHHHHHHHHHHHhc-----------------
Q 022155 88 RLHQLSH--TFRPSND---HNPCDYIFVQSV------------HSVDQLLDIMPKIESFIKNS----------------- 133 (302)
Q Consensus 88 rl~~i~~--~~~~~~~---~~~l~~i~~~~~------------~~~~~l~~~l~~l~~~l~~~----------------- 133 (302)
++..++. .|+...+ .++++|+.+... ....+..+...+...+++..
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ 154 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence 5444333 2432221 245555544211 00001111222222222111
Q ss_pred --------cCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeccccc
Q 022155 134 --------SNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDL 197 (302)
Q Consensus 134 --------~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~ 197 (302)
... ..++++.+|+..+=.... + ..++...++++.++.+++|+++-|..+-
T Consensus 155 qR~LEIArALa-~~P~lLLLDEPaAGln~~---------e----~~~l~~~i~~i~~~~g~tillIEHdM~~ 212 (250)
T COG0411 155 QRRLEIARALA-TQPKLLLLDEPAAGLNPE---------E----TEELAELIRELRDRGGVTILLIEHDMKL 212 (250)
T ss_pred hHHHHHHHHHh-cCCCEEEecCccCCCCHH---------H----HHHHHHHHHHHHhcCCcEEEEEEeccHH
Confidence 111 235999999998844321 1 3467788888888899999999997653
No 87
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=98.74 E-value=3.8e-07 Score=82.29 Aligned_cols=188 Identities=20% Similarity=0.239 Sum_probs=111.3
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHh-CCCCCCCCCC-------
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTF-RPSNDHNPCD------- 106 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~-~~~~~~~~l~------- 106 (302)
...|+...|-|.||+|||+|++.++.... ..+ .++||++- .++.++.++.-.. ....+..+++
T Consensus 7 ~~~G~TLLIKG~PGTGKTtfaLelL~~l~---~~~----~v~YISTR--Vd~d~vy~~y~~~~~~i~~~~vlDatQd~~~ 77 (484)
T PF07088_consen 7 QEPGQTLLIKGEPGTGKTTFALELLNSLK---DHG----NVMYISTR--VDQDTVYEMYPWIEESIDPTNVLDATQDPFE 77 (484)
T ss_pred CCCCcEEEEecCCCCCceeeehhhHHHHh---ccC----CeEEEEec--cCHHHHHHhhhhhccccChhhhhhhccchhh
Confidence 45799999999999999999999988763 222 68999977 4455655433110 0001101110
Q ss_pred ----cEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHH
Q 022155 107 ----YIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAV 182 (302)
Q Consensus 107 ----~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~ 182 (302)
...-......+.+.++++++.... ..-+|++||..+++..- .. ....+.. +..+.+.|-.+|+
T Consensus 78 ~~~~~~vp~~~l~~ds~~~f~~~i~~~~--------k~~iI~~DSWdaiieyl-a~---~~~~~ed-~e~l~~dLv~lar 144 (484)
T PF07088_consen 78 LPLDKDVPFERLDIDSFRDFVDKINEAG--------KKPIIAFDSWDAIIEYL-AE---EHDEPED-IETLTNDLVELAR 144 (484)
T ss_pred ccccccCcccccCHHHHHHHHHHhhhcc--------cCcEEEEecHHHHHHHh-hh---hhcCcHH-HHHHHHHHHHHHh
Confidence 111111234556666666554322 33899999966655311 10 0111222 3566677778899
Q ss_pred HcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccccccCCCCCCC
Q 022155 183 GFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSG 262 (302)
Q Consensus 183 ~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~ 262 (302)
..++-+|++.+..+... ..|.++-.+-|.-... ++ |
T Consensus 145 d~g~~LIlVsEsa~~~~------------------------------LdYivDGVVTL~v~~d----er----G------ 180 (484)
T PF07088_consen 145 DMGINLILVSESAENEP------------------------------LDYIVDGVVTLQVKND----ER----G------ 180 (484)
T ss_pred hcCceEEEEEecCCCCc------------------------------chheeeeEEEEEeccc----cC----C------
Confidence 99999999988754322 2356777777732222 11 2
Q ss_pred CCCcccccceEEEEEEECCCCC--CceeeEEEecC
Q 022155 263 SEDFVCRRTRRSLHVVFAPHLA--DTSCEFEITRE 295 (302)
Q Consensus 263 ~~~~~~~~~~R~~~v~ks~~~~--~~~~~F~I~~~ 295 (302)
...|.+++.|-++.. .....|..-+.
T Consensus 181 -------R~~R~L~LeKLRGV~I~q~~Y~fTL~nG 208 (484)
T PF07088_consen 181 -------RTRRYLRLEKLRGVRIKQRLYPFTLANG 208 (484)
T ss_pred -------ceEEEEEehhhcCcccCCccceEEeeCC
Confidence 578999999988774 33455555443
No 88
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.73 E-value=9.8e-09 Score=92.20 Aligned_cols=146 Identities=10% Similarity=0.169 Sum_probs=79.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHHHHHhCCC--CC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQLSHTFRPS--ND 101 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i~~~~~~~--~~ 101 (302)
.++.+ +--+..|+++.|.||+||||||++..||.... ..+ +-++|+.+. .++++. +.++..|+.. .|
T Consensus 18 ~l~~i-~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~----G~I~i~g~~vt~l~P~~-R~iamVFQ~yALyP 88 (338)
T COG3839 18 VLKDV-NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTS----GEILIDGRDVTDLPPEK-RGIAMVFQNYALYP 88 (338)
T ss_pred eeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCC----ceEEECCEECCCCChhH-CCEEEEeCCccccC
Confidence 44443 44688999999999999999999999988642 233 358888764 333322 3344434322 12
Q ss_pred C-CCCCcEEEE-eC--CCHHHHHHHHHH------HHHHHHhc----------------cCCCCCeeEEEEechhhhhhhc
Q 022155 102 H-NPCDYIFVQ-SV--HSVDQLLDIMPK------IESFIKNS----------------SNSRLPIRLIVIDSIAALFRSD 155 (302)
Q Consensus 102 ~-~~l~~i~~~-~~--~~~~~l~~~l~~------l~~~l~~~----------------~~~~~~~~lvVIDsi~~~~~~~ 155 (302)
. ++.+|+-+. .. ...+++..-+.+ |..++.+. +.- ..++++.+|...+-.
T Consensus 89 hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlV-r~P~v~L~DEPlSnL--- 164 (338)
T COG3839 89 HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALV-RKPKVFLLDEPLSNL--- 164 (338)
T ss_pred CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHh-cCCCEEEecCchhHh---
Confidence 2 444555431 11 111222111111 11222111 011 234777888765522
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecc
Q 022155 156 FDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194 (302)
Q Consensus 156 ~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~ 194 (302)
+.+.+. .+-..|+++-++.++|+|+++|.
T Consensus 165 --------Da~lR~--~mr~ei~~lh~~l~~T~IYVTHD 193 (338)
T COG3839 165 --------DAKLRV--LMRSEIKKLHERLGTTTIYVTHD 193 (338)
T ss_pred --------hHHHHH--HHHHHHHHHHHhcCCcEEEEcCC
Confidence 222111 44556778888999999999983
No 89
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.72 E-value=4.7e-08 Score=82.23 Aligned_cols=142 Identities=13% Similarity=0.240 Sum_probs=86.1
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHHHHHhCCCC-----CCCCC
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQLSHTFRPSN-----DHNPC 105 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i~~~~~~~~-----~~~~l 105 (302)
--+++|+++.|.|++|+||||++..++... + ...| .+.++.++ ..++.+....+..+..+. .-++.
T Consensus 24 l~v~~Geiv~llG~NGaGKTTlLkti~Gl~--~-~~~G----~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVe 96 (237)
T COG0410 24 LEVERGEIVALLGRNGAGKTTLLKTIMGLV--R-PRSG----RIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVE 96 (237)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCC--C-CCCe----eEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHH
Confidence 468899999999999999999999998864 3 2232 35555553 345544444333322211 11333
Q ss_pred CcEEEE--e-------CCCHHHHHHHHHHHHHHHHhc----------------cCCCCCeeEEEEechhhhhhhccCCCh
Q 022155 106 DYIFVQ--S-------VHSVDQLLDIMPKIESFIKNS----------------SNSRLPIRLIVIDSIAALFRSDFDNTM 160 (302)
Q Consensus 106 ~~i~~~--~-------~~~~~~l~~~l~~l~~~l~~~----------------~~~~~~~~lvVIDsi~~~~~~~~~~~~ 160 (302)
+|+.+- . ..+.+++.+++..+.+...+. +.-. .++++++|..+.=...
T Consensus 97 ENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~-~PklLLLDEPs~GLaP------ 169 (237)
T COG0410 97 ENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS-RPKLLLLDEPSEGLAP------ 169 (237)
T ss_pred HHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc-CCCEEEecCCccCcCH------
Confidence 454431 0 011445555555544333221 0112 3599999998873321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeccc
Q 022155 161 DDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVV 195 (302)
Q Consensus 161 ~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~ 195 (302)
.+..++...+++|.++.++||+++-|-.
T Consensus 170 -------~iv~~I~~~i~~l~~~~g~tIlLVEQn~ 197 (237)
T COG0410 170 -------KIVEEIFEAIKELRKEGGMTILLVEQNA 197 (237)
T ss_pred -------HHHHHHHHHHHHHHHcCCcEEEEEeccH
Confidence 1256788889999988899999998854
No 90
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.70 E-value=2.6e-08 Score=81.31 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=42.8
Q ss_pred cCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 12 DNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 12 ~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+.....++.|-+.|+++ +--|++|+++-|+||||+|||||+..+....
T Consensus 3 ~f~~V~k~Y~~g~~aL~~v-s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 3 RFENVSKAYPGGREALRDV-SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred eehhhhhhcCCCchhhhCc-eEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3455667788887799998 5689999999999999999999999888876
No 91
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=5.5e-07 Score=74.11 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=36.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.||.+ .--||+|.+|.|.||+|+|||||+-.+++. ++... ..+||+..+
T Consensus 16 vl~~i-sl~i~~g~iTs~IGPNGAGKSTLLS~~sRL--~~~d~-----G~i~i~g~~ 64 (252)
T COG4604 16 VLDDV-SLDIPKGGITSIIGPNGAGKSTLLSMMSRL--LKKDS-----GEITIDGLE 64 (252)
T ss_pred eeccc-eeeecCCceeEEECCCCccHHHHHHHHHHh--ccccC-----ceEEEeeee
Confidence 34554 346999999999999999999998655554 33333 468988764
No 92
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.68 E-value=9.1e-08 Score=85.48 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=33.1
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
...|+.+ +.-+++|+++.|.||+|+||||++..++...
T Consensus 18 ~~~l~~v-s~~i~~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 18 KTALDGV-SFEVEPGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CEEEece-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 4567776 6789999999999999999999998888765
No 93
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.67 E-value=2.7e-08 Score=85.66 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=38.6
Q ss_pred CChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 23 GCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 23 G~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+.+.|+.+ +-.+.+|+.+.|.|++|||||||+..++... ++..| .++++...
T Consensus 16 ~~~~l~~v-~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl--~p~~G-----~v~~~g~~ 67 (235)
T COG1122 16 RKAALKDV-SLEIEKGERVLLIGPNGSGKSTLLKLLNGLL--KPTSG-----EVLVDGLD 67 (235)
T ss_pred Cceeeeee-EEEECCCCEEEEECCCCCCHHHHHHHHcCcC--cCCCC-----EEEECCee
Confidence 33556555 5679999999999999999999999887764 32333 35777654
No 94
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.67 E-value=1.4e-07 Score=73.58 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=73.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHH-HHHHHHHhCCCCCCCCCCcEEEEeCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRR-LHQLSHTFRPSNDHNPCDYIFVQSVHS 115 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~r-l~~i~~~~~~~~~~~~l~~i~~~~~~~ 115 (302)
.+.++.|+|++|+|||+++.+++........... ...++|++....-.... ..++...+...... ..+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----------~~~ 71 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----------RQT 71 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------TS-
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------cCC
Confidence 4678999999999999999999988631000000 12789998765444444 35566655422211 233
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecc
Q 022155 116 VDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194 (302)
Q Consensus 116 ~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~ 194 (302)
..++. ..+.+.+.+ .+..+||||++..+. . ..+++.|+.+..+.++.+|++.+.
T Consensus 72 ~~~l~---~~~~~~l~~-----~~~~~lviDe~~~l~--~---------------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 72 SDELR---SLLIDALDR-----RRVVLLVIDEADHLF--S---------------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHH---HHHHHHHHH-----CTEEEEEEETTHHHH--T---------------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHH---HHHHHHHHh-----cCCeEEEEeChHhcC--C---------------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 44433 444555554 444799999999854 1 144566677777899999998765
No 95
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.66 E-value=6.4e-08 Score=89.45 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=96.3
Q ss_pred cccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC-CCCH-H
Q 022155 10 LLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF-PFPM-R 87 (302)
Q Consensus 10 l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~-~~~~-~ 87 (302)
++..+.-.++++ |+-.+|.+ +-.+++|+|-.|.|++|+|||||+..+...++ | ..| -+|++... .|.. .
T Consensus 4 ~l~~~~itK~f~-~~~And~V-~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-P-~~G-----eI~v~G~~v~~~sP~ 74 (501)
T COG3845 4 ALEMRGITKRFP-GVVANDDV-SLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-P-DSG-----EIRVDGKEVRIKSPR 74 (501)
T ss_pred eEEEeccEEEcC-CEEecCce-eeeecCCcEEEEeccCCCCHHHHHHHHhCccc-C-Ccc-----eEEECCEEeccCCHH
Confidence 344555566777 88889987 67899999999999999999999988877763 3 333 48888764 2322 2
Q ss_pred HHH--HHHHHhCC---CCCCCCCCcEEEEeCC------CHHHHHHHHHH----------------------------HHH
Q 022155 88 RLH--QLSHTFRP---SNDHNPCDYIFVQSVH------SVDQLLDIMPK----------------------------IES 128 (302)
Q Consensus 88 rl~--~i~~~~~~---~~~~~~l~~i~~~~~~------~~~~l~~~l~~----------------------------l~~ 128 (302)
... -|++.++. ...-++++|+.+.... +.....+-+.+ +..
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHH
Confidence 111 12222222 1122455666553321 11111111111 111
Q ss_pred HHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeccc
Q 022155 129 FIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVV 195 (302)
Q Consensus 129 ~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~ 195 (302)
++ .+.+++|+|..++.+... + ..+++..|++|++ .+.+||+++|--
T Consensus 155 Ly-------r~a~iLILDEPTaVLTP~---------E----~~~lf~~l~~l~~-~G~tIi~ITHKL 200 (501)
T COG3845 155 LY-------RGARLLILDEPTAVLTPQ---------E----ADELFEILRRLAA-EGKTIIFITHKL 200 (501)
T ss_pred Hh-------cCCCEEEEcCCcccCCHH---------H----HHHHHHHHHHHHH-CCCEEEEEeccH
Confidence 22 356999999999976431 2 4577788888775 599999999943
No 96
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.65 E-value=3.5e-07 Score=75.83 Aligned_cols=137 Identities=13% Similarity=0.199 Sum_probs=75.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHH-HH------HHHh
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLH-QL------SHTF 96 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~-~i------~~~~ 96 (302)
.|+.+ +--+.+|+++.|.|++|+|||||+..++... ++..| .++++... ..+..++. .+ ...+
T Consensus 14 ~l~~~-~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~--~~~~G-----~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~ 85 (180)
T cd03214 14 VLDDL-SLSIEAGEIVGILGPNGAGKSTLLKTLAGLL--KPSSG-----EILLDGKDLASLSPKELARKIAYVPQALELL 85 (180)
T ss_pred eEeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCc-----EEEECCEECCcCCHHHHHHHHhHHHHHHHHc
Confidence 34443 4568899999999999999999998887753 32333 35666442 22222221 12 1111
Q ss_pred CCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHH
Q 022155 97 RPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGM 176 (302)
Q Consensus 97 ~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~ 176 (302)
.. ...+++ .... .+.-+ ...+.-...++. +++++++|+.++-+. ...+ ..+.+.
T Consensus 86 gl---~~~~~~-~~~~-LS~G~-~qrl~laral~~-------~p~llllDEP~~~LD---------~~~~----~~~~~~ 139 (180)
T cd03214 86 GL---AHLADR-PFNE-LSGGE-RQRVLLARALAQ-------EPPILLLDEPTSHLD---------IAHQ----IELLEL 139 (180)
T ss_pred CC---HhHhcC-Cccc-CCHHH-HHHHHHHHHHhc-------CCCEEEEeCCccCCC---------HHHH----HHHHHH
Confidence 11 011111 0111 12111 112222233442 459999999887542 1222 355666
Q ss_pred HHHHHHHcCcEEEEEecccc
Q 022155 177 LKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 177 L~~la~~~~~~viv~n~~~~ 196 (302)
|++++++++.++|++.|-.+
T Consensus 140 l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 140 LRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHhcCCEEEEEeCCHH
Confidence 77776666889999988754
No 97
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.63 E-value=1.8e-06 Score=73.54 Aligned_cols=124 Identities=16% Similarity=0.167 Sum_probs=72.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHH
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVD 117 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~ 117 (302)
...+.|+|+||+|||++|.+++ + +.+.++.+... .++ . .....+-+.+-.....+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~---------~----~~~~~~~d~~~--~~l---~-------g~~~~~v~~~d~~~~~~ 66 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP---------G----KTLVLSFDMSS--KVL---I-------GDENVDIADHDDMPPIQ 66 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC---------C----CCEEEeccccc--hhc---c-------CCCCCceeecCCCCCHH
Confidence 4679999999999999997662 1 46777777532 111 0 00011112222344556
Q ss_pred HHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccC-----CC-----hhhHHHHHHHHHHHHHHHHHHHHHcCcE
Q 022155 118 QLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFD-----NT-----MDDLKKRSFLFFKISGMLKAMAVGFGLA 187 (302)
Q Consensus 118 ~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~-----~~-----~~~~~~r~~~l~~l~~~L~~la~~~~~~ 187 (302)
++.+.+..++... .+.+.||||+++.+...-+. +. ..+.... -..+++.|+.|.. .+..
T Consensus 67 ~~~d~l~~~~~~~-------~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~---~~~fl~~l~~L~~-~g~n 135 (220)
T TIGR01618 67 AMVEFYVMQNIQA-------VKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKL---DLWFLDLLTVLKE-SNKN 135 (220)
T ss_pred HHHHHHHHHHhcc-------ccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHH---HHHHHHHHHHHHh-CCCc
Confidence 6666665443332 35799999999997652211 00 1122221 2245666777654 8999
Q ss_pred EEEEeccccc
Q 022155 188 VLVTNQVVDL 197 (302)
Q Consensus 188 viv~n~~~~~ 197 (302)
||+|.|....
T Consensus 136 II~tAhe~~~ 145 (220)
T TIGR01618 136 IYATAWELTN 145 (220)
T ss_pred EEEEEeeccc
Confidence 9999998654
No 98
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.63 E-value=3.9e-07 Score=70.97 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=33.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFP 85 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~ 85 (302)
+..+.|+||||+|||+++..++.... ..+ ..++|++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~---~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPG---GGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCC---CCEEEECCEEccc
Confidence 67899999999999999999988763 221 1589999886543
No 99
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=2e-07 Score=77.19 Aligned_cols=140 Identities=17% Similarity=0.257 Sum_probs=75.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC--CC--HHHHH-HHHHHhCCC-
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP--FP--MRRLH-QLSHTFRPS- 99 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~--~~--~~rl~-~i~~~~~~~- 99 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++... +...| -++++.... .+ ..... .+...++..
T Consensus 15 ~l~~i-~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G-----~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (178)
T cd03229 15 VLNDV-SLNIEAGEIVALLGPSGSGKSTLLRCIAGLE--EPDSG-----SILIDGEDLTDLEDELPPLRRRIGMVFQDFA 86 (178)
T ss_pred EEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCce-----EEEECCEEccccchhHHHHhhcEEEEecCCc
Confidence 34443 4568899999999999999999999887653 32333 366654321 11 11111 111001100
Q ss_pred -C-CCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHH
Q 022155 100 -N-DHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGML 177 (302)
Q Consensus 100 -~-~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L 177 (302)
. .....+++... .+.-+ ...+.-...++. +++++++|+..+-+ |...+ ..+...|
T Consensus 87 ~~~~~t~~~~l~~~--lS~G~-~qr~~la~al~~-------~p~llilDEP~~~L---------D~~~~----~~l~~~l 143 (178)
T cd03229 87 LFPHLTVLENIALG--LSGGQ-QQRVALARALAM-------DPDVLLLDEPTSAL---------DPITR----REVRALL 143 (178)
T ss_pred cCCCCCHHHheeec--CCHHH-HHHHHHHHHHHC-------CCCEEEEeCCcccC---------CHHHH----HHHHHHH
Confidence 0 00122222221 11111 111222233332 45999999988754 22222 3556777
Q ss_pred HHHHHHcCcEEEEEecccc
Q 022155 178 KAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 178 ~~la~~~~~~viv~n~~~~ 196 (302)
++++++++.++|+++|-..
T Consensus 144 ~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 144 KSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred HHHHHhcCCEEEEEeCCHH
Confidence 7777766899999998654
No 100
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.62 E-value=6e-07 Score=73.66 Aligned_cols=92 Identities=17% Similarity=0.253 Sum_probs=56.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHH
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQ 118 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~ 118 (302)
.++.|.|+||||||++|.+++... +. +++|+.|...++.+..+++...... .+ +.......+ .+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~------~~---~~~~iat~~~~~~e~~~ri~~h~~~-R~----~~w~t~E~~--~~ 65 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS------GL---QVLYIATAQPFDDEMAARIAHHRQR-RP----AHWQTVEEP--LD 65 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc------CC---CcEeCcCCCCChHHHHHHHHHHHhc-CC----CCCeEeccc--cc
Confidence 578999999999999999997653 22 6899999877776554555443221 11 122222221 12
Q ss_pred HHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhcc
Q 022155 119 LLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDF 156 (302)
Q Consensus 119 l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~ 156 (302)
+..++ .... .+.++|+||+++.+....+
T Consensus 66 l~~~i---~~~~-------~~~~~VlID~Lt~~~~n~l 93 (170)
T PRK05800 66 LAELL---RADA-------APGRCVLVDCLTTWVTNLL 93 (170)
T ss_pred HHHHH---Hhhc-------CCCCEEEehhHHHHHHHHh
Confidence 32222 2222 1247899999999875443
No 101
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.59 E-value=9.9e-07 Score=71.94 Aligned_cols=127 Identities=16% Similarity=0.216 Sum_probs=72.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC--CCHHHHHHHHHHhCCCCCCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP--FPMRRLHQLSHTFRPSNDHN 103 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~--~~~~rl~~i~~~~~~~~~~~ 103 (302)
.|+.+ +--+++|+++.|.|++|+|||||+..++... ++..| .++++.... .+... ..
T Consensus 15 vl~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G-----~v~~~g~~~~~~~~~~---~~---------- 73 (163)
T cd03216 15 ALDGV-SLSVRRGEVHALLGENGAGKSTLMKILSGLY--KPDSG-----EILVDGKEVSFASPRD---AR---------- 73 (163)
T ss_pred EEeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCe-----EEEECCEECCcCCHHH---HH----------
Confidence 34443 4468999999999999999999999887764 32333 466665421 11110 00
Q ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 022155 104 PCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVG 183 (302)
Q Consensus 104 ~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~ 183 (302)
..++.+...-+.-+. ..+.-...++. +++++++|+..+-+ |...+ ..+...|+++++
T Consensus 74 -~~~i~~~~qLS~G~~-qrl~laral~~-------~p~illlDEP~~~L---------D~~~~----~~l~~~l~~~~~- 130 (163)
T cd03216 74 -RAGIAMVYQLSVGER-QMVEIARALAR-------NARLLILDEPTAAL---------TPAEV----ERLFKVIRRLRA- 130 (163)
T ss_pred -hcCeEEEEecCHHHH-HHHHHHHHHhc-------CCCEEEEECCCcCC---------CHHHH----HHHHHHHHHHHH-
Confidence 012222221222221 12222233442 45999999988744 22222 355666777654
Q ss_pred cCcEEEEEecccc
Q 022155 184 FGLAVLVTNQVVD 196 (302)
Q Consensus 184 ~~~~viv~n~~~~ 196 (302)
.+.++|++.|...
T Consensus 131 ~~~tiii~sh~~~ 143 (163)
T cd03216 131 QGVAVIFISHRLD 143 (163)
T ss_pred CCCEEEEEeCCHH
Confidence 4889999988754
No 102
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.59 E-value=1.4e-07 Score=88.55 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=52.8
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
..+++.+.-.+.++ |+..||.+ +--+.+|++..|+|++|+|||||+.-++..+. +.. .-++++.+.
T Consensus 6 ~~ll~~~~i~K~Fg-gV~AL~~v-~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~----G~I~~~G~~ 71 (500)
T COG1129 6 PPLLELRGISKSFG-GVKALDGV-SLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDS----GEILIDGKP 71 (500)
T ss_pred cceeeeecceEEcC-Cceeeccc-eeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCC----ceEEECCEE
Confidence 34777777777777 88999987 66899999999999999999999998888753 223 358888664
No 103
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.58 E-value=2.2e-07 Score=75.44 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=34.0
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
--++.|+++.|.||+|+|||||+.-+|... .| .. ..++|..++
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~P-~~-----G~i~i~g~d 62 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFE-TP-AS-----GEILINGVD 62 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhcc-CC-CC-----ceEEEcCee
Confidence 368999999999999999999997777765 33 23 358887765
No 104
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.56 E-value=4.1e-07 Score=79.88 Aligned_cols=140 Identities=14% Similarity=0.208 Sum_probs=79.6
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHH-----HHHHHHhCCCC---CCC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRL-----HQLSHTFRPSN---DHN 103 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl-----~~i~~~~~~~~---~~~ 103 (302)
-++.|+|..|.|-+|||||||..++-... ++..| -+++++++ ..+...| +.+...|+.+. -.+
T Consensus 50 ~v~~GeIfViMGLSGSGKSTLvR~~NrLi--ept~G-----~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 50 DVEEGEIFVIMGLSGSGKSTLVRLLNRLI--EPTRG-----EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eecCCeEEEEEecCCCCHHHHHHHHhccC--CCCCc-----eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 58899999999999999999998886653 33444 37788775 3344333 33444444322 236
Q ss_pred CCCcEEEE-eCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHH----------
Q 022155 104 PCDYIFVQ-SVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLF---------- 170 (302)
Q Consensus 104 ~l~~i~~~-~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l---------- 170 (302)
+++|+-+- ... ..++- -....+.+ .+|=++.....|..++++++ +||.-+.
T Consensus 123 Vl~Nv~fGLev~Gv~~~er---~~~a~~~l----------~~VgL~~~~~~yp~eLSGGM---qQRVGLARAla~~~~Il 186 (386)
T COG4175 123 VLENVAFGLEVQGVPKAER---EERALEAL----------ELVGLEGYADKYPNELSGGM---QQRVGLARALANDPDIL 186 (386)
T ss_pred HhhhhhcceeecCCCHHHH---HHHHHHHH----------HHcCchhhhhcCcccccchH---HHHHHHHHHHccCCCEE
Confidence 77776552 221 11111 11122222 22333444444555554432 3332221
Q ss_pred --------------HHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 171 --------------FKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 171 --------------~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
.++-..|.+|.++++-|||+++|.-+
T Consensus 187 LMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 187 LMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 23445577888999999999999643
No 105
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.55 E-value=1.6e-07 Score=85.64 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=37.4
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
..|+.+ +--+++|+++.|.|++|||||||+..++... ++..| .++++.+.
T Consensus 19 ~~L~~v-sl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~--~p~~G-----~I~i~G~~ 68 (343)
T TIGR02314 19 QALNNV-SLHVPAGQIYGVIGASGAGKSTLIRCVNLLE--RPTSG-----SVIVDGQD 68 (343)
T ss_pred EEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCce-----EEEECCEE
Confidence 356665 5578999999999999999999999887754 32333 46676653
No 106
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.55 E-value=2.2e-07 Score=76.48 Aligned_cols=136 Identities=14% Similarity=0.142 Sum_probs=72.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC--CCHHHHH-HHHHHhCCC--C
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP--FPMRRLH-QLSHTFRPS--N 100 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~--~~~~rl~-~i~~~~~~~--~ 100 (302)
.++.+ +--+++|+++.|+||+|+|||||+..++... ++..| -++++.+.. .+..++. .++..++.. .
T Consensus 17 ~l~~~-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G-----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (173)
T cd03246 17 VLRNV-SFSIEPGESLAIIGPSGSGKSTLARLILGLL--RPTSG-----RVRLDGADISQWDPNELGDHVGYLPQDDELF 88 (173)
T ss_pred ceeee-EEEECCCCEEEEECCCCCCHHHHHHHHHhcc--CCCCC-----eEEECCEEcccCCHHHHHhheEEECCCCccc
Confidence 34443 4468899999999999999999999888764 32333 355665421 2222221 111111100 0
Q ss_pred CCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHH
Q 022155 101 DHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAM 180 (302)
Q Consensus 101 ~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~l 180 (302)
+..+.+++ .+.-+ ...+.-...++. +++++++|+.++-. |...+ ..+...|+++
T Consensus 89 ~~tv~~~l-----LS~G~-~qrv~la~al~~-------~p~~lllDEPt~~L---------D~~~~----~~l~~~l~~~ 142 (173)
T cd03246 89 SGSIAENI-----LSGGQ-RQRLGLARALYG-------NPRILVLDEPNSHL---------DVEGE----RALNQAIAAL 142 (173)
T ss_pred cCcHHHHC-----cCHHH-HHHHHHHHHHhc-------CCCEEEEECCcccc---------CHHHH----HHHHHHHHHH
Confidence 00111111 11111 111222223332 45999999998854 22232 2455666666
Q ss_pred HHHcCcEEEEEecccc
Q 022155 181 AVGFGLAVLVTNQVVD 196 (302)
Q Consensus 181 a~~~~~~viv~n~~~~ 196 (302)
++ .+.++|++.|-..
T Consensus 143 ~~-~~~tii~~sh~~~ 157 (173)
T cd03246 143 KA-AGATRIVIAHRPE 157 (173)
T ss_pred Hh-CCCEEEEEeCCHH
Confidence 54 4889999988643
No 107
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.53 E-value=2.6e-07 Score=87.42 Aligned_cols=38 Identities=26% Similarity=0.241 Sum_probs=31.4
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
...+|++ +--+.+|+++.|+|+|||||||++..++...
T Consensus 304 ~~Av~~V-Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 304 VKAVDDV-SFDLREGETLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred eeeeeee-eeEecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456665 4578999999999999999999999888764
No 108
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.53 E-value=1e-06 Score=76.00 Aligned_cols=147 Identities=19% Similarity=0.266 Sum_probs=81.5
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH--HHHHHHHHhCCCCC-C---CCC
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR--RLHQLSHTFRPSND-H---NPC 105 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~--rl~~i~~~~~~~~~-~---~~l 105 (302)
+--||+|+++.+.|++|+||||++..+.... +| .+| .+-+.+-.+|+.. .++++...+..... . ..+
T Consensus 44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll-~p--~~G----~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLL-LP--TSG----KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred eeecCCCcEEEEEcCCCCcchhhHHHHhCcc-cc--CCC----eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 3579999999999999999999998887765 44 333 4666666677642 24455443321110 0 011
Q ss_pred CcEE----EEeCCCHHHHHHHHHHHHHH------HHhc---------------cCCCCCeeEEEEechhhhhhhccCCCh
Q 022155 106 DYIF----VQSVHSVDQLLDIMPKIESF------IKNS---------------SNSRLPIRLIVIDSIAALFRSDFDNTM 160 (302)
Q Consensus 106 ~~i~----~~~~~~~~~l~~~l~~l~~~------l~~~---------------~~~~~~~~lvVIDsi~~~~~~~~~~~~ 160 (302)
+.+. ++++.+ +++.+.+..+-++ +... +.--++++++++|..+-=.
T Consensus 117 ds~~v~~~Iy~Ipd-~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL-------- 187 (325)
T COG4586 117 DSLEVLKLIYEIPD-DEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL-------- 187 (325)
T ss_pred hhHHHHHHHHhCCH-HHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCc--------
Confidence 1110 011111 1111111110000 0000 0002356999999987522
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCC
Q 022155 161 DDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLME 199 (302)
Q Consensus 161 ~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~ 199 (302)
|...+ ..+.+.|+....++++||++|+|..+.+.
T Consensus 188 -DV~aq----~~ir~Flke~n~~~~aTVllTTH~~~di~ 221 (325)
T COG4586 188 -DVNAQ----ANIREFLKEYNEERQATVLLTTHIFDDIA 221 (325)
T ss_pred -chhHH----HHHHHHHHHHHHhhCceEEEEecchhhHH
Confidence 22222 25567788999999999999999876543
No 109
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.51 E-value=2.4e-06 Score=75.31 Aligned_cols=126 Identities=15% Similarity=0.216 Sum_probs=81.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH-HHHHHHhCCCCCCCCCCcEEEEeCCCHH
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL-HQLSHTFRPSNDHNPCDYIFVQSVHSVD 117 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl-~~i~~~~~~~~~~~~l~~i~~~~~~~~~ 117 (302)
....|+|+++.|||+++..++...--....+.....|+++.+-...+..++ ..|+..+.... ..-.+..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~----------~~~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY----------RPRDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc----------CCCCCHH
Confidence 358999999999999999999864211111222347999998766666666 45555433111 1112222
Q ss_pred HHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEec
Q 022155 118 QLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQ 193 (302)
Q Consensus 118 ~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~ 193 (302)
.+ ..++..++.. .+++++|||++..+..+. ..++ +++++.||.|+.+.++++|++.-
T Consensus 132 ~~---~~~~~~llr~-----~~vrmLIIDE~H~lLaGs------~~~q-----r~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 132 KL---EQQVLRLLRR-----LGVRMLIIDEFHNLLAGS------YRKQ-----REFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred HH---HHHHHHHHHH-----cCCcEEEeechHHHhccc------HHHH-----HHHHHHHHHHhhccCCCeEEecc
Confidence 22 2233345543 578999999998876543 1133 37889999999999999999864
No 110
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=6.7e-08 Score=86.02 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=36.8
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
-..|+.+ +--|.+|+++.|+|++|+|||||+..++... ++..| -++++..
T Consensus 19 ~~~l~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~--~p~~G-----~i~i~g~ 68 (283)
T PRK13636 19 THALKGI-NINIKKGEVTAILGGNGAGKSTLFQNLNGIL--KPSSG-----RILFDGK 68 (283)
T ss_pred Ceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcc-----EEEECCE
Confidence 3456654 4578999999999999999999999887764 32333 3566654
No 111
>PRK04296 thymidine kinase; Provisional
Probab=98.51 E-value=9.7e-07 Score=73.87 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=65.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC--CCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT--EFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHS 115 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~--e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~ 115 (302)
|.++.++||+|+||||+++.++..+. ..|. +|+++.. +.... ...+...+. ..+..+ ....
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~---~~g~---~v~i~k~~~d~~~~---~~~i~~~lg-----~~~~~~---~~~~ 64 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE---ERGM---KVLVFKPAIDDRYG---EGKVVSRIG-----LSREAI---PVSS 64 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH---HcCC---eEEEEecccccccc---CCcEecCCC-----Ccccce---EeCC
Confidence 78999999999999999999998874 3444 7888843 21110 111221111 001111 1233
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeccc
Q 022155 116 VDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVV 195 (302)
Q Consensus 116 ~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~ 195 (302)
..++...+ .+ . ..++++||||+++.+-. . ++.. |.+.++..+++||++....
T Consensus 65 ~~~~~~~~---~~--~-----~~~~dvviIDEaq~l~~----------~-------~v~~-l~~~l~~~g~~vi~tgl~~ 116 (190)
T PRK04296 65 DTDIFELI---EE--E-----GEKIDCVLIDEAQFLDK----------E-------QVVQ-LAEVLDDLGIPVICYGLDT 116 (190)
T ss_pred hHHHHHHH---Hh--h-----CCCCCEEEEEccccCCH----------H-------HHHH-HHHHHHHcCCeEEEEecCc
Confidence 33433332 22 1 24679999999965210 1 1222 2333456899999998876
Q ss_pred cc
Q 022155 196 DL 197 (302)
Q Consensus 196 ~~ 197 (302)
+-
T Consensus 117 ~~ 118 (190)
T PRK04296 117 DF 118 (190)
T ss_pred cc
Confidence 53
No 112
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.50 E-value=1e-07 Score=81.46 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=30.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 19 il~~~-s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 19 ALKGV-SLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEeee-EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45554 4578999999999999999999999888753
No 113
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=3e-07 Score=79.80 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 16 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 16 ALKDV-SLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45544 4568999999999999999999999888753
No 114
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.4e-07 Score=86.63 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=36.2
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
..|+.+ +--+++|+++.|.||+|||||||+..++... ++..| -++++.+
T Consensus 18 ~~l~~v-sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~--~p~~G-----~I~~~g~ 66 (356)
T PRK11650 18 QVIKGI-DLDVADGEFIVLVGPSGCGKSTLLRMVAGLE--RITSG-----EIWIGGR 66 (356)
T ss_pred EEEeee-eEEEcCCCEEEEECCCCCcHHHHHHHHHCCC--CCCce-----EEEECCE
Confidence 345554 4568899999999999999999999888764 22333 4666654
No 115
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=2.6e-07 Score=82.03 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=36.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--|.+|+++.|+|++|||||||+..++... ++..| .++++..
T Consensus 22 ~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G-----~i~~~g~ 69 (279)
T PRK13650 22 TLNDV-SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL--EAESG-----QIIIDGD 69 (279)
T ss_pred eeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCc-----EEEECCE
Confidence 56655 5578999999999999999999999887764 32333 4666654
No 116
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=9.6e-07 Score=72.72 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=72.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH-HHHHH-HHHHhCCCC--C
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM-RRLHQ-LSHTFRPSN--D 101 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~-~rl~~-i~~~~~~~~--~ 101 (302)
.|+.+ +--+.+|+++.|+|++|+|||||+..++... ++..| -++++.+..... .++++ ++..++... +
T Consensus 15 ~l~~~-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G-----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 86 (173)
T cd03230 15 ALDDI-SLTVEKGEIYGLLGPNGAGKTTLIKIILGLL--KPDSG-----EIKVLGKDIKKEPEEVKRRIGYLPEEPSLYE 86 (173)
T ss_pred eeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCe-----EEEECCEEcccchHhhhccEEEEecCCcccc
Confidence 34443 4468899999999999999999998887753 32333 356665421111 11110 100000000 0
Q ss_pred -CCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHH
Q 022155 102 -HNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAM 180 (302)
Q Consensus 102 -~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~l 180 (302)
....+++. -+.-+. ..+.-...++ .+++++++|+.++-. |...+ ..+.+.|+++
T Consensus 87 ~~tv~~~~~----LS~G~~-qrv~laral~-------~~p~illlDEPt~~L---------D~~~~----~~l~~~l~~~ 141 (173)
T cd03230 87 NLTVRENLK----LSGGMK-QRLALAQALL-------HDPELLILDEPTSGL---------DPESR----REFWELLREL 141 (173)
T ss_pred CCcHHHHhh----cCHHHH-HHHHHHHHHH-------cCCCEEEEeCCccCC---------CHHHH----HHHHHHHHHH
Confidence 01111111 111111 1111222333 245999999998854 22222 3566777777
Q ss_pred HHHcCcEEEEEecccc
Q 022155 181 AVGFGLAVLVTNQVVD 196 (302)
Q Consensus 181 a~~~~~~viv~n~~~~ 196 (302)
+++ +.++|+++|-..
T Consensus 142 ~~~-g~tiii~th~~~ 156 (173)
T cd03230 142 KKE-GKTILLSSHILE 156 (173)
T ss_pred HHC-CCEEEEECCCHH
Confidence 765 889999988643
No 117
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.49 E-value=4.8e-07 Score=74.71 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=65.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
-+++|+++.|.||+|+|||||+..++... ++..| . ++++... +. +.. +...
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G----~-i~~~g~~---------i~--~~~-------q~~~---- 71 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL--IPNGD----N-DEWDGIT---------PV--YKP-------QYID---- 71 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC--CCCCc----E-EEECCEE---------EE--EEc-------ccCC----
Confidence 57899999999999999999998887764 32333 3 4554321 00 000 0000
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEec
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQ 193 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~ 193 (302)
-+.-+ ...+.-...++. +++++++|+.++-+. ...+ ..+...|++++++.+.++|++.|
T Consensus 72 LSgGq-~qrv~laral~~-------~p~lllLDEPts~LD---------~~~~----~~l~~~l~~~~~~~~~tiiivsH 130 (177)
T cd03222 72 LSGGE-LQRVAIAAALLR-------NATFYLFDEPSAYLD---------IEQR----LNAARAIRRLSEEGKKTALVVEH 130 (177)
T ss_pred CCHHH-HHHHHHHHHHhc-------CCCEEEEECCcccCC---------HHHH----HHHHHHHHHHHHcCCCEEEEEEC
Confidence 12121 112222233332 359999999887542 2222 24556666666655589999998
Q ss_pred ccc
Q 022155 194 VVD 196 (302)
Q Consensus 194 ~~~ 196 (302)
...
T Consensus 131 ~~~ 133 (177)
T cd03222 131 DLA 133 (177)
T ss_pred CHH
Confidence 654
No 118
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=2.9e-07 Score=78.22 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=27.1
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+--+.+|+++.|.||+|+|||||+..++...
T Consensus 18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999998887664
No 119
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=2.2e-07 Score=82.48 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=30.9
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--|.+|+++.|.|++|+|||||+..++...
T Consensus 21 ~~l~~v-sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 21 YALKDV-SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred cceeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356654 5578999999999999999999998887664
No 120
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=1.1e-07 Score=81.02 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 15 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 15 ALDDL-SLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eecce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45544 4568999999999999999999998887653
No 121
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=2.3e-06 Score=73.80 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+||+|||||||+..++...
T Consensus 20 il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 20 ALKDV-SLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568999999999999999999999887764
No 122
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.47 E-value=2.1e-07 Score=79.71 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=29.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 15 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 15 ILFGV-SLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred Eeeee-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 44544 4578999999999999999999998877653
No 123
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=2.1e-07 Score=83.02 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=31.7
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +.-|.+|+++.|.|++|||||||+..++...
T Consensus 21 ~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 21 QAIHDV-NTEFEQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred Cceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466666 5678999999999999999999999888754
No 124
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=3.8e-07 Score=81.12 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=30.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+||+|+|||||+..++...
T Consensus 22 ~l~~v-~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 22 ALNDI-SFSIPRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred ceeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 45554 5578999999999999999999999888764
No 125
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.46 E-value=6.5e-07 Score=75.76 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 15 ~l~~v-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 15 ILDDL-SLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred eeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45544 4468899999999999999999998887753
No 126
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.3e-07 Score=83.98 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=30.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.|++|+|||||+..++...
T Consensus 19 ~l~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 19 ALNNI-NFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred eeeEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45554 4568999999999999999999999888764
No 127
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.45 E-value=3e-07 Score=80.42 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=30.5
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+|++ .--|+.|+++.+.||+||||||++..||...
T Consensus 16 ~a~~di-~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 16 GALDDI-SLDIKSGELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred cccccc-eeeecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence 345544 4468999999999999999999999888764
No 128
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=3.2e-07 Score=79.38 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 15 ~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 15 VLKGV-DLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45544 4468999999999999999999998888653
No 129
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.45 E-value=1.3e-07 Score=80.51 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|+|||||+..++...
T Consensus 15 ~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 15 ALDDL-NLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred eeece-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45544 4468899999999999999999998888764
No 130
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=1.2e-07 Score=83.90 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=30.6
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--|.+|+++.|.|++|||||||+..++...
T Consensus 19 ~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 19 KALKGL-SLSIPEGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred eeeeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 355554 4568999999999999999999998887754
No 131
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=2.9e-07 Score=78.80 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ .--+.+|+++.|.|++|||||||+..++...
T Consensus 15 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 15 AVRGV-SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred eeece-eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44444 4568899999999999999999999887753
No 132
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.44 E-value=3.8e-06 Score=72.96 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+||+|||||||+..++...
T Consensus 17 il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 17 ALKNI-NLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred eeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45554 4568999999999999999999998887653
No 133
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.44 E-value=1.8e-07 Score=80.50 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|+|||||+..++...
T Consensus 25 ~l~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 25 ILTGV-ELVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEecc-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45554 4568899999999999999999999888764
No 134
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.44 E-value=4.6e-07 Score=78.94 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=27.1
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|-+.+|+++.|.||+|+|||||+..++...
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999998887653
No 135
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.44 E-value=1.9e-07 Score=80.01 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=30.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 20 ~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 20 VLKGV-SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred eEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4578999999999999999999999888764
No 136
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.44 E-value=1.8e-06 Score=78.33 Aligned_cols=136 Identities=18% Similarity=0.247 Sum_probs=78.9
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHHHHHh----C----CCCCC
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQLSHTF----R----PSNDH 102 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i~~~~----~----~~~~~ 102 (302)
--+++|+.+.|+|++|||||||.+.+.... + ..| -++|+++. .++...++-+-..+ + ..+|.
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allrL~--~-s~G-----~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLI--P-SQG-----EIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHhhc--C-cCc-----eEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 368899999999999999999999988764 3 334 36666553 23333333222222 1 11121
Q ss_pred -----CCCCcEEEEeC-CCHHHH----HHHHHH-------------------------HHHHHHhccCCCCCeeEEEEec
Q 022155 103 -----NPCDYIFVQSV-HSVDQL----LDIMPK-------------------------IESFIKNSSNSRLPIRLIVIDS 147 (302)
Q Consensus 103 -----~~l~~i~~~~~-~~~~~l----~~~l~~-------------------------l~~~l~~~~~~~~~~~lvVIDs 147 (302)
.+-+.+.+..+ .+..+- .+.+.+ .+.++ .++++|++|.
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAli-------LkP~~i~LDE 452 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALI-------LKPELILLDE 452 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHh-------cCCcEEEecC
Confidence 11122333221 111111 111111 11222 2359999999
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 148 IAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 148 i~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
.++.+. ..- -.+++..|++|.++|+++.++++|.-.
T Consensus 453 PTSALD---------~SV----QaQvv~LLr~LQ~k~~LsYLFISHDL~ 488 (534)
T COG4172 453 PTSALD---------RSV----QAQVLDLLRDLQQKHGLSYLFISHDLA 488 (534)
T ss_pred CchHhh---------HHH----HHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 887542 111 237789999999999999999999654
No 137
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=8.7e-08 Score=82.04 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 19 il~~v-s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 19 ALEDI-SLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEece-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568899999999999999999998887653
No 138
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.43 E-value=7.4e-07 Score=75.86 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+||+|||||||+..++...
T Consensus 14 ~l~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 14 VLEDV-SFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred eeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45554 4578999999999999999999998887753
No 139
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.43 E-value=3.6e-06 Score=71.75 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 18 il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 18 ALDNL-NFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4578999999999999999999998888753
No 140
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.43 E-value=3.9e-07 Score=77.44 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=29.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 16 il~~v-s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 16 ALDDI-SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred eecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34443 4468899999999999999999998887753
No 141
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=2.6e-07 Score=80.11 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|+|||||+..++...
T Consensus 17 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 17 ALDDV-SLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444 4568899999999999999999999888754
No 142
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.42 E-value=2.3e-06 Score=74.82 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=29.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 19 vl~~v-s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 19 VLSDV-SLELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEeE-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34443 3468899999999999999999999887754
No 143
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=1.3e-06 Score=79.38 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=31.5
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..||.+ +--|.+|+++.|+|++|||||||+..++...
T Consensus 21 ~~l~~v-sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 21 RAVDRI-SYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred EEEeee-EEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 356665 5579999999999999999999999888754
No 144
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.42 E-value=3.4e-07 Score=79.24 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=29.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--|.+|+++.|.||+|||||||+..++...
T Consensus 16 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 16 ALDDV-SFTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34443 4468899999999999999999999888754
No 145
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.42 E-value=6.8e-07 Score=77.10 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.+|+++.|+|++|+|||||+..++...
T Consensus 7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998887764
No 146
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.42 E-value=4.1e-07 Score=83.44 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=27.1
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+--+++|+++.|.||+|||||||+..++...
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999999888754
No 147
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=5.1e-07 Score=80.26 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=36.9
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+.|+.+ +--|.+|+++.|+|++|+|||||+..++... +...| .++++.+
T Consensus 24 ~vl~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G-----~i~i~g~ 72 (280)
T PRK13633 24 LALDDV-NLEVKKGEFLVILGRNGSGKSTIAKHMNALL--IPSEG-----KVYVDGL 72 (280)
T ss_pred ceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCc-----eEEECCE
Confidence 356665 5678999999999999999999998888764 32333 4666654
No 148
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.41 E-value=1.7e-06 Score=72.68 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=30.0
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
+.|+.+ +--+.+|+++.|.||+|+|||||+..++..
T Consensus 23 ~~l~~~-~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 23 QLLKNV-SGKAKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cceecc-eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345554 456899999999999999999999888765
No 149
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.41 E-value=2e-06 Score=71.36 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=35.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+++.|.|++|+|||||+..++... ++..| -++++.+
T Consensus 15 ~l~~v-s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G-----~i~~~g~ 62 (182)
T cd03215 15 AVRDV-SFEVRAGEIVGIAGLVGNGQTELAEALFGLR--PPASG-----EITLDGK 62 (182)
T ss_pred eecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCc-----eEEECCE
Confidence 45544 4568999999999999999999998887764 32333 3666654
No 150
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.40 E-value=4.1e-07 Score=79.77 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=30.3
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 26 ~il~~i-sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 26 TVLNQL-DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred ceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345554 4568899999999999999999999888754
No 151
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=3.8e-07 Score=81.36 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=30.9
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--+.+|+++.|+|++|+|||||+..++...
T Consensus 21 ~~l~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~ 57 (287)
T PRK13637 21 KALDNV-NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred ceeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356655 5578999999999999999999999888753
No 152
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.40 E-value=3e-06 Score=71.66 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=29.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 13 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 13 ILDDL-NLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEece-EEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34443 4468899999999999999999998888754
No 153
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=2e-07 Score=81.66 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--|++|+++.|.||+|||||||+..++...
T Consensus 16 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 16 ALEDI-NLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eEeee-eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34544 4568999999999999999999998888753
No 154
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=2.3e-06 Score=71.64 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=35.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+.+|+++.|.||+|+|||||+..++.....+...| -++++.+
T Consensus 22 ~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G-----~i~~~g~ 71 (192)
T cd03232 22 LLNNI-SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITG-----EILINGR 71 (192)
T ss_pred eEEcc-EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcce-----EEEECCE
Confidence 45544 44688999999999999999999988876432222333 3666654
No 155
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.40 E-value=1.4e-06 Score=72.06 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=35.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+++.|.|++|+|||||+..++... ++..| .++++..
T Consensus 17 ~l~~i-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G-----~i~~~g~ 64 (178)
T cd03247 17 VLKNL-SLELKQGEKIALLGRSGSGKSTLLQLLTGDL--KPQQG-----EITLDGV 64 (178)
T ss_pred ceEEE-EEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCC-----EEEECCE
Confidence 45544 4578999999999999999999999988764 32333 3566654
No 156
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.39 E-value=5.9e-06 Score=67.55 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|||||||+..++...
T Consensus 16 ~l~~i-~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 16 LLKDL-SFEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred eeecC-eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34443 4568899999999999999999999887764
No 157
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.39 E-value=6.7e-07 Score=75.84 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=29.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|+|||||+..++...
T Consensus 15 ~l~~~-~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 15 VLDDI-SLHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred eEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 44444 4468899999999999999999999887753
No 158
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=3e-06 Score=77.52 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 20 il~~v-sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 20 ALNNV-SLHIPAGEIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45554 4578999999999999999999998887654
No 159
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=2.9e-06 Score=77.02 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=30.6
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--|.+|+++.|+|++|||||||+..++...
T Consensus 29 ~~l~~v-sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 29 KALDGV-SFTLERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred eEEeee-EEEECCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 456654 4568999999999999999999999887753
No 160
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=1.1e-06 Score=75.75 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=27.3
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+--+.+|+++.|+||+|||||||+..++...
T Consensus 19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468899999999999999999999887764
No 161
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.38 E-value=2.2e-07 Score=85.73 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 18 vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 18 ISKDI-NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34444 4468899999999999999999998888754
No 162
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.38 E-value=1.3e-05 Score=65.77 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=31.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
++.+.|+||+|||+++..++..+. ..|. ++++++++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~---~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGK---KVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCC---cEEEEEcCC
Confidence 688999999999999999998764 3454 799999874
No 163
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.38 E-value=3.4e-07 Score=78.00 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=27.5
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+--+.+|+++.|.||+|+|||||+..++...
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999999998764
No 164
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=3.2e-07 Score=81.96 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=31.4
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +.-|.+|+++.|.|++|+|||||+..++...
T Consensus 21 ~~L~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (290)
T PRK13634 21 RALYDV-NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL 57 (290)
T ss_pred cceeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356665 5678999999999999999999999888764
No 165
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.37 E-value=8.5e-06 Score=71.34 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|+|||||+..++...
T Consensus 18 il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 18 LVHGV-SLTLQRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred eecce-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44444 4468899999999999999999998887764
No 166
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=4.4e-06 Score=72.15 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=30.7
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 23 ~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 23 DVLHNV-SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred eeEEee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345554 4578999999999999999999999888753
No 167
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.37 E-value=2.1e-07 Score=83.68 Aligned_cols=38 Identities=18% Similarity=0.098 Sum_probs=32.0
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
...|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 20 ~~~l~~v-sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 20 KLVVDGL-SFHVQRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred eEEEecc-eEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3466666 5678999999999999999999999888754
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.37 E-value=3.4e-06 Score=65.59 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=67.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHH
Q 022155 41 TELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLL 120 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~ 120 (302)
+.|.||||+|||+++..++.... ..+++++...- . +. ........+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---------~~~~~i~~~~~---------~------------~~---~~~~~~~~i~ 47 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---------FPFIEIDGSEL---------I------------SS---YAGDSEQKIR 47 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---------SEEEEEETTHH---------H------------TS---STTHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---------ccccccccccc---------c------------cc---cccccccccc
Confidence 57999999999999999988752 16788886631 1 00 0001112222
Q ss_pred HHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHH-cCcEEEEEecccccC
Q 022155 121 DIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVG-FGLAVLVTNQVVDLM 198 (302)
Q Consensus 121 ~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~-~~~~viv~n~~~~~~ 198 (302)
.++.+ ... .....+++||.+..+.... .... . ......+..++..+...... .++.+|.+++..+.+
T Consensus 48 ~~~~~----~~~----~~~~~vl~iDe~d~l~~~~-~~~~-~-~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 48 DFFKK----AKK----SAKPCVLFIDEIDKLFPKS-QPSS-S-SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp HHHHH----HHH----TSTSEEEEEETGGGTSHHC-STSS-S-HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred ccccc----ccc----cccceeeeeccchhccccc-cccc-c-cccccccceeeecccccccccccceeEEeeCChhhC
Confidence 23322 222 1224999999999988654 2111 1 22333456677777666654 457888887765444
No 169
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.37 E-value=3e-06 Score=72.15 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 17 il~~i-s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 17 ALHDV-SLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4578999999999999999999998887653
No 170
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.37 E-value=5.2e-07 Score=81.06 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 8 ~l~~v-s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 8 AVDGV-NFKVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4578999999999999999999998887753
No 171
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.36 E-value=2.7e-07 Score=78.57 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 16 ~l~~~-sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 16 ALDGI-NISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44544 4568899999999999999999998888753
No 172
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=5.9e-07 Score=79.73 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=30.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+|++|+|||||+..++...
T Consensus 22 ~l~~v-~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 22 QLNGV-SFSITKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45555 4568899999999999999999999888764
No 173
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.36 E-value=3.7e-06 Score=76.47 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=36.2
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
..++.+ +--|.+|+++.|+|++|||||||+..++... +...| -++++++.
T Consensus 35 ~~l~~v-sl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~--~p~~G-----~I~~~G~~ 84 (331)
T PRK15079 35 KAVDGV-TLRLYEGETLGVVGESGCGKSTFARAIIGLV--KATDG-----EVAWLGKD 84 (331)
T ss_pred EEEeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHHCCC--CCCCc-----EEEECCEE
Confidence 345554 4468999999999999999999999888754 32333 35666553
No 174
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=1.1e-06 Score=76.87 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|+|||||+..++...
T Consensus 20 ~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 20 AVNNV-NLEVREQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred EEEee-eeEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 44444 4568899999999999999999999888764
No 175
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.36 E-value=4.2e-07 Score=83.44 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=36.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++... ++. . .-++|+.+.
T Consensus 8 ~l~~v-s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~--~p~-~----G~I~i~G~~ 56 (363)
T TIGR01186 8 GVNDA-DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI--EPT-A----GQIFIDGEN 56 (363)
T ss_pred eEEee-EEEEcCCCEEEEECCCCChHHHHHHHHhCCC--CCC-c----eEEEECCEE
Confidence 34443 4568999999999999999999999888764 323 3 246777653
No 176
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.36 E-value=2.3e-07 Score=82.00 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=29.1
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 40 l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 40 VNDV-SLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred eeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4443 4468899999999999999999999887764
No 177
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.36 E-value=8e-07 Score=81.49 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 17 ~l~~i-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 17 VLNDI-SLDIPSGQMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred EEEEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45544 4468899999999999999999999888864
No 178
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.36 E-value=1.3e-06 Score=75.17 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=30.9
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--+++|+++.|+||+|||||||+..++...
T Consensus 21 ~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 21 KILNNI-SFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred eeeecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356655 5578999999999999999999999887753
No 179
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.35 E-value=1.1e-07 Score=87.83 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..|+...
T Consensus 29 ~l~~v-sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 29 VISNL-DLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEeee-EEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35544 4468899999999999999999999888764
No 180
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.35 E-value=5.7e-07 Score=77.48 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+|++|||||||+..++...
T Consensus 15 ~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 15 ILRGV-SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred Eecce-eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4578999999999999999999998887754
No 181
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.35 E-value=1.2e-06 Score=80.97 Aligned_cols=43 Identities=28% Similarity=0.310 Sum_probs=33.1
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+--+++|+++.|.|++|||||||+..++... ++..| -++++.+
T Consensus 44 sf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~--~p~~G-----~I~idG~ 86 (382)
T TIGR03415 44 SLDIEEGEICVLMGLSGSGKSSLLRAVNGLN--PVSRG-----SVLVKDG 86 (382)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCc-----EEEECCE
Confidence 3468899999999999999999999888764 32333 3677753
No 182
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=4.8e-08 Score=89.36 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 21 ~l~~i-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 21 VIDNL-NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 45554 4568899999999999999999999888764
No 183
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.35 E-value=8.2e-06 Score=67.33 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.2
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHH
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLT 59 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la 59 (302)
|+.+ +--+++|+++.|.||+|||||||+..++
T Consensus 11 l~~i-sl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 11 LQNL-DVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred ecce-EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4443 4468999999999999999999997663
No 184
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.35 E-value=1.4e-06 Score=79.18 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=38.2
Q ss_pred cccCCCCCCcccc--C-ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 10 LLDNPLTTEKCTV--G-CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 10 l~~~~~~~~~i~t--G-~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+++.+.....+.+ | ...++.+ +--|.+|+++.|+|++|||||||+..++...
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~v-sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDL-NFSLRAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeee-EEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 5555555444433 2 3456665 5578999999999999999999999888764
No 185
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.35 E-value=3.5e-07 Score=79.13 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=29.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 15 ~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 15 ALDDV-SFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EecCc-eEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34444 4468899999999999999999998887753
No 186
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.34 E-value=2.9e-06 Score=71.60 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=29.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.|++|+|||||+..++...
T Consensus 15 ~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 15 LFSGL-SFTLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred eeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34443 3458899999999999999999998887753
No 187
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=1e-06 Score=77.86 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=35.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++... ++..| .++++..
T Consensus 24 ~l~~i-sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~--~~~~G-----~i~~~g~ 71 (269)
T PRK13648 24 TLKDV-SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE--KVKSG-----EIFYNNQ 71 (269)
T ss_pred ceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCce-----EEEECCE
Confidence 45554 4568999999999999999999998887764 32333 3666654
No 188
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.34 E-value=2e-06 Score=81.56 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=31.1
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..++++ +--+.+|+++.|+|++|||||++++.+....
T Consensus 23 ~~v~~v-sf~v~~GE~lgIvGESGsGKSt~a~~i~gll 59 (539)
T COG1123 23 PAVRDV-SFEVEPGEILGIVGESGSGKSTLALALMGLL 59 (539)
T ss_pred eeeecc-eEEecCCcEEEEEcCCCCCHHHHHHHHhccC
Confidence 356665 4578999999999999999999999888764
No 189
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.34 E-value=7.9e-07 Score=75.22 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.|++|+|||||+..++...
T Consensus 16 ~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 16 LFSGL-SFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEecc-eEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444 4568999999999999999999998887763
No 190
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=1.4e-06 Score=80.92 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=29.1
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 44 L~~i-sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~ 78 (400)
T PRK10070 44 VKDA-SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI 78 (400)
T ss_pred EEeE-EEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4443 4468999999999999999999999888764
No 191
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=9.7e-06 Score=65.54 Aligned_cols=123 Identities=17% Similarity=0.200 Sum_probs=70.0
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEE
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQ 111 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~ 111 (302)
+--+++|+++.|.|++|+|||||+..++... +...| -++++.+...... ..+.. ..+.+.
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~--~~~~G-----~i~~~~~~~~~~~-~~~~~------------~~i~~~ 78 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLL--KPTSG-----EILIDGKDIAKLP-LEELR------------RRIGYV 78 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCcc-----EEEECCEEcccCC-HHHHH------------hceEEE
Confidence 3458899999999999999999998887753 32333 4677765321100 00111 122221
Q ss_pred eCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Q 022155 112 SVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVT 191 (302)
Q Consensus 112 ~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~ 191 (302)
...+.-+. ..+.-...+.. +++++++|++..-+ |...+ ..+.+.|+.+... +.++|++
T Consensus 79 ~qlS~G~~-~r~~l~~~l~~-------~~~i~ilDEp~~~l---------D~~~~----~~l~~~l~~~~~~-~~tii~~ 136 (157)
T cd00267 79 PQLSGGQR-QRVALARALLL-------NPDLLLLDEPTSGL---------DPASR----ERLLELLRELAEE-GRTVIIV 136 (157)
T ss_pred eeCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCCcCC---------CHHHH----HHHHHHHHHHHHC-CCEEEEE
Confidence 11222221 11222223332 35999999988744 22222 2455666666554 7899999
Q ss_pred ecccc
Q 022155 192 NQVVD 196 (302)
Q Consensus 192 n~~~~ 196 (302)
.|...
T Consensus 137 sh~~~ 141 (157)
T cd00267 137 THDPE 141 (157)
T ss_pred eCCHH
Confidence 88754
No 192
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.33 E-value=2.5e-06 Score=68.73 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=34.6
Q ss_pred cccCCCCCCccccCChhhHhhhCC---CCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 10 LLDNPLTTEKCTVGCPIIDRCLGG---GIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 10 l~~~~~~~~~i~tG~~~LD~~L~G---Gl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.++.......+..+-..+.-+ .| -+.+|+.+.|+||+|||||||+.-+|..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL-~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL 59 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSIL-KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL 59 (228)
T ss_pred eeehhhhhhhhcCCCcceeEe-ecceEEecCCceEEEEcCCCCcHHhHHHHHhcC
Confidence 444444444445444444322 22 4789999999999999999999877764
No 193
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=2.8e-07 Score=79.78 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=26.5
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
--|.+|+++.|.|++|+|||||+..++...
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~ 49 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLETIAGFI 49 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999999998887753
No 194
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.33 E-value=1.8e-06 Score=86.26 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=53.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHHHH-HhCC--CC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQLSH-TFRP--SN 100 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i~~-~~~~--~~ 100 (302)
.|+.+ +--+++|+.+.|+|++|||||||+.-++..+. | ..| -+++|... ..+...+++... ..+. ..
T Consensus 468 vL~~i-sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p-~~G-----~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf 539 (686)
T TIGR03797 468 ILDDV-SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET-P-ESG-----SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM 539 (686)
T ss_pred ceeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-C-CCC-----EEEECCEEcCcCCHHHHHhccEEEccCCccC
Confidence 45544 45689999999999999999999988888753 2 333 47777653 334444433221 1111 11
Q ss_pred CCCCCCcEEEEeCCCHHHHHHHHH
Q 022155 101 DHNPCDYIFVQSVHSVDQLLDIMP 124 (302)
Q Consensus 101 ~~~~l~~i~~~~~~~~~~l~~~l~ 124 (302)
..+..+|+.+..+.+.+++.+.++
T Consensus 540 ~gTI~eNi~~~~~~~~e~i~~al~ 563 (686)
T TIGR03797 540 SGSIFENIAGGAPLTLDEAWEAAR 563 (686)
T ss_pred cccHHHHHhcCCCCCHHHHHHHHH
Confidence 123456666544445555554443
No 195
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=2.7e-06 Score=72.18 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=27.2
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+--+.+|+++.|.||+|||||||+..++...
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999888753
No 196
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.33 E-value=9.6e-07 Score=73.79 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=29.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 7 il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 7 VLKGL-NFAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred eecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444 4568999999999999999999998887653
No 197
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.33 E-value=9e-06 Score=64.85 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=27.3
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+--+.+|+++.|.|++|+|||||+..++...
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3468899999999999999999998887764
No 198
>PRK10908 cell division protein FtsE; Provisional
Probab=98.32 E-value=4.9e-07 Score=77.48 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|+|||||+..++...
T Consensus 17 ~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 17 ALQGV-TFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568999999999999999999999887653
No 199
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.32 E-value=2.2e-06 Score=71.45 Aligned_cols=153 Identities=15% Similarity=0.225 Sum_probs=85.6
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC----CCHHHH-HHHHHHhCC
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP----FPMRRL-HQLSHTFRP 98 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~----~~~~rl-~~i~~~~~~ 98 (302)
...|..+ +..|+++++|.|.||+|||||||+..+-+...+-+ +-.-..-+++++++- .+...+ ++++..|+.
T Consensus 20 ~~aL~~i-~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~--~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQk 96 (253)
T COG1117 20 KHALKDI-NLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP--GARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQK 96 (253)
T ss_pred hhhhccC-ceeccCCceEEEECCCCcCHHHHHHHHHhhcccCc--CceEEEEEEECCeeccCCCCCHHHHHHHheeeccC
Confidence 3456655 57899999999999999999999998866543221 100012355555543 334445 457777765
Q ss_pred CCC--CCCCCcEEEE----eCCCHHHHHHHHH----------HHHHHHHhc----------------cCCCCCeeEEEEe
Q 022155 99 SND--HNPCDYIFVQ----SVHSVDQLLDIMP----------KIESFIKNS----------------SNSRLPIRLIVID 146 (302)
Q Consensus 99 ~~~--~~~l~~i~~~----~~~~~~~l~~~l~----------~l~~~l~~~----------------~~~~~~~~lvVID 146 (302)
-+| ..+.+||-+. ...+ .++.+++. ++.+.+.+. ..+ -+++++..|
T Consensus 97 PnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA-v~PeVlLmD 174 (253)
T COG1117 97 PNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA-VKPEVLLMD 174 (253)
T ss_pred CCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh-cCCcEEEec
Confidence 543 3455666442 1222 33333322 222222211 112 234888999
Q ss_pred chhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 147 SIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 147 si~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
..++.+..- + ..+ +.+++..|+ .+.|||+++|-..
T Consensus 175 EPtSALDPI------s-T~k---IEeLi~eLk-----~~yTIviVTHnmq 209 (253)
T COG1117 175 EPTSALDPI------S-TLK---IEELITELK-----KKYTIVIVTHNMQ 209 (253)
T ss_pred CcccccCch------h-HHH---HHHHHHHHH-----hccEEEEEeCCHH
Confidence 888755221 0 111 455666665 4788888888543
No 200
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=1.1e-06 Score=77.48 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=30.6
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--+.+|+++.|+|++|||||||+..++...
T Consensus 25 ~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 25 TLLHPL-SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 345554 4578999999999999999999999887754
No 201
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.32 E-value=8.1e-07 Score=77.99 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+|++|||||||+..++...
T Consensus 17 il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 17 LLDDV-SLTLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred eeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35544 4568899999999999999999998888754
No 202
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.32 E-value=4.4e-07 Score=78.64 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=27.3
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+--+.+|+++.|+|++|+|||||+..++...
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 20 NLEVPTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999999988753
No 203
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.32 E-value=2e-06 Score=72.93 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.|++|+|||||+..++...
T Consensus 17 ~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 17 LFSGL-SFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568899999999999999999998887754
No 204
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.32 E-value=8.2e-07 Score=75.83 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.|++|||||||+..++...
T Consensus 20 il~~~-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 20 AVDGV-SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred eecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 45554 4568899999999999999999998887753
No 205
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.31 E-value=2.1e-06 Score=83.16 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=35.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+++ +--+++|+.+.|+||+|||||||+.-++... ++..| .+++|..
T Consensus 350 vL~~i-sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G-----~I~i~g~ 397 (529)
T TIGR02868 350 VLDGV-SLDLPPGERVAILGPSGSGKSTLLMLLTGLL--DPLQG-----EVTLDGV 397 (529)
T ss_pred eeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCc-----EEEECCE
Confidence 34444 4468999999999999999999998887764 22333 4777754
No 206
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=7.9e-07 Score=79.96 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=31.1
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--+.+|+++.|.|++|||||||+..++...
T Consensus 21 ~~l~~v-sl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 21 KALDNV-SVEINQGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred cceeee-EEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456664 5578999999999999999999999888764
No 207
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.31 E-value=7.4e-06 Score=74.38 Aligned_cols=55 Identities=22% Similarity=0.119 Sum_probs=38.7
Q ss_pred ccccccCCCCCCccccCC---hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGC---PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~---~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.+++.++..-.+.++- ..++.+ .--+.+|+.+.|+|++|||||..++.++...
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~i-sf~i~~GEtlAlVGESGSGKSvTa~sim~LL 60 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGI-SFDIEAGETLALVGESGSGKSVTALSILGLL 60 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccc-eeeecCCCEEEEEecCCCCccHHHHHHHHhc
Confidence 344666665555554432 223332 3468899999999999999999999998874
No 208
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.31 E-value=6.5e-07 Score=78.29 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--|.+|+++.|+||+|+|||||+..++...
T Consensus 15 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 15 VLDGL-NFSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444 4568999999999999999999999887654
No 209
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.31 E-value=2.9e-06 Score=83.26 Aligned_cols=145 Identities=18% Similarity=0.202 Sum_probs=82.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHHHHHhCCCC---
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQLSHTFRPSN--- 100 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i~~~~~~~~--- 100 (302)
.|+.+ +--+++|+.+.|+|++|||||||+..++... | ..| -++++... .++.+.+++... +..++
T Consensus 365 vL~~i-~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p-~~G-----~I~i~g~~i~~~~~~~lr~~i~-~v~Q~~~L 434 (588)
T PRK11174 365 LAGPL-NFTLPAGQRIALVGPSGAGKTSLLNALLGFL--P-YQG-----SLKINGIELRELDPESWRKHLS-WVGQNPQL 434 (588)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--C-CCc-----EEEECCEecccCCHHHHHhheE-EecCCCcC
Confidence 45544 4468999999999999999999998887764 4 344 46777542 344444443221 11111
Q ss_pred -CCCCCCcEEEEeC-CCHHHHHHHHHH--HHHHHHhc---------------------------cCCCCCeeEEEEechh
Q 022155 101 -DHNPCDYIFVQSV-HSVDQLLDIMPK--IESFIKNS---------------------------SNSRLPIRLIVIDSIA 149 (302)
Q Consensus 101 -~~~~l~~i~~~~~-~~~~~l~~~l~~--l~~~l~~~---------------------------~~~~~~~~lvVIDsi~ 149 (302)
..++.+|+.+... .+.+++.+.+.. +.+.+.+- +. -.+.+++++|+.+
T Consensus 435 F~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl-l~~~~IliLDE~T 513 (588)
T PRK11174 435 PHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL-LQPCQLLLLDEPT 513 (588)
T ss_pred CCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH-hcCCCEEEEeCCc
Confidence 2345677777543 455665555432 22222110 00 1235899999988
Q ss_pred hhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 150 ALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 150 ~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
+....+ .+ ..+.+.|+++. .+.|+|++.|-.+
T Consensus 514 SaLD~~--------te-----~~i~~~l~~~~--~~~TvIiItHrl~ 545 (588)
T PRK11174 514 ASLDAH--------SE-----QLVMQALNAAS--RRQTTLMVTHQLE 545 (588)
T ss_pred cCCCHH--------HH-----HHHHHHHHHHh--CCCEEEEEecChH
Confidence 755221 11 24445565554 4678888877543
No 210
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.1e-06 Score=73.25 Aligned_cols=136 Identities=15% Similarity=0.230 Sum_probs=84.8
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC-CCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF-PFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~-~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
|.-.+++.+-||||+|||+||..+|-...+. ..+.-.+...|.-.. ++-..++.
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR--~~~~y~~~~liEinshsLFSKWFs----------------------- 228 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIR--TNDRYYKGQLIEINSHSLFSKWFS----------------------- 228 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheee--ecCccccceEEEEehhHHHHHHHh-----------------------
Confidence 4567899999999999999999998876432 111111222222111 10011111
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh--hhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF--RSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVT 191 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~--~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~ 191 (302)
.+..-+..++.+|+++++. ....-.|.||.+-++. +.....+. +...-.+.+..++..|.++.+..|+-++.|
T Consensus 229 ESgKlV~kmF~kI~ELv~d----~~~lVfvLIDEVESLa~aR~s~~S~~-EpsDaIRvVNalLTQlDrlK~~~NvliL~T 303 (423)
T KOG0744|consen 229 ESGKLVAKMFQKIQELVED----RGNLVFVLIDEVESLAAARTSASSRN-EPSDAIRVVNALLTQLDRLKRYPNVLILAT 303 (423)
T ss_pred hhhhHHHHHHHHHHHHHhC----CCcEEEEEeHHHHHHHHHHHhhhcCC-CCchHHHHHHHHHHHHHHhccCCCEEEEec
Confidence 1222244566778888876 5677888899887764 22222211 122334457788899999999999999999
Q ss_pred ecccccCCC
Q 022155 192 NQVVDLMEP 200 (302)
Q Consensus 192 n~~~~~~~~ 200 (302)
....+.++.
T Consensus 304 SNl~~siD~ 312 (423)
T KOG0744|consen 304 SNLTDSIDV 312 (423)
T ss_pred cchHHHHHH
Confidence 998877654
No 211
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.31 E-value=1.9e-06 Score=75.87 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 19 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 19 ALHAV-DLNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEecc-eEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45544 4468899999999999999999999888764
No 212
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=6.2e-06 Score=75.05 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=30.8
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--|.+|+++.|+|++|||||||+..++...
T Consensus 21 ~~l~~v-sl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 21 KAVDRV-SMTLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEEeee-EEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 356655 4578999999999999999999999887753
No 213
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.30 E-value=7.2e-06 Score=72.44 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 22 il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 22 IFDNI-SLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568999999999999999999998887764
No 214
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.30 E-value=3.6e-06 Score=69.17 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=35.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++... +...| . ++++.+
T Consensus 17 ~l~~i-~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~--~~~~G----~-i~~~g~ 64 (171)
T cd03228 17 VLKDV-SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY--DPTSG----E-ILIDGV 64 (171)
T ss_pred cccce-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCC----E-EEECCE
Confidence 45554 4468999999999999999999998888764 32333 3 566654
No 215
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.30 E-value=9.9e-06 Score=69.82 Aligned_cols=29 Identities=34% Similarity=0.482 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.+|+++.|.||+|+|||||+..++...
T Consensus 8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999999888764
No 216
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.30 E-value=1.1e-06 Score=76.33 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|+|||||+..++...
T Consensus 16 ~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 16 AVNNL-NLEIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred Eeeee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34544 4578999999999999999999998887753
No 217
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.30 E-value=3.8e-06 Score=82.34 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=80.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHH-HHHHhCC--CC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQ-LSHTFRP--SN 100 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~-i~~~~~~--~~ 100 (302)
.|+.+ +--+++|+.+.|+|++|||||||+..++... ++..| .++++... .++.+.+++ ++-..+. ..
T Consensus 358 il~~i-~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~--~p~~G-----~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf 429 (582)
T PRK11176 358 ALRNI-NFKIPAGKTVALVGRSGSGKSTIANLLTRFY--DIDEG-----EILLDGHDLRDYTLASLRNQVALVSQNVHLF 429 (582)
T ss_pred cccCc-eEEeCCCCEEEEECCCCCCHHHHHHHHHhcc--CCCCc-----eEEECCEEhhhcCHHHHHhhceEEccCceee
Confidence 45544 4568999999999999999999999888875 32333 46777542 233333322 2211111 01
Q ss_pred CCCCCCcEEEEeC--CCHHHHHHHHHH--HHHHHHhc---------------------------cCCCCCeeEEEEechh
Q 022155 101 DHNPCDYIFVQSV--HSVDQLLDIMPK--IESFIKNS---------------------------SNSRLPIRLIVIDSIA 149 (302)
Q Consensus 101 ~~~~l~~i~~~~~--~~~~~l~~~l~~--l~~~l~~~---------------------------~~~~~~~~lvVIDsi~ 149 (302)
..++.+|+.+... .+.+++.+.+.. +.+++++- .. -.+.+++++|+.+
T Consensus 430 ~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal-l~~~~ililDEpt 508 (582)
T PRK11176 430 NDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL-LRDSPILILDEAT 508 (582)
T ss_pred cchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH-HhCCCEEEEECcc
Confidence 2234566665322 344555444432 12221110 00 1234889999988
Q ss_pred hhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 150 ALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 150 ~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
+....+ .+ ..+.+.|+++. .++|+|++.|-..
T Consensus 509 saLD~~--------t~-----~~i~~~l~~~~--~~~tvI~VtHr~~ 540 (582)
T PRK11176 509 SALDTE--------SE-----RAIQAALDELQ--KNRTSLVIAHRLS 540 (582)
T ss_pred ccCCHH--------HH-----HHHHHHHHHHh--CCCEEEEEecchH
Confidence 855221 11 24556666553 3789888888643
No 218
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.30 E-value=2.5e-06 Score=71.97 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=29.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.|+.+ +--+.+|+++.|.|++|+|||||+..++..
T Consensus 15 ~l~~i-s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 15 ILKGV-NLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eeecc-ceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44444 456889999999999999999999888775
No 219
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.30 E-value=1.1e-06 Score=75.83 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|||||||+..++...
T Consensus 15 ~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 15 VVNGV-SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eeccc-eeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45544 4468899999999999999999998887753
No 220
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.30 E-value=9.7e-06 Score=68.33 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=35.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+.+|+++.|.|++|+|||||+..++... ++..| -++++.+
T Consensus 16 il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G-----~v~~~g~ 63 (200)
T PRK13540 16 LLQQI-SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL--NPEKG-----EILFERQ 63 (200)
T ss_pred EEeee-eEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCe-----eEEECCC
Confidence 44444 4468899999999999999999998887753 32333 4667755
No 221
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.29 E-value=2.3e-06 Score=72.77 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 15 ~l~~~-s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 15 VLKGI-DLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred eecCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34443 4468899999999999999999999888764
No 222
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=1.2e-06 Score=77.50 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=31.1
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 23 ~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 23 NALKNV-SFEINEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred cceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456665 5678999999999999999999998887764
No 223
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.29 E-value=1.7e-05 Score=66.67 Aligned_cols=90 Identities=19% Similarity=0.303 Sum_probs=54.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH---HHHHHHHHHhCCCCCCCCCCcEEEEeCCC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM---RRLHQLSHTFRPSNDHNPCDYIFVQSVHS 115 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~---~rl~~i~~~~~~~~~~~~l~~i~~~~~~~ 115 (302)
.++.++||+|+||||.+-.+|..... .+. +|.+|+++ +++. +.|+..++.+ ++-+.....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~---~~~---~v~lis~D-~~R~ga~eQL~~~a~~l----------~vp~~~~~~ 64 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL---KGK---KVALISAD-TYRIGAVEQLKTYAEIL----------GVPFYVART 64 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH---TT-----EEEEEES-TSSTHHHHHHHHHHHHH----------TEEEEESST
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh---ccc---cceeecCC-CCCccHHHHHHHHHHHh----------ccccchhhc
Confidence 47899999999999999999998863 343 78888876 4444 5555555443 344444332
Q ss_pred HHHHHHHHH-HHHHHHHhccCCCCCeeEEEEechhhh
Q 022155 116 VDQLLDIMP-KIESFIKNSSNSRLPIRLIVIDSIAAL 151 (302)
Q Consensus 116 ~~~l~~~l~-~l~~~l~~~~~~~~~~~lvVIDsi~~~ 151 (302)
..+-.+++. .++..-. .+.++|+||.....
T Consensus 65 ~~~~~~~~~~~l~~~~~------~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 65 ESDPAEIAREALEKFRK------KGYDLVLIDTAGRS 95 (196)
T ss_dssp TSCHHHHHHHHHHHHHH------TTSSEEEEEE-SSS
T ss_pred chhhHHHHHHHHHHHhh------cCCCEEEEecCCcc
Confidence 221222222 2222222 35699999997653
No 224
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.28 E-value=1e-06 Score=75.14 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.+ +++.|.||+|+|||||+..++...
T Consensus 20 ~i~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 20 DLNE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred EEcc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 5789 999999999999999998887754
No 225
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.28 E-value=6.8e-07 Score=81.52 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 56 ~l~~i-s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 56 VVNGL-SFTVASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45554 3468999999999999999999999888754
No 226
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=2.9e-07 Score=85.05 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 34 ~l~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 34 AVDDV-SLTIYKGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45543 4468899999999999999999998888764
No 227
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.28 E-value=2e-06 Score=72.24 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=27.8
Q ss_pred hCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 31 LGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 31 L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++--+++|+++.|.|++|+|||||+..++...
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 35568899999999999999999998887753
No 228
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.27 E-value=2.4e-07 Score=84.93 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..|+...
T Consensus 19 ~l~~v-s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 19 ALKDI-SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred EEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34544 4468899999999999999999999988864
No 229
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=5.3e-07 Score=80.53 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=30.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|||||||+..++...
T Consensus 26 il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 26 ALNNT-SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45554 4578999999999999999999999888764
No 230
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=98.27 E-value=4.5e-06 Score=73.06 Aligned_cols=129 Identities=15% Similarity=0.225 Sum_probs=78.1
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
+.+++++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+++...+.. ..+ ..|+|.-.... .
T Consensus 40 ~p~~~~R~~i~e~L~TGI~~ID~l~--pigrGQr~~Ifg~~g~GKt~L~l~~i~~~~---~~~---v~~V~~~iGer--~ 109 (274)
T cd01132 40 APGIIPRKSVNEPLQTGIKAIDAMI--PIGRGQRELIIGDRQTGKTAIAIDTIINQK---GKK---VYCIYVAIGQK--A 109 (274)
T ss_pred CCChhhcCCcccccccCCEEeeccC--CcccCCEEEeeCCCCCCccHHHHHHHHHhc---CCC---eEEEEEecccc--h
Confidence 3457788888999999999999886 578999999999999999999766544432 222 25678765433 2
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEE-EeCCCHHHHHHH-----HHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFV-QSVHSVDQLLDI-----MPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~~~l~~~-----l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
+...++.+.+.. ...+++..+ ....+..-.... -..+.+++.. ...--||++|+++.+.
T Consensus 110 ~ev~e~~~~~~~---~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~----~G~~Vlvl~DslTr~A 174 (274)
T cd01132 110 STVAQVVKTLEE---HGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMD----NGKHALIIYDDLSKQA 174 (274)
T ss_pred HHHHHHHHHHHh---cCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHH----CCCCEEEEEcChHHHH
Confidence 333333333221 134455333 332221111111 1233344443 2344899999999974
No 231
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.27 E-value=1.2e-05 Score=67.80 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=24.8
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+..|+++.|.||+|+|||||+.+++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4557999999999999999999998765
No 232
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.27 E-value=1.3e-05 Score=62.88 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=32.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~ 83 (302)
.+..+.|.||+|+|||+++..++.... ..+. .++|++....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~---~v~~~~~~~~ 58 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF---RPGA---PFLYLNASDL 58 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh---cCCC---CeEEEehhhh
Confidence 577899999999999999999988763 2233 7888886643
No 233
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.6e-06 Score=70.97 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=35.4
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+--+.+|++..|.||+|||||||++.++.+-......| -+.++.++
T Consensus 24 nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G-----~I~~~Ged 69 (251)
T COG0396 24 NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG-----EILFDGED 69 (251)
T ss_pred ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecc-----eEEECCcc
Confidence 34688999999999999999999999988743322333 46777775
No 234
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.26 E-value=1.2e-06 Score=78.75 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=30.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 19 ~l~~v-sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 19 VVNDL-SFTIARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEcce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4578999999999999999999998887754
No 235
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.26 E-value=4.1e-06 Score=82.92 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=85.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHHHH-HhCCC--C
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQLSH-TFRPS--N 100 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i~~-~~~~~--~ 100 (302)
.|+++ +--|++|+.+.|+|++|||||||+.-++.... | ..| -+++|.-+ .++...+++-.. ..+.. .
T Consensus 488 vL~~i-sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~-p-~~G-----~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf 559 (709)
T COG2274 488 VLEDL-SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK-P-QQG-----RILLDGVDLNDIDLASLRRQVGYVLQDPFLF 559 (709)
T ss_pred hhhce-eEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC-C-CCc-----eEEECCEeHHhcCHHHHHhheeEEcccchhh
Confidence 45554 45799999999999999999999988877652 2 333 57887553 344444433221 11111 1
Q ss_pred CCCCCCcEEEEeCCC-HHHHHHHHH--HHHHHHHhc--------------------------cCCCCCeeEEEEechhhh
Q 022155 101 DHNPCDYIFVQSVHS-VDQLLDIMP--KIESFIKNS--------------------------SNSRLPIRLIVIDSIAAL 151 (302)
Q Consensus 101 ~~~~l~~i~~~~~~~-~~~l~~~l~--~l~~~l~~~--------------------------~~~~~~~~lvVIDsi~~~ 151 (302)
.....+|+....+.. .+++.+... .+.+.+.+. ..--.+++++++|+.++.
T Consensus 560 ~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSa 639 (709)
T COG2274 560 SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSA 639 (709)
T ss_pred cCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 123446666655433 345443332 112222110 001234599999998886
Q ss_pred hhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccC
Q 022155 152 FRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198 (302)
Q Consensus 152 ~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~ 198 (302)
...+ .+ ..+...|.++. .++|+|++.|=...+
T Consensus 640 LD~~--------sE-----~~I~~~L~~~~--~~~T~I~IaHRl~ti 671 (709)
T COG2274 640 LDPE--------TE-----AIILQNLLQIL--QGRTVIIIAHRLSTI 671 (709)
T ss_pred cCHh--------HH-----HHHHHHHHHHh--cCCeEEEEEccchHh
Confidence 5221 22 25566677665 468999998854443
No 236
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=3.3e-06 Score=73.31 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=29.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 18 ~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 18 ILKDI-SVKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred eeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34443 4468899999999999999999999888754
No 237
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.26 E-value=4.8e-06 Score=82.15 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=40.3
Q ss_pred CccccccCCCCCCcccc---CChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 6 TPQNLLDNPLTTEKCTV---GCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 6 ~~~~l~~~~~~~~~i~t---G~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+..++++.+.....+.. +.+.|+.+ +--+.+|+++.|+|++|||||||+..++...
T Consensus 8 ~~~~~l~v~~l~~~y~~~~~~~~~l~~i-s~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 8 DARDVLAVENLNIAFMQEQQKIAAVRNL-SFSLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred CCCceEEEeceEEEecCCCCceeEEEee-EEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33445555555544432 23466665 5578999999999999999999999998764
No 238
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.26 E-value=3.3e-06 Score=84.42 Aligned_cols=48 Identities=23% Similarity=0.233 Sum_probs=35.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+++ +--+++|+.+.|+|++|||||||+..++..+. +..| .+++|..
T Consensus 480 vL~~i-~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G-----~I~idg~ 527 (694)
T TIGR03375 480 ALDNV-SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEG-----SVLLDGV 527 (694)
T ss_pred ceeee-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCc-----eEEECCE
Confidence 34443 44689999999999999999999988887653 2333 4777754
No 239
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.25 E-value=1.1e-05 Score=75.01 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 18 vL~~v-s~~i~~Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 18 VLDGV-DLSVREGSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred EEEee-EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45554 4578999999999999999999999888754
No 240
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=1.2e-06 Score=79.20 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=31.3
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--|++|+++.|+|++|||||||+..++...
T Consensus 40 ~~L~~v-sl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 40 VALNNI-SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred cceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456665 5578999999999999999999999888754
No 241
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=2.3e-06 Score=75.86 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--|.+|+++.|.|++|+|||||+..++...
T Consensus 17 ~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 17 ALENI-NLVIKKGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred eeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45554 4568999999999999999999999888753
No 242
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=98.24 E-value=6.9e-06 Score=72.02 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=81.3
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+..++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+.+++.+... .... .|+|.-.... .
T Consensus 40 ~p~~~~R~~~~e~L~TGIr~ID~l~--pig~GQr~~If~~~G~GKTtLa~~i~~~i~~--~~~~---~~V~~~iGer--~ 110 (274)
T cd01133 40 APEFVEQSTKTEILETGIKVIDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNIAK--AHGG---YSVFAGVGER--T 110 (274)
T ss_pred CCCchhhcCcCcccccCceeeeccC--CcccCCEEEEecCCCCChhHHHHHHHHHHHh--cCCC---EEEEEEeccC--c
Confidence 3457788888899999999999887 5789999999999999999999999988742 1122 5677654322 2
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEE-EeCCCH---HHHHH--HHHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFV-QSVHSV---DQLLD--IMPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~---~~l~~--~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
+...++...+.. ...+++..+ ....+. ..... .-..+.+++.+ ....--|+++||++.+..
T Consensus 111 ~Ev~e~~~~~~~---~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~---~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 111 REGNDLYHEMKE---SGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRD---EEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHh---cCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH---hcCCeEEEEEeChhHHHH
Confidence 233333333211 134555433 332221 11111 11233444543 113447899999998753
No 243
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.24 E-value=1.5e-05 Score=68.44 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=25.4
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.+|+++.|.|++|||||||+..++...
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999998888764
No 244
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.24 E-value=4.4e-06 Score=82.04 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=36.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+++ +--+++|+.+.|+|++|||||||+..++.... +..| .+++|..
T Consensus 356 il~~i-~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G----~I~idg~ 403 (592)
T PRK10790 356 VLQNI-NLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEG----EIRLDGR 403 (592)
T ss_pred eeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCc----eEEECCE
Confidence 45544 45789999999999999999999998887652 2232 4677754
No 245
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.24 E-value=1.8e-06 Score=74.93 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|+|||||+..++...
T Consensus 16 il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 16 VLHNI-DLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred Eeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568899999999999999999999888764
No 246
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=1.1e-06 Score=78.06 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=30.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--|++|+++.|.||+|||||||+..++...
T Consensus 22 ~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 22 ALFDV-NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred eeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45654 5578999999999999999999998887754
No 247
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.24 E-value=6e-06 Score=72.86 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=31.0
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--+++|+++.|+||+|+|||||+..++...
T Consensus 27 ~~l~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 27 EAVKPL-SFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred ceeeee-eEEecCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 356655 5578999999999999999999998887764
No 248
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.24 E-value=3.9e-06 Score=74.00 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 22 ~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 22 VAENL-TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred Eeeec-ceEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45554 4578899999999999999999999887764
No 249
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.23 E-value=2.8e-06 Score=83.27 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=30.1
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+.+ .|-..+|+++.|.||+|||||||+..+|...
T Consensus 46 L~~v-sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~ 80 (613)
T KOG0061|consen 46 LKGV-SGTAKPGELLAIMGPSGSGKTTLLNALAGRL 80 (613)
T ss_pred eeCc-EEEEecCeEEEEECCCCCCHHHHHHHHhccc
Confidence 4444 4678999999999999999999999988875
No 250
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.23 E-value=2.6e-06 Score=74.68 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=29.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|+|||||+..++...
T Consensus 16 il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 16 IVDGV-DVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred EEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34444 4568899999999999999999999887753
No 251
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.23 E-value=1.6e-05 Score=68.06 Aligned_cols=36 Identities=25% Similarity=0.156 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.|++|+|||||+..++...
T Consensus 20 il~~v-s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 20 VLFDI-NLEINPGEIVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35544 4468899999999999999999999888653
No 252
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.22 E-value=1.9e-06 Score=79.19 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=26.7
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
--+.+|+++.|.||+|||||||+..++...
T Consensus 18 l~i~~Gei~~l~G~nGsGKSTLl~~iaGl~ 47 (354)
T TIGR02142 18 FTLPGQGVTAIFGRSGSGKTTLIRLIAGLT 47 (354)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999998888764
No 253
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.22 E-value=9.1e-06 Score=71.91 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--|.+|+++.|+||+|+|||||+..++...
T Consensus 16 il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 16 ILRDL-SLRIEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45544 4468899999999999999999999887764
No 254
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.22 E-value=4.9e-05 Score=71.33 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=75.3
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+........+.+.||+..+|.++ -+.+|+.+.|+|++|+|||+|+..++.... . .. .++.+..+..-..
T Consensus 129 ~p~p~~R~~i~~~l~tg~~vid~l~--~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~-~~---gvI~~~Gerg~ev 199 (438)
T PRK07721 129 PPNPLKRPPIREPMEVGVRAIDSLL--TVGKGQRVGIFAGSGVGKSTLMGMIARNTS---A-DL---NVIALIGERGREV 199 (438)
T ss_pred CCChhhccCcccccccchhhhheee--eecCCcEEEEECCCCCCHHHHHHHHhcccC---C-Ce---EEEEEEecCCccH
Confidence 3445666666778999999999985 689999999999999999999977776542 1 11 4566665544322
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEEEeCCCHH---HHHH--HHHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFVQSVHSVD---QLLD--IMPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~---~l~~--~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
.. +.... .........+.+....+.. .+.. ....+.+++.+ .+.--|+++||++.+..
T Consensus 200 ~e---~~~~~--l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~----~g~~Vll~~Dsltr~A~ 262 (438)
T PRK07721 200 RE---FIERD--LGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRD----QGLNVMLMMDSVTRVAM 262 (438)
T ss_pred HH---HHHhh--cChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----CCCcEEEEEeChHHHHH
Confidence 22 11110 0011112234444322211 1111 11233444543 24448899999998754
No 255
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.22 E-value=5e-06 Score=83.37 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=36.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+++ +--+++|+.+.|+|++|||||||+.-++.... +..| .+++|..
T Consensus 494 vL~~i-sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G-----~I~idg~ 541 (710)
T TIGR03796 494 LIENF-SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSG-----EILFDGI 541 (710)
T ss_pred cccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCc-----EEEECCE
Confidence 45554 45789999999999999999999988888753 2333 5777754
No 256
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.22 E-value=9.3e-07 Score=75.61 Aligned_cols=36 Identities=25% Similarity=0.208 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 17 il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 17 AVDDL-SLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred eecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568999999999999999999998888754
No 257
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.21 E-value=1.3e-05 Score=70.37 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|||||||+..++...
T Consensus 21 il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 21 GCRDV-SFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eeeee-eEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44443 4468899999999999999999999888764
No 258
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=2.2e-05 Score=71.64 Aligned_cols=93 Identities=15% Similarity=0.230 Sum_probs=61.4
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH---HHHHHHHHHhCCCCCCCCCCcEEEE
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM---RRLHQLSHTFRPSNDHNPCDYIFVQ 111 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~---~rl~~i~~~~~~~~~~~~l~~i~~~ 111 (302)
+.++.++.|+||+|+||||++..+|..+. ..|. +|.+|+++ ++.. +++...+.. .++.+.
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~---~~g~---~V~lItaD-tyR~gAveQLk~yae~----------lgvpv~ 265 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLL---KQNR---TVGFITTD-TFRSGAVEQFQGYADK----------LDVELI 265 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC---eEEEEeCC-ccCccHHHHHHHHhhc----------CCCCEE
Confidence 56799999999999999999999998763 3444 78999987 3432 444444432 122333
Q ss_pred eCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 112 SVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 112 ~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
...+..++.+.+..+.. ....++|+||......
T Consensus 266 ~~~dp~dL~~al~~l~~--------~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 266 VATSPAELEEAVQYMTY--------VNCVDHILIDTVGRNY 298 (407)
T ss_pred ecCCHHHHHHHHHHHHh--------cCCCCEEEEECCCCCc
Confidence 34566666555543321 1246999999987643
No 259
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=4.2e-06 Score=72.47 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ .--+.+|+++.|+||+|+|||||+..++...
T Consensus 20 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 20 ALHEV-SLHINQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred eeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 45554 4578999999999999999999998887653
No 260
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.21 E-value=4.6e-06 Score=83.62 Aligned_cols=48 Identities=31% Similarity=0.295 Sum_probs=36.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+.+.|+|++|||||||+..++..+. | ..| .+++|..
T Consensus 489 iL~~i-sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~-p-~~G-----~I~idg~ 536 (708)
T TIGR01193 489 ILSDI-SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ-A-RSG-----EILLNGF 536 (708)
T ss_pred ceece-eEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CCc-----EEEECCE
Confidence 45544 45689999999999999999999988887653 2 333 4777754
No 261
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.21 E-value=4.1e-07 Score=83.56 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 20 ~l~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 20 VLDDL-SLEIEAGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred EEeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45544 4468899999999999999999999888754
No 262
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.21 E-value=2.4e-05 Score=68.52 Aligned_cols=36 Identities=19% Similarity=0.062 Sum_probs=30.4
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ . -+.+|+++.|.||+|+|||||+..++...
T Consensus 15 ~~l~~i-~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 15 FKLHRL-P-VPREGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred hhhhcC-C-CCCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467776 3 37899999999999999999998887764
No 263
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.21 E-value=1.4e-05 Score=76.72 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=30.6
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 17 ~il~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 17 KTLQLP-SLTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred eecccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356655 4568999999999999999999998888753
No 264
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.20 E-value=1.4e-05 Score=69.96 Aligned_cols=36 Identities=22% Similarity=0.117 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.|++|||||||+..++...
T Consensus 18 ~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 18 GCRDV-SFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred Eeecc-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444 4568999999999999999999998887764
No 265
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.20 E-value=1.6e-06 Score=77.47 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=36.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--|++|+++.|.|++|+|||||+..++... ++..| .++++..
T Consensus 21 ~l~~v-sl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~--~p~~G-----~i~~~g~ 68 (288)
T PRK13643 21 ALFDI-DLEVKKGSYTALIGHTGSGKSTLLQHLNGLL--QPTEG-----KVTVGDI 68 (288)
T ss_pred ceeee-EEEEcCCCEEEEECCCCChHHHHHHHHhcCC--CCCCc-----EEEECCE
Confidence 56654 5678999999999999999999999888764 32333 4566654
No 266
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.20 E-value=1.5e-05 Score=73.44 Aligned_cols=140 Identities=18% Similarity=0.268 Sum_probs=78.7
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCC-CCCeE----EEEeCCCCCCHHHH-HHHHHH-hCCC-CCCC
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGG-LSASS----LYLHTEFPFPMRRL-HQLSHT-FRPS-NDHN 103 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg-~~~~v----lyid~e~~~~~~rl-~~i~~~-~~~~-~~~~ 103 (302)
.|.|..|+++.+.||+|.|||||+..+|... -| ..|+ ...++ =||..+..-+.+.+ .....+ +... ...+
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~i-kP-deg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~e 438 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVI-KP-DEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTE 438 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhccc-cC-CCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHh
Confidence 3779999999999999999999999888764 33 3332 11122 35666544333332 222222 1100 0001
Q ss_pred CC-----CcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHH
Q 022155 104 PC-----DYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGM 176 (302)
Q Consensus 104 ~l-----~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~ 176 (302)
+. ++++-..+. +--++..+ .+...+. ...++-+||..++++ +..+|. .+.+.
T Consensus 439 i~~pl~l~~i~e~~v~~LSGGELQRv--aIaa~L~------reADlYllDEPSA~L---------DvEqR~----~vakv 497 (591)
T COG1245 439 IVKPLNLEDLLERPVDELSGGELQRV--AIAAALS------READLYLLDEPSAYL---------DVEQRI----IVAKV 497 (591)
T ss_pred hcCccchHHHHhcccccCCchhHHHH--HHHHHhc------cccCEEEecCchhhc---------cHHHHH----HHHHH
Confidence 11 111111111 11111111 1122232 356999999999976 334552 45678
Q ss_pred HHHHHHHcCcEEEEEecc
Q 022155 177 LKAMAVGFGLAVLVTNQV 194 (302)
Q Consensus 177 L~~la~~~~~~viv~n~~ 194 (302)
+++++...+.+.+++.|.
T Consensus 498 IRR~~e~~~kta~vVdHD 515 (591)
T COG1245 498 IRRFIENNEKTALVVDHD 515 (591)
T ss_pred HHHHHhhcCceEEEEecc
Confidence 889999999999999995
No 267
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=4.4e-06 Score=72.48 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+||+|+|||||+..++...
T Consensus 18 ~l~~~-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 18 VVEDV-SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44444 4568999999999999999999998888764
No 268
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.19 E-value=8e-06 Score=73.94 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=78.5
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHHHHHh-CCC-------CCC-
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQLSHTF-RPS-------NDH- 102 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i~~~~-~~~-------~~~- 102 (302)
-|.+|+++-|.|.+||||||||+-+....+ | ..| -+++|.+- ....++.+++..+. ... .++
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~-P-qsG-----~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~ 417 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-P-QSG-----EILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG 417 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHhcccC-C-CCC-----ceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc
Confidence 578999999999999999999998888764 3 334 37777662 22334544444331 110 000
Q ss_pred --------------------CCCCcEEE-EeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChh
Q 022155 103 --------------------NPCDYIFV-QSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMD 161 (302)
Q Consensus 103 --------------------~~l~~i~~-~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~ 161 (302)
.+.++-+. ....+ ....-+..+-+++++ . +++|+|+-++= .
T Consensus 418 ~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLSt--GQkKRlAll~AllEe------R-~Ilv~DEWAAD---------Q 479 (546)
T COG4615 418 KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLST--GQKKRLALLLALLEE------R-DILVLDEWAAD---------Q 479 (546)
T ss_pred CCChHHHHHHHHHHHHhhhhcccCCccccccccc--chHHHHHHHHHHHhh------C-CeEEeehhhcc---------C
Confidence 00111111 11111 112223334455654 2 78999998871 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCC
Q 022155 162 DLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLME 199 (302)
Q Consensus 162 ~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~ 199 (302)
|..-|. .+...+-.+.++.|.||++++|....+.
T Consensus 480 DPaFRR----~FY~~lLp~LK~qGKTI~aIsHDd~YF~ 513 (546)
T COG4615 480 DPAFRR----EFYQVLLPLLKEQGKTIFAISHDDHYFI 513 (546)
T ss_pred ChHHHH----HHHHHHhHHHHHhCCeEEEEecCchhhh
Confidence 334453 3345555556688999999999765544
No 269
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.19 E-value=1.4e-05 Score=74.71 Aligned_cols=128 Identities=15% Similarity=0.186 Sum_probs=77.4
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+.+.+....+.+.||+..+|.++ -+.+|+.+.|.|++|+|||+|+.+++.... . .. .++.+..|.....
T Consensus 134 ~p~p~~R~~i~e~l~TGi~~ID~l~--~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~-d~---~vi~~iGer~~ev 204 (441)
T PRK09099 134 PPDPMSRRMVEAPLPTGVRIVDGLM--TLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---C-DV---NVIALIGERGREV 204 (441)
T ss_pred CCChhhcCCcccccCCCceecccee--eecCCCEEEEECCCCCCHHHHHHHHhCCCC---C-Ce---EEEEEEccChHHH
Confidence 3346666677889999999999996 578999999999999999999998887652 1 11 3444455544333
Q ss_pred HHHHHHHHHhCCCCCCCCCCcE-EEEeCCCH---HHHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYI-FVQSVHSV---DQLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i-~~~~~~~~---~~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
.++ ...+.. ...+++. .+....+. ...... -..+.+++.+ .+.--|+++||++.+..
T Consensus 205 ~ef---~~~~~~---~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd----~G~~VLl~~DslTr~A~ 267 (441)
T PRK09099 205 REF---IELILG---EDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRD----RGLRVLLMMDSLTRFAR 267 (441)
T ss_pred HHH---HHHHhh---cCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCCCEEEeccchhHHHH
Confidence 333 222111 1233443 33333321 111111 1123344443 34458999999999764
No 270
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.19 E-value=8.7e-06 Score=79.56 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=35.3
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
|+.+ +--+++|+.+.|+|++|+|||||+..++.... +.. +.++++..
T Consensus 348 l~~i-nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~----G~I~i~g~ 394 (571)
T TIGR02203 348 LDSI-SLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDS----GQILLDGH 394 (571)
T ss_pred ccCe-eEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCC----CeEEECCE
Confidence 4443 44688999999999999999999999988753 222 25777754
No 271
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=1.4e-05 Score=77.37 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=42.0
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHH
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLH 90 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~ 90 (302)
.+.|+++ .--|++|+++.|+||+|+||||++.-+...+. +.+| .+.+|... .++...++
T Consensus 481 ~~Vlk~l-sfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG----~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 481 VPVLKNL-SFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSG----RILLDGVPISDINHKYLR 541 (716)
T ss_pred chhhcCc-eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCC----eEEECCeehhhcCHHHHH
Confidence 3355554 45899999999999999999999977766653 3343 57788663 34455554
No 272
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=2.4e-06 Score=75.59 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 16 il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 16 VLKGL-NLDFSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred cccce-EEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45554 4578999999999999999999998887653
No 273
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=1.4e-06 Score=77.65 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=35.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+.+|+++.|.||+|+|||||+..++... ++..| .++++.+
T Consensus 22 ~l~~v-sl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~--~p~~G-----~i~~~g~ 69 (287)
T PRK13641 22 GLDNI-SFELEEGSFVALVGHTGSGKSTLMQHFNALL--KPSSG-----TITIAGY 69 (287)
T ss_pred ceeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCc-----EEEECCE
Confidence 46655 4578999999999999999999999887753 33333 3566654
No 274
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=98.17 E-value=1.6e-05 Score=69.65 Aligned_cols=134 Identities=10% Similarity=0.138 Sum_probs=82.4
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+.+++....+.+.||+..+|-++ -+-+|+-+.|+|.+|+|||+|+.+++.+..+. +.+....|+|.-.-+.-
T Consensus 40 ap~~~~R~~i~e~l~TGIkaID~l~--pig~GQR~gIfgg~GvGKt~L~~~i~~~~~~~--~~~~~~v~V~~~IGeR~-- 113 (276)
T cd01135 40 PINPVARIYPEEMIQTGISAIDGMN--TLVRGQKIPIFSGSGLPHNELAAQIARQAGVV--GEEENFAVVFAAMGITM-- 113 (276)
T ss_pred CcCchhcCCcccccccCcEeeeccc--ccccCCEEEeecCCCCChhHHHHHHHHhhhcc--ccCCCCEEEEEEecccc--
Confidence 4457788888999999999999987 57799999999999999999999988775311 11112268887754322
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEEE-eCCCHHHHHHHH-----HHHHHHHHhccCCC-CCeeEEEEechhhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFVQ-SVHSVDQLLDIM-----PKIESFIKNSSNSR-LPIRLIVIDSIAALFR 153 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~~-~~~~~~~l~~~l-----~~l~~~l~~~~~~~-~~~~lvVIDsi~~~~~ 153 (302)
....++.+.+. ....+++..+. ...+..-....+ ..+.+++.+ + +.--|+++|+++.+..
T Consensus 114 rev~e~~~~~~---~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAEyfrd----~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 114 EDARFFKDDFE---ETGALERVVLFLNLANDPTIERIITPRMALTTAEYLAY----EKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHhh---hcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh----ccCCeEEEEEcChhHHHH
Confidence 22223333221 12345554433 322211111111 123445543 2 3448899999998653
No 275
>PRK13409 putative ATPase RIL; Provisional
Probab=98.16 E-value=3.3e-06 Score=82.52 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=27.7
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++-+.+|+++.|.||+|+|||||+..++...
T Consensus 359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~ 389 (590)
T PRK13409 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL 389 (590)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5568999999999999999999999888764
No 276
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.16 E-value=1.3e-05 Score=74.92 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=47.2
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.+++++....+.+.||+..+|.++ .+..|+.+.|.|++|+|||+|+..++...
T Consensus 116 ~~~~~~R~~i~~~l~tG~~~id~l~--~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 116 PPPPMSRQPIDQPLPTGVRAIDGLL--TCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred CcCHHHccCcccccCCCceeehhhc--cccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 4567788888889999999999996 68899999999999999999988787654
No 277
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.16 E-value=2.7e-06 Score=72.89 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=27.0
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+--+.+|+++.|.|++|+|||||+..++...
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 20 SLTVPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999998887753
No 278
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.16 E-value=1.3e-05 Score=67.79 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=30.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.|++|+|||||+..++...
T Consensus 23 ~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 23 VLKNV-SFKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred cccCc-eEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45554 4468999999999999999999999888764
No 279
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.16 E-value=1.2e-05 Score=77.88 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=36.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+.+.|+||+|||||||+..++... ++..| -++++..
T Consensus 337 il~~i-~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G-----~I~~~g~ 384 (529)
T TIGR02857 337 ALRPV-SFTVPPGERVALVGPSGAGKSTLLNLLLGFV--DPTEG-----SIAVNGV 384 (529)
T ss_pred cccce-eEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCc-----EEEECCE
Confidence 45554 4578999999999999999999998888765 22333 4677765
No 280
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.16 E-value=3.9e-05 Score=62.61 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=26.7
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-.+..|+.+.|.|.+|||||||+..++.-.
T Consensus 34 FtL~~~QTlaiIG~NGSGKSTLakMlaGmi 63 (267)
T COG4167 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EEecCCcEEEEEccCCCcHhHHHHHHhccc
Confidence 367899999999999999999999888764
No 281
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.15 E-value=1.2e-05 Score=68.53 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +-.+.+|+++.|.|++|+|||||+..++...
T Consensus 26 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 26 VFGPL-DFHVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred eeecc-eEEECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45544 4578999999999999999999999888764
No 282
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=98.15 E-value=2.9e-05 Score=62.16 Aligned_cols=132 Identities=19% Similarity=0.217 Sum_probs=76.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQL 119 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l 119 (302)
++.|.|++-||||.+|-.++... ++ .++||-|...|+.+.-..|..... ..+.. + ..+..+.+...
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~~------~~---~v~YvAT~~a~D~Em~~RI~~Hr~-rRp~~-W--~tvE~~~~l~~- 67 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGES------GG---QVLYVATGRAFDDEMQERIAHHRA-RRPEH-W--RTVEAPLDLAT- 67 (175)
T ss_pred eEEEecCccCCchHHHHHHHHhh------CC---ceEEEEecCCCCHHHHHHHHHHHh-cCCCc-c--eEEeccccHHH-
Confidence 68899999999999999998763 33 799999999998766666665532 22211 1 11122233222
Q ss_pred HHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHH-HHHHHHHcCcEEEEEecccccC
Q 022155 120 LDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGM-LKAMAVGFGLAVLVTNQVVDLM 198 (302)
Q Consensus 120 ~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~-L~~la~~~~~~viv~n~~~~~~ 198 (302)
++. ... .+-++|.+|+++..+...+..+..+... .+.+...+.. +..+....+-.|+++|++-..+
T Consensus 68 --~L~---~~~-------~~~~~VLvDcLt~wvtNll~~~e~~~~~-~~~~~~~~~~L~~al~~~~~~~ilVsNEvG~Gi 134 (175)
T COG2087 68 --LLE---ALI-------EPGDVVLVDCLTLWVTNLLFAGEKDWSA-EAAIEAEIEALLAALSRAPGTVVLVSNEVGLGI 134 (175)
T ss_pred --HHH---hcc-------cCCCEEEEEcHHHHHHHHHhccccccch-hhhHHHHHHHHHHHHhcCCccEEEEecCccCCc
Confidence 222 222 1338999999999876554432111111 1112222233 3333333346888999986543
No 283
>PF13173 AAA_14: AAA domain
Probab=98.15 E-value=1.3e-05 Score=62.48 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=31.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+.++.|.||.|+||||++.+++.... + . ..++|++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~---~---~~~~yi~~~~ 39 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-P---P---ENILYINFDD 39 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-c---c---ccceeeccCC
Confidence 57899999999999999999998762 1 1 2789999875
No 284
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.15 E-value=5.3e-06 Score=72.39 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+|++|||||||+..++...
T Consensus 18 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 18 VLHGI-DLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred eeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45554 4578999999999999999999999887753
No 285
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=3e-05 Score=65.49 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+|++|+|||||+..++...
T Consensus 22 il~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 22 ILKDF-SGVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred eeeeE-EEEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 34443 4468999999999999999999998887764
No 286
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.15 E-value=1.1e-05 Score=69.83 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.|++|+|||||+..++...
T Consensus 17 ~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 17 ILDNI-SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred ceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 44443 4468899999999999999999999888764
No 287
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=4.3e-05 Score=70.09 Aligned_cols=93 Identities=14% Similarity=0.191 Sum_probs=58.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHH
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVD 117 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~ 117 (302)
..++.|+||+|+||||++..+|..+. ..|. +|.+++++ ++....+.++..... ..++.+....+..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~---~~Gk---kVglI~aD-t~RiaAvEQLk~yae-------~lgipv~v~~d~~ 306 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH---GKKK---TVGFITTD-HSRIGTVQQLQDYVK-------TIGFEVIAVRDEA 306 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH---HcCC---cEEEEecC-CcchHHHHHHHHHhh-------hcCCcEEecCCHH
Confidence 46899999999999999999998764 3444 78888877 444333333332111 1233444445666
Q ss_pred HHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 118 QLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 118 ~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
++.+.+..+.. ..+.++|+||......
T Consensus 307 ~L~~aL~~lk~--------~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 307 AMTRALTYFKE--------EARVDYILIDTAGKNY 333 (436)
T ss_pred HHHHHHHHHHh--------ccCCCEEEEeCccccC
Confidence 66554443321 1246999999877643
No 288
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.14 E-value=7.7e-06 Score=76.04 Aligned_cols=30 Identities=23% Similarity=0.198 Sum_probs=26.7
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-|++++.-+.|+||||+|||+++..+|...
T Consensus 174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 378888889999999999999999988764
No 289
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.14 E-value=3.5e-05 Score=66.14 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=29.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|||||||+..++...
T Consensus 37 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 37 ALKDV-SFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34443 3468999999999999999999998888754
No 290
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.14 E-value=4.1e-05 Score=63.94 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=35.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
-||.+ .--+++|++..|.||+|+|||||+..++.... ..+| +|.|..
T Consensus 16 ll~~v-sl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G---~v~~~g 62 (259)
T COG4559 16 LLDGV-SLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSG---EVTLNG 62 (259)
T ss_pred eccCc-ceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCC---eEeeCC
Confidence 34444 44689999999999999999999999998863 2343 666654
No 291
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.13 E-value=1.1e-05 Score=79.14 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=35.2
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
|+.+ +--+++|+.+.|+|++|||||||+..++.... +..| .++++..
T Consensus 351 L~~i-nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--p~~G-----~I~i~g~ 397 (588)
T PRK13657 351 VEDV-SFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD--PQSG-----RILIDGT 397 (588)
T ss_pred ecce-eEEECCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCC-----EEEECCE
Confidence 4443 44688999999999999999999988877653 2333 5777754
No 292
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.13 E-value=3e-05 Score=68.61 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+||+|+|||||+..++...
T Consensus 22 il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 22 ALRDA-SFTVPGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568899999999999999999999887753
No 293
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.13 E-value=1.2e-05 Score=68.74 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=30.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+||+|+|||||+..++...
T Consensus 19 ~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 19 VLKNI-SFSIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred cccce-EEEECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 55554 4578999999999999999999999888764
No 294
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.12 E-value=8.4e-06 Score=70.45 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 16 ~l~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 16 VLKDV-SFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34443 4468899999999999999999999888764
No 295
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.12 E-value=9.1e-06 Score=70.35 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.|++|+|||||+..++...
T Consensus 36 il~~v-s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 36 ALKGI-SFTIEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred eeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34444 4568899999999999999999999888754
No 296
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.12 E-value=1.1e-05 Score=75.21 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=76.5
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+.+......+.+.||+..+|.++ -+.+|+.+.|.|++|+|||+|+.+++... ..+. .++.+..+.....
T Consensus 126 ~p~~~~r~~v~~~l~tGi~aID~ll--~i~~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~---~vi~~iGeRgrEv 196 (433)
T PRK07594 126 PPPAMVRQPITQPLMTGIRAIDSVA--TCGEGQRVGIFSAPGVGKSTLLAMLCNAP----DADS---NVLVLIGERGREV 196 (433)
T ss_pred CCCceeccCHhheeCCCceeeeeee--ecCCCCEEEEECCCCCCccHHHHHhcCCC----CCCE---EEEEEECCCchHH
Confidence 3346677777888999999999985 68999999999999999999997776543 1221 3444555644332
Q ss_pred -HHHHHHHHHhCCCCCCCCCCcEEE-EeCCCHH---HHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 87 -RRLHQLSHTFRPSNDHNPCDYIFV-QSVHSVD---QLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 87 -~rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~~---~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
+.+.+... ...+++..+ ....+.. .+... -..+.+++.+ .+.--|+++||++.+..
T Consensus 197 ~efl~~~~~-------~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd----~G~~VLl~~Dsltr~A~ 259 (433)
T PRK07594 197 REFIDFTLS-------EETRKRCVIVVATSDRPALERVRALFVATTIAEFFRD----NGKRVVLLADSLTRYAR 259 (433)
T ss_pred HHHHHHhhc-------cCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----CCCcEEEEEeCHHHHHH
Confidence 22222211 123445433 2222211 11111 1123444544 34448999999998653
No 297
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.12 E-value=3.8e-05 Score=66.25 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=27.4
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+--+.+|+++.|+|++|+|||||+..++...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 20 SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999999999888764
No 298
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.12 E-value=2e-05 Score=66.29 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=29.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|+|||||+..++...
T Consensus 15 ~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 15 LFEGL-SFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444 4468899999999999999999999887754
No 299
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.12 E-value=7.7e-06 Score=69.63 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=31.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHG 69 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~g 69 (302)
.|+++ +--+..|+.+.|+|++|||||||+.-++... ++..|
T Consensus 42 aL~di-sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~--~Pt~G 82 (249)
T COG1134 42 ALKDI-SFEIYKGERVGIIGHNGAGKSTLLKLIAGIY--KPTSG 82 (249)
T ss_pred EecCc-eEEEeCCCEEEEECCCCCcHHHHHHHHhCcc--CCCCc
Confidence 45554 4568999999999999999999997776653 43444
No 300
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.11 E-value=3.9e-05 Score=69.28 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=35.1
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFP 85 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~ 85 (302)
..+.++.|+||+|+||||++..+|.... ..|+ +|+.++++ .+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~---~V~Li~~D-~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGK---KVLLAAGD-TFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCC---eEEEEecC-ccc
Confidence 3689999999999999999999998864 4455 78888865 444
No 301
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.11 E-value=3.1e-05 Score=68.27 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|||||||+..++...
T Consensus 26 il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 26 VLTNV-SLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred EeeCc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568999999999999999999998887754
No 302
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.11 E-value=2.6e-05 Score=68.40 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+|++|+|||||+..++...
T Consensus 20 ~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 20 VLKGV-SLQANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4578999999999999999999998888764
No 303
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.11 E-value=1.1e-05 Score=77.88 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 26 il~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 26 VLKGI-DFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4578999999999999999999998887653
No 304
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.11 E-value=1.2e-05 Score=78.75 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=36.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+.+.|+||+|||||||+..++.... +..| .++++..
T Consensus 355 il~~i-~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G-----~I~i~g~ 402 (574)
T PRK11160 355 VLKGL-SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQG-----EILLNGQ 402 (574)
T ss_pred ceecc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCc-----eEEECCE
Confidence 45554 45789999999999999999999988887752 2333 4777754
No 305
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.4e-05 Score=70.01 Aligned_cols=121 Identities=14% Similarity=0.181 Sum_probs=71.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
||.+-+=+.++||||+|||.||...|... .+-||-.-++ +-.++.. . .
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-----------~AtFIrvvgS---ElVqKYi----G-------------E- 228 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQT-----------DATFIRVVGS---ELVQKYI----G-------------E- 228 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhcc-----------CceEEEeccH---HHHHHHh----c-------------c-
Confidence 78777779999999999999998877654 3455553332 1111111 0 0
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEec
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQ 193 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~ 193 (302)
. ..++.++-.+-.+ +.+.+|+||.|.++-..-++.+.+.-.+-++.|.++++.|.-+-..-|+-||+-+.
T Consensus 229 -G----aRlVRelF~lAre-----kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 229 -G----ARLVRELFELARE-----KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred -c----hHHHHHHHHHHhh-----cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC
Confidence 1 1123333333333 45699999999998643333221111233445667777777776777888887655
Q ss_pred ccc
Q 022155 194 VVD 196 (302)
Q Consensus 194 ~~~ 196 (302)
=.+
T Consensus 299 R~D 301 (406)
T COG1222 299 RPD 301 (406)
T ss_pred Ccc
Confidence 433
No 306
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.10 E-value=2.2e-05 Score=76.91 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=35.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+.+.|+|++|||||||+..++.... +..| .++++..
T Consensus 355 iL~~i-nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G-----~I~i~g~ 402 (576)
T TIGR02204 355 ALDGL-NLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSG-----RILLDGV 402 (576)
T ss_pred cccce-eEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCC-----EEEECCE
Confidence 34443 44689999999999999999999999988753 2333 4666643
No 307
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.10 E-value=3.4e-05 Score=65.45 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=28.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+| ++.|.||+|||||||+..++...
T Consensus 15 ~l~~v-s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 15 ALDGV-SLTLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EEcce-eEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 45544 4467889 99999999999999998887753
No 308
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.10 E-value=2.2e-05 Score=77.54 Aligned_cols=36 Identities=25% Similarity=0.208 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+|++|||||||+..++...
T Consensus 339 ~l~~v-s~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~ 374 (623)
T PRK10261 339 AVEKV-SFDLWPGETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred EEeee-EeEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45554 4578899999999999999999998888653
No 309
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.10 E-value=8.4e-06 Score=78.62 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=30.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 20 il~~v-s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 20 ALKSV-NLTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred Eeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 45554 5578999999999999999999998887654
No 310
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.10 E-value=0.00011 Score=62.04 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=30.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 20 il~~~-s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 20 TLKDI-NLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred eeeee-eEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 45544 4568999999999999999999999888764
No 311
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.09 E-value=3.1e-05 Score=64.18 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=43.2
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+.++++-..+++++ .--...|+++.|.||+|+||||++..++... .| .. .+++||.-+
T Consensus 8 ~K~y~~~v~AvrdV-SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL-~P-~~-----G~v~idg~d 65 (245)
T COG4555 8 TKSYGSKVQAVRDV-SFEAEEGEITGLLGENGAGKTTLLRMIATLL-IP-DS-----GKVTIDGVD 65 (245)
T ss_pred hhhccCHHhhhhhe-eEEeccceEEEEEcCCCCCchhHHHHHHHhc-cC-CC-----ceEEEeecc
Confidence 44555545567776 4467899999999999999999998887765 44 33 368888654
No 312
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.09 E-value=1.4e-05 Score=80.02 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=36.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+.+.|+|++|||||||+..++.... | ..| .+++|..
T Consensus 472 il~~i-~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~-p-~~G-----~I~idg~ 519 (694)
T TIGR01846 472 VLSNL-NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT-P-QHG-----QVLVDGV 519 (694)
T ss_pred ccccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-C-CCc-----eEEECCE
Confidence 45554 45689999999999999999999988888752 2 333 4777765
No 313
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.09 E-value=1.8e-05 Score=77.30 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+.+.|+||+|||||||+..++...
T Consensus 330 ~l~~i-~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 330 ALENV-NFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred cccCe-eEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45444 4468999999999999999999998888765
No 314
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.09 E-value=3.5e-05 Score=67.92 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=29.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--|++|+++.|.||+|+|||||+..++...
T Consensus 39 il~~i-s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 39 ALDDI-SLKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44443 4468899999999999999999999888753
No 315
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.09 E-value=3.6e-06 Score=80.98 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=30.4
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 18 ~~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 18 KALSGA-ALNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred EEeeee-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 345554 4568899999999999999999998887764
No 316
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.09 E-value=4.3e-05 Score=67.48 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--|.+|+++.|+||+|+|||||+..++...
T Consensus 27 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 27 VLNNV-SLSLKSGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred eEece-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44444 4568999999999999999999999887653
No 317
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.09 E-value=1.7e-05 Score=74.30 Aligned_cols=52 Identities=25% Similarity=0.202 Sum_probs=45.0
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.+.+......+.+.||+..+|.++ -+.+|+.+.|+|++|+|||+|+.+++..
T Consensus 140 ~~p~~R~~i~~~l~TGi~aID~l~--~I~~GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 140 INPLNRHPISEPLDVGIRSINGLL--TVGRGQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred CCHHHcccccCCcccceeeecceE--EecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345666667889999999999996 6899999999999999999999877664
No 318
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.08 E-value=3e-06 Score=72.06 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=28.3
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
+|++ +--+++|++..+.|++|+||||....++..
T Consensus 18 v~~i-sf~v~~G~i~GllG~NGAGKTTtfRmILgl 51 (300)
T COG4152 18 VDNI-SFEVPPGEIFGLLGPNGAGKTTTFRMILGL 51 (300)
T ss_pred ecce-eeeecCCeEEEeecCCCCCccchHHHHhcc
Confidence 4444 446899999999999999999999877765
No 319
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.08 E-value=9.6e-06 Score=71.89 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--|.+|+++.|+|++|+|||||+..++...
T Consensus 17 ~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 17 ALKGI-NFKAEKGEMVALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4578999999999999999999999887653
No 320
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.08 E-value=7.5e-05 Score=66.00 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=34.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
+..++.++|++|+||||++..+|..+. ..|. +|..++++ .+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~---~V~li~~D-~~r~ 113 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---KQGK---SVLLAAGD-TFRA 113 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCC---EEEEEeCC-CCCH
Confidence 468999999999999999999998764 4454 89999977 3443
No 321
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.08 E-value=1.6e-05 Score=70.74 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=33.9
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+.+.++.|+||+|+||||++..++..+.. ..|+ .+|.+|+++.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~--~~g~--~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVL--EHGN--KKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH--HcCC--CeEEEEECCc
Confidence 46789999999999999999999988742 1131 2899999873
No 322
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.08 E-value=2.4e-05 Score=69.34 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=35.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--|.+|+++.|+|++|+|||||+..++... + ..| -++|+..
T Consensus 19 ~l~~i-sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~--~-~~G-----~I~i~g~ 65 (275)
T cd03289 19 VLENI-SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N-TEG-----DIQIDGV 65 (275)
T ss_pred ceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhhhc--C-CCc-----EEEECCE
Confidence 45544 4468999999999999999999999988775 2 222 4677765
No 323
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=98.08 E-value=2.4e-05 Score=73.83 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=79.6
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+++.+....+.+.||+..+|-++ -+-+|+=..|.|++|+|||++++....+.. ..+ ..|+|.-.-...
T Consensus 114 ap~~~~R~~v~epL~TGIkaID~l~--pigrGQR~~Ifg~~gtGKT~lal~~I~~q~---~~d---v~~V~~~IGer~-- 183 (507)
T PRK07165 114 AHGLMTVKTLNEQLYTGIIAIDLLI--PIGKGQRELIIGDRQTGKTHIALNTIINQK---NTN---VKCIYVAIGQKR-- 183 (507)
T ss_pred CCCchhhCCCCceeecCchhhhhcC--CcccCCEEEeecCCCCCccHHHHHHHHHhc---CCC---eEEEEEEccCCh--
Confidence 4457788888999999999999987 577999999999999999999765544432 222 267888754332
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHH-----HHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIM-----PKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l-----~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
+...++...+.. ...+++..+....+.......+ ..+.+++.. . .--|||+|+++.+.
T Consensus 184 ~ev~~~~~~l~~---~gal~~tvvV~atsd~~~~r~~ap~~a~tiAEyfrd----~-~dVLlv~DdLTr~A 246 (507)
T PRK07165 184 ENLSRIYETLKE---HDALKNTIIIDAPSTSPYEQYLAPYVAMAHAENISY----N-DDVLIVFDDLTKHA 246 (507)
T ss_pred HHHHHHHHHhhh---cCceeeeEEEEeCCCCHHHHHHHHHHHHHHHHHHHh----c-CceEEEEcChHHHH
Confidence 223333333221 2345554443322211111111 123344444 2 34899999999864
No 324
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.07 E-value=5.2e-05 Score=65.58 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.|++|||||||+..++...
T Consensus 18 ~l~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 18 ILKGL-SLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ceece-EEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 45554 4468899999999999999999999888764
No 325
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=5.8e-05 Score=71.76 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=56.1
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
-+..|+++.|+||+|+||||++..|+..+... ..+. +|.+++++. +......++... . .. -++.+...
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gk---kVaLIdtDt-yRigA~EQLk~y-a-----~i-Lgv~v~~a 413 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPR---DVALVTTDT-QRVGGREQLHSY-G-----RQ-LGIAVHEA 413 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCC---ceEEEeccc-ccccHHHHHHHh-h-----cc-cCceeEec
Confidence 35679999999999999999999999876421 1122 688888763 322112222211 0 01 12333344
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhh
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAAL 151 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~ 151 (302)
.+..++...+..+ ...++|+||.....
T Consensus 414 ~d~~~L~~aL~~l-----------~~~DLVLIDTaG~s 440 (559)
T PRK12727 414 DSAESLLDLLERL-----------RDYKLVLIDTAGMG 440 (559)
T ss_pred CcHHHHHHHHHHh-----------ccCCEEEecCCCcc
Confidence 4444554444322 23599999987753
No 326
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=98.07 E-value=2e-05 Score=74.13 Aligned_cols=129 Identities=15% Similarity=0.227 Sum_probs=80.7
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+.+++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||+||+.+..+.. ..+ ..|+|.-.-.. .
T Consensus 112 ap~~~~R~~v~epl~TGI~aID~l~--pigrGQR~~I~g~~g~GKt~Lal~~I~~q~---~~d---v~cV~~~IGer--~ 181 (485)
T CHL00059 112 APGIISRRSVYEPLQTGLIAIDSMI--PIGRGQRELIIGDRQTGKTAVATDTILNQK---GQN---VICVYVAIGQK--A 181 (485)
T ss_pred CCCchhccCCCcccccCceeecccc--ccccCCEEEeecCCCCCHHHHHHHHHHhcc---cCC---eEEEEEEecCC--c
Confidence 3457788888999999999999987 577999999999999999999887666542 222 26788775432 2
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEE-EeCCCHHHHHHHH-----HHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFV-QSVHSVDQLLDIM-----PKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~~~l~~~l-----~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
....++.+.+.. ...+++..+ ....+.......+ ..+.+++.. .+.--|+|+|+++.+.
T Consensus 182 rev~e~~~~l~~---~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~----~G~~VLlv~DdlTr~A 246 (485)
T CHL00059 182 SSVAQVVTTLQE---RGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMY----RGRHTLIIYDDLSKQA 246 (485)
T ss_pred hHHHHHHHHhhc---ccchhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHH----cCCCEEEEEcChhHHH
Confidence 233333333221 234555443 3322221111111 123444444 3444889999999865
No 327
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=3.9e-05 Score=65.94 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=30.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 18 ~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 18 VLKDI-NFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45554 4578999999999999999999999888764
No 328
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.07 E-value=1.2e-05 Score=74.98 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=76.9
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+.+++....+.+.||+..+|.++ -+..|+.+.|.|++|+|||||+..++.+.. .+ -++|.-.... .
T Consensus 133 ~p~p~~R~~i~~~l~TGi~vid~l~--~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~d----v~V~~liGER--g 200 (439)
T PRK06936 133 APAPMSRRLIETPLSLGVRVIDGLL--TCGEGQRMGIFAAAGGGKSTLLASLIRSAE----VD----VTVLALIGER--G 200 (439)
T ss_pred CCChHHccccCCCCcCCcceeeeeE--EecCCCEEEEECCCCCChHHHHHHHhcCCC----CC----EEEEEEEccC--c
Confidence 3456677778999999999999985 689999999999999999999988877652 11 4666643322 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEE-EeCCCHHHHHHH-----HHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFV-QSVHSVDQLLDI-----MPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~~~l~~~-----l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
+...++.+... . ...+++..+ ....+..-.... -..+.+++.+ .++--++++||++.+.
T Consensus 201 rEv~ef~~~~l--~-~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd----~G~~Vll~~DslTR~A 265 (439)
T PRK06936 201 REVREFIESDL--G-EEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRD----QGKRVLLLMDSVTRFA 265 (439)
T ss_pred HHHHHHHHHHh--c-ccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCCCEEEeccchhHHH
Confidence 22333322211 0 122444333 333222111111 1134445544 2444888999999865
No 329
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.06 E-value=3.6e-05 Score=73.38 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHcc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQ 63 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~ 63 (302)
|+++..-+.|+||||+|||+++..++....
T Consensus 212 gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 212 DLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred cCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 677767799999999999999999988763
No 330
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=3.5e-05 Score=71.87 Aligned_cols=125 Identities=16% Similarity=0.196 Sum_probs=76.2
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHH
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRR 88 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~r 88 (302)
+.++.....+.+.||+..+|.++ .+.+|+.+.|+|++|+|||+|+..++.+.. .+. .++.+..+......+
T Consensus 129 ~~~~r~~i~~~l~TGiraID~ll--~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~---gvI~~iGerg~ev~e 199 (432)
T PRK06793 129 HAFEREEITDVFETGIKSIDSML--TIGIGQKIGIFAGSGVGKSTLLGMIAKNAK----ADI---NVISLVGERGREVKD 199 (432)
T ss_pred CchheechhhccCCCCEEEeccc--eecCCcEEEEECCCCCChHHHHHHHhccCC----CCe---EEEEeCCCCcccHHH
Confidence 45555666678899999999976 688999999999999999999988887752 121 455555555444433
Q ss_pred H-HHHHHHhCCCCCCCCCCc-EEEEeCCCHHHHHH-----HHHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 89 L-HQLSHTFRPSNDHNPCDY-IFVQSVHSVDQLLD-----IMPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 89 l-~~i~~~~~~~~~~~~l~~-i~~~~~~~~~~l~~-----~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
+ ++.... ..+++ +.+....+...... +...+.+++.+ .++..++++|+++.+..
T Consensus 200 ~~~~~l~~-------~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~----~G~~VLlilDslTr~a~ 260 (432)
T PRK06793 200 FIRKELGE-------EGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRD----QGNNVLLMMDSVTRFAD 260 (432)
T ss_pred HHHHHhhh-------cccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCCcEEEEecchHHHHH
Confidence 3 323221 11233 33333322211111 11223344443 34559999999998653
No 331
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.06 E-value=6e-05 Score=72.91 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 15 ~l~~i-s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 15 VLKNI-SFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45544 4578999999999999999999999888863
No 332
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.06 E-value=7.8e-05 Score=63.86 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|+|||||+..++...
T Consensus 23 il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 23 VLKNV-SLTVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568899999999999999999998887754
No 333
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.06 E-value=2.3e-05 Score=76.23 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=30.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+.+.|+||+|||||||+..++...
T Consensus 333 ~l~~~-~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 333 TLRGI-SFRLQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred ccccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568999999999999999999998888765
No 334
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.06 E-value=4.7e-05 Score=66.07 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ .--+.+|+++.|.|++|+|||||+..++...
T Consensus 17 ~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 17 ALNDL-SLYVDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred Eeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568899999999999999999999888764
No 335
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=98.05 E-value=1.8e-05 Score=75.24 Aligned_cols=128 Identities=15% Similarity=0.259 Sum_probs=80.2
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR 87 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~ 87 (302)
.+.+++....+.+.||+..+|-++ -+.+|+-..|.|++|+|||+|++.+..+.. ..+ ..|+|.-.-.. .+
T Consensus 133 p~~~~R~~i~~pl~TGi~aID~l~--pigrGQr~~I~g~~g~GKt~Lal~~i~~~~---~~d---v~~V~~~IGer--~r 202 (501)
T TIGR00962 133 PGVMERKSVHEPLQTGIKAIDAMI--PIGRGQRELIIGDRQTGKTAVAIDTIINQK---DSD---VYCVYVAIGQK--AS 202 (501)
T ss_pred CChhhcCCcCceeccCCceeeccC--CcccCCEEEeecCCCCCccHHHHHHHHhhc---CCC---eEEEEEEccCC--hH
Confidence 357788888999999999999987 577999999999999999999876655542 222 25788875432 22
Q ss_pred HHHHHHHHhCCCCCCCCCCcEEE-EeCCCHHHHHHHH-----HHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 88 RLHQLSHTFRPSNDHNPCDYIFV-QSVHSVDQLLDIM-----PKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 88 rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~~~l~~~l-----~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
...++.+.+.. ...+++..+ ....+.......+ ..+.+++.+ .+.--|+++|+++.+.
T Consensus 203 ev~e~~~~~~~---~~~l~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd----~G~~VLlv~Ddltr~A 266 (501)
T TIGR00962 203 TVAQVVRKLEE---HGAMDYTIVVAATASDSASLQYLAPYTGCTMAEYFRD----NGKHALIIYDDLSKHA 266 (501)
T ss_pred HHHHHHHHHHh---cCccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHH----cCCCEEEEecchHHHH
Confidence 33333333221 134555444 3222211111111 233445544 3344899999999875
No 336
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.05 E-value=1.9e-05 Score=67.45 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 16 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 16 TLSNI-NIRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred ceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45543 4468899999999999999999999888764
No 337
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.04 E-value=2.3e-05 Score=68.20 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=29.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.|+.+ +.-+.+|+++.|+|++|+|||||+..++..
T Consensus 16 ~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 16 ILRGL-NLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45544 457899999999999999999999888775
No 338
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.04 E-value=1.3e-05 Score=77.32 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 278 ~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 278 KVRDI-SFSVCRGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred cccce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35544 4468999999999999999999999888754
No 339
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=6.6e-05 Score=65.14 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=29.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 17 il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 17 ALFDI-TLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34443 4468899999999999999999999888754
No 340
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.04 E-value=1.2e-05 Score=70.07 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=28.2
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
|+.+ +--+.+|+++.|.|++|||||||+..++..
T Consensus 12 l~~v-sl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 12 LGPL-SAEVRAGEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred ecce-EEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4443 346889999999999999999999888765
No 341
>PRK10867 signal recognition particle protein; Provisional
Probab=98.04 E-value=6.6e-05 Score=70.33 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=34.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcC-CCCCCeEEEEeCCCCCCHH
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSH-GGLSASSLYLHTEFPFPMR 87 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~-gg~~~~vlyid~e~~~~~~ 87 (302)
..++.++|++|+||||++..+|..+. .. |. +|++++++ ++.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~---~~~G~---kV~lV~~D-~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLK---KKKKK---KVLLVAAD-VYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH---HhcCC---cEEEEEcc-ccchH
Confidence 47999999999999999999998764 34 54 89999987 45443
No 342
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=8.9e-06 Score=71.23 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|.|++|||||||+..++...
T Consensus 17 il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 17 ILNDL-SLSLPTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EEeee-eeEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 44444 4568899999999999999999998887753
No 343
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.04 E-value=2.5e-05 Score=76.38 Aligned_cols=91 Identities=12% Similarity=0.137 Sum_probs=54.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHH-HHHHhCCC--C
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQ-LSHTFRPS--N 100 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~-i~~~~~~~--~ 100 (302)
.|+++ +-.+++|+.+.|+||+||||||++.-+++... +..| .++||..+ ..+...+++ ++-..+.. .
T Consensus 344 vl~~i-s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G-----~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF 415 (567)
T COG1132 344 VLKDI-SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSG-----EILIDGIDIRDISLDSLRKRIGIVSQDPLLF 415 (567)
T ss_pred cccCc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCC-----eEEECCEehhhcCHHHHHHhccEEcccceee
Confidence 45554 45799999999999999999999988887753 1233 46666432 344444433 22111110 1
Q ss_pred CCCCCCcEEEEeC-CCHHHHHHHHH
Q 022155 101 DHNPCDYIFVQSV-HSVDQLLDIMP 124 (302)
Q Consensus 101 ~~~~l~~i~~~~~-~~~~~l~~~l~ 124 (302)
..++.+|+.+... .+.+++.+.+.
T Consensus 416 ~~TI~~NI~~g~~~at~eei~~a~k 440 (567)
T COG1132 416 SGTIRENIALGRPDATDEEIEEALK 440 (567)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHH
Confidence 1345567777654 35555555443
No 344
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.03 E-value=6.6e-06 Score=71.31 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=84.9
Q ss_pred CChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCC-CCeEEEEeCCCC-CCHHHHHHHHHHhCCCC
Q 022155 23 GCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGL-SASSLYLHTEFP-FPMRRLHQLSHTFRPSN 100 (302)
Q Consensus 23 G~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~-~~~vlyid~e~~-~~~~rl~~i~~~~~~~~ 100 (302)
|...||--+ .+|.-.+|.|+|++|||||++...++... -| ..|.. -..-+++|++.. +-+..-+.++..|+.-.
T Consensus 11 G~~~l~a~~--~~p~~GvTAlFG~SGsGKTslin~IaGL~-rP-deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR 86 (352)
T COG4148 11 GNFALDANF--TLPARGITALFGPSGSGKTSLINMIAGLT-RP-DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR 86 (352)
T ss_pred CceEEEEec--cCCCCceEEEecCCCCChhhHHHHHhccC-Cc-cccEEEECCEEeecccCCcccChhhheeeeEeeccc
Confidence 444555433 56666899999999999999998887764 22 33310 002356777653 22222334444443211
Q ss_pred --CC-CCCCcEEEEeCC-CHHHHHHHHH--HHHHHHHhc----------------cCCCCCeeEEEEechhhhhhhccCC
Q 022155 101 --DH-NPCDYIFVQSVH-SVDQLLDIMP--KIESFIKNS----------------SNSRLPIRLIVIDSIAALFRSDFDN 158 (302)
Q Consensus 101 --~~-~~l~~i~~~~~~-~~~~l~~~l~--~l~~~l~~~----------------~~~~~~~~lvVIDsi~~~~~~~~~~ 158 (302)
+. .+-.|+.+-... +..++..++. .|..++.+. +.- ..++|+..|+.-+-.
T Consensus 87 LFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALL-t~P~LLLmDEPLaSL------ 159 (352)
T COG4148 87 LFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALL-TAPELLLMDEPLASL------ 159 (352)
T ss_pred cccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHh-cCCCeeeecCchhhc------
Confidence 11 233444442222 2223322221 223333221 001 134888888865532
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeccccc
Q 022155 159 TMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDL 197 (302)
Q Consensus 159 ~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~ 197 (302)
|.. | -.+++-.|.+|.++.+++|++++|..+.
T Consensus 160 ---D~~-R---K~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 160 ---DLP-R---KREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred ---ccc-h---hhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence 112 2 1367788899999999999999996543
No 345
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.03 E-value=3.9e-05 Score=62.46 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.3
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
-..|+++.|.|.+|||||||+..+-..
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCiN~L 55 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCINFL 55 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHHHhh
Confidence 457999999999999999999877543
No 346
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.1e-05 Score=75.57 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=66.1
Q ss_pred hCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEE
Q 022155 31 LGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFV 110 (302)
Q Consensus 31 L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~ 110 (302)
|+|.+|+| ++|+||||+|||.||..+|..+ .|-|+.+.++. + |.+++
T Consensus 332 LGGKLPKG--VLLvGPPGTGKTlLARAvAGEA-----------~VPFF~~sGSE----F----------------dEm~V 378 (752)
T KOG0734|consen 332 LGGKLPKG--VLLVGPPGTGKTLLARAVAGEA-----------GVPFFYASGSE----F----------------DEMFV 378 (752)
T ss_pred ccCcCCCc--eEEeCCCCCchhHHHHHhhccc-----------CCCeEeccccc----h----------------hhhhh
Confidence 47889999 8999999999999999888775 45566555431 1 22222
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEE
Q 022155 111 QSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLV 190 (302)
Q Consensus 111 ~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv 190 (302)
-. ....+.+++.... ...+.+|+||.|.++-..-.+. +...-.+.+.+++..|.-+.+.-++.||.
T Consensus 379 Gv--GArRVRdLF~aAk---------~~APcIIFIDEiDavG~kR~~~---~~~y~kqTlNQLLvEmDGF~qNeGiIvig 444 (752)
T KOG0734|consen 379 GV--GARRVRDLFAAAK---------ARAPCIIFIDEIDAVGGKRNPS---DQHYAKQTLNQLLVEMDGFKQNEGIIVIG 444 (752)
T ss_pred cc--cHHHHHHHHHHHH---------hcCCeEEEEechhhhcccCCcc---HHHHHHHHHHHHHHHhcCcCcCCceEEEe
Confidence 11 1111222222211 1345999999999964221111 11122334566777777666554555554
Q ss_pred Eec
Q 022155 191 TNQ 193 (302)
Q Consensus 191 ~n~ 193 (302)
-+.
T Consensus 445 ATN 447 (752)
T KOG0734|consen 445 ATN 447 (752)
T ss_pred ccC
Confidence 433
No 347
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.03 E-value=2.6e-05 Score=70.09 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|+|||||+..++...
T Consensus 17 ~l~~i-s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 17 ALDEV-SFEAQKGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred EEEEe-EEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568999999999999999999998887653
No 348
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.02 E-value=2.2e-05 Score=77.05 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=35.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+.+.|+||+|||||||+..++... ++..| .++++..
T Consensus 350 ~l~~i-~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G-----~i~~~g~ 397 (585)
T TIGR01192 350 GVFDV-SFEAKAGQTVAIVGPTGAGKTTLINLLQRVY--DPTVG-----QILIDGI 397 (585)
T ss_pred cccce-eEEEcCCCEEEEECCCCCCHHHHHHHHccCC--CCCCC-----EEEECCE
Confidence 34443 4468999999999999999999998887764 32333 4666654
No 349
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.02 E-value=2.1e-05 Score=73.27 Aligned_cols=53 Identities=28% Similarity=0.244 Sum_probs=45.7
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.+++....+.+.||+..+|.++ -+.+|+.+.|+|++|+|||||+..++...
T Consensus 134 ~~p~~R~~i~e~l~TGi~aID~ll--~i~~GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 134 INPLSRRPITEPLDVGVRAINAML--TVGKGQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred CChhhcCCCCCcccccceeecceE--EEcCCCEEEEECCCCCChhHHHHHhccCC
Confidence 345667777889999999999986 68899999999999999999998887643
No 350
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=98.02 E-value=2.4e-05 Score=73.60 Aligned_cols=131 Identities=21% Similarity=0.254 Sum_probs=81.0
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+.+++....+.+.||+..+|-++ -+.+|+-+.|+|++|+|||+|+..++.+.... ... .++|.-.... .
T Consensus 114 ~p~~~~R~~~~e~l~TGir~ID~l~--pigkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~--~~d---v~V~~liGER--~ 184 (461)
T PRK12597 114 IPPLAEQDTSTEILETGIKVIDLLC--PIAKGGKTGLFGGAGVGKTVLMMELIFNISKQ--HSG---SSVFAGVGER--S 184 (461)
T ss_pred CcChhhcCCcCcceecCCeeecccC--ccccCCEEEeecCCCCChhHHHHHHHHHHHhh--CCC---EEEEEcCCcc--h
Confidence 4567888888999999999999987 57799999999999999999999999887421 122 5667653322 2
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEE-EeCCCHH---HHHH--HHHHHHHHHHhccCCC-CCeeEEEEechhhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFV-QSVHSVD---QLLD--IMPKIESFIKNSSNSR-LPIRLIVIDSIAALFR 153 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~~---~l~~--~l~~l~~~l~~~~~~~-~~~~lvVIDsi~~~~~ 153 (302)
+...++...+.. ...+++..+ ....+.. .+.. .-..+.+++.+ . +.--|+++||++.+..
T Consensus 185 rEv~ef~~~~~~---~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfrd----~~G~~VLl~~DslTR~A~ 251 (461)
T PRK12597 185 REGHELYHEMKE---SGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLRD----EEKEDVLLFIDNIFRFVQ 251 (461)
T ss_pred HHHHHHHHHHHh---cCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHHHHH----hcCCceEEEeccchHHHH
Confidence 223333333211 134455433 3322211 1111 11233445543 2 3447899999998653
No 351
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=98.01 E-value=3.2e-05 Score=73.08 Aligned_cols=128 Identities=18% Similarity=0.231 Sum_probs=78.7
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHH
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRR 88 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~r 88 (302)
+.+++....+.+.||+..+|-++ -+-+|+=..|+|++|+|||+|++.+..+.. ..+ ..|+|.-.-..- ..
T Consensus 135 ~~~~R~~v~epl~TGI~aID~l~--pigrGQR~~Ifg~~g~GKT~Lal~~I~~q~---~~d---v~~V~~~IGeR~--re 204 (497)
T TIGR03324 135 PIMDRAPVTVPLQTGLKVIDALI--PIGRGQRELILGDRQTGKTAIAIDTILNQK---GRN---VLCIYCAIGQRA--SA 204 (497)
T ss_pred CccccCCCCchhhcCCEEEeccC--CcccCCEEEeecCCCCCHHHHHHHHHHHhc---CCC---cEEEEEEeccCc--HH
Confidence 46778888999999999999987 577999999999999999999875444432 222 247887754321 22
Q ss_pred HHHHHHHhCCCCCCCCCCcEEE-EeCCCHHHHHHHH-----HHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 89 LHQLSHTFRPSNDHNPCDYIFV-QSVHSVDQLLDIM-----PKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 89 l~~i~~~~~~~~~~~~l~~i~~-~~~~~~~~l~~~l-----~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
..++.+.+.. ...+++..+ ....+.......+ ..+.+++.+ .+.--|+++|+++.+..
T Consensus 205 v~e~i~~l~~---~~~l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyfrd----~G~~VLlv~DdlTr~A~ 268 (497)
T TIGR03324 205 VAKVVANLRE---HGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFME----QGRDVLIVYDDLTQHAR 268 (497)
T ss_pred HHHHHHHhhh---cCCcceeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh----CCCCEEEEEcChhHHHH
Confidence 3333333221 234555443 3322211111111 123444543 34458999999998653
No 352
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.01 E-value=1.7e-05 Score=65.64 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=31.0
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+..+.-+.|+|++|+|||.||..++..+. ..|. .|+|++..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~---~~g~---~v~f~~~~ 84 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAI---RKGY---SVLFITAS 84 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHH---HTT-----EEEEEHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhc---cCCc---ceeEeecC
Confidence 55788899999999999999999988875 4555 89999854
No 353
>PRK05922 type III secretion system ATPase; Validated
Probab=98.01 E-value=4.8e-05 Score=70.97 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=46.1
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.+.+++....+.+.||+..+|.++ -+.+|+.+.|+|++|+|||+|+.+++...
T Consensus 128 ~~~~~~R~~i~e~l~TGIr~ID~ll--~I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 128 PPSPMSRQPIQEIFPTGIKAIDAFL--TLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred CCChhhcCCcceecCCCceeecceE--EEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 3345677777889999999999986 68899999999999999999998887664
No 354
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.00 E-value=3.7e-05 Score=71.74 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=34.6
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+--+.+|+.+.|.||+|||||||+..++..+ .| ..| .+.+|.-
T Consensus 356 sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p-~~G-----~VRLDga 398 (580)
T COG4618 356 SFALQAGEALGIIGPSGSGKSTLARLLVGIW-PP-TSG-----SVRLDGA 398 (580)
T ss_pred eeEecCCceEEEECCCCccHHHHHHHHHccc-cc-CCC-----cEEecch
Confidence 3468899999999999999999999998886 33 333 5778765
No 355
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.00 E-value=4.9e-05 Score=74.13 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=34.9
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
|+.+ +--+++|+++.|+||+|||||||+.-++.... +..| .++++..
T Consensus 358 l~~v-s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G-----~i~~~g~ 404 (555)
T TIGR01194 358 LGPI-DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEG-----EILLDGA 404 (555)
T ss_pred eccc-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCc-----EEEECCE
Confidence 4443 44689999999999999999999988877652 2333 4666654
No 356
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=98.00 E-value=3e-05 Score=73.48 Aligned_cols=128 Identities=16% Similarity=0.268 Sum_probs=79.7
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR 87 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~ 87 (302)
.+.+++....+.+.||+..+|-++ -+.+|+-..|.|++|+|||+|++....+.. ..+ ..|+|.-.-.. .+
T Consensus 134 p~~~~R~~v~epl~TGIkaID~l~--pigrGQR~~I~g~~g~GKt~Lal~~i~~~~---~~d---v~~V~~~IGer--~r 203 (502)
T PRK13343 134 PAIIERDFVTEPLQTGIKVVDALI--PIGRGQRELIIGDRQTGKTAIAIDAIINQK---DSD---VICVYVAIGQK--AS 203 (502)
T ss_pred cChhhcCCCCcccccCCceecccc--ccccCCEEEeeCCCCCCccHHHHHHHHhhc---CCC---EEEEEEEeccC--hH
Confidence 346777788999999999999987 577999999999999999999876665542 222 25688775433 22
Q ss_pred HHHHHHHHhCCCCCCCCCCcEEE-EeCCCHHHHHHHH-----HHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 88 RLHQLSHTFRPSNDHNPCDYIFV-QSVHSVDQLLDIM-----PKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 88 rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~~~l~~~l-----~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
...++.+.+.. ...+++..+ ....+.......+ ..+.+++.+ ++.--|+++|+++.+.
T Consensus 204 ev~e~~~~l~~---~~~l~~tvvV~atsd~~~~~r~~ap~~a~aiAEyfrd----~G~~VLlv~DdlTr~A 267 (502)
T PRK13343 204 AVARVIETLRE---HGALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRD----QGQDALIVYDDLSKHA 267 (502)
T ss_pred HHHHHHHHHHh---cCccceeEEEEecccccHHHHHHHHHHHHHHHHHHHh----CCCCEEEEecchHHHH
Confidence 33344433221 134555433 3222221111111 123344433 3445899999999874
No 357
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=98.00 E-value=3.2e-05 Score=73.56 Aligned_cols=129 Identities=16% Similarity=0.241 Sum_probs=80.9
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+.+++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||+||+....+.. ..+ ..|+|.-.-.. .
T Consensus 133 ~p~~~~R~~~~~~l~TGi~~ID~l~--pigrGQr~~Ifg~~g~GKt~lal~~i~~~~---~~d---v~~V~~~IGer--~ 202 (502)
T PRK09281 133 APGVIDRKSVHEPLQTGIKAIDAMI--PIGRGQRELIIGDRQTGKTAIAIDTIINQK---GKD---VICIYVAIGQK--A 202 (502)
T ss_pred CcCccccCCccceeecCCeeeeccc--ccccCcEEEeecCCCCCchHHHHHHHHHhc---CCC---eEEEEEEecCC--h
Confidence 3457788888999999999999987 577999999999999999999877665532 222 25788875432 2
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEEE-eCCCHHHHHHHH-----HHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFVQ-SVHSVDQLLDIM-----PKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~~-~~~~~~~l~~~l-----~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
+...++.+.+.. ...+++..+. ...+..-....+ ..+.+++.. .+.--|||+|+++.+.
T Consensus 203 ~ev~e~~~~~~~---~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd----~G~~VLli~DdlTr~A 267 (502)
T PRK09281 203 STVAQVVRKLEE---HGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMD----NGKDALIVYDDLSKQA 267 (502)
T ss_pred HHHHHHHHHHhh---cCCccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH----cCCCEEEEecCchHHH
Confidence 233333333221 2345554443 222211111111 123444544 3444899999999875
No 358
>PLN03232 ABC transporter C family member; Provisional
Probab=98.00 E-value=2.2e-05 Score=84.49 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=36.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.|+++ +--+++|+.+.|+|++|||||||+..+.+... ... +.++||..+
T Consensus 1251 vL~~i-sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~----G~I~IdG~d 1299 (1495)
T PLN03232 1251 VLHGL-SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEK----GRIMIDDCD 1299 (1495)
T ss_pred ccccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC----ceEEECCEE
Confidence 44444 44789999999999999999999988887652 222 357888653
No 359
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.00 E-value=1.6e-05 Score=79.70 Aligned_cols=48 Identities=23% Similarity=0.253 Sum_probs=36.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+++ +--+++|+.+.|+||+||||||++..++.... ... +.+++|..
T Consensus 496 vL~~i-sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~----G~I~idg~ 543 (711)
T TIGR00958 496 VLKGL-TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTG----GQVLLDGV 543 (711)
T ss_pred cccCc-eEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCC----CEEEECCE
Confidence 45554 45789999999999999999999998888753 233 25777754
No 360
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.00 E-value=3.1e-05 Score=82.96 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=32.0
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHcc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQ 63 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~ 63 (302)
+.|+.+ +--+++|+.+.|+||+||||||++..+++.+.
T Consensus 1182 ~vL~~l-sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265 1182 PIYKDL-TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred ccccCe-eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 346554 45799999999999999999999998888764
No 361
>PRK08181 transposase; Validated
Probab=97.99 E-value=3.7e-05 Score=67.65 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=33.4
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+..+.-+.|+||+|+|||.|+..++..++ ..|. +|+|++..
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~---~v~f~~~~ 143 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALI---ENGW---RVLFTRTT 143 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHH---HcCC---ceeeeeHH
Confidence 45678899999999999999999988764 4454 78999853
No 362
>PLN03130 ABC transporter C family member; Provisional
Probab=97.98 E-value=2.3e-05 Score=84.77 Aligned_cols=148 Identities=11% Similarity=0.138 Sum_probs=81.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHHHHHhCCCCC--
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQLSHTFRPSND-- 101 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i~~~~~~~~~-- 101 (302)
.|+++ +--|++|+.+.|+|++|||||||+..+.+.+. +.. +.++||... ..+...+++... +-.+++
T Consensus 1254 VL~~i-s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~-----G~I~IDG~dI~~i~l~~LR~~Is-iVpQdp~L 1324 (1622)
T PLN03130 1254 VLHGL-SFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LER-----GRILIDGCDISKFGLMDLRKVLG-IIPQAPVL 1324 (1622)
T ss_pred eecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCC-----ceEEECCEecccCCHHHHHhccE-EECCCCcc
Confidence 45554 45789999999999999999999988887652 233 358888653 334444433211 111111
Q ss_pred --CCCCCcEEEEeCCCHHHHHHHHHH--HHHHHHhc---------------------------cCCCCCeeEEEEechhh
Q 022155 102 --HNPCDYIFVQSVHSVDQLLDIMPK--IESFIKNS---------------------------SNSRLPIRLIVIDSIAA 150 (302)
Q Consensus 102 --~~~l~~i~~~~~~~~~~l~~~l~~--l~~~l~~~---------------------------~~~~~~~~lvVIDsi~~ 150 (302)
..+.+|+......+.+++.+.++. +.+.+.+. +. -.+.+++|+|+.++
T Consensus 1325 F~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARAL-Lr~p~ILILDEATS 1403 (1622)
T PLN03130 1325 FSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL-LRRSKILVLDEATA 1403 (1622)
T ss_pred ccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHH-HcCCCEEEEECCCC
Confidence 123344443333444555444432 11221110 00 01348999999888
Q ss_pred hhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccC
Q 022155 151 LFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198 (302)
Q Consensus 151 ~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~ 198 (302)
-...+ .+ ..+.+.|++.. .++|+|++.|-.+.+
T Consensus 1404 aLD~~--------Te-----~~Iq~~I~~~~--~~~TvI~IAHRL~tI 1436 (1622)
T PLN03130 1404 AVDVR--------TD-----ALIQKTIREEF--KSCTMLIIAHRLNTI 1436 (1622)
T ss_pred CCCHH--------HH-----HHHHHHHHHHC--CCCEEEEEeCChHHH
Confidence 55211 11 13344555443 479999999954433
No 363
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.98 E-value=4.9e-05 Score=71.07 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=46.2
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.+.++.....+.+.||+..+|.++ .+.+|+.+.|+|++|+|||||+..++...
T Consensus 136 ~p~~~~r~~v~~~l~TGi~aID~L~--~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 136 APPAMTRARVETGLRTGVRVIDIFT--PLCAGQRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred CCCCeEeecceEEcCCCcEEeeeec--eecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457777788889999999999885 69999999999999999999997776543
No 364
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.98 E-value=0.00011 Score=71.06 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=30.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 299 il~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~ 334 (520)
T TIGR03269 299 AVDNV-SLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred EEeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568999999999999999999998887753
No 365
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.98 E-value=8.2e-05 Score=62.78 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+++.|+||+|+|||||+..++...
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHH
Confidence 46999999999999999999998554
No 366
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=5.4e-05 Score=71.85 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=81.8
Q ss_pred ccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHH-HHHHHHhC
Q 022155 21 TVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRL-HQLSHTFR 97 (302)
Q Consensus 21 ~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl-~~i~~~~~ 97 (302)
+.|-+.+..+ +--+++|+.+.|+|++||||||++.-++... +...| .+.++... .++.+-+ +++..--+
T Consensus 331 ~~g~~~l~~l-~~t~~~g~~talvG~SGaGKSTLl~lL~G~~--~~~~G-----~I~vng~~l~~l~~~~~~k~i~~v~Q 402 (559)
T COG4988 331 PDGKPALSDL-NLTIKAGQLTALVGASGAGKSTLLNLLLGFL--APTQG-----EIRVNGIDLRDLSPEAWRKQISWVSQ 402 (559)
T ss_pred CCCCcccCCc-eeEecCCcEEEEECCCCCCHHHHHHHHhCcC--CCCCc-----eEEECCccccccCHHHHHhHeeeeCC
Confidence 3343444443 3468999999999999999999998777664 32333 35554332 2333322 22221111
Q ss_pred CC--CCCCCCCcEEEEeC-CCHHHHHHHHHH--HHHHHHh----------c---------------cCCCCCeeEEEEec
Q 022155 98 PS--NDHNPCDYIFVQSV-HSVDQLLDIMPK--IESFIKN----------S---------------SNSRLPIRLIVIDS 147 (302)
Q Consensus 98 ~~--~~~~~l~~i~~~~~-~~~~~l~~~l~~--l~~~l~~----------~---------------~~~~~~~~lvVIDs 147 (302)
.. .+...-+|+.+.++ .+.+++.+.+++ +.+++.. . ..--.+..++++|+
T Consensus 403 ~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE 482 (559)
T COG4988 403 NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE 482 (559)
T ss_pred CCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 10 11234466666555 344555544432 1222211 0 00012358999999
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeccc
Q 022155 148 IAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVV 195 (302)
Q Consensus 148 i~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~ 195 (302)
.++....+ .+ ..+.+.|.++++ +.|||+++|--
T Consensus 483 pTA~LD~e--------tE-----~~i~~~l~~l~~--~ktvl~itHrl 515 (559)
T COG4988 483 PTAHLDAE--------TE-----QIILQALQELAK--QKTVLVITHRL 515 (559)
T ss_pred CccCCCHh--------HH-----HHHHHHHHHHHh--CCeEEEEEcCh
Confidence 99865322 11 245667777775 47777777753
No 367
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.98 E-value=2.4e-05 Score=73.01 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=48.1
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.+.++.....+.+.||+..+|-++ -+.+|+.+.|+|++|+|||+|+.+++...
T Consensus 129 ~p~~~~R~~~~~~l~TGir~ID~l~--~i~~Gqri~I~G~sG~GKTtLL~~I~~~~ 182 (442)
T PRK08927 129 PPPAHSRARVGEPLDLGVRALNTFL--TCCRGQRMGIFAGSGVGKSVLLSMLARNA 182 (442)
T ss_pred CcChHHcCCcccccccceEEEeeee--EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4567788888999999999999987 58899999999999999999998888765
No 368
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=3.2e-05 Score=72.72 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=37.5
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
|+.+ ..-||+|+-+.|+|++||||||++..+..... ..| -++||+.+
T Consensus 368 L~gv-sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG-----~I~IdG~d 414 (591)
T KOG0057|consen 368 LKGV-SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSG-----SILIDGQD 414 (591)
T ss_pred ecce-eEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCC-----cEEECCee
Confidence 4443 45799999999999999999999998888753 334 48999764
No 369
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=97.97 E-value=0.00015 Score=65.48 Aligned_cols=125 Identities=11% Similarity=0.105 Sum_probs=76.6
Q ss_pred cCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHH
Q 022155 12 DNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQ 91 (302)
Q Consensus 12 ~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~ 91 (302)
++....+.+.||+..+|-++ -+.+|+-..|.|++|+|||+++.+++.+.. .+ -|+|+-..+. .....+
T Consensus 133 ~r~~~~~pL~TGirvID~l~--Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~d----vvVyv~iGER--g~Ev~e 200 (369)
T cd01134 133 EKLPPNEPLLTGQRVLDTLF--PVVKGGTAAIPGPFGCGKTVIQQSLSKYSN----SD----IVIYVGCGER--GNEMTE 200 (369)
T ss_pred ccCCCCCchhccchhhhccc--cccCCCEEEEECCCCCChHHHHHHHHhCCC----CC----EEEEEEeCCC--hHHHHH
Confidence 66677889999999999987 578999999999999999999999887642 22 6888876432 223333
Q ss_pred HHHHhCC----CCCCCCCCcEEE-EeCCCHH---HHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 92 LSHTFRP----SNDHNPCDYIFV-QSVHSVD---QLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 92 i~~~~~~----~~~~~~l~~i~~-~~~~~~~---~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
+...|.. ......+++..+ ....+.. ..... -..+.+++.+ ...--++++||++...
T Consensus 201 ~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd----~G~dVll~~Ds~tR~A 267 (369)
T cd01134 201 VLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRD----MGYNVALMADSTSRWA 267 (369)
T ss_pred HHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCCCEEEEEcChhHHH
Confidence 3333321 111234555433 3222211 11111 1123444443 2333788899998754
No 370
>PRK12377 putative replication protein; Provisional
Probab=97.96 E-value=4.8e-05 Score=66.18 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=30.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.-+.|+|+||+|||+|+..++..+. ..|. .|+|++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~---~~g~---~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL---AKGR---SVIVVTVP 138 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH---HcCC---CeEEEEHH
Confidence 5689999999999999999988874 4454 78998865
No 371
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.96 E-value=3.9e-05 Score=72.03 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=54.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH---HHHHHHHHHhCCCCCCCCCCcEEEEe
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM---RRLHQLSHTFRPSNDHNPCDYIFVQS 112 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~---~rl~~i~~~~~~~~~~~~l~~i~~~~ 112 (302)
..|.++.|+||+|+||||++..+|..+.+. ..|. +|.+|+++. +.. +.+...+.. .++-+..
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~---~V~li~~D~-~r~~a~eqL~~~a~~----------~~vp~~~ 283 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALL-YGKK---KVALITLDT-YRIGAVEQLKTYAKI----------MGIPVEV 283 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCC---eEEEEECCc-cHHHHHHHHHHHHHH----------hCCceEc
Confidence 457899999999999999999999876410 2233 899999873 322 222222221 1223333
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhh
Q 022155 113 VHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAA 150 (302)
Q Consensus 113 ~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~ 150 (302)
..+..++...+..+ .+.++|+||....
T Consensus 284 ~~~~~~l~~~l~~~-----------~~~DlVlIDt~G~ 310 (424)
T PRK05703 284 VYDPKELAKALEQL-----------RDCDVILIDTAGR 310 (424)
T ss_pred cCCHHhHHHHHHHh-----------CCCCEEEEeCCCC
Confidence 44444544433321 2459999998765
No 372
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.96 E-value=1.9e-05 Score=81.14 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=30.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-|+.+ .|-+.||.+|.|.|++|+|||||+.-+|...
T Consensus 806 LL~~V-~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~ 841 (1391)
T KOG0065|consen 806 LLNNV-SGAFKPGVLTALMGESGAGKTTLLDVLAGRK 841 (1391)
T ss_pred hhhcC-ceEecCCceeehhcCCCCchHHHHHHHhcCc
Confidence 45555 5779999999999999999999998887653
No 373
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.96 E-value=4.3e-05 Score=75.39 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=31.9
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ ++-+++|+++.|.||+|+|||||+..++...
T Consensus 39 ~iL~~v-s~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~ 75 (617)
T TIGR00955 39 HLLKNV-SGVAKPGELLAVMGSSGAGKTTLMNALAFRS 75 (617)
T ss_pred ccccCC-EEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 356666 6789999999999999999999998887754
No 374
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=97.96 E-value=2.4e-05 Score=63.91 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=67.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEe-CCCHHHH
Q 022155 41 TELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQS-VHSVDQL 119 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~-~~~~~~l 119 (302)
|.|.|...||||.+|.+++.. .++ +++||.|-..++.+-.++|...... .+ ++..... +.+ +
T Consensus 1 ilv~GG~rSGKS~~Ae~la~~------~~~---~~~YiAT~~~~D~em~~RI~~H~~~-R~----~~w~tiE~~~~---l 63 (167)
T PF02283_consen 1 ILVTGGARSGKSSFAERLALS------FGG---PVTYIATARPFDEEMRERIARHRQR-RP----KGWITIEEPRD---L 63 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHTS--------S---CEEEEESSHHHHHHHHHHHHHHHHH-SS----TCEEEEE-SS----G
T ss_pred CEEeCCCCcchHHHHHHHHHh------cCC---CcEEEeCCCCCCHHHHHHHHHHHHh-CC----CCcEEEecchh---H
Confidence 578999999999999999843 223 7999999876655433444433211 11 2333333 232 2
Q ss_pred HHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccC
Q 022155 120 LDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198 (302)
Q Consensus 120 ~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~ 198 (302)
.+.+... .+-+.|+||+++......+.....+ .......+...+..+.+...-.|||+|.+...+
T Consensus 64 ~~~~~~~-----------~~~~~vLlDclt~wl~n~l~~~~~~---~~~~~~~i~~~l~~l~~~~~~lViVsnEVG~Gi 128 (167)
T PF02283_consen 64 AEALEEL-----------SPGDVVLLDCLTLWLANLLFAEEDD---EEDILEEIERLLEALRERNADLVIVSNEVGWGI 128 (167)
T ss_dssp GGTS-TT-----------S-T-EEEEE-HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--SEEEEEEE---SS-
T ss_pred HHHHHHh-----------ccCCeEEEeCHHHHHHHHHHhccCc---HHHHHHHHHHHHHHHHccCCCEEEEEcCCCCCC
Confidence 2222111 1138999999999876544321101 123344555556666555667788888886543
No 375
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.96 E-value=4e-05 Score=65.84 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=30.6
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 21 ~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 21 RILNDV-SLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred ccccCc-eEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 345554 4578999999999999999999998887764
No 376
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.96 E-value=9e-05 Score=71.84 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=31.3
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 23 ~~l~~i-sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 23 TVVNDV-SLQIEAGETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred eeeece-EEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456665 5578999999999999999999999888764
No 377
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.95 E-value=9.5e-05 Score=69.10 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=46.6
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.+.+++....+.+.||+..+|.++ -+..|+.+.|+|++|+|||+|+..++.+.
T Consensus 128 ~~~~~~R~~i~~~l~tgi~aid~l~--~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 128 PIAAMKRGLIDEVFSVGVKSIDGLL--TCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred CCCHHHcCCcceeccchhHHhhhcc--eecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3456777777888999999999985 68899999999999999999998888765
No 378
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.95 E-value=8.9e-06 Score=73.65 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=31.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+.-+.|+|++|+|||+|+..+|..+. ..|. .|+|++..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~---~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGK---SVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCC---eEEEEEHH
Confidence 46799999999999999999988874 4454 89999965
No 379
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.94 E-value=4.5e-05 Score=68.76 Aligned_cols=54 Identities=24% Similarity=0.249 Sum_probs=45.4
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.+..++....+.+.||+..+|.++ -+.+|+.+.|+|++|+|||+|+..++...
T Consensus 40 ~~~~~~R~~~~~~l~tGi~aiD~l~--~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~ 93 (326)
T cd01136 40 PPNPLKRRPIDEVLPTGVRAIDGLL--TVGKGQRLGIFAGSGVGKSTLLGMIARGT 93 (326)
T ss_pred CcCHHHhccceeEcCCCcEEEeeee--EEcCCcEEEEECCCCCChHHHHHHHhCCC
Confidence 3456667777788999999999985 68899999999999999999988777654
No 380
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.94 E-value=7.6e-05 Score=71.22 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=30.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ .--+.+|+++.|.||+|+|||||+..++...
T Consensus 39 IL~nV-SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 39 ALNNI-SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred EEeee-EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45554 4578999999999999999999999888764
No 381
>PRK13409 putative ATPase RIL; Provisional
Probab=97.94 E-value=7.8e-05 Score=73.00 Aligned_cols=35 Identities=17% Similarity=0.048 Sum_probs=29.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ . -+.+|+++.|+||+|+|||||+..++...
T Consensus 89 ~L~~l-~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l 123 (590)
T PRK13409 89 KLYGL-P-IPKEGKVTGILGPNGIGKTTAVKILSGEL 123 (590)
T ss_pred eEecC-C-cCCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 46665 3 58899999999999999999998887753
No 382
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.94 E-value=5.1e-05 Score=71.26 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=66.3
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
|+.++.-+.|+||||+|||+++..++.... . ..+.+.... +...+ +.
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~------~---~fi~V~~se---------L~~k~-------------~G-- 259 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETS------A---TFLRVVGSE---------LIQKY-------------LG-- 259 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhC------C---CEEEEecch---------hhhhh-------------cc--
Confidence 677888899999999999999999987642 1 234443221 11000 00
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEec
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQ 193 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~ 193 (302)
.....+.+++ ..... ....+|+||.+.+++........+....-+..+..++..|..+....++.||++++
T Consensus 260 e~~~~vr~lF----~~A~~-----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATN 330 (438)
T PTZ00361 260 DGPKLVRELF----RVAEE-----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATN 330 (438)
T ss_pred hHHHHHHHHH----HHHHh-----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecC
Confidence 0111111122 22221 23489999999998743221111110111223445666666655566888888776
Q ss_pred ccccC
Q 022155 194 VVDLM 198 (302)
Q Consensus 194 ~~~~~ 198 (302)
-.+.+
T Consensus 331 r~d~L 335 (438)
T PTZ00361 331 RIESL 335 (438)
T ss_pred ChHHh
Confidence 44433
No 383
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=97.93 E-value=4.9e-05 Score=71.14 Aligned_cols=132 Identities=16% Similarity=0.184 Sum_probs=81.7
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+.+++....+.+.||+..+|-++ -+.+|+-+.|+|++|+|||+|+.+++.+..- .... .++|.-.... .
T Consensus 109 ap~~~~R~~i~e~L~TGIr~ID~l~--pigkGQr~~Ifg~~G~GKt~l~~~~~~~~~~--~~~~---v~V~~~iGeR--~ 179 (449)
T TIGR03305 109 PPTLTRRSSKSEVFETGIKAIDVLV--PLERGGKAGLFGGAGVGKTVLLTEMIHNMVG--QHQG---VSIFCGIGER--C 179 (449)
T ss_pred CCCchhcccCCcccccCceeecccc--ccccCCEEEeecCCCCChhHHHHHHHHHHHh--cCCC---EEEEEEeccC--c
Confidence 4467888888999999999999887 5789999999999999999999999998631 1122 6777654322 2
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEE-EeCCCH---HHHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFV-QSVHSV---DQLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~---~~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
+...++...+.. ...+++..+ ....+. ...... -..+.+++.. ..+.--|+++||++.+..
T Consensus 180 rEv~e~~~~~~~---~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd---~~G~~VLl~~DslTR~A~ 246 (449)
T TIGR03305 180 REGEELYREMKE---AGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRD---DEKQDVLLLIDNIFRFIQ 246 (449)
T ss_pred HHHHHHHHHHhh---ccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH---hcCCceEEEecChHHHHH
Confidence 333333333221 134555443 332221 111111 1123344432 023337899999998753
No 384
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.93 E-value=1.8e-05 Score=66.72 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.2
Q ss_pred CCCC-cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCN-SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G-~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+..| +++.|.||+|+|||||+..++...
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~ 52 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGLLT 52 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 4456 599999999999999999988433
No 385
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.93 E-value=7.5e-05 Score=72.40 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=30.4
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
..|+.+ +--+++|+++.|.||+|||||||+..++..
T Consensus 300 ~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 335 (529)
T PRK15134 300 VVVKNI-SFTLRPGETLGLVGESGSGKSTTGLALLRL 335 (529)
T ss_pred eeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 346655 567899999999999999999999888865
No 386
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.93 E-value=0.00012 Score=63.32 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=31.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.+..+.|+||+|+|||+|+..++..+. ..|. ++.|++.+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~---~v~y~~~~ 82 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELS---QRGR---AVGYVPLD 82 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---hCCC---eEEEEEHH
Confidence 456889999999999999998887664 3343 78999865
No 387
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.93 E-value=4.7e-05 Score=73.30 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=30.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+||+|||||||+..++...
T Consensus 19 il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 19 ALDDI-SFDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred EEeee-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45655 5578999999999999999999998887753
No 388
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.92 E-value=0.00018 Score=61.59 Aligned_cols=123 Identities=10% Similarity=0.123 Sum_probs=67.5
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
.+..|+++.|.||+|+|||+++.+++....++ +.| .|+-.+. ... ...++|+..-.
T Consensus 27 ~~~~g~~~~itG~N~~GKStll~~i~~~~~la--~~G-----~~v~a~~-~~~----------------~~~~~i~~~~~ 82 (222)
T cd03287 27 SAEGGYCQIITGPNMGGKSSYIRQVALITIMA--QIG-----SFVPASS-ATL----------------SIFDSVLTRMG 82 (222)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHHHHHHHH--hCC-----CEEEcCc-eEE----------------eccceEEEEec
Confidence 35679999999999999999999998866443 232 2333221 100 12334433211
Q ss_pred --C----CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcE
Q 022155 114 --H----SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLA 187 (302)
Q Consensus 114 --~----~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~ 187 (302)
. +...+..-+.++..++.. ..+..++++|++..-.. ......+... .++.+.+..+++
T Consensus 83 ~~d~~~~~~StF~~e~~~~~~il~~----~~~~sLvllDE~~~gT~---------~~d~~~i~~~---il~~l~~~~~~~ 146 (222)
T cd03287 83 ASDSIQHGMSTFMVELSETSHILSN----CTSRSLVILDELGRGTS---------THDGIAIAYA---TLHYLLEEKKCL 146 (222)
T ss_pred CccccccccchHHHHHHHHHHHHHh----CCCCeEEEEccCCCCCC---------hhhHHHHHHH---HHHHHHhccCCe
Confidence 1 111222233444555543 22459999999865211 1122222223 344444445899
Q ss_pred EEEEecccc
Q 022155 188 VLVTNQVVD 196 (302)
Q Consensus 188 viv~n~~~~ 196 (302)
+|+++|..+
T Consensus 147 ~i~~TH~~~ 155 (222)
T cd03287 147 VLFVTHYPS 155 (222)
T ss_pred EEEEcccHH
Confidence 999999754
No 389
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=1e-05 Score=77.96 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=30.8
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 19 ~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 19 KALDNV-SLKVRAGEIVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred Eeecce-eEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 356655 4578999999999999999999998888753
No 390
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.92 E-value=5.2e-05 Score=67.30 Aligned_cols=122 Identities=14% Similarity=0.214 Sum_probs=70.7
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH-HHHHHHHHhCCCCCCCCCCcEEEEeCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR-RLHQLSHTFRPSNDHNPCDYIFVQSVH 114 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~-rl~~i~~~~~~~~~~~~l~~i~~~~~~ 114 (302)
....++.|+|++|+|||+||.+++.........+ .++|++.....+.. -+.++...+....... ....
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~----~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 85 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD----GVIWVSLSKNPSLEQLLEQILRQLGEPDSSI-------SDPK 85 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT----EEEEEEEES-SCCHHHHHHHHHHHTCC-STS-------SCCS
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccc----ccccccccccccccccccccccccccccccc-------cccc
Confidence 7889999999999999999999987632222222 68999877655443 3466666654332211 1223
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecc
Q 022155 115 SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194 (302)
Q Consensus 115 ~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~ 194 (302)
+.++ ....+.+.+.. . --|+|+|++..... +..+...+.. ...++.||+|+..
T Consensus 86 ~~~~---~~~~l~~~L~~-----~-~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~~~kilvTTR~ 138 (287)
T PF00931_consen 86 DIEE---LQDQLRELLKD-----K-RCLLVLDDVWDEED----------------LEELREPLPS--FSSGSKILVTTRD 138 (287)
T ss_dssp SHHH---HHHHHHHHHCC-----T-SEEEEEEEE-SHHH----------------H-------HC--HHSS-EEEEEESC
T ss_pred cccc---ccccchhhhcc-----c-cceeeeeeeccccc----------------cccccccccc--ccccccccccccc
Confidence 3333 44555566654 3 49999998765320 2222233322 3468999999865
Q ss_pred c
Q 022155 195 V 195 (302)
Q Consensus 195 ~ 195 (302)
.
T Consensus 139 ~ 139 (287)
T PF00931_consen 139 R 139 (287)
T ss_dssp G
T ss_pred c
Confidence 4
No 391
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.92 E-value=3.5e-05 Score=71.83 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=46.2
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.+.++.....+.+.||+..+|..+ -+.+|+.+.|+|++|+|||+|+..++...
T Consensus 111 ~p~~~~R~~i~~~l~tGi~aiD~~~--~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~ 164 (418)
T TIGR03498 111 PPPAMSRARVGEPLDTGVRVIDTFL--PLCRGQRLGIFAGSGVGKSTLLSMLARNT 164 (418)
T ss_pred CCChhhccCcccccCCccEEEeeec--cccCCcEEEEECCCCCChHHHHHHHhCCC
Confidence 4467778888899999999999765 68999999999999999999997776654
No 392
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.90 E-value=4.1e-05 Score=71.35 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=45.5
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.+.+++....+.+.||+..+|.++ -+.+|+.+.|+|++|+|||+|+..++...
T Consensus 108 ~p~~~~R~~~~~~~~tGi~~iD~l~--~i~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 108 PPNPLKRPRIRDPLETGIKAIDGLL--TIGKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred CcChHHccchhhhccccceeeeeEE--EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456677777789999999999985 68899999999999999999987776654
No 393
>PRK08149 ATP synthase SpaL; Validated
Probab=97.90 E-value=3.5e-05 Score=71.85 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=45.1
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+..++....+.+.||+..+|.++ -+.+|+.+.|+|++|+|||||+..++...
T Consensus 123 ~~~~~R~~i~e~l~tGi~aid~ll--~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~ 175 (428)
T PRK08149 123 PSYAERRPIREPLITGVRAIDGLL--TCGVGQRMGIFASAGCGKTSLMNMLIEHS 175 (428)
T ss_pred CcchhccCccccccCCcEEEeeee--eEecCCEEEEECCCCCChhHHHHHHhcCC
Confidence 346666677889999999999985 68899999999999999999988776643
No 394
>PRK06921 hypothetical protein; Provisional
Probab=97.90 E-value=7.9e-05 Score=65.64 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcC-CCCCCeEEEEeCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSH-GGLSASSLYLHTE 81 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~-gg~~~~vlyid~e 81 (302)
.+.-+.|+|++|+|||+|+..++..+. .. |. .|+|++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~---~~~g~---~v~y~~~~ 155 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM---RKKGV---PVLYFPFV 155 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh---hhcCc---eEEEEEHH
Confidence 367799999999999999999988764 33 44 89999953
No 395
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.89 E-value=0.00019 Score=67.02 Aligned_cols=47 Identities=26% Similarity=0.376 Sum_probs=35.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHH
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQ 91 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~ 91 (302)
..++.++|++|+||||++..+|..+. ..|. +|+.++++ ++.+....+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~---~~G~---kV~lV~~D-~~R~aA~eQ 146 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQ---RKGF---KPCLVCAD-TFRAGAFDQ 146 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCC---CEEEEcCc-ccchhHHHH
Confidence 46999999999999999999998764 4454 88888877 554433333
No 396
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.89 E-value=2.5e-05 Score=75.01 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+||+|||||||+..++...
T Consensus 13 il~~v-s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 13 ALDNV-NLKVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred eeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 45554 4578999999999999999999998887653
No 397
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.89 E-value=5.4e-05 Score=72.91 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=29.0
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 269 l~~i-sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 269 REPI-SFSVRAGEIVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred ccce-eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC
Confidence 3443 3468999999999999999999999888764
No 398
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00015 Score=68.31 Aligned_cols=166 Identities=13% Similarity=0.111 Sum_probs=89.0
Q ss_pred ccCCCCCCccccCC-hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC-CCCHHH
Q 022155 11 LDNPLTTEKCTVGC-PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF-PFPMRR 88 (302)
Q Consensus 11 ~~~~~~~~~i~tG~-~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~-~~~~~r 88 (302)
++.+...-.++.-- +.|+.+ +--+.+|+-+.|.|++||||||++..++.++. ..+| .+.+=..+- ..+.+-
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~-~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G----~i~~~g~~~~~l~~~~ 409 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNF-NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQG----SITLNGVEIASLDEQA 409 (573)
T ss_pred eeeccceeecCCCccchhhcc-ceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCC----eeeECCcChhhCChhh
Confidence 33333333334332 367765 56789999999999999999999988888863 2444 333333231 233332
Q ss_pred HHHHH-HHhCC--CCCCCCCCcEEEEeC-CCHHHHHHHHHH--HHHHHHhcc-------------C-------------C
Q 022155 89 LHQLS-HTFRP--SNDHNPCDYIFVQSV-HSVDQLLDIMPK--IESFIKNSS-------------N-------------S 136 (302)
Q Consensus 89 l~~i~-~~~~~--~~~~~~l~~i~~~~~-~~~~~l~~~l~~--l~~~l~~~~-------------~-------------~ 136 (302)
+++.. .-.+. .......+|+....+ .+.+++.+++.+ +++++.+.+ . -
T Consensus 410 ~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~L 489 (573)
T COG4987 410 LRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARAL 489 (573)
T ss_pred HHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHH
Confidence 33222 11111 111234567766544 356677766654 344443210 0 0
Q ss_pred CCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccC
Q 022155 137 RLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198 (302)
Q Consensus 137 ~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~ 198 (302)
-....++++|+.+.-... ..+| +++..|..-+ .+.|+|+++|--...
T Consensus 490 L~dapl~lLDEPTegLD~--------~TE~-----~vL~ll~~~~--~~kTll~vTHrL~~l 536 (573)
T COG4987 490 LHDAPLWLLDEPTEGLDP--------ITER-----QVLALLFEHA--EGKTLLMVTHRLRGL 536 (573)
T ss_pred HcCCCeEEecCCcccCCh--------hhHH-----HHHHHHHHHh--cCCeEEEEecccccH
Confidence 013467778877753311 1222 4455554433 378888888865433
No 399
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.89 E-value=6.9e-05 Score=80.39 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=31.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+||+|||||||+..++...
T Consensus 400 vL~~i-sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 435 (1466)
T PTZ00265 400 IYKDL-NFTLTEGKTYAFVGESGCGKSTILKLIERLY 435 (1466)
T ss_pred eeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 56654 4578999999999999999999999888875
No 400
>PRK14974 cell division protein FtsY; Provisional
Probab=97.88 E-value=0.00016 Score=65.68 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=36.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH---HHHHHHHH
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM---RRLHQLSH 94 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~---~rl~~i~~ 94 (302)
..++.++|++|+||||++..+|..+. ..|. +|++++++ +++. +++...+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~---~~g~---~V~li~~D-t~R~~a~eqL~~~a~ 192 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLK---KNGF---SVVIAAGD-TFRAGAIEQLEEHAE 192 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH---HcCC---eEEEecCC-cCcHHHHHHHHHHHH
Confidence 57999999999999999999997653 3444 78888766 4444 34444443
No 401
>PTZ00243 ABC transporter; Provisional
Probab=97.88 E-value=5.6e-05 Score=81.63 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=36.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.|+++ +--|++|+.+.|+|++|||||||+..+.+.+. ... +.++||..+
T Consensus 1325 vL~~v-sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~----G~I~IDG~d 1373 (1560)
T PTZ00243 1325 VLRGV-SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCG----GEIRVNGRE 1373 (1560)
T ss_pred eeecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCC----cEEEECCEE
Confidence 45544 44688999999999999999999998887653 223 357888653
No 402
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.88 E-value=5.8e-05 Score=70.52 Aligned_cols=54 Identities=24% Similarity=0.195 Sum_probs=46.6
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.+.+++....+.+.||+..+|.++ -+.+|+.+.|.|++|+||||++..++...
T Consensus 126 ~~~p~~R~~~~~~l~TGi~aID~ll--~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 126 QIHPLQRRAVDTPLDVGVNAINGLL--TIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred CCChHHhcccccccccceeeccceE--eEecceEEEEECCCCCCccHHHHHHhccc
Confidence 4455677777899999999999996 68999999999999999999998777654
No 403
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.87 E-value=0.00019 Score=60.75 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=26.3
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQL 64 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l 64 (302)
....|+++.|.||+|+|||+++..++..+.+
T Consensus 25 ~~~~~~~~~l~G~n~~GKstll~~i~~~~~l 55 (204)
T cd03282 25 TRGSSRFHIITGPNMSGKSTYLKQIALLAIM 55 (204)
T ss_pred eeCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999988776543
No 404
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=5.3e-05 Score=69.53 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=40.3
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCC---HHHHHHHHHH
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFP---MRRLHQLSHT 95 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~---~~rl~~i~~~ 95 (302)
-+..|.++.|+||+|+||||++..|+..+.. ..|. .+|.+|+++. +. .+.+...+..
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~--~~G~--~~V~lit~D~-~R~ga~EqL~~~a~~ 192 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVM--RFGA--SKVALLTTDS-YRIGGHEQLRIFGKI 192 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcCC--CeEEEEeccc-ccccHHHHHHHHHHH
Confidence 3678999999999999999999999987642 2231 2688888663 32 3555555543
No 405
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.86 E-value=0.00017 Score=70.23 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+.+.|+||+|||||||+..++...
T Consensus 338 ~l~~i-~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 373 (547)
T PRK10522 338 SVGPI-NLTIKRGELLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred EEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444 4468999999999999999999998888764
No 406
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=97.86 E-value=8.5e-05 Score=69.76 Aligned_cols=132 Identities=18% Similarity=0.167 Sum_probs=79.8
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+.+++....+.+.||+..+|-++ -+-.|+-+.|+|++|+|||+|+.+++.+.... ... .++|.-.... .
T Consensus 115 ~~~~~~R~~~~~~l~TGiraID~l~--pigkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~--~~~---v~V~~liGER--~ 185 (463)
T PRK09280 115 APSFEELSTKTEILETGIKVIDLLA--PYAKGGKIGLFGGAGVGKTVLIQELINNIAKE--HGG---YSVFAGVGER--T 185 (463)
T ss_pred CCChHHhCCccceeccCCeeecccC--CcccCCEEEeecCCCCChhHHHHHHHHHHHhc--CCC---EEEEEEeccC--c
Confidence 3457777788899999999999987 57799999999999999999999999887421 122 5677654322 2
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEE-EeCCCHH---HHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFV-QSVHSVD---QLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~~---~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
+...++...+.. ...+++..+ ....+.. .+... -..+.+++.+ +.+.--|+++||++.+..
T Consensus 186 rEv~efi~~~~~---~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd---~~G~~VLll~DslTR~A~ 252 (463)
T PRK09280 186 REGNDLYHEMKE---SGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRD---VEGQDVLLFIDNIFRFTQ 252 (463)
T ss_pred HHHHHHHHHHHh---cCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH---hcCCceEEEecchHHHHH
Confidence 233333333211 134444333 3322211 11111 1123334421 023347899999998653
No 407
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.86 E-value=0.00046 Score=60.80 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=59.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSV 116 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~ 116 (302)
+|..+.|+|++|+|||+++..++.... ..+. ++.+++++ .+......++..... . .++-+....+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~---~~~~---~v~~i~~D-~~ri~~~~ql~~~~~------~-~~~~~~~~~~~ 139 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKK---TVGFITTD-HSRIGTVQQLQDYVK------T-IGFEVIAVRDE 139 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH---HcCC---eEEEEecC-CCCHHHHHHHHHHhh------h-cCceEEecCCH
Confidence 568999999999999999999988763 3343 78888877 343433444433211 1 12333444565
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 117 DQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 117 ~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
.++.+.+..+.+ ..+.++|+||......
T Consensus 140 ~~l~~~l~~l~~--------~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 140 AAMTRALTYFKE--------EARVDYILIDTAGKNY 167 (270)
T ss_pred HHHHHHHHHHHh--------cCCCCEEEEECCCCCc
Confidence 555554443321 1356999999987754
No 408
>PRK08116 hypothetical protein; Validated
Probab=97.86 E-value=0.00013 Score=64.42 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=30.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+.-+.|+|++|+|||.|+..++..+. ..+. .|+|++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~---~~~~---~v~~~~~~ 151 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI---EKGV---PVIFVNFP 151 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---HcCC---eEEEEEHH
Confidence 44589999999999999999988864 3344 78999843
No 409
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.86 E-value=7.6e-05 Score=69.52 Aligned_cols=128 Identities=17% Similarity=0.167 Sum_probs=76.6
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+.+++....+.+.||+..+|.++ -+.+|+.+.|.|++|+|||+|+..++.... .. ..++....+..
T Consensus 108 ~~~~~~R~~~~~~~~tGi~~id~l~--~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~---~~vi~~iGer~--- 175 (411)
T TIGR03496 108 PINPLKRAPIDEPLDVGVRAINGLL--TVGRGQRMGIFAGSGVGKSTLLGMMARYTE----AD---VVVVGLIGERG--- 175 (411)
T ss_pred CCCHHhccCcceEeeeeEEeecceE--EEecCcEEEEECCCCCCHHHHHHHHhcCCC----CC---EEEEEEEecCh---
Confidence 4457777778889999999999986 689999999999999999999877765431 11 13333343432
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEE-EeCCCH---HHHHH--HHHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFV-QSVHSV---DQLLD--IMPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~---~~l~~--~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
+.+.++...+.. ...+++..+ ....+. ..... ....+.+++.+ .+.--|+++||++.+..
T Consensus 176 ~ev~e~~~~~~~---~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~----~G~~Vll~~Dsltr~A~ 241 (411)
T TIGR03496 176 REVKEFIEDILG---EEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRD----QGKDVLLLMDSLTRFAM 241 (411)
T ss_pred HHHHHHHHHHhh---CCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----CCCCEEEEEeChHHHHH
Confidence 233333333211 134555433 332221 11111 11233344443 23448999999998753
No 410
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.85 E-value=4.8e-05 Score=64.93 Aligned_cols=137 Identities=13% Similarity=0.140 Sum_probs=67.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHH----------HhCCCCCCCCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSH----------TFRPSNDHNPCD 106 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~----------~~~~~~~~~~l~ 106 (302)
....+.|+||.|+|||+|+.+++.... ..+. .++|++.........+..+.. .+....+.....
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~---~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 92 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELK---EKGY---KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLE 92 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT-----EE---CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTE
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhh---hcCC---cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccch
Confidence 468999999999999999999988752 2221 467777654433333333210 010001111111
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCc
Q 022155 107 YIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGL 186 (302)
Q Consensus 107 ~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~ 186 (302)
. +.. .........+..+.+.+.. ...--+||||.+..+. ..... ...++..+...+..+....++
T Consensus 93 ~--~~~-~~~~~~~~~l~~~~~~l~~----~~~~~iiviDe~~~~~-~~~~~-------~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 93 K--ISK-DLSEDSFSALERLLEKLKK----KGKKVIIVIDEFQYLA-IASEE-------DKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp E--EEC-TS-GG-G--HHHHHHHHHH----CHCCEEEEEETGGGGG-BCTTT-------THHHHHHHHHHHHH----TTE
T ss_pred h--hhh-cchhhHHHHHHHHHHHHHh----cCCcEEEEEecHHHHh-hcccc-------hHHHHHHHHHHHhhccccCCc
Confidence 1 111 2222222233333334433 1222899999999977 11111 112345666666666667788
Q ss_pred EEEEEecc
Q 022155 187 AVLVTNQV 194 (302)
Q Consensus 187 ~viv~n~~ 194 (302)
.+|++...
T Consensus 158 ~~v~~~S~ 165 (234)
T PF01637_consen 158 SIVITGSS 165 (234)
T ss_dssp EEEEEESS
T ss_pred eEEEECCc
Confidence 87777543
No 411
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00013 Score=67.66 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=33.7
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
..++.++.|+||+|+||||++.++|..... ..|. +|.+++++.
T Consensus 220 ~~~~~vi~lvGptGvGKTTtaaKLA~~~~~--~~G~---~V~Lit~Dt 262 (432)
T PRK12724 220 KNQRKVVFFVGPTGSGKTTSIAKLAAKYFL--HMGK---SVSLYTTDN 262 (432)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHH--hcCC---eEEEecccc
Confidence 346789999999999999999999986521 3344 788888773
No 412
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.85 E-value=3.9e-05 Score=73.91 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=30.9
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--+++|+++.|+|++|||||||+..++...
T Consensus 276 ~vl~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 312 (506)
T PRK13549 276 KRVDDV-SFSLRRGEILGIAGLVGAGRTELVQCLFGAY 312 (506)
T ss_pred ccccce-eeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 456654 5578999999999999999999999887653
No 413
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.85 E-value=3.1e-05 Score=72.39 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=46.1
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.+.+++....+.+.||+..+|-++ -+..|+.+.|.|++|+|||+|+..++...
T Consensus 146 ~~~p~~R~~i~e~l~TGiraID~ll--~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~ 199 (455)
T PRK07960 146 PFNPLQRTPIEHVLDTGVRAINALL--TVGRGQRMGLFAGSGVGKSVLLGMMARYT 199 (455)
T ss_pred CcChHHhcccccchhccceeeeecc--cccCCcEEEEECCCCCCccHHHHHHhCCC
Confidence 3456677777889999999999987 58899999999999999999998777653
No 414
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.84 E-value=7.6e-05 Score=70.14 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=45.9
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.+..++....+.+.||+..+|.++ -+.+|+.+.|+|++|+|||+|+.+++...
T Consensus 134 ~~~p~~R~~~~e~l~TGi~~iD~l~--~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 134 PINPLKRAPIREILSTGVRSIDGLL--TVGKGQRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred CCChHHccCccccccceeeeeeecc--ccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456667777788999999999985 68999999999999999999998777654
No 415
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.84 E-value=0.0003 Score=61.83 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=30.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.|++|+|||||+..++...
T Consensus 22 il~~i-s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 22 ILEGV-SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred Eeece-EEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 45554 4568999999999999999999999888764
No 416
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=97.84 E-value=7.1e-05 Score=70.09 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=79.7
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|.+.+++....+.+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+... .... .++|.-.-.. .
T Consensus 114 ~p~~~~R~~~~e~l~TGiraID~l~--pig~GQr~~If~~~G~GKt~L~~~~~~~~~~--~~~~---v~V~alIGER--~ 184 (461)
T TIGR01039 114 APSFEEQSTKVEILETGIKVIDLLA--PYAKGGKIGLFGGAGVGKTVLIQELINNIAK--EHGG---YSVFAGVGER--T 184 (461)
T ss_pred CCChhHcCCcccccccCceeecccC--CcccCCEEEeecCCCCChHHHHHHHHHHHHh--cCCC---eEEEEEecCC--c
Confidence 3457778888999999999999987 5779999999999999999999999988642 1122 5666654222 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCcE-EEEeCCCH---HHHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYI-FVQSVHSV---DQLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i-~~~~~~~~---~~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
+...++...+.. ...+++. .+....+. ..+... -..+.+++.. ..+.--|+++||++.+..
T Consensus 185 rEv~ef~~~~~~---~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd---~~G~~VLll~DslTR~A~ 251 (461)
T TIGR01039 185 REGNDLYHEMKE---SGVIDKTALVYGQMNEPPGARMRVALTGLTMAEYFRD---EQGQDVLLFIDNIFRFTQ 251 (461)
T ss_pred hHHHHHHHHHHh---cCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH---hcCCeeEEEecchhHHHH
Confidence 223333332211 1344443 33333221 112111 1123344432 013347899999998653
No 417
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.84 E-value=0.00027 Score=64.91 Aligned_cols=43 Identities=23% Similarity=0.145 Sum_probs=38.1
Q ss_pred ccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHcc
Q 022155 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQ 63 (302)
Q Consensus 19 ~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~ 63 (302)
..++|...+|-++ -|-.|+=..|+||+|+|||||+.+++....
T Consensus 152 ~~~~~~rvID~l~--PIGkGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 152 PEDLSTRIIDLIA--PIGKGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred Ccccceeeeeeec--ccccCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 4889999999887 467999999999999999999999888764
No 418
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=6.5e-05 Score=71.51 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=68.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
|+.+-.=+.|-||||||||.||..+|.... |-|+.-..+ ++. ..+ .-
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~-----------vPf~~isAp-------eiv------------SGv---SG 265 (802)
T KOG0733|consen 219 GVRPPRGVLLHGPPGCGKTSLANAIAGELG-----------VPFLSISAP-------EIV------------SGV---SG 265 (802)
T ss_pred CCCCCCceeeeCCCCccHHHHHHHHhhhcC-----------CceEeecch-------hhh------------ccc---Cc
Confidence 777766789999999999999999998863 344443221 111 110 11
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHH--cCcEEEEE
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVG--FGLAVLVT 191 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~--~~~~viv~ 191 (302)
.+.+.+.+++.+.. +..+.+|+||.|.++-..- .....++.. +++.+++..+..+..+ .+-.|+++
T Consensus 266 ESEkkiRelF~~A~---------~~aPcivFiDeIDAI~pkR-e~aqreMEr--RiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 266 ESEKKIRELFDQAK---------SNAPCIVFIDEIDAITPKR-EEAQREMER--RIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred ccHHHHHHHHHHHh---------ccCCeEEEeecccccccch-hhHHHHHHH--HHHHHHHHhhhcccccccCCCCeEEE
Confidence 23333444443322 1345999999999976422 111113333 3566777777777654 35677777
Q ss_pred ecc
Q 022155 192 NQV 194 (302)
Q Consensus 192 n~~ 194 (302)
.-.
T Consensus 334 gAT 336 (802)
T KOG0733|consen 334 GAT 336 (802)
T ss_pred ecC
Confidence 654
No 419
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.84 E-value=4.8e-05 Score=73.41 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=28.6
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
|+.+ +--+++|+++.|.||+|||||||+..++..
T Consensus 279 l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl 312 (510)
T PRK15439 279 FRNI-SLEVRAGEILGLAGVVGAGRTELAETLYGL 312 (510)
T ss_pred ccce-eEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4443 446889999999999999999999888765
No 420
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=0.00019 Score=69.63 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=30.6
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--|.+|+++.|+||+|||||||+..++...
T Consensus 15 ~il~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 15 PLFENI-SVKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EeEeCC-EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345554 4578999999999999999999998888753
No 421
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.83 E-value=8.5e-05 Score=80.26 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=36.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.|+.+ +--+++|+.+.|+|++|||||||+..+.+.+. ... +.++||..+
T Consensus 1301 vL~~i-s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~----G~I~IdG~d 1349 (1522)
T TIGR00957 1301 VLRHI-NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAE----GEIIIDGLN 1349 (1522)
T ss_pred cccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCC----CeEEECCEE
Confidence 34443 34689999999999999999999998887653 222 358888653
No 422
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.83 E-value=6e-05 Score=72.55 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=30.4
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 274 ~~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 310 (500)
T TIGR02633 274 KRVDDV-SFSLRRGEILGVAGLVGAGRTELVQALFGAY 310 (500)
T ss_pred cccccc-eeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 345554 4568999999999999999999998887653
No 423
>PRK06526 transposase; Provisional
Probab=97.82 E-value=7.2e-05 Score=65.41 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=31.8
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
+..+.-+.|+||||+|||+++..++..++ ..|. +|+|++.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~---~~g~---~v~f~t~ 134 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRAC---QAGH---RVLFATA 134 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHH---HCCC---chhhhhH
Confidence 45677899999999999999999988775 4454 6777653
No 424
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00016 Score=61.91 Aligned_cols=124 Identities=15% Similarity=0.223 Sum_probs=73.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
||.+-.=+.++||||+|||.|+...|.+. ..-||-.-++ +..++.. . .
T Consensus 185 gidpprgvllygppg~gktml~kava~~t-----------~a~firvvgs---efvqkyl---g-e-------------- 232 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHT-----------TAAFIRVVGS---EFVQKYL---G-E-------------- 232 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhcc-----------chheeeeccH---HHHHHHh---c-c--------------
Confidence 77776679999999999999998877664 2344443332 1221111 0 0
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEec
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQ 193 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~ 193 (302)
......+.+ .+-.+ ..+.+|+||.+.++...-++..-+.-.+-+++|.++++.+.-+-...|+-||+.+.
T Consensus 233 -gprmvrdvf----rlake-----napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatn 302 (408)
T KOG0727|consen 233 -GPRMVRDVF----RLAKE-----NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATN 302 (408)
T ss_pred -CcHHHHHHH----HHHhc-----cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecC
Confidence 111112222 22222 34599999999998765555432222333556667777777777778888887766
Q ss_pred ccccCC
Q 022155 194 VVDLME 199 (302)
Q Consensus 194 ~~~~~~ 199 (302)
-.+..+
T Consensus 303 radtld 308 (408)
T KOG0727|consen 303 RADTLD 308 (408)
T ss_pred cccccC
Confidence 555444
No 425
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00021 Score=66.14 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=55.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCC-cCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPS-SHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHS 115 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~-~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~ 115 (302)
.+.++.++||+|+||||.+..+|..+.+.. ..|. +|.+++++ ++...-..++..... .+ ++-+....+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~---~V~lit~D-t~R~aa~eQL~~~a~------~l-gvpv~~~~~ 241 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSL---NIKIITID-NYRIGAKKQIQTYGD------IM-GIPVKAIES 241 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCC---eEEEEecc-CccHHHHHHHHHHhh------cC-CcceEeeCc
Confidence 357999999999999999999998764321 1233 78888877 444433333221111 11 222333344
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhh
Q 022155 116 VDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAAL 151 (302)
Q Consensus 116 ~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~ 151 (302)
..++...+.. + ...++|+||.....
T Consensus 242 ~~~l~~~L~~---~--------~~~DlVLIDTaGr~ 266 (388)
T PRK12723 242 FKDLKEEITQ---S--------KDFDLVLVDTIGKS 266 (388)
T ss_pred HHHHHHHHHH---h--------CCCCEEEEcCCCCC
Confidence 4444433322 1 24699999998764
No 426
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.81 E-value=0.0004 Score=60.50 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=30.2
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+|-++ -+..|+.+.|+||+|+|||||+..++...
T Consensus 5 ~~id~~~--~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 5 RVVDLFA--PIGKGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred hheeeec--ccCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3566665 46799999999999999999999888765
No 427
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.81 E-value=0.00023 Score=65.07 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=34.4
Q ss_pred ccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 21 TVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 21 ~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++...+|-++. +-.|+=..|+||+|+|||+++..++...
T Consensus 118 ~~~~RvID~l~P--iGkGQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 118 DLSMRVVDLVAP--IGKGQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred chhHhhhhheee--cCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 677788888763 5588999999999999999999998876
No 428
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00022 Score=65.56 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=66.8
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH-HHHHHHHHHhCCCCCCCCC
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM-RRLHQLSHTFRPSNDHNPC 105 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~-~rl~~i~~~~~~~~~~~~l 105 (302)
|..++.|+.|.. +.|+|++|+|||+.+..++....-+ ..+. .++||++...-.+ .-+.++...+.
T Consensus 33 l~~~~~~~~p~n--~~iyG~~GTGKT~~~~~v~~~l~~~-~~~~---~~~yINc~~~~t~~~i~~~i~~~~~-------- 98 (366)
T COG1474 33 LAPALRGERPSN--IIIYGPTGTGKTATVKFVMEELEES-SANV---EVVYINCLELRTPYQVLSKILNKLG-------- 98 (366)
T ss_pred HHHHhcCCCCcc--EEEECCCCCCHhHHHHHHHHHHHhh-hccC---ceEEEeeeeCCCHHHHHHHHHHHcC--------
Confidence 555667887776 8899999999999999998887422 1111 3899999864443 44566665543
Q ss_pred CcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhh
Q 022155 106 DYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRS 154 (302)
Q Consensus 106 ~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~ 154 (302)
++-.... . ..+.+..+.+.+.. ....-+||+|.+..+...
T Consensus 99 -~~p~~g~-~---~~~~~~~l~~~~~~----~~~~~IvvLDEid~L~~~ 138 (366)
T COG1474 99 -KVPLTGD-S---SLEILKRLYDNLSK----KGKTVIVILDEVDALVDK 138 (366)
T ss_pred -CCCCCCC-c---hHHHHHHHHHHHHh----cCCeEEEEEcchhhhccc
Confidence 1111111 2 22333444444443 356789999999998743
No 429
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=97.81 E-value=0.00015 Score=69.36 Aligned_cols=130 Identities=11% Similarity=0.118 Sum_probs=81.1
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|-+.+++.....++.||...+|.++ -+-.|+-..|.|++|+|||+++.+++... ..+ -++|+-+-+. -
T Consensus 197 p~p~~~R~~~~~PL~TG~RvID~lf--Pi~kGqr~~I~gg~G~GKT~l~~~lak~s----~aD----viVyvg~GER--G 264 (591)
T TIGR01042 197 PRPVTEKLPANTPLLTGQRVLDALF--PCVQGGTTAIPGAFGCGKTVISQSLSKYS----NSD----AIVYVGCGER--G 264 (591)
T ss_pred CCChhhccCCCCccccchhhhhhcc--chhcCCeEEEEcCCCcCHHHHHHHHHhcc----CcC----EEEEEEEeec--h
Confidence 5567888888999999999999998 57799999999999999999999987654 222 5788876532 1
Q ss_pred HHHHHHHHHhCCC------CCCCCCCcEEE-EeCCCHH---HHHHHH--HHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 87 RRLHQLSHTFRPS------NDHNPCDYIFV-QSVHSVD---QLLDIM--PKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 87 ~rl~~i~~~~~~~------~~~~~l~~i~~-~~~~~~~---~l~~~l--~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
..+.++...|... .....+++..+ ....+.. ...... ..+.+++.+ .+.--++++||++...
T Consensus 265 ~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~ytg~tiAEYfRD----~G~~Vll~~DS~tR~A 338 (591)
T TIGR01042 265 NEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRD----MGYNVSMMADSTSRWA 338 (591)
T ss_pred HHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh----cCCCEEEEecChHHHH
Confidence 2233444443111 11134455333 3322211 111111 134455544 2333788999999854
No 430
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.81 E-value=0.00033 Score=59.93 Aligned_cols=39 Identities=31% Similarity=0.343 Sum_probs=28.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
..+-|+|++|+|||.|+..++..+.- ...+ .+|+|++.+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~---~~v~y~~~~ 73 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQK-QHPG---KRVVYLSAE 73 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-HCTT---S-EEEEEHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh-cccc---ccceeecHH
Confidence 45789999999999999888876531 1123 389999966
No 431
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.81 E-value=0.00014 Score=74.78 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=40.0
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHH
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQ 91 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~ 91 (302)
-+|+|+.+.|+|++||||||+..-+.+.+. | .. .-++||.++ .++.++++.
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~Rfyd-P-~~-----G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYD-P-TS-----GEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcC-C-CC-----ceEEEcCccchhcchHHHHh
Confidence 689999999999999999999987777763 2 33 369999885 455566654
No 432
>PRK06820 type III secretion system ATPase; Validated
Probab=97.81 E-value=0.00013 Score=68.23 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=45.9
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.+.+.+....+.+.||+..+|.++ -+.+|+.+.|+|++|+|||+|+..++...
T Consensus 134 ~p~p~~R~~~~~~l~TGi~aID~l~--~i~~Gqri~I~G~sG~GKStLl~~I~~~~ 187 (440)
T PRK06820 134 PPSPLTRQPIEQMLTTGIRAIDGIL--SCGEGQRIGIFAAAGVGKSTLLGMLCADS 187 (440)
T ss_pred CCChhhcCCchhhccCCCceecceE--EecCCCEEEEECCCCCChHHHHHHHhccC
Confidence 3346667777899999999999996 68899999999999999999998776543
No 433
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.80 E-value=0.00011 Score=79.24 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=36.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.|+.+ +--|++|+.+.|+|++|||||||+..+++.. + .. +.++||...
T Consensus 1234 vL~~i-s~~I~~GekvaIvGrSGsGKSTLl~lL~rl~--~-~~-----G~I~IdG~d 1281 (1490)
T TIGR01271 1234 VLQDL-SFSVEGGQRVGLLGRTGSGKSTLLSALLRLL--S-TE-----GEIQIDGVS 1281 (1490)
T ss_pred eeecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhhhc--C-CC-----cEEEECCEE
Confidence 34443 3468999999999999999999999998875 2 22 357888653
No 434
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.80 E-value=6.6e-05 Score=72.27 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.7
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 268 l~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~ 302 (501)
T PRK10762 268 VNDV-SFTLRKGEILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred cccc-eEEEcCCcEEEEecCCCCCHHHHHHHHhCCC
Confidence 4443 3468899999999999999999998887653
No 435
>PRK06893 DNA replication initiation factor; Validated
Probab=97.80 E-value=0.00017 Score=62.21 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
...+.|+||||+|||+|+..++..+. ..+. ++.|++.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~---~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYL---LNQR---TAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCC---CeEEeeHH
Confidence 34689999999999999999988764 3343 78898864
No 436
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.80 E-value=0.00019 Score=68.97 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=62.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHH
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQ 118 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~ 118 (302)
.-+.|+||||+|||+++..+|..... ..++++... +.... . -.....
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~---------~~~~i~~~~------~~~~~---~---------------g~~~~~ 135 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGV---------PFFSISGSD------FVEMF---V---------------GVGASR 135 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC---------CeeeccHHH------HHHHH---h---------------cccHHH
Confidence 34899999999999999999876421 344444321 11110 0 001122
Q ss_pred HHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 119 LLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 119 l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
+.+++.... . ..+.+|+||++..+....-.+..+....+.+.+..++..+..+....++.||.+++-.+
T Consensus 136 l~~~f~~a~----~-----~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 136 VRDLFEQAK----K-----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHHHHHH----h-----cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 222332221 1 23489999999998743211100111233344566666666655556677776655433
No 437
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=97.79 E-value=0.00012 Score=68.91 Aligned_cols=132 Identities=10% Similarity=0.130 Sum_probs=80.3
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR 87 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~ 87 (302)
.+.+++....+.+.||+..+|-++ -+-+|+=+.|+|.+|+|||+|+.+++.+.... .+..+..|+|.-.-..- .
T Consensus 113 ~~~~~R~~~~~~l~TGi~~ID~l~--pig~GQR~gIfgg~G~GKs~L~~~ia~~~~ad--~~~~~~v~V~~~iGERg--r 186 (458)
T TIGR01041 113 INPYAREYPEEFIQTGISAIDGMN--TLVRGQKLPIFSGSGLPHNELAAQIARQATVR--GEESEFAVVFAAMGITY--E 186 (458)
T ss_pred CChhhcCCCCCcCCCCeEEEEccC--ccccCCEEEeeCCCCCCHHHHHHHHHHhhccc--CCCCceEEEEEEccccc--h
Confidence 346677788999999999999987 57799999999999999999999998876311 11112257777654321 2
Q ss_pred HHHHHHHHhCCCCCCCCCCcEEE-EeCCCHHHHHHHH-----HHHHHHHH-hccCCCCCeeEEEEechhhhh
Q 022155 88 RLHQLSHTFRPSNDHNPCDYIFV-QSVHSVDQLLDIM-----PKIESFIK-NSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 88 rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~~~l~~~l-----~~l~~~l~-~~~~~~~~~~lvVIDsi~~~~ 152 (302)
...++.+.+. ....+++..+ ....+..-+...+ ..+.+++. + ...--|+++||++.+.
T Consensus 187 Ev~efi~~~~---~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~d----~G~~VLli~DslTR~A 251 (458)
T TIGR01041 187 EANFFMKDFE---ETGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAFE----KDMHVLVILTDMTNYC 251 (458)
T ss_pred HHHHHHHHHH---hcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc----cCCcEEEEEcChhHHH
Confidence 2223333221 1134555433 3322221111111 12444554 2 2444789999999865
No 438
>PLN03211 ABC transporter G-25; Provisional
Probab=97.79 E-value=7.3e-05 Score=74.13 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=30.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ ++-+++|+++.|.||+|+|||||+..++...
T Consensus 83 iL~~v-s~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~ 118 (659)
T PLN03211 83 ILNGV-TGMASPGEILAVLGPSGSGKSTLLNALAGRI 118 (659)
T ss_pred eeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 5679999999999999999999998887754
No 439
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.00018 Score=62.99 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=34.4
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
++.+.-+.|+|+||+|||.|+..++..+. ..|- .|+|+++.
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~---sv~f~~~~ 142 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNELL---KAGI---SVLFITAP 142 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHH---HcCC---eEEEEEHH
Confidence 45788999999999999999999988875 4454 89999855
No 440
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.79 E-value=0.00015 Score=69.53 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=28.7
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
|+.+ +--+++|+++.|.||+|||||||+..++..
T Consensus 276 l~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 276 LHNL-SWQVNPGEHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred Eeec-eEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4443 456889999999999999999999988874
No 441
>PRK08727 hypothetical protein; Validated
Probab=97.79 E-value=0.00026 Score=61.18 Aligned_cols=38 Identities=34% Similarity=0.478 Sum_probs=30.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
...+.|+|++|+|||+|+..++..+. ..|. +++|++.+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~---~~~y~~~~ 78 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAE---QAGR---SSAYLPLQ 78 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCC---cEEEEeHH
Confidence 45699999999999999998887764 3443 78998844
No 442
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.79 E-value=2e-05 Score=75.85 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=30.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 16 il~~i-sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 16 ALDGI-DLEVRPGECVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred eecce-EEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4578999999999999999999998887653
No 443
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=97.78 E-value=0.0001 Score=69.48 Aligned_cols=132 Identities=11% Similarity=0.129 Sum_probs=81.1
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR 87 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~ 87 (302)
.+.+++....+.+.||+..+|-++ -+-+|+-+.|+|.+|+|||+|+.+++.+... ..+..+..|+|.-.-..- .
T Consensus 115 p~~l~R~~i~epl~TGi~~ID~l~--pig~GQR~gIfgg~G~GKs~L~~~ia~~~~~--d~~~~~~v~V~~~iGeRg--r 188 (460)
T PRK04196 115 INPVAREYPEEFIQTGISAIDGLN--TLVRGQKLPIFSGSGLPHNELAAQIARQAKV--LGEEENFAVVFAAMGITF--E 188 (460)
T ss_pred CChhhcCCCCccccCCeEEEeccC--cccCCCEEEeeCCCCCCccHHHHHHHHhhhh--ccCCCceEEEEEEecccc--H
Confidence 456778888999999999999987 5779999999999999999999998887631 111112257787754322 2
Q ss_pred HHHHHHHHhCCCCCCCCCCcEEEE-eCCCHHHHHHHH-----HHHHHHHH-hccCCCCCeeEEEEechhhhh
Q 022155 88 RLHQLSHTFRPSNDHNPCDYIFVQ-SVHSVDQLLDIM-----PKIESFIK-NSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 88 rl~~i~~~~~~~~~~~~l~~i~~~-~~~~~~~l~~~l-----~~l~~~l~-~~~~~~~~~~lvVIDsi~~~~ 152 (302)
...++.+.+.. ...+++..+. ...+..-....+ ..+.+++. + .+.--|+++||++.+.
T Consensus 189 Ev~e~~~~~~~---~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfr~d----~G~~VLli~DslTR~A 253 (460)
T PRK04196 189 EANFFMEDFEE---TGALERSVVFLNLADDPAIERILTPRMALTAAEYLAFE----KGMHVLVILTDMTNYC 253 (460)
T ss_pred HHHHHHHHHHh---cCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHh----cCCcEEEEEcChHHHH
Confidence 22233332211 1345554443 332211111111 13444554 2 2344889999999865
No 444
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.78 E-value=0.00033 Score=65.87 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH---HHHHHHHH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM---RRLHQLSH 94 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~---~rl~~i~~ 94 (302)
...++.++|++|+||||++..+|..+. ..|. +|.+++++ .+.+ +.+..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~---~~g~---kV~lV~~D-~~R~aa~eQL~~la~ 147 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK---KKGL---KVGLVAAD-TYRPAAYDQLKQLAE 147 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---HcCC---eEEEecCC-CCCHHHHHHHHHHHH
Confidence 357999999999999999999998764 4454 88888877 3443 33444443
No 445
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.78 E-value=0.00032 Score=61.81 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=26.8
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.++..| ....+.|+||+|+|||||+..++...
T Consensus 100 ~~l~~l~~~~--~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 100 KLLPYLVRNN--RVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred HHHHHHHhCC--CeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 3456665321 12578999999999999999998775
No 446
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=97.78 E-value=0.00029 Score=66.57 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=54.3
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
|.+.++.....+.+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+..++.+... .... .++|.-.-
T Consensus 132 ~p~~~~R~~i~e~L~TGIraID~l~--pigkGQR~gIfgg~GvGKs~L~~~~~~~~~~--~~~d---v~V~~lIG 199 (494)
T CHL00060 132 APAFIQLDTKLSIFETGIKVVDLLA--PYRRGGKIGLFGGAGVGKTVLIMELINNIAK--AHGG---VSVFGGVG 199 (494)
T ss_pred CcCchhcccccceeecCceeeeccC--CcccCCEEeeecCCCCChhHHHHHHHHHHHH--hcCC---eEEEEEec
Confidence 4557777778899999999999987 5779999999999999999999999988421 1122 57776543
No 447
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.77 E-value=0.0004 Score=58.38 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.3
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
-+.+| ++.|+||+|+|||||+..++..
T Consensus 19 ~~~~g-~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 19 PFPPG-LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 36678 9999999999999999888654
No 448
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.77 E-value=0.00012 Score=68.03 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+.+-.-+.|+||||+|||++|..++...
T Consensus 161 g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 56666679999999999999999998764
No 449
>PF05729 NACHT: NACHT domain
Probab=97.77 E-value=0.00041 Score=55.85 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHcc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQ 63 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~ 63 (302)
.++.|.|++|+|||+++..++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 3688999999999999999998875
No 450
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.76 E-value=0.00019 Score=65.28 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=27.2
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+++-.++.|+||||+|||.+|..+|..+
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 478888999999999999999999998875
No 451
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.76 E-value=0.00023 Score=69.44 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=31.3
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-..|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 20 ~~il~~v-s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 20 KQILKDI-SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred CeeeeCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456655 4578999999999999999999998888764
No 452
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.76 E-value=0.00023 Score=70.83 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=30.3
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--+++|+++.|+||+|||||||+..++...
T Consensus 466 ~il~~i-sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~ 502 (659)
T TIGR00954 466 VLIESL-SFEVPSGNHLLICGPNGCGKSSLFRILGELW 502 (659)
T ss_pred eeeecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345554 4468999999999999999999998887754
No 453
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.76 E-value=0.00058 Score=57.33 Aligned_cols=70 Identities=19% Similarity=0.374 Sum_probs=48.0
Q ss_pred ccCChhhHhhhCC---CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCH-HHHHHHHH
Q 022155 21 TVGCPIIDRCLGG---GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPM-RRLHQLSH 94 (302)
Q Consensus 21 ~tG~~~LD~~L~G---Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~-~rl~~i~~ 94 (302)
-.|.+.=+.+|.| -|+.|+++-|.|.+|+|||||+..++.... + . + .-++||..+ ..+. .|...++.
T Consensus 12 ~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-~-t-~----G~I~Idg~dVtk~~~~~RA~~lar 84 (263)
T COG1101 12 FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-P-T-S----GQILIDGVDVTKKSVAKRANLLAR 84 (263)
T ss_pred cCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-c-C-C----ceEEECceecccCCHHHHhhHHHH
Confidence 3344444455543 689999999999999999999999988763 2 2 3 358888764 2333 55555555
Q ss_pred HhC
Q 022155 95 TFR 97 (302)
Q Consensus 95 ~~~ 97 (302)
.|+
T Consensus 85 VfQ 87 (263)
T COG1101 85 VFQ 87 (263)
T ss_pred Hhc
Confidence 554
No 454
>PTZ00185 ATPase alpha subunit; Provisional
Probab=97.76 E-value=0.00015 Score=68.58 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=79.8
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHcc-CCCcCC-CCCCeEEEEeCCCCC
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQ-LPSSHG-GLSASSLYLHTEFPF 84 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~-l~~~~g-g~~~~vlyid~e~~~ 84 (302)
|.++.++....+.+.||+..+|-++ -|-+|+=..|.|++|+|||++|+....+.. .....+ +....|+|.-.-..-
T Consensus 160 ap~~~~R~~v~epL~TGIkaID~Li--PIGRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~ 237 (574)
T PTZ00185 160 APNIVSRSPVNYNLLTGFKAVDTMI--PIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRC 237 (574)
T ss_pred CcChhhcCCCCCcCcCCceeeeccc--cccCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccch
Confidence 3457788888999999999999987 577999999999999999999865544432 100000 111378888754332
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCcEEE-EeCCCHHHHHHHH-----HHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 85 PMRRLHQLSHTFRPSNDHNPCDYIFV-QSVHSVDQLLDIM-----PKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 85 ~~~rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~~~l~~~l-----~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
+...++...+... ..+++..+ ....+..-....+ ..+.+++.+ ...--|||+|+++.+..
T Consensus 238 --rEV~ei~~~L~e~---GaL~~TvVV~AtAdep~~~r~~Apy~a~tiAEYFrd----~GkdVLiv~DDLTr~A~ 303 (574)
T PTZ00185 238 --SNVARIHRLLRSY---GALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMN----RGRHCLCVYDDLSKQAV 303 (574)
T ss_pred --HHHHHHHHHHHhc---CCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCCCEEEEEcCchHHHH
Confidence 2233333332211 23455433 3222211111111 123344433 34448999999998653
No 455
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.75 E-value=2.5e-05 Score=67.78 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=29.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
..+.|+|++|+|||+|+..++..+. ..|. .|+|++.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~---~~g~---~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL---LRGK---SVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---hcCC---eEEEEEH
Confidence 4689999999999999999998874 3454 8999974
No 456
>PRK05642 DNA replication initiation factor; Validated
Probab=97.75 E-value=0.00026 Score=61.20 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=29.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
..+.|+|++|+|||.|+..++..+. ..|. +|+|++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~---~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE---QRGE---PAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH---hCCC---cEEEeeHH
Confidence 5678999999999999988876653 3343 89999965
No 457
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.75 E-value=9e-05 Score=71.20 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=35.9
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCC----CCCCeEEEEeCCC
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHG----GLSASSLYLHTEF 82 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~g----g~~~~vlyid~e~ 82 (302)
.-.+.+|+-+.|+||+|+|||||+..++.... | ..| +...++-|++-+.
T Consensus 342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-~-~~G~v~~g~~v~igyf~Q~~ 394 (530)
T COG0488 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-P-LSGTVKVGETVKIGYFDQHR 394 (530)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-c-CCceEEeCCceEEEEEEehh
Confidence 45789999999999999999999988876642 2 223 1123567887554
No 458
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=97.75 E-value=0.00046 Score=66.29 Aligned_cols=130 Identities=14% Similarity=0.120 Sum_probs=81.9
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|-+.+++....+.+.||+..+|.++ -+-+|+-..|.|++|+|||++..+++... ..+ -|+|+-+-.. -
T Consensus 193 p~p~~~R~~~~~pL~TGiRvID~l~--Pi~kGqr~~I~gg~G~GKT~l~~~lak~~----~ad----ivVyvg~GER--G 260 (578)
T TIGR01043 193 PRPYKEKLPPEVPLITGQRILDTFF--PIAKGGTAAIPGPFGSGKTVTQHQLAKWS----DAD----IVVYIGCGER--G 260 (578)
T ss_pred CCCchhcCCCCcchhccchhhhccc--cccCCCEEEEecCCCCCHHHHHHHHHhcC----CCC----EEEEEEeccC--h
Confidence 4457788888999999999999998 57799999999999999999999888764 222 6889876432 2
Q ss_pred HHHHHHHHHhCCC----CCCCCCCcEE-EEeCCCHH---HHHHHH--HHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 87 RRLHQLSHTFRPS----NDHNPCDYIF-VQSVHSVD---QLLDIM--PKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 87 ~rl~~i~~~~~~~----~~~~~l~~i~-~~~~~~~~---~l~~~l--~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
..+.++...+... .-...+++.. +....+.. ...... ..+.+++.+ .+.--+++.||++...
T Consensus 261 ~E~~e~le~f~~l~dp~~g~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiAEYfRD----~G~~Vllm~DS~sR~A 332 (578)
T TIGR01043 261 NEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRD----MGYDVALMADSTSRWA 332 (578)
T ss_pred HHHHHHHHHhHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----CCCCEEEEecChhHHH
Confidence 2334444443211 1123445543 33332211 111111 134455554 2333788999998864
No 459
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.75 E-value=3e-05 Score=82.85 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=30.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ .+-+++|+++.|.||+|+|||||+..++...
T Consensus 778 iL~~v-s~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~ 813 (1394)
T TIGR00956 778 ILNNV-DGWVKPGTLTALMGASGAGKTTLLNVLAERV 813 (1394)
T ss_pred eeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45555 5679999999999999999999998887753
No 460
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=97.75 E-value=0.00051 Score=66.07 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=79.1
Q ss_pred cccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH
Q 022155 10 LLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL 89 (302)
Q Consensus 10 l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl 89 (302)
..++....+.+.||+..+|.++ -+.+|+-..|.|++|+|||+++.+++..+. .+ -++|+-+-..- ...
T Consensus 201 ~~~R~~~~~pL~TGirvID~l~--Pi~kGq~~~Ipg~~G~GKTvl~~~iak~a~----ad----ivVyvg~GERg--~E~ 268 (586)
T PRK04192 201 YKEKLPPVEPLITGQRVIDTFF--PVAKGGTAAIPGPFGSGKTVTQHQLAKWAD----AD----IVIYVGCGERG--NEM 268 (586)
T ss_pred ccccCCCCCccccCchhhhccc--ccccCCeEEEecCCCCCHHHHHHHHHhcCC----CC----EEEEEEcCcCh--HHH
Confidence 3677777999999999999987 578999999999999999999999988752 22 68888865432 223
Q ss_pred HHHHHHhCC----CCCCCCCCcEEE-EeCCCHH---HHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 90 HQLSHTFRP----SNDHNPCDYIFV-QSVHSVD---QLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 90 ~~i~~~~~~----~~~~~~l~~i~~-~~~~~~~---~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
.++...|.. ..-...+++..+ ....+.. ..... -..+.+++.+ .+.--+++.||++...
T Consensus 269 ~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~s~ytgiTiAEYfRd----~G~~Vllm~DStSR~A 337 (586)
T PRK04192 269 TEVLEEFPELIDPKTGRPLMERTVLIANTSNMPVAAREASIYTGITIAEYYRD----MGYDVLLMADSTSRWA 337 (586)
T ss_pred HHHHHHHHhhcccccccccceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----CCCCEEEEecChHHHH
Confidence 333333221 111234555433 3322211 11111 1134455544 2333677899998864
No 461
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=97.74 E-value=0.00027 Score=60.10 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=68.0
Q ss_pred cCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCC
Q 022155 22 VGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSND 101 (302)
Q Consensus 22 tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~ 101 (302)
||+..+|-++ -+-+|+-+.|.|++|+|||+|+.+++.+.. .. .++|+-.... .+.+.++...+..
T Consensus 1 TGir~ID~l~--Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d----~~V~~~iGer--~~Ev~~~~~~~~~--- 65 (215)
T PF00006_consen 1 TGIRAIDLLF--PIGRGQRIGIFGGAGVGKTVLLQEIANNQD----AD----VVVYALIGER--GREVTEFIEELKG--- 65 (215)
T ss_dssp -SHHHHHHHS--CEETTSEEEEEESTTSSHHHHHHHHHHHCT----TT----EEEEEEESEC--HHHHHHHHHHHHH---
T ss_pred CCCceecccc--ccccCCEEEEEcCcccccchhhHHHHhccc----cc----ceeeeecccc--chhHHHHHHHHhh---
Confidence 7999999886 577999999999999999999999999873 22 4577664432 3444444443311
Q ss_pred CCCCCcEE-EE-eCCCHH--HHHH--HHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 102 HNPCDYIF-VQ-SVHSVD--QLLD--IMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 102 ~~~l~~i~-~~-~~~~~~--~l~~--~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
...+++.. +. ..+... .... .-..+.+++.+ ..+--++++|+++.+.
T Consensus 66 ~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd----~G~dVlli~Dsltr~a 118 (215)
T PF00006_consen 66 EGALERTVVVAATSDEPPAARYRAPYTALTIAEYFRD----QGKDVLLIIDSLTRWA 118 (215)
T ss_dssp TTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHHHHH----TTSEEEEEEETHHHHH
T ss_pred cccccccccccccchhhHHHHhhhhccchhhhHHHhh----cCCceeehhhhhHHHH
Confidence 13455533 33 333222 1111 11123334443 3455889999999865
No 462
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.74 E-value=0.0006 Score=63.51 Aligned_cols=95 Identities=16% Similarity=0.248 Sum_probs=56.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH-HHHHHHHHHhCCCCCCCCCCcEEEEeCCCHH
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM-RRLHQLSHTFRPSNDHNPCDYIFVQSVHSVD 117 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~-~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~ 117 (302)
..+.|+||||+|||+++..++.... ..+ ....++|+++...... .-+.++...+...... ....+.+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~---~~~-~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~--------~~~~~~~ 123 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELE---EIA-VKVVYVYINCQIDRTRYAIFSEIARQLFGHPPP--------SSGLSFD 123 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH---Hhc-CCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCC--------CCCCCHH
Confidence 4578999999999999999988753 111 1136899987654333 3345555544321000 0112233
Q ss_pred HHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 118 QLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 118 ~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
+ ++..+.+.+.. ....-+||||.+..+.
T Consensus 124 ~---~~~~~~~~l~~----~~~~~viviDE~d~l~ 151 (394)
T PRK00411 124 E---LFDKIAEYLDE----RDRVLIVALDDINYLF 151 (394)
T ss_pred H---HHHHHHHHHHh----cCCEEEEEECCHhHhh
Confidence 3 33444445543 2345789999999876
No 463
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.74 E-value=0.00033 Score=67.28 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=29.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+|++|||||||+..++...
T Consensus 263 ~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 263 SIRDV-SFDLHKGEILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred cccee-eEEEeCCcEEEEecCCCCCHHHHHHHHcCCC
Confidence 34443 3468999999999999999999998887653
No 464
>CHL00176 ftsH cell division protein; Validated
Probab=97.73 E-value=0.0001 Score=72.50 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=62.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHH
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQ 118 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~ 118 (302)
.-+.|+||||+|||+++..+|..... ..+++++.. +..... . .....
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~~---------p~i~is~s~------f~~~~~------------g------~~~~~ 263 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAEV---------PFFSISGSE------FVEMFV------------G------VGAAR 263 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC---------CeeeccHHH------HHHHhh------------h------hhHHH
Confidence 34899999999999999999876421 455555331 111100 0 01112
Q ss_pred HHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecc
Q 022155 119 LLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194 (302)
Q Consensus 119 l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~ 194 (302)
+.+++.... ...+.+|+||.+..+....-.+..+....+.+.+..++..+..+....++.||.+.+-
T Consensus 264 vr~lF~~A~---------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~ 330 (638)
T CHL00176 264 VRDLFKKAK---------ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNR 330 (638)
T ss_pred HHHHHHHHh---------cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCc
Confidence 222222211 1344899999999976432111111123444556666666655555567777766654
No 465
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.73 E-value=5.5e-05 Score=69.05 Aligned_cols=140 Identities=18% Similarity=0.271 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCC----CCeEEE---------EeCCC--CCCH-HHHHHHHHHh
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGL----SASSLY---------LHTEF--PFPM-RRLHQLSHTF 96 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~----~~~vly---------id~e~--~~~~-~rl~~i~~~~ 96 (302)
--+.+|+++.|+|+||+||||++..++...- ..++. ....+- +-.+. .|.. .-++++....
T Consensus 404 L~ikpGdvvaVvGqSGaGKttllRmi~G~~~---~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~t 480 (593)
T COG2401 404 LEIKPGDVVAVVGQSGAGKTTLLRMILGAQK---GRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKT 480 (593)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHHHhh---cccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhcc
Confidence 3578999999999999999999998888753 11110 001111 22211 1221 1122222221
Q ss_pred CCCCCC-------CCCCcEEEEeCCCHHHH---HHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHH
Q 022155 97 RPSNDH-------NPCDYIFVQSVHSVDQL---LDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKR 166 (302)
Q Consensus 97 ~~~~~~-------~~l~~i~~~~~~~~~~l---~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r 166 (302)
+..+.. -..|.+++.+..+ ++ ..--.+|.+++.+ ..+++++|.+.+++. .+.
T Consensus 481 GD~~~AveILnraGlsDAvlyRr~f~--ELStGQKeR~KLAkllae------rpn~~~iDEF~AhLD--------~~T-- 542 (593)
T COG2401 481 GDLNAAVEILNRAGLSDAVLYRRKFS--ELSTGQKERAKLAKLLAE------RPNVLLIDEFAAHLD--------ELT-- 542 (593)
T ss_pred CchhHHHHHHHhhccchhhhhhccHh--hcCcchHHHHHHHHHHhc------CCCcEEhhhhhhhcC--------HHH--
Confidence 111100 0112222221111 11 0011245556654 459999999999762 112
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 167 SFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 167 ~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
...+++.|.++|++.++|++++.|--+
T Consensus 543 ---A~rVArkiselaRe~giTlivvThrpE 569 (593)
T COG2401 543 ---AVRVARKISELAREAGITLIVVTHRPE 569 (593)
T ss_pred ---HHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 347889999999999999999988543
No 466
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.73 E-value=0.00042 Score=56.31 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHcc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQ 63 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~ 63 (302)
.+.++.|+||+|+|||+++..++..+.
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999877764
No 467
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.73 E-value=0.0012 Score=52.45 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=27.4
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHcc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSAQ 63 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~ 63 (302)
+-.|.+|+|+-|.||+|||||||.-.++...+
T Consensus 22 n~Tia~GeivtlMGPSGcGKSTLls~~~G~La 53 (213)
T COG4136 22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALA 53 (213)
T ss_pred eEEecCCcEEEEECCCCccHHHHHHHHHhhcc
Confidence 34688999999999999999999987777653
No 468
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.72 E-value=0.00041 Score=65.03 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=33.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
-.++.++|++|+||||++..+|..+.. ..|. +|++++++ .+.+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~--~~g~---kV~lV~~D-~~R~ 141 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKK--KQGK---KVLLVACD-LYRP 141 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH--hCCC---eEEEEecc-ccch
Confidence 369999999999999999999988521 2344 89999988 4444
No 469
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.71 E-value=0.00027 Score=65.26 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+.+..-+.|+||||+|||+++..++...
T Consensus 152 g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 152 GIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 56666669999999999999999998764
No 470
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=7.1e-05 Score=73.58 Aligned_cols=118 Identities=20% Similarity=0.244 Sum_probs=71.2
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEE
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQ 111 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~ 111 (302)
+--+|+| +.|+||||+|||.||..+|..+ .|=|++..++. +.++... .
T Consensus 340 GAKiPkG--vLL~GPPGTGKTLLAKAiAGEA-----------gVPF~svSGSE----FvE~~~g---------------~ 387 (774)
T KOG0731|consen 340 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA-----------GVPFFSVSGSE----FVEMFVG---------------V 387 (774)
T ss_pred CCcCcCc--eEEECCCCCcHHHHHHHHhccc-----------CCceeeechHH----HHHHhcc---------------c
Confidence 4568888 8899999999999999998876 46677766531 1111110 0
Q ss_pred eCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccC-CChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEE
Q 022155 112 SVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFD-NTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLV 190 (302)
Q Consensus 112 ~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~-~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv 190 (302)
......++ +. .-. ...+.+|.||+|.++-+..-. ...+.-++|.+.+.+++-.+..+....++.|+.
T Consensus 388 ~asrvr~l---f~----~ar-----~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a 455 (774)
T KOG0731|consen 388 GASRVRDL---FP----LAR-----KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLA 455 (774)
T ss_pred chHHHHHH---HH----Hhh-----ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEe
Confidence 11111122 22 111 134599999999997643311 011122567777888888888887665555555
Q ss_pred Eec
Q 022155 191 TNQ 193 (302)
Q Consensus 191 ~n~ 193 (302)
.+.
T Consensus 456 ~tn 458 (774)
T KOG0731|consen 456 ATN 458 (774)
T ss_pred ccC
Confidence 544
No 471
>PLN03140 ABC transporter G family member; Provisional
Probab=97.71 E-value=0.00013 Score=78.27 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=33.6
Q ss_pred CChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 23 GCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 23 G~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+...|+++ +|-+++|+++.|.||||||||||+..++...
T Consensus 177 ~~~IL~~v-s~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l 215 (1470)
T PLN03140 177 KLTILKDA-SGIIKPSRMTLLLGPPSSGKTTLLLALAGKL 215 (1470)
T ss_pred cceeccCC-eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45567776 6889999999999999999999999888764
No 472
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.00054 Score=58.58 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=29.6
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--+.+|+-..|.||+|||||||+..+++..
T Consensus 45 ~iL~~i-sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 45 KILGDL-SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred eecccc-ceeecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 344544 5578999999999999999999997776653
No 473
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.70 E-value=0.00011 Score=80.28 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=37.1
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
..++.+ .-.+++|+++.|.||+|+||||++..++... ++..| -++++..
T Consensus 1953 ~aL~~I-Sf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll--~ptsG-----~I~i~G~ 2001 (2272)
T TIGR01257 1953 PAVDRL-CVGVRPGECFGLLGVNGAGKTTTFKMLTGDT--TVTSG-----DATVAGK 2001 (2272)
T ss_pred eEEEee-EEEEcCCcEEEEECCCCCcHHHHHHHHhCCC--CCCcc-----EEEECCE
Confidence 456665 5689999999999999999999998888764 22333 4666654
No 474
>PLN03073 ABC transporter F family; Provisional
Probab=97.70 E-value=0.00021 Score=71.42 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=36.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--|..|+.+.|+|++|||||||+..++.......+.++ .+.|+.-+
T Consensus 192 ll~~i-sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g---~I~~~~Q~ 243 (718)
T PLN03073 192 LIVDA-SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNC---QILHVEQE 243 (718)
T ss_pred EEECC-EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCC---EEEEEecc
Confidence 45554 457899999999999999999999988764210012233 77887643
No 475
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.69 E-value=0.00034 Score=72.02 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=85.8
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHHHHHhCCCCC
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQLSHTFRPSND 101 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i~~~~~~~~~ 101 (302)
.+.|+.+ +--+++|+.+.|+||+||||||....+-+.+. +.. ..++||..+ .++...|++-..- -.++|
T Consensus 1003 ~~Il~~l-~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~----G~V~IDg~dik~lnl~~LR~~i~l-VsQEP 1073 (1228)
T KOG0055|consen 1003 VPVLNNL-SLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDA----GKVKIDGVDIKDLNLKWLRKQIGL-VSQEP 1073 (1228)
T ss_pred chhhcCC-cEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCC----CeEEECCcccccCCHHHHHHhcce-eccCc
Confidence 4445554 45789999999999999999999977766653 223 469999764 4566666432211 12222
Q ss_pred ----CCCCCcEEEEe-CCCHHHHHHHHH--HHHHHHHhc---------------------------cCCCCCeeEEEEec
Q 022155 102 ----HNPCDYIFVQS-VHSVDQLLDIMP--KIESFIKNS---------------------------SNSRLPIRLIVIDS 147 (302)
Q Consensus 102 ----~~~l~~i~~~~-~~~~~~l~~~l~--~l~~~l~~~---------------------------~~~~~~~~lvVIDs 147 (302)
.+..+||.+-. .-+.+++.+... .+.+++.+- +. -++++++.+|+
T Consensus 1074 ~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi-lRnPkILLLDE 1152 (1228)
T KOG0055|consen 1074 VLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI-LRNPKILLLDE 1152 (1228)
T ss_pred hhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH-HcCCCeeeeec
Confidence 13446776652 235555554432 122222110 00 13459999999
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCC
Q 022155 148 IAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLME 199 (302)
Q Consensus 148 i~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~ 199 (302)
-++.+..+ .+| .+. +.|.+.. .+.|+|++.|=-+.+.
T Consensus 1153 ATSALDse--------SEr--vVQ---eALd~a~--~gRT~IvIAHRLSTIq 1189 (1228)
T KOG0055|consen 1153 ATSALDSE--------SER--VVQ---EALDRAM--EGRTTIVIAHRLSTIQ 1189 (1228)
T ss_pred cchhhhhh--------hHH--HHH---HHHHHhh--cCCcEEEEecchhhhh
Confidence 88865332 222 223 3344332 3677777777555444
No 476
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.69 E-value=0.00015 Score=66.76 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=30.8
Q ss_pred CChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 23 GCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 23 G~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|...+|-.+ -+.+|+.+.|+||+|+|||+++..++...
T Consensus 155 ~~R~id~~~--pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 155 STRVLDLFA--PIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred ceeeeeeEE--EeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 334446554 57899999999999999999999888775
No 477
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.69 E-value=0.00046 Score=66.58 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=46.7
Q ss_pred ccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCC----CCeEEEEeCCCCCCHHHHHHHH
Q 022155 21 TVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGL----SASSLYLHTEFPFPMRRLHQLS 93 (302)
Q Consensus 21 ~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~----~~~vlyid~e~~~~~~rl~~i~ 93 (302)
|.|..-++++ +-.+++|+-+.|.||||||||+|...+|..+. .-.|.. +..++|+.-.-.++.-.|++..
T Consensus 403 p~~~~ll~~l-~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP--~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l 476 (604)
T COG4178 403 PDGQTLLSEL-NFEVRPGERLLITGESGAGKTSLLRALAGLWP--WGSGRISMPADSALLFLPQRPYLPQGTLREAL 476 (604)
T ss_pred CCCCeeeccc-eeeeCCCCEEEEECCCCCCHHHHHHHHhccCc--cCCCceecCCCCceEEecCCCCCCCccHHHHH
Confidence 4444444443 45789999999999999999999999998863 222221 1246777755555555555544
No 478
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.68 E-value=1e-05 Score=66.86 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=38.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHHHHHhC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQLSHTFR 97 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i~~~~~ 97 (302)
.+.+|+++.+.||+|+||||.-+.++..+. +.. .-+++|..+ .+|..+-.+++..+-
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~-----G~i~ld~~diT~lPm~~RArlGigYL 84 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDS-----GKILLDDEDITKLPMHKRARLGIGYL 84 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCC-----ceEEECCcccccCChHHHhhcCcccc
Confidence 578999999999999999998877666542 222 357888765 455544344444433
No 479
>PLN03232 ABC transporter C family member; Provisional
Probab=97.68 E-value=0.00055 Score=73.99 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+++ +--+++|+.+.|+||+|||||||+..++...
T Consensus 632 vL~~i-nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~ 667 (1495)
T PLN03232 632 TLSDI-NLEIPVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1495)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34444 4468999999999999999999999888775
No 480
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.67 E-value=0.0004 Score=57.77 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccC
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQL 64 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l 64 (302)
++.|.||+|+|||+++.+++....+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l 25 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM 25 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3679999999999999999866543
No 481
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.67 E-value=0.0003 Score=69.74 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.2
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+--|.+|+++.|+||+|||||||+..++...
T Consensus 339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 369 (635)
T PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQL 369 (635)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468899999999999999999998888753
No 482
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.67 E-value=0.00039 Score=59.23 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.++.|.||+|+|||||+.+++...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~ 53 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIV 53 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHH
Confidence 3789999999999999999998654
No 483
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.66 E-value=2.4e-05 Score=77.52 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+.+|+++.|+|++|+|||||+..++...
T Consensus 23 il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 58 (648)
T PRK10535 23 VLKGI-SLDIYAGEMVAIVGASGSGKSTLMNILGCLD 58 (648)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45444 4468899999999999999999999888764
No 484
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.66 E-value=0.00048 Score=65.74 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|++...-+.|+||||+|||.+|..+|..+
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 67777779999999999999999998876
No 485
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00014 Score=70.90 Aligned_cols=119 Identities=17% Similarity=0.235 Sum_probs=75.5
Q ss_pred hhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEE
Q 022155 30 CLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIF 109 (302)
Q Consensus 30 ~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~ 109 (302)
+++-|+.+.+=+.++||||+|||.+|..+|-++ +.-|++-.++ +-+ |++
T Consensus 697 LfssglrkRSGILLYGPPGTGKTLlAKAVATEc-----------sL~FlSVKGP---ELL-----------------NMY 745 (953)
T KOG0736|consen 697 LFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-----------SLNFLSVKGP---ELL-----------------NMY 745 (953)
T ss_pred hhhccccccceeEEECCCCCchHHHHHHHHhhc-----------eeeEEeecCH---HHH-----------------HHH
Confidence 345688877779999999999999999888776 4567777663 222 223
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhc-cCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEE
Q 022155 110 VQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSD-FDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAV 188 (302)
Q Consensus 110 ~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~-~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~v 188 (302)
+- .+.+.+.+++++.+ ...+.+|++|.|.++...- .++..+....| ++.+++..|..+.+...--|
T Consensus 746 VG--qSE~NVR~VFerAR---------~A~PCVIFFDELDSlAP~RG~sGDSGGVMDR--VVSQLLAELDgls~~~s~~V 812 (953)
T KOG0736|consen 746 VG--QSEENVREVFERAR---------SAAPCVIFFDELDSLAPNRGRSGDSGGVMDR--VVSQLLAELDGLSDSSSQDV 812 (953)
T ss_pred hc--chHHHHHHHHHHhh---------ccCCeEEEeccccccCccCCCCCCccccHHH--HHHHHHHHhhcccCCCCCce
Confidence 22 23344455555443 2345999999999976421 22233345555 45677777777775444445
Q ss_pred EEEe
Q 022155 189 LVTN 192 (302)
Q Consensus 189 iv~n 192 (302)
+++.
T Consensus 813 FViG 816 (953)
T KOG0736|consen 813 FVIG 816 (953)
T ss_pred EEEe
Confidence 5544
No 486
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00046 Score=56.66 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
--|.+|+++-|.||+|+|||||+..+|.... +..| -+|+..+.
T Consensus 23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G-----~v~~~~~~ 65 (209)
T COG4133 23 FTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAG-----EVYWQGEP 65 (209)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCC-----eEEecCCC
Confidence 3578999999999999999999998888753 2333 36666553
No 487
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=97.66 E-value=0.00025 Score=67.21 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=40.2
Q ss_pred cccCCCCCCcccc-CChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHcc
Q 022155 10 LLDNPLTTEKCTV-GCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQ 63 (302)
Q Consensus 10 l~~~~~~~~~i~t-G~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~ 63 (302)
+++.+...-.-|| |.-.++.+ .--++.|+-+.|+||+|||||.|...++..+-
T Consensus 433 ~i~~e~v~l~tPt~g~~lie~L-s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 433 AIEFEEVSLSTPTNGDLLIENL-SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred eEEeeeeeecCCCCCceeeeee-eeEecCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 4555555445566 55555554 66899999999999999999999999988763
No 488
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.66 E-value=1.6e-05 Score=72.14 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=31.5
Q ss_pred CeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 139 ~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
+++++++|+..+-+ |...| ..+...|+++.++.+.++|+++|...
T Consensus 118 ~p~lllLDEP~s~L---------D~~~~----~~l~~~l~~l~~~~g~tiiivTHd~~ 162 (325)
T TIGR01187 118 KPKILLLDEPLSAL---------DKKLR----DQMQLELKTIQEQLGITFVFVTHDQE 162 (325)
T ss_pred CCCEEEEeCCCccC---------CHHHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34999999988744 22222 35567777777788999999998543
No 489
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.65 E-value=0.00048 Score=59.36 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=63.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQL 119 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l 119 (302)
-+.|+|++|||||++++.+..... ... ..+|+-++..-. ...+ -+..+ ++....+.+++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f-----~~I~l~t~~~n~--~~~~-----------~i~p~-~i~~~~~~e~l 73 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKF-----DHIFLITPEYNN--EYYK-----------YIWPD-HIFKVFDKEEL 73 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccC-----CEEEEEecCCch--hhhh-----------hcchh-hccccccHHHH
Confidence 467999999999999999987642 111 345554442110 0000 01111 22233344444
Q ss_pred HHHHHH----HHHHHHhccCC-CCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecc
Q 022155 120 LDIMPK----IESFIKNSSNS-RLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194 (302)
Q Consensus 120 ~~~l~~----l~~~l~~~~~~-~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~ 194 (302)
...+.. +.+........ ..+-.|||+|.++.- ..|.+.+..+.. -.+.+++++|++.|.
T Consensus 74 e~~l~~~k~~I~k~~~k~~~~k~~~~~LiIlDD~~~~------------~~k~~~l~~~~~----~gRH~~is~i~l~Q~ 137 (241)
T PF04665_consen 74 EYILIRQKEKIEKYIKKSPQKKNNPRFLIILDDLGDK------------KLKSKILRQFFN----NGRHYNISIIFLSQS 137 (241)
T ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCeEEEEeCCCCc------------hhhhHHHHHHHh----cccccceEEEEEeee
Confidence 433333 33333211111 123479999997641 112223344443 356789999999997
Q ss_pred cccC
Q 022155 195 VDLM 198 (302)
Q Consensus 195 ~~~~ 198 (302)
....
T Consensus 138 ~~~l 141 (241)
T PF04665_consen 138 YFHL 141 (241)
T ss_pred cccC
Confidence 6544
No 490
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00081 Score=62.85 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=55.6
Q ss_pred ccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCC
Q 022155 21 TVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSN 100 (302)
Q Consensus 21 ~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~ 100 (302)
.+|-+.|.++ +--+++|+.+.|+||+|+||||++.-+.+.... .. .++-||..+- ..-....+-.+.....
T Consensus 548 ~p~k~vl~di-sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv---~s----GsI~iDgqdI-rnvt~~SLRs~IGVVP 618 (790)
T KOG0056|consen 548 DPGKPVLSDI-SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV---NS----GSITIDGQDI-RNVTQSSLRSSIGVVP 618 (790)
T ss_pred CCCCceeecc-eEEecCCcEEEEECCCCCchhHHHHHHHHHhhc---cC----ceEEEcCchH-HHHHHHHHHHhcCccc
Confidence 4444555554 346789999999999999999999888777642 22 5799997642 1111222333322222
Q ss_pred C------CCCCCcEEEEeCC-CHHHHHH
Q 022155 101 D------HNPCDYIFVQSVH-SVDQLLD 121 (302)
Q Consensus 101 ~------~~~l~~i~~~~~~-~~~~l~~ 121 (302)
. ++.+.||.+.++. +.+++.+
T Consensus 619 QDtvLFNdTI~yNIryak~~Asneevya 646 (790)
T KOG0056|consen 619 QDTVLFNDTILYNIRYAKPSASNEEVYA 646 (790)
T ss_pred CcceeecceeeeheeecCCCCChHHHHH
Confidence 2 3456677776553 3444443
No 491
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.64 E-value=0.0012 Score=53.71 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.2
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|-...|+++-++||+|+||||++-.+|...
T Consensus 19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~ 49 (248)
T COG4138 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT 49 (248)
T ss_pred ccccccceEEEEECCCCccHHHHHHHHhCCC
Confidence 4678899999999999999999998887753
No 492
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.64 E-value=0.00066 Score=62.18 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=82.6
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCC-C
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPF-P 85 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~-~ 85 (302)
|.+.+++..-.+.++||+..+|-+| .+-.|+=+.|+..+|+|||||+-.||.+.. .. ..|+=+=+|..- -
T Consensus 134 pp~pm~R~~I~~~l~tGVRaIDgll--T~G~GQRiGIFAgsGVGKStLLgMiar~t~----aD---v~ViaLIGERGREV 204 (441)
T COG1157 134 PPNPLKRRPIEEPLDTGVRAIDGLL--TCGKGQRIGIFAGSGVGKSTLLGMIARNTE----AD---VNVIALIGERGREV 204 (441)
T ss_pred CCCchhcccccccccccceeeeccc--ccccCceeEEEecCCCcHHHHHHHHhcccc----CC---EEEEEEeeccchhH
Confidence 4456777777899999999999998 456899999999999999999999988763 22 155555556432 1
Q ss_pred HHHHHHHHHHhCCCCCCCCC-CcEEEEeCCCHHHHHH-----HHHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 86 MRRLHQLSHTFRPSNDHNPC-DYIFVQSVHSVDQLLD-----IMPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 86 ~~rl~~i~~~~~~~~~~~~l-~~i~~~~~~~~~~l~~-----~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
.+.+++.... +-+ .-+.+....+...+.. ....+.+++.+ +.+--|+++||++.+..
T Consensus 205 rEFIE~~Lg~-------egl~rsViVvATSD~s~l~R~~aa~~At~IAEyFRD----qG~~VLL~mDSlTRfA~ 267 (441)
T COG1157 205 REFIEKDLGE-------EGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRD----QGKRVLLIMDSLTRFAM 267 (441)
T ss_pred HHHHHHhcch-------hhccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh----CCCeEEEEeecHHHHHH
Confidence 2333333321 112 3355555444333321 12245566665 45558889999998653
No 493
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.64 E-value=0.00055 Score=65.89 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=38.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCC----CCeEEEEeCCCCCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGL----SASSLYLHTEFPFP 85 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~----~~~vlyid~e~~~~ 85 (302)
-|+.+ .-.+.+|+-+.|+|++|+|||||+.-++.... | ..|.. ..++-|+.-+..+.
T Consensus 18 l~~~~-~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-~-~~G~i~~~~~~~v~~l~Q~~~~~ 78 (530)
T COG0488 18 LLENV-SLTLNPGERIGLVGRNGAGKSTLLKILAGELE-P-DSGEVTRPKGLRVGYLSQEPPLD 78 (530)
T ss_pred eecCC-cceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-C-CCCeEeecCCceEEEeCCCCCcC
Confidence 34544 45789999999999999999999988877642 2 22321 12566776554443
No 494
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=0.00061 Score=67.52 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=30.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +-.|.+|+++.|+||+|||||||+..|+...
T Consensus 16 ~l~~v-s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 16 LLDNA-TATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred eecCc-EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4578999999999999999999999888753
No 495
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=0.00019 Score=71.13 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=29.0
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+.+ +--+.+|+++.|+||+|||||||+..++...
T Consensus 328 l~~i-sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 328 LDSI-KLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred eccc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4433 3468899999999999999999999888754
No 496
>PLN03130 ABC transporter C family member; Provisional
Probab=97.61 E-value=0.00088 Score=72.82 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=30.1
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+++ +--+++|+++.|+||+|||||||+..++...
T Consensus 633 L~~i-nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~ 667 (1622)
T PLN03130 633 LSNI-NLDVPVGSLVAIVGSTGEGKTSLISAMLGEL 667 (1622)
T ss_pred eece-eEEecCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4443 4468999999999999999999999998885
No 497
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.61 E-value=0.00056 Score=64.68 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=28.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
-+.|+||+|+|||+|+..++..+. ....+ .+|+|++++
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~---~~v~yi~~~ 169 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVV-QNEPD---LRVMYITSE 169 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHH-HhCCC---CeEEEEEHH
Confidence 489999999999999988887653 10112 379999975
No 498
>PF05625 PAXNEB: PAXNEB protein; InterPro: IPR008728 The RNA polymerase II elongator complex is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation [, ]. It may also play some role in wobble uridine tRNA modification []. This entry represents the ELP4 subunit. ELP4 is not required for the association of the complex with nascent RNA transcript, but is required for complex integrity and histone acetyltransferase activity. It is also required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA in yeast species.; GO: 0006357 regulation of transcription from RNA polymerase II promoter, 0033588 Elongator holoenzyme complex; PDB: 4EJS_A 4A8J_A.
Probab=97.60 E-value=0.00058 Score=62.87 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcc-CCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHH--HcCcEEEEEeccc
Q 022155 119 LLDIMPKIESFIKNSS-NSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAV--GFGLAVLVTNQVV 195 (302)
Q Consensus 119 l~~~l~~l~~~l~~~~-~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~--~~~~~viv~n~~~ 195 (302)
+..++..|.+.+.+.. ....++-.|+|-++....+...... ... .+..++..||.|.+ ..++++++|--..
T Consensus 179 ~~~ll~~i~~~i~~~~~~~~~~v~RI~I~sl~SP~w~~~~~~--~~~----~ll~FL~~LR~LlR~~~s~~v~~iTlP~~ 252 (363)
T PF05625_consen 179 YRSLLQQIQQIISKSGFSPPSKVLRIVIPSLGSPLWYPPSAS--QPS----ELLRFLHSLRALLRKYSSNAVAMITLPSH 252 (363)
T ss_dssp HHHHHHHHHHHHHH----TTTSEEEEEETTTT-TTTS-GGGG--BHH----HHHHHHHHHHHHHHHTTTTEEEEEEEEGT
T ss_pred HHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCcccCCcccc--cHH----HHHHHHHHHHHHHhccCCCEEEEEEECHH
Confidence 5667777777776520 0246789999999998776542211 111 26789999999999 5566666664221
Q ss_pred ccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecC
Q 022155 196 DLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245 (302)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~ 245 (302)
++. ..+.+-..|.+++|+.|.|+--..
T Consensus 253 -------------------L~~----~~~~~~~~l~~l~D~vi~Le~F~~ 279 (363)
T PF05625_consen 253 -------------------LYP----RSPSLVRRLEHLADGVIELESFAG 279 (363)
T ss_dssp -------------------TS-------HHHHHHHHHHSSEEEEEEE--H
T ss_pred -------------------Hhc----cChHHHHHHHHhCCEEEEeecCCC
Confidence 110 034555778899999999987553
No 499
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.60 E-value=9.6e-05 Score=60.79 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=33.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
++|+++.|.|+|||||||++..++.... ..|+ ++.+++++
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~---~~g~---~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR---EAGY---PVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC---eEEEEcCc
Confidence 4789999999999999999999998763 3444 78899876
No 500
>PRK12678 transcription termination factor Rho; Provisional
Probab=97.60 E-value=0.00026 Score=67.69 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=38.9
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.+.+|+..+|-++ -|-.|+-.+|+||||+|||+|+..|+...
T Consensus 397 ~e~~~~giRvIDll~--PIGkGQR~LIvgpp~aGKTtLL~~IAn~i 440 (672)
T PRK12678 397 TEPKKLTTRVIDLIM--PIGKGQRGLIVSPPKAGKTTILQNIANAI 440 (672)
T ss_pred cCcccccceeeeeec--ccccCCEeEEeCCCCCCHHHHHHHHHHHH
Confidence 478899999999887 56799999999999999999998887754
Done!