Query 022155
Match_columns 302
No_of_seqs 220 out of 2381
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 14:49:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v5w_A DMC1, meiotic recombina 100.0 3.1E-38 1.1E-42 286.8 23.3 248 10-301 94-342 (343)
2 2z43_A DNA repair and recombin 100.0 6.3E-38 2.2E-42 282.8 23.8 245 10-301 79-323 (324)
3 2i1q_A DNA repair and recombin 100.0 1.2E-37 4E-42 280.9 23.1 244 9-299 69-322 (322)
4 3lda_A DNA repair protein RAD5 100.0 1.8E-37 6.2E-42 285.7 23.6 249 8-301 148-396 (400)
5 1pzn_A RAD51, DNA repair and r 100.0 5.1E-36 1.8E-40 272.5 22.5 248 9-299 102-349 (349)
6 1n0w_A DNA repair protein RAD5 100.0 7.1E-34 2.4E-38 245.2 23.7 242 16-302 2-243 (243)
7 3hr8_A Protein RECA; alpha and 100.0 8E-33 2.7E-37 250.5 22.5 229 17-300 39-273 (356)
8 3io5_A Recombination and repai 100.0 7.3E-33 2.5E-37 243.9 20.5 226 17-299 4-243 (333)
9 4a74_A DNA repair and recombin 100.0 4.4E-30 1.5E-34 219.6 23.9 229 16-299 3-231 (231)
10 2cvh_A DNA repair and recombin 100.0 3.5E-30 1.2E-34 218.8 21.5 219 19-301 1-220 (220)
11 1u94_A RECA protein, recombina 100.0 8.2E-30 2.8E-34 231.6 22.7 230 15-299 39-274 (356)
12 1xp8_A RECA protein, recombina 100.0 7.6E-30 2.6E-34 232.5 21.9 231 14-299 49-286 (366)
13 2zr9_A Protein RECA, recombina 100.0 1E-29 3.6E-34 230.7 22.2 230 15-299 37-272 (349)
14 2zts_A Putative uncharacterize 100.0 1.9E-27 6.5E-32 205.6 20.3 221 15-300 7-245 (251)
15 3cmu_A Protein RECA, recombina 100.0 1.8E-27 6.2E-32 250.5 23.0 230 15-300 708-944 (2050)
16 3cmu_A Protein RECA, recombina 99.9 6.9E-27 2.4E-31 246.1 20.4 230 15-299 10-245 (2050)
17 3cmw_A Protein RECA, recombina 99.9 5.9E-26 2E-30 237.0 21.1 230 15-299 359-594 (1706)
18 2dr3_A UPF0273 protein PH0284; 99.9 4.4E-25 1.5E-29 190.4 19.1 213 18-301 3-235 (247)
19 3cmw_A Protein RECA, recombina 99.9 8.8E-24 3E-28 220.8 22.5 228 14-298 1406-1641(1706)
20 2w0m_A SSO2452; RECA, SSPF, un 99.9 1E-22 3.6E-27 173.8 21.0 212 18-302 3-232 (235)
21 3bh0_A DNAB-like replicative h 99.9 3.5E-22 1.2E-26 179.1 22.8 220 15-290 46-296 (315)
22 2q6t_A DNAB replication FORK h 99.9 1.4E-21 4.7E-26 183.2 24.1 224 16-293 179-431 (444)
23 3bgw_A DNAB-like replicative h 99.9 2.3E-20 8E-25 174.4 25.0 223 15-293 175-428 (444)
24 1q57_A DNA primase/helicase; d 99.9 2.2E-20 7.7E-25 177.7 24.8 231 15-300 219-482 (503)
25 2r6a_A DNAB helicase, replicat 99.9 3.8E-20 1.3E-24 173.8 20.5 221 15-291 181-430 (454)
26 2ehv_A Hypothetical protein PH 99.8 3.6E-19 1.2E-23 153.5 20.4 220 16-301 8-246 (251)
27 4a1f_A DNAB helicase, replicat 99.8 6.6E-20 2.3E-24 164.7 12.5 194 13-244 22-242 (338)
28 1cr0_A DNA primase/helicase; R 99.8 1.8E-18 6E-23 153.5 20.3 229 15-301 12-276 (296)
29 1nlf_A Regulatory protein REPA 99.8 4.4E-19 1.5E-23 156.2 11.9 158 17-198 10-184 (279)
30 1tf7_A KAIC; homohexamer, hexa 99.8 8.3E-18 2.8E-22 160.7 18.8 213 16-300 259-480 (525)
31 3bs4_A Uncharacterized protein 99.7 1.4E-15 4.8E-20 131.5 18.2 69 19-95 2-70 (260)
32 1tf7_A KAIC; homohexamer, hexa 99.6 3.7E-14 1.3E-18 135.4 20.5 225 7-299 9-246 (525)
33 2vhj_A Ntpase P4, P4; non- hyd 99.6 3.7E-15 1.3E-19 131.9 6.7 133 17-194 103-235 (331)
34 3tui_C Methionine import ATP-b 98.7 1.3E-08 4.4E-13 92.0 6.2 165 10-196 24-225 (366)
35 1c9k_A COBU, adenosylcobinamid 98.7 4.4E-08 1.5E-12 79.7 7.7 130 40-197 1-139 (180)
36 3gfo_A Cobalt import ATP-bindi 98.6 2.9E-09 9.8E-14 93.0 -0.2 65 10-82 7-71 (275)
37 3tif_A Uncharacterized ABC tra 98.6 6.9E-08 2.4E-12 82.3 8.1 48 26-81 20-67 (235)
38 2b8t_A Thymidine kinase; deoxy 98.6 5E-08 1.7E-12 82.4 5.9 119 36-198 10-129 (223)
39 4gp7_A Metallophosphoesterase; 98.6 2E-07 6.9E-12 75.4 8.9 24 34-57 5-28 (171)
40 2pcj_A ABC transporter, lipopr 98.6 2.6E-07 8.7E-12 78.2 9.8 35 26-61 19-53 (224)
41 4g1u_C Hemin import ATP-bindin 98.5 3.9E-07 1.3E-11 79.1 8.7 63 10-81 11-73 (266)
42 3fvq_A Fe(3+) IONS import ATP- 98.5 1.9E-08 6.6E-13 90.7 -0.3 37 25-62 18-54 (359)
43 3rlf_A Maltose/maltodextrin im 98.4 6.1E-08 2.1E-12 88.1 2.9 37 25-62 17-53 (381)
44 2nq2_C Hypothetical ABC transp 98.4 4.6E-07 1.6E-11 78.1 8.0 36 26-62 20-55 (253)
45 2olj_A Amino acid ABC transpor 98.4 3.4E-07 1.2E-11 79.3 7.2 36 26-62 39-74 (263)
46 2yyz_A Sugar ABC transporter, 98.4 6.2E-08 2.1E-12 87.6 2.0 36 26-62 18-53 (359)
47 2kjq_A DNAA-related protein; s 98.4 5.5E-06 1.9E-10 65.3 13.0 40 37-82 35-74 (149)
48 1g6h_A High-affinity branched- 98.4 2.8E-07 9.5E-12 79.6 5.7 49 25-81 21-69 (257)
49 3d31_A Sulfate/molybdate ABC t 98.4 4.4E-07 1.5E-11 81.7 7.1 36 26-62 15-50 (348)
50 2qi9_C Vitamin B12 import ATP- 98.4 2.2E-07 7.7E-12 79.8 4.9 36 26-62 15-50 (249)
51 2it1_A 362AA long hypothetical 98.4 6.4E-08 2.2E-12 87.6 1.5 36 26-62 18-53 (362)
52 1v43_A Sugar-binding transport 98.4 5.5E-08 1.9E-12 88.4 1.1 36 26-62 26-61 (372)
53 1z47_A CYSA, putative ABC-tran 98.4 5.3E-08 1.8E-12 87.9 0.5 37 25-62 29-65 (355)
54 1vpl_A ABC transporter, ATP-bi 98.3 1.1E-06 3.8E-11 75.8 7.9 36 26-62 30-65 (256)
55 4b4t_J 26S protease regulatory 98.3 2.6E-06 9E-11 77.7 10.6 123 34-198 178-300 (405)
56 1oxx_K GLCV, glucose, ABC tran 98.3 4.3E-08 1.5E-12 88.5 -1.5 36 26-62 20-55 (353)
57 1b0u_A Histidine permease; ABC 98.3 1.4E-06 4.7E-11 75.4 8.1 36 26-62 21-56 (262)
58 3ec2_A DNA replication protein 98.3 1.5E-06 5.2E-11 70.5 7.8 44 33-81 33-76 (180)
59 1ji0_A ABC transporter; ATP bi 98.3 3.9E-07 1.3E-11 77.9 4.2 36 26-62 21-56 (240)
60 2yz2_A Putative ABC transporte 98.3 2E-07 6.7E-12 81.0 2.2 36 26-62 22-57 (266)
61 3h4m_A Proteasome-activating n 98.3 6.4E-06 2.2E-10 71.7 11.4 39 34-81 47-85 (285)
62 4b4t_K 26S protease regulatory 98.3 4.4E-06 1.5E-10 77.1 10.7 122 34-198 202-324 (428)
63 1g29_1 MALK, maltose transport 98.3 3.1E-07 1.1E-11 83.5 3.0 36 26-62 18-53 (372)
64 2yhs_A FTSY, cell division pro 98.3 8.4E-06 2.9E-10 76.2 12.4 45 34-85 289-333 (503)
65 2ihy_A ABC transporter, ATP-bi 98.2 1.2E-06 4E-11 76.6 6.1 48 26-81 36-83 (279)
66 4b4t_M 26S protease regulatory 98.2 3.5E-06 1.2E-10 77.8 9.4 124 34-199 211-334 (434)
67 1mv5_A LMRA, multidrug resista 98.2 1E-05 3.5E-10 69.1 11.3 36 26-62 17-52 (243)
68 4b4t_L 26S protease subunit RP 98.2 6E-06 2E-10 76.4 10.3 124 34-199 211-334 (437)
69 2onk_A Molybdate/tungstate ABC 98.2 6.3E-07 2.1E-11 76.6 3.4 34 27-62 15-48 (240)
70 3b5x_A Lipid A export ATP-bind 98.2 3.5E-06 1.2E-10 81.2 8.3 49 25-81 357-405 (582)
71 1sgw_A Putative ABC transporte 98.2 2.9E-06 1E-10 71.1 6.8 37 25-62 23-59 (214)
72 3bk7_A ABC transporter ATP-bin 98.2 1.7E-05 5.7E-10 76.6 13.0 138 34-196 378-533 (607)
73 3nh6_A ATP-binding cassette SU 98.2 6.6E-07 2.3E-11 79.1 2.8 50 24-81 67-116 (306)
74 3e70_C DPA, signal recognition 98.2 3.8E-05 1.3E-09 68.5 14.2 40 36-81 127-166 (328)
75 4b4t_I 26S protease regulatory 98.2 7.6E-06 2.6E-10 75.1 9.7 125 33-199 211-335 (437)
76 1fnn_A CDC6P, cell division co 98.1 4.9E-05 1.7E-09 68.7 15.1 120 40-194 46-168 (389)
77 1yqt_A RNAse L inhibitor; ATP- 98.1 1.1E-05 3.7E-10 76.9 10.2 139 35-196 309-463 (538)
78 1rj9_A FTSY, signal recognitio 98.1 6.7E-05 2.3E-09 66.2 14.3 39 37-81 101-139 (304)
79 4b4t_H 26S protease regulatory 98.1 1.4E-05 4.7E-10 74.0 9.9 29 34-62 239-267 (467)
80 2orw_A Thymidine kinase; TMTK, 98.1 1E-05 3.5E-10 66.1 8.1 39 37-81 2-40 (184)
81 3kl4_A SRP54, signal recogniti 98.1 4.6E-05 1.6E-09 70.4 13.4 43 37-86 96-138 (433)
82 3dm5_A SRP54, signal recogniti 98.1 4.6E-05 1.6E-09 70.4 13.4 43 37-86 99-141 (443)
83 3ozx_A RNAse L inhibitor; ATP 98.1 1.2E-05 4E-10 76.6 9.5 45 139-196 403-447 (538)
84 2obl_A ESCN; ATPase, hydrolase 98.0 1.1E-05 3.7E-10 72.6 8.0 53 8-62 43-95 (347)
85 3b60_A Lipid A export ATP-bind 98.0 3.8E-06 1.3E-10 81.0 5.0 48 26-81 358-405 (582)
86 1vma_A Cell division protein F 98.0 6.9E-05 2.3E-09 66.2 12.6 45 35-86 101-145 (306)
87 4a8j_A Elongator complex prote 98.0 1.5E-05 5.1E-10 71.2 8.4 94 118-245 199-294 (361)
88 3gd7_A Fusion complex of cysti 98.0 5.2E-06 1.8E-10 75.8 5.5 50 24-82 34-83 (390)
89 1yqt_A RNAse L inhibitor; ATP- 98.0 1.9E-05 6.5E-10 75.2 9.6 35 26-62 37-71 (538)
90 3ice_A Transcription terminati 98.0 6.1E-05 2.1E-09 68.1 12.2 115 18-153 156-275 (422)
91 1j8m_F SRP54, signal recogniti 98.0 2.5E-05 8.6E-10 68.7 9.3 56 21-82 74-136 (297)
92 3j16_B RLI1P; ribosome recycli 98.0 4.6E-05 1.6E-09 73.5 11.6 30 33-62 373-402 (608)
93 3oaa_A ATP synthase subunit al 98.0 8.8E-05 3E-09 69.0 12.9 128 8-152 134-267 (513)
94 2qe7_A ATP synthase subunit al 98.0 7.6E-05 2.6E-09 69.6 12.4 127 9-152 135-267 (502)
95 2v1u_A Cell division control p 97.9 5.8E-05 2E-09 68.1 11.3 101 36-152 42-143 (387)
96 2dpy_A FLII, flagellum-specifi 97.9 2E-05 6.8E-10 73.2 8.2 64 9-81 130-193 (438)
97 2qby_A CDC6 homolog 1, cell di 97.9 6.7E-06 2.3E-10 74.2 4.8 99 36-153 43-142 (386)
98 2yl4_A ATP-binding cassette SU 97.9 5.7E-06 2E-10 79.9 4.3 48 26-81 359-406 (595)
99 2ce7_A Cell division protein F 97.9 5.8E-05 2E-09 70.6 10.9 120 35-198 48-167 (476)
100 1lv7_A FTSH; alpha/beta domain 97.9 7.1E-05 2.4E-09 64.0 10.7 34 39-81 46-79 (257)
101 3t15_A Ribulose bisphosphate c 97.9 2.1E-05 7E-10 69.1 6.9 38 34-80 32-69 (293)
102 3bk7_A ABC transporter ATP-bin 97.9 2.8E-05 9.5E-10 75.1 8.4 35 26-62 107-141 (607)
103 2r9v_A ATP synthase subunit al 97.9 8.8E-05 3E-09 69.2 11.2 127 9-152 148-280 (515)
104 1sky_E F1-ATPase, F1-ATP synth 97.9 0.00015 5E-09 67.4 12.6 64 9-79 124-187 (473)
105 1xwi_A SKD1 protein; VPS4B, AA 97.9 9.7E-05 3.3E-09 65.7 11.0 42 32-81 39-80 (322)
106 1zu4_A FTSY; GTPase, signal re 97.9 9.4E-05 3.2E-09 65.7 10.8 45 35-86 102-146 (320)
107 2ck3_A ATP synthase subunit al 97.9 0.00014 4.7E-09 68.0 12.2 130 9-152 135-275 (510)
108 3j16_B RLI1P; ribosome recycli 97.8 4.5E-05 1.5E-09 73.6 9.2 29 34-62 99-127 (608)
109 3qf4_A ABC transporter, ATP-bi 97.8 7.3E-06 2.5E-10 79.0 3.7 49 26-82 358-406 (587)
110 1fx0_A ATP synthase alpha chai 97.8 7.5E-05 2.6E-09 69.7 10.2 127 9-152 136-268 (507)
111 3cf0_A Transitional endoplasmi 97.8 2.7E-05 9.2E-10 68.6 7.0 29 34-62 45-73 (301)
112 1jbk_A CLPB protein; beta barr 97.8 5.7E-05 2E-09 60.7 8.4 26 37-62 42-67 (195)
113 3qf4_B Uncharacterized ABC tra 97.8 6.7E-06 2.3E-10 79.5 3.0 48 26-81 370-417 (598)
114 3bos_A Putative DNA replicatio 97.8 8.3E-05 2.8E-09 62.3 9.5 39 37-81 51-89 (242)
115 2ck3_D ATP synthase subunit be 97.8 0.00042 1.4E-08 64.3 14.5 66 9-81 126-191 (482)
116 3jvv_A Twitching mobility prot 97.8 5.5E-05 1.9E-09 68.2 8.5 28 35-62 120-147 (356)
117 1fx0_B ATP synthase beta chain 97.8 0.0003 1E-08 65.5 13.3 67 8-81 137-203 (498)
118 4a82_A Cystic fibrosis transme 97.8 1.2E-05 4.1E-10 77.4 3.5 48 26-81 356-403 (578)
119 3ozx_A RNAse L inhibitor; ATP 97.7 5.5E-05 1.9E-09 72.0 7.9 28 35-62 22-49 (538)
120 2ffh_A Protein (FFH); SRP54, s 97.7 0.00042 1.4E-08 63.8 13.4 43 37-86 97-139 (425)
121 2qz4_A Paraplegin; AAA+, SPG7, 97.7 0.00019 6.5E-09 61.2 10.6 40 34-82 35-74 (262)
122 2p65_A Hypothetical protein PF 97.7 4E-05 1.4E-09 61.6 5.9 26 37-62 42-67 (187)
123 3cf2_A TER ATPase, transitiona 97.7 7E-05 2.4E-09 74.2 8.6 122 33-199 233-354 (806)
124 2qp9_X Vacuolar protein sortin 97.7 0.00015 5E-09 65.4 9.8 30 33-62 79-108 (355)
125 3l0o_A Transcription terminati 97.7 0.00014 4.9E-09 65.7 9.5 59 17-81 156-214 (427)
126 3vr4_A V-type sodium ATPase ca 97.7 0.00035 1.2E-08 66.1 12.3 128 9-152 205-342 (600)
127 1w4r_A Thymidine kinase; type 97.7 0.00014 4.9E-09 59.5 8.3 110 37-198 19-130 (195)
128 3eie_A Vacuolar protein sortin 97.7 0.0001 3.4E-09 65.5 8.0 39 33-80 46-84 (322)
129 2px0_A Flagellar biosynthesis 97.7 0.0001 3.4E-09 64.8 7.9 42 36-82 103-144 (296)
130 2c61_A A-type ATP synthase non 97.7 0.00022 7.4E-09 66.2 10.1 132 9-153 125-263 (469)
131 2j9r_A Thymidine kinase; TK1, 97.6 0.00016 5.6E-09 60.1 8.0 39 36-80 26-64 (214)
132 1xx6_A Thymidine kinase; NESG, 97.6 8.8E-05 3E-09 60.9 6.3 38 36-79 6-43 (191)
133 1ls1_A Signal recognition part 97.6 0.00015 5.2E-09 63.6 8.2 40 37-82 97-136 (295)
134 1l8q_A Chromosomal replication 97.6 0.00021 7.3E-09 63.2 9.3 40 36-81 35-74 (324)
135 3mfy_A V-type ATP synthase alp 97.6 0.00025 8.7E-09 66.7 10.0 128 9-152 200-337 (588)
136 3vr4_D V-type sodium ATPase su 97.6 0.00027 9.3E-09 65.2 9.8 70 8-81 123-192 (465)
137 4f4c_A Multidrug resistance pr 97.6 1.9E-05 6.5E-10 82.8 2.0 57 26-90 1094-1152(1321)
138 1zp6_A Hypothetical protein AT 97.6 4.5E-05 1.5E-09 62.1 3.8 39 34-81 5-43 (191)
139 2j37_W Signal recognition part 97.5 0.00077 2.6E-08 63.5 12.4 39 37-81 100-138 (504)
140 3g5u_A MCG1178, multidrug resi 97.5 6.1E-05 2.1E-09 78.8 5.2 48 26-81 405-452 (1284)
141 3gqb_B V-type ATP synthase bet 97.5 0.00037 1.3E-08 64.3 9.6 55 7-63 118-172 (464)
142 4f4c_A Multidrug resistance pr 97.5 0.00031 1.1E-08 73.7 10.3 151 26-201 433-619 (1321)
143 3vfd_A Spastin; ATPase, microt 97.5 0.00094 3.2E-08 60.8 12.3 37 37-82 147-183 (389)
144 3thx_B DNA mismatch repair pro 97.5 0.00029 9.8E-09 70.9 9.4 29 34-62 669-697 (918)
145 3hu3_A Transitional endoplasmi 97.5 0.00053 1.8E-08 64.5 10.7 117 34-195 234-350 (489)
146 2eyu_A Twitching motility prot 97.5 0.00012 4E-09 63.2 5.7 35 25-62 15-49 (261)
147 1ixz_A ATP-dependent metallopr 97.5 0.00032 1.1E-08 59.8 8.5 27 34-62 47-73 (254)
148 3b9p_A CG5977-PA, isoform A; A 97.5 0.00072 2.4E-08 58.9 10.9 37 36-81 52-88 (297)
149 3ux8_A Excinuclease ABC, A sub 97.5 0.00024 8.1E-09 69.5 8.6 29 26-55 33-61 (670)
150 3thx_A DNA mismatch repair pro 97.5 0.00076 2.6E-08 68.0 12.3 29 34-62 658-686 (934)
151 1znw_A Guanylate kinase, GMP k 97.5 7.1E-05 2.4E-09 62.0 4.0 29 34-62 16-44 (207)
152 1kgd_A CASK, peripheral plasma 97.5 8.6E-05 2.9E-09 60.1 4.2 29 34-62 1-29 (180)
153 1z6g_A Guanylate kinase; struc 97.5 6.7E-05 2.3E-09 62.8 3.6 36 26-62 12-47 (218)
154 3b9q_A Chloroplast SRP recepto 97.5 0.00011 3.8E-09 64.7 5.2 45 35-86 97-141 (302)
155 3d8b_A Fidgetin-like protein 1 97.5 0.00082 2.8E-08 60.5 11.0 37 36-81 115-151 (357)
156 1ypw_A Transitional endoplasmi 97.4 0.00031 1.1E-08 70.1 8.9 29 34-62 234-262 (806)
157 1sxj_E Activator 1 40 kDa subu 97.4 0.00039 1.3E-08 62.2 8.7 22 41-62 39-60 (354)
158 2x8a_A Nuclear valosin-contain 97.4 0.00078 2.7E-08 58.4 10.3 37 34-81 42-78 (274)
159 4eun_A Thermoresistant glucoki 97.4 0.0001 3.4E-09 60.7 4.4 38 35-83 26-63 (200)
160 3gqb_A V-type ATP synthase alp 97.4 0.00038 1.3E-08 65.5 8.7 128 9-152 194-331 (578)
161 1htw_A HI0065; nucleotide-bind 97.4 9.6E-05 3.3E-09 58.7 4.0 30 33-62 28-57 (158)
162 2zan_A Vacuolar protein sortin 97.4 0.00037 1.3E-08 64.8 8.2 41 33-81 162-202 (444)
163 3tr0_A Guanylate kinase, GMP k 97.4 0.00011 3.8E-09 60.3 4.2 28 35-62 4-31 (205)
164 3uie_A Adenylyl-sulfate kinase 97.4 0.00017 5.7E-09 59.3 5.0 52 23-81 11-62 (200)
165 2orv_A Thymidine kinase; TP4A 97.4 0.0018 6.1E-08 54.4 11.2 113 37-199 18-130 (234)
166 2ff7_A Alpha-hemolysin translo 97.4 6.5E-05 2.2E-09 64.3 2.5 48 26-81 24-71 (247)
167 2v9p_A Replication protein E1; 97.4 0.00011 3.7E-09 64.8 3.9 37 25-62 114-150 (305)
168 2z4s_A Chromosomal replication 97.3 0.00048 1.6E-08 63.9 8.3 40 38-81 130-169 (440)
169 1sxj_A Activator 1 95 kDa subu 97.3 0.00051 1.7E-08 65.1 8.6 42 37-87 76-117 (516)
170 2cbz_A Multidrug resistance-as 97.3 6.4E-05 2.2E-09 63.9 2.1 37 25-62 19-55 (237)
171 2o8b_B DNA mismatch repair pro 97.3 0.0018 6.2E-08 66.0 13.1 23 38-60 789-811 (1022)
172 2og2_A Putative signal recogni 97.3 0.00018 6.3E-09 64.8 5.1 45 35-86 154-198 (359)
173 2qen_A Walker-type ATPase; unk 97.3 0.0013 4.4E-08 58.2 10.7 33 38-81 31-63 (350)
174 2pze_A Cystic fibrosis transme 97.3 7.8E-05 2.7E-09 63.0 2.5 37 25-62 22-58 (229)
175 2qby_B CDC6 homolog 3, cell di 97.3 0.00069 2.3E-08 61.1 8.9 98 38-152 45-146 (384)
176 2ixe_A Antigen peptide transpo 97.3 9.1E-05 3.1E-09 64.2 2.8 36 26-62 34-69 (271)
177 3cf2_A TER ATPase, transitiona 97.3 0.00048 1.6E-08 68.3 8.2 30 33-62 506-535 (806)
178 1g5t_A COB(I)alamin adenosyltr 97.3 0.0052 1.8E-07 50.3 13.1 130 38-194 28-162 (196)
179 1rz3_A Hypothetical protein rb 97.3 0.0003 1E-08 57.9 5.8 42 34-81 18-59 (201)
180 3g5u_A MCG1178, multidrug resi 97.3 7.7E-05 2.6E-09 78.1 2.6 49 26-82 1048-1096(1284)
181 2j41_A Guanylate kinase; GMP, 97.3 0.00015 5.3E-09 59.5 4.0 28 35-62 3-30 (207)
182 1knq_A Gluconate kinase; ALFA/ 97.3 0.00017 5.9E-09 57.7 4.0 36 36-82 6-41 (175)
183 2dhr_A FTSH; AAA+ protein, hex 97.3 0.00048 1.6E-08 64.8 7.6 37 34-81 62-98 (499)
184 2xxa_A Signal recognition part 97.3 0.00084 2.9E-08 62.1 9.1 39 38-82 100-139 (433)
185 1s96_A Guanylate kinase, GMP k 97.3 0.00017 5.9E-09 60.5 4.1 29 34-62 12-40 (219)
186 3c8u_A Fructokinase; YP_612366 97.3 0.00014 4.8E-09 60.2 3.4 28 35-62 19-46 (208)
187 2jeo_A Uridine-cytidine kinase 97.3 0.00016 5.5E-09 61.5 3.7 36 25-61 13-48 (245)
188 3asz_A Uridine kinase; cytidin 97.2 0.00024 8.3E-09 58.7 4.6 27 36-62 4-30 (211)
189 3te6_A Regulatory protein SIR3 97.2 0.0032 1.1E-07 55.6 12.1 108 27-152 36-145 (318)
190 1w5s_A Origin recognition comp 97.2 0.00099 3.4E-08 60.6 8.9 100 37-152 49-151 (412)
191 2yvu_A Probable adenylyl-sulfa 97.2 0.00034 1.2E-08 56.6 5.1 48 26-81 3-50 (186)
192 1lvg_A Guanylate kinase, GMP k 97.2 0.00016 5.6E-09 59.5 3.2 27 36-62 2-28 (198)
193 2zu0_C Probable ATP-dependent 97.2 0.00019 6.6E-09 62.0 3.6 35 26-61 35-69 (267)
194 1kag_A SKI, shikimate kinase I 97.2 0.00021 7.2E-09 57.0 3.6 26 37-62 3-28 (173)
195 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00018 6.3E-09 61.5 3.2 35 26-61 18-52 (250)
196 2pez_A Bifunctional 3'-phospho 97.2 0.00038 1.3E-08 55.9 5.0 39 36-80 3-41 (179)
197 3vaa_A Shikimate kinase, SK; s 97.2 0.00027 9.2E-09 58.0 3.9 30 33-62 20-49 (199)
198 3e2i_A Thymidine kinase; Zn-bi 97.2 0.0011 3.7E-08 55.1 7.5 115 35-196 25-139 (219)
199 1ypw_A Transitional endoplasmi 97.2 7.4E-05 2.5E-09 74.6 0.5 125 32-198 505-629 (806)
200 2ghi_A Transport protein; mult 97.1 0.00019 6.6E-09 61.8 3.0 36 26-62 35-70 (260)
201 3tau_A Guanylate kinase, GMP k 97.1 0.00029 9.9E-09 58.4 4.0 27 36-62 6-32 (208)
202 3t61_A Gluconokinase; PSI-biol 97.1 0.001 3.6E-08 54.5 7.4 25 38-62 18-42 (202)
203 2rhm_A Putative kinase; P-loop 97.1 0.00034 1.2E-08 56.7 4.3 29 34-62 1-29 (193)
204 1tue_A Replication protein E1; 97.1 0.00026 9E-09 58.5 3.3 38 24-62 45-82 (212)
205 2qt1_A Nicotinamide riboside k 97.1 0.00035 1.2E-08 57.6 4.1 39 34-82 17-55 (207)
206 1wb9_A DNA mismatch repair pro 97.1 0.0017 5.9E-08 64.5 9.5 27 36-62 605-631 (800)
207 2a5y_B CED-4; apoptosis; HET: 97.1 0.0065 2.2E-07 57.8 13.1 99 37-150 151-254 (549)
208 3b85_A Phosphate starvation-in 97.1 0.00014 4.8E-09 60.5 1.3 27 35-61 19-45 (208)
209 2bdt_A BH3686; alpha-beta prot 97.1 0.00045 1.6E-08 56.0 4.3 23 38-60 2-24 (189)
210 3lnc_A Guanylate kinase, GMP k 97.1 0.00019 6.5E-09 60.4 2.0 28 34-61 23-51 (231)
211 3aez_A Pantothenate kinase; tr 97.0 0.00038 1.3E-08 61.6 4.0 44 35-82 87-130 (312)
212 2ius_A DNA translocase FTSK; n 97.0 0.0043 1.5E-07 58.4 11.0 46 35-82 164-209 (512)
213 1sq5_A Pantothenate kinase; P- 97.0 0.00063 2.2E-08 60.0 5.0 42 36-82 78-120 (308)
214 2bbs_A Cystic fibrosis transme 97.0 0.00035 1.2E-08 61.2 3.1 31 32-62 58-88 (290)
215 2w58_A DNAI, primosome compone 97.0 0.00085 2.9E-08 54.9 5.3 37 39-81 55-91 (202)
216 3a00_A Guanylate kinase, GMP k 97.0 0.00042 1.4E-08 56.2 3.4 25 38-62 1-25 (186)
217 2qor_A Guanylate kinase; phosp 96.9 0.00054 1.9E-08 56.4 3.9 28 35-62 9-36 (204)
218 2ewv_A Twitching motility prot 96.9 0.00064 2.2E-08 61.6 4.6 41 35-80 133-173 (372)
219 3kb2_A SPBC2 prophage-derived 96.9 0.00063 2.2E-08 53.9 3.9 23 40-62 3-25 (173)
220 1d2n_A N-ethylmaleimide-sensit 96.9 0.0044 1.5E-07 53.2 9.3 28 35-62 61-88 (272)
221 3iqw_A Tail-anchored protein t 96.9 0.0065 2.2E-07 54.1 10.5 49 26-82 6-54 (334)
222 1ewq_A DNA mismatch repair pro 96.9 0.0028 9.7E-08 62.6 8.7 25 38-62 576-600 (765)
223 1qhx_A CPT, protein (chloramph 96.8 0.00081 2.8E-08 53.8 4.1 25 38-62 3-27 (178)
224 2pjz_A Hypothetical protein ST 96.8 0.0005 1.7E-08 59.3 2.9 34 26-61 20-53 (263)
225 3umf_A Adenylate kinase; rossm 96.8 0.00075 2.6E-08 56.4 4.0 30 33-62 24-53 (217)
226 4e22_A Cytidylate kinase; P-lo 96.8 0.0008 2.7E-08 57.5 4.2 27 36-62 25-51 (252)
227 3cm0_A Adenylate kinase; ATP-b 96.8 0.00056 1.9E-08 55.1 3.0 26 37-62 3-28 (186)
228 2qm8_A GTPase/ATPase; G protei 96.8 0.0011 3.7E-08 59.3 5.0 47 26-79 44-90 (337)
229 1y63_A LMAJ004144AAA protein; 96.8 0.0013 4.5E-08 53.1 5.1 27 35-61 7-33 (184)
230 1p9r_A General secretion pathw 96.8 0.0012 4.2E-08 60.6 5.4 45 26-79 158-202 (418)
231 2gza_A Type IV secretion syste 96.8 0.00067 2.3E-08 61.2 3.5 41 33-80 170-210 (361)
232 3pvs_A Replication-associated 96.8 0.0077 2.6E-07 55.9 10.8 24 39-62 51-74 (447)
233 4dzz_A Plasmid partitioning pr 96.8 0.0044 1.5E-07 50.5 8.3 38 40-83 3-41 (206)
234 2ze6_A Isopentenyl transferase 96.8 0.00086 2.9E-08 57.4 4.0 23 40-62 3-25 (253)
235 2r8r_A Sensor protein; KDPD, P 96.8 0.003 1E-07 52.9 7.2 41 37-83 4-45 (228)
236 1in4_A RUVB, holliday junction 96.8 0.00032 1.1E-08 62.6 1.2 24 39-62 52-75 (334)
237 3ney_A 55 kDa erythrocyte memb 96.8 0.00097 3.3E-08 54.8 4.0 27 36-62 17-43 (197)
238 1gvn_B Zeta; postsegregational 96.8 0.0011 3.9E-08 57.8 4.7 47 26-81 19-67 (287)
239 1svm_A Large T antigen; AAA+ f 96.8 0.00091 3.1E-08 60.7 4.2 29 33-61 164-192 (377)
240 3trf_A Shikimate kinase, SK; a 96.8 0.00066 2.2E-08 54.7 2.8 25 38-62 5-29 (185)
241 1m7g_A Adenylylsulfate kinase; 96.7 0.0012 4.2E-08 54.5 4.5 41 35-80 22-62 (211)
242 3sr0_A Adenylate kinase; phosp 96.7 0.00098 3.3E-08 55.2 3.8 32 40-82 2-33 (206)
243 3nwj_A ATSK2; P loop, shikimat 96.7 0.00056 1.9E-08 58.5 2.4 39 23-62 31-72 (250)
244 3zq6_A Putative arsenical pump 96.7 0.01 3.4E-07 52.6 10.6 38 39-82 15-52 (324)
245 1via_A Shikimate kinase; struc 96.7 0.00069 2.4E-08 54.2 2.7 31 40-81 6-36 (175)
246 1ye8_A Protein THEP1, hypothet 96.7 0.001 3.6E-08 53.7 3.6 23 40-62 2-24 (178)
247 1kht_A Adenylate kinase; phosp 96.7 0.0011 3.7E-08 53.5 3.8 25 38-62 3-27 (192)
248 2i3b_A HCR-ntpase, human cance 96.7 0.00093 3.2E-08 54.6 3.3 25 38-62 1-25 (189)
249 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0012 4.2E-08 56.6 4.2 39 37-81 3-41 (260)
250 2v3c_C SRP54, signal recogniti 96.7 0.00092 3.1E-08 61.8 3.6 49 27-81 81-136 (432)
251 2c95_A Adenylate kinase 1; tra 96.7 0.0017 5.8E-08 52.6 4.8 27 36-62 7-33 (196)
252 2bbw_A Adenylate kinase 4, AK4 96.7 0.0011 3.8E-08 56.2 3.7 26 37-62 26-51 (246)
253 1ly1_A Polynucleotide kinase; 96.7 0.0011 3.8E-08 52.9 3.5 22 39-60 3-24 (181)
254 3iij_A Coilin-interacting nucl 96.7 0.0016 5.4E-08 52.3 4.4 27 36-62 9-35 (180)
255 1nks_A Adenylate kinase; therm 96.6 0.0021 7.3E-08 51.7 5.2 34 40-79 3-36 (194)
256 2chg_A Replication factor C sm 96.6 0.015 5.1E-07 47.4 10.5 47 41-91 41-87 (226)
257 3u61_B DNA polymerase accessor 96.6 0.031 1.1E-06 49.0 13.1 45 39-93 49-93 (324)
258 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.00078 2.7E-08 60.0 2.6 41 34-81 167-207 (330)
259 1tev_A UMP-CMP kinase; ploop, 96.6 0.0016 5.6E-08 52.5 4.3 25 38-62 3-27 (196)
260 1cke_A CK, MSSA, protein (cyti 96.6 0.0015 5E-08 54.4 4.1 25 38-62 5-29 (227)
261 3p32_A Probable GTPase RV1496/ 96.6 0.012 4.2E-07 52.7 10.4 40 37-82 78-117 (355)
262 1z6t_A APAF-1, apoptotic prote 96.6 0.0012 4.2E-08 63.2 4.0 54 27-83 136-190 (591)
263 3uk6_A RUVB-like 2; hexameric 96.6 0.001 3.5E-08 59.7 3.2 31 32-62 64-94 (368)
264 1oft_A SULA, hypothetical prot 96.6 0.044 1.5E-06 43.1 12.2 140 12-191 17-158 (161)
265 1aky_A Adenylate kinase; ATP:A 96.6 0.0016 5.5E-08 54.1 4.2 26 37-62 3-28 (220)
266 2iyv_A Shikimate kinase, SK; t 96.6 0.00076 2.6E-08 54.3 2.1 24 39-62 3-26 (184)
267 3ug7_A Arsenical pump-driving 96.6 0.017 5.7E-07 51.7 11.0 42 35-82 23-64 (349)
268 1qvr_A CLPB protein; coiled co 96.6 0.0069 2.4E-07 60.8 9.3 25 38-62 191-215 (854)
269 1zd8_A GTP:AMP phosphotransfer 96.6 0.0017 5.8E-08 54.3 4.1 28 35-62 4-31 (227)
270 1iy2_A ATP-dependent metallopr 96.5 0.002 6.7E-08 55.7 4.5 27 34-62 71-97 (278)
271 2plr_A DTMP kinase, probable t 96.5 0.0016 5.6E-08 53.3 3.7 26 37-62 3-28 (213)
272 3lw7_A Adenylate kinase relate 96.5 0.0014 4.9E-08 51.7 3.2 20 39-58 2-21 (179)
273 2bwj_A Adenylate kinase 5; pho 96.5 0.0022 7.4E-08 52.1 4.4 27 36-62 10-36 (199)
274 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0015 5.1E-08 60.9 3.7 29 34-62 134-162 (460)
275 3kta_A Chromosome segregation 96.5 0.0021 7.2E-08 51.6 4.2 28 34-62 23-50 (182)
276 3tqc_A Pantothenate kinase; bi 96.5 0.0028 9.7E-08 56.1 5.1 39 40-82 94-132 (321)
277 3cr8_A Sulfate adenylyltranfer 96.5 0.0012 4.2E-08 62.8 2.9 43 34-81 365-407 (552)
278 1u0j_A DNA replication protein 96.5 0.003 1E-07 54.3 5.1 36 27-62 93-128 (267)
279 4fcw_A Chaperone protein CLPB; 96.4 0.0025 8.6E-08 55.6 4.5 39 38-82 47-85 (311)
280 2wwf_A Thymidilate kinase, put 96.4 0.0025 8.6E-08 52.3 4.1 28 35-62 7-34 (212)
281 1nn5_A Similar to deoxythymidy 96.4 0.0026 8.8E-08 52.3 4.1 27 36-62 7-33 (215)
282 2v54_A DTMP kinase, thymidylat 96.4 0.0027 9.3E-08 51.7 4.1 25 37-61 3-27 (204)
283 3tlx_A Adenylate kinase 2; str 96.3 0.0027 9.1E-08 53.9 4.2 27 36-62 27-53 (243)
284 2cdn_A Adenylate kinase; phosp 96.3 0.0028 9.4E-08 51.8 4.1 26 37-62 19-44 (201)
285 1ukz_A Uridylate kinase; trans 96.3 0.0033 1.1E-07 51.3 4.6 25 38-62 15-39 (203)
286 3n70_A Transport activator; si 96.3 0.0032 1.1E-07 48.8 4.2 27 36-62 22-48 (145)
287 2vp4_A Deoxynucleoside kinase; 96.3 0.0015 5.2E-08 54.8 2.5 27 34-60 16-42 (230)
288 1zuh_A Shikimate kinase; alpha 96.3 0.0016 5.6E-08 51.5 2.5 24 39-62 8-31 (168)
289 1xjc_A MOBB protein homolog; s 96.3 0.0046 1.6E-07 49.5 5.0 37 39-81 5-41 (169)
290 1odf_A YGR205W, hypothetical 3 96.3 0.0026 8.8E-08 55.6 3.8 29 34-62 27-55 (290)
291 2vli_A Antibiotic resistance p 96.3 0.0019 6.6E-08 51.7 2.7 26 37-62 4-29 (183)
292 1qf9_A UMP/CMP kinase, protein 96.3 0.0036 1.2E-07 50.4 4.4 25 38-62 6-30 (194)
293 2oap_1 GSPE-2, type II secreti 96.3 0.0023 8E-08 60.3 3.6 39 35-80 257-295 (511)
294 3r20_A Cytidylate kinase; stru 96.3 0.0027 9.3E-08 53.6 3.6 25 38-62 9-33 (233)
295 3end_A Light-independent proto 96.2 0.0038 1.3E-07 54.6 4.7 60 17-82 15-79 (307)
296 4eaq_A DTMP kinase, thymidylat 96.2 0.0052 1.8E-07 51.6 5.3 29 34-62 22-50 (229)
297 3be4_A Adenylate kinase; malar 96.2 0.0034 1.2E-07 52.1 4.0 26 37-62 4-29 (217)
298 1np6_A Molybdopterin-guanine d 96.2 0.0057 2E-07 49.1 5.1 27 36-62 4-30 (174)
299 1e6c_A Shikimate kinase; phosp 96.2 0.0033 1.1E-07 49.8 3.7 24 39-62 3-26 (173)
300 2p5t_B PEZT; postsegregational 96.2 0.0021 7.1E-08 54.8 2.6 38 35-81 29-66 (253)
301 3zvl_A Bifunctional polynucleo 96.2 0.012 4.2E-07 53.9 8.0 36 36-82 256-291 (416)
302 3d3q_A TRNA delta(2)-isopenten 96.2 0.0048 1.7E-07 54.9 5.0 24 39-62 8-31 (340)
303 2qag_B Septin-6, protein NEDD5 96.2 0.0024 8.2E-08 58.7 3.0 34 27-61 30-65 (427)
304 1jjv_A Dephospho-COA kinase; P 96.2 0.0029 9.8E-08 51.9 3.3 21 40-60 4-24 (206)
305 3a8t_A Adenylate isopentenyltr 96.2 0.0043 1.5E-07 55.2 4.6 27 36-62 38-64 (339)
306 2p67_A LAO/AO transport system 96.2 0.0052 1.8E-07 54.9 5.2 42 35-82 53-94 (341)
307 1ak2_A Adenylate kinase isoenz 96.1 0.004 1.4E-07 52.2 4.1 26 37-62 15-40 (233)
308 1lw7_A Transcriptional regulat 96.1 0.0029 1E-07 57.0 3.4 32 31-62 161-194 (365)
309 2jaq_A Deoxyguanosine kinase; 96.1 0.0036 1.2E-07 50.9 3.6 23 40-62 2-24 (205)
310 3crm_A TRNA delta(2)-isopenten 96.1 0.0052 1.8E-07 54.4 4.9 24 39-62 6-29 (323)
311 1zak_A Adenylate kinase; ATP:A 96.1 0.0035 1.2E-07 52.1 3.6 26 37-62 4-29 (222)
312 1q3t_A Cytidylate kinase; nucl 96.1 0.0045 1.5E-07 52.1 4.3 28 35-62 13-40 (236)
313 2if2_A Dephospho-COA kinase; a 96.1 0.0037 1.3E-07 51.1 3.6 21 40-60 3-23 (204)
314 4ag6_A VIRB4 ATPase, type IV s 96.1 0.0075 2.6E-07 54.8 6.0 40 36-81 33-72 (392)
315 1cp2_A CP2, nitrogenase iron p 96.1 0.0062 2.1E-07 52.0 5.0 37 40-82 3-39 (269)
316 2yv5_A YJEQ protein; hydrolase 96.1 0.0034 1.2E-07 55.1 3.4 32 26-59 155-186 (302)
317 3syl_A Protein CBBX; photosynt 96.1 0.0045 1.5E-07 54.0 4.1 43 36-81 65-108 (309)
318 2pbr_A DTMP kinase, thymidylat 96.0 0.0063 2.2E-07 49.0 4.8 23 40-62 2-24 (195)
319 1sxj_C Activator 1 40 kDa subu 96.0 0.0026 8.9E-08 56.6 2.6 27 36-62 42-70 (340)
320 2bjv_A PSP operon transcriptio 96.0 0.0064 2.2E-07 51.9 5.1 40 37-82 28-67 (265)
321 2iut_A DNA translocase FTSK; n 96.0 0.038 1.3E-06 52.5 10.7 44 37-82 213-256 (574)
322 3fwy_A Light-independent proto 96.0 0.0058 2E-07 53.9 4.7 43 34-82 44-86 (314)
323 2rcn_A Probable GTPase ENGC; Y 96.0 0.0046 1.6E-07 55.6 4.0 27 36-62 213-239 (358)
324 2f1r_A Molybdopterin-guanine d 96.0 0.0025 8.7E-08 51.1 2.1 39 39-81 3-41 (171)
325 1vt4_I APAF-1 related killer D 96.0 0.022 7.6E-07 58.0 9.1 50 37-89 149-198 (1221)
326 2xj4_A MIPZ; replication, cell 95.9 0.012 3.9E-07 51.1 6.3 38 39-82 5-43 (286)
327 3fb4_A Adenylate kinase; psych 95.9 0.0046 1.6E-07 51.0 3.6 23 40-62 2-24 (216)
328 2qmh_A HPR kinase/phosphorylas 95.9 0.0037 1.3E-07 51.3 2.9 26 37-62 33-58 (205)
329 1ex7_A Guanylate kinase; subst 95.9 0.0044 1.5E-07 50.4 3.3 23 40-62 3-25 (186)
330 3euj_A Chromosome partition pr 95.9 0.0041 1.4E-07 58.1 3.4 35 26-62 19-53 (483)
331 1njg_A DNA polymerase III subu 95.9 0.0055 1.9E-07 50.7 3.9 24 39-62 46-69 (250)
332 3dl0_A Adenylate kinase; phosp 95.9 0.0053 1.8E-07 50.7 3.7 23 40-62 2-24 (216)
333 2grj_A Dephospho-COA kinase; T 95.9 0.0044 1.5E-07 50.6 3.2 33 38-81 12-44 (192)
334 3sfz_A APAF-1, apoptotic pepti 95.9 0.016 5.5E-07 59.9 8.1 100 36-150 145-247 (1249)
335 2r62_A Cell division protease 95.9 0.0024 8.3E-08 54.6 1.6 24 39-62 45-68 (268)
336 3ake_A Cytidylate kinase; CMP 95.9 0.0034 1.2E-07 51.3 2.4 23 40-62 4-26 (208)
337 1uf9_A TT1252 protein; P-loop, 95.8 0.0063 2.2E-07 49.4 3.9 23 38-60 8-30 (203)
338 1t9h_A YLOQ, probable GTPase E 95.8 0.0017 5.8E-08 57.2 0.4 28 35-62 170-197 (307)
339 1gtv_A TMK, thymidylate kinase 95.8 0.0029 9.8E-08 52.0 1.7 23 40-62 2-24 (214)
340 2afh_E Nitrogenase iron protei 95.8 0.008 2.7E-07 52.1 4.6 39 39-83 3-41 (289)
341 2c9o_A RUVB-like 1; hexameric 95.8 0.0064 2.2E-07 56.5 4.2 30 33-62 58-87 (456)
342 3m6a_A ATP-dependent protease 95.8 0.0054 1.9E-07 58.3 3.7 26 37-62 107-132 (543)
343 1vht_A Dephospho-COA kinase; s 95.8 0.0067 2.3E-07 50.2 3.8 24 37-60 3-26 (218)
344 2pt5_A Shikimate kinase, SK; a 95.8 0.0068 2.3E-07 47.7 3.7 23 40-62 2-24 (168)
345 2qgz_A Helicase loader, putati 95.8 0.0087 3E-07 52.6 4.7 39 38-81 152-190 (308)
346 2z0h_A DTMP kinase, thymidylat 95.7 0.0065 2.2E-07 49.1 3.6 23 40-62 2-24 (197)
347 3bfv_A CAPA1, CAPB2, membrane 95.7 0.012 4.1E-07 50.7 5.5 42 36-83 80-122 (271)
348 3kjh_A CO dehydrogenase/acetyl 95.7 0.0079 2.7E-07 50.5 4.2 37 41-83 3-39 (254)
349 3cio_A ETK, tyrosine-protein k 95.7 0.012 4.1E-07 51.5 5.5 40 37-82 103-143 (299)
350 3sop_A Neuronal-specific septi 95.7 0.0065 2.2E-07 52.4 3.6 23 40-62 4-26 (270)
351 2www_A Methylmalonic aciduria 95.7 0.011 3.8E-07 52.9 5.3 27 36-62 72-98 (349)
352 3exa_A TRNA delta(2)-isopenten 95.7 0.01 3.5E-07 52.2 4.8 25 38-62 3-27 (322)
353 1pui_A ENGB, probable GTP-bind 95.7 0.0033 1.1E-07 51.4 1.5 33 25-60 16-48 (210)
354 1kao_A RAP2A; GTP-binding prot 95.6 0.27 9.1E-06 37.6 12.6 23 40-62 5-27 (167)
355 2a9k_A RAS-related protein RAL 95.6 0.59 2E-05 36.4 15.0 23 40-62 20-42 (187)
356 1u0l_A Probable GTPase ENGC; p 95.6 0.0042 1.4E-07 54.4 2.1 35 26-62 159-193 (301)
357 3foz_A TRNA delta(2)-isopenten 95.6 0.016 5.4E-07 50.9 5.6 25 38-62 10-34 (316)
358 2iw3_A Elongation factor 3A; a 95.6 0.0058 2E-07 61.7 3.2 33 27-60 451-483 (986)
359 1a7j_A Phosphoribulokinase; tr 95.6 0.0043 1.5E-07 54.1 2.0 40 37-82 4-43 (290)
360 1uj2_A Uridine-cytidine kinase 95.6 0.008 2.7E-07 51.1 3.6 41 39-82 23-65 (252)
361 3ux8_A Excinuclease ABC, A sub 95.6 0.0048 1.6E-07 60.2 2.5 31 27-58 338-368 (670)
362 1sxj_D Activator 1 41 kDa subu 95.6 0.012 4.1E-07 52.1 5.0 22 41-62 61-82 (353)
363 1ofh_A ATP-dependent HSL prote 95.6 0.0078 2.7E-07 52.3 3.6 35 38-81 50-84 (310)
364 1yrb_A ATP(GTP)binding protein 95.6 0.018 6E-07 48.8 5.8 40 36-82 12-51 (262)
365 3hws_A ATP-dependent CLP prote 95.5 0.0082 2.8E-07 53.9 3.8 26 37-62 50-75 (363)
366 2xb4_A Adenylate kinase; ATP-b 95.5 0.0085 2.9E-07 49.9 3.6 23 40-62 2-24 (223)
367 2iw3_A Elongation factor 3A; a 95.5 0.0032 1.1E-07 63.6 1.1 35 27-62 689-723 (986)
368 1sxj_B Activator 1 37 kDa subu 95.5 0.013 4.4E-07 51.1 4.9 46 41-90 45-90 (323)
369 1tq4_A IIGP1, interferon-induc 95.5 0.0051 1.7E-07 56.4 2.2 22 40-61 71-92 (413)
370 2chq_A Replication factor C sm 95.4 0.015 5E-07 50.6 5.0 22 41-62 41-62 (319)
371 3la6_A Tyrosine-protein kinase 95.4 0.02 7E-07 49.7 5.9 41 37-83 91-132 (286)
372 1e4v_A Adenylate kinase; trans 95.4 0.0099 3.4E-07 49.0 3.7 23 40-62 2-24 (214)
373 1ltq_A Polynucleotide kinase; 95.3 0.0092 3.1E-07 51.9 3.3 23 39-61 3-25 (301)
374 1ojl_A Transcriptional regulat 95.3 0.014 4.7E-07 51.2 4.4 47 36-89 23-69 (304)
375 3tqf_A HPR(Ser) kinase; transf 95.3 0.012 4E-07 47.2 3.5 25 37-61 15-39 (181)
376 3k1j_A LON protease, ATP-depen 95.3 0.013 4.5E-07 56.4 4.6 29 34-62 56-84 (604)
377 2gno_A DNA polymerase III, gam 95.3 0.13 4.4E-06 45.0 10.6 57 38-97 18-75 (305)
378 2r2a_A Uncharacterized protein 95.3 0.013 4.5E-07 48.1 3.9 25 38-62 5-29 (199)
379 4edh_A DTMP kinase, thymidylat 95.3 0.02 6.8E-07 47.5 5.1 27 36-62 4-30 (213)
380 1ihu_A Arsenical pump-driving 95.3 0.018 6.3E-07 55.1 5.5 40 37-82 7-46 (589)
381 2fna_A Conserved hypothetical 95.3 0.021 7.3E-07 50.3 5.6 35 39-82 31-65 (357)
382 2f6r_A COA synthase, bifunctio 95.3 0.012 4E-07 51.0 3.7 22 38-59 75-96 (281)
383 1hqc_A RUVB; extended AAA-ATPa 95.2 0.024 8.4E-07 49.5 5.6 26 37-62 37-62 (324)
384 1um8_A ATP-dependent CLP prote 95.2 0.012 4.2E-07 52.9 3.8 36 37-81 71-106 (376)
385 2h92_A Cytidylate kinase; ross 95.2 0.01 3.6E-07 48.9 3.0 25 38-62 3-27 (219)
386 1a5t_A Delta prime, HOLB; zinc 95.2 0.12 4.1E-06 45.6 10.1 60 38-97 24-101 (334)
387 2oze_A ORF delta'; para, walke 95.2 0.017 5.8E-07 50.1 4.4 41 37-83 33-76 (298)
388 1f2t_A RAD50 ABC-ATPase; DNA d 95.2 0.013 4.5E-07 45.6 3.3 23 39-61 24-46 (149)
389 1oix_A RAS-related protein RAB 95.1 0.014 4.8E-07 47.1 3.6 23 40-62 31-53 (191)
390 2bov_A RAla, RAS-related prote 95.1 0.36 1.2E-05 38.5 12.3 23 40-62 16-38 (206)
391 3clv_A RAB5 protein, putative; 95.1 0.17 5.9E-06 40.2 10.2 23 40-62 9-31 (208)
392 3co5_A Putative two-component 95.1 0.0055 1.9E-07 47.3 1.0 24 37-60 26-49 (143)
393 3ea0_A ATPase, para family; al 95.1 0.027 9.3E-07 47.1 5.4 41 37-83 3-45 (245)
394 2va8_A SSO2462, SKI2-type heli 95.1 0.082 2.8E-06 51.8 9.6 51 25-80 33-83 (715)
395 3pfi_A Holliday junction ATP-d 95.1 0.014 4.8E-07 51.6 3.7 24 39-62 56-79 (338)
396 2ga8_A Hypothetical 39.9 kDa p 95.1 0.014 4.9E-07 52.2 3.7 28 35-62 19-48 (359)
397 3fkq_A NTRC-like two-domain pr 95.1 0.019 6.6E-07 51.8 4.7 40 36-81 141-181 (373)
398 3igf_A ALL4481 protein; two-do 95.1 0.029 1E-06 50.6 5.8 36 39-80 3-38 (374)
399 1w1w_A Structural maintenance 95.0 0.017 5.7E-07 53.2 4.2 28 35-62 23-50 (430)
400 3qf7_A RAD50; ABC-ATPase, ATPa 95.0 0.014 4.8E-07 52.6 3.6 26 35-61 21-46 (365)
401 1u8z_A RAS-related protein RAL 95.0 0.5 1.7E-05 36.0 12.3 23 40-62 6-28 (168)
402 1hyq_A MIND, cell division inh 95.0 0.025 8.5E-07 48.0 4.9 37 40-82 4-41 (263)
403 4b3f_X DNA-binding protein smu 94.9 0.023 7.7E-07 55.2 5.1 37 37-79 204-240 (646)
404 3eph_A TRNA isopentenyltransfe 94.9 0.026 9E-07 51.3 5.2 24 39-62 3-26 (409)
405 2f9l_A RAB11B, member RAS onco 94.9 0.015 5E-07 47.2 3.2 22 40-61 7-28 (199)
406 2o5v_A DNA replication and rep 94.9 0.015 5.1E-07 52.3 3.5 26 34-60 23-48 (359)
407 2r44_A Uncharacterized protein 94.9 0.011 3.8E-07 52.1 2.6 25 38-62 46-70 (331)
408 2woo_A ATPase GET3; tail-ancho 94.9 0.033 1.1E-06 49.3 5.7 41 37-83 18-58 (329)
409 4aby_A DNA repair protein RECN 94.9 0.0072 2.4E-07 55.2 1.4 35 26-62 50-84 (415)
410 1nij_A Hypothetical protein YJ 94.9 0.011 3.9E-07 52.1 2.6 23 39-61 5-27 (318)
411 1wcv_1 SOJ, segregation protei 94.9 0.019 6.4E-07 48.8 3.9 40 37-82 5-45 (257)
412 1vec_A ATP-dependent RNA helic 94.9 0.47 1.6E-05 38.1 12.3 39 38-79 40-78 (206)
413 2gj8_A MNME, tRNA modification 94.9 0.018 6.1E-07 45.6 3.4 25 37-61 3-27 (172)
414 2ocp_A DGK, deoxyguanosine kin 94.8 0.022 7.5E-07 47.9 4.0 26 37-62 1-26 (241)
415 1g3q_A MIND ATPase, cell divis 94.7 0.026 8.8E-07 47.0 4.3 38 39-82 3-41 (237)
416 2gxq_A Heat resistant RNA depe 94.7 0.28 9.7E-06 39.5 10.6 42 38-79 38-79 (207)
417 2ph1_A Nucleotide-binding prot 94.7 0.026 9E-07 48.1 4.4 41 38-84 18-59 (262)
418 1ihu_A Arsenical pump-driving 94.7 0.022 7.6E-07 54.6 4.3 52 25-82 313-365 (589)
419 3lv8_A DTMP kinase, thymidylat 94.7 0.035 1.2E-06 46.8 5.0 29 34-62 23-51 (236)
420 3v9p_A DTMP kinase, thymidylat 94.7 0.017 6E-07 48.4 3.0 30 33-62 20-49 (227)
421 1g41_A Heat shock protein HSLU 94.6 0.027 9.3E-07 52.0 4.5 23 40-62 52-74 (444)
422 1e69_A Chromosome segregation 94.6 0.015 5E-07 51.4 2.6 25 35-60 22-46 (322)
423 2wji_A Ferrous iron transport 94.5 0.021 7.2E-07 44.7 3.0 22 40-61 5-26 (165)
424 1jr3_A DNA polymerase III subu 94.5 0.026 8.8E-07 50.3 4.0 24 39-62 39-62 (373)
425 3q9l_A Septum site-determining 94.5 0.032 1.1E-06 47.1 4.3 38 39-82 3-41 (260)
426 3tmk_A Thymidylate kinase; pho 94.4 0.033 1.1E-06 46.3 4.1 27 36-62 3-29 (216)
427 1iqp_A RFCS; clamp loader, ext 94.4 0.024 8.1E-07 49.5 3.4 23 40-62 48-70 (327)
428 1g8p_A Magnesium-chelatase 38 94.4 0.012 4.2E-07 52.0 1.5 23 40-62 47-69 (350)
429 3e1s_A Exodeoxyribonuclease V, 94.4 0.04 1.4E-06 52.7 5.1 38 37-80 203-240 (574)
430 3t1o_A Gliding protein MGLA; G 94.3 0.26 8.7E-06 39.0 9.3 21 40-60 16-36 (198)
431 2zej_A Dardarin, leucine-rich 94.3 0.02 6.8E-07 45.7 2.5 21 40-60 4-24 (184)
432 2p6r_A Afuhel308 helicase; pro 94.3 0.11 3.8E-06 50.7 8.3 38 37-80 39-76 (702)
433 4tmk_A Protein (thymidylate ki 94.3 0.035 1.2E-06 46.0 4.0 26 37-62 2-27 (213)
434 1ni3_A YCHF GTPase, YCHF GTP-b 94.3 0.036 1.2E-06 50.4 4.4 30 32-61 14-43 (392)
435 1byi_A Dethiobiotin synthase; 94.3 0.04 1.4E-06 45.5 4.4 34 40-79 3-37 (224)
436 1e9r_A Conjugal transfer prote 94.3 0.039 1.3E-06 50.7 4.8 39 38-82 53-91 (437)
437 4eq6_A Chromosome segregation 94.3 0.54 1.8E-05 37.8 10.5 127 50-185 17-155 (214)
438 2ygr_A Uvrabc system protein A 94.3 0.013 4.5E-07 59.1 1.6 27 33-59 663-689 (993)
439 2wsm_A Hydrogenase expression/ 94.2 0.033 1.1E-06 45.8 3.8 38 38-82 30-67 (221)
440 2zj8_A DNA helicase, putative 94.2 0.095 3.2E-06 51.4 7.6 52 28-84 29-80 (720)
441 3gmt_A Adenylate kinase; ssgci 94.2 0.032 1.1E-06 46.8 3.6 23 40-62 10-32 (230)
442 1z2a_A RAS-related protein RAB 94.1 0.028 9.7E-07 43.5 3.0 23 40-62 7-29 (168)
443 3qks_A DNA double-strand break 94.1 0.032 1.1E-06 45.7 3.4 23 39-61 24-46 (203)
444 2dyk_A GTP-binding protein; GT 94.1 0.03 1E-06 43.1 3.1 22 40-61 3-24 (161)
445 2hf9_A Probable hydrogenase ni 94.1 0.035 1.2E-06 45.7 3.7 25 38-62 38-62 (226)
446 3ld9_A DTMP kinase, thymidylat 94.0 0.039 1.3E-06 46.1 3.8 27 36-62 19-45 (223)
447 3nbx_X ATPase RAVA; AAA+ ATPas 94.0 0.022 7.6E-07 53.5 2.5 28 35-62 38-65 (500)
448 4hlc_A DTMP kinase, thymidylat 94.0 0.062 2.1E-06 44.2 5.0 35 38-79 2-36 (205)
449 2wjg_A FEOB, ferrous iron tran 94.0 0.03 1E-06 44.5 3.0 22 40-61 9-30 (188)
450 2ce2_X GTPase HRAS; signaling 94.0 0.035 1.2E-06 42.7 3.3 22 41-62 6-27 (166)
451 1qde_A EIF4A, translation init 94.0 0.36 1.2E-05 39.4 9.8 41 37-80 50-90 (224)
452 3pxi_A Negative regulator of g 94.0 0.053 1.8E-06 53.6 5.3 23 40-62 523-545 (758)
453 2woj_A ATPase GET3; tail-ancho 94.0 0.081 2.8E-06 47.3 6.0 53 25-83 7-59 (354)
454 2r6f_A Excinuclease ABC subuni 93.9 0.012 4.2E-07 59.2 0.5 26 34-59 646-671 (972)
455 2vf7_A UVRA2, excinuclease ABC 93.9 0.018 6.1E-07 57.4 1.7 27 33-59 518-545 (842)
456 1m8p_A Sulfate adenylyltransfe 93.9 0.032 1.1E-06 53.4 3.4 40 37-81 395-434 (573)
457 1p5z_B DCK, deoxycytidine kina 93.9 0.018 6.2E-07 49.1 1.5 26 36-61 22-47 (263)
458 1x6v_B Bifunctional 3'-phospho 93.9 0.047 1.6E-06 52.6 4.5 26 37-62 51-76 (630)
459 2axn_A 6-phosphofructo-2-kinas 93.9 0.043 1.5E-06 51.8 4.2 26 37-62 34-59 (520)
460 3pih_A Uvrabc system protein A 93.8 0.024 8.3E-07 57.0 2.4 24 33-56 605-628 (916)
461 2nzj_A GTP-binding protein REM 93.8 0.037 1.3E-06 43.2 3.1 22 40-61 6-27 (175)
462 1g16_A RAS-related protein SEC 93.8 0.038 1.3E-06 42.9 3.1 22 41-62 6-27 (170)
463 2ged_A SR-beta, signal recogni 93.8 0.039 1.3E-06 44.1 3.3 27 36-62 46-72 (193)
464 1qhl_A Protein (cell division 93.7 0.0051 1.7E-07 51.7 -2.2 24 39-62 28-51 (227)
465 3llm_A ATP-dependent RNA helic 93.7 0.048 1.7E-06 45.5 3.9 45 36-81 74-118 (235)
466 2gks_A Bifunctional SAT/APS ki 93.7 0.033 1.1E-06 52.9 3.1 39 37-81 371-409 (546)
467 3q85_A GTP-binding protein REM 93.7 0.038 1.3E-06 42.9 3.0 19 41-59 5-23 (169)
468 1ek0_A Protein (GTP-binding pr 93.7 0.041 1.4E-06 42.6 3.2 22 41-62 6-27 (170)
469 3io3_A DEHA2D07832P; chaperone 93.7 0.095 3.3E-06 46.8 6.0 51 26-82 8-58 (348)
470 2erx_A GTP-binding protein DI- 93.7 0.039 1.3E-06 42.8 3.1 22 40-61 5-26 (172)
471 1s2m_A Putative ATP-dependent 93.7 0.69 2.4E-05 41.2 11.8 39 38-79 58-96 (400)
472 1ky3_A GTP-binding protein YPT 93.7 0.04 1.4E-06 43.3 3.1 23 40-62 10-32 (182)
473 1z08_A RAS-related protein RAB 93.7 0.043 1.5E-06 42.6 3.3 23 40-62 8-30 (170)
474 1t6n_A Probable ATP-dependent 93.6 1 3.5E-05 36.6 11.9 40 38-80 51-90 (220)
475 1wms_A RAB-9, RAB9, RAS-relate 93.6 0.04 1.4E-06 43.2 3.1 23 40-62 9-31 (177)
476 1z0j_A RAB-22, RAS-related pro 93.6 0.045 1.5E-06 42.4 3.3 23 40-62 8-30 (170)
477 1r8s_A ADP-ribosylation factor 93.6 0.048 1.6E-06 42.1 3.4 22 41-62 3-24 (164)
478 1g8f_A Sulfate adenylyltransfe 93.5 0.055 1.9E-06 50.9 4.3 42 36-82 393-435 (511)
479 3pxg_A Negative regulator of g 93.5 0.043 1.5E-06 51.1 3.5 26 37-62 200-225 (468)
480 1c1y_A RAS-related protein RAP 93.5 0.043 1.5E-06 42.4 3.0 22 41-62 6-27 (167)
481 1nrj_B SR-beta, signal recogni 93.5 0.045 1.5E-06 44.8 3.2 24 39-62 13-36 (218)
482 1hv8_A Putative ATP-dependent 93.5 0.74 2.5E-05 40.2 11.5 38 39-80 45-82 (367)
483 3q72_A GTP-binding protein RAD 93.5 0.043 1.5E-06 42.5 3.0 19 41-59 5-23 (166)
484 1r2q_A RAS-related protein RAB 93.4 0.049 1.7E-06 42.2 3.2 23 40-62 8-30 (170)
485 2y8e_A RAB-protein 6, GH09086P 93.4 0.048 1.6E-06 42.7 3.1 23 40-62 16-38 (179)
486 1ko7_A HPR kinase/phosphatase; 93.4 0.052 1.8E-06 47.7 3.6 25 37-61 143-167 (314)
487 2fn4_A P23, RAS-related protei 93.4 0.053 1.8E-06 42.5 3.4 23 40-62 11-33 (181)
488 3cwq_A Para family chromosome 93.4 0.085 2.9E-06 43.3 4.7 36 42-84 5-40 (209)
489 2hxs_A RAB-26, RAS-related pro 93.4 0.048 1.6E-06 42.7 3.1 22 40-61 8-29 (178)
490 3qkt_A DNA double-strand break 93.3 0.049 1.7E-06 48.3 3.4 23 39-61 24-46 (339)
491 3con_A GTPase NRAS; structural 93.3 0.05 1.7E-06 43.3 3.2 23 40-62 23-45 (190)
492 1upt_A ARL1, ADP-ribosylation 93.3 0.053 1.8E-06 42.1 3.2 26 37-62 6-31 (171)
493 1udx_A The GTP-binding protein 93.2 0.025 8.4E-07 51.9 1.4 28 34-61 153-180 (416)
494 3fdi_A Uncharacterized protein 93.2 0.057 2E-06 44.2 3.5 25 38-62 6-30 (201)
495 2lkc_A Translation initiation 93.2 0.068 2.3E-06 41.8 3.8 25 37-61 7-31 (178)
496 1svi_A GTP-binding protein YSX 93.2 0.048 1.6E-06 43.6 2.9 23 39-61 24-46 (195)
497 2cxx_A Probable GTP-binding pr 93.2 0.048 1.6E-06 43.2 2.9 21 41-61 4-24 (190)
498 2qnr_A Septin-2, protein NEDD5 93.2 0.041 1.4E-06 48.1 2.7 21 41-61 21-41 (301)
499 3upu_A ATP-dependent DNA helic 93.2 0.052 1.8E-06 50.3 3.5 24 40-63 47-70 (459)
500 3bor_A Human initiation factor 93.2 0.41 1.4E-05 39.7 8.8 40 37-79 66-105 (237)
No 1
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=100.00 E-value=3.1e-38 Score=286.80 Aligned_cols=248 Identities=25% Similarity=0.383 Sum_probs=193.0
Q ss_pred cccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH
Q 022155 10 LLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL 89 (302)
Q Consensus 10 l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl 89 (302)
+++.+.....++||++.||.+|+||+++|++++|+||||+|||+||++++.+++++...||...+|+||++|.+|+++++
T Consensus 94 ~~~~~~~~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l 173 (343)
T 1v5w_A 94 YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRL 173 (343)
T ss_dssp HHHHGGGCCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHH
T ss_pred HHhhhcccceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH
Confidence 44555567899999999999999999999999999999999999999999998776554444559999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCC-CCeeEEEEechhhhhhhccCCChhhHHHHHH
Q 022155 90 HQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSR-LPIRLIVIDSIAALFRSDFDNTMDDLKKRSF 168 (302)
Q Consensus 90 ~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~-~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~ 168 (302)
.+++..+.. ..+..++++++.++.+.+++.+++..+..++.+ . .++++|||||++++++.++.+. +++..|++
T Consensus 174 ~~~~~~~g~-~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~----~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~ 247 (343)
T 1v5w_A 174 RDIADRFNV-DHDAVLDNVLYARAYTSEHQMELLDYVAAKFHE----EAGIFKLLIIDSIMALFRVDFSGR-GELAERQQ 247 (343)
T ss_dssp HHHHHHTTC-CHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHH----SCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHH
T ss_pred HHHHHHcCC-CHHHHHhceeEeecCCHHHHHHHHHHHHHHHHh----cCCCccEEEEechHHHHHHHhccc-ccHHHHHH
Confidence 888876542 222345788888888888887888777777753 2 5789999999999997765432 24566777
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchh
Q 022155 169 LFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVV 248 (302)
Q Consensus 169 ~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~ 248 (302)
.+.++++.|+.++++++++||++||+.+...... ++. +...+|++|..|.|.+++||+|+|.+.
T Consensus 248 ~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~------------~~~-g~~~~~~gg~~i~~~ad~~l~l~r~~~--- 311 (343)
T 1v5w_A 248 KLAQMLSRLQKISEEYNVAVFVTNQMTADPGATM------------TFQ-ADPKKPIGGHILAHASTTRISLRKGRG--- 311 (343)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECC--------------------------------CCTTTTSSSEEEEEEESST---
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEeeceecCCCcc------------ccC-CCCCcCCchHHHHHhCCEEEEEEEcCC---
Confidence 7899999999999999999999999987654310 110 134689999999999999999998532
Q ss_pred cccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccccC
Q 022155 249 RENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301 (302)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~~ 301 (302)
..|.++|.|+|+.|...+.|.|++.||++++
T Consensus 312 ----------------------~~r~~~v~K~r~~p~~~~~f~I~~~Gi~~~~ 342 (343)
T 1v5w_A 312 ----------------------ELRIAKIYDSPEMPENEATFAITAGGIGDAK 342 (343)
T ss_dssp ----------------------TEEEEEEEECTTCCSSCEEEEEETTEEEECC
T ss_pred ----------------------CEEEEEEEECCCCCCeeEEEEEeCCCccCCC
Confidence 4789999999999988999999999999886
No 2
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=100.00 E-value=6.3e-38 Score=282.80 Aligned_cols=245 Identities=30% Similarity=0.496 Sum_probs=184.3
Q ss_pred cccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH
Q 022155 10 LLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL 89 (302)
Q Consensus 10 l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl 89 (302)
+++.+.....++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+...|+...+|+||++|.+|+++++
T Consensus 79 ~~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l 158 (324)
T 2z43_A 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERI 158 (324)
T ss_dssp HHHHHCSCCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH
T ss_pred hhhhhccCCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH
Confidence 44445567899999999999999999999999999999999999999999998765445555569999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHH
Q 022155 90 HQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFL 169 (302)
Q Consensus 90 ~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~ 169 (302)
.+++..+.. ..+..++++++.++.+.+++.+++..+..++.+ ..++++|||||+++++..++.+. +++..|++.
T Consensus 159 ~~~~~~~g~-~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~ 232 (324)
T 2z43_A 159 ENMAKALGL-DIDNVMNNIYYIRAINTDHQIAIVDDLQELVSK----DPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQK 232 (324)
T ss_dssp HHHHHHTTC-CHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHH----CTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHH
T ss_pred HHHHHHhCC-CHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHh----ccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHH
Confidence 888776532 222344688888888888877788888777753 25789999999999987665432 244567677
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhc
Q 022155 170 FFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVR 249 (302)
Q Consensus 170 l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~ 249 (302)
+.++++.|+.++++++++||++||+....... + +....|++|..|.|.+++||+|+|...
T Consensus 233 ~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~--------------~--~~~~~~~gg~~l~~~~d~~l~l~r~~~---- 292 (324)
T 2z43_A 233 LNKHLHQLTRLAEVYDIAVIITNQVMARPDMF--------------Y--GDPTVAVGGHTLYHVPGIRIQLKKSRG---- 292 (324)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEC----------------------------------------CEEEEEEECST----
T ss_pred HHHHHHHHHHHHHHhCCEEEEEcceeecCCCc--------------C--CCCCCCCchHHHHhhCcEEEEEEEcCC----
Confidence 89999999999999999999999998765432 1 134679999999999999999998532
Q ss_pred ccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccccC
Q 022155 250 ENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301 (302)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~~ 301 (302)
..|.+++.|+|+.|...+.|.|++.||++++
T Consensus 293 ---------------------~~r~~~v~k~~~~p~~~~~f~I~~~Gi~~~~ 323 (324)
T 2z43_A 293 ---------------------NRRIARVVDAPHLPEGEVVFALTEEGIRDAE 323 (324)
T ss_dssp ---------------------TEEEEEEEECSSSCCEEEEEEEETTEEECCC
T ss_pred ---------------------CeEEEEEEECCCCCceEEEEEEeCCCcccCC
Confidence 3789999999999988999999999999986
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=100.00 E-value=1.2e-37 Score=280.93 Aligned_cols=244 Identities=29% Similarity=0.403 Sum_probs=197.0
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCC---------cCCCCC-CeEEEE
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPS---------SHGGLS-ASSLYL 78 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~---------~~gg~~-~~vlyi 78 (302)
++++.+.....++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++++. ..||.. .+|+||
T Consensus 69 ~~~~~~~~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi 148 (322)
T 2i1q_A 69 DLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYI 148 (322)
T ss_dssp HHHHHHTTCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEE
T ss_pred HHHHHhccCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEE
Confidence 4555556688999999999999999999999999999999999999999999876653 345333 599999
Q ss_pred eCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCC
Q 022155 79 HTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDN 158 (302)
Q Consensus 79 d~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~ 158 (302)
++|.+|+++|+.+++..+.. ..+..++++++.++.+.+++.+++..+..++.+ ..++++|||||++.+++.++.+
T Consensus 149 ~~e~~~~~~~l~~~~~~~g~-~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~lvVIDsl~~l~~~~~~~ 223 (322)
T 2i1q_A 149 DTEGTFRPERIMQMAEHAGI-DGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQE----GNNIKLVVIDSLTSTFRNEYTG 223 (322)
T ss_dssp ESSSCCCHHHHHHHHHHHTC-CHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHT----TCEEEEEEEECSSHHHHHHCCC
T ss_pred ECCCCCCHHHHHHHHHHcCC-CHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhh----ccCccEEEEECcHHHHHHHhcC
Confidence 99999999999888776542 222344688999988988887788888777753 2578999999999998766543
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEE
Q 022155 159 TMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRL 238 (302)
Q Consensus 159 ~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl 238 (302)
. +++..|++.+.++++.|+.++++++++||++||+....... + +....|++|..|.|.+++||
T Consensus 224 ~-~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~--------------~--g~~~~~~g~~~~~~~~d~~i 286 (322)
T 2i1q_A 224 R-GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAF--------------F--GMAEQAIGGHIVGHAATFRF 286 (322)
T ss_dssp T-TSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-----------------------CCEESSHHHHHHHCSEEE
T ss_pred C-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCC--------------C--CCCcCCCCcHHHHhcCcEEE
Confidence 2 24456777789999999999999999999999998765432 1 13468999999999999999
Q ss_pred EEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccc
Q 022155 239 FLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFG 299 (302)
Q Consensus 239 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~ 299 (302)
.|+|... ..|.+++.|+|+.|...+.|.|+++||+|
T Consensus 287 ~l~~~~~-------------------------~~r~~~v~k~~~~p~~~~~f~I~~~Gi~~ 322 (322)
T 2i1q_A 287 FVRKGKG-------------------------DKRVAKLYDSPHLPDAEAIFRITEKGIQD 322 (322)
T ss_dssp EEEECST-------------------------TEEEEEEEECSSSCCEEEEEEEETTEEEC
T ss_pred EEEecCC-------------------------CeEEEEEEECCCCCCeEEEEEEeCCCcCC
Confidence 9988542 36899999999999889999999999986
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=100.00 E-value=1.8e-37 Score=285.69 Aligned_cols=249 Identities=29% Similarity=0.440 Sum_probs=192.8
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR 87 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~ 87 (302)
.++++.+....+++||++.||++|+|||++|++++|+||||+||||||++++.+.++|...|+...+++||+++..++..
T Consensus 148 ~~l~~~~~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~ 227 (400)
T 3lda_A 148 ADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPV 227 (400)
T ss_dssp HHHHHHHHTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH
T ss_pred HHHHhhhccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHH
Confidence 34666667789999999999999999999999999999999999999999998887776666556699999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHH
Q 022155 88 RLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRS 167 (302)
Q Consensus 88 rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~ 167 (302)
++.+++..+.. .++.+++++.+....+.++..+.+..+...+.. .++++||||++++++..++.+. +++.+|+
T Consensus 228 rl~~~a~~~gl-~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~-----~~~~llVIDs~t~~~~~~~sg~-g~l~~Rq 300 (400)
T 3lda_A 228 RLVSIAQRFGL-DPDDALNNVAYARAYNADHQLRLLDAAAQMMSE-----SRFSLIVVDSVMALYRTDFSGR-GELSARQ 300 (400)
T ss_dssp HHHHHHHHTTC-CHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHH-----SCEEEEEEETGGGGCC-------CCHHHHH
T ss_pred HHHHHHHHcCC-ChHhHhhcEEEeccCChHHHHHHHHHHHHHHHh-----cCCceEEecchhhhCchhhcCc-cchHHHH
Confidence 99888877542 222456788998888887777777777777765 4689999999999988776642 3567788
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCch
Q 022155 168 FLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFV 247 (302)
Q Consensus 168 ~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~ 247 (302)
+.+.++++.|++++++++++||++||+.+..+... ++. +...+|++|..|+|++++||+|++...
T Consensus 301 ~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~------------~~~-g~~~~p~gg~~l~~~ad~vl~L~~~~g-- 365 (400)
T 3lda_A 301 MHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGM------------AFN-PDPKKPIGGNIMAYSSTTRLGFKKGKG-- 365 (400)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEEC---------------------------------CHHHHHCSEEEEEEECST--
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccc------------ccc-CCCccCCchhHHHHhcceEEEEEecCC--
Confidence 88899999999999999999999999976554310 111 134679999999999999999998533
Q ss_pred hcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccccC
Q 022155 248 VRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVE 301 (302)
Q Consensus 248 ~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~~ 301 (302)
..|.++|+|+|+.|...+.|.|++.||++++
T Consensus 366 -----------------------~~R~l~v~K~R~~p~~e~~F~It~~Gi~~~~ 396 (400)
T 3lda_A 366 -----------------------CQRLCKVVDSPCLPEAECVFAIYEDGVGDPR 396 (400)
T ss_dssp -----------------------TEEEEEEEECSSSCSCEEEEEEETTEEECCC
T ss_pred -----------------------CcEEEEEEcCCCCCCCceEEEEeCCcccccc
Confidence 3699999999999988899999999999986
No 5
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=100.00 E-value=5.1e-36 Score=272.52 Aligned_cols=248 Identities=29% Similarity=0.470 Sum_probs=190.2
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHH
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRR 88 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~r 88 (302)
++++.+....+++||++.||.+|+||+++|++++|+|||||||||||++++..++.++..|+..++|+||+++..+..++
T Consensus 102 ~~~~~~~~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 102 EYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp HHHHHHHTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred HHHhhhccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 45565666889999999999999999999999999999999999999999999865555654455899999999888888
Q ss_pred HHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHH
Q 022155 89 LHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSF 168 (302)
Q Consensus 89 l~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~ 168 (302)
+..+.+.+.. ....+++|+.+....+.....+++..+..++.+.+....++++|||||+++++..++.+. +++.+|++
T Consensus 182 i~~i~q~~~~-~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~-~~~~~r~~ 259 (349)
T 1pzn_A 182 IREIAQNRGL-DPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR-GALAERQQ 259 (349)
T ss_dssp HHHHHHTTTC-CHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST-TTHHHHHH
T ss_pred HHHHHHHcCC-CHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc-ccHHHHHH
Confidence 8888876532 223567888888776666666666666666653111114689999999999987665433 24567777
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchh
Q 022155 169 LFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVV 248 (302)
Q Consensus 169 ~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~ 248 (302)
.+.++++.|++++++++++||++||+....... + +....|++|..|+|++++||+|++...
T Consensus 260 ~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~--------------~--~~~~~~~~G~~l~~~~~~rL~l~~~~~--- 320 (349)
T 1pzn_A 260 KLAKHLADLHRLANLYDIAVFVTNQVQARPDAF--------------F--GDPTRPIGGHILAHSATLRVYLRKGKG--- 320 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECC-------------------------------CCCCCTTCSEEEEEEECTT---
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEcccccccccc--------------c--CCccccCCcceEeecCcEEEEEEEcCC---
Confidence 788999999999999999999999997654321 1 134679999999999999999988432
Q ss_pred cccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccc
Q 022155 249 RENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFG 299 (302)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~ 299 (302)
..|.+++.|+|+.|...+.|.|++.||+|
T Consensus 321 ----------------------~~Ri~k~~ks~~~~~~~~~f~It~~Gi~d 349 (349)
T 1pzn_A 321 ----------------------GKRIARLIDAPHLPEGEAVFSITEKGIED 349 (349)
T ss_dssp ----------------------SEEEEEESCSSSSCCSEEEEEEETTEEEC
T ss_pred ----------------------CeEEEEEEeCCCCCCeEEEEEEcCCCCCC
Confidence 47999999999999888999999999986
No 6
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=100.00 E-value=7.1e-34 Score=245.25 Aligned_cols=242 Identities=27% Similarity=0.456 Sum_probs=172.4
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHT 95 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~ 95 (302)
..++++||++.||++|+||+++|++++|+||||+|||||+++++.+++++...|+...+++|++++..++.+++.++...
T Consensus 2 ~~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (243)
T 1n0w_A 2 EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER 81 (243)
T ss_dssp CCCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH
T ss_pred CceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999987655433333458999999998888888777665
Q ss_pred hCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHH
Q 022155 96 FRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISG 175 (302)
Q Consensus 96 ~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~ 175 (302)
+.. .++..++++.+....+..++.+.+..+.+.+.. .++++||||+++.++..++++. ++..+|++.+..++.
T Consensus 82 ~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~lliiD~~~~~~~~~~~~~-~~~~~r~~~~~~~~~ 154 (243)
T 1n0w_A 82 YGL-SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVE-----SRYALLIVDSATALYRTDYSGR-GELSARQMHLARFLR 154 (243)
T ss_dssp TTC-CHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHH-----SCEEEEEEETSSGGGC--------CHHHHHHHHHHHHH
T ss_pred cCC-CHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhc-----CCceEEEEeCchHHHHHHhcCC-ccHHHHHHHHHHHHH
Confidence 432 222244678888888877777777777777764 5679999999999886554432 123455556788999
Q ss_pred HHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhccccccc
Q 022155 176 MLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVN 255 (302)
Q Consensus 176 ~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~ 255 (302)
.|++++++++++||++||..+...... .++ +....|++|..|.+.++.+++|.+...
T Consensus 155 ~l~~~~~~~~~tvi~~~h~~~~~~~~~------------~~~-~~~~~~~g~~~~~~~~d~vi~l~~~~~---------- 211 (243)
T 1n0w_A 155 MLLRLADEFGVAVVITNQVVAQVDGAA------------MFA-ADPKKPIGGNIIAHASTTRLYLRKGRG---------- 211 (243)
T ss_dssp HHHHHHHHHCCEEEEEC--------------------------------------CCTTCEEEEEEECST----------
T ss_pred HHHHHHHHcCCEEEEEeeeeecCCCcc------------ccC-CCcccCCccChhhhcCcEEEEEEEcCC----------
Confidence 999999999999999999876554210 010 134678999999999999999998422
Q ss_pred CCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccccCC
Q 022155 256 GGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGVER 302 (302)
Q Consensus 256 g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~~~~ 302 (302)
..|.++|.|+++.|...+.|.|++.||++++.
T Consensus 212 ---------------~~r~l~v~K~r~~~~~~~~f~I~~~Gi~~~~~ 243 (243)
T 1n0w_A 212 ---------------ETRICKIYDSPCLPEAEAMFAINADGVGDAKD 243 (243)
T ss_dssp ---------------TEEEEEECCBTTBSCEEEEEEEETTEEECCCC
T ss_pred ---------------CeEEEEEEECCCCCCCeEEEEEeCCccccCCC
Confidence 47899999999998878999999999999863
No 7
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=100.00 E-value=8e-33 Score=250.50 Aligned_cols=229 Identities=23% Similarity=0.294 Sum_probs=178.7
Q ss_pred CCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHH
Q 022155 17 TEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHT 95 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~ 95 (302)
..++|||++.||.+|+ ||+++|++++|+||||+||||||++++..++ ..|+ +|+||+++..++..|.+++..
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~---~~gg---~VlyId~E~s~~~~ra~rlgv- 111 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ---KMGG---VAAFIDAEHALDPVYAKNLGV- 111 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH---HTTC---CEEEEESSCCCCHHHHHHHTC-
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---hcCC---eEEEEecccccchHHHHHcCC-
Confidence 6889999999999999 9999999999999999999999999999876 4555 899999999998887766642
Q ss_pred hCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh-hccCCChhhH--HHHHHHHHH
Q 022155 96 FRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR-SDFDNTMDDL--KKRSFLFFK 172 (302)
Q Consensus 96 ~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~-~~~~~~~~~~--~~r~~~l~~ 172 (302)
..+++.+..+.+.+++.+.+ ..++.. ..+++|||||+++++. .++.+.+++. ..+.+.+.+
T Consensus 112 --------~~~~l~i~~~~~~e~~l~~~---~~l~~~-----~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~ 175 (356)
T 3hr8_A 112 --------DLKSLLISQPDHGEQALEIV---DELVRS-----GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQ 175 (356)
T ss_dssp --------CGGGCEEECCSSHHHHHHHH---HHHHHT-----SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHH
T ss_pred --------chhhhhhhhccCHHHHHHHH---HHHhhh-----cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHH
Confidence 24677788777777665544 344443 4569999999999985 6666543321 123445778
Q ss_pred HHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccc
Q 022155 173 ISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQ 252 (302)
Q Consensus 173 l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~ 252 (302)
+++.|+.++++++++||++||++++.... | +.+.+|++|..|.|++++||.|++....+ ++.
T Consensus 176 ~L~~L~~lak~~~~tVI~inqv~~k~g~~--------------f--g~p~~~~GG~~l~h~~~~rl~l~k~~~~k--~g~ 237 (356)
T 3hr8_A 176 ALRKIAGSVNKSKAVVIFTNQIRMKIGVM--------------F--GSPETTTGGLALKFYATMRMEVRRGEPIK--EGK 237 (356)
T ss_dssp HHHHHHHHHHTSSCEEEEEEESSSCSSSS--------------S--CSCSSCTHHHHHHHHCSEEEEEEEEEEEE--ETT
T ss_pred HHHHHHHHHHhcCCEEEEEeeeeeccccc--------------c--CCcccCCCcchhhhhCcEEEEEEeccccc--cCC
Confidence 89999999999999999999998776543 2 13467999999999999999999865321 111
Q ss_pred cccCCCCCCCCCCcccccceEEEEEEECCCC-CCceeeEEE-ecCccccc
Q 022155 253 MVNGGVGGSGSEDFVCRRTRRSLHVVFAPHL-ADTSCEFEI-TREGVFGV 300 (302)
Q Consensus 253 ~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~-~~~~~~F~I-~~~Gi~~~ 300 (302)
.+. ...|.++++|+++. |...+.|.| ..+||..+
T Consensus 238 ~~~--------------g~~~~vkvvKnr~~~~~~~~~f~i~~~~Gi~~~ 273 (356)
T 3hr8_A 238 DVI--------------GNVISVKIVKNKVAPPFKTAQTYIIYGKGIDRE 273 (356)
T ss_dssp EEE--------------EEEEEEEEEEESSSCCCCEEEEEEETTTBSCHH
T ss_pred ccc--------------ccEEEEEEEeCCCCCCCceEEEEEeeCCCcChh
Confidence 111 25799999999998 467899999 58998753
No 8
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=100.00 E-value=7.3e-33 Score=243.92 Aligned_cols=226 Identities=15% Similarity=0.266 Sum_probs=156.9
Q ss_pred CCccccCChhhHhhhC----CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcC--CCCCCeEEEEeCCCCCCHHHHH
Q 022155 17 TEKCTVGCPIIDRCLG----GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSH--GGLSASSLYLHTEFPFPMRRLH 90 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~----GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~--gg~~~~vlyid~e~~~~~~rl~ 90 (302)
.++++||++.||.+|+ ||+++| +++|+||||+||||||+|++.+++ .. |+ +|+|||+|+++++.|++
T Consensus 4 ~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~---~~g~g~---~vlyId~E~s~~~~ra~ 76 (333)
T 3io5_A 4 MDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYM---RQYPDA---VCLFYDSEFGITPAYLR 76 (333)
T ss_dssp --CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHH---HHCTTC---EEEEEESSCCCCHHHHH
T ss_pred CCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHH---hcCCCc---eEEEEeccchhhHHHHH
Confidence 5689999999999999 999999 999999999999999999999986 33 44 89999999999988866
Q ss_pred HHHHHhCCCCCCCCCCcEEEEeCCCHHHH-HHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh-hccCCChhh--HH--
Q 022155 91 QLSHTFRPSNDHNPCDYIFVQSVHSVDQL-LDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR-SDFDNTMDD--LK-- 164 (302)
Q Consensus 91 ~i~~~~~~~~~~~~l~~i~~~~~~~~~~l-~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~-~~~~~~~~~--~~-- 164 (302)
++. ...+++++..+.+.+++ ++++..+.. +. +..+++|||||++++++ .++.+.+++ ..
T Consensus 77 ~lG---------vd~d~llv~~~~~~E~~~l~i~~~l~~-i~-----~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv 141 (333)
T 3io5_A 77 SMG---------VDPERVIHTPVQSLEQLRIDMVNQLDA-IE-----RGEKVVVFIDSLGNLASKKETEDALNEKVVSDM 141 (333)
T ss_dssp HTT---------CCGGGEEEEECSBHHHHHHHHHHHHHT-CC-----TTCCEEEEEECSTTCBCC--------------C
T ss_pred HhC---------CCHHHeEEEcCCCHHHHHHHHHHHHHH-hh-----ccCceEEEEecccccccchhccCccccccccHH
Confidence 654 23578889898888887 665544432 33 35679999999999984 566554432 11
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEec
Q 022155 165 KRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNE 244 (302)
Q Consensus 165 ~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~ 244 (302)
.+.+.+.+.++.|..+++++|++||+|||+++ +.. +|.+ + ++.+|..+ |..++||.|.|..
T Consensus 142 ~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k-~G~--------------~fg~--p-~~~GG~~l-~~ss~Rl~lrk~~ 202 (333)
T 3io5_A 142 TRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE-TQE--------------MFSK--T-VMGGGTGP-MYSADTVFIIGKR 202 (333)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEEEEEEEC---------------------------------CCG-GGGSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCEEEEECCeee-cCc--------------ccCC--C-CCCCccee-eeeeEEEEEEecc
Confidence 34556788889999999999999999999987 543 3322 2 34899999 9999999999876
Q ss_pred CchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCC-CceeeEEEe-cCcccc
Q 022155 245 DFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA-DTSCEFEIT-REGVFG 299 (302)
Q Consensus 245 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~-~~~~~F~I~-~~Gi~~ 299 (302)
..+ ++.++.| .+.+++++|+...+ ....+|.|. ..||..
T Consensus 203 ~ik--~~~~~~G--------------~~~~v~~~k~kv~k~k~~~~~~i~~~~Gi~~ 243 (333)
T 3io5_A 203 QIK--DGSDLQG--------------YQFVLNVEKSRTVKEKSKFFIDVKFDGGIDP 243 (333)
T ss_dssp --------------------------CEEEEEEEECSSBCTTCEEEEEBCTTSCBCT
T ss_pred ccc--cCCccEE--------------eEEEEeEEEEEEccCCcCCcEEEEecCCCCh
Confidence 543 3333444 57788889988774 456789988 578754
No 9
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.97 E-value=4.4e-30 Score=219.62 Aligned_cols=229 Identities=30% Similarity=0.472 Sum_probs=171.8
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHT 95 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~ 95 (302)
..++++||++.||++|+||+++|+++.|+||||||||||+.+++.....+...|+..++++|++++..++.+++..+.+.
T Consensus 3 ~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~ 82 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN 82 (231)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred cCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999987544444444558999999988888888877776
Q ss_pred hCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHH
Q 022155 96 FRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISG 175 (302)
Q Consensus 96 ~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~ 175 (302)
+.. .++.+.+++.+....+..+....+..+..++........++++|++|++++.+..++++. ++..+|.+.+.+++.
T Consensus 83 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~-~~~~~r~~~~~~~~~ 160 (231)
T 4a74_A 83 RGL-DPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLA 160 (231)
T ss_dssp TTS-CHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCST-THHHHHHHHHHHHHH
T ss_pred cCC-CHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCC-cchhHHHHHHHHHHH
Confidence 532 222455788887777766555555555555541000024679999999999887766653 245677777789999
Q ss_pred HHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhccccccc
Q 022155 176 MLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVN 255 (302)
Q Consensus 176 ~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~ 255 (302)
.|++++++++++||+++|..+. .|..|.+.++.+++|.+...
T Consensus 161 ~l~~~~~~~g~tvi~vtH~~~~----------------------------~g~~~~~~~d~~l~l~~~~~---------- 202 (231)
T 4a74_A 161 DLHRLANLYDIAVFVTNQVQAN----------------------------GGHILAHSATLRVYLRKGKG---------- 202 (231)
T ss_dssp HHHHHHHHHTCEEEEEEECC-------------------------------------CCSEEEEEEECTT----------
T ss_pred HHHHHHHHCCCeEEEEeecccC----------------------------cchhhHhhceEEEEEEecCC----------
Confidence 9999999999999999998642 45678899999999988432
Q ss_pred CCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEecCcccc
Q 022155 256 GGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFG 299 (302)
Q Consensus 256 g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~~~Gi~~ 299 (302)
..|.+++.|+++.|...+.|+|+++||++
T Consensus 203 ---------------~~r~l~~~K~r~~~~~~~~f~i~~~Gl~~ 231 (231)
T 4a74_A 203 ---------------GKRIARLIDAPHLPEGEAVFSITEKGIED 231 (231)
T ss_dssp ---------------SCEEEEEESCC--CCSCEEEEEETTEEEC
T ss_pred ---------------CeEEEEEEeCCCCCCceEEEEEecccccC
Confidence 57999999999998888899999999985
No 10
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.97 E-value=3.5e-30 Score=218.78 Aligned_cols=219 Identities=22% Similarity=0.228 Sum_probs=169.5
Q ss_pred ccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCC
Q 022155 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRP 98 (302)
Q Consensus 19 ~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~ 98 (302)
+++||++.||.+++||+++|++++|+||||+|||||+++++. . .++ +|+|++++..++.+++.++...+..
T Consensus 1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~-----~~~---~v~~i~~~~~~~~~~~~~~~~~~~~ 71 (220)
T 2cvh_A 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-L-----SGK---KVAYVDTEGGFSPERLVQMAETRGL 71 (220)
T ss_dssp CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-H-----HCS---EEEEEESSCCCCHHHHHHHHHTTTC
T ss_pred CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-H-----cCC---cEEEEECCCCCCHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999998 2 233 8999999988888888776654321
Q ss_pred CCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHH
Q 022155 99 SNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLK 178 (302)
Q Consensus 99 ~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~ 178 (302)
..+..++++.+....+.+++...+..+..++. . ++++||||+++.++...... ..+.+.+.++++.|+
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~-~~~lliiD~~~~~l~~~~~~-----~~~~~~~~~~~~~L~ 139 (220)
T 2cvh_A 72 -NPEEALSRFILFTPSDFKEQRRVIGSLKKTVD-----S-NFALVVVDSITAHYRAEENR-----SGLIAELSRQLQVLL 139 (220)
T ss_dssp -CHHHHHHHEEEECCTTTSHHHHHHHHHHHHCC-----T-TEEEEEEECCCCCTTGGGGS-----STTHHHHHHHHHHHH
T ss_pred -ChHHHhhcEEEEecCCHHHHHHHHHHHHHHhh-----c-CCCEEEEcCcHHHhhhcCch-----HHHHHHHHHHHHHHH
Confidence 11123456777777666665556666665553 1 57999999999976432111 112334678889999
Q ss_pred HHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcccccccCCC
Q 022155 179 AMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGV 258 (302)
Q Consensus 179 ~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~ 258 (302)
+++++++++||+++|....... ....|+++..|.+.++.+++|.+.+.
T Consensus 140 ~l~~~~~~~vi~~~h~~~~~~~-------------------~~~~p~~~~~~~~~~d~vi~l~~~~~------------- 187 (220)
T 2cvh_A 140 WIARKHNIPVIVINQVHFDSRT-------------------EMTKPVAEQTLGYRCKDILRLDKLPK------------- 187 (220)
T ss_dssp HHHHHHTCCEEEEECSSSSCTT-------------------SSCCSCCCHHHHHTSSEEEEEEECSS-------------
T ss_pred HHHHHcCCEEEEEeeEEEcCCC-------------------CccccCCCcceeecCcEEEEEEEecC-------------
Confidence 9999999999999998754331 23578999999999999999998754
Q ss_pred CCCCCCCcccccceEEEEEEECCCCCCc-eeeEEEecCcccccC
Q 022155 259 GGSGSEDFVCRRTRRSLHVVFAPHLADT-SCEFEITREGVFGVE 301 (302)
Q Consensus 259 ~~~~~~~~~~~~~~R~~~v~ks~~~~~~-~~~F~I~~~Gi~~~~ 301 (302)
...|.+.|.|+++.+.. .+.|+|+++||+.++
T Consensus 188 -----------~~~r~l~v~K~r~~~~~~~~~f~I~~~Gi~~~~ 220 (220)
T 2cvh_A 188 -----------PGLRVAVLERHRFRPEGLMAYFRITERGIEDVE 220 (220)
T ss_dssp -----------TTEEEEEEEECSSSCTTCEEEEEEETTEEEECC
T ss_pred -----------CCEEEEEEEeCCCCCCCceEEEEEeCCceecCC
Confidence 24799999999988654 599999999999874
No 11
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.97 E-value=8.2e-30 Score=231.58 Aligned_cols=230 Identities=23% Similarity=0.277 Sum_probs=164.7
Q ss_pred CCCCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHH
Q 022155 15 LTTEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLS 93 (302)
Q Consensus 15 ~~~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~ 93 (302)
.....+|||++.||.+|+ |||++|.+++|+|+||+|||+||++++.+++ ..|+ +|+|||+|.++++.+...+
T Consensus 39 ~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~---~~g~---~vlyid~E~s~~~~~a~~~- 111 (356)
T 1u94_A 39 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGK---TCAFIDAEHALDPIYARKL- 111 (356)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH---HTTC---CEEEEESSCCCCHHHHHHT-
T ss_pred ccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCC---eEEEEeCCCCccHHHHHHc-
Confidence 457899999999999999 9999999999999999999999999999886 4555 8999999999887654332
Q ss_pred HHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh-hccCCChhhH--HHHHHHH
Q 022155 94 HTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR-SDFDNTMDDL--KKRSFLF 170 (302)
Q Consensus 94 ~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~-~~~~~~~~~~--~~r~~~l 170 (302)
. ...+++.+..+.+.+++.+++. .++.+ ..+++||||+++.++. .++.+..++. ..+.+.+
T Consensus 112 ---g-----~~~~~l~i~~~~~~e~~~~~~~---~l~~~-----~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~ 175 (356)
T 1u94_A 112 ---G-----VDIDNLLCSQPDTGEQALEICD---ALARS-----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM 175 (356)
T ss_dssp ---T-----CCGGGCEEECCSSHHHHHHHHH---HHHHH-----TCCSEEEEECGGGCCCHHHHTTC------CHHHHHH
T ss_pred ---C-----CChhheeeeCCCCHHHHHHHHH---HHHhc-----cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHH
Confidence 2 1246777777777666655543 33333 4679999999999874 4443322110 0122356
Q ss_pred HHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcc
Q 022155 171 FKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRE 250 (302)
Q Consensus 171 ~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~ 250 (302)
.++++.|+.++++++++||++||+...+...+ +....|.+|..|.+.+++|+.|.|.+..+ +
T Consensus 176 ~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f----------------g~~~~~~gG~~l~~~advrl~l~r~~~~k--~ 237 (356)
T 1u94_A 176 SQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF----------------GNPETTTGGNALKFYASVRLDIRRIGAVK--E 237 (356)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEC------------------------------CTTCSHHHHHCSEEEEEEEEEEEE--S
T ss_pred HHHHHHHHHHHHHhCCEEEEEeccccccCccc----------------CCCcccCCCcceeeeccEEEEEEEeeeec--c
Confidence 78899999999999999999999987655321 12467889999999999999999875321 1
Q ss_pred cccccCCCCCCCCCCcccccceEEEEEEECCCCC-CceeeEEE-ecCcccc
Q 022155 251 NQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA-DTSCEFEI-TREGVFG 299 (302)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~-~~~~~F~I-~~~Gi~~ 299 (302)
+.... ...|.++|+|++..| ...++|.| ...||..
T Consensus 238 g~~~~--------------g~~~~~~i~K~r~~p~~~~~~f~i~~~~Gi~~ 274 (356)
T 1u94_A 238 GENVV--------------GSETRVKVVKNKIAAPFKQAEFQILYGEGINF 274 (356)
T ss_dssp SSSEE--------------EEEEEEEEEEESSBCSCCEEEEEEETTTEECH
T ss_pred Ccccc--------------CcEEEEEECCCccCCCCCcEEEEEEcCCCcCc
Confidence 11011 258899999999887 67899999 5888863
No 12
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.97 E-value=7.6e-30 Score=232.48 Aligned_cols=231 Identities=25% Similarity=0.315 Sum_probs=163.8
Q ss_pred CCCCCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHH
Q 022155 14 PLTTEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQL 92 (302)
Q Consensus 14 ~~~~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i 92 (302)
......++||++.||.+|+ |||++|.+++|+|+||+|||+||++++.+++ ..|+ +|+||++|.++...+.+.+
T Consensus 49 ~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~---~~g~---~vlyi~~E~s~~~~~a~~~ 122 (366)
T 1xp8_A 49 KLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ---KAGG---TCAFIDAEHALDPVYARAL 122 (366)
T ss_dssp CCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH---HTTC---CEEEEESSCCCCHHHHHHT
T ss_pred cccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH---HCCC---eEEEEECCCChhHHHHHHc
Confidence 3457899999999999999 9999999999999999999999999999986 4455 8999999998887654332
Q ss_pred HHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh-hccCCChhhH--HHHHHH
Q 022155 93 SHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR-SDFDNTMDDL--KKRSFL 169 (302)
Q Consensus 93 ~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~-~~~~~~~~~~--~~r~~~ 169 (302)
. ...+++++.++.+.+++.+.+ +.++.+ ..+++||||+++.++. .++.+.+++. ..+.+.
T Consensus 123 g---------~d~~~l~i~~~~~~e~~l~~l---~~l~~~-----~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~ 185 (366)
T 1xp8_A 123 G---------VNTDELLVSQPDNGEQALEIM---ELLVRS-----GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARL 185 (366)
T ss_dssp T---------CCGGGCEEECCSSHHHHHHHH---HHHHTT-----TCCSEEEEECTTTCCCSTTC--------CCHHHHH
T ss_pred C---------CCHHHceeecCCcHHHHHHHH---HHHHhc-----CCCCEEEEeChHHhccccccccccccchhhHHHHH
Confidence 2 124677887777776655444 344432 4679999999999873 4443222110 023345
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecC-chh
Q 022155 170 FFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED-FVV 248 (302)
Q Consensus 170 l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~-~~~ 248 (302)
+.++++.|+.++++++++||++||+....... | +....|.+|.+|.+.+++|++|.|... .+
T Consensus 186 ~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~--------------f--g~p~~~~gg~al~~~a~~rl~L~r~~~~~k- 248 (366)
T 1xp8_A 186 MSQALRKLTAILSKTGTAAIFINQVREKIGVM--------------Y--GNPETTTGGRALKFYASVRLDVRKIGQPTK- 248 (366)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEEEC-------------------------------CHHHHHHHCSEEEEEEEESCCC--
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEecccccCcc--------------c--CCccccCCcchhhheeeEEEEEEecchhcc-
Confidence 77889999999999999999999998766432 1 124578899999999999999999764 22
Q ss_pred cccccccCCCCCCCCCCcccccceEEEEEEECCCCC-CceeeEEEe-cCcccc
Q 022155 249 RENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA-DTSCEFEIT-REGVFG 299 (302)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~-~~~~~F~I~-~~Gi~~ 299 (302)
++.... ...|.++|+|++..| ...+.|.|. ..||..
T Consensus 249 -~~~~~~--------------g~~~~v~v~Knr~~p~~~~~~f~i~~~~Gi~~ 286 (366)
T 1xp8_A 249 -VGNDAV--------------ANTVKIKTVKNKVAAPFKEVELALVYGKGFDQ 286 (366)
T ss_dssp ------C--------------EEEEEEEEEEESSSCCCCEEEEEEETTTEECH
T ss_pred -cCcccc--------------CCEEEEEEEcCCCCCCCceEEEEEEeCCCccc
Confidence 111111 258999999999986 678999998 788863
No 13
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.97 E-value=1e-29 Score=230.68 Aligned_cols=230 Identities=23% Similarity=0.310 Sum_probs=166.1
Q ss_pred CCCCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHH
Q 022155 15 LTTEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLS 93 (302)
Q Consensus 15 ~~~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~ 93 (302)
....+++||++.||.+|+ ||+++|++++|+||||+||||||++++.+++ ..|+ +|+||++|.+++..+.+.+.
T Consensus 37 ~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~---~vlyi~~E~~~~~~~a~~lG 110 (349)
T 2zr9_A 37 QPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ---AAGG---IAAFIDAEHALDPEYAKKLG 110 (349)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH---HTTC---CEEEEESSCCCCHHHHHHTT
T ss_pred ccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---hCCC---eEEEEECCCCcCHHHHHHcC
Confidence 457899999999999999 9999999999999999999999999999886 4455 89999999988876533322
Q ss_pred HHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh-hccCCChhhH--HHHHHHH
Q 022155 94 HTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR-SDFDNTMDDL--KKRSFLF 170 (302)
Q Consensus 94 ~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~-~~~~~~~~~~--~~r~~~l 170 (302)
...+++.+..+.+.+++.+++ ..++.+ .++++|||||+++++. .++.+.+++. ..+.+.+
T Consensus 111 ---------~~~~~l~i~~~~~~e~~l~~~---~~l~~~-----~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~ 173 (349)
T 2zr9_A 111 ---------VDTDSLLVSQPDTGEQALEIA---DMLVRS-----GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLM 173 (349)
T ss_dssp ---------CCGGGCEEECCSSHHHHHHHH---HHHHTT-----TCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHH
T ss_pred ---------CCHHHeEEecCCCHHHHHHHH---HHHHhc-----CCCCEEEEcChHhhcchhhhccccccchhhHHHHHH
Confidence 124677777777766655443 334432 4679999999999873 4444332221 0122346
Q ss_pred HHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcc
Q 022155 171 FKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRE 250 (302)
Q Consensus 171 ~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~ 250 (302)
.++++.|..++++++++||++||+.......+ +.+..|.+|..|.|.++.|++|.|.+..+ +
T Consensus 174 ~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~----------------~~p~~~~gg~~l~~~ad~~l~lrr~~~~k--~ 235 (349)
T 2zr9_A 174 SQALRKMTGALNNSGTTAIFINELREKIGVMF----------------GSPETTTGGKALKFYASVRLDVRRIETLK--D 235 (349)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECC---------------------------CCSSHHHHHHHCSEEEEEEEEEEEC--S
T ss_pred HHHHHHHHHHHHHhCCEEEEEeccccccCccc----------------CCCcccCCchHhhhccceEEEEEEeeeee--c
Confidence 78888888889999999999999987654321 12456889999999999999999865321 1
Q ss_pred cccccCCCCCCCCCCcccccceEEEEEEECCCCC-CceeeEEEe-cCcccc
Q 022155 251 NQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA-DTSCEFEIT-REGVFG 299 (302)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~-~~~~~F~I~-~~Gi~~ 299 (302)
+.... ...|.++|+|++..| ...++|.|. ..||..
T Consensus 236 g~~~~--------------g~~~~~~i~K~~~~p~~~~~~fdi~~~~Gi~~ 272 (349)
T 2zr9_A 236 GTDAV--------------GNRTRVKVVKNKVSPPFKQAEFDILYGQGISR 272 (349)
T ss_dssp SSSCC--------------EEEEEEEEEEESSSCCCCEEEEEEETTSCBCH
T ss_pred Ccccc--------------CCEEEEEeCCCccCCCCceEEEEEEeCCCcCc
Confidence 11011 257899999999886 678999994 889863
No 14
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.96 E-value=1.9e-27 Score=205.60 Aligned_cols=221 Identities=17% Similarity=0.193 Sum_probs=146.8
Q ss_pred CCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHH
Q 022155 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSH 94 (302)
Q Consensus 15 ~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~ 94 (302)
...+++|||++.||++|+|||++|++++|+|+||+|||+||+|+|.+.+. ..+. +|+|+++|.+ .+++.+.+.
T Consensus 7 ~~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~--~~~~---~v~~~s~E~~--~~~~~~~~~ 79 (251)
T 2zts_A 7 QPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE--EYGE---PGVFVTLEER--ARDLRREMA 79 (251)
T ss_dssp -CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHH--HHCC---CEEEEESSSC--HHHHHHHHH
T ss_pred CCCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--hcCC---CceeecccCC--HHHHHHHHH
Confidence 35678999999999999999999999999999999999999999987642 2344 7999999864 444433333
Q ss_pred HhCCCCCC-CCCCcEEEE---------------eCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCC
Q 022155 95 TFRPSNDH-NPCDYIFVQ---------------SVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDN 158 (302)
Q Consensus 95 ~~~~~~~~-~~l~~i~~~---------------~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~ 158 (302)
++...... ....++.+. ..........++..+...+.. .+++++|||+++.+.... .
T Consensus 80 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vviD~~~~l~~~~-~- 152 (251)
T 2zts_A 80 SFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKA-----INAKRLVIDSIPSIALRL-E- 152 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHH-----TTCSEEEEECHHHHHHHS-S-
T ss_pred HcCCChHHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHh-----cCCcEEEEEcHHHHhhhc-c-
Confidence 32110000 000011111 111111123344555555554 467999999999976432 1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEE
Q 022155 159 TMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRL 238 (302)
Q Consensus 159 ~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl 238 (302)
.. . .+.+++..|+.+++++++++++++|+....... ......+.+.+|..+
T Consensus 153 ~~---~----~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~----------------------~~~~~~~~~~aD~vi 203 (251)
T 2zts_A 153 EE---R----KIREVLLKLNTILLEMGVTTILTTEAPDPQHGK----------------------LSRYGIEEFIARGVI 203 (251)
T ss_dssp SG---G----GHHHHHHHHHHHHHHHCCEEEEEECCC----CC----------------------SSSSSCGGGGCSEEE
T ss_pred Ch---H----HHHHHHHHHHHHHHHcCCCeEEEEEEecccccc----------------------cccCCceeEEeeEEE
Confidence 11 1 145778899999999999999999986432211 011123566778889
Q ss_pred EEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCC--CceeeEEEecCccccc
Q 022155 239 FLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA--DTSCEFEITREGVFGV 300 (302)
Q Consensus 239 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~--~~~~~F~I~~~Gi~~~ 300 (302)
.|.+.+. . + ...|.++|.|.++.| ...++|+|+++||+.+
T Consensus 204 ~l~~~~~----~-----~-------------~~~R~l~I~K~R~~~~~~~~~~f~It~~Gi~v~ 245 (251)
T 2zts_A 204 VLDLQEK----N-----I-------------ELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVY 245 (251)
T ss_dssp EEEEEEC----S-----S-------------SEEEEEEEEEETTCCCCCBEEEEEEETTEEEEC
T ss_pred EEEEEec----C-----C-------------eEEEEEEEEEcCCCCCCCEEEEEEEeCCcEEEe
Confidence 9988665 1 1 468999999988775 5678999999999865
No 15
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.95 E-value=1.8e-27 Score=250.49 Aligned_cols=230 Identities=23% Similarity=0.288 Sum_probs=178.7
Q ss_pred CCCCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHH
Q 022155 15 LTTEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLS 93 (302)
Q Consensus 15 ~~~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~ 93 (302)
.....++||++.||++|+ |||++|++++|+|+||+|||+||+++|.+++ ..++ +|+||++|.++.+.+ +
T Consensus 708 ~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a---~~g~---~VlyiS~Ees~~ql~----A 777 (2050)
T 3cmu_A 708 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGK---TCAFIDAEHALDPIY----A 777 (2050)
T ss_dssp TSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH---TTTC---CEEEECTTSCCCHHH----H
T ss_pred cccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCC---cEEEEECCCcHHHHH----H
Confidence 457899999999999998 7999999999999999999999999999987 3344 899999999988764 2
Q ss_pred HHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh-hccCCChh----hHHHHHH
Q 022155 94 HTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR-SDFDNTMD----DLKKRSF 168 (302)
Q Consensus 94 ~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~-~~~~~~~~----~~~~r~~ 168 (302)
..+. ...+++++.+..+.+++.+.+.+ +..+ .++++||||||+.++. .++.+..+ ++..|.
T Consensus 778 ~rlG-----~~~~~l~i~~~~~i~~i~~~~r~---l~~~-----~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Re- 843 (2050)
T 3cmu_A 778 RKLG-----VDIDNLLCSQPDTGEQALEICDA---LARS-----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARM- 843 (2050)
T ss_dssp HHTT-----CCTTTCEEECCSSHHHHHHHHHH---HHHH-----TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHH-
T ss_pred HHcC-----CCccceEEecCCCHHHHHHHHHH---Hhhc-----cCCCEEEEcchhhhcccccccCCCCchhhHHHHHH-
Confidence 2332 12368888888777776665543 3333 3579999999999986 44322211 234443
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchh
Q 022155 169 LFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVV 248 (302)
Q Consensus 169 ~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~ 248 (302)
+.++++.|+.+|++++|+||++||+.+..+.. | +.+.+|++|..|+|++++|++|.|.....
T Consensus 844 -is~ilr~Lk~lAke~~v~VI~l~Qv~r~~e~~--------------f--gdp~~p~GG~~l~h~a~~Rl~Lrr~~~~~- 905 (2050)
T 3cmu_A 844 -MSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM--------------F--GNPETTTGGNALKFYASVRLDIRRIGAVK- 905 (2050)
T ss_dssp -HHHHHHHHHHHHHTTTCEEEEEECCEECTTCC--------------S--SCCEECSSHHHHHHHEEEEEEEEEEEEEE-
T ss_pred -HHHHHHHHHHHHHHhCCEEEEeccccccchhh--------------c--CCCccccCCceeeeeeeEEEEEEeecccc-
Confidence 67889999999999999999999999887643 2 24689999999999999999999863210
Q ss_pred cccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEE-ecCccccc
Q 022155 249 RENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEI-TREGVFGV 300 (302)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I-~~~Gi~~~ 300 (302)
++....| ...|.++|.+||..|..++.|.| +..||.++
T Consensus 906 -~g~~~~G-------------~~~Rv~~v~~sp~lp~~e~~f~I~~~~Gi~~~ 944 (2050)
T 3cmu_A 906 -EGENVVG-------------SETRVKVVKNKIAAPFKQAEFQILYGEGINFY 944 (2050)
T ss_dssp -ETTEEEE-------------EEEEEEEEEESSSCSCCEEEEEEETTTEECHH
T ss_pred -ccccccC-------------CcceEEEEecCCCCCCceEEEEEEcCCCcccH
Confidence 0111223 46889999999999999999999 89999853
No 16
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.95 E-value=6.9e-27 Score=246.10 Aligned_cols=230 Identities=23% Similarity=0.289 Sum_probs=170.0
Q ss_pred CCCCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHH
Q 022155 15 LTTEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLS 93 (302)
Q Consensus 15 ~~~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~ 93 (302)
....+++||++.||.+|+ ||||+|++++|+|+||+|||+||+|++.+++ ..|. +|+||++|.+++..++.++.
T Consensus 10 ~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~---~~Ge---~vlYI~tEes~~~~ra~~lG 83 (2050)
T 3cmu_A 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGK---TCAFIDAEHALDPIYARKLG 83 (2050)
T ss_dssp --CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH---TTTC---CEEEECTTSCCCHHHHHHTT
T ss_pred cCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhh---ccCC---ceEEEEccCcchhhHHhhhc
Confidence 446889999999999998 9999999999999999999999999999986 3455 89999999999888754432
Q ss_pred HHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhc-cCCC--hhhHHHHHHHH
Q 022155 94 HTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSD-FDNT--MDDLKKRSFLF 170 (302)
Q Consensus 94 ~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~-~~~~--~~~~~~r~~~l 170 (302)
..++++.+.++...+++.+++..+. .. .++++|||||++++++.. ...+ ..+...|.+.+
T Consensus 84 ---------~dl~~i~v~~p~~~e~ll~il~~L~---~~-----~~~~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l 146 (2050)
T 3cmu_A 84 ---------VDIDNLLCSQPDTGEQALEICDALA---RS-----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM 146 (2050)
T ss_dssp ---------CCTTTCEEECCSSHHHHHHHHHHHH---HH-----TCCSEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHH
T ss_pred ---------cCcccceecCCCcHHHHHHHHHHHH---hc-----cCCcEEEEcChHHhhhhcccccccccchhhHHHHHH
Confidence 1245566666666666555544332 22 457999999999998642 1110 00122344557
Q ss_pred HHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcc
Q 022155 171 FKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRE 250 (302)
Q Consensus 171 ~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~ 250 (302)
..++..|+.++++++++||+|||+.+..... + +....|.+|..|.|++++||.|++....+ +
T Consensus 147 ~~~l~~L~~~ak~~gitVVlTNQv~~~~g~~--------------f--g~~~~~~gG~~l~~iaD~VI~L~r~~~vk--~ 208 (2050)
T 3cmu_A 147 SQAMRKLAGNLKQSNTLLIFINQIRMKIGVM--------------F--GNPETTTGGNALKFYASVRLDIRRIGAVK--E 208 (2050)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCEECTTCC--------------S--SCCEECSSHHHHHHHEEEEEEEEEEEEEE--E
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecccccccc--------------c--CcccccCCcchhhhhCcEEEEEEeccccc--c
Confidence 7899999999999999999999998765432 1 12467999999999999999999854311 1
Q ss_pred cccccCCCCCCCCCCcccccceEEEEEEECCCC-CCceeeEEEe-cCcccc
Q 022155 251 NQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHL-ADTSCEFEIT-REGVFG 299 (302)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~-~~~~~~F~I~-~~Gi~~ 299 (302)
+....| ..|+++|.|++.. |...++|.|. ..||.-
T Consensus 209 ge~~~G--------------~~Rrl~V~K~R~~~p~~~~~F~I~~g~GI~~ 245 (2050)
T 3cmu_A 209 GENVVG--------------SETRVKVVKNKIAAPFKQAEFQILYGEGINF 245 (2050)
T ss_dssp TTEEEE--------------EEEEEEEEEESSSCSCCEEEEEEETTTEECH
T ss_pred cccccc--------------ceEEEEEEeccCCCCCceEEEEEEcCCCeEE
Confidence 111112 4699999999987 4568999996 568753
No 17
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.94 E-value=5.9e-26 Score=237.01 Aligned_cols=230 Identities=23% Similarity=0.292 Sum_probs=173.9
Q ss_pred CCCCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHH
Q 022155 15 LTTEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLS 93 (302)
Q Consensus 15 ~~~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~ 93 (302)
.....++||++.||.+|+ |||++|++++|+||||+|||+||++++.+++ ..|+ +|+||++|.+++..+.+.+.
T Consensus 359 ~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G~---~vlyis~E~s~~~~~a~~lG 432 (1706)
T 3cmw_A 359 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGK---TCAFIDAEHALDPIYARKLG 432 (1706)
T ss_dssp GSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH---HTTC---CEEEECTTSCCCHHHHHHTT
T ss_pred ccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HhCC---CeEEEEccCchHHHHHHHcC
Confidence 457899999999999999 9999999999999999999999999999987 4565 89999999999876543322
Q ss_pred HHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh-hccCCChhh--HHHHHHHH
Q 022155 94 HTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR-SDFDNTMDD--LKKRSFLF 170 (302)
Q Consensus 94 ~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~-~~~~~~~~~--~~~r~~~l 170 (302)
..++++++..+.+.+++.+.+ ..++.+ .++++|||||+++++. .++++.+++ ...+.+.+
T Consensus 433 ---------vd~~~L~i~~~~~~e~~l~~l---~~lv~~-----~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~ 495 (1706)
T 3cmw_A 433 ---------VDIDNLLCSQPDTGEQALEIC---DALARS-----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM 495 (1706)
T ss_dssp ---------CCGGGCEEECCSSHHHHHHHH---HHHHHH-----TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHH
T ss_pred ---------CCHHHeEEcCCCCHHHHHHHH---HHHHHh-----cCCCEEEECCHHHhhccccccccccccchhHHHHHH
Confidence 234678888887777665544 344443 4679999999999884 333322211 11233457
Q ss_pred HHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCchhcc
Q 022155 171 FKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRE 250 (302)
Q Consensus 171 ~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~~~~ 250 (302)
.++++.|+.++++++++||++||++..+...+ +...+|++|.+|.+.+++|++|.|.+... +
T Consensus 496 s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~f----------------g~~~~p~gg~ale~~ADv~L~L~R~~~~~--~ 557 (1706)
T 3cmw_A 496 SQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF----------------GNPETTTGGNALKFYASVRLDIRRIGAVK--E 557 (1706)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECEEECTTCCS----------------SCCEEESSCSHHHHHEEEEEEEEEEEEEE--E
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccccc----------------CCCccCCCCcceeeeCCEEEEEEeccccc--c
Confidence 78899999999999999999999998765432 13467899999999999999999975321 1
Q ss_pred cccccCCCCCCCCCCcccccceEEEEEEECCCCC-CceeeEEEe-cCcccc
Q 022155 251 NQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA-DTSCEFEIT-REGVFG 299 (302)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~-~~~~~F~I~-~~Gi~~ 299 (302)
+.... ..+|.++|+|++..| ...+.|.|. +.||..
T Consensus 558 g~~~~--------------~~~~~l~V~KnR~gp~~~~~~F~I~~~~Gi~~ 594 (1706)
T 3cmw_A 558 GENVV--------------GSETRVKVVKNKIAAPFKQAEFQILYGEGINF 594 (1706)
T ss_dssp TTEEE--------------EEEEEEEEEEESSSCSCCEEEEEEETTTEECH
T ss_pred Ccccc--------------CcEEEEEEEecCCCCCCCeEEEEEecCCCccc
Confidence 10000 257899999999885 567999974 678763
No 18
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.93 E-value=4.4e-25 Score=190.39 Aligned_cols=213 Identities=22% Similarity=0.263 Sum_probs=145.1
Q ss_pred CccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhC
Q 022155 18 EKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFR 97 (302)
Q Consensus 18 ~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~ 97 (302)
++++||++.||++|+||+++|++++|+||||+|||||+++++...+ ..|+ +|+|++++.+ ..++.+....+.
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~---~v~~~~~e~~--~~~~~~~~~~~g 74 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL---KMGE---PGIYVALEEH--PVQVRQNMAQFG 74 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH---HTTC---CEEEEESSSC--HHHHHHHHHTTT
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH---hcCC---eEEEEEccCC--HHHHHHHHHHcC
Confidence 5789999999999999999999999999999999999999998875 4455 8999999865 344433333222
Q ss_pred CCCCCCC--CCcEEEEeC----------------CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCC
Q 022155 98 PSNDHNP--CDYIFVQSV----------------HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNT 159 (302)
Q Consensus 98 ~~~~~~~--l~~i~~~~~----------------~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~ 159 (302)
.. .+.. ..++.+... ....++.+++..+.+.+.+ .++++||||+++.+...+
T Consensus 75 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~vviD~~~~l~~~~---- 144 (247)
T 2dr3_A 75 WD-VKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRD-----INAKRVVVDSVTTLYINK---- 144 (247)
T ss_dssp CC-CHHHHHHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHH-----HTCCEEEEETSGGGTTTC----
T ss_pred CC-HHHHhhCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHH-----hCCCEEEECCchHhhcCC----
Confidence 11 0000 012322221 0111233344555555543 356999999999976221
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEE
Q 022155 160 MDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLF 239 (302)
Q Consensus 160 ~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~ 239 (302)
. .. ..+++..|.+++++++++||+++|...... +..+..|.+.++.+++
T Consensus 145 ~---~~----~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~------------------------~~~~~~~~~~~D~vi~ 193 (247)
T 2dr3_A 145 P---AM----ARSIILQLKRVLAGTGCTSIFVSQVSVGER------------------------GFGGPGVEHGVDGIIR 193 (247)
T ss_dssp G---GG----HHHHHHHHHHHHHHTTCEEEEEEECC----------------------------CCC-CCHHHHSSEEEE
T ss_pred H---HH----HHHHHHHHHHHHHHCCCeEEEEecCCCCcc------------------------cccccccceeEEEEEE
Confidence 1 11 224556777888899999999999865321 0112358898899999
Q ss_pred EEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCC--CceeeEEEecCcccccC
Q 022155 240 LSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA--DTSCEFEITREGVFGVE 301 (302)
Q Consensus 240 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~--~~~~~F~I~~~Gi~~~~ 301 (302)
|.+.+. . + ...|.++|.|+++.+ ...+.|.|+++||+.+.
T Consensus 194 L~~~~~----~-----~-------------~~~r~l~v~K~R~~~~~~~~~~f~i~~~Gi~~~~ 235 (247)
T 2dr3_A 194 LDLDEI----D-----G-------------ELKRSLIVWKMRGTSHSMRRHPFDITDKGIIVYP 235 (247)
T ss_dssp EEEEEE----T-----T-------------EEEEEEEEEEETTSCCCCBCEEEEEETTEEEECT
T ss_pred EEEEcc----C-----C-------------eeEEEEEEEECCCCCCCCceEEEEEcCCCEEEec
Confidence 998754 1 1 358999999999875 36799999999998764
No 19
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.92 E-value=8.8e-24 Score=220.76 Aligned_cols=228 Identities=24% Similarity=0.322 Sum_probs=176.6
Q ss_pred CCCCCccccCChhhHhhhC-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHH
Q 022155 14 PLTTEKCTVGCPIIDRCLG-GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQL 92 (302)
Q Consensus 14 ~~~~~~i~tG~~~LD~~L~-GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i 92 (302)
....+.+|||+..||.+|+ ||+|+|.++||+||+|||||||++++++.++ ..|+ .|+|||.|+.+++..++.+
T Consensus 1406 ~~~~~~i~tG~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~---~~g~---~~~~i~~e~~~~~~~~~~~ 1479 (1706)
T 3cmw_A 1406 SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGK---TCAFIDAEHALDPIYARKL 1479 (1706)
T ss_dssp GGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH---HTTC---CEEEECTTSCCCHHHHHHT
T ss_pred CCcCceecCCCHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHH---hcCC---eEEEEecCCCCCHHHHHHc
Confidence 4568999999999999999 6999999999999999999999999999887 6787 9999999999998876666
Q ss_pred HHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh-hccCCChhh----HHHHH
Q 022155 93 SHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR-SDFDNTMDD----LKKRS 167 (302)
Q Consensus 93 ~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~-~~~~~~~~~----~~~r~ 167 (302)
+ ..++++++.++.+.++.++++. .++.+ ..+++|||||++++.. .+..+++++ ++.|
T Consensus 1480 G---------v~~~~l~~~~p~~~e~~l~~~~---~~~~s-----~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar- 1541 (1706)
T 3cmw_A 1480 G---------VDIDNLLCSQPDTGEQALEICD---ALARS-----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAAR- 1541 (1706)
T ss_dssp T---------CCGGGCEEECCSSHHHHHHHHH---HHHHH-----TCCSEEEESCSTTCCCTTTTC-------CCHHHH-
T ss_pred C---------CCHHHeEEeCCCcHHHHHHHHH---HHHHc-----CCCCEEEEccHHhCCccccccccccccchhHHHH-
Confidence 5 3467899999999877655544 55554 6789999999999885 355544443 3444
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecCch
Q 022155 168 FLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFV 247 (302)
Q Consensus 168 ~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~~~ 247 (302)
+|.+.+++|...+++.++++|++||++.++..++| .+-+..+|.+.....+.|+-+.|....+
T Consensus 1542 -~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~~~~----------------~~~~~~~g~al~~~~~~r~~~~~~~~~~ 1604 (1706)
T 3cmw_A 1542 -MMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG----------------NPETTTGGNALKFYASVRLDIRRIGAVK 1604 (1706)
T ss_dssp -HHHHHHHHHHHHHHHHTCEEEEEECBC------------------------CCCCBSSCSHHHHHEEEEEEEEEEEEEE
T ss_pred -HHHHHHHHHHHHHHhCCcEEEEeeccccccceecC----------------CCccccCcceeeeeeeeeeeeeeccccc
Confidence 56677888888889999999999999998876553 2445678999999999999999987644
Q ss_pred hcccccccCCCCCCCCCCcccccceEEEEEEECCCC-CCceeeEEEe-cCccc
Q 022155 248 VRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHL-ADTSCEFEIT-REGVF 298 (302)
Q Consensus 248 ~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~-~~~~~~F~I~-~~Gi~ 298 (302)
++.++.| .+.+++|+|+.-. |...++|.|- ..||.
T Consensus 1605 --~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1641 (1706)
T 3cmw_A 1605 --EGENVVG--------------SETRVKVVKNKIAAPFKQAEFQILYGEGIN 1641 (1706)
T ss_dssp --ETTEEEE--------------EEEEEEEEEESSSCSCCEEEEEEETTTEEC
T ss_pred --cCCeeEe--------------eEEEEEEecccCCCCcceEEEEEEecCCcC
Confidence 3333444 6789999998877 6799999998 56775
No 20
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.91 E-value=1e-22 Score=173.76 Aligned_cols=212 Identities=21% Similarity=0.277 Sum_probs=141.3
Q ss_pred CccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhC
Q 022155 18 EKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFR 97 (302)
Q Consensus 18 ~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~ 97 (302)
+.++||++.||.++.||+++|+++.|+||||+|||||+.+++.... ..++ +|+|++.+.. .+++......+.
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~---~v~~~~~~~~--~~~~~~~~~~~~ 74 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGD---PCIYVTTEES--RDSIIRQAKQFN 74 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTC---CEEEEESSSC--HHHHHHHHHHTT
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCC---eEEEEEcccC--HHHHHHHHHHhc
Confidence 4789999999999989999999999999999999999999998764 3454 8999998764 444433332322
Q ss_pred CCCCCCCCCcEEEEeC-------------CCHHHHHHHHHHHHHHHHhccCCCCCee--EEEEechhhhhhhccCCChhh
Q 022155 98 PSNDHNPCDYIFVQSV-------------HSVDQLLDIMPKIESFIKNSSNSRLPIR--LIVIDSIAALFRSDFDNTMDD 162 (302)
Q Consensus 98 ~~~~~~~l~~i~~~~~-------------~~~~~l~~~l~~l~~~l~~~~~~~~~~~--lvVIDsi~~~~~~~~~~~~~~ 162 (302)
.........++.+... .+..++. ..+.+.+.. .+++ +||||+++.++..+ .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~llilDe~~~~~~~d----~-- 140 (235)
T 2w0m_A 75 WDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELV---NKVIEAKQK-----LGYGKARLVIDSVSALFLDK----P-- 140 (235)
T ss_dssp CCCGGGBTTTEEEEECCC----CTTBCSSCCHHHHH---HHHHHHHHH-----HCSSCEEEEEETGGGGSSSC----G--
T ss_pred chHHHHhhCCEEEEeccccccCceeeecCCCHHHHH---HHHHHHHHh-----hCCCceEEEEECchHhhcCC----H--
Confidence 1111001112222211 1334433 333333332 2458 99999999875322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEE
Q 022155 163 LKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSR 242 (302)
Q Consensus 163 ~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~ 242 (302)
.. ...++..|++++++++++||+++|.... ... .. +..|.+.++..++|.+
T Consensus 141 -~~----~~~~~~~l~~~~~~~~~~vi~~~h~~~~-~~~-------------------~~----~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 141 -AM----ARKISYYLKRVLNKWNFTIYATSQYAIT-TSQ-------------------AF----GFGVEHVADGIIRFRR 191 (235)
T ss_dssp -GG----HHHHHHHHHHHHHHTTEEEEEEEC-----------------------------------CHHHHCSEEEEEEE
T ss_pred -HH----HHHHHHHHHHHHHhCCCeEEEEeccCcc-ccc-------------------cc----ccchheeeeEEEEEEE
Confidence 11 2467788899999999999999998641 110 00 1457888899999988
Q ss_pred ecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCC--CceeeEEEecC-cccccCC
Q 022155 243 NEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA--DTSCEFEITRE-GVFGVER 302 (302)
Q Consensus 243 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~--~~~~~F~I~~~-Gi~~~~~ 302 (302)
... + + ...|.++|.|+++.+ ...+.|+|++. ||+.+.|
T Consensus 192 ~~~----~-----~-------------~~~r~l~v~K~r~~~~~~~~~~f~i~~~~Gi~~~~~ 232 (235)
T 2w0m_A 192 MIR----N-----G-------------ELHRYILIEKMRQTDHDKHVWEIDIVNGKGIVLKGR 232 (235)
T ss_dssp EEE----T-----T-------------EEEEEEEEEEETTCCCCCSCEEEEEETTTEEEEEEE
T ss_pred Eec----C-----C-------------cEEEEEEEEeccCCcccceeEEEEEcCCCCeEEecC
Confidence 654 1 1 368999999998875 36899999999 9987643
No 21
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.90 E-value=3.5e-22 Score=179.14 Aligned_cols=220 Identities=18% Similarity=0.164 Sum_probs=146.2
Q ss_pred CCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH--HHHHHH
Q 022155 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM--RRLHQL 92 (302)
Q Consensus 15 ~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~--~rl~~i 92 (302)
.....++||++.||.++ ||+++|+++.|+|+||+|||+|+++++.+++ ..|. +|+||+.|.+... .|+...
T Consensus 46 ~~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~~g~---~vl~~slE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 46 GNITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMS---DNDD---VVNLHSLEMGKKENIKRLIVT 118 (315)
T ss_dssp SSCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---TTTC---EEEEEESSSCHHHHHHHHHHH
T ss_pred CCCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HcCC---eEEEEECCCCHHHHHHHHHHH
Confidence 33678999999999999 8999999999999999999999999999886 3444 8999999954321 222222
Q ss_pred HHHhC------C---CCCCC-----------CCCcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCee--EEEEech
Q 022155 93 SHTFR------P---SNDHN-----------PCDYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIR--LIVIDSI 148 (302)
Q Consensus 93 ~~~~~------~---~~~~~-----------~l~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~--lvVIDsi 148 (302)
...+. . ..... .-.++++.... +..+ +...+..+..+ .+++ +||||++
T Consensus 119 ~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~---i~~~i~~l~~~-----~~~~~~lVVID~l 190 (315)
T 3bh0_A 119 AGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNY---IWSKTRQTKRK-----NPGKRVIVMIDYL 190 (315)
T ss_dssp HTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHH---HHHHHHHHHHT-----SSSCCEEEEEECG
T ss_pred HcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHH---HHHHHHHHHHh-----cCCCCeEEEEeCc
Confidence 11110 0 00000 01256665543 4444 44445555543 4568 9999999
Q ss_pred hhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC--
Q 022155 149 AALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL-- 226 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-- 226 (302)
+.+.... .. ..|.+.+..+++.|+.+|++++|+||+++|+........ ...|.+
T Consensus 191 ~~l~~~~-~~-----~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~------------------~~~p~l~d 246 (315)
T 3bh0_A 191 QLLEPAK-AN-----DSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQ------------------DKRPMLSD 246 (315)
T ss_dssp GGSBCSC-TT-----SCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSS------------------SCCCCGGG
T ss_pred hhcCCCC-CC-----CCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCC------------------CCCCCHHH
Confidence 9976321 10 124445789999999999999999999999976543211 112222
Q ss_pred ---CchhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeE
Q 022155 227 ---GIAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEF 290 (302)
Q Consensus 227 ---G~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F 290 (302)
...+.+.+++.++|.+.+.. ..+. .....|.+.|.|.++.+...+.+
T Consensus 247 lr~sg~ie~~aD~vi~L~r~~~~-~~~~----------------~~~~~~~l~v~K~R~G~~g~~~l 296 (315)
T 3bh0_A 247 LRESGQLEQDADIIEFLYRDDYY-DKES----------------ESKNIVEVIIAKHRDGPVGTVSL 296 (315)
T ss_dssp GTTTSHHHHHCSEEEEEEEHHHH-CTTC----------------TTTTEEEEEEEEETTSCCEEEEE
T ss_pred hhhhhhhHhhCCEEEEEeccccc-Cccc----------------cCCCcEEEEEECCcCCCCceEEE
Confidence 24688999999999986431 0000 00247899999999877665443
No 22
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.89 E-value=1.4e-21 Score=183.20 Aligned_cols=224 Identities=17% Similarity=0.232 Sum_probs=146.9
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHH-HHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLH-QLSH 94 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~-~i~~ 94 (302)
....++||++.||.++ ||+++|++++|+|+||+|||+||++++.+++. ..|. +|+||+.|.+ .+.+. .+..
T Consensus 179 ~~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~---~vl~~slE~~--~~~l~~R~~~ 250 (444)
T 2q6t_A 179 EVAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAAL--KEGV---GVGIYSLEMP--AAQLTLRMMC 250 (444)
T ss_dssp ----CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCC---CEEEEESSSC--HHHHHHHHHH
T ss_pred CCCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCC---eEEEEECCCC--HHHHHHHHHH
Confidence 3578999999999999 89999999999999999999999999999862 1244 8999999965 33322 2221
Q ss_pred HhCCCCCCCC---------------------CCcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhh
Q 022155 95 TFRPSNDHNP---------------------CDYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAAL 151 (302)
Q Consensus 95 ~~~~~~~~~~---------------------l~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~ 151 (302)
.......... ..++++.... +..++ ...+..+..+ .++++||||+++.+
T Consensus 251 ~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l---~~~~~~l~~~-----~~~~lIvID~l~~~ 322 (444)
T 2q6t_A 251 SEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEV---RARARRLVSQ-----NQVGLIIIDYLQLM 322 (444)
T ss_dssp HHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHH---HHHHHHHHHH-----SCCCEEEEECGGGC
T ss_pred HHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHH---HHHHHHHHHH-----cCCCEEEEcChhhc
Confidence 1111111100 1245655443 44444 4445555544 46799999999997
Q ss_pred hhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCc---
Q 022155 152 FRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGI--- 228 (302)
Q Consensus 152 ~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~--- 228 (302)
.... ... ....|.+.+..+++.|+.+|++++|+||+++|+....... ....|.++.
T Consensus 323 ~~~~-~~~--~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r------------------~~~~p~l~dlr~ 381 (444)
T 2q6t_A 323 SGPG-SGK--SGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEAR------------------PNKRPMLSDLRE 381 (444)
T ss_dssp BCC----------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSS------------------SSCSCCGGGGGG
T ss_pred CCCc-CCC--CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC------------------CCCCCChHHhcc
Confidence 5320 000 0123555678999999999999999999999997654321 123455443
Q ss_pred --hhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEe
Q 022155 229 --AWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEIT 293 (302)
Q Consensus 229 --~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~ 293 (302)
.|.+.++.+++|.+.+.. +. ++ .....|.+.|.|.++.|...+.+.-.
T Consensus 382 Sg~ie~~aD~vi~L~r~~~~----~~--------~~-----~~~~~~~l~i~K~R~g~~g~~~l~f~ 431 (444)
T 2q6t_A 382 SGSIEQDADLVMFIYRDEYY----NP--------HS-----EKAGIAEIIVGKQRNGPTGTVELQFH 431 (444)
T ss_dssp GCTTGGGCSEEEEEEEGGGT----CS--------SS-----SCCSEEEEEEEECSSSCCEEEEEEEE
T ss_pred hhHHHHhCCEEEEEeccccc----CC--------cC-----CCCCeEEEEEEecCCCCceEEEEEEE
Confidence 578899999999987541 00 00 01357999999999888765544433
No 23
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.87 E-value=2.3e-20 Score=174.37 Aligned_cols=223 Identities=17% Similarity=0.155 Sum_probs=149.5
Q ss_pred CCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH--HHHHHH
Q 022155 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM--RRLHQL 92 (302)
Q Consensus 15 ~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~--~rl~~i 92 (302)
.....++||++.||+++ ||+++|+++.|+|+||+|||+|++++|.+++ ..|. +|+||+.|.+... .|+...
T Consensus 175 ~~~~gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a---~~g~---~vl~fSlEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 175 GNITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMS---DNDD---VVNLHSLEMGKKENIKRLIVT 247 (444)
T ss_dssp SSCCSBCCSCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHH---HTTC---EEEEECSSSCTTHHHHHHHHH
T ss_pred cCCCCcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHH---HcCC---EEEEEECCCCHHHHHHHHHHH
Confidence 34678999999999999 6999999999999999999999999999986 3355 8999999976543 232221
Q ss_pred HHHhC-------C--CCCCC-----------CCCcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCee--EEEEech
Q 022155 93 SHTFR-------P--SNDHN-----------PCDYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIR--LIVIDSI 148 (302)
Q Consensus 93 ~~~~~-------~--~~~~~-----------~l~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~--lvVIDsi 148 (302)
...+. . ..... .-.++++.... +..++ ...+..+..+ .+++ +||||++
T Consensus 248 ~~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i---~~~ir~l~~~-----~~~~~~lIVID~L 319 (444)
T 3bgw_A 248 AGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYI---WSKTRQTKRK-----NPGKRVIVMIDYL 319 (444)
T ss_dssp HSCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHH---HHHHHHHHHH-----SCSSCEEEEEECS
T ss_pred HcCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHH---HHHHHHHHHH-----hCCCCeEEEEecH
Confidence 11000 0 11100 01356665543 44444 4445555544 4578 9999999
Q ss_pred hhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCC-
Q 022155 149 AALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALG- 227 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG- 227 (302)
+.+..... . ..|.+.+..+++.|+.+|++++|+||+++|+........ ...|.+.
T Consensus 320 q~~~~~~~-~-----~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~------------------~krp~lsd 375 (444)
T 3bgw_A 320 QLLEPAKA-N-----DSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQ------------------DKRPMLSD 375 (444)
T ss_dssp TTSBCSCS-S-----SCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSS------------------CCCCCGGG
T ss_pred HhccCCCC-C-----CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccC------------------CCCCchhh
Confidence 98753211 1 124445789999999999999999999999976543210 1223322
Q ss_pred ----chhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEEEe
Q 022155 228 ----IAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFEIT 293 (302)
Q Consensus 228 ----~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~I~ 293 (302)
..+.+.+++.++|.|.+.. ..+ + .....+.+.|.|.++.|...+.+...
T Consensus 376 lr~Sg~ieq~aD~Vi~L~r~~~~-~~~-----------~-----~~~~~~~l~i~K~R~G~~g~v~l~f~ 428 (444)
T 3bgw_A 376 LRESGQLEQDADIIEFLYRDDYY-DKE-----------S-----ESKNIVEVIIAKHRDGPVGTVSLAFI 428 (444)
T ss_dssp CCSCSHHHHHCSEEEECCBGGGT-CTT-----------C-----SSTTEEEEEEEEESSSCCEEEEEEEE
T ss_pred hhhhhhHHhhCCEEEEEeccccc-ccc-----------c-----cCCCeEEEEEEcccCCCCeEEEEEEE
Confidence 3688999999999986531 000 0 00247899999999887765544443
No 24
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.87 E-value=2.2e-20 Score=177.66 Aligned_cols=231 Identities=13% Similarity=0.071 Sum_probs=150.9
Q ss_pred CCCCcccc-CChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHH-HH
Q 022155 15 LTTEKCTV-GCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLH-QL 92 (302)
Q Consensus 15 ~~~~~i~t-G~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~-~i 92 (302)
.....++| |++.||.++ ||+++|++++|+|+||+|||+|++++|.+++. ..|. +|+||++|.+ .+++. .+
T Consensus 219 ~~~~~i~t~G~~~LD~~l-gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~---~vl~~s~E~s--~~~l~~r~ 290 (503)
T 1q57_A 219 EESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMVMSTFVRQQALQWGT--AMGK---KVGLAMLEES--VEETAEDL 290 (503)
T ss_dssp SCTTCSCCSSCTTHHHHH-CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTT--TSCC---CEEEEESSSC--HHHHHHHH
T ss_pred cccCCccccchhhhhHhh-cccCCCeEEEEeecCCCCchHHHHHHHHHHHH--hcCC---cEEEEeccCC--HHHHHHHH
Confidence 34678999 999999999 69999999999999999999999999999862 1254 8999999975 33322 22
Q ss_pred H-HHhCCCCC------------CC---------CCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhh
Q 022155 93 S-HTFRPSND------------HN---------PCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAA 150 (302)
Q Consensus 93 ~-~~~~~~~~------------~~---------~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~ 150 (302)
. ........ +. ...++++........+.+++..+..+..+ .++++||||+|+.
T Consensus 291 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~-----~~~~lvVID~l~~ 365 (503)
T 1q57_A 291 IGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSG-----LGCDVIILDHISI 365 (503)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHT-----TCCSEEEEECTTC
T ss_pred HHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHh-----cCCCEEEEccchh
Confidence 1 11111000 00 02456666543223344455566666554 4689999999998
Q ss_pred hhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCcccc-----
Q 022155 151 LFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPA----- 225 (302)
Q Consensus 151 ~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----- 225 (302)
+.... . . ..|.+.+.++++.|+.+|++++|+||+++|+.. ....... .....|.
T Consensus 366 l~~~~-~-~----~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~--------------~~~~~p~l~dlr 424 (503)
T 1q57_A 366 VVSAS-G-E----SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKAH--------------EEGRPVSITDLR 424 (503)
T ss_dssp CCSCC-S-C----CCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSSCS--------------TTCCCCCSSSCS
T ss_pred cCCCC-C-C----CCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccCcc--------------ccCCCCChhhhc
Confidence 65321 1 1 123445788999999999999999999999986 2211000 0011121
Q ss_pred CCchhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECC-CCCCcee---eEEEecCccccc
Q 022155 226 LGIAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAP-HLADTSC---EFEITREGVFGV 300 (302)
Q Consensus 226 lG~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~-~~~~~~~---~F~I~~~Gi~~~ 300 (302)
....|.+.+++.++|.+.+. ++ . ...|.+.|.|.+ ..+...+ .|......+.++
T Consensus 425 ~s~~ie~~aD~vi~l~r~~~----~~----~-------------~~~~~l~v~K~R~~G~~g~~~~l~f~~~~~~f~~~ 482 (503)
T 1q57_A 425 GSGALRQLSDTIIALERNQQ----GD----M-------------PNLVLVRILKCRFTGDTGIAGYMEYNKETGWLEPS 482 (503)
T ss_dssp SSSHHHHHCSEEEEEEECSS----SS----C-------------TTEEEEEEEEETTTCCCEEEEEEEECTTTCCEEEE
T ss_pred cchHhhecCcEEEEEEeCCc----CC----C-------------CCeEEEEEEeccCCCCCCceEEEEEEcCCceEecC
Confidence 13568999999999998754 00 0 247999999999 4665543 454444555443
No 25
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.85 E-value=3.8e-20 Score=173.83 Aligned_cols=221 Identities=15% Similarity=0.182 Sum_probs=144.9
Q ss_pred CCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHH-HH-
Q 022155 15 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLH-QL- 92 (302)
Q Consensus 15 ~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~-~i- 92 (302)
.....++||++.||+++ ||+++|+++.|+|+||+|||+|+++++.+++. ..|. +|+|++.|.+. +.+. .+
T Consensus 181 ~~~~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~---~Vl~~s~E~s~--~~l~~r~~ 252 (454)
T 2r6a_A 181 GEITGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNE---NVAIFSLEMSA--QQLVMRML 252 (454)
T ss_dssp CCCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSC---CEEEEESSSCH--HHHHHHHH
T ss_pred CCCCCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCC---cEEEEECCCCH--HHHHHHHH
Confidence 34678999999999998 89999999999999999999999999999852 1344 79999998653 2221 11
Q ss_pred HHHhCC---------CCCC-----------CCCCcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhh
Q 022155 93 SHTFRP---------SNDH-----------NPCDYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAA 150 (302)
Q Consensus 93 ~~~~~~---------~~~~-----------~~l~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~ 150 (302)
...... .... ....++++.... +..++. ..+..+... .++++||||+++.
T Consensus 253 ~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~---~~~~~l~~~-----~~~~livID~l~~ 324 (454)
T 2r6a_A 253 CAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR---AKCRRLKQE-----SGLGMIVIDYLQL 324 (454)
T ss_dssp HHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH---HHHHHHHTT-----TCCCEEEEECGGG
T ss_pred HHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH---HHHHHHHHH-----cCCCEEEEccHHH
Confidence 111110 0000 001245555442 444443 444444433 4679999999999
Q ss_pred hhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCC---
Q 022155 151 LFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALG--- 227 (302)
Q Consensus 151 ~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG--- 227 (302)
+....... ..|.+.+..+++.|+.+|++++++||+++|+....... ....|.++
T Consensus 325 ~~~~~~~~-----~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~------------------~~~~p~lsdlr 381 (454)
T 2r6a_A 325 IQGSGRSK-----ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQR------------------QDKRPMMSDIR 381 (454)
T ss_dssp SCCSCC---------CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---------------------CCCTHHHH
T ss_pred hccCCCCC-----CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC------------------CCCCCcHHHhh
Confidence 76432110 12344578999999999999999999999997654421 12234432
Q ss_pred --chhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCCCceeeEE
Q 022155 228 --IAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLADTSCEFE 291 (302)
Q Consensus 228 --~~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~~~~~F~ 291 (302)
..+.+.++..++|.+.+... .+. .....|.+.|.|.++.|...+.+.
T Consensus 382 ~Sg~ie~~aD~vi~l~r~~~~~-~~~----------------~~~~~~~l~i~K~R~G~~g~v~l~ 430 (454)
T 2r6a_A 382 ESGSIEQDADIVAFLYRDDYYN-KDS----------------ENKNIIEIIIAKQRNGPVGTVQLA 430 (454)
T ss_dssp TTCSHHHHCSEEEEEEETTC------------------------CCEEEEEEEEESSSCCEEEEEE
T ss_pred ccchhHhhCCEEEEEecccccC-ccc----------------CCCCeEEEEEecccCCCCeEEEEE
Confidence 35788999999999865410 000 002578999999998876654443
No 26
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.83 E-value=3.6e-19 Score=153.53 Aligned_cols=220 Identities=17% Similarity=0.207 Sum_probs=132.0
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHT 95 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~ 95 (302)
...+++||++.||.+|+||+++|+++.|+||+|||||||+.+++....++ .++ +++|++.+.. ...+.+....
T Consensus 8 ~~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~---~~~~~~~~~~--~~~~~~~~~~ 80 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGE---PGVFVTLEER--ARDLRREMAS 80 (251)
T ss_dssp CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCC---CEEEEESSSC--HHHHHHHHHT
T ss_pred ccceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCC---eEEEEEccCC--HHHHHHHHHH
Confidence 46789999999999999999999999999999999999999998544212 233 6899997754 2333332222
Q ss_pred hCCCCCC-CCCCcEEEEeC---------------CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCC
Q 022155 96 FRPSNDH-NPCDYIFVQSV---------------HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNT 159 (302)
Q Consensus 96 ~~~~~~~-~~l~~i~~~~~---------------~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~ 159 (302)
+...... ....++.+... ....++.+....+...+.. .+++++++|++++......+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~p~~lilDep~~~ld~~~d-- 153 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKA-----INAKRLVIDSIPSIALRLEE-- 153 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHH-----TTCSEEEEECHHHHHHHSSS--
T ss_pred cCCChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHh-----hCCCEEEEccHHHHHhhcCC--
Confidence 2110000 00011111110 0011123334444444443 35699999999997742211
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhc-ceEE
Q 022155 160 MDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCV-NSRL 238 (302)
Q Consensus 160 ~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~-~~rl 238 (302)
. ....+ .+...++.+ ++.++|||+++|........ ..+....+.+ +..+
T Consensus 154 ~---~~~~~---~l~~l~~~l-~~~g~tii~vtH~~~~~~~~-----------------------~~~~~i~~~~aD~vi 203 (251)
T 2ehv_A 154 E---RKIRE---VLLKLNTIL-LEMGVTTILTTEAPDPQHGK-----------------------LSRYGIEEFIARGVI 203 (251)
T ss_dssp G---GGHHH---HHHHHHHHH-HHHCCEEEEEECCC----CC-----------------------SSSSSCGGGGCSEEE
T ss_pred H---HHHHH---HHHHHHHHH-HHCCCeEEEEECCCCCCccc-----------------------ccccChhhEeeeEEE
Confidence 1 11111 223333333 45699999999986543100 0111223455 8888
Q ss_pred EEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCC--CceeeEEEecCcccccC
Q 022155 239 FLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA--DTSCEFEITREGVFGVE 301 (302)
Q Consensus 239 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~--~~~~~F~I~~~Gi~~~~ 301 (302)
+|.+.+. + + ...|.+++.|.++.+ ....+|+|++.||+.+.
T Consensus 204 ~l~~~~~----~-----~-------------~~~r~l~i~K~r~~~~~~~~~~~~i~~~Gi~v~~ 246 (251)
T 2ehv_A 204 VLDLQEK----N-----I-------------ELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYP 246 (251)
T ss_dssp EEEEEEC----S-----S-------------SEEEEEEEEEETTCCCCCBEEEEEEETTEEEECC
T ss_pred EEeeecc----C-----C-------------eeEEEEEEEEccCCCcCCceEEEEECCCCeEEcC
Confidence 8887654 1 1 478999999988775 46799999999998764
No 27
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.82 E-value=6.6e-20 Score=164.74 Aligned_cols=194 Identities=18% Similarity=0.199 Sum_probs=129.8
Q ss_pred CCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH--HHHH
Q 022155 13 NPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM--RRLH 90 (302)
Q Consensus 13 ~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~--~rl~ 90 (302)
.......++||++.||+++ ||+++|+++.|+|+||+|||+|++++|.+++ ..|. +|+||+.|.+... .|+.
T Consensus 22 ~~~~~~gi~TG~~~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~~g~---~Vl~fSlEms~~ql~~Rll 94 (338)
T 4a1f_A 22 GSLEVTGIPTGFVQLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---NDDR---GVAVFSLEMSAEQLALRAL 94 (338)
T ss_dssp TTTCCCSBCCSCHHHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---HTTC---EEEEEESSSCHHHHHHHHH
T ss_pred CCCCcCcccCCChHHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HcCC---eEEEEeCCCCHHHHHHHHH
Confidence 3445789999999999998 6999999999999999999999999999986 3455 8999999965322 2221
Q ss_pred HHHHHh-------CCCCCC---------C--CCCcEEEEeCC--CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhh
Q 022155 91 QLSHTF-------RPSNDH---------N--PCDYIFVQSVH--SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAA 150 (302)
Q Consensus 91 ~i~~~~-------~~~~~~---------~--~l~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~ 150 (302)
...... ...... . .-.++++.... +..++. ..+..+... ..++++||||+|+.
T Consensus 95 s~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~---~~ir~l~~~----~gg~~lIVIDyLql 167 (338)
T 4a1f_A 95 SDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIR---LQLRKLKSQ----HKELGIAFIDYLQL 167 (338)
T ss_dssp HHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHH---HHHHHHHHH----CTTEEEEEEEEEEC
T ss_pred HHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHH---HHHHHHHHh----cCCCCEEEEechHH
Confidence 111000 000000 0 00246665443 444444 444444443 22689999999998
Q ss_pred hhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC----
Q 022155 151 LFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL---- 226 (302)
Q Consensus 151 ~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l---- 226 (302)
+..... ...|.+.+..+++.|+.||++++|+||+++|+........ ...|.+
T Consensus 168 m~~~~~------~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~------------------dkrP~lsDLr 223 (338)
T 4a1f_A 168 MSGSKA------TKERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRD------------------DKRPILSDIK 223 (338)
T ss_dssp CCTHHH------HHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSS------------------SCSCCGGGSE
T ss_pred hcCCCC------CCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccc------------------cCCCChHhcc
Confidence 754221 1234444789999999999999999999999987654321 112221
Q ss_pred -CchhhhhcceEEEEEEec
Q 022155 227 -GIAWANCVNSRLFLSRNE 244 (302)
Q Consensus 227 -G~~w~~~~~~rl~l~~~~ 244 (302)
.-++.+-++..++|.|.+
T Consensus 224 eSg~IeqdAD~Vl~l~R~~ 242 (338)
T 4a1f_A 224 DSGGIEQDADIVLFLYRGY 242 (338)
T ss_dssp ETTEECCCCSEEEEEECHH
T ss_pred cchhhhhhCcEEEEEecch
Confidence 234667789999999975
No 28
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.81 E-value=1.8e-18 Score=153.54 Aligned_cols=229 Identities=14% Similarity=0.118 Sum_probs=138.2
Q ss_pred CCCCcccc-CChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH-HHH
Q 022155 15 LTTEKCTV-GCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL-HQL 92 (302)
Q Consensus 15 ~~~~~i~t-G~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl-~~i 92 (302)
.....++| |++.||.++ +|+++|+++.|+|+||+|||||+++++..... ..|+ +|+|++.+.+ ...+ ..+
T Consensus 12 ~~~~~i~t~g~~~Ld~i~-~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~---~v~~~~~e~~--~~~~~~r~ 83 (296)
T 1cr0_A 12 EESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGK---KVGLAMLEES--VEETAEDL 83 (296)
T ss_dssp CCCCCBCCCSCTTHHHHH-CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCC---CEEEEESSSC--HHHHHHHH
T ss_pred CCcCCcccCCHHHHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCC---eEEEEeCcCC--HHHHHHHH
Confidence 34678999 999999997 89999999999999999999999999998741 2354 7999998853 3222 222
Q ss_pred HHHhCCCCCC--------------------CC--CCcEEEEeC---CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEec
Q 022155 93 SHTFRPSNDH--------------------NP--CDYIFVQSV---HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDS 147 (302)
Q Consensus 93 ~~~~~~~~~~--------------------~~--l~~i~~~~~---~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDs 147 (302)
.......... .. ..++.+... .+..++.+ .+..... ..++++||||+
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~---~~~a~~~-----~~~p~llilDe 155 (296)
T 1cr0_A 84 IGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLA---KLAYMRS-----GLGCDVIILDH 155 (296)
T ss_dssp HHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHH---HHHHHHH-----TTCCSEEEEEE
T ss_pred HHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHH---HHHHHHH-----hcCCCEEEEcC
Confidence 2221111100 01 124555433 34555433 3332222 13569999999
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCC
Q 022155 148 IAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALG 227 (302)
Q Consensus 148 i~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG 227 (302)
++.+.... . . ..+...+..+++.|++++++++++||+++|... ...... ......|.++
T Consensus 156 pt~~~~~~-~----~-~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r-~~~~~~--------------~~~~~~p~l~ 214 (296)
T 1cr0_A 156 ISIVVSAS-G----E-SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKA--------------HEEGRPVSIT 214 (296)
T ss_dssp EC-----------------CHHHHHHHHHHHHHHHHHCCEEEEEEECC--------------------------------
T ss_pred ccccCCCC-C----C-CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCc-cccccc--------------cccCCCCCHH
Confidence 99976321 0 0 111122568889999999999999999999863 110000 0011223332
Q ss_pred c-----hhhhhcceEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCC-CCCce---eeEEEecCccc
Q 022155 228 I-----AWANCVNSRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPH-LADTS---CEFEITREGVF 298 (302)
Q Consensus 228 ~-----~w~~~~~~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~-~~~~~---~~F~I~~~Gi~ 298 (302)
. .+.+.++..++|.+.... + + ...|.+.|.|.++ .+... +.|.+...|+.
T Consensus 215 dl~~s~~i~~~aD~vi~L~~~~~~---~-----~-------------~~~~~l~i~K~R~~g~~g~~~~~~f~~~~~~f~ 273 (296)
T 1cr0_A 215 DLRGSGALRQLSDTIIALERNQQG---D-----M-------------PNLVLVRILKCRFTGDTGIAGYMEYNKETGWLE 273 (296)
T ss_dssp CCC---CHHHHCSEEEEEEEC----------------------------CEEEEEEEETTTCCCEEEEEEEECTTTCCEE
T ss_pred HhcccHHhHhhCcEEEEEecCccc---C-----C-------------CCeEEEEEEccccCCCCCceEEEEEEcCccEEe
Confidence 2 677889999999886430 0 0 2479999999995 66543 57888889998
Q ss_pred ccC
Q 022155 299 GVE 301 (302)
Q Consensus 299 ~~~ 301 (302)
+++
T Consensus 274 ~~~ 276 (296)
T 1cr0_A 274 PSS 276 (296)
T ss_dssp ECC
T ss_pred cCC
Confidence 764
No 29
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.79 E-value=4.4e-19 Score=156.18 Aligned_cols=158 Identities=20% Similarity=0.309 Sum_probs=101.4
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCC--------CCCeEEEEeCCCCCCH--
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGG--------LSASSLYLHTEFPFPM-- 86 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg--------~~~~vlyid~e~~~~~-- 86 (302)
.+.++||++.||.++ ||+++|++++|+||||+|||||+++++..++ .|. ...+|+|++.|.....
T Consensus 10 ~~~i~tg~~~ld~~l-ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~~g~~~~~~~~v~~~~~e~~~~~~~ 84 (279)
T 1nlf_A 10 LEAFAAAPPPLDYVL-PNMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDLLEVGELPTGPVIYLPAEDPPTAIH 84 (279)
T ss_dssp HHHHHSCCCCCCEEE-TTEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCTTCCCCCCCCCEEEEESSSCHHHHH
T ss_pred HHHhcCCCCChheeE-CCccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCcCCCccCCCccEEEEECCCCHHHHH
Confidence 567899999999999 5999999999999999999999999998764 120 0137999999976432
Q ss_pred HHHHHHHHHhCCCCCCCCCCcEEEEeC-------CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCC
Q 022155 87 RRLHQLSHTFRPSNDHNPCDYIFVQSV-------HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNT 159 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~~~l~~i~~~~~-------~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~ 159 (302)
.|+..+...+........++++.+... .+..+ +..+..++. ++++||||++++++..+. +
T Consensus 85 ~r~~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~----~~~i~~l~~-------~~~livlDe~~~~~~~d~-~- 151 (279)
T 1nlf_A 85 HRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEW----FDGLKRAAE-------GRRLMVLDTLRRFHIEEE-N- 151 (279)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHH----HHHHHHHHT-------TCSEEEEECGGGGCCSCT-T-
T ss_pred HHHHHHHhhcChhhhhhccCceEEeecCCCCcccCCHHH----HHHHHHhcC-------CCCEEEECCHHHhcCCCc-C-
Confidence 234333321110000011234444322 12222 233344442 369999999999764321 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccC
Q 022155 160 MDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLM 198 (302)
Q Consensus 160 ~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~ 198 (302)
.. ..+..+++.|+.++++.+++||+++|.....
T Consensus 152 --~~----~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 152 --AS----GPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp --CH----HHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred --ch----HHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 11 1246778999999999999999999987543
No 30
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.77 E-value=8.3e-18 Score=160.70 Aligned_cols=213 Identities=18% Similarity=0.184 Sum_probs=135.9
Q ss_pred CCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHH
Q 022155 16 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHT 95 (302)
Q Consensus 16 ~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~ 95 (302)
....++||++.||.+|+||+++|+++.|+|+||+|||||+++++.... ..|+ +++|+..+.+ ...+......
T Consensus 259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~G~---~vi~~~~ee~--~~~l~~~~~~ 330 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC---ANKE---RAILFAYEES--RAQLLRNAYS 330 (525)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---TTTC---CEEEEESSSC--HHHHHHHHHT
T ss_pred ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hCCC---CEEEEEEeCC--HHHHHHHHHH
Confidence 467889999999999999999999999999999999999999998864 3455 7899998865 3333332222
Q ss_pred hCCCCCCC--CCCcEEEEeC----CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHH
Q 022155 96 FRPSNDHN--PCDYIFVQSV----HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFL 169 (302)
Q Consensus 96 ~~~~~~~~--~l~~i~~~~~----~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~ 169 (302)
+... ... ....+.+... .+..+....+. ...+. .+++++|||+++.+... .+ +.+.|
T Consensus 331 ~g~~-~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~--a~~l~------~~p~llilDp~~~Ld~~-~~----~~~~~--- 393 (525)
T 1tf7_A 331 WGMD-FEEMERQNLLKIVCAYPESAGLEDHLQIIK--SEIND------FKPARIAIDSLSALARG-VS----NNAFR--- 393 (525)
T ss_dssp TSCC-HHHHHHTTSEEECCCCGGGSCHHHHHHHHH--HHHHT------TCCSEEEEECHHHHTSS-SC----HHHHH---
T ss_pred cCCC-HHHHHhCCCEEEEEeccccCCHHHHHHHHH--HHHHh------hCCCEEEEcChHHHHhh-CC----hHHHH---
Confidence 2110 000 0112222211 13333222211 12221 35699999988887643 11 11112
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccC-CchhhhhcceEEEEEEecCchh
Q 022155 170 FFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPAL-GIAWANCVNSRLFLSRNEDFVV 248 (302)
Q Consensus 170 l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-G~~w~~~~~~rl~l~~~~~~~~ 248 (302)
..+...++.+ ++.+++||+++|........ +. +....++++..++|.+.+.
T Consensus 394 -~~i~~ll~~l-~~~g~tvilvsh~~~~~~~~-----------------------~~~~~~l~~~~D~vi~L~~ge~--- 445 (525)
T 1tf7_A 394 -QFVIGVTGYA-KQEEITGLFTNTSDQFMGAH-----------------------SITDSHISTITDTIILLQYVEI--- 445 (525)
T ss_dssp -HHHHHHHHHH-HHTTCEEEEEEECSSSSCCC-----------------------SSCSSCCTTTCSEEEEEEEEEE---
T ss_pred -HHHHHHHHHH-HhCCCEEEEEECcccccCcc-----------------------cccCcccceeeeEEEEEEEEEe---
Confidence 2333444443 46799999999986432210 00 1334577888998877653
Q ss_pred cccccccCCCCCCCCCCcccccceEEEEEEECCCCCC--ceeeEEEecCccccc
Q 022155 249 RENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLAD--TSCEFEITREGVFGV 300 (302)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~~--~~~~F~I~~~Gi~~~ 300 (302)
+ + ...|.++|+|.++.+. ...+|+|+++||+..
T Consensus 446 -~-----~-------------~~~R~l~v~K~R~~~~~~~~~~f~i~~~Gi~v~ 480 (525)
T 1tf7_A 446 -R-----G-------------EMSRAINVFKMRGSWHDKAIREFMISDKGPDIK 480 (525)
T ss_dssp -T-----T-------------EEEEEEEEEEESSSCCCCBCEEEEECSSCEEEE
T ss_pred -C-----C-------------EEEEEEEEEECCCCCCCCCEEEEEEcCCCEEEe
Confidence 1 1 4789999999998864 578999999999843
No 31
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.69 E-value=1.4e-15 Score=131.54 Aligned_cols=69 Identities=9% Similarity=0.051 Sum_probs=58.6
Q ss_pred ccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHH
Q 022155 19 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHT 95 (302)
Q Consensus 19 ~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~ 95 (302)
.++||++.||.+|+||+++|.++.|.|.||+|||+|++|++.+.+ ..|. +|+|+..+.+ +..+..-+..
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~---~~Ge---~~~~~~~~e~--~~~l~~~~~~ 70 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKL---KSDN---LVGMFSISYP--LQLIIRILSR 70 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHH---HTTC---EEEEEECSSC--HHHHHHHHHH
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHH---HCCC---cEEEEEEeCC--HHHHHHHHHH
Confidence 579999999999999999999999999999999999999999876 6677 9999998865 3444333333
No 32
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.61 E-value=3.7e-14 Score=135.43 Aligned_cols=225 Identities=17% Similarity=0.225 Sum_probs=134.2
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
|...++. ....++++|++.||.+..|++++|+++.|+||||||||||+.+++.+..++ .+. +++||+.+.. .
T Consensus 9 ~~~~~~~-~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~---g~i~v~g~~~--~ 80 (525)
T 1tf7_A 9 PNNNSEH-QAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDE---PGVFVTFEET--P 80 (525)
T ss_dssp -----CC-SSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCC---CEEEEESSSC--H
T ss_pred CCCCccc-cccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCC---CEEEEEEeCC--H
Confidence 3444444 346789999999999987899999999999999999999999964332222 132 5899998762 3
Q ss_pred HHHHHHHHHhCCCCCC-CCCCcEEEEeCC---------CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhcc
Q 022155 87 RRLHQLSHTFRPSNDH-NPCDYIFVQSVH---------SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDF 156 (302)
Q Consensus 87 ~rl~~i~~~~~~~~~~-~~l~~i~~~~~~---------~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~ 156 (302)
..+.+....+.....+ ....++...... ....+.+.+.++...+.. ...++|+||++++.....
T Consensus 81 ~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~-----g~~~~lilDe~t~~~~~~- 154 (525)
T 1tf7_A 81 QDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQK-----YRARRVSIDSVTSVFQQY- 154 (525)
T ss_dssp HHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHH-----HTCSEEEEECSTTTSTTT-
T ss_pred HHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHH-----cCCCEEEECCHHHHHHhc-
Confidence 3333333332211000 000123332211 122344555555555543 345999999999865431
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCCCCCCCccccCCccccCCCCCccccCCchh-hhhcc
Q 022155 157 DNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAW-ANCVN 235 (302)
Q Consensus 157 ~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w-~~~~~ 235 (302)
..+...| ..+...++.+.+ .++|||+++|..+..... ....+ .+++|
T Consensus 155 ---~lD~~~~----~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~------------------------~~~~i~~~laD 202 (525)
T 1tf7_A 155 ---DASSVVR----RELFRLVARLKQ-IGATTVMTTERIEEYGPI------------------------ARYGVEEFVSD 202 (525)
T ss_dssp ---CCHHHHH----HHHHHHHHHHHH-HTCEEEEEEECSSSSSCS------------------------STTSCHHHHCS
T ss_pred ---CCHHHHH----HHHHHHHHHHHH-CCCEEEEEecCCCCcccc------------------------ccccceeeeee
Confidence 0122332 244455555554 699999999986533210 01111 34467
Q ss_pred eEEEEEEecCchhcccccccCCCCCCCCCCcccccceEEEEEEECCCCC--CceeeEEEecCcccc
Q 022155 236 SRLFLSRNEDFVVRENQMVNGGVGGSGSEDFVCRRTRRSLHVVFAPHLA--DTSCEFEITREGVFG 299 (302)
Q Consensus 236 ~rl~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~R~~~v~ks~~~~--~~~~~F~I~~~Gi~~ 299 (302)
..++|..... + | ...|.+.+.|.+..+ ....+|.|++.|+..
T Consensus 203 ~vi~L~~~~~----~-----G-------------~~~r~l~~~k~r~~~~~~~~~~~~i~~~gi~v 246 (525)
T 1tf7_A 203 NVVILRNVLE----G-----E-------------RRRRTLEILKLRGTSHMKGEYPFTITDHGINI 246 (525)
T ss_dssp EEEEEEEECS----T-----T-------------CCEEEEEEEEETTSCCCCSEEEEEEETTEEEE
T ss_pred EEEEEEEEcc----C-----C-------------ceeEEEEEEECCCCCCCCceEEEEEcCCCEEE
Confidence 8888876543 1 2 467889998866553 456899999988864
No 33
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.55 E-value=3.7e-15 Score=131.93 Aligned_cols=133 Identities=22% Similarity=0.243 Sum_probs=89.6
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHh
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTF 96 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~ 96 (302)
...++||++.||.+| ||+++|.+++|+||||+|||+||++++.. .|+ +|+|++.+...+ +
T Consensus 103 ~~~i~TGi~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~------~G~---~VlyIs~~~eE~----------v 162 (331)
T 2vhj_A 103 TGELVGCSPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEA------LGG---KDKYATVRFGEP----------L 162 (331)
T ss_dssp STTCCSBCCEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHH------HHT---TSCCEEEEBSCS----------S
T ss_pred hhccccCcHHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHh------CCC---CEEEEEecchhh----------h
Confidence 345789999999999 99999999999999999999999999876 233 789999831111 0
Q ss_pred CCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHH
Q 022155 97 RPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGM 176 (302)
Q Consensus 97 ~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~ 176 (302)
...+ .+.+ ..+..+.+.+.+ . ++||||+++++........ ......+.+++++..
T Consensus 163 ------~~~~-------~~le---~~l~~i~~~l~~-----~--~LLVIDsI~aL~~~~~~~s--~~G~v~~~lrqlL~~ 217 (331)
T 2vhj_A 163 ------SGYN-------TDFN---VFVDDIARAMLQ-----H--RVIVIDSLKNVIGAAGGNT--TSGGISRGAFDLLSD 217 (331)
T ss_dssp ------TTCB-------CCHH---HHHHHHHHHHHH-----C--SEEEEECCTTTC-------------CCHHHHHHHHH
T ss_pred ------hhhh-------cCHH---HHHHHHHHHHhh-----C--CEEEEeccccccccccccc--ccchHHHHHHHHHHH
Confidence 0111 2333 344445555554 2 3999999999764321100 001112346788888
Q ss_pred HHHHHHHcCcEEEEEecc
Q 022155 177 LKAMAVGFGLAVLVTNQV 194 (302)
Q Consensus 177 L~~la~~~~~~viv~n~~ 194 (302)
|..++++.++++|++++.
T Consensus 218 L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 218 IGAMAASRGCVVIASLNP 235 (331)
T ss_dssp HHHHHHHHTCEEEEECCC
T ss_pred HHHHHhhCCCEEEEEeCC
Confidence 999999999999997663
No 34
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.71 E-value=1.3e-08 Score=92.05 Aligned_cols=165 Identities=14% Similarity=0.235 Sum_probs=89.4
Q ss_pred cccCCCCCCccccC---ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CC
Q 022155 10 LLDNPLTTEKCTVG---CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PF 84 (302)
Q Consensus 10 l~~~~~~~~~i~tG---~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~ 84 (302)
+++.+.....+..+ ...|+.+ +--+++|+++.|.||+|||||||+..++... ++.. .-++++... ..
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~v-sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~--~p~~-----G~I~i~G~~i~~~ 95 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNV-SLHVPAGQIYGVIGASGAGKSTLIRCVNLLE--RPTE-----GSVLVDGQELTTL 95 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSS--CCSE-----EEEEETTEECSSC
T ss_pred eEEEEeEEEEeCCCCCCeEEEEee-EEEEcCCCEEEEEcCCCchHHHHHHHHhcCC--CCCc-----eEEEECCEECCcC
Confidence 45544444444432 3456665 5578999999999999999999998887653 2222 356776553 23
Q ss_pred CHHHHHHHHHH----hCCCC---CCCCCCcEEEE---eCCCHHHH----HHHHHHH--HHHHHhc---------------
Q 022155 85 PMRRLHQLSHT----FRPSN---DHNPCDYIFVQ---SVHSVDQL----LDIMPKI--ESFIKNS--------------- 133 (302)
Q Consensus 85 ~~~rl~~i~~~----~~~~~---~~~~l~~i~~~---~~~~~~~l----~~~l~~l--~~~l~~~--------------- 133 (302)
+...+..+... ++... ..++.+|+.+. ......+. .+++..+ .......
T Consensus 96 ~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 96 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp CHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred CHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 44433333222 22111 11223333221 00111111 1122111 0000000
Q ss_pred -cCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 134 -SNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 134 -~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
+... +++++++|+.++-+ |...+ ..+...|+++.++.++|||+++|-..
T Consensus 176 rAL~~-~P~lLLlDEPTs~L---------D~~~~----~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 176 RALAS-NPKVLLCDQATSAL---------DPATT----RSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp HHTTT-CCSEEEEESTTTTS---------CHHHH----HHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred HHHhc-CCCEEEEECCCccC---------CHHHH----HHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 1222 45999999998854 22222 36677888888889999999999643
No 35
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.67 E-value=4.4e-08 Score=79.72 Aligned_cols=130 Identities=16% Similarity=0.078 Sum_probs=70.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEE-eCCCHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQ-SVHSVDQ 118 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~-~~~~~~~ 118 (302)
++.|.|++|||||+||.+++.. |. +++|++|...++.+..+++...... .+ ...... .+.+..+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-------~~---~~~yiaT~~~~d~e~~~rI~~h~~~-R~----~~w~tiE~p~~l~~ 65 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-------AP---QVLYIATSQILDDEMAARIQHHKDG-RP----AHWRTAECWRHLDT 65 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-------CS---SEEEEECCCC------CHHHHHHHT-SC----TTEEEECCSSCGGG
T ss_pred CEEEECCCCCcHHHHHHHHHhc-------CC---CeEEEecCCCCCHHHHHHHHHHHhc-CC----CCcEEEEcHhhHHH
Confidence 4789999999999999998632 33 7999999887777665555544221 11 122222 2233222
Q ss_pred HHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCC-----Ch--hhHHH-HHHHHHHHHHHHHHHHHHcCcEEEE
Q 022155 119 LLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDN-----TM--DDLKK-RSFLFFKISGMLKAMAVGFGLAVLV 190 (302)
Q Consensus 119 l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~-----~~--~~~~~-r~~~l~~l~~~L~~la~~~~~~viv 190 (302)
.+.. . ..+.+.|+||+++..+...+.. .. .+... ...+..++...+..+.+...-.|+|
T Consensus 66 ---~l~~----~------~~~~~~VLvDclt~wl~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~vlV 132 (180)
T 1c9k_A 66 ---LITA----D------LAPDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLV 132 (180)
T ss_dssp ---TSCT----T------SCTTCEEEEECHHHHHHHHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ---HHHh----h------cccCCeEEEcCHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 2111 1 1123799999999988654421 10 01110 1112234445566666666678888
Q ss_pred Eeccccc
Q 022155 191 TNQVVDL 197 (302)
Q Consensus 191 ~n~~~~~ 197 (302)
+|++...
T Consensus 133 sNEVG~G 139 (180)
T 1c9k_A 133 TNEVGMG 139 (180)
T ss_dssp CCCCCSS
T ss_pred EccccCC
Confidence 8888543
No 36
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.65 E-value=2.9e-09 Score=93.05 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=43.3
Q ss_pred cccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 10 LLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 10 l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+++.+.....+..+...|+.+ +--+++|+++.|.||+|||||||+..++... ++.. ..++++...
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~i-sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~--~p~~-----G~I~~~G~~ 71 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGI-NMNIKRGEVTAILGGNGVGKSTLFQNFNGIL--KPSS-----GRILFDNKP 71 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEE-EEEEETTSEEEEECCTTSSHHHHHHHHTTSS--CCSE-----EEEEETTEE
T ss_pred EEEEEEEEEEECCCCeEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCC--CCCC-----eEEEECCEE
Confidence 344444433443333466665 5578999999999999999999998887653 3222 357777553
No 37
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.63 E-value=6.9e-08 Score=82.34 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=35.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+++.|+||+|||||||+..++... ++.. ..++++..
T Consensus 20 ~L~~i-sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~--~p~~-----G~I~~~g~ 67 (235)
T 3tif_A 20 ALKNV-NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD--KPTE-----GEVYIDNI 67 (235)
T ss_dssp EEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSS--CCSE-----EEEEETTE
T ss_pred eEEee-eEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCc-----eEEEECCE
Confidence 45554 4568999999999999999999998887653 3222 34677654
No 38
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.59 E-value=5e-08 Score=82.41 Aligned_cols=119 Identities=14% Similarity=0.093 Sum_probs=70.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH-HHHHHHhCCCCCCCCCCcEEEEeCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL-HQLSHTFRPSNDHNPCDYIFVQSVH 114 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl-~~i~~~~~~~~~~~~l~~i~~~~~~ 114 (302)
.+|.++.++|++|+||||++++++.++. ..|. +|+++..... . |. .++...+. .....+. ..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~---kVli~~~~~d--~-r~~~~i~srlG-----~~~~~~~---~~ 72 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE---YADV---KYLVFKPKID--T-RSIRNIQSRTG-----TSLPSVE---VE 72 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTC---CEEEEEECCC--G-GGCSSCCCCCC-----CSSCCEE---ES
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH---hcCC---EEEEEEeccC--c-hHHHHHHHhcC-----CCccccc---cC
Confidence 5689999999999999999999999875 4454 7888864432 1 11 01111111 1112222 12
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecc
Q 022155 115 SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194 (302)
Q Consensus 115 ~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~ 194 (302)
...++ +..+.+.+. ..++++|+||+++.+.. .++..|+.++. .+++||++.+.
T Consensus 73 ~~~~i---~~~i~~~~~-----~~~~dvViIDEaQ~l~~------------------~~ve~l~~L~~-~gi~Vil~Gl~ 125 (223)
T 2b8t_A 73 SAPEI---LNYIMSNSF-----NDETKVIGIDEVQFFDD------------------RICEVANILAE-NGFVVIISGLD 125 (223)
T ss_dssp STHHH---HHHHHSTTS-----CTTCCEEEECSGGGSCT------------------HHHHHHHHHHH-TTCEEEEECCS
T ss_pred CHHHH---HHHHHHHhh-----CCCCCEEEEecCccCcH------------------HHHHHHHHHHh-CCCeEEEEecc
Confidence 32333 233332222 24579999999987321 12344455565 49999999998
Q ss_pred cccC
Q 022155 195 VDLM 198 (302)
Q Consensus 195 ~~~~ 198 (302)
.+-.
T Consensus 126 ~df~ 129 (223)
T 2b8t_A 126 KNFK 129 (223)
T ss_dssp BCTT
T ss_pred cccc
Confidence 7543
No 39
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.57 E-value=2e-07 Score=75.36 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=21.9
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHH
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQ 57 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~ 57 (302)
-+++|+++.|+||||||||||+..
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHH
Confidence 367899999999999999999984
No 40
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.57 E-value=2.6e-07 Score=78.21 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=29.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++..
T Consensus 19 ~l~~v-sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 19 ILKGI-SLSVKKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEE-EEEEETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred eEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45544 456899999999999999999999887765
No 41
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.48 E-value=3.9e-07 Score=79.10 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=41.2
Q ss_pred cccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 10 LLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 10 l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+++.+.....+. +.+.|+.+ +--+++|+++.|+||+|||||||+..++... ++..| .++++..
T Consensus 11 ~l~~~~l~~~~~-~~~vL~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G-----~I~~~g~ 73 (266)
T 4g1u_C 11 LLEASHLHYHVQ-QQALINDV-SLHIASGEMVAIIGPNGAGKSTLLRLLTGYL--SPSHG-----ECHLLGQ 73 (266)
T ss_dssp EEEEEEEEEEET-TEEEEEEE-EEEEETTCEEEEECCTTSCHHHHHHHHTSSS--CCSSC-----EEEETTE
T ss_pred eEEEEeEEEEeC-CeeEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCc-----EEEECCE
Confidence 444444333332 23456655 4568999999999999999999998887653 32333 4666654
No 42
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.45 E-value=1.9e-08 Score=90.74 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=30.8
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 18 ~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 18 PVLNDI-SLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEee-EEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 346555 4578999999999999999999998888764
No 43
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.45 E-value=6.1e-08 Score=88.11 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=30.6
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 17 ~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 17 VVSKDI-NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEeee-EEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 345554 4568999999999999999999999888764
No 44
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.44 E-value=4.6e-07 Score=78.06 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 20 vl~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 20 LFQQL-NFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEE-EEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEE-EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4568999999999999999999998887653
No 45
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.44 E-value=3.4e-07 Score=79.30 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 39 vL~~v-sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 39 VLKGI-NVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEee-EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45554 4568999999999999999999998887653
No 46
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.41 E-value=6.2e-08 Score=87.60 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 18 vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 18 AVDGV-SFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEeee-EEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45544 4468999999999999999999998887754
No 47
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.40 E-value=5.5e-06 Score=65.33 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=33.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+|+.+.|+||+|+|||+|+..++.... ..|. +++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~---~~g~---~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL---EAGK---NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH---TTTC---CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH---hcCC---cEEEEcHHH
Confidence 899999999999999999999988764 2343 689998764
No 48
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.40 E-value=2.8e-07 Score=79.64 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=36.1
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+.|+.+ +--+++|+++.|.||+|||||||+..++... ++.. ..++++..
T Consensus 21 ~vl~~v-sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~--~p~~-----G~i~~~g~ 69 (257)
T 1g6h_A 21 KALDGV-SISVNKGDVTLIIGPNGSGKSTLINVITGFL--KADE-----GRVYFENK 69 (257)
T ss_dssp EEEEEE-CCEEETTCEEEEECSTTSSHHHHHHHHTTSS--CCSE-----EEEEETTE
T ss_pred eeEeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--CCCC-----cEEEECCE
Confidence 346655 5678999999999999999999998887653 3222 34666654
No 49
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.39 E-value=4.4e-07 Score=81.67 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 15 ~l~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 15 SLDNL-SLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEE-EEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEeee-EEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 44444 4468999999999999999999998887754
No 50
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.39 E-value=2.2e-07 Score=79.82 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=29.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 15 vl~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 15 RLGPL-SGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45544 4468999999999999999999998887653
No 51
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.39 E-value=6.4e-08 Score=87.60 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 18 vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 18 ALNNI-NLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEee-EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45554 4568999999999999999999998887764
No 52
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.39 E-value=5.5e-08 Score=88.37 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 26 vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 26 AVNKL-NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEeee-EEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45554 4568999999999999999999998887754
No 53
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.37 E-value=5.3e-08 Score=87.87 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=30.4
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 29 ~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 29 RSVRGV-SFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEeee-EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345554 4568999999999999999999998887754
No 54
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.33 E-value=1.1e-06 Score=75.77 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 30 vl~~v-sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 30 ILKGI-SFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45554 4568999999999999999999998887653
No 55
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.6e-06 Score=77.72 Aligned_cols=123 Identities=10% Similarity=0.140 Sum_probs=70.1
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
|+++..=++|+||||+|||.+|..+|..+.. ..+.++...-+. ..
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~---------~f~~v~~s~l~s--------------------------k~ 222 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDC---------KFIRVSGAELVQ--------------------------KY 222 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTC---------EEEEEEGGGGSC--------------------------SS
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCC---------CceEEEhHHhhc--------------------------cc
Confidence 6766666999999999999999999987631 556666442110 00
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEec
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQ 193 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~ 193 (302)
.. +-...+..+-..... ..+.+|+||.+.++......+..+........+..++..|..+....++.||.++.
T Consensus 223 vG--ese~~vr~lF~~Ar~-----~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 223 IG--EGSRMVRELFVMARE-----HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp TT--HHHHHHHHHHHHHHH-----TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred cc--hHHHHHHHHHHHHHH-----hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 01 111122222222222 23499999999998754322221111223344567777776666566766666655
Q ss_pred ccccC
Q 022155 194 VVDLM 198 (302)
Q Consensus 194 ~~~~~ 198 (302)
--+.+
T Consensus 296 rpd~L 300 (405)
T 4b4t_J 296 RLDIL 300 (405)
T ss_dssp CSSSS
T ss_pred ChhhC
Confidence 43333
No 56
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.31 E-value=4.3e-08 Score=88.54 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 20 vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 20 ALDNV-NINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEE-EEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred eEece-EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44544 4468999999999999999999998887753
No 57
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.31 E-value=1.4e-06 Score=75.45 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=29.8
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 21 vl~~v-sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 21 VLKGV-SLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45554 4568999999999999999999998887653
No 58
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.31 E-value=1.5e-06 Score=70.48 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=34.1
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
-.++.|..+.|+||+|+|||+|+..++.... + ..|. .++|++..
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~~g~---~~~~~~~~ 76 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-E-KKGI---RGYFFDTK 76 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-H-HSCC---CCCEEEHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHH-H-HcCC---eEEEEEHH
Confidence 3567899999999999999999999988763 1 2343 67787744
No 59
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.30 E-value=3.9e-07 Score=77.89 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 21 vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 21 AIKGI-DLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45554 4468999999999999999999998887653
No 60
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.29 E-value=2e-07 Score=81.02 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 22 vl~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 22 ALENV-SLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45554 4568999999999999999999998887653
No 61
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.27 E-value=6.4e-06 Score=71.67 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
|+..+.-+.|+||||+|||+++..++.... . .+++++..
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~~------~---~~~~v~~~ 85 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATETN------A---TFIRVVGS 85 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHTT------C---EEEEEEGG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC------C---CEEEEehH
Confidence 567788899999999999999999987642 1 67777754
No 62
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=4.4e-06 Score=77.12 Aligned_cols=122 Identities=13% Similarity=0.183 Sum_probs=70.5
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
|+++..=+.|+||||+|||.+|..+|..+.. ..+.++...-+. . ..
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~---------~~~~v~~~~l~~---------------------~----~~ 247 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKA---------AFIRVNGSEFVH---------------------K----YL 247 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHTC---------EEEEEEGGGTCC---------------------S----SC
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEecchhhc---------------------c----cc
Confidence 7777777999999999999999999987621 566676542111 0 00
Q ss_pred C-CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEe
Q 022155 114 H-SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTN 192 (302)
Q Consensus 114 ~-~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n 192 (302)
. +...+.+++. .... ..+.+|+||.+.+++..-.....+......+.+..++..|..+....++.||.++
T Consensus 248 Ge~e~~ir~lF~----~A~~-----~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 248 GEGPRMVRDVFR----LARE-----NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp SHHHHHHHHHHH----HHHH-----TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred chhHHHHHHHHH----HHHH-----cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 0 1111222222 2222 2349999999999875321111111112233466777777776666677777665
Q ss_pred cccccC
Q 022155 193 QVVDLM 198 (302)
Q Consensus 193 ~~~~~~ 198 (302)
+-.+.+
T Consensus 319 N~~~~L 324 (428)
T 4b4t_K 319 NRADTL 324 (428)
T ss_dssp SCSSSC
T ss_pred CChhhc
Confidence 543333
No 63
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.26 E-value=3.1e-07 Score=83.46 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 18 vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 18 AVREM-SLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEeee-EEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45544 4468899999999999999999998887754
No 64
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.25 E-value=8.4e-06 Score=76.25 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=34.3
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFP 85 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~ 85 (302)
-+..|.++.|+|++||||||++..|+.... ..+| +|++.+.+ .+.
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G---~V~l~g~D-~~r 333 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGK---SVMLAAGD-TFR 333 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTC---CEEEECCC-TTC
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCC---eEEEecCc-ccc
Confidence 367899999999999999999999988763 3444 56555543 454
No 65
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.24 E-value=1.2e-06 Score=76.63 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=35.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++... ++.. ..++++..
T Consensus 36 vL~~i-sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~--~p~~-----G~I~~~g~ 83 (279)
T 2ihy_A 36 ILKKI-SWQIAKGDKWILYGLNGAGKTTLLNILNAYE--PATS-----GTVNLFGK 83 (279)
T ss_dssp EEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSS--CCSE-----EEEEETTB
T ss_pred EEEee-eEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCC-----eEEEECCE
Confidence 45554 4568999999999999999999998887653 3222 34666654
No 66
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=3.5e-06 Score=77.83 Aligned_cols=124 Identities=16% Similarity=0.199 Sum_probs=68.7
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
|+++..=++|+||||+|||.+|..+|..+.. ..+.++...-. +. ..
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~---------~f~~v~~s~l~---------------------~~----~v 256 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNA---------TFLKLAAPQLV---------------------QM----YI 256 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---------EEEEEEGGGGC---------------------SS----CS
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhCC---------CEEEEehhhhh---------------------hc----cc
Confidence 7777777999999999999999999987621 45666644211 00 00
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEec
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQ 193 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~ 193 (302)
...+ ..+..+...... ..+.+|+||.+.+++..-.....+........+..++..|..+....++.||.++.
T Consensus 257 Gese---~~ir~lF~~A~~-----~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 257 GEGA---KLVRDAFALAKE-----KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp SHHH---HHHHHHHHHHHH-----HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred chHH---HHHHHHHHHHHh-----cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 1111 112222222211 23499999999998753222211111222334556666665555555677775544
Q ss_pred ccccCC
Q 022155 194 VVDLME 199 (302)
Q Consensus 194 ~~~~~~ 199 (302)
-.+.++
T Consensus 329 rp~~LD 334 (434)
T 4b4t_M 329 RVDVLD 334 (434)
T ss_dssp SCCCCC
T ss_pred CchhcC
Confidence 334343
No 67
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.21 E-value=1e-05 Score=69.10 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=29.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 17 vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 17 ILRDI-SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp SEEEE-EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45544 4468999999999999999999998887653
No 68
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=6e-06 Score=76.37 Aligned_cols=124 Identities=11% Similarity=0.118 Sum_probs=67.7
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
|+++-.=++|+||||+|||.+|..+|..+.. ..++++...-++ . ..
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~---------~~~~v~~s~l~s---------------------k----~~ 256 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGA---------NFIFSPASGIVD---------------------K----YI 256 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---------EEEEEEGGGTCC---------------------S----SS
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---------CEEEEehhhhcc---------------------c----cc
Confidence 7777777999999999999999999987631 566676542111 0 00
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEec
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQ 193 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~ 193 (302)
... ...+..+...... ..+.+|+||.+.+++..-...+..........+..++..|..+....++.||.++.
T Consensus 257 Ges---e~~ir~~F~~A~~-----~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 257 GES---ARIIREMFAYAKE-----HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp SHH---HHHHHHHHHHHHH-----SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred hHH---HHHHHHHHHHHHh-----cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 111 1122222222222 34599999999998743222111111122333455555555444444566665544
Q ss_pred ccccCC
Q 022155 194 VVDLME 199 (302)
Q Consensus 194 ~~~~~~ 199 (302)
--+.++
T Consensus 329 rp~~LD 334 (437)
T 4b4t_L 329 RPDTLD 334 (437)
T ss_dssp STTSSC
T ss_pred CchhhC
Confidence 333343
No 69
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.20 E-value=6.3e-07 Score=76.60 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=28.0
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+.+ +--+++ +++.|.||+|||||||+..++...
T Consensus 15 l~~i-sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 15 RLNV-DFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEE-EEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred Eeee-EEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 4444 446889 999999999999999998887653
No 70
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.17 E-value=3.5e-06 Score=81.22 Aligned_cols=49 Identities=29% Similarity=0.366 Sum_probs=36.3
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+.|+.+ +--+++|+++.|+||+|||||||+..++... ++..| .++++..
T Consensus 357 ~~l~~i-~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~--~p~~G-----~i~~~g~ 405 (582)
T 3b5x_A 357 PALSHV-SFSIPQGKTVALVGRSGSGKSTIANLFTRFY--DVDSG-----SICLDGH 405 (582)
T ss_pred cccccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCC-----EEEECCE
Confidence 345554 4568999999999999999999998888764 22333 4666654
No 71
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.17 E-value=2.9e-06 Score=71.13 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=30.0
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 23 ~il~~v-sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 23 PVLERI-TMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEEEE-EEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345554 4468899999999999999999998887653
No 72
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.17 E-value=1.7e-05 Score=76.63 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=73.0
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCC--CCeEEEEeCCCCC----CHH-HHHHH-HHHhCC-------
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGL--SASSLYLHTEFPF----PMR-RLHQL-SHTFRP------- 98 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~--~~~vlyid~e~~~----~~~-rl~~i-~~~~~~------- 98 (302)
-+++|+++.|.||+|||||||+..++... ++..|.. ...+-|+.-+... +.. .+... ...+..
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 455 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 455 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSS--CCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHH
Confidence 36799999999999999999999887753 3334432 1245566543221 221 11111 000000
Q ss_pred ---CCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHH
Q 022155 99 ---SNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISG 175 (302)
Q Consensus 99 ---~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~ 175 (302)
.......++ .+.. -+.-+. ..+.-...++ .+++++++|+.++.+ |...+ ..+.+
T Consensus 456 l~~~~l~~~~~~-~~~~-LSGGe~-QRv~iAraL~-------~~p~lLlLDEPt~~L---------D~~~~----~~l~~ 512 (607)
T 3bk7_A 456 LKPLGIIDLYDR-NVED-LSGGEL-QRVAIAATLL-------RDADIYLLDEPSAYL---------DVEQR----LAVSR 512 (607)
T ss_dssp HHHHTCTTTTTS-BGGG-CCHHHH-HHHHHHHHHT-------SCCSEEEEECTTTTC---------CHHHH----HHHHH
T ss_pred HHHcCCchHhcC-Chhh-CCHHHH-HHHHHHHHHH-------hCCCEEEEeCCccCC---------CHHHH----HHHHH
Confidence 000000100 0001 111111 1111112222 245999999999854 22333 35667
Q ss_pred HHHHHHHHcCcEEEEEecccc
Q 022155 176 MLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 176 ~L~~la~~~~~~viv~n~~~~ 196 (302)
.|++++++.+.+||++.|...
T Consensus 513 ~l~~l~~~~g~tvi~vsHd~~ 533 (607)
T 3bk7_A 513 AIRHLMEKNEKTALVVEHDVL 533 (607)
T ss_dssp HHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHHhCCCEEEEEeCCHH
Confidence 788888788999999999643
No 73
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.16 E-value=6.6e-07 Score=79.15 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=36.2
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
-+.|+.+ +--+++|+++.|+||+|||||||+..++... ++.. ..++++..
T Consensus 67 ~~vL~~i-sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~--~p~~-----G~I~i~G~ 116 (306)
T 3nh6_A 67 RETLQDV-SFTVMPGQTLALVGPSGAGKSTILRLLFRFY--DISS-----GCIRIDGQ 116 (306)
T ss_dssp CEEEEEE-EEEECTTCEEEEESSSCHHHHHHHHHHTTSS--CCSE-----EEEEETTE
T ss_pred Cceeeee-eEEEcCCCEEEEECCCCchHHHHHHHHHcCC--CCCC-----cEEEECCE
Confidence 3445554 4468999999999999999999998887654 2222 35677654
No 74
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.16 E-value=3.8e-05 Score=68.48 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=32.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
++|+++.|+||+|+||||++..++.... ..++ +|.+.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g---~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGF---SVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTC---CEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCC---EEEEEeec
Confidence 5799999999999999999999998764 4455 67777655
No 75
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=7.6e-06 Score=75.09 Aligned_cols=125 Identities=13% Similarity=0.127 Sum_probs=68.3
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEe
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQS 112 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~ 112 (302)
.|+++..=++|+||||+|||.+|..+|..+.. ..+.++...-+ +. .
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~---------~fi~v~~s~l~---------------------sk----~ 256 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSA---------TFLRIVGSELI---------------------QK----Y 256 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC---------EEEEEESGGGC---------------------CS----S
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCC---------CEEEEEHHHhh---------------------hc----c
Confidence 37777777999999999999999999988631 45666644211 00 0
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEe
Q 022155 113 VHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTN 192 (302)
Q Consensus 113 ~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n 192 (302)
....+ ..+..+...... ..+.+|+||.+.+++..-..............+..++..+..+....++.||.++
T Consensus 257 vGese---k~ir~lF~~Ar~-----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaAT 328 (437)
T 4b4t_I 257 LGDGP---RLCRQIFKVAGE-----NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMAT 328 (437)
T ss_dssp SSHHH---HHHHHHHHHHHH-----TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEE
T ss_pred CchHH---HHHHHHHHHHHh-----cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeC
Confidence 11111 122222222222 2349999999999875322111111112223345556655554444566666655
Q ss_pred cccccCC
Q 022155 193 QVVDLME 199 (302)
Q Consensus 193 ~~~~~~~ 199 (302)
.-.+.++
T Consensus 329 Nrpd~LD 335 (437)
T 4b4t_I 329 NKIETLD 335 (437)
T ss_dssp SCSTTCC
T ss_pred CChhhcC
Confidence 4444444
No 76
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.15 E-value=4.9e-05 Score=68.70 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=68.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH-HHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM-RRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQ 118 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~-~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~ 118 (302)
.+.|+||+|+|||+++..++.... ... ...++|+++....+. .-+..+...+....+. ...+..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~---~~~--~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~---------~~~~~~~ 111 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK---DKT--TARFVYINGFIYRNFTAIIGEIARSLNIPFPR---------RGLSRDE 111 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT---TSC--CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS---------SCCCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh---hhc--CeeEEEEeCccCCCHHHHHHHHHHHhCccCCC---------CCCCHHH
Confidence 899999999999999999988753 221 127899997655444 3345555554321110 0113333
Q ss_pred HHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHH--cCcEEEEEecc
Q 022155 119 LLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVG--FGLAVLVTNQV 194 (302)
Q Consensus 119 l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~--~~~~viv~n~~ 194 (302)
+. ..+...+.. ..+..+|+||.+..+- . + .+..+.+.+..+... .++.+|++.+.
T Consensus 112 ~~---~~l~~~l~~----~~~~~vlilDE~~~l~-------~-~------~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 112 FL---ALLVEHLRE----RDLYMFLVLDDAFNLA-------P-D------ILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HH---HHHHHHHHH----TTCCEEEEEETGGGSC-------H-H------HHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HH---HHHHHHHhh----cCCeEEEEEECccccc-------h-H------HHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 33 333444433 2345899999998851 0 1 123334444333321 58888887653
No 77
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.11 E-value=1.1e-05 Score=76.91 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=73.8
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCC--CCeEEEEeCCCC----CCH-HHHHHH-HHHhCCC-CCCCCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGL--SASSLYLHTEFP----FPM-RRLHQL-SHTFRPS-NDHNPC 105 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~--~~~vlyid~e~~----~~~-~rl~~i-~~~~~~~-~~~~~l 105 (302)
+++|+++.|+||+|||||||+..++... ++..|.. ...+-|+.-+.. ++. +.+... ...+... .....+
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 386 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVE--EPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELL 386 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS--CCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 5799999999999999999999887753 3334432 124566654432 122 111111 0001000 000111
Q ss_pred CcEEEE-----eC--CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHH
Q 022155 106 DYIFVQ-----SV--HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLK 178 (302)
Q Consensus 106 ~~i~~~-----~~--~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~ 178 (302)
+.+-+. .+ -+.-+. ..+. |...+. .+++++++|+.++-. |...+ ..+...|+
T Consensus 387 ~~~~l~~~~~~~~~~LSGGe~-qrv~-lAraL~------~~p~lLlLDEPt~~L---------D~~~~----~~i~~~l~ 445 (538)
T 1yqt_A 387 KPLGIIDLYDREVNELSGGEL-QRVA-IAATLL------RDADIYLLDEPSAYL---------DVEQR----LAVSRAIR 445 (538)
T ss_dssp TTTTCGGGTTSBGGGCCHHHH-HHHH-HHHHHT------SCCSEEEEECTTTTC---------CHHHH----HHHHHHHH
T ss_pred HHcCChhhhcCChhhCCHHHH-HHHH-HHHHHH------hCCCEEEEeCCcccC---------CHHHH----HHHHHHHH
Confidence 111110 00 111111 1111 122232 245999999999854 22332 35677788
Q ss_pred HHHHHcCcEEEEEecccc
Q 022155 179 AMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 179 ~la~~~~~~viv~n~~~~ 196 (302)
+++++++.+||++.|...
T Consensus 446 ~l~~~~g~tvi~vsHd~~ 463 (538)
T 1yqt_A 446 HLMEKNEKTALVVEHDVL 463 (538)
T ss_dssp HHHHHHTCEEEEECSCHH
T ss_pred HHHHhCCCEEEEEeCCHH
Confidence 888778999999999643
No 78
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.09 E-value=6.7e-05 Score=66.19 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=31.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+|+++.|+||+||||||++..++.... ..+| +|.+.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g---~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGK---KVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTC---CEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCC---EEEEEeec
Confidence 689999999999999999999998764 3454 66666544
No 79
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=1.4e-05 Score=74.04 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+++-.=++|+||||+|||.+|..+|..+
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 77777779999999999999999999876
No 80
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.08 E-value=1e-05 Score=66.13 Aligned_cols=39 Identities=15% Similarity=0.057 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+|.+..++|++|+||||++++++..+. ..|. +++++...
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~---~~g~---~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK---LGKK---KVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH---HTTC---EEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH---HCCC---eEEEEeec
Confidence 478999999999999999999998874 3444 78887644
No 81
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.08 E-value=4.6e-05 Score=70.40 Aligned_cols=43 Identities=23% Similarity=0.175 Sum_probs=35.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
++.++.++|++|+||||++..++.... ..|+ +|++++++ .+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~---~~G~---kVllv~~D-~~r~ 138 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK---KRGY---KVGLVAAD-VYRP 138 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH---HTTC---CEEEEEEC-CSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC---eEEEEecC-ccch
Confidence 478999999999999999999998875 4565 89999977 4444
No 82
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.08 E-value=4.6e-05 Score=70.44 Aligned_cols=43 Identities=23% Similarity=0.188 Sum_probs=35.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
++.++.++|++|+||||++..+|..+. ..|. +|+.++++ ++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~---~~G~---kVllv~~D-~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ---KRGY---KVGVVCSD-TWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTC---CEEEEECC-CSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH---HCCC---eEEEEeCC-Ccch
Confidence 367999999999999999999998875 4555 89999977 4444
No 83
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.07 E-value=1.2e-05 Score=76.64 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=34.0
Q ss_pred CeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 139 PIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 139 ~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
+++++++|..++-. |...+ ..+.+.|++++++.+.+||++.|...
T Consensus 403 ~p~lLlLDEPT~gL---------D~~~~----~~i~~~l~~l~~~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 403 EADLYVLDQPSSYL---------DVEER----YIVAKAIKRVTRERKAVTFIIDHDLS 447 (538)
T ss_dssp CCSEEEEESTTTTC---------CHHHH----HHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCEEEEeCCccCC---------CHHHH----HHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45999999999854 22333 35677888888889999999999643
No 84
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.02 E-value=1.1e-05 Score=72.63 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=46.7
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++++.......+.||...||.++ -+.+|+++.|+||+|+|||||+..++...
T Consensus 43 ~~~i~~~~l~~~~~tg~~ald~ll--~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRAIDGLL--TCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp SCSTTCCCCCSEECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCeeecccceecCCCCEEEEeee--eecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346777777888889999999985 68999999999999999999998888875
No 85
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.01 E-value=3.8e-06 Score=80.95 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=35.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+++.|+||+|||||||+..++... ++.. +.++++..
T Consensus 358 ~l~~v-~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--~p~~-----G~i~~~g~ 405 (582)
T 3b60_A 358 ALRNI-NLKIPAGKTVALVGRSGSGKSTIASLITRFY--DIDE-----GHILMDGH 405 (582)
T ss_dssp SEEEE-EEEECTTCEEEEEECTTSSHHHHHHHHTTTT--CCSE-----EEEEETTE
T ss_pred cccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc--CCCC-----CeEEECCE
Confidence 45544 4468999999999999999999998887764 2222 35677654
No 86
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.01 E-value=6.9e-05 Score=66.18 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=36.5
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
..+++++.|+|++|+||||++..+|.... ..|+ +|++++.+ .+..
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~---kV~lv~~D-~~r~ 145 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGK---SVVLAAAD-TFRA 145 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC---CEEEEEEC-TTCH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCC---EEEEEccc-cccH
Confidence 35789999999999999999999998864 4455 89998876 4444
No 87
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=98.01 E-value=1.5e-05 Score=71.21 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHc--CcEEEEEeccc
Q 022155 118 QLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGF--GLAVLVTNQVV 195 (302)
Q Consensus 118 ~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~--~~~viv~n~~~ 195 (302)
.+..++.+|++.+.. ...++-.|+|=|+....+...... ....+..++..||.|.+.+ ++++++|-...
T Consensus 199 ~y~~lL~~I~~~i~~---~~~~ilRIvI~SLgSP~wy~~~~~------~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~ 269 (361)
T 4a8j_A 199 PVSTILSQIEQTIKR---NDKKLIRIVIPSLLHPAMYPPKMF------ESSEIIGLMHGVRSLVKKYYERVVLFASISID 269 (361)
T ss_dssp CHHHHHHHHHHHHHH---TTTSEEEEEETTTTCTTTSCGGGG------BHHHHHHHHHHHHHHHHHTTTTEEEEEEEECT
T ss_pred hHHHHHHHHHHHHhc---CCCceEEEEecCCCCcccCCCccc------CHHHHHHHHHHHHHHHhhcCCceEEEEEEChH
Confidence 345677788777754 246789999999988765331110 1123678999999999987 55777763321
Q ss_pred ccCCCCCCCCCccccCCccccCCCCCccccCCchhhhhcceEEEEEEecC
Q 022155 196 DLMEPNEGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNED 245 (302)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lG~~w~~~~~~rl~l~~~~~ 245 (302)
.+ -+.+-..|.+++|+.|.|+.-..
T Consensus 270 -------------------l~------~~~l~~rle~l~D~vi~L~pF~~ 294 (361)
T 4a8j_A 270 -------------------II------TPPLLVLLRNMFDSVINLEPFNQ 294 (361)
T ss_dssp -------------------TS------CHHHHHHHHHHCSEEEEEEECCH
T ss_pred -------------------Hc------ChHHHHHHHHhCcEEEEeeecCC
Confidence 11 11344678999999999988543
No 88
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.01 E-value=5.2e-06 Score=75.82 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=37.5
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
...|+.+ +--+++|+++.|.||+|||||||+..++... + .. .-++++...
T Consensus 34 ~~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--~-~~-----G~I~i~G~~ 83 (390)
T 3gd7_A 34 NAILENI-SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N-TE-----GEIQIDGVS 83 (390)
T ss_dssp CCSEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHHTCS--E-EE-----EEEEESSCB
T ss_pred eEEeece-eEEEcCCCEEEEECCCCChHHHHHHHHhCCC--C-CC-----eEEEECCEE
Confidence 3456665 4578999999999999999999998887653 2 22 357777653
No 89
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.00 E-value=1.9e-05 Score=75.24 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=29.6
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ . -+.+|+++.|+||+|||||||+..++...
T Consensus 37 ~l~~v-s-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 37 VLYRL-P-VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEECC-C-CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cccCc-C-cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46654 5 68999999999999999999998887753
No 90
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.00 E-value=6.1e-05 Score=68.14 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=71.0
Q ss_pred CccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhC
Q 022155 18 EKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFR 97 (302)
Q Consensus 18 ~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~ 97 (302)
+.+.||+..+|-++ -+.+|+-+.|+||+|+|||+|+.+++..... .. .+..|+|+-... ..+...++...+
T Consensus 156 ~~~~tGiraID~~~--pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~--~~--~~v~~I~~lIGE--R~~Ev~~~~~~~- 226 (422)
T 3ice_A 156 STEDLTARVLDLAS--PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY--NH--PDCVLMVLLIDE--RPEEVTEMQRLV- 226 (422)
T ss_dssp CTTHHHHHHHHHHS--CCBTTCEEEEECCSSSSHHHHHHHHHHHHHH--HC--TTSEEEEEEESS--CHHHHHHHHTTC-
T ss_pred Ccccccceeeeeee--eecCCcEEEEecCCCCChhHHHHHHHHHHhh--cC--CCeeEEEEEecC--ChHHHHHHHHHh-
Confidence 67899999999886 6889999999999999999999999887531 11 123577765332 234444444322
Q ss_pred CCCCCCCCCcEEEEeCCC-HH--HHH--HHHHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 98 PSNDHNPCDYIFVQSVHS-VD--QLL--DIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 98 ~~~~~~~l~~i~~~~~~~-~~--~l~--~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
..+.+....+ .. ... .....+.+++.+ .+.--+|++||++.+..
T Consensus 227 --------~~~vV~atadep~~~r~~~a~~alt~AEyfrd----~G~dVLil~DslTR~A~ 275 (422)
T 3ice_A 227 --------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVE----HKKDVIILLDSITRLAR 275 (422)
T ss_dssp --------SSEEEEECTTSCHHHHHHHHHHHHHHHHHHHH----TSCEEEEEEECHHHHHH
T ss_pred --------CeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh----cCCCEEEEEeCchHHHH
Confidence 2344443322 11 111 111122333433 34558889999998753
No 91
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.98 E-value=2.5e-05 Score=68.72 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=43.1
Q ss_pred ccCChhhHhhhCCCCCC-------CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 21 TVGCPIIDRCLGGGIPC-------NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 21 ~tG~~~LD~~L~GGl~~-------G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
......|+..++++... +.++.++|++|+||||++..++.... ..|+ +|++++.+-
T Consensus 74 ~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~---~v~l~~~D~ 136 (297)
T 1j8m_F 74 KIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYK---KKGF---KVGLVGADV 136 (297)
T ss_dssp HHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHH---HTTC---CEEEEECCC
T ss_pred HHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCC---eEEEEecCC
Confidence 34555677776554322 88999999999999999999998875 4565 899999874
No 92
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.97 E-value=4.6e-05 Score=73.50 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|-+..|+++.|+||+|||||||+..++...
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred CccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence 457788999999999999999998887753
No 93
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=97.96 E-value=8.8e-05 Score=69.05 Aligned_cols=128 Identities=13% Similarity=0.241 Sum_probs=79.7
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR 87 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~ 87 (302)
.+..++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||++++....+.. ..+ ..|+|+-.... .+
T Consensus 134 p~~~~R~~v~epl~TGikaID~l~--PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~---~~d---v~~V~~~IGeR--~~ 203 (513)
T 3oaa_A 134 PGVIERQSVDQPVQTGYKAVDSMI--PIGRGQRELIIGDRQTGKTALAIDAIINQR---DSG---IKCIYVAIGQK--AS 203 (513)
T ss_dssp CCSSSCCCCCCBCCCSCHHHHHHS--CCBTTCBCEEEESSSSSHHHHHHHHHHTTS---SSS---CEEEEEEESCC--HH
T ss_pred CCccccCCcCcccccceeeecccc--ccccCCEEEeecCCCCCcchHHHHHHHhhc---cCC---ceEEEEEecCC--hH
Confidence 357788888999999999999987 577999999999999999999876665542 222 26788775543 22
Q ss_pred HHHHHHHHhCCCCCCCCCCcEE-EEeCCCHH---HHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 88 RLHQLSHTFRPSNDHNPCDYIF-VQSVHSVD---QLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 88 rl~~i~~~~~~~~~~~~l~~i~-~~~~~~~~---~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
...++...+.. ...+++.. +....+.. .+... -..+.+++.+ .+.--||++||++.+.
T Consensus 204 ev~e~~~~l~~---~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd----~G~dVLli~Dsltr~A 267 (513)
T 3oaa_A 204 TISNVVRKLEE---HGALANTIVVVATASESAALQYLAPYAGCAMGEYFRD----RGEDALIIYDDLSKQA 267 (513)
T ss_dssp HHHHHHHHHHH---HSCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHH----TTCEEEEEEETHHHHH
T ss_pred HHHHHHHHHhh---cCcccceEEEEECCCCChHHHHHHHHHHHHHHHHHHh----cCCCEEEEecChHHHH
Confidence 23333322211 13445533 33332211 11111 1133444444 3455899999999864
No 94
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=97.96 E-value=7.6e-05 Score=69.60 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=79.8
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHH
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRR 88 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~r 88 (302)
+..++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||++++....+.. ..+ ..|+|.-.... .+.
T Consensus 135 ~~~~R~~v~epl~TGiraID~l~--PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~---~~d---v~~V~~~iGeR--~~E 204 (502)
T 2qe7_A 135 GVMDRKSVHEPLQTGIKAIDSMI--PIGRGQRELIIGDRQTGKTTIAIDTIINQK---GQD---VICIYVAIGQK--QST 204 (502)
T ss_dssp CTTSBCCCCSBCCCSCHHHHHSS--CCBTTCBCEEEECSSSCHHHHHHHHHHGGG---SCS---EEEEEEEESCC--HHH
T ss_pred CcccccCCCCccccceeeccccc--ccccCCEEEEECCCCCCchHHHHHHHHHhh---cCC---cEEEEEECCCc--chH
Confidence 46777888999999999999987 577999999999999999999886666553 222 25788775433 333
Q ss_pred HHHHHHHhCCCCCCCCCCcEEE-EeCCCHH---HHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 89 LHQLSHTFRPSNDHNPCDYIFV-QSVHSVD---QLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 89 l~~i~~~~~~~~~~~~l~~i~~-~~~~~~~---~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
..++...+.. ...+++..+ ....+.. .+... -..+.+++.+ .+.--||++||++.+.
T Consensus 205 v~~~~~~~~~---~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd----~G~dVLl~~Dsltr~A 267 (502)
T 2qe7_A 205 VAGVVETLRQ---HDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMY----KGKHALVVYDDLSKQA 267 (502)
T ss_dssp HHHHHHHHHH---TTCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEECHHHHH
T ss_pred HHHHHHHHhh---CCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCCcEEEEEecHHHHH
Confidence 3333333211 134555443 3332221 11111 1233445544 3455899999999865
No 95
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.94 E-value=5.8e-05 Score=68.05 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=58.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH-HHHHHHHHhCCCCCCCCCCcEEEEeCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR-RLHQLSHTFRPSNDHNPCDYIFVQSVH 114 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~-rl~~i~~~~~~~~~~~~l~~i~~~~~~ 114 (302)
..+..+.|+||+|+|||+++..++....-.....+....++|+++....+.. -+..+...+....+. ...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~---------~~~ 112 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPF---------TGL 112 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCS---------SCC
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCC---------CCC
Confidence 4567899999999999999999987752000000112378999977544443 345555554321110 111
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 115 SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 115 ~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
+..+ ++..+...+.. .....+|+||.+..+.
T Consensus 113 ~~~~---~~~~l~~~l~~----~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 113 SVGE---VYERLVKRLSR----LRGIYIIVLDEIDFLP 143 (387)
T ss_dssp CHHH---HHHHHHHHHTT----SCSEEEEEEETTTHHH
T ss_pred CHHH---HHHHHHHHHhc----cCCeEEEEEccHhhhc
Confidence 2333 23334444432 2345799999999865
No 96
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.94 E-value=2e-05 Score=73.15 Aligned_cols=64 Identities=20% Similarity=0.135 Sum_probs=51.6
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
++++.......+.||...||.+| -+.+|+++.|+||+|+|||||+..++.... + . . .++.+..+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~vl--~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-~-~-~----G~i~~~G~ 193 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINALL--TVGRGQRMGLFAGSGVGKSVLLGMMARYTR-A-D-V----IVVGLIGE 193 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHHS--CCBTTCEEEEEECTTSSHHHHHHHHHHHSC-C-S-E----EEEEEESC
T ss_pred CceEEeccceecCCCceEEeeeE--EecCCCEEEEECCCCCCHHHHHHHHhcccC-C-C-e----EEEEEece
Confidence 46777777788888999999985 699999999999999999999988888752 1 1 1 46677765
No 97
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.93 E-value=6.7e-06 Score=74.24 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=55.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH-HHHHHHHHhCCCCCCCCCCcEEEEeCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR-RLHQLSHTFRPSNDHNPCDYIFVQSVH 114 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~-rl~~i~~~~~~~~~~~~l~~i~~~~~~ 114 (302)
..+..+.|+||+|+|||+++..++.... + ..+. ...++|+++....... -+..+...+....+ ....
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~-~-~~~~-~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~ 110 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH-K-KFLG-KFKHVYINTRQIDTPYRVLADLLESLDVKVP---------FTGL 110 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH-H-HTCS-SCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC---------SSSC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH-H-HhcC-CceEEEEECCCCCCHHHHHHHHHHHhCCCCC---------CCCC
Confidence 3577899999999999999999987752 1 1110 1278999865322322 23333322211000 0111
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhh
Q 022155 115 SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 115 ~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
+..+ .+..+...+.. .....+||||.+..+..
T Consensus 111 ~~~~---~~~~l~~~l~~----~~~~~vlilDE~~~l~~ 142 (386)
T 2qby_A 111 SIAE---LYRRLVKAVRD----YGSQVVIVLDEIDAFVK 142 (386)
T ss_dssp CHHH---HHHHHHHHHHT----CCSCEEEEEETHHHHHH
T ss_pred CHHH---HHHHHHHHHhc----cCCeEEEEEcChhhhhc
Confidence 2333 33344444443 23358999999998753
No 98
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.92 E-value=5.7e-06 Score=79.89 Aligned_cols=48 Identities=29% Similarity=0.342 Sum_probs=35.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+++ +--+++|+++.|+||+|||||||+..++... ++.. +.++++..
T Consensus 359 vl~~i-sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--~p~~-----G~i~~~g~ 406 (595)
T 2yl4_A 359 IFQDF-SLSIPSGSVTALVGPSGSGKSTVLSLLLRLY--DPAS-----GTISLDGH 406 (595)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSSTHHHHHHTTSS--CCSE-----EEEEETTE
T ss_pred cccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCC-----cEEEECCE
Confidence 45544 4468999999999999999999998887764 2222 35677654
No 99
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.91 E-value=5.8e-05 Score=70.65 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=63.8
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVH 114 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~ 114 (302)
++.| +.|+||||+|||+++..++.... . ..++++...-.. .... .
T Consensus 48 ~p~g--vLL~GppGtGKT~Laraia~~~~------~---~f~~is~~~~~~-----------------~~~g-------~ 92 (476)
T 2ce7_A 48 MPKG--ILLVGPPGTGKTLLARAVAGEAN------V---PFFHISGSDFVE-----------------LFVG-------V 92 (476)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHHT------C---CEEEEEGGGTTT-----------------CCTT-------H
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHcC------C---CeeeCCHHHHHH-----------------HHhc-------c
Confidence 4455 88999999999999999987652 1 567776542110 0000 0
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecc
Q 022155 115 SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194 (302)
Q Consensus 115 ~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~ 194 (302)
....+..++.. ... ..+.+|+||.+..+....-....+....+.+.+.+++..+..+....++.||.+.+.
T Consensus 93 ~~~~~r~lf~~---A~~------~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~ 163 (476)
T 2ce7_A 93 GAARVRDLFAQ---AKA------HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNR 163 (476)
T ss_dssp HHHHHHHHHHH---HHH------TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESC
T ss_pred cHHHHHHHHHH---HHh------cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCC
Confidence 11112222221 111 235899999999975421100000112233445566666554444567888887776
Q ss_pred cccC
Q 022155 195 VDLM 198 (302)
Q Consensus 195 ~~~~ 198 (302)
.+..
T Consensus 164 ~~~L 167 (476)
T 2ce7_A 164 PDIL 167 (476)
T ss_dssp GGGS
T ss_pred hhhh
Confidence 5443
No 100
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.91 E-value=7.1e-05 Score=64.03 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=26.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.-+.|+||||+|||+++..++.... . .+++++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~------~---~~~~i~~~ 79 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK------V---PFFTISGS 79 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT------C---CEEEECSC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC------C---CEEEEeHH
Confidence 3488999999999999999987642 1 46777754
No 101
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.88 E-value=2.1e-05 Score=69.11 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
+++....+.|+||||+|||++|..+|.... . .+++++.
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~------~---~~i~v~~ 69 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMG------I---NPIMMSA 69 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHT------C---CCEEEEH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC------C---CEEEEeH
Confidence 566667899999999999999999988752 1 5778874
No 102
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.88 E-value=2.8e-05 Score=75.09 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=29.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ . -+++|+++.|.||+|||||||+..++...
T Consensus 107 ~l~~v-s-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 107 VLYRL-P-IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEECC-C-CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeCCC-C-CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45554 4 68999999999999999999998887653
No 103
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=97.87 E-value=8.8e-05 Score=69.24 Aligned_cols=127 Identities=13% Similarity=0.185 Sum_probs=79.5
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHH
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRR 88 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~r 88 (302)
+..++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||++++....+.. ..+ ..|+|+-.... .+.
T Consensus 148 ~~~~R~~v~epl~TGiraID~l~--PigrGQR~~I~g~~g~GKT~Lal~~I~~~~---~~d---v~~V~~~IGeR--~~E 217 (515)
T 2r9v_A 148 GVIYRKPVDTPLQTGIKAIDSMI--PIGRGQRELIIGDRQTGKTAIAIDTIINQK---GQG---VYCIYVAIGQK--KSA 217 (515)
T ss_dssp CGGGBCCCCSEECCSCHHHHHHS--CEETTCBEEEEEETTSSHHHHHHHHHHTTT---TTT---EEEEEEEESCC--HHH
T ss_pred CcccccCCCcchhcCcccccccc--ccccCCEEEEEcCCCCCccHHHHHHHHHhh---cCC---cEEEEEEcCCC--cHH
Confidence 46777778899999999999987 577999999999999999999876655543 222 25788765433 233
Q ss_pred HHHHHHHhCCCCCCCCCCcEEE-EeCCCHH---HHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 89 LHQLSHTFRPSNDHNPCDYIFV-QSVHSVD---QLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 89 l~~i~~~~~~~~~~~~l~~i~~-~~~~~~~---~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
..++...+.. ...+++..+ ....+.. .+... -..+.+++.+ .+.--||++||++.+.
T Consensus 218 v~e~~~~~~~---~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd----~G~dVLli~DslTr~A 280 (515)
T 2r9v_A 218 IARIIDKLRQ---YGAMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAY----SGRDALVVYDDLSKHA 280 (515)
T ss_dssp HHHHHHHHHH---TTGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEETHHHHH
T ss_pred HHHHHHHHHh---CCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccHHHHH
Confidence 3333333211 134555443 3332211 11111 1233444544 3455899999999865
No 104
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.86 E-value=0.00015 Score=67.41 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=51.2
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
++.++....+.+.||+..+|.+. -+-+|+.+.|+|++|+|||+|+..++.+... ..+. -++|..
T Consensus 124 ~~~~r~~~~e~l~TGir~ID~L~--pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~--~~~~---i~V~~~ 187 (473)
T 1sky_E 124 KFEELATEVEILETGIKVVDLLA--PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ--EHGG---ISVFAG 187 (473)
T ss_dssp CGGGBCCSCCEECCSCHHHHHHS--CEETTCEEEEECCSSSCHHHHHHHHHHHHHH--HTCC---CEEEEE
T ss_pred chhhhcccCccccccchHHHHHh--hhccCCEEEEECCCCCCccHHHHHHHhhhhh--ccCc---EEEEee
Confidence 46777778899999999999986 5678999999999999999999999887542 1233 456654
No 105
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.86 E-value=9.7e-05 Score=65.67 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=32.7
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+..+..-+.|+||||+|||++|..++.... +. ..++++..
T Consensus 39 ~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~---~~~~i~~~ 80 (322)
T 1xwi_A 39 TGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NS---TFFSISSS 80 (322)
T ss_dssp CTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-----SC---EEEEEECC
T ss_pred hCCCCCCceEEEECCCCccHHHHHHHHHHHcC-----CC---cEEEEEhH
Confidence 35566778899999999999999999988751 21 57777765
No 106
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.85 E-value=9.4e-05 Score=65.74 Aligned_cols=45 Identities=22% Similarity=0.160 Sum_probs=37.0
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
..+++++.|+|++|+||||++..+|.... ..|+ +|++++.+ .+..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~---kVllid~D-~~r~ 146 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGY---KVLIAAAD-TFRA 146 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTC---CEEEEECC-CSCH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCC---eEEEEeCC-Ccch
Confidence 46789999999999999999999998865 4565 89999977 3443
No 107
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=97.85 E-value=0.00014 Score=67.99 Aligned_cols=130 Identities=14% Similarity=0.180 Sum_probs=79.3
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCC-----CcCCCCCCeEEEEeCCCC
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLP-----SSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~-----~~~gg~~~~vlyid~e~~ 83 (302)
+..++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|++....+..-. ...+ ..|+|+-....
T Consensus 135 ~~~~R~~v~epl~TGiraID~l~--PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d---~~~V~~~IGeR 209 (510)
T 2ck3_A 135 GIIPRISVREPMQTGIKAVDSLV--PIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKK---LYCIYVAIGQK 209 (510)
T ss_dssp CSTTBCCCCSBCCCSCHHHHHHS--CCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTC---CEEEEEEESCC
T ss_pred CcccccccCccccccceeecccc--ccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCC---eEEEEEECCCC
Confidence 46677777899999999999987 57799999999999999999977555554310 0022 26888765433
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCcEEE-EeCCCH---HHHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 84 FPMRRLHQLSHTFRPSNDHNPCDYIFV-QSVHSV---DQLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 84 ~~~~rl~~i~~~~~~~~~~~~l~~i~~-~~~~~~---~~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
.+...++...+.. ...+++..+ ....+. ..+... -..+.+++.+ .+.--||++||++.+.
T Consensus 210 --~~Ev~~~~~~~~~---~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd----~G~dVLli~Dsltr~A 275 (510)
T 2ck3_A 210 --RSTVAQLVKRLTD---ADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRD----NGKHALIIYDDLSKQA 275 (510)
T ss_dssp --HHHHHHHHHHHHH---TTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEETHHHHH
T ss_pred --cHHHHHHHHHHHh---cCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCCcEEEEEcCHHHHH
Confidence 2333333333211 134555443 333221 112111 1233444544 3455899999999865
No 108
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.85 E-value=4.5e-05 Score=73.60 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=25.6
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+++|+++.|.||+|+|||||+..++...
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 46799999999999999999998887753
No 109
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.85 E-value=7.3e-06 Score=79.02 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=36.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.|+++ +--+++|+++.|+||+|||||||+..++... ++.. ..++++...
T Consensus 358 ~l~~i-sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~--~~~~-----G~i~i~g~~ 406 (587)
T 3qf4_A 358 VLSGV-NFSVKPGSLVAVLGETGSGKSTLMNLIPRLI--DPER-----GRVEVDELD 406 (587)
T ss_dssp SEEEE-EEEECTTCEEEEECSSSSSHHHHHHTTTTSS--CCSE-----EEEEESSSB
T ss_pred ceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--cCCC-----cEEEECCEE
Confidence 45554 3468999999999999999999998777654 2222 357777653
No 110
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=97.84 E-value=7.5e-05 Score=69.70 Aligned_cols=127 Identities=16% Similarity=0.209 Sum_probs=79.8
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHH
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRR 88 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~r 88 (302)
+..++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||++++....+.. ..+. .|+|.-.... .+.
T Consensus 136 ~~~~R~~v~epl~TGiraID~l~--PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~---~~dv---~~V~~~iGeR--~~E 205 (507)
T 1fx0_A 136 GIMSRRSVYEPLQTGLIAIDAMI--PVGRGQRELIIGDRQTGKTAVATDTILNQQ---GQNV---ICVYVAIGQK--ASS 205 (507)
T ss_dssp CSSSBCCCCSBCCCSCTTTTTTS--CCBTTCBCBEEESSSSSHHHHHHHHHHTCC---TTTC---EEEEEEESCC--HHH
T ss_pred CcccccccCCcccccceeccccc--ccccCCEEEEecCCCCCccHHHHHHHHHhh---cCCc---EEEEEEcCCC--chH
Confidence 46677777899999999999987 577999999999999999999886666543 2232 6788775432 334
Q ss_pred HHHHHHHhCCCCCCCCCCcEEE-EeCCCH---HHHH--HHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 89 LHQLSHTFRPSNDHNPCDYIFV-QSVHSV---DQLL--DIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 89 l~~i~~~~~~~~~~~~l~~i~~-~~~~~~---~~l~--~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
..++...+.. ...+++..+ ....+. ..+. ..-..+.+++.+ .+.--||++||++.+.
T Consensus 206 v~~~~~~~~~---~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd----~G~dVLli~Dsltr~A 268 (507)
T 1fx0_A 206 VAQVVTNFQE---RGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMY----RERHTLIIYDDLSKQA 268 (507)
T ss_dssp HHHHHHHTGG---GTGGGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHH----TTCEEEEEEECHHHHH
T ss_pred HHHHHHHHHh---cCccccceEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCCcEEEEEecHHHHH
Confidence 4444444321 134455433 332221 1111 111233344443 3455899999999854
No 111
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.84 E-value=2.7e-05 Score=68.57 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|++++..+.|+||||+|||++|..++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 68899999999999999999999998764
No 112
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.84 E-value=5.7e-05 Score=60.73 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+..+.|+||+|+|||+++..++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998875
No 113
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.82 E-value=6.7e-06 Score=79.47 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=34.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+++ +--+++|+++.|+||+|||||||+..++... ++.. +.++++..
T Consensus 370 ~l~~i-sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~--~p~~-----G~i~~~g~ 417 (598)
T 3qf4_B 370 VLKDI-TFHIKPGQKVALVGPTGSGKTTIVNLLMRFY--DVDR-----GQILVDGI 417 (598)
T ss_dssp SCCSE-EEECCTTCEEEEECCTTSSTTHHHHHHTTSS--CCSE-----EEEEETTE
T ss_pred cccce-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCc--CCCC-----eEEEECCE
Confidence 44443 3468999999999999999999998887654 2222 34666654
No 114
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.82 E-value=8.3e-05 Score=62.33 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=32.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.+..+.|+||+|+|||+++..++.... ..+. .++|++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~---~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN---ELER---RSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH---HTTC---CEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCC---eEEEEEHH
Confidence 678999999999999999999988764 2233 78898865
No 115
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.80 E-value=0.00042 Score=64.29 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=52.9
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
++.++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+.+++.+.+. ..++ -++|.-..
T Consensus 126 ~~~~r~~~~e~l~TGir~ID~l~--pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~--~~~~---v~V~~~iG 191 (482)
T 2ck3_D 126 EFVEMSVEQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAK--AHGG---YSVFAGVG 191 (482)
T ss_dssp CGGGCCCCCCEECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHTTT--TCSS---EEEEEEES
T ss_pred chHHhcccCcCCccceEEEeccc--ccccCCeeeeecCCCCChHHHHHHHHHhhHh--hCCC---EEEEEECC
Confidence 45666777889999999999987 5779999999999999999999999998631 1223 57776543
No 116
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.80 E-value=5.5e-05 Score=68.23 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=24.8
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+|+++.|+||+||||||++..++...
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4677899999999999999999888775
No 117
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.79 E-value=0.0003 Score=65.49 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=54.3
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.+..++....+.+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+.+. ..++ .++|.-..
T Consensus 137 p~~~~r~~~~e~l~TGirvID~l~--pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~--~~~~---v~V~~~iG 203 (498)
T 1fx0_B 137 PAFTQLDTKLSIFETGIKVVNLLA--PYRRGGKIGLFGGAGVGKTVLIMELINNIAK--AHGG---VSVFGGVG 203 (498)
T ss_dssp CCGGGCCCCCCCCCCSCTTHHHHS--CCCTTCCEEEEECSSSSHHHHHHHHHHHTTT--TCSS---CEEEEEES
T ss_pred CchhhhcccccccccceeEeeeec--ccccCCeEEeecCCCCCchHHHHHHHHHHHh--hCCC---EEEEEEcc
Confidence 356777777899999999999987 5789999999999999999999999998631 1233 67777544
No 118
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.75 E-value=1.2e-05 Score=77.40 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=35.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+++ +--+++|+++.|+||+|||||||+..++... ++.. +.++++..
T Consensus 356 ~l~~i-sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~--~p~~-----G~i~~~g~ 403 (578)
T 4a82_A 356 ILKDI-NLSIEKGETVAFVGMSGGGKSTLINLIPRFY--DVTS-----GQILIDGH 403 (578)
T ss_dssp SEEEE-EEEECTTCEEEEECSTTSSHHHHHTTTTTSS--CCSE-----EEEEETTE
T ss_pred ceeee-EEEECCCCEEEEECCCCChHHHHHHHHhcCC--CCCC-----cEEEECCE
Confidence 45554 4468999999999999999999998777654 2222 35677654
No 119
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.75 E-value=5.5e-05 Score=71.98 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=24.7
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++|+++.|+||+|||||||+..++...
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999998887753
No 120
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.74 E-value=0.00042 Score=63.84 Aligned_cols=43 Identities=26% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
++.++.|+|++|+||||++..++.... ..|+ +|++++.+ .+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~---~Vllvd~D-~~r~ 139 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGR---RPLLVAAD-TQRP 139 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTC---CEEEEECC-SSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC---eEEEeecc-ccCc
Confidence 688999999999999999999998875 4465 89999976 4444
No 121
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.74 E-value=0.00019 Score=61.22 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
|++...-+.|+||||+|||+++..++.... . ..++++...
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~------~---~~~~~~~~~ 74 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQ------V---PFLAMAGAE 74 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHT------C---CEEEEETTT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC------C---CEEEechHH
Confidence 556667789999999999999999987652 1 577787653
No 122
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.74 E-value=4e-05 Score=61.56 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
....+.|+||+|+|||+++..++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45577999999999999999998875
No 123
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.73 E-value=7e-05 Score=74.22 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=70.1
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEe
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQS 112 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~ 112 (302)
.|+.+-.=++|+||||+|||+|+..+|..+ |- ..+++++.. +...
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~el------g~---~~~~v~~~~---------l~sk----------------- 277 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET------GA---FFFLINGPE---------IMSK----------------- 277 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTT------TC---EEEEEEHHH---------HHSS-----------------
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHh------CC---eEEEEEhHH---------hhcc-----------------
Confidence 367666779999999999999999887654 21 566676431 1100
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEe
Q 022155 113 VHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTN 192 (302)
Q Consensus 113 ~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n 192 (302)
... +-...+..+-+... .....+|+||.+.+++...-... ++.. ..++.+++..+..+....++.||.++
T Consensus 278 ~~g--ese~~lr~lF~~A~-----~~~PsIIfIDEiDal~~~r~~~~-~~~~--~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 278 LAG--ESESNLRKAFEEAE-----KNAPAIIFIDELDAIAPKREKTH-GEVE--RRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp CTT--HHHHHHHHHHHHHT-----TSCSEEEEEESGGGTCCTTTTCC-CTTH--HHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred cch--HHHHHHHHHHHHHH-----HcCCeEEEEehhcccccccCCCC-ChHH--HHHHHHHHHHHhcccccCCEEEEEec
Confidence 001 11112222222221 13459999999999875322221 1222 23456677777776667788877765
Q ss_pred cccccCC
Q 022155 193 QVVDLME 199 (302)
Q Consensus 193 ~~~~~~~ 199 (302)
.-.+.++
T Consensus 348 N~~d~LD 354 (806)
T 3cf2_A 348 NRPNSID 354 (806)
T ss_dssp SSTTTSC
T ss_pred CChhhcC
Confidence 5444433
No 124
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.71 E-value=0.00015 Score=65.44 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=24.8
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++..+..-+.|+||||+|||++|..++...
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 344555668999999999999999998875
No 125
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=97.70 E-value=0.00014 Score=65.66 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=46.4
Q ss_pred CCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 17 TEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 17 ~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+.+++.+... ... +..|+|+-..
T Consensus 156 ~e~~~tGiraID~l~--PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~--~~~--dv~~V~~lIG 214 (427)
T 3l0o_A 156 TDPKIYSTRLIDLFA--PIGKGQRGMIVAPPKAGKTTILKEIANGIAE--NHP--DTIRIILLID 214 (427)
T ss_dssp CSTTCHHHHHHHHHS--CCBTTCEEEEEECTTCCHHHHHHHHHHHHHH--HCT--TSEEEEEECS
T ss_pred ccchhccchhhhhcc--cccCCceEEEecCCCCChhHHHHHHHHHHhh--cCC--CeEEEEEEec
Confidence 378899999999987 5779999999999999999999999887531 111 2267776644
No 126
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=97.70 E-value=0.00035 Score=66.06 Aligned_cols=128 Identities=12% Similarity=0.079 Sum_probs=80.0
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHH
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRR 88 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~r 88 (302)
++.++....+.+.||+..+|-++ -+-+|+-..|.|++|+|||+|+.+++.+.. .+ -|+|+-.... .+.
T Consensus 205 p~~~R~~~~epl~TGirvID~l~--PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~-----~~---v~V~~~iGER--~~E 272 (600)
T 3vr4_A 205 PIKQKLNPDVPMITGQRVIDTFF--PVTKGGAAAVPGPFGAGKTVVQHQIAKWSD-----VD---LVVYVGCGER--GNE 272 (600)
T ss_dssp CCSEEECCCSBCCCCCHHHHHHS--CCBTTCEEEEECCTTSCHHHHHHHHHHHSS-----CS---EEEEEEEEEC--HHH
T ss_pred chhhccCCCceecccchhhhccC--CccCCCEEeeecCCCccHHHHHHHHHhccC-----CC---EEEEEEeccc--HHH
Confidence 35566677899999999999987 578999999999999999999999987742 22 5777664432 344
Q ss_pred HHHHHHHhCCC----CCCCCCCcEEE-EeCCC-H--HHHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 89 LHQLSHTFRPS----NDHNPCDYIFV-QSVHS-V--DQLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 89 l~~i~~~~~~~----~~~~~l~~i~~-~~~~~-~--~~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
..++...+... .-...+++..+ ....+ . ...... -..+.+++.+ .+.--|+++||++.+.
T Consensus 273 v~e~~~~~~el~d~~~G~~~m~rtvvV~~tsd~p~~~R~~~~~~altiAEyfrd----~G~dVLl~~Ds~tR~A 342 (600)
T 3vr4_A 273 MTDVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTGITIAEYFRD----MGYDVAIMADSTSRWA 342 (600)
T ss_dssp HHHHHHHTTTCBCTTTCSBGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEECHHHHH
T ss_pred HHHHHHHHHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCCCEEEEecchHHHH
Confidence 55555554321 11234555433 33222 1 111111 1133444544 2344678999999654
No 127
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.67 E-value=0.00014 Score=59.52 Aligned_cols=110 Identities=16% Similarity=0.100 Sum_probs=66.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC--CCHHHHHHHHHHhCCCCCCCCCCcEEEEeCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP--FPMRRLHQLSHTFRPSNDHNPCDYIFVQSVH 114 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~--~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~ 114 (302)
.|++..|+|+.|+|||+.+++.+.+.. ..+. +|+|+..+-. +...-...+... .+.+ ...
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~---~~~~---kvl~~kp~~D~R~~~~i~S~~g~~---------~~A~---~~~ 80 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQ---IAQY---KCLVIKYAKDTRYSSSFCTHDRNT---------MEAL---PAC 80 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHH---HTTC---CEEEEEETTCCCGGGSCCHHHHHH---------SEEE---EES
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH---HcCC---eEEEEccccCccchhhhhhccCCc---------ccce---ecC
Confidence 589999999999999999999998875 3343 8999986522 111000111111 0111 223
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecc
Q 022155 115 SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194 (302)
Q Consensus 115 ~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~ 194 (302)
+..++.+ . . .++++|+||.++.+ .+ + ...+..++ +.++.||+...-
T Consensus 81 ~~~d~~~---~----~-------~~~DvIlIDEaQFf--k~--------~---------ve~~~~L~-~~gk~VI~~GL~ 126 (195)
T 1w4r_A 81 LLRDVAQ---E----A-------LGVAVIGIDEGQFF--PD--------I---------VEFCEAMA-NAGKTVIVAALD 126 (195)
T ss_dssp SGGGGHH---H----H-------HTCSEEEESSGGGC--TT--------H---------HHHHHHHH-HTTCEEEEEEES
T ss_pred CHHHHHH---h----c-------cCCCEEEEEchhhh--HH--------H---------HHHHHHHH-HCCCeEEEEecc
Confidence 3333322 1 2 14699999999985 21 1 12235555 679999999876
Q ss_pred cccC
Q 022155 195 VDLM 198 (302)
Q Consensus 195 ~~~~ 198 (302)
.+-.
T Consensus 127 ~DF~ 130 (195)
T 1w4r_A 127 GTFQ 130 (195)
T ss_dssp BCTT
T ss_pred cccc
Confidence 6533
No 128
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.67 E-value=0.0001 Score=65.51 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=30.2
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
++..+..-+.|+||||+|||++|..++.... . .+++++.
T Consensus 46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~~------~---~~~~v~~ 84 (322)
T 3eie_A 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEAN------S---TFFSVSS 84 (322)
T ss_dssp TTCCCCCEEEEECSSSSCHHHHHHHHHHHHT------C---EEEEEEH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHHC------C---CEEEEch
Confidence 4555667799999999999999999987642 1 5677764
No 129
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.67 E-value=0.0001 Score=64.84 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=34.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.+|+++.|+|++|+||||++..++..... ..|. +|++++.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G~---~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKHK---KIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTCC---CEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcCC---EEEEEecCc
Confidence 36899999999999999999999988641 2454 799999764
No 130
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=97.65 E-value=0.00022 Score=66.18 Aligned_cols=132 Identities=11% Similarity=0.146 Sum_probs=78.5
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHH
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRR 88 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~r 88 (302)
+..++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+.++|.......+ + .+..|+|.-.... .+.
T Consensus 125 ~p~~R~~~~e~l~TGir~ID~l~--pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~-~-~~~~~V~~~iGER--~~E 198 (469)
T 2c61_A 125 NPYARLPPKDFIQTGISTIDGTN--TLVRGQKLPIFSASGLPHNEIALQIARQASVPGS-E-SAFAVVFAAMGIT--NEE 198 (469)
T ss_dssp CCBCSCCCCSBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTC-S-SCEEEEEEEEEEC--HHH
T ss_pred CcccccccccccceeeEeeeeee--ccccCCEEEEECCCCCCHHHHHHHHHHHHhhccC-C-CCcEEEEEEccCC--cHH
Confidence 45567777899999999999987 5779999999999999999999999998753111 1 1125777654432 222
Q ss_pred HHHHHHHhCCCCCCCCCCcEEE-EeCCCH---HHHHHH--HHHHHHHHH-hccCCCCCeeEEEEechhhhhh
Q 022155 89 LHQLSHTFRPSNDHNPCDYIFV-QSVHSV---DQLLDI--MPKIESFIK-NSSNSRLPIRLIVIDSIAALFR 153 (302)
Q Consensus 89 l~~i~~~~~~~~~~~~l~~i~~-~~~~~~---~~l~~~--l~~l~~~l~-~~~~~~~~~~lvVIDsi~~~~~ 153 (302)
..++...+.. ...+++..+ ....+. ..+... -..+.+++. + .+.--|+++||++.+..
T Consensus 199 v~e~~~~~~~---~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd----~G~dVLl~~DsltR~A~ 263 (469)
T 2c61_A 199 AQYFMSDFEK---TGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYE----HGMHVLVILTDITNYAE 263 (469)
T ss_dssp HHHHHHHHHH---HSGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHH----HCCEEEEEEECHHHHHH
T ss_pred HHHHHHHHHh---ccCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh----cCCeEEEEEeCHHHHHH
Confidence 3333322211 124455433 332221 111111 112333443 2 23448999999998753
No 131
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.62 E-value=0.00016 Score=60.13 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=32.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
.+|.+..++|+.|+||||.++.++.++. ..|. +|+++..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~---~~g~---kVli~k~ 64 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQ---FAKQ---HAIVFKP 64 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHH---HTTC---CEEEEEC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH---HCCC---EEEEEEe
Confidence 4689999999999999999999999985 4454 7888763
No 132
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.62 E-value=8.8e-05 Score=60.87 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=31.7
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
..|.+..++|+.|+||||.++.++.++. ..|. +|+.+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~---~~g~---kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK---IAKQ---KIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTC---CEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH---HCCC---EEEEEE
Confidence 4588999999999999999999999985 3444 777775
No 133
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.61 E-value=0.00015 Score=63.64 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=34.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+|+++.|+|++|+||||++..+|.... ..|+ +|++++.+-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~---~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGR---RPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTC---CEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC---eEEEecCCc
Confidence 689999999999999999999998874 4565 899999763
No 134
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.61 E-value=0.00021 Score=63.23 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=31.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
..+..+.|+||||+|||+++..++.... ..+. .++|++.+
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~---~~~~---~~~~i~~~ 74 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAK---KRGY---RVIYSSAD 74 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHH---HTTC---CEEEEEHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHH---HCCC---EEEEEEHH
Confidence 3567899999999999999999988763 2233 78999855
No 135
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=97.61 E-value=0.00025 Score=66.72 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=79.2
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHH
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRR 88 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~r 88 (302)
++.++....+.+.||+..+|-++ -+-+|+-..|.|++|+|||+|+.+++... . .+ .|+|+-....- +.
T Consensus 200 p~~~R~~~~epl~TGirvID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~-~~---~~V~~~iGER~--~E 267 (588)
T 3mfy_A 200 PYKEKLPPEVPLITGQRVIDTFF--PQAKGGTAAIPGPAGSGKTVTQHQLAKWS----D-AQ---VVIYIGCGERG--NE 267 (588)
T ss_dssp CCSEEECSCSEECCSCHHHHHHS--CEETTCEEEECSCCSHHHHHHHHHHHHHS----S-CS---EEEEEECCSSS--SH
T ss_pred chhhhccCCcccccCcchhhccC--CcccCCeEEeecCCCCCHHHHHHHHHhcc----C-CC---EEEEEEecccH--HH
Confidence 35566667889999999999987 57799999999999999999999987764 2 22 68887765433 23
Q ss_pred HHHHHHHhCCC----CCCCCCCcEEE-EeCCCHH---HHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 89 LHQLSHTFRPS----NDHNPCDYIFV-QSVHSVD---QLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 89 l~~i~~~~~~~----~~~~~l~~i~~-~~~~~~~---~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
..++...+... .-...+++..+ ....+.. ..... -..+.+++.+ .+.--|+++||++.+.
T Consensus 268 v~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd----~G~dVLl~~DsltR~A 337 (588)
T 3mfy_A 268 MTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRD----MGYDVALMADSTSRWA 337 (588)
T ss_dssp HHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHHHH----TTCEEEEEEECTTTCC
T ss_pred HHHHHHHHHHhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCCCEEEeecchHHHH
Confidence 44444443221 11123455433 3332211 11111 1123344444 2444788999999754
No 136
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=97.59 E-value=0.00027 Score=65.21 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=52.8
Q ss_pred cccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 8 QNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 8 ~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.+..++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+.+++...... .++.+..|+|.-..
T Consensus 123 p~p~~R~~~~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~--~d~~~~~~V~~~iG 192 (465)
T 3vr4_D 123 INPIARDYPDEFIQTGISAIDHLN--TLVRGQKLPVFSGSGLPHKELAAQIARQATVL--DSSDDFAVVFAAIG 192 (465)
T ss_dssp BCTTTEECCCCBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHCBCS--SCSSCEEEEEEEEE
T ss_pred cCchhccCcccccccCceEEeccc--ccccCCEEEEeCCCCcChHHHHHHHHHHHHhc--cCCCceEEEEEEec
Confidence 345666677889999999999987 57789999999999999999999998876420 11222356776543
No 137
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.57 E-value=1.9e-05 Score=82.84 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=40.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHH
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLH 90 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~ 90 (302)
.|+.+ +--+++|+.+.|+|++||||||++..+.+.+. ... +.++||+.+ .++.+.++
T Consensus 1094 VL~~i-sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~----G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1094 ILKGL-SFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLG----GEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp SEEEE-EEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSS----SEEEETTEETTTBCHHHHH
T ss_pred cccce-eEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCC----CEEEECCEEhhhCCHHHHH
Confidence 45544 44789999999999999999999988877652 223 357887653 34444443
No 138
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.56 E-value=4.5e-05 Score=62.06 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
++++|+++.|+|||||||||++..++... .. ..++++++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~-----g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP----GV-----PKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS----SS-----CEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc----CC-----CeEEEccc
Confidence 57899999999999999999998887641 22 46788765
No 139
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.54 E-value=0.00077 Score=63.45 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=31.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
...++.|+|++|+||||++..++..+. ..|. +|+.++.+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~---~~G~---kVllVd~D 138 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ---RKGW---KTCLICAD 138 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH---HTTC---CEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCC---eEEEEecc
Confidence 356899999999999999999998764 4454 78898876
No 140
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.53 E-value=6.1e-05 Score=78.82 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=35.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+++ +--+++|+++.|+||+|||||||+..++... ++.. +.+++|..
T Consensus 405 vL~~i-sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~--~~~~-----G~i~i~g~ 452 (1284)
T 3g5u_A 405 ILKGL-NLKVKSGQTVALVGNSGCGKSTTVQLMQRLY--DPLD-----GMVSIDGQ 452 (1284)
T ss_dssp SEEEE-EEEECTTCEEEEECCSSSSHHHHHHHTTTSS--CCSE-----EEEEETTE
T ss_pred ceecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCC-----eEEEECCE
Confidence 45554 4578999999999999999999998887654 2222 35777754
No 141
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=97.52 E-value=0.00037 Score=64.29 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=47.6
Q ss_pred ccccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHcc
Q 022155 7 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQ 63 (302)
Q Consensus 7 ~~~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~ 63 (302)
|.+..++....+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+.+++....
T Consensus 118 ~p~p~~R~~~~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 118 PLNPVARRKPEQFIQTGISTIDVMN--TLVRGQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CBCGGGBCCCCCBCBCSCHHHHTTS--CCBTTCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CCChhhccCccccccCcceeeeccc--ccccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 3446677778899999999999987 577999999999999999999999988764
No 142
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.52 E-value=0.00031 Score=73.73 Aligned_cols=151 Identities=12% Similarity=0.130 Sum_probs=82.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC--CCCHHHHHHHHHHhCCCCCC-
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF--PFPMRRLHQLSHTFRPSNDH- 102 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~--~~~~~rl~~i~~~~~~~~~~- 102 (302)
.|+++ +--+++|+.+.|+||+|||||||+..+++.+. ... +.+++|... .++.+.+++-.. +..+++.
T Consensus 433 vL~~i-sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~----G~I~idG~~i~~~~~~~lr~~i~-~v~Q~~~L 503 (1321)
T 4f4c_A 433 ILRGM-NLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLK----GKITIDGVDVRDINLEFLRKNVA-VVSQEPAL 503 (1321)
T ss_dssp SEEEE-EEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSE----EEEEETTEETTTSCHHHHHHHEE-EECSSCCC
T ss_pred eeece-EEeecCCcEEEEEecCCCcHHHHHHHhccccc---ccc----CcccCCCccchhccHHHHhhccc-ccCCccee
Confidence 45554 45789999999999999999999988877652 222 457777642 345555443211 1112221
Q ss_pred ---CCCCcEEEEeC-CCHHHHHHHHHH--HHHHHHhc---------------------------cCCCCCeeEEEEechh
Q 022155 103 ---NPCDYIFVQSV-HSVDQLLDIMPK--IESFIKNS---------------------------SNSRLPIRLIVIDSIA 149 (302)
Q Consensus 103 ---~~l~~i~~~~~-~~~~~l~~~l~~--l~~~l~~~---------------------------~~~~~~~~lvVIDsi~ 149 (302)
.+.+||.+... .+.+++.+.+.. +.+.+..- +. -.+.+++++|+.+
T Consensus 504 f~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl-~~~~~IliLDE~t 582 (1321)
T 4f4c_A 504 FNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL-VRNPKILLLDEAT 582 (1321)
T ss_dssp CSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH-TTCCSEEEEESTT
T ss_pred eCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH-ccCCCEEEEeccc
Confidence 23345544332 344454444322 11121110 00 1245999999988
Q ss_pred hhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccccCCCC
Q 022155 150 ALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVDLMEPN 201 (302)
Q Consensus 150 ~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~~~~~~ 201 (302)
+....+ .++ .+.+.|+++. .+.|+|++.|-.+.+...
T Consensus 583 SaLD~~--------te~-----~i~~~l~~~~--~~~T~iiiaHrls~i~~a 619 (1321)
T 4f4c_A 583 SALDAE--------SEG-----IVQQALDKAA--KGRTTIIIAHRLSTIRNA 619 (1321)
T ss_dssp TTSCTT--------THH-----HHHHHHHHHH--TTSEEEEECSCTTTTTTC
T ss_pred ccCCHH--------HHH-----HHHHHHHHHh--CCCEEEEEcccHHHHHhC
Confidence 865322 111 2334445544 378888888865555443
No 143
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.51 E-value=0.00094 Score=60.77 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=29.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+..-+.|+||||+|||++|..++... +. .++++++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~------~~---~~~~v~~~~ 183 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES------NA---TFFNISAAS 183 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT------TC---EEEEECSCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh------cC---cEEEeeHHH
Confidence 46789999999999999999997663 22 677887653
No 144
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.50 E-value=0.00029 Score=70.93 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=25.7
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++.|+++.|.||+|+||||++.+++...
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 46789999999999999999999887654
No 145
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.50 E-value=0.00053 Score=64.46 Aligned_cols=117 Identities=12% Similarity=0.152 Sum_probs=64.5
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
|+++..-+.|+||||+|||++|..++... +. ..+++++.. +... ...
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~------~~---~fv~vn~~~---------l~~~--------~~g------- 280 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET------GA---FFFLINGPE---------IMSK--------LAG------- 280 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHC------SS---EEEEEEHHH---------HHTS--------CTT-------
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHh------CC---CEEEEEchH---------hhhh--------hcc-------
Confidence 46677779999999999999999987664 22 677787431 1100 000
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEec
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQ 193 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~ 193 (302)
.....+..++.. ... ....+|+||.+..+....-... ++... .++..+++.|..+....++.||.+++
T Consensus 281 ~~~~~~~~~f~~----A~~-----~~p~iLfLDEId~l~~~~~~~~-~~~~~--~~~~~LL~~ld~~~~~~~v~vIaaTn 348 (489)
T 3hu3_A 281 ESESNLRKAFEE----AEK-----NAPAIIFIDELDAIAPKREKTH-GEVER--RIVSQLLTLMDGLKQRAHVIVMAATN 348 (489)
T ss_dssp HHHHHHHHHHHH----HHH-----TCSEEEEEESHHHHCBCTTSCC-CHHHH--HHHHHHHHHHHHSCTTSCEEEEEEES
T ss_pred hhHHHHHHHHHH----HHh-----cCCcEEEecchhhhcccccccc-chHHH--HHHHHHHHHhhccccCCceEEEEecC
Confidence 001111222221 122 2348999999999764321111 12222 23445666665554455667776655
Q ss_pred cc
Q 022155 194 VV 195 (302)
Q Consensus 194 ~~ 195 (302)
..
T Consensus 349 ~~ 350 (489)
T 3hu3_A 349 RP 350 (489)
T ss_dssp CG
T ss_pred Cc
Confidence 43
No 146
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.50 E-value=0.00012 Score=63.23 Aligned_cols=35 Identities=11% Similarity=0.003 Sum_probs=30.8
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+. +++|+++.|+||+||||||++..++...
T Consensus 15 ~vl~~i~---i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 15 DKVLELC---HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp THHHHGG---GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHh---hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4677763 8999999999999999999999888875
No 147
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.50 E-value=0.00032 Score=59.82 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+++| +.|+||||+|||+++..++...
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 45666 8999999999999999988764
No 148
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.50 E-value=0.00072 Score=58.91 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=29.1
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.++..+.|+||||+|||+++..++.... . ..+++++.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~------~---~~~~i~~~ 88 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECS------A---TFLNISAA 88 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT------C---EEEEEEST
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC------C---CeEEeeHH
Confidence 3567899999999999999999987641 1 56777754
No 149
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.50 E-value=0.00024 Score=69.53 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=24.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHH
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFC 55 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~ 55 (302)
.|+.+ +--+++|+++.|+||+|||||||+
T Consensus 33 ~L~~v-sl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 33 NLKNI-DVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TCCSE-EEEEETTSEEEEECSTTSSHHHHH
T ss_pred ceecc-EEEECCCCEEEEECCCCCCHHHHh
Confidence 45554 446899999999999999999996
No 150
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.49 E-value=0.00076 Score=68.02 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+..|+++.|.||+|+||||++.+++...
T Consensus 658 ~~~~g~i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 658 EKDKQMFHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp ETTTBCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999986554
No 151
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.48 E-value=7.1e-05 Score=62.03 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+++|+++.|+||+|||||||+..++...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999999988764
No 152
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=8.6e-05 Score=60.10 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|-.+|+++.|+||+|||||||+..++...
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34578999999999999999999988764
No 153
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.46 E-value=6.7e-05 Score=62.83 Aligned_cols=36 Identities=17% Similarity=-0.024 Sum_probs=24.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|+||+|||||||+..++...
T Consensus 12 ~l~~i-sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVP-RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCC-ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45554 4568899999999999999999999888764
No 154
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.46 E-value=0.00011 Score=64.73 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=34.1
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
+.+|+++.|+||+||||||++..++.... ..+| +|.+.+ ...+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g---~V~l~g-~d~~r~ 141 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGT---KVLMAA-GDTFRA 141 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTC---CEEEEC-CCCSCH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCC---eEEEEe-ecccch
Confidence 56899999999999999999999998864 3344 555554 445543
No 155
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.45 E-value=0.00082 Score=60.47 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=29.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.+..-+.|+||||+|||++|..++... +. .++++++.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~------~~---~~~~i~~~ 151 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS------GA---TFFSISAS 151 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT------TC---EEEEEEGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc------CC---eEEEEehH
Confidence 456679999999999999999998764 22 67778764
No 156
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.45 E-value=0.00031 Score=70.08 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=26.3
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+++++..+.|+||||||||+++..++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 78999999999999999999999887653
No 157
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=0.00039 Score=62.16 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHc
Q 022155 41 TELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+||+|+||||++..++...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998864
No 158
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.44 E-value=0.00078 Score=58.35 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
-++.| +.|+||||+|||+|+..++.... . ..++++..
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~----~-----~~i~i~g~ 78 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESG----L-----NFISVKGP 78 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTT----C-----EEEEEETT
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcC----C-----CEEEEEcH
Confidence 45566 99999999999999999987642 1 46777754
No 159
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.44 E-value=0.0001 Score=60.69 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=30.1
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~ 83 (302)
.++|.++.|.|++||||||++..++... ..++++++.-
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----------g~~~i~~d~~ 63 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET-----------GLEFAEADAF 63 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH-----------CCEEEEGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh-----------CCeEEccccc
Confidence 3579999999999999999999887754 2578887653
No 160
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=97.44 E-value=0.00038 Score=65.49 Aligned_cols=128 Identities=11% Similarity=0.066 Sum_probs=78.4
Q ss_pred ccccCCCCCCccccCChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHH
Q 022155 9 NLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRR 88 (302)
Q Consensus 9 ~l~~~~~~~~~i~tG~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~r 88 (302)
++.++....+.+.||+..+|-++ -+-+|+-..|.|++|+|||+++.+++.+.. .+ -|+|.-.... .+.
T Consensus 194 p~~~R~~~~epl~TGirvID~l~--PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~-----~~---v~V~~~iGER--~~E 261 (578)
T 3gqb_A 194 PVQRKLDPNTPFLTGMRILDVLF--PVAMGGTAAIPGPFGSGKSVTQQSLAKWSN-----AD---VVVYVGSGER--GNE 261 (578)
T ss_dssp CCSEEECSCSEECCSCHHHHTTS--CEETTCEEEECCCTTSCHHHHHHHHHHHSS-----CS---EEEEEEEEEC--HHH
T ss_pred ChHHhccCCCcccccchhhhhcc--cccCCCEEeeeCCCCccHHHHHHHHHhccC-----CC---EEEEEEeccc--HHH
Confidence 35566677899999999999886 577999999999999999999999987742 22 5777664432 334
Q ss_pred HHHHHHHhCCC----CCCCCCCcEEE-EeC-CCHH--HHHHH--HHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 89 LHQLSHTFRPS----NDHNPCDYIFV-QSV-HSVD--QLLDI--MPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 89 l~~i~~~~~~~----~~~~~l~~i~~-~~~-~~~~--~l~~~--l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
..++...+... .-...+++..+ ... +... ..... -..+.+++.+ .+.--|+++||++.+.
T Consensus 262 v~e~~~~~~el~d~~~G~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyfrd----~G~dVLl~~Ds~tR~A 331 (578)
T 3gqb_A 262 MTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRD----QGFSVALMADSTSRWA 331 (578)
T ss_dssp HHHHHTTGGGCBCTTTSSBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHH----TTCEEEECCSCHHHHH
T ss_pred HHHHHHHHHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHH----cCCCEEEEecChHHHH
Confidence 44444443210 11234555433 322 2211 11111 1133444444 2344678899999654
No 161
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.43 E-value=9.6e-05 Score=58.72 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=27.1
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
--+++|+++.|.||+|+|||||+..++...
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 367999999999999999999999988874
No 162
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.40 E-value=0.00037 Score=64.76 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=30.9
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
++..+..-+.|+||||+|||++|..++.... +. .+++++..
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-----~~---~~~~v~~~ 202 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NS---TFFSISSS 202 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-----SS---EEEEECCC
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CC---CEEEEeHH
Confidence 3455667899999999999999999988751 21 56677654
No 163
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.39 E-value=0.00011 Score=60.31 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.+|+++.|+||+||||||++..++...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4679999999999999999999888763
No 164
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.38 E-value=0.00017 Score=59.34 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=36.3
Q ss_pred CChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 23 GCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 23 G~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
++...|+.- --.++|.++.|.|++||||||++..++.... ..|. .++|+|++
T Consensus 11 ~~~~~~~~~-~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~---~~~~~d~d 62 (200)
T 3uie_A 11 SVEKVDRQR-LLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGK---LCYILDGD 62 (200)
T ss_dssp CCCHHHHHH-HHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTC---CEEEEEHH
T ss_pred ccCHHHHHH-hcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCc---eEEEecCc
Confidence 344455431 1246899999999999999999999988752 2342 34688854
No 165
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.37 E-value=0.0018 Score=54.42 Aligned_cols=113 Identities=13% Similarity=0.070 Sum_probs=64.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSV 116 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~ 116 (302)
.|.+..++|+.|+||||.+++.+.++. ..|. +|+++......... ..+...... ....+ ...+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~---~~g~---kvli~kp~~D~Ryg--~~i~sr~G~-----~~~a~---~i~~~ 81 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ---IAQY---KCLVIKYAKDTRYS--SSFCTHDRN-----TMEAL---PACLL 81 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH---TTTC---CEEEEEETTCCCC------------------CEEE---EESSG
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH---HCCC---eEEEEeecCCccch--HHHHhhcCC-----eeEEE---ecCCH
Confidence 589999999999999999999999985 3444 78877643221111 122222110 01111 12232
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecccc
Q 022155 117 DQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQVVD 196 (302)
Q Consensus 117 ~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~~~ 196 (302)
+++. .. + .++++|+||+++.+. + +.++++.|. ..++.||++..-.+
T Consensus 82 ~di~---~~----~-------~~~dvViIDEaQF~~---------~-------v~el~~~l~----~~gi~VI~~GL~~D 127 (234)
T 2orv_A 82 RDVA---QE----A-------LGVAVIGIDEGQFFP---------D-------IVEFCEAMA----NAGKTVIVAALDGT 127 (234)
T ss_dssp GGGH---HH----H-------TTCSEEEESSGGGCT---------T-------HHHHHHHHH----HTTCEEEEECCSBC
T ss_pred HHHH---HH----h-------ccCCEEEEEchhhhh---------h-------HHHHHHHHH----hCCCEEEEEecccc
Confidence 3322 21 1 146999999999852 1 123344332 37999999988765
Q ss_pred cCC
Q 022155 197 LME 199 (302)
Q Consensus 197 ~~~ 199 (302)
-..
T Consensus 128 F~~ 130 (234)
T 2orv_A 128 FQR 130 (234)
T ss_dssp TTS
T ss_pred ccc
Confidence 333
No 166
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.37 E-value=6.5e-05 Score=64.27 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=35.3
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++... ++.. ..++++..
T Consensus 24 vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~-----G~I~i~g~ 71 (247)
T 2ff7_A 24 ILDNI-NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY--IPEN-----GQVLIDGH 71 (247)
T ss_dssp EEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHTTSS--CCSE-----EEEEETTE
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCC-----cEEEECCE
Confidence 45554 4568999999999999999999998887753 2222 34666654
No 167
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.36 E-value=0.00011 Score=64.81 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=31.1
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ .-.+++|+++.|+||+|||||||+..|+...
T Consensus 114 ~vL~~v-sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLW-LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHH-HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccc-eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345554 3579999999999999999999999988874
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.35 E-value=0.00048 Score=63.90 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+..+.|+||||+|||+|+..++.... ....+. .++|++++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~-~~~~~~---~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDL---RVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH-HHCCSS---CEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCC---eEEEeeHH
Confidence 56799999999999999998887652 101132 78999865
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.34 E-value=0.00051 Score=65.06 Aligned_cols=42 Identities=17% Similarity=0.016 Sum_probs=32.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR 87 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~ 87 (302)
....+.|+||||+|||++|..++... +. .++++++.......
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l------~~---~~i~in~s~~~~~~ 117 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL------GY---DILEQNASDVRSKT 117 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT------TC---EEEEECTTSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc------CC---CEEEEeCCCcchHH
Confidence 45789999999999999999998764 22 78888876544433
No 170
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.34 E-value=6.4e-05 Score=63.87 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=30.4
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--+++|+++.|+||+|||||||+..++...
T Consensus 19 ~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 19 PTLNGI-TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CSEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ceeeee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345554 4578999999999999999999998887654
No 171
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.34 E-value=0.0018 Score=66.00 Aligned_cols=23 Identities=17% Similarity=0.119 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHH
Q 022155 38 NSITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~ 60 (302)
|+++.|.||+|+||||++.++..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 89999999999999999999843
No 172
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.33 E-value=0.00018 Score=64.80 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=34.1
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM 86 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~ 86 (302)
+.+|+++.|+||+||||||++..++.... ..+| +|.+.. ...+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G---~V~l~g-~D~~r~ 198 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGT---KVLMAA-GDTFRA 198 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTC---CEEEEC-CCCSCH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCC---EEEEec-cccccc
Confidence 56899999999999999999999998763 3344 555554 445543
No 173
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.33 E-value=0.0013 Score=58.19 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=27.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
|.++.|+||+|+|||+|+.+++... +++|++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~-----------~~~~~~~~ 63 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER-----------PGILIDCR 63 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS-----------SEEEEEHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc-----------CcEEEEee
Confidence 4799999999999999999987653 27899865
No 174
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.33 E-value=7.8e-05 Score=63.00 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=30.3
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 22 ~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 22 PVLKDI-NFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CSEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345554 4568999999999999999999998887653
No 175
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.32 E-value=0.00069 Score=61.08 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=52.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCc-CCCC-CCeEEEEeCCCCC-CH-HHHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSS-HGGL-SASSLYLHTEFPF-PM-RRLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~-~gg~-~~~vlyid~e~~~-~~-~rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
+..+.|+||+|+|||+++..++....-... ..+. ...++|+++.... +. .-+.++...+...... ...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~--------~~~ 116 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVP--------KHG 116 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCC--------SSS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCC--------CCC
Confidence 458999999999999999999876520000 0001 1278999865422 33 2234444433111100 001
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
.+..+ ++..+...+.. .+. +||||.+..+.
T Consensus 117 ~~~~~---~~~~l~~~l~~-----~~~-vlilDEi~~l~ 146 (384)
T 2qby_B 117 INLGE---YIDKIKNGTRN-----IRA-IIYLDEVDTLV 146 (384)
T ss_dssp SCTHH---HHHHHHHHHSS-----SCE-EEEEETTHHHH
T ss_pred CCHHH---HHHHHHHHhcc-----CCC-EEEEECHHHhc
Confidence 11222 33344444432 333 99999999865
No 176
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.32 E-value=9.1e-05 Score=64.24 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=30.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 34 vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 34 VLQGL-TFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45554 4568999999999999999999998887754
No 177
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.31 E-value=0.00048 Score=68.31 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=25.5
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+..=++|+||||+|||.+|..+|..+
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence 467666668999999999999999998765
No 178
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.31 E-value=0.0052 Score=50.29 Aligned_cols=130 Identities=13% Similarity=0.128 Sum_probs=69.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC-CCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCC-
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP-FPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHS- 115 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~-~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~- 115 (302)
...+.|++.+|.||||.|.-++..++ ..|. +|+++..-.. ...... .+...+. ......-..+ ......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~---rV~~vQF~Kg~~~~gE~-~~l~~L~-v~~~~~g~gf-~~~~~~~ 98 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV---GHGK---NVGVVQFIKGTWPNGER-NLLEPHG-VEFQVMATGF-TWETQNR 98 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH---HTTC---CEEEEESSCCSSCCHHH-HHHGGGT-CEEEECCTTC-CCCGGGH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---HCCC---eEEEEEeeCCCCCccHH-HHHHhCC-cEEEEccccc-ccCCCCc
Confidence 34788888899999999999999886 5665 8999965432 221111 1222221 0000000010 011111
Q ss_pred ---HHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEe
Q 022155 116 ---VDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTN 192 (302)
Q Consensus 116 ---~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n 192 (302)
.......+..+.+.+. ...+++||+|.+.......+-. ...++..|.. +-.+..||+|.
T Consensus 99 ~~~~~~a~~~l~~a~~~l~-----~~~yDlvILDEi~~al~~g~l~-----------~~ev~~~l~~--Rp~~~~vIlTG 160 (196)
T 1g5t_A 99 EADTAACMAVWQHGKRMLA-----DPLLDMVVLDELTYMVAYDYLP-----------LEEVISALNA--RPGHQTVIITG 160 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----CTTCSEEEEETHHHHHHTTSSC-----------HHHHHHHHHT--SCTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHh-----cCCCCEEEEeCCCccccCCCCC-----------HHHHHHHHHh--CcCCCEEEEEC
Confidence 1122334444555554 3678999999999865433221 1234444432 33467888886
Q ss_pred cc
Q 022155 193 QV 194 (302)
Q Consensus 193 ~~ 194 (302)
..
T Consensus 161 r~ 162 (196)
T 1g5t_A 161 RG 162 (196)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 179
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.31 E-value=0.0003 Score=57.92 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=32.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
-.++|.++.|.|++||||||++..++.... ..++ .+++++.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~---~~~~---~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR---EQGI---SVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH---HTTC---CEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCC---eEEEeccC
Confidence 356789999999999999999998887652 2344 67777654
No 180
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.30 E-value=7.7e-05 Score=78.07 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=35.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.|+.+ +--+++|+++.|+||+|||||||+..++... ++.. +.+++|...
T Consensus 1048 ~l~~v-sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~--~p~~-----G~I~i~g~~ 1096 (1284)
T 3g5u_A 1048 VLQGL-SLEVKKGQTLALVGSSGCGKSTVVQLLERFY--DPMA-----GSVFLDGKE 1096 (1284)
T ss_dssp SBSSC-CEEECSSSEEEEECSSSTTHHHHHHHHTTSS--CCSE-----EEEESSSSC
T ss_pred eecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCC-----CEEEECCEE
Confidence 34443 3468999999999999999999998887754 2222 356776553
No 181
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.30 E-value=0.00015 Score=59.49 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=24.4
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+++|.++.|+||+||||||++..++...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999998887654
No 182
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.29 E-value=0.00017 Score=57.73 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=29.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.+|.++.|+|++||||||++..++... ..++++++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----------CcEEEeCcc
Confidence 458899999999999999999887653 247788764
No 183
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.29 E-value=0.00048 Score=64.81 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
-+++| +.|+||||+|||+|+..++.... ...++++..
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~~---------~~~i~i~g~ 98 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---------VPFITASGS 98 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHTT---------CCEEEEEGG
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHhC---------CCEEEEehh
Confidence 35566 89999999999999999887642 157888764
No 184
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.28 E-value=0.00084 Score=62.07 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=33.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcC-CCCCCeEEEEeCCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSH-GGLSASSLYLHTEF 82 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~-gg~~~~vlyid~e~ 82 (302)
..++.++|++|+||||++..+|..+. .. |. +|+.+|++-
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~---~~~G~---kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLR---EKHKK---KVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHH---HTSCC---CEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HhcCC---eEEEEecCC
Confidence 46899999999999999999998875 44 55 899999884
No 185
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.28 E-value=0.00017 Score=60.46 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-.++|+++.|+||+|||||||+..++...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999999999888764
No 186
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.27 E-value=0.00014 Score=60.23 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=25.7
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++|+++.|+||+|||||||+..++...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999998875
No 187
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.26 E-value=0.00016 Score=61.49 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=24.4
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
..|+.+ +--+++|.++.|.||+||||||++..++..
T Consensus 13 ~~l~~i-sl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 13 LGTENL-YFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeecce-eccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456665 557889999999999999999999988775
No 188
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.25 E-value=0.00024 Score=58.68 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++|.++.|.||+||||||++..++...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999888764
No 189
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0032 Score=55.63 Aligned_cols=108 Identities=16% Similarity=0.074 Sum_probs=60.4
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCC-CCeEEEEeCCCCCCH-HHHHHHHHHhCCCCCCCC
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGL-SASSLYLHTEFPFPM-RRLHQLSHTFRPSNDHNP 104 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~-~~~vlyid~e~~~~~-~rl~~i~~~~~~~~~~~~ 104 (302)
|...+.++ .+..+.|+||||+|||+++..++....-....++. .-.++||++....++ ..+..+...+....
T Consensus 36 L~~~i~~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~---- 109 (318)
T 3te6_A 36 IYDSLMSS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKEN---- 109 (318)
T ss_dssp HHHHHHTT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC----
T ss_pred HHHHhcCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC----
Confidence 33444443 56778999999999999999998876311111211 126789998764444 44566666653221
Q ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 105 CDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 105 l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
+ ......+.+...+..+ ... ....-+|++|.+..+.
T Consensus 110 ---~--~~~~~~~~L~~~f~~~---~~~----~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 110 ---L--CGDISLEALNFYITNV---PKA----KKRKTLILIQNPENLL 145 (318)
T ss_dssp -------CCCCHHHHHHHHHHS---CGG----GSCEEEEEEECCSSSC
T ss_pred ---C--CchHHHHHHHHHHHHh---hhc----cCCceEEEEecHHHhh
Confidence 0 1112222232222221 011 2356899999998865
No 190
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.22 E-value=0.00099 Score=60.56 Aligned_cols=100 Identities=10% Similarity=0.091 Sum_probs=55.9
Q ss_pred CCcEEEE--EeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHH-HHHHHHHHhCCCCCCCCCCcEEEEeC
Q 022155 37 CNSITEL--VAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMR-RLHQLSHTFRPSNDHNPCDYIFVQSV 113 (302)
Q Consensus 37 ~G~i~ei--~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~-rl~~i~~~~~~~~~~~~l~~i~~~~~ 113 (302)
.+..+.| +||+|+|||+++..++....-.....+....++|+++....... -+.++...+....+. ..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---------~~ 119 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQV---------RG 119 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCC---------TT
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCC---------CC
Confidence 4568888 99999999999999987652100000011268999975444443 345555554321110 01
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhh
Q 022155 114 HSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALF 152 (302)
Q Consensus 114 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~ 152 (302)
.+..++ +..+...+.. .....+||||.+..+.
T Consensus 120 ~~~~~~---~~~l~~~l~~----~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 120 APALDI---LKALVDNLYV----ENHYLLVILDEFQSML 151 (412)
T ss_dssp CCHHHH---HHHHHHHHHH----HTCEEEEEEESTHHHH
T ss_pred CCHHHH---HHHHHHHHHh----cCCeEEEEEeCHHHHh
Confidence 123333 3333334432 1345899999999865
No 191
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.22 E-value=0.00034 Score=56.64 Aligned_cols=48 Identities=23% Similarity=0.170 Sum_probs=33.4
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.||.-+. ..+|.++.|.|++||||||++..++.... ..|+ .+.+++++
T Consensus 3 ~~~~~~~--~~~~~~i~l~G~~GsGKsT~~~~L~~~l~---~~~~---~~~~~~~d 50 (186)
T 2yvu_A 3 ALTTYKC--IEKGIVVWLTGLPGSGKTTIATRLADLLQ---KEGY---RVEVLDGD 50 (186)
T ss_dssp -----CC--CSCCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC---CEEEEEHH
T ss_pred ccccccc--cCCCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCC---eEEEeeHH
Confidence 3555332 35789999999999999999999988753 3344 67888743
No 192
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.21 E-value=0.00016 Score=59.47 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=22.1
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++|+++.|+||+|||||||+..++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999888764
No 193
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.20 E-value=0.00019 Score=62.03 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=29.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++..
T Consensus 35 vl~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 35 ILRGL-SLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45554 456899999999999999999999888774
No 194
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.20 E-value=0.00021 Score=56.98 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.++.|+|++||||||++..++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999887764
No 195
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.18 E-value=0.00018 Score=61.53 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=29.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++..
T Consensus 18 vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 18 ILKGV-NLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45544 446889999999999999999999888774
No 196
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.17 E-value=0.00038 Score=55.95 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=29.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
.+|.++.|.|++||||||++..++.... ..|- .++++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~---~~g~---~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV---CHGI---PCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC---CEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh---hCCC---cEEEECC
Confidence 6799999999999999999998887642 2232 5677773
No 197
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.16 E-value=0.00027 Score=58.02 Aligned_cols=30 Identities=17% Similarity=-0.010 Sum_probs=24.2
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-.+++|.++.|+|++||||||++..++...
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999999998764
No 198
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.15 E-value=0.0011 Score=55.12 Aligned_cols=115 Identities=11% Similarity=0.096 Sum_probs=63.7
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVH 114 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~ 114 (302)
-..|.+..|+|+-|+||||.++..+.++. ..|. +|+.+.....-.. -...+..... ...+ .....
T Consensus 25 ~~~G~I~vitG~M~sGKTT~Llr~~~r~~---~~g~---kvli~kp~~D~R~-~~~~I~Sr~G-----~~~~---a~~v~ 89 (219)
T 3e2i_A 25 YHSGWIECITGSMFSGKSEELIRRLRRGI---YAKQ---KVVVFKPAIDDRY-HKEKVVSHNG-----NAIE---AINIS 89 (219)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHH---HTTC---CEEEEEEC------------CBTT-----BCCE---EEEES
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHH---HcCC---ceEEEEeccCCcc-hhhhHHHhcC-----Ccee---eEEeC
Confidence 35689999999999999998888887774 3343 6776654321100 0112222111 0111 11222
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEEecc
Q 022155 115 SVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVTNQV 194 (302)
Q Consensus 115 ~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~n~~ 194 (302)
+..++.+. +. .+++.|+||+.+.+-. .++..|..++ ..|+.||+..-.
T Consensus 90 ~~~di~~~-------i~------~~~dvV~IDEaQFf~~------------------~~v~~l~~la-~~gi~Vi~~GLd 137 (219)
T 3e2i_A 90 KASEIMTH-------DL------TNVDVIGIDEVQFFDD------------------EIVSIVEKLS-ADGHRVIVAGLD 137 (219)
T ss_dssp SGGGGGGS-------CC------TTCSEEEECCGGGSCT------------------HHHHHHHHHH-HTTCEEEEEEES
T ss_pred CHHHHHHH-------Hh------cCCCEEEEechhcCCH------------------HHHHHHHHHH-HCCCEEEEeecc
Confidence 32333221 11 2569999999887421 2345666777 579999998765
Q ss_pred cc
Q 022155 195 VD 196 (302)
Q Consensus 195 ~~ 196 (302)
.+
T Consensus 138 ~D 139 (219)
T 3e2i_A 138 MD 139 (219)
T ss_dssp BC
T ss_pred cc
Confidence 44
No 199
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.15 E-value=7.4e-05 Score=74.59 Aligned_cols=125 Identities=12% Similarity=0.112 Sum_probs=65.2
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEE
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQ 111 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~ 111 (302)
.-|++++..+.|+||||+|||+++..++..... ..++++...-. +. ++
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~---------~~i~v~~~~l~---------------------~~-~~- 552 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIKGPELL---------------------TM-WF- 552 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC---------CCCCCCCSSST---------------------TC-CT-
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC---------CEEEEechHhh---------------------hh-hc-
Confidence 347889999999999999999999999887521 33444433211 00 00
Q ss_pred eCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Q 022155 112 SVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFLFFKISGMLKAMAVGFGLAVLVT 191 (302)
Q Consensus 112 ~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~l~~l~~~L~~la~~~~~~viv~ 191 (302)
-.....+..++..... ....+++||.+..+....-............++..++..|..+....++.||.+
T Consensus 553 -g~~~~~i~~~f~~a~~---------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~t 622 (806)
T 1ypw_A 553 -GESEANVREIFDKARQ---------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGA 622 (806)
T ss_dssp -TTSSHHHHHHHHHHHH---------HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCC
T ss_pred -CccHHHHHHHHHHHHh---------cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEe
Confidence 0111122223332221 134799999999976432111111112223345566666655556667777777
Q ss_pred ecccccC
Q 022155 192 NQVVDLM 198 (302)
Q Consensus 192 n~~~~~~ 198 (302)
++..+.+
T Consensus 623 TN~~~~l 629 (806)
T 1ypw_A 623 TNRPDII 629 (806)
T ss_dssp CBSCGGG
T ss_pred cCCcccC
Confidence 6644333
No 200
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.14 E-value=0.00019 Score=61.76 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=29.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ +--+++|+++.|.||+|||||||+..++...
T Consensus 35 vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 35 TLKSI-NFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp SEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEee-EEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45554 4568999999999999999999998887753
No 201
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.14 E-value=0.00029 Score=58.36 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=24.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++|.++.|+||+||||||++..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999999888763
No 202
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.14 E-value=0.001 Score=54.45 Aligned_cols=25 Identities=20% Similarity=0.229 Sum_probs=22.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..++.|+|++||||||++..++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999888764
No 203
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.13 E-value=0.00034 Score=56.70 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|++.+.++.|+|+|||||||++..++...
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46678899999999999999999988754
No 204
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.11 E-value=0.00026 Score=58.47 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=30.8
Q ss_pred ChhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 24 CPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 24 ~~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+..|...+. ++|....+.|+||||+|||++|+.++..+
T Consensus 45 ~~~l~~~~~-~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 344555554 68888889999999999999999998764
No 205
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.10 E-value=0.00035 Score=57.56 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
-+++|.++.|+|++||||||++..++.... .+.+++.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------~~~~i~~D~ 55 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------NCSVISQDD 55 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----------TEEEEEGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------CcEEEeCCc
Confidence 467899999999999999999988866431 367777664
No 206
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.08 E-value=0.0017 Score=64.49 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=25.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+++.|.||+|+||||++.+++...
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 689999999999999999999998765
No 207
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.06 E-value=0.0065 Score=57.82 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=55.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH--ccCCCcCCCCCCeEEEEeCCCCC--CHH-HHHHHHHHhCCCCCCCCCCcEEEE
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLS--AQLPSSHGGLSASSLYLHTEFPF--PMR-RLHQLSHTFRPSNDHNPCDYIFVQ 111 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~--~~l~~~~gg~~~~vlyid~e~~~--~~~-rl~~i~~~~~~~~~~~~l~~i~~~ 111 (302)
...++.|+|++|.||||||.+++.. ....... ..++|++..... +.. -+..+...+..........+ .
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~---~ 223 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY----DSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPS---V 223 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB----SEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCC---C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC----CcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccc---c
Confidence 4579999999999999999988851 1122122 268999876643 343 34566665543211000000 0
Q ss_pred eCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhh
Q 022155 112 SVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAA 150 (302)
Q Consensus 112 ~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~ 150 (302)
...+.. .+...+.+.+.. .+--|||+|++..
T Consensus 224 ~~~~~~---~l~~~l~~~L~~-----~kr~LlVLDdv~~ 254 (549)
T 2a5y_B 224 EHVTSV---VLKRMICNALID-----RPNTLFVFDDVVQ 254 (549)
T ss_dssp TTCCHH---HHHHHHHHHHTT-----STTEEEEEEEECC
T ss_pred ccccHH---HHHHHHHHHHcC-----CCcEEEEEECCCC
Confidence 111222 233455566643 2138999999765
No 208
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.06 E-value=0.00014 Score=60.47 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=24.9
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
+++|+++.|.||+|||||||+..++..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999999988876
No 209
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.05 E-value=0.00045 Score=55.98 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHH
Q 022155 38 NSITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~ 60 (302)
|+++.|+||+||||||++..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999998875
No 210
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.05 E-value=0.00019 Score=60.40 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=20.1
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHH-HH
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLT-LS 61 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la-~~ 61 (302)
-+++|+++.|+||+||||||++..++ ..
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC--
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 46889999999999999999998887 55
No 211
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.04 E-value=0.00038 Score=61.60 Aligned_cols=44 Identities=14% Similarity=0.006 Sum_probs=33.4
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+.+|.++.|+||+|||||||+..++.... + ..|. ..+.|+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~-~~G~--~~v~~v~qd~ 130 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA-R-WDHH--PRVDLVTTDG 130 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH-T-STTC--CCEEEEEGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc-c-cCCC--CeEEEEecCc
Confidence 68899999999999999999998887753 2 2231 2567777654
No 212
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.00 E-value=0.0043 Score=58.41 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=32.3
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+..+.-+.|+|.+|||||+++..++.........+. ..++.+|...
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~--v~l~liDpK~ 209 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPED--VRFIMIDPKM 209 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTT--EEEEEECCSS
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCce--EEEEEECCch
Confidence 556789999999999999999998876533212222 2556677553
No 213
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.00 E-value=0.00063 Score=59.97 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=31.9
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHcc-CCCcCCCCCCeEEEEeCCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQ-LPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~-l~~~~gg~~~~vlyid~e~ 82 (302)
..|.++.|+|++|||||||+..++.... .| . +| .+.+++.++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~-~-~G---~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWP-E-HR---RVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTST-T-CC---CEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCC-C-CC---eEEEEecCC
Confidence 7899999999999999999998887641 02 2 23 577777664
No 214
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.98 E-value=0.00035 Score=61.17 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=26.9
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+--+++|+++.|.||+|||||||+..++...
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468899999999999999999998887653
No 215
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.97 E-value=0.00085 Score=54.91 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=30.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
..+.|+||+|+|||+++..++.... ..+. .++|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~---~~~~---~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA---KRNV---SSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH---TTTC---CEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH---HcCC---eEEEEEhH
Confidence 6899999999999999999988764 3343 78888754
No 216
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.97 E-value=0.00042 Score=56.21 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+++.|+||+||||||++..++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999888764
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.95 E-value=0.00054 Score=56.41 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=25.0
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+|.++.|+|||||||||++..++...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5678999999999999999999988764
No 218
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.94 E-value=0.00064 Score=61.65 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=31.8
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
+++|+++.|+||+||||||++..++.... ....| .+++++.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g---~I~~~e~ 173 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSY---HIITIED 173 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCC---EEEEEES
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCc---EEEEecc
Confidence 67899999999999999999999988753 12133 6667663
No 219
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.92 E-value=0.00063 Score=53.91 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.|.|++||||||++..++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988764
No 220
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.88 E-value=0.0044 Score=53.19 Aligned_cols=28 Identities=18% Similarity=0.075 Sum_probs=24.1
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++..-+.|+||||+|||++|..++...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4566789999999999999999998764
No 221
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.87 E-value=0.0065 Score=54.10 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=37.9
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.|+.++.. +.-.++.+.|..|+||||++.++|...+ ..|. +|+.||++.
T Consensus 6 ~l~~~l~~--~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~---~vllid~D~ 54 (334)
T 3iqw_A 6 TLQSILDQ--RSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRR---SVLLLSTDP 54 (334)
T ss_dssp SSHHHHHC--TTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSS---CEEEEECCS
T ss_pred cHHHHhcC--CCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCC---cEEEEECCC
Confidence 34555532 2346888999999999999999998875 4565 999999984
No 222
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.85 E-value=0.0028 Score=62.63 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+++.|.||+|+||||++.+++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 9999999999999999999998865
No 223
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.85 E-value=0.00081 Score=53.75 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=22.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.++.|+|+|||||||++..++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998764
No 224
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.85 E-value=0.0005 Score=59.28 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=27.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.|+.+ +--++ |+++.|.||+|||||||+..++..
T Consensus 20 il~~v-sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 20 SLENI-NLEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEE-EEEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEee-eEEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 34443 44689 999999999999999999888765
No 225
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.85 E-value=0.00075 Score=56.41 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=26.4
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.-+....++.|.|||||||+|.|..|+..+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346788899999999999999999998875
No 226
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.84 E-value=0.0008 Score=57.48 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=24.2
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+|.++.|.||+||||||++..++...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 678999999999999999999888653
No 227
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.84 E-value=0.00056 Score=55.14 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|.++.|.|++||||||++..++...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999988653
No 228
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.82 E-value=0.0011 Score=59.30 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=34.7
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
.|+.+ .--+..|.++.|+|+||+|||||+..++.... ..++ ++.++.
T Consensus 44 ~l~~i-~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g---~v~i~~ 90 (337)
T 2qm8_A 44 LIDAV-LPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGH---KVAVLA 90 (337)
T ss_dssp HHHHH-GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTC---CEEEEE
T ss_pred HHHhC-CcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCC---EEEEEE
Confidence 45544 33578899999999999999999999887653 3344 565554
No 229
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.82 E-value=0.0013 Score=53.14 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.1
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.+.+.++.|+|++||||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999988876
No 230
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.80 E-value=0.0012 Score=60.65 Aligned_cols=45 Identities=20% Similarity=0.123 Sum_probs=33.5
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
.|+.++ ..+|+++.|+||+||||||++..++... +.. .| .++++.
T Consensus 158 ~L~~l~---~~~ggii~I~GpnGSGKTTlL~allg~l--~~~-~g---~I~~~e 202 (418)
T 1p9r_A 158 NFRRLI---KRPHGIILVTGPTGSGKSTTLYAGLQEL--NSS-ER---NILTVE 202 (418)
T ss_dssp HHHHHH---TSSSEEEEEECSTTSCHHHHHHHHHHHH--CCT-TS---CEEEEE
T ss_pred HHHHHH---HhcCCeEEEECCCCCCHHHHHHHHHhhc--CCC-CC---EEEEec
Confidence 455554 3689999999999999999999888765 222 33 566665
No 231
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.80 E-value=0.00067 Score=61.24 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
--+++|+++.|+||+|||||||+..++... +. .. ..+.++.
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~--~~-~~----g~I~ie~ 210 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQEI--PF-DQ----RLITIED 210 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTTS--CT-TS----CEEEEES
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhcC--CC-Cc----eEEEECC
Confidence 346799999999999999999998887764 32 22 4677764
No 232
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.80 E-value=0.0077 Score=55.85 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+.|+||||+|||+++..++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 469999999999999999888764
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.79 E-value=0.0044 Score=50.49 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=30.3
Q ss_pred EEEEE-eCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC
Q 022155 40 ITELV-AESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 40 i~ei~-G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~ 83 (302)
++.|+ +..|+||||++.++|..++ ..|. +|++||.+..
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la---~~g~---~vlliD~D~~ 41 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALS---RSGY---NIAVVDTDPQ 41 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHH---HTTC---CEEEEECCTT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHH---HCCC---eEEEEECCCC
Confidence 45555 6788999999999999876 4565 8999998843
No 234
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.79 E-value=0.00086 Score=57.35 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.|+||+||||||++..++...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998764
No 235
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.78 E-value=0.003 Score=52.89 Aligned_cols=41 Identities=24% Similarity=0.120 Sum_probs=32.7
Q ss_pred CCcE-EEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC
Q 022155 37 CNSI-TELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 37 ~G~i-~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~ 83 (302)
+|++ +.+.|++|+||||++++++...+ ..|. +|++++.+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~---~~G~---~V~v~d~D~q 45 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL---RQGV---RVMAGVVETH 45 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHH---HTTC---CEEEEECCCT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH---HCCC---CEEEEEeCCC
Confidence 4555 77799999999999999999875 5565 7888887753
No 236
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.78 E-value=0.00032 Score=62.55 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+.|+||||+|||||+..++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999998875
No 237
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.77 E-value=0.00097 Score=54.84 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=24.1
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+|+++.|+||+|+|||||+..++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 368999999999999999999988764
No 238
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.77 E-value=0.0011 Score=57.77 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=33.5
Q ss_pred hhHhhhCCCC--CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 26 IIDRCLGGGI--PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 26 ~LD~~L~GGl--~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.++.+|++.. ..+.++.|+|||||||||++..++... + + ..++|+++
T Consensus 19 ~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~--~---~----~~~~Is~D 67 (287)
T 1gvn_B 19 NLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET--Q---G----NVIVIDND 67 (287)
T ss_dssp HHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHT--T---T----CCEEECTH
T ss_pred HHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHh--C---C----CeEEEech
Confidence 3455554433 357899999999999999999987753 1 1 35778763
No 239
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.77 E-value=0.00091 Score=60.65 Aligned_cols=29 Identities=24% Similarity=0.126 Sum_probs=26.6
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
-++++|+++.|+||||+|||||+..++..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999999988865
No 240
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.75 E-value=0.00066 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=22.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.++.|+|++||||||++..++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999998764
No 241
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.74 E-value=0.0012 Score=54.52 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=31.6
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
+++|.++.|.|++||||||++..++.... ...|. .+++++.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~---~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRV---HAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCC---CEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCC---cEEEECC
Confidence 67899999999999999999999887641 11232 4788873
No 242
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.74 E-value=0.00098 Score=55.24 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=26.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
++.|.|||||||+|.|..|+... .+.+|++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----------g~~~istGd 33 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----------GFVHISTGD 33 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----------CCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----------CCeEEcHHH
Confidence 67899999999999999998875 467888653
No 243
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.74 E-value=0.00056 Score=58.50 Aligned_cols=39 Identities=23% Similarity=0.165 Sum_probs=31.5
Q ss_pred CChhhHhhhCCCCCC---CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 23 GCPIIDRCLGGGIPC---NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 23 G~~~LD~~L~GGl~~---G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+...|+.+ .--+.+ |.++.|+|++||||||++..++...
T Consensus 31 ~~~~l~~~-~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 31 EQQILKKK-AEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -CHHHHHH-HHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cchhhhhh-hhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45567766 346777 9999999999999999999888764
No 244
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.73 E-value=0.01 Score=52.57 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=33.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.++.+.|..|+||||++.++|...+ ..|. +|+.||++-
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA---~~G~---rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMA---RSGK---KTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH---HTTC---CEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHH---HCCC---cEEEEeCCC
Confidence 6888899999999999999999876 5565 899999885
No 245
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.72 E-value=0.00069 Score=54.20 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=25.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
++.|+|+|||||||++..++... ...|+|++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-----------~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-----------DLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-----------CCCEEccc
Confidence 58899999999999999998764 34677754
No 246
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.70 E-value=0.001 Score=53.72 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.|.||+|||||||+..++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998875
No 247
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.69 E-value=0.0011 Score=53.45 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=22.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.++.|.|+|||||||++..++...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998764
No 248
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.69 E-value=0.00093 Score=54.58 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+++.|+||+|+||||++..++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 6789999999999999999988875
No 249
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.69 E-value=0.0012 Score=56.56 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=28.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.+.++.|+|+|||||||++..++.... ..|- .+++++.+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~---~~g~---~~i~~~~D 41 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS---KNNI---DVIVLGSD 41 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC---CEEEECTH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH---hCCC---EEEEECch
Confidence 467899999999999999999987642 2232 45556643
No 250
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.68 E-value=0.00092 Score=61.80 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=37.4
Q ss_pred hHhhhCCC---C--CCC--cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 27 IDRCLGGG---I--PCN--SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 27 LD~~L~GG---l--~~G--~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
|..++++. + ..+ .++.|+|++|+||||++..++..+. ..|. +|++++++
T Consensus 81 l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~---~~G~---kVllv~~D 136 (432)
T 2v3c_C 81 LVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ---KRGL---KPALIAAD 136 (432)
T ss_dssp HHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH---HHHC---CEEEECCS
T ss_pred HHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC---eEEEEecc
Confidence 44556554 3 223 5999999999999999999998875 4454 89999876
No 251
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.67 E-value=0.0017 Score=52.58 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++.++.|.|++||||||++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998754
No 252
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.66 E-value=0.0011 Score=56.22 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.++.|+||+||||||++..++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999988543
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.66 E-value=0.0011 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHH
Q 022155 39 SITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~ 60 (302)
.++.|+|+|||||||++..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999998876
No 254
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.65 E-value=0.0016 Score=52.28 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=23.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+.++.|+|+|||||||++..++...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999888764
No 255
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.64 E-value=0.0021 Score=51.73 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=26.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
++.|.|+|||||||++..++.... ..|- .+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~---~~g~---~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD---NQGI---NNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH---TTTC---CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---hcCc---eEEEEE
Confidence 689999999999999999988752 2232 477775
No 256
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.64 E-value=0.015 Score=47.36 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=31.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHH
Q 022155 41 TELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQ 91 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~ 91 (302)
+.|+||+|+|||+++..++....- .+ .....+.++.........+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFG---EN-WRDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG---GG-GGGGEEEEETTCTTCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc---cc-cccceEEeccccccChHHHHH
Confidence 899999999999999999876521 11 112467777665444444443
No 257
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.62 E-value=0.031 Score=48.98 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=33.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHH
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLS 93 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~ 93 (302)
.++.+.||||+|||+++..++... + ..+++++... .....++...
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l------~---~~~~~i~~~~-~~~~~i~~~~ 93 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV------N---ADMMFVNGSD-CKIDFVRGPL 93 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT------T---EEEEEEETTT-CCHHHHHTHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh------C---CCEEEEcccc-cCHHHHHHHH
Confidence 578999999999999999998764 1 2788999764 3355554433
No 258
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.62 E-value=0.00078 Score=60.02 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
-+++|+++.|+||+|||||||+..++... ++. . +.+.++..
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~--~~~-~----g~i~i~~~ 207 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFI--PKE-E----RIISIEDT 207 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGS--CTT-S----CEEEEESS
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCC--cCC-C----cEEEECCe
Confidence 35689999999999999999998887664 322 2 35667644
No 259
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.61 E-value=0.0016 Score=52.50 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=22.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.++.|.|+|||||||++..++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999887754
No 260
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.61 E-value=0.0015 Score=54.43 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=22.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.++.|.|++||||||++..++...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999888764
No 261
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.60 E-value=0.012 Score=52.69 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=31.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
...++.|+|+||+|||||+.+++.... ..|. +|..++.+-
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~---~~g~---kV~vi~~Dp 117 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI---ERGH---RVAVLAVDP 117 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH---TTTC---CEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH---hCCC---ceEEEecCC
Confidence 456899999999999999999998864 3454 788888663
No 262
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.60 E-value=0.0012 Score=63.16 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=33.9
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccC-CCcCCCCCCeEEEEeCCCC
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQL-PSSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l-~~~~gg~~~~vlyid~e~~ 83 (302)
|...|...-....++.|+|++|+|||+|+.+++..... ..... ..++|++....
T Consensus 136 L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~---~~v~wv~~~~~ 190 (591)
T 1z6t_A 136 IQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFP---GGVHWVSVGKQ 190 (591)
T ss_dssp HHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCT---TCEEEEEEESC
T ss_pred HHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCC---CceEEEECCCC
Confidence 44445322234679999999999999999988643210 00111 15889886543
No 263
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.59 E-value=0.001 Score=59.72 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=27.2
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|..++..+.|+||||+|||+++..++...
T Consensus 64 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp HTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3566678899999999999999999998876
No 264
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=96.59 E-value=0.044 Score=43.12 Aligned_cols=140 Identities=8% Similarity=-0.077 Sum_probs=70.2
Q ss_pred cCCCCCCccccCChhhHhhh-CCCCCCCcEEEEEe-CCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH
Q 022155 12 DNPLTTEKCTVGCPIIDRCL-GGGIPCNSITELVA-ESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL 89 (302)
Q Consensus 12 ~~~~~~~~i~tG~~~LD~~L-~GGl~~G~i~ei~G-~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl 89 (302)
+-.-....+|.|.+.+|.-+ +||++.|.++||.. .+|.|=..|+.-++....- ...++ .++||..........+
T Consensus 17 ~~~~~~~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~-~~~~r---~vlwI~Pp~~l~~~~L 92 (161)
T 1oft_A 17 EAFWASNGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSE-EQDAR---WLTLIAPPASLTHEWL 92 (161)
T ss_dssp --------------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHT-CSSSS---EEEEESCCTTSCHHHH
T ss_pred HHHhhCccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcc-cccCc---cEEEECCCCCCCHHHH
Confidence 55566888899999999988 57899999999974 5777766666655555320 01233 8999998776666666
Q ss_pred HHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhhhhhhccCCChhhHHHHHHH
Q 022155 90 HQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAALFRSDFDNTMDDLKKRSFL 169 (302)
Q Consensus 90 ~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~~~~~~~~~~~~~~~~r~~~ 169 (302)
.+.+ -..+++.+.+..+..+.... +++.+.. .....||.. +.. + +..
T Consensus 93 ~~~G---------l~~~rll~v~~~~~~daLwa---~EqALrs-----G~~~aVl~W-l~~-----l-----~~~----- 139 (161)
T 1oft_A 93 RRAG---------LNRERILLLQAKDNAAALAL---SCEALRL-----GRSHTVVSW-LEP-----L-----SRA----- 139 (161)
T ss_dssp HHTT---------CCGGGEEEECCSSTTHHHHH---HHHHHHT-----TCEEEEEEC-CSS-----C-----CHH-----
T ss_pred HHcC---------CCHHHEEEEECCChHHHHHH---HHHHHhc-----CCccEEEEC-CCc-----C-----ChH-----
Confidence 5544 34578988888776554433 3455543 566777654 221 1 111
Q ss_pred HHHHHHHHHHHHHHcCcEEEEE
Q 022155 170 FFKISGMLKAMAVGFGLAVLVT 191 (302)
Q Consensus 170 l~~l~~~L~~la~~~~~~viv~ 191 (302)
-.++|+--|++-++..++.
T Consensus 140 ---~~RRLqlAAe~g~~~~fll 158 (161)
T 1oft_A 140 ---ARKQLSRAAQLGQAQSLNI 158 (161)
T ss_dssp ---HHHHHHHHHHHTTCEEEEE
T ss_pred ---HHHHHHHHHHhCCCeEEEe
Confidence 1366666677767766654
No 265
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.59 E-value=0.0016 Score=54.12 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.++.|.|+|||||||++..++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998764
No 266
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.58 E-value=0.00076 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++.|+|+|||||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998764
No 267
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.57 E-value=0.017 Score=51.72 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=35.1
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
-+...++.+.|..|+||||++.++|...+ ..|. +|+.||++-
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA---~~G~---rVLlvD~D~ 64 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLA---EKGL---KVVIVSTDP 64 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHH---HSSC---CEEEEECCT
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHH---HCCC---eEEEEeCCC
Confidence 34566778889999999999999999876 5565 899999885
No 268
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.57 E-value=0.0069 Score=60.82 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..-+.|+||||+|||+++..++...
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999998875
No 269
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.55 E-value=0.0017 Score=54.29 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=22.5
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
...+.++.|.|++||||||++..++...
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999988764
No 270
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.52 E-value=0.002 Score=55.69 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+++| +.|+||||+|||+|+..++...
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 34556 8999999999999999988764
No 271
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.51 E-value=0.0016 Score=53.31 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+|.++.|.|++||||||++..++...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998875
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.51 E-value=0.0014 Score=51.72 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.5
Q ss_pred cEEEEEeCCCCcHHHHHHHH
Q 022155 39 SITELVAESGSGKTQFCLQL 58 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~l 58 (302)
.++.|+|+|||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999888
No 273
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.50 E-value=0.0022 Score=52.08 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.+.++.|.|++||||||++..++...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999998764
No 274
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0015 Score=60.86 Aligned_cols=29 Identities=24% Similarity=0.119 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+++|+++.|.||+|||||||+..++...
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 47899999999999999999998887764
No 275
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.50 E-value=0.0021 Score=51.56 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.3
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.+| ++.|+||+||||||++..++...
T Consensus 23 ~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 23 PFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp ECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 34566 99999999999999998887653
No 276
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.46 E-value=0.0028 Score=56.10 Aligned_cols=39 Identities=13% Similarity=0.009 Sum_probs=28.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
++.|.||+|||||||+..++..... ...++ .+.+++.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~---~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR-WPDHP---NVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT-STTCC---CEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc-cCCCC---eEEEEeecc
Confidence 9999999999999999988776421 01222 677777665
No 277
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.45 E-value=0.0012 Score=62.79 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=32.9
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
-+.+|+++.|+|++||||||++..++.... + ..|+ .+.|+|++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-~-~~G~---~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-E-MGGR---CVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-T-TCSS---CEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-c-cCCc---eEEEECCc
Confidence 356899999999999999999999988752 1 2222 46678865
No 278
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.45 E-value=0.003 Score=54.27 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=29.0
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|...|.|..++...+.|+||||+|||.|+..+|..+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 444555555777789999999999999999998764
No 279
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.41 E-value=0.0025 Score=55.63 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=30.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
...+.|+||||+|||+++..++.... ..++ .++++++..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~---~~~~---~~~~~~~~~ 85 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF---DTEE---AMIRIDMTE 85 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH---SCGG---GEEEEEGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc---CCCc---ceEEeeccc
Confidence 35899999999999999999988753 2222 688888764
No 280
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.38 E-value=0.0025 Score=52.30 Aligned_cols=28 Identities=14% Similarity=-0.043 Sum_probs=24.6
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
...|.++.|.|++||||||++..++...
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999998764
No 281
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.37 E-value=0.0026 Score=52.32 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=24.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+|.++.|.|++||||||++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998764
No 282
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.35 E-value=0.0027 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
+|.++.|.|++||||||++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999988765
No 283
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.35 E-value=0.0027 Score=53.86 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++.++.|.|+|||||||+|..++...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999998654
No 284
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.35 E-value=0.0028 Score=51.83 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.++.|.|+|||||||++..++...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999988764
No 285
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.34 E-value=0.0033 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..++.|.|++||||||++..++...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999888653
No 286
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.34 E-value=0.0032 Score=48.79 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=22.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+.-+.|+||||+|||++|..++...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 345568999999999999998887654
No 287
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.33 E-value=0.0015 Score=54.83 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=23.4
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHH
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~ 60 (302)
..++|.++.|.|++||||||++..++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999976654
No 288
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.32 E-value=0.0016 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+++.|.|++||||||++..++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999888764
No 289
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.30 E-value=0.0046 Score=49.48 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=27.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.++.|+|++||||||++..++.... ..|- +|..|..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~---~~g~---~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV---REGW---RVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH---HTTC---CEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH---hcCC---eeeEEEeC
Confidence 4789999999999999999988753 3343 55555533
No 290
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.29 E-value=0.0026 Score=55.59 Aligned_cols=29 Identities=24% Similarity=0.309 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.-..+.++.|+|++|||||||+..++...
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999999888775
No 291
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.28 E-value=0.0019 Score=51.70 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=18.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.++.|.|++||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999987654
No 292
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.27 E-value=0.0036 Score=50.36 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..++.|.|++||||||++..++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999887753
No 293
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.27 E-value=0.0023 Score=60.35 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=29.5
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
++.|.++.|+||+||||||++..++... +.. . +++.|..
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i--~~~-~----giitied 295 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFI--PPD-A----KVVSIED 295 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGS--CTT-C----CEEEEES
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhC--CCC-C----CEEEEcC
Confidence 4689999999999999999998876653 322 2 4666654
No 294
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.25 E-value=0.0027 Score=53.56 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=22.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..++.|.||+||||||++..++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999888764
No 295
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.25 E-value=0.0038 Score=54.62 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=34.9
Q ss_pred CCccccCChhhHhh---hCC--CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 17 TEKCTVGCPIIDRC---LGG--GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 17 ~~~i~tG~~~LD~~---L~G--Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
...||||.+....+ |.. .-..+.++.|+|..|+||||++.++|...+ ..|. +|+.||.+-
T Consensus 15 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vI~v~~KGGvGKTT~a~nLA~~La---~~G~---~VlliD~D~ 79 (307)
T 3end_A 15 DLTIPTGADGEGSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGK---RVLQIGCDP 79 (307)
T ss_dssp -------------------------CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTC---CEEEEEESS
T ss_pred cccCCcCccccchhhhhhccccccCCceEEEEECCCCccHHHHHHHHHHHHH---HCCC---eEEEEeCCC
Confidence 34566666654433 211 234678999999999999999999999876 5565 899999884
No 296
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.24 E-value=0.0052 Score=51.65 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
....|.++.|.|++||||||++..++...
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999888775
No 297
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.21 E-value=0.0034 Score=52.09 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++..+.|.|+|||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999888764
No 298
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.20 E-value=0.0057 Score=49.15 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..-.++.|+|++|||||||+..++...
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 345689999999999999999998764
No 299
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.19 E-value=0.0033 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++.|.|++||||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999888764
No 300
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.19 E-value=0.0021 Score=54.84 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=30.1
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
...+.++.|+|+|||||||++..++.... . .+++++++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~------~---~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ------G---NIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT------T---CCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC------C---CcEEEecH
Confidence 45578999999999999999999987641 1 46778866
No 301
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.18 E-value=0.012 Score=53.93 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=28.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+...++.|+|+|||||||++..++... ...+|+.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~-----------~~~~i~~D~ 291 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----------GYVHVNRDT 291 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG-----------TCEECCGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc-----------CcEEEccch
Confidence 356899999999999999998886542 356777654
No 302
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.17 E-value=0.0048 Score=54.95 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++.|+||+|||||+|+..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999998764
No 303
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.17 E-value=0.0024 Score=58.71 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=28.2
Q ss_pred hHhhhCCCCCCCcE--EEEEeCCCCcHHHHHHHHHHH
Q 022155 27 IDRCLGGGIPCNSI--TELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 27 LD~~L~GGl~~G~i--~ei~G~~GsGKT~l~l~la~~ 61 (302)
|+.+ +--+++|.+ +.|+||+|+|||||+..++..
T Consensus 30 L~~v-sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLV-NKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHH-HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCC-ceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 6655 446899999 999999999999999888765
No 304
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.16 E-value=0.0029 Score=51.90 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~ 60 (302)
++.|.|++||||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988854
No 305
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.16 E-value=0.0043 Score=55.20 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+.++.|+||+|||||+|+..+|...
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356799999999999999999998764
No 306
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.15 E-value=0.0052 Score=54.87 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=33.6
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
...+.++.|+|++|+||||++..++.... ..|+ ++..++.+-
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~---~v~v~~~d~ 94 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGL---KVAVIAVDP 94 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTC---CEEEEEECC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCC---eEEEEeecC
Confidence 56789999999999999999999988763 3454 677777553
No 307
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.14 E-value=0.004 Score=52.24 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+..+.|.|++||||||++..++...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 308
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.13 E-value=0.0029 Score=57.00 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=27.8
Q ss_pred hCCCCCC--CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 31 LGGGIPC--NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 31 L~GGl~~--G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.--+.+ |+.+.|+|++|||||||+..++...
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445677 9999999999999999999998875
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.12 E-value=0.0036 Score=50.92 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.|.|++||||||++..++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68899999999999999998764
No 310
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.12 E-value=0.0052 Score=54.38 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++.|+||+|||||+++..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999998764
No 311
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.11 E-value=0.0035 Score=52.09 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.++.|.|+|||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 312
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.10 E-value=0.0045 Score=52.06 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=23.8
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-++|.++.|.|++||||||++..++...
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999998887653
No 313
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.09 E-value=0.0037 Score=51.09 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~ 60 (302)
++.|+|++||||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999988876
No 314
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.09 E-value=0.0075 Score=54.77 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=30.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
..+.-+.|+|++|+|||+++..++.... ..|+ .++++|-+
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~---~~~~~D~~ 72 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREY---MQGS---RVIIIDPE 72 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHH---TTTC---CEEEEESS
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHH---HCCC---EEEEEeCC
Confidence 3566789999999999999999888764 3344 56666644
No 315
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.06 E-value=0.0062 Score=52.05 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=31.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
++.|.|..|+||||++.++|...+ ..|. +|+.||.+-
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la---~~G~---~VlliD~D~ 39 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLH---AMGK---TIMVVGCDP 39 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH---TTTC---CEEEEEECT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHH---HCCC---cEEEEcCCC
Confidence 567789999999999999999876 4565 899999884
No 316
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.06 E-value=0.0034 Score=55.10 Aligned_cols=32 Identities=31% Similarity=0.274 Sum_probs=26.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHH
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLT 59 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la 59 (302)
++|.++ -+..|+++.|.||||+|||||+..++
T Consensus 155 gi~~L~--~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELV--DYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHH--HHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHH--hhccCcEEEEECCCCCCHHHHHHHHH
Confidence 355544 24568999999999999999999888
No 317
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.05 E-value=0.0045 Score=54.01 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=29.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCC-CCCeEEEEeCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGG-LSASSLYLHTE 81 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg-~~~~vlyid~e 81 (302)
+.+.-+.|+||||+|||+++..++..+. ..+. ....+++++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~---~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH---RLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH---HTTSSSSCCEEEECGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCcCCCcEEEEcHH
Confidence 3455799999999999999998887753 1111 01256777644
No 318
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.05 E-value=0.0063 Score=48.98 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998764
No 319
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.05 E-value=0.0026 Score=56.62 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.9
Q ss_pred CCCcE--EEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSI--TELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i--~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|++ +.|+||||+|||+++..++...
T Consensus 42 ~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 42 DEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34444 9999999999999999998875
No 320
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.05 E-value=0.0064 Score=51.88 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.+.-+.|+||+|+|||++|..++.... ..+. ..+++++..
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~---~~~~v~~~~ 67 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS---RWQG---PFISLNCAA 67 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST---TTTS---CEEEEEGGG
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC---ccCC---CeEEEecCC
Confidence 346789999999999999988876542 2222 688998764
No 321
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.05 E-value=0.038 Score=52.53 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=31.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
...-+.|+|.+|||||+++..++..++...... ..+++.||...
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~--ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS--EARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT--TEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc--ceEEEEeCCCh
Confidence 455789999999999999999888764321111 23667788664
No 322
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.02 E-value=0.0058 Score=53.93 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=36.0
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.+..-+++.|+|.-|+||||++.+++...+ ..|. +|+.||.+-
T Consensus 44 ~i~~aKVIAIaGKGGVGKTTtavNLA~aLA---~~Gk---kVllID~Dp 86 (314)
T 3fwy_A 44 KITGAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGK---RVLQIGCDP 86 (314)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTC---CEEEEEESS
T ss_pred CCCCceEEEEECCCccCHHHHHHHHHHHHH---HCCC---eEEEEecCC
Confidence 456678999999999999999999999986 6676 999999883
No 323
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.01 E-value=0.0046 Score=55.56 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..|+++.|+|+||+|||||+..|+...
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccc
Confidence 368999999999999999998887643
No 324
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.00 E-value=0.0025 Score=51.09 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=26.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+++.|+|++|||||||+..++.... ..|. ....+.++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g~-~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ERGL-RVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HTTC-CEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hcCC-ceEEEEEcCc
Confidence 4789999999999999999988763 2221 1246676654
No 325
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.97 E-value=0.022 Score=57.96 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=35.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL 89 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl 89 (302)
...++.|+|++|.||||||.+++....+..... ..++|++....++...+
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd---~gV~WVsVs~~~d~~~I 198 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD---FKIFWLNLKNCNSPETV 198 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHS---SCEEEEECCCSSSHHHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCC---CcEEEEEeCCCCCHHHH
Confidence 357999999999999999998875321111112 25899998777666443
No 326
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=95.95 E-value=0.012 Score=51.09 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=30.6
Q ss_pred cEEEEE-eCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 39 SITELV-AESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 39 ~i~ei~-G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.++.|+ +..|+||||++.++|..++ ..|. +|+.||.+-
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La---~~G~---~VlliD~D~ 43 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALL---YGGA---KVAVIDLDL 43 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHH---HTTC---CEEEEECCT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHH---HCCC---cEEEEECCC
Confidence 355554 6789999999999999876 4565 899999886
No 327
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.95 E-value=0.0046 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887764
No 328
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.94 E-value=0.0037 Score=51.28 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|..+.|.||+|+|||++++.++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 47789999999999999999997653
No 329
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.94 E-value=0.0044 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.|+||+|+|||||+..+....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999887663
No 330
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.91 E-value=0.0041 Score=58.11 Aligned_cols=35 Identities=14% Similarity=0.018 Sum_probs=28.1
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ .--+++ +++.|.||+|||||||+..++...
T Consensus 19 ~l~~v-sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 19 GFFAR-TFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp TEEEE-EEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccce-EEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 34433 335788 999999999999999999888764
No 331
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.91 E-value=0.0055 Score=50.67 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+.|+||+|+|||+++..++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998775
No 332
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.89 E-value=0.0053 Score=50.65 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887654
No 333
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.89 E-value=0.0044 Score=50.63 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=26.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
..++.|+|++||||||++..++... ++.+||++
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l-----------g~~vid~D 44 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY-----------GAHVVNVD 44 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-----------CCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-----------CCEEEECc
Confidence 4689999999999999998887652 25677765
No 334
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.89 E-value=0.016 Score=59.94 Aligned_cols=100 Identities=11% Similarity=0.187 Sum_probs=54.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCH---HHHHHHHHHhCCCCCCCCCCcEEEEe
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPM---RRLHQLSHTFRPSNDHNPCDYIFVQS 112 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~---~rl~~i~~~~~~~~~~~~l~~i~~~~ 112 (302)
....++.|+|++|.||||||.+++..... ........++|++....... ..+..+...+...... ... .
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~----~ 216 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSL--LEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESF--SQR----L 216 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCCHHH--HTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTT--CSS----C
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcChhH--HHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhccc--ccC----C
Confidence 34578999999999999999888654210 01111226889997654332 2234444443321110 000 1
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCeeEEEEechhh
Q 022155 113 VHSVDQLLDIMPKIESFIKNSSNSRLPIRLIVIDSIAA 150 (302)
Q Consensus 113 ~~~~~~l~~~l~~l~~~l~~~~~~~~~~~lvVIDsi~~ 150 (302)
..+.++ +...+...+.. ..+--|||+|++..
T Consensus 217 ~~~~~~---~~~~l~~~l~~----~~~~~LlvlDd~~~ 247 (1249)
T 3sfz_A 217 PLNIEE---AKDRLRVLMLR----KHPRSLLILDDVWD 247 (1249)
T ss_dssp CSSHHH---HHHHHHHHTSS----SSCSCEEEEESCCC
T ss_pred CCCHHH---HHHHHHHHHhc----cCCCEEEEEecCCC
Confidence 123333 34445555543 11237999999754
No 335
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.88 E-value=0.0024 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.-+.|+||||+|||++|..++...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 337899999999999999998875
No 336
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.87 E-value=0.0034 Score=51.29 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.|.|++||||||++..++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999888764
No 337
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.84 E-value=0.0063 Score=49.42 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHH
Q 022155 38 NSITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~ 60 (302)
..++.|+|++||||||++..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999988865
No 338
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.82 E-value=0.0017 Score=57.19 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=23.4
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.+|+++.|+|+||+|||||+..++...
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 5579999999999999999998886553
No 339
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.81 E-value=0.0029 Score=52.05 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.|.|++||||||++..++...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998775
No 340
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.81 E-value=0.008 Score=52.07 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=32.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~ 83 (302)
.++.|.|..|+||||++.++|...+ ..|. +|+.||.+-.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La---~~G~---rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALA---EMGK---KVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH---HTTC---CEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHH---HCCC---eEEEEecCCC
Confidence 3567789999999999999999876 4565 8999998853
No 341
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.80 E-value=0.0064 Score=56.48 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.5
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|..++.-+.|+||||+|||++|..++...
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 456666678999999999999999998875
No 342
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.78 E-value=0.0054 Score=58.33 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=24.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+|.++.|+||||+|||+++..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999998764
No 343
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.77 E-value=0.0067 Score=50.16 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~ 60 (302)
.+.++.|.|++||||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988865
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.76 E-value=0.0068 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.101 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999887754
No 345
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.76 E-value=0.0087 Score=52.60 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=30.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+.-+.|+||+|+|||+|+..++..+.. ..|. .|+|++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~--~~g~---~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSE--KKGV---STTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHH--HSCC---CEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH--hcCC---cEEEEEHH
Confidence 678999999999999999988876530 1233 78888753
No 346
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.74 E-value=0.0065 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988764
No 347
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.74 E-value=0.012 Score=50.69 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=34.4
Q ss_pred CCCcEEEEEeC-CCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC
Q 022155 36 PCNSITELVAE-SGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 36 ~~G~i~ei~G~-~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~ 83 (302)
....++.|+++ +|+||||++.++|...+ ..|. +|++||.+..
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA---~~G~---rVLLID~D~~ 122 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYA---QAGY---KTLIVDGDMR 122 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHH---HTTC---CEEEEECCSS
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHH---hCCC---eEEEEeCCCC
Confidence 34678888876 89999999999999886 4565 8999998843
No 348
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.72 E-value=0.0079 Score=50.47 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=31.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC
Q 022155 41 TELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~ 83 (302)
+.|.|..|+||||++.++|...+ ..|. +|+.||.+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la---~~g~---~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA---SDYD---KIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT---TTCS---CEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHH---HCCC---eEEEEeCCCC
Confidence 45699999999999999999876 5565 8999998853
No 349
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.72 E-value=0.012 Score=51.48 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=33.9
Q ss_pred CCcEEEEEeC-CCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 37 CNSITELVAE-SGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 37 ~G~i~ei~G~-~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
...++.|+++ +|+||||++.++|..++ ..|. +|+.||.+.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA---~~G~---rVLLID~D~ 143 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIA---QSDQ---KVLFIDADL 143 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHH---HTTC---CEEEEECCT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHH---hCCC---cEEEEECCC
Confidence 4678888886 79999999999999876 4565 899999885
No 350
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.72 E-value=0.0065 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.|+||+|+|||||+..++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988875
No 351
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.71 E-value=0.011 Score=52.90 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=24.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.+.++.|+|+||+|||||+..++...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 447899999999999999999998765
No 352
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.69 E-value=0.01 Score=52.20 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.++.|+||+|||||+|+..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999998753
No 353
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.65 E-value=0.0033 Score=51.36 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=27.4
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHH
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~ 60 (302)
+.++. + .+.+|..+.|+|++|+|||||+..++.
T Consensus 16 ~~l~~-~--~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 16 PDIRH-L--PSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSGGG-S--SCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCHhH-C--CCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45665 3 578899999999999999999987764
No 354
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.64 E-value=0.27 Score=37.60 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999988654
No 355
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.61 E-value=0.59 Score=36.43 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47899999999999999998654
No 356
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.60 E-value=0.0042 Score=54.43 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=27.2
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+|.++ -+..|+++.|.||||+|||||+..++...
T Consensus 159 gv~~lf--~~l~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 159 GIEELK--EYLKGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp THHHHH--HHHSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CHHHHH--HHhcCCeEEEECCCCCcHHHHHHHhcccc
Confidence 355544 24468999999999999999998887653
No 357
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.58 E-value=0.016 Score=50.91 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..++.|+||+|||||+|+..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999998764
No 358
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.57 E-value=0.0058 Score=61.73 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=27.8
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHH
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~ 60 (302)
|+.+ +--+++|+++.|+||+|||||||+..++.
T Consensus 451 L~~v-sl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 451 LNKT-QLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred Eecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4443 34688999999999999999999998885
No 359
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.57 E-value=0.0043 Score=54.11 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=26.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
...++.|.|++||||||++..++.... ..+. .+.+|+++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg---~~~~---~~~vI~~D~ 43 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR---REGV---KAVSIEGDA 43 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH---HHTC---CEEEEEGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh---hcCC---CeeEeecch
Confidence 356899999999999999998887531 1121 477888775
No 360
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.57 E-value=0.008 Score=51.05 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=29.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCC--cCCCCCCeEEEEeCCC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPS--SHGGLSASSLYLHTEF 82 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~--~~gg~~~~vlyid~e~ 82 (302)
.++.|.|++||||||++..|+...-.+. ..+ ..+++++++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~---~~~~~i~~D~ 65 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQ---KQVVILSQDS 65 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGG---CSEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccC---CceEEEecCc
Confidence 5899999999999999998887542210 011 2577888775
No 361
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.57 E-value=0.0048 Score=60.24 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=25.2
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHH
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQL 58 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~l 58 (302)
|+.+ +--|++|+++.|+||+|||||||+..+
T Consensus 338 L~~v-sl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 338 LKNV-SVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp CCSE-EEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred cccc-eeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 4443 346889999999999999999998544
No 362
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.56 E-value=0.012 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHc
Q 022155 41 TELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+||||+|||+++..++...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998875
No 363
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.55 E-value=0.0078 Score=52.26 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=27.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
+.-+.|+||||+|||+++..++.... . .++++++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~------~---~~~~i~~~ 84 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN------A---PFIKVEAT 84 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT------C---CEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC------C---CEEEEcch
Confidence 45688999999999999999987641 1 57778765
No 364
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.55 E-value=0.018 Score=48.84 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=32.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.+..++.+.|.+|+||||++.+++.... .|. +++.+|.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~----~g~---~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE----DNY---KVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT----TTS---CEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH----CCC---eEEEEeCCC
Confidence 3457899999999999999999998753 233 788898764
No 365
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.54 E-value=0.0082 Score=53.89 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.-+.|+||||+|||++|..++...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999998764
No 366
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.53 E-value=0.0085 Score=49.89 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
++.|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999887754
No 367
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.50 E-value=0.0032 Score=63.57 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=28.9
Q ss_pred hHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 27 IDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 27 LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|+.+ +--+.+|+++.|.||+|||||||+..++...
T Consensus 689 L~dV-Sl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 689 ITDI-NFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEE-EEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred eecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4443 3458899999999999999999999887754
No 368
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.50 E-value=0.013 Score=51.12 Aligned_cols=46 Identities=17% Similarity=0.015 Sum_probs=29.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHH
Q 022155 41 TELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLH 90 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~ 90 (302)
+.|+||+|+|||+++..++....-+ ... ..+++++.........++
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~-~~~---~~~~~~~~~~~~~~~~i~ 90 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGR-SYA---DGVLELNASDDRGIDVVR 90 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGG-GHH---HHEEEECTTSCCSHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCC-ccc---CCEEEecCccccChHHHH
Confidence 8999999999999999998875210 001 146777655433333333
No 369
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.49 E-value=0.0051 Score=56.38 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~ 61 (302)
++.|+||+|+|||||+..++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 9999999999999999888764
No 370
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.45 E-value=0.015 Score=50.64 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHc
Q 022155 41 TELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+||+|+|||+++..++...
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999998874
No 371
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.44 E-value=0.02 Score=49.68 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=33.2
Q ss_pred CCcEEEEEeC-CCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC
Q 022155 37 CNSITELVAE-SGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 37 ~G~i~ei~G~-~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~ 83 (302)
...++.|+++ +|+||||++.++|..++ ..|. +|++||++..
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA---~~G~---rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVIS---QTNK---RVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHH---TTTC---CEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHH---hCCC---CEEEEeccCC
Confidence 4567777765 89999999999999886 4565 8999998854
No 372
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.44 E-value=0.0099 Score=49.02 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999888754
No 373
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.34 E-value=0.0092 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 022155 39 SITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.++.|.|+|||||||++..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998864
No 374
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.34 E-value=0.014 Score=51.23 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=33.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHH
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRL 89 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl 89 (302)
+...-+.|+||||+|||++|..++.... ..+. ..+++++.. ++...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~---~~~~---~~v~v~~~~-~~~~l~ 69 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSA---RSDR---PLVTLNCAA-LNESLL 69 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSS---CSSS---CCCEEECSS-CCHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCc---ccCC---CeEEEeCCC-CChHHH
Confidence 3456789999999999999998887642 2232 678888763 444333
No 375
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.32 E-value=0.012 Score=47.17 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.|.-+.|.|+||+||||+++.++..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3667999999999999999988764
No 376
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.30 E-value=0.013 Score=56.40 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=25.6
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+..|..+.|+||||+||||++..++...
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 35678999999999999999999998864
No 377
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.13 Score=44.99 Aligned_cols=57 Identities=11% Similarity=0.023 Sum_probs=39.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC-CCCHHHHHHHHHHhC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF-PFPMRRLHQLSHTFR 97 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~-~~~~~rl~~i~~~~~ 97 (302)
...+.|+||+|+|||+++..++..+... .. ....+++++.++ ....+.++++...+.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~-~~--~~~d~~~l~~~~~~~~id~ir~li~~~~ 75 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKF-PP--KASDVLEIDPEGENIGIDDIRTIKDFLN 75 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTS-CC--CTTTEEEECCSSSCBCHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchh-hc--cCCCEEEEcCCcCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998763211 00 112578888764 455666777766654
No 378
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.29 E-value=0.013 Score=48.08 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..++.|.|+||||||++|..++...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4589999999999999998876554
No 379
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.29 E-value=0.02 Score=47.47 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=23.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+|.++.|.|++||||||++..++...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999888765
No 380
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.28 E-value=0.018 Score=55.15 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
...++.+.|.+|+||||++.++|...+ ..|. +|++||++-
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA---~~G~---rVLlvd~D~ 46 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLA---EQGK---RVLLVSTDP 46 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHH---HTTC---CEEEEECCT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHH---HCCC---cEEEEECCC
Confidence 467899999999999999999999886 5565 899999884
No 381
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.28 E-value=0.021 Score=50.28 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=28.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.++.|+||+|+|||+|+.+++.... . .++|++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~------~---~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN------L---PYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT------C---CEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC------C---CEEEEEchh
Confidence 5999999999999999999987642 1 478998763
No 382
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.27 E-value=0.012 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHH
Q 022155 38 NSITELVAESGSGKTQFCLQLT 59 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la 59 (302)
..++.|+|++||||||++..++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999887
No 383
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.19 E-value=0.024 Score=49.52 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
....+.|+||+|+|||+++..++...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999998764
No 384
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.18 E-value=0.012 Score=52.92 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=27.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
....+.|+||||+|||++|..++... +. .+++++..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l------~~---~~~~~~~~ 106 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL------DI---PIAISDAT 106 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT------TC---CEEEEEGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh------CC---CEEEecch
Confidence 45568999999999999999998764 21 56777754
No 385
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.17 E-value=0.01 Score=48.90 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.++.|.|++||||||++..++...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999998887653
No 386
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.16 E-value=0.12 Score=45.63 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=37.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCC---------------CCCeEEEEeCC---CCCCHHHHHHHHHHhC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGG---------------LSASSLYLHTE---FPFPMRRLHQLSHTFR 97 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg---------------~~~~vlyid~e---~~~~~~rl~~i~~~~~ 97 (302)
...+.|+||+|+|||+++..++....-....++ ....+.+++.+ .....+.++++...+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN 101 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHh
Confidence 346999999999999999999987631111000 01235677765 2345566667666543
No 387
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.16 E-value=0.017 Score=50.13 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=33.6
Q ss_pred CCcEEEEEe---CCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC
Q 022155 37 CNSITELVA---ESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 37 ~G~i~ei~G---~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~ 83 (302)
.+.++.|++ ..|+||||++.++|...+ ..|. +|+.||.+-.
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la---~~G~---rVlliD~D~q 76 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTD---KLNL---KVLMIDKDLQ 76 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHH---HTTC---CEEEEEECTT
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHH---hCCC---eEEEEeCCCC
Confidence 466788876 899999999999998875 4565 8999998853
No 388
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.16 E-value=0.013 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 022155 39 SITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.++.|+||+|+|||+++..+...
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 49999999999999998777653
No 389
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.13 E-value=0.014 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.|+|++|+|||||+..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999988764
No 390
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.12 E-value=0.36 Score=38.54 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999988654
No 391
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.09 E-value=0.17 Score=40.16 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998763
No 392
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.09 E-value=0.0055 Score=47.29 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=19.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~ 60 (302)
.+.-+.|+||||+|||++|..++.
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCcEEEECCCCccHHHHHHHHHH
Confidence 345589999999999999976643
No 393
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.09 E-value=0.027 Score=47.07 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCcEEEEEe-CCCCcHHHHHHHHHHHccCCCcC-CCCCCeEEEEeCCCC
Q 022155 37 CNSITELVA-ESGSGKTQFCLQLTLSAQLPSSH-GGLSASSLYLHTEFP 83 (302)
Q Consensus 37 ~G~i~ei~G-~~GsGKT~l~l~la~~~~l~~~~-gg~~~~vlyid~e~~ 83 (302)
.+.++.|++ ..|+||||++.++|...+ .. |. +|++||.+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la---~~~g~---~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALS---QEPDI---HVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHT---TSTTC---CEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHH---hCcCC---CEEEEECCCC
Confidence 356666664 588999999999999875 44 65 9999998743
No 394
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.09 E-value=0.082 Score=51.76 Aligned_cols=51 Identities=25% Similarity=0.353 Sum_probs=35.8
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
+.--.++.-++..|+.+.|+||.|||||+.+...+..... ..|+ +++|+.-
T Consensus 33 ~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~--~~~~---~il~i~P 83 (715)
T 2va8_A 33 PPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLL--KNGG---KAIYVTP 83 (715)
T ss_dssp HHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHH--HSCS---EEEEECS
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHH--HCCC---eEEEEeC
Confidence 3334444445677999999999999999999776655422 2344 8898873
No 395
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.08 E-value=0.014 Score=51.56 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+.|+||||+|||+++..++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 458999999999999999998764
No 396
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.07 E-value=0.014 Score=52.17 Aligned_cols=28 Identities=32% Similarity=0.304 Sum_probs=23.9
Q ss_pred CCCCcE--EEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSI--TELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i--~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+..|+. +.|+|++|+||||++..++...
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 456666 9999999999999999888764
No 397
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.06 E-value=0.019 Score=51.75 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=33.1
Q ss_pred CCCcEEEEEe-CCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 36 PCNSITELVA-ESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 36 ~~G~i~ei~G-~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
..+.++.|++ ..|+||||++.++|...+ ..|. +|++||.+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La---~~g~---rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHA---NMGK---KVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHH---HHTC---CEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHH---hCCC---CEEEEECC
Confidence 3567788875 899999999999999876 4455 89999988
No 398
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=95.05 E-value=0.029 Score=50.61 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
.++.+.|..|+||||++.++|...+ ..|. +|+.||+
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la---~~g~---~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLA---SQGK---RVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHH---HTTC---CEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH---HCCC---CeEEEeC
Confidence 4678899999999999999998876 5565 8999998
No 399
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.03 E-value=0.017 Score=53.17 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=24.4
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+..|+++.|+||+|+|||+++..++...
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4568999999999999999998887654
No 400
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.03 E-value=0.014 Score=52.57 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=21.4
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
++.| ++.|+||+||||||+.-.++..
T Consensus 21 ~~~g-~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 4566 8999999999999998776644
No 401
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.98 E-value=0.5 Score=36.04 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 36899999999999999998654
No 402
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=94.98 E-value=0.025 Score=48.00 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=29.9
Q ss_pred EEEE-EeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 40 ITEL-VAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 40 i~ei-~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
++.| .+..|+||||++.++|..++ ..|. +|++||.+.
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la---~~g~---~VlliD~D~ 41 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALA---QLGH---DVTIVDADI 41 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHH---HTTC---CEEEEECCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHH---hCCC---cEEEEECCC
Confidence 4444 67789999999999999876 4565 899999875
No 403
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.95 E-value=0.023 Score=55.19 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=28.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
...+..|.||||+|||+.+.+++.... ..+. +|+...
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~---~~~~---~ILv~a 240 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQAV---KQGL---KVLCCA 240 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHH---HTTC---CEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH---hCCC---eEEEEc
Confidence 456999999999999999988887764 3443 555554
No 404
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.95 E-value=0.026 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.++.|+||+|||||+|+..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998764
No 405
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.93 E-value=0.015 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~ 61 (302)
-+.|+|++|+|||||+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 406
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.93 E-value=0.015 Score=52.30 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHH
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~ 60 (302)
-+.+| ++.|+||+|+|||+++..++.
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 35677 999999999999999988875
No 407
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.91 E-value=0.011 Score=52.13 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=22.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|.-+.|+||||+|||+++..++...
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5579999999999999999998754
No 408
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.91 E-value=0.033 Score=49.30 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=34.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~ 83 (302)
...++.+.|..|+||||++.++|...+ ..|. +|+.+|++-.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA---~~G~---rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMS---KVRS---SVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHH---TSSS---CEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHH---HCCC---eEEEEECCCC
Confidence 356788899999999999999999876 5565 8999998854
No 409
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.91 E-value=0.0072 Score=55.19 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=27.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|+.+ .--+.+| ++.|+||+|+|||||+..+....
T Consensus 50 ~l~~v-~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 50 TITQL-ELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp TEEEE-EEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeE-EEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 34443 3367899 99999999999999997776543
No 410
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.90 E-value=0.011 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 022155 39 SITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.++.|.|++||||||++..++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 58999999999999999998875
No 411
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.90 E-value=0.019 Score=48.80 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=32.3
Q ss_pred CCcEEEEE-eCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 37 CNSITELV-AESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 37 ~G~i~ei~-G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.+.++.|+ +..|+||||++.++|..++ ..|. +|++||.+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la---~~g~---~VlliD~D~ 45 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLA---RLGK---RVLLVDLDP 45 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHH---HTTC---CEEEEECCT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHH---HCCC---CEEEEECCC
Confidence 35677776 6779999999999999876 4565 899999884
No 412
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.88 E-value=0.47 Score=38.11 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=24.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
|.-+.+.+|.|+|||..++..+.........+ .+++|+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~---~~~lil~ 78 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYLIPLLERLDLKKDN---IQAMVIV 78 (206)
T ss_dssp TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCS---CCEEEEC
T ss_pred CCCEEEECCCCCchHHHHHHHHHHHhcccCCC---eeEEEEe
Confidence 45689999999999976554443332111122 2678877
No 413
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.86 E-value=0.018 Score=45.60 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
+|.-+.|+|++|+|||+|+..++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5677899999999999999988754
No 414
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.79 E-value=0.022 Score=47.88 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+|.++.|.|.+||||||++..++...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999988764
No 415
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.75 E-value=0.026 Score=47.00 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=30.2
Q ss_pred cEEEEE-eCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 39 SITELV-AESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 39 ~i~ei~-G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.++.|+ +..|+||||++.++|..++ ..|. +|++||.+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la---~~g~---~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALG---DRGR---KVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHH---HTTC---CEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHH---hcCC---eEEEEeCCC
Confidence 455554 5689999999999999876 4565 899999875
No 416
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.73 E-value=0.28 Score=39.45 Aligned_cols=42 Identities=24% Similarity=0.148 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
|.-+.+.+|+|+|||..+...+..........+...+++|+.
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~ 79 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLT 79 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEEC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEE
Confidence 456899999999999875554444322111011123678776
No 417
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.71 E-value=0.026 Score=48.06 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=32.0
Q ss_pred CcEEEE-EeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCC
Q 022155 38 NSITEL-VAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPF 84 (302)
Q Consensus 38 G~i~ei-~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~ 84 (302)
+.++.| .+..|+||||++.++|..++ ..|. +|++||.+-..
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la---~~G~---~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYA---RQGK---KVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHH---HTTC---CEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHH---HCCC---eEEEEeCCCCC
Confidence 455665 46778999999999999876 4565 89999988544
No 418
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.70 E-value=0.022 Score=54.58 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=40.3
Q ss_pred hhhHhhhCC-CCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 25 PIIDRCLGG-GIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 25 ~~LD~~L~G-Gl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
+.||.++.+ +-....++.+.|.+|+||||++.++|..++ ..|. +|+++|++-
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~---~~g~---~vllvD~Dp 365 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLA---DMGF---DVHLTTSDP 365 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHH---HTTC---CEEEEESCC
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHH---HCCC---cEEEEeCCC
Confidence 567777643 233456778899999999999999999876 5565 899999883
No 419
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.68 E-value=0.035 Score=46.78 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=23.7
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.--+|.++.|.|++||||||++..++...
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34468899999999999999999888765
No 420
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.66 E-value=0.017 Score=48.36 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=21.6
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
|-..+|.++.|.|++||||||++..++...
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445689999999999999999999888765
No 421
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.63 E-value=0.027 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+||||+|||+++..+|...
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998875
No 422
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.61 E-value=0.015 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.8
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHH
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~ 60 (302)
+.+| ++.|+||+|+|||+++..+..
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHH
Confidence 4566 999999999999999988764
No 423
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.52 E-value=0.021 Score=44.71 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.+.|+|++|+|||+|+..++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988753
No 424
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.51 E-value=0.026 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..+.|+||+|+|||+++..++...
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998775
No 425
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.48 E-value=0.032 Score=47.08 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=30.5
Q ss_pred cEEEE-EeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 39 SITEL-VAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 39 ~i~ei-~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.++.| .+..|+||||++.++|...+ ..|. +|++||.+-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la---~~g~---~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLA---QKGK---KTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHH---HTTC---CEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHH---hCCC---cEEEEECCC
Confidence 45566 45688999999999999876 5565 899999885
No 426
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.40 E-value=0.033 Score=46.30 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=24.2
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+|.++.|.|++||||||.+..++...
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999888765
No 427
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.38 E-value=0.024 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.|+||+|+|||+++..++...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999998875
No 428
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.37 E-value=0.012 Score=52.03 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+||||+|||+++..++...
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred eEEEECCCCccHHHHHHHHHHhC
Confidence 39999999999999999998764
No 429
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.35 E-value=0.04 Score=52.68 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=29.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
.+.++.|.|+||+|||+++..++..+. ..|. +|++...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~---~~g~---~Vl~~Ap 240 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAE---SLGL---EVGLCAP 240 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHH---HTTC---CEEEEES
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHH---hcCC---eEEEecC
Confidence 367999999999999999999887764 3443 6776653
No 430
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.34 E-value=0.26 Score=39.04 Aligned_cols=21 Identities=19% Similarity=-0.089 Sum_probs=17.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~ 60 (302)
-+.|+|++|+|||+|+..+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999954443
No 431
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.32 E-value=0.02 Score=45.72 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=18.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTL 60 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~ 60 (302)
-+.|+|++|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999988865
No 432
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.31 E-value=0.11 Score=50.74 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
.|+.+.+++|.|||||+.+...+.... ..++ +++|+.-
T Consensus 39 ~~~~~lv~apTGsGKT~~~~l~il~~~---~~~~---~~l~i~P 76 (702)
T 2p6r_A 39 SGKNLLLAMPTAAGKTLLAEMAMVREA---IKGG---KSLYVVP 76 (702)
T ss_dssp TCSCEEEECSSHHHHHHHHHHHHHHHH---HTTC---CEEEEES
T ss_pred CCCcEEEEcCCccHHHHHHHHHHHHHH---HhCC---cEEEEeC
Confidence 478899999999999999876665542 2244 8999883
No 433
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.30 E-value=0.035 Score=46.03 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=23.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+|.++.|.|++||||||.+..++...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998887765
No 434
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.30 E-value=0.036 Score=50.38 Aligned_cols=30 Identities=30% Similarity=0.245 Sum_probs=26.6
Q ss_pred CCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 32 GGGIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 32 ~GGl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
-|-+..|..+.|+|+||+|||||...++..
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 356788999999999999999999998873
No 435
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.30 E-value=0.04 Score=45.45 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=27.3
Q ss_pred EEEEEe-CCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 40 ITELVA-ESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 40 i~ei~G-~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
++.|++ .+|+||||++.++|...+ ..|. +|+++|
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la---~~G~---rVll~d 37 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAK---AAGY---RTAGYK 37 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHH---HTTC---CEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH---HCCC---CEEEEc
Confidence 455666 589999999999999876 5565 899987
No 436
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=94.28 E-value=0.039 Score=50.67 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
..-+.|+|++|||||+++..++.++. ..|. .++.+|..+
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~---~~g~---~viv~Dpkg 91 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGL---LRGD---RMVIVDPNG 91 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHH---HTTC---EEEEEEETT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHH---HCCC---cEEEEeCCC
Confidence 45789999999999999877777764 3454 777788664
No 437
>4eq6_A Chromosome segregation in meiosis protein 2; DNA binding protein; 1.80A {Saccharomyces cerevisiae} PDB: 4dt1_A
Probab=94.26 E-value=0.54 Score=37.82 Aligned_cols=127 Identities=14% Similarity=0.282 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCCCHHHHHHHHHHhCCCCCCCCCCcEEEEeCCCHHHHHHHHHHHHHH
Q 022155 50 GKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYIFVQSVHSVDQLLDIMPKIESF 129 (302)
Q Consensus 50 GKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~~~~rl~~i~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~ 129 (302)
-|+.+|.-++.... .......+.|||+..+||...+.++.-... .....+.+||.+..|-+..+|..++.++-+.
T Consensus 17 ~~~~laq~i~~~L~----~~~~~~qLyyIDAtNSFPi~qFq~lvP~~~-~~n~~IYEnIRI~tcLDL~EL~~iv~kiiQ~ 91 (214)
T 4eq6_A 17 TKNKLCQFIKQNLS----KEHVVTQLFFIDATSSFPLSQFQKLVPPTL-PENVRIYENIRINTCLDLEELSAITVKLLQI 91 (214)
T ss_dssp CHHHHHHHHHHHHT----CTTSEEEEEEEESSCCCCHHHHHHHSCTTS-GGGHHHHHTEEEEECCSHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhc----cCCCceEEEEEecCCCCcHHHHHHhcCCCc-ccchhhhhheeeeeeecHHHHHHHHHHHHHH
Confidence 37778866655432 111112578999999999887766542100 1112366899999999999998877766444
Q ss_pred HHh-----cc----CCCCCe-eEEEEechhhhhhhc-cCCChhhHHHH-HHHHHHHHHHHHHHHHHcC
Q 022155 130 IKN-----SS----NSRLPI-RLIVIDSIAALFRSD-FDNTMDDLKKR-SFLFFKISGMLKAMAVGFG 185 (302)
Q Consensus 130 l~~-----~~----~~~~~~-~lvVIDsi~~~~~~~-~~~~~~~~~~r-~~~l~~l~~~L~~la~~~~ 185 (302)
+.- .. ....++ -+|||-.+..+|+.. +... .++ ..+|++++-+|+-+|.+.+
T Consensus 92 is~~ki~rq~~~~~~~~~~~~ilviInGLeiMFRnTq~k~~----~e~sH~lLrD~lLRLRv~aN~~~ 155 (214)
T 4eq6_A 92 LSMNKINAQRGTEDAVTEPLKIILYINGLEVMFRNSQFKSS----PQRSHELLRDTLLKLRVMGNDEN 155 (214)
T ss_dssp HHHHHHHHC--------CCEEEEEEEECHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhhHHHHhhccCCCCCCCceEEEEEcCHHHHHhhhhcCCC----hHHHHHHHHHHHHHHHHHhcccC
Confidence 321 00 011222 488899999999753 2211 233 6678999999999998644
No 438
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.26 E-value=0.013 Score=59.10 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHH
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQLT 59 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~la 59 (302)
--|+.|+++.|+|++|||||||+..++
T Consensus 663 l~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 663 VSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 368999999999999999999998754
No 439
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.23 E-value=0.033 Score=45.76 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=28.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
-..+.|+|++|+|||||+..++.... .. . ++..++.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~---~~-~---~~~~i~~d~ 67 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG---NE-V---KIGAMLGDV 67 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT---TT-S---CEEEEECSC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc---cC-C---eEEEEecCC
Confidence 34799999999999999999988742 11 1 566666553
No 440
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.19 E-value=0.095 Score=51.39 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=34.6
Q ss_pred HhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCC
Q 022155 28 DRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPF 84 (302)
Q Consensus 28 D~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~ 84 (302)
..++.-++..|+.+.++||.|||||+.+...+..... ..|+ +++|+.-...+
T Consensus 29 ~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~--~~~~---~~l~i~P~raL 80 (720)
T 2zj8_A 29 AEALKSGILEGKNALISIPTASGKTLIAEIAMVHRIL--TQGG---KAVYIVPLKAL 80 (720)
T ss_dssp HHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHH--HHCS---EEEEECSSGGG
T ss_pred HHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHH--hCCC---EEEEEcCcHHH
Confidence 3344434566899999999999999988555543321 1244 89998854333
No 441
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.17 E-value=0.032 Score=46.78 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-..|.|+|||||||+|..++...
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999988765
No 442
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.14 E-value=0.028 Score=43.53 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999988753
No 443
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.12 E-value=0.032 Score=45.73 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 022155 39 SITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.++.|+||+|+|||+++-.+...
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 59999999999999998776544
No 444
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.11 E-value=0.03 Score=43.12 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~ 61 (302)
-+.|+|++|+|||+|+..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999998764
No 445
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.10 E-value=0.035 Score=45.74 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-..+.|+|.+|+|||||+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998875
No 446
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.04 E-value=0.039 Score=46.10 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=24.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+|.++.|.|++||||||++..++...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999998888765
No 447
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.03 E-value=0.022 Score=53.50 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=23.6
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 35 IPCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 35 l~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+..|.-+.|+||||+|||++|..++...
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 4456789999999999999999887654
No 448
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.02 E-value=0.062 Score=44.17 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=26.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
|.++.|-|..||||||.+..++... ..|. +|++..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L----~~~~---~v~~~~ 36 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL----VKDY---DVIMTR 36 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH----TTTS---CEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH----HCCC---CEEEee
Confidence 5789999999999999998887765 2343 566554
No 449
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.01 E-value=0.03 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.+.|+|++|+|||+|+..++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999864
No 450
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.00 E-value=0.035 Score=42.69 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHc
Q 022155 41 TELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.++|++|+|||+|+..++...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998654
No 451
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.99 E-value=0.36 Score=39.44 Aligned_cols=41 Identities=24% Similarity=0.122 Sum_probs=25.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
.|.-+.+.+|.|+|||......+.........+ .+++++.-
T Consensus 50 ~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~---~~~lil~P 90 (224)
T 1qde_A 50 EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKA---PQALMLAP 90 (224)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCS---CCEEEECS
T ss_pred cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCC---ceEEEEEC
Confidence 345689999999999977443333332211122 36788763
No 452
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.97 E-value=0.053 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.+.|+||||+|||++|..++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998875
No 453
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=93.97 E-value=0.081 Score=47.35 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=38.2
Q ss_pred hhhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCC
Q 022155 25 PIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFP 83 (302)
Q Consensus 25 ~~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~ 83 (302)
+.|+.++.. +.-.++...|..|+||||++.++|...+.. ..|. +|+.||++-.
T Consensus 7 ~~l~~l~~~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~-~~G~---rVLLvD~D~~ 59 (354)
T 2woj_A 7 PNLHSLITS--TTHKWIFVGGKGGVGKTTSSCSIAIQMALS-QPNK---QFLLISTDPA 59 (354)
T ss_dssp SSCHHHHTC--SSCCEEEEEESTTSSHHHHHHHHHHHHHHH-CTTS---CEEEEECCSS
T ss_pred ccHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCC---eEEEEECCCC
Confidence 346666642 234678888999999999999999886400 1344 8999999854
No 454
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=93.91 E-value=0.012 Score=59.16 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.9
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHH
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLT 59 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la 59 (302)
-|+.|+++.|+|++|||||||+..++
T Consensus 646 ~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 646 KIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999999998754
No 455
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=93.90 E-value=0.018 Score=57.42 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=24.1
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHH-HH
Q 022155 33 GGIPCNSITELVAESGSGKTQFCLQ-LT 59 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l~-la 59 (302)
--|+.|+++.|+|++|||||||+.. ++
T Consensus 518 l~i~~Geiv~I~G~nGSGKSTLl~~~L~ 545 (842)
T 2vf7_A 518 VRFPLGVMTSVTGVSGSGKSTLVSQALV 545 (842)
T ss_dssp EEEESSSEEEEECCTTSSHHHHCCCCCH
T ss_pred EEEcCCCEEEEEcCCCcCHHHHHHHHHH
Confidence 4689999999999999999999975 44
No 456
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.89 E-value=0.032 Score=53.38 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.+.++.|.|.+||||||++..++.... ..|+ ..++++|++
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~---~~G~--~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN---QQGG--RSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH---HHCS--SCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc---ccCC--ceEEEECcH
Confidence 478999999999999999999987752 2221 157888854
No 457
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.87 E-value=0.018 Score=49.10 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=22.2
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.++.++.|.|++||||||++..++..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999877654
No 458
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.87 E-value=0.047 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
.|.++.|.|.+||||||++..++...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998764
No 459
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.86 E-value=0.043 Score=51.82 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
...++.++|.|||||||++..++...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998764
No 460
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=93.80 E-value=0.024 Score=57.01 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHH
Q 022155 33 GGIPCNSITELVAESGSGKTQFCL 56 (302)
Q Consensus 33 GGl~~G~i~ei~G~~GsGKT~l~l 56 (302)
--++.|+++.|+|++|||||||+.
T Consensus 605 l~I~~Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 605 VEIPLGVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp EEEESSSEEEEECSTTSSHHHHHH
T ss_pred eEEcCCcEEEEEccCCCChhhhHH
Confidence 468999999999999999999973
No 461
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.78 E-value=0.037 Score=43.24 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~ 61 (302)
-+.|+|++|+|||+|+..++..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3789999999999999888644
No 462
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.78 E-value=0.038 Score=42.88 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHc
Q 022155 41 TELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+|++|+|||+|+..++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 6899999999999999987543
No 463
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.78 E-value=0.039 Score=44.11 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=22.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
...--+.|+|++|+|||+|+..++...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999987653
No 464
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.73 E-value=0.0051 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+++.|+||+|||||||+..++...
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 577899999999999998888764
No 465
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.73 E-value=0.048 Score=45.55 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=28.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
..|+.+.+.||+|||||+++..++......... +....++++...
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-~~~~~~l~~~p~ 118 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-AAECNIVVTQPR 118 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-GGGCEEEEEESS
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-CCceEEEEeccc
Confidence 358999999999999998776665543211111 112267777643
No 466
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.71 E-value=0.033 Score=52.93 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCC
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTE 81 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e 81 (302)
.+.++.|.|++||||||++..++.... ..|. .+.++|.+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~---~~G~---~~~~ld~D 409 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQ---ARGR---KVTLLDGD 409 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTC---CEEEECHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhh---hcCC---eEEEECch
Confidence 378999999999999999999887642 2343 57788754
No 467
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.70 E-value=0.038 Score=42.92 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=17.5
Q ss_pred EEEEeCCCCcHHHHHHHHH
Q 022155 41 TELVAESGSGKTQFCLQLT 59 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la 59 (302)
+.|+|++|+|||+|+..++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999885
No 468
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.70 E-value=0.041 Score=42.60 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHc
Q 022155 41 TELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+|++|+|||+|+..++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999988654
No 469
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.70 E-value=0.095 Score=46.78 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=38.0
Q ss_pred hhHhhhCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCC
Q 022155 26 IIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEF 82 (302)
Q Consensus 26 ~LD~~L~GGl~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~ 82 (302)
.|+.++.. +.-.++.+.|..|+||||++.++|...+.. ..|. +|+.||++.
T Consensus 8 ~L~~~l~~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~---~vllid~D~ 58 (348)
T 3io3_A 8 TLESIVQH--DSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNE---QFLLISTDP 58 (348)
T ss_dssp SSHHHHTC--TTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTS---CEEEEECCS
T ss_pred hHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCC---eEEEEECCC
Confidence 45666642 234799999999999999999999886410 1344 899999983
No 470
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.039 Score=42.80 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~ 61 (302)
-+.|+|++|+|||+|+..++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998764
No 471
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.68 E-value=0.69 Score=41.24 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=25.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
|.-+.+.+|.|+|||..++..+.........+ .+++|+.
T Consensus 58 ~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~---~~~lil~ 96 (400)
T 1s2m_A 58 GRDILARAKNGTGKTAAFVIPTLEKVKPKLNK---IQALIMV 96 (400)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCS---CCEEEEC
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHHHhhccCC---ccEEEEc
Confidence 45689999999999987665555442221122 2678876
No 472
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.66 E-value=0.04 Score=43.30 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999887653
No 473
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.65 E-value=0.043 Score=42.60 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999988653
No 474
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.65 E-value=1 Score=36.59 Aligned_cols=40 Identities=30% Similarity=0.263 Sum_probs=26.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
|.-+.+.+|.|+|||..++..+...... ..+ ..+++++.-
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~~~~~~-~~~--~~~~lil~P 90 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATLQQLEP-VTG--QVSVLVMCH 90 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHCCC-CTT--CCCEEEECS
T ss_pred CCCEEEECCCCCchhhhhhHHHHHhhhc-cCC--CEEEEEEeC
Confidence 4558999999999998776665554221 111 126788763
No 475
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.64 E-value=0.04 Score=43.16 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999987653
No 476
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.59 E-value=0.045 Score=42.43 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999987664
No 477
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.56 E-value=0.048 Score=42.11 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHc
Q 022155 41 TELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+|++|+|||+|+..++...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6799999999999999997664
No 478
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.55 E-value=0.055 Score=50.87 Aligned_cols=42 Identities=12% Similarity=0.003 Sum_probs=32.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHccCCCc-CCCCCCeEEEEeCCC
Q 022155 36 PCNSITELVAESGSGKTQFCLQLTLSAQLPSS-HGGLSASSLYLHTEF 82 (302)
Q Consensus 36 ~~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~-~gg~~~~vlyid~e~ 82 (302)
..|.++.|.|.+||||||++..++.... . .|+ ..+-|+|++.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~---~~~g~--r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL---QFGGG--RYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT---TSCSC--CCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH---HhhcC--cceEEecCCC
Confidence 3678999999999999999999998863 2 333 2567888775
No 479
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.54 E-value=0.043 Score=51.08 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
...-+.|+||||+|||+++..++...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44567899999999999999998875
No 480
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.52 E-value=0.043 Score=42.41 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHc
Q 022155 41 TELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~~ 62 (302)
+.|+|++|+|||+|+..++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999987653
No 481
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.48 E-value=0.045 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 39 SITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
--+.|+|++|+|||+|+..++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998764
No 482
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.46 E-value=0.74 Score=40.24 Aligned_cols=38 Identities=21% Similarity=0.118 Sum_probs=26.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeC
Q 022155 39 SITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHT 80 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~ 80 (302)
.-+.+.+|+|+|||..++..+...... ..+. +++++.-
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~-~~~~---~~lil~P 82 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNE-NNGI---EAIILTP 82 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCS-SSSC---CEEEECS
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcc-cCCC---cEEEEcC
Confidence 678999999999999877666654221 1232 6788763
No 483
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.46 E-value=0.043 Score=42.45 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=17.3
Q ss_pred EEEEeCCCCcHHHHHHHHH
Q 022155 41 TELVAESGSGKTQFCLQLT 59 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la 59 (302)
+.|+|++|+|||+|+..++
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6899999999999998875
No 484
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.43 E-value=0.049 Score=42.17 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999988653
No 485
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.39 E-value=0.048 Score=42.68 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988653
No 486
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.39 E-value=0.052 Score=47.71 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.|.-+.|.|+||+|||++++.++..
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3778999999999999999999764
No 487
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.37 E-value=0.053 Score=42.51 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999988763
No 488
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.37 E-value=0.085 Score=43.28 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=28.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEeCCCCC
Q 022155 42 ELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPF 84 (302)
Q Consensus 42 ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid~e~~~ 84 (302)
...+..|+||||++.++|...+ ..| +|+.||.+...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la---~~g----~VlliD~D~q~ 40 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLA---LQG----ETLLIDGDPNR 40 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHH---TTS----CEEEEEECTTC
T ss_pred EEcCCCCCcHHHHHHHHHHHHH---hcC----CEEEEECCCCC
Confidence 3457889999999999998875 333 79999988543
No 489
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.35 E-value=0.048 Score=42.74 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHH
Q 022155 40 ITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~ 61 (302)
-+.|+|++|+|||+|+..++..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999988754
No 490
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.32 E-value=0.049 Score=48.34 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 022155 39 SITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
.++.|+||+|+|||+++-.++..
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~ 46 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 59999999999999998876543
No 491
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.32 E-value=0.05 Score=43.28 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
-+.|+|++|+|||+|+..++...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 492
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.26 E-value=0.053 Score=42.09 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=21.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..--+.|+|++|+|||+|+..++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458999999999999999987643
No 493
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=93.25 E-value=0.025 Score=51.90 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 34 GIPCNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 34 Gl~~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
-++.+..+.|+|+||+|||||+..++..
T Consensus 153 elk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 153 ELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4677899999999999999999888654
No 494
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.24 E-value=0.057 Score=44.17 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHc
Q 022155 38 NSITELVAESGSGKTQFCLQLTLSA 62 (302)
Q Consensus 38 G~i~ei~G~~GsGKT~l~l~la~~~ 62 (302)
..++.|.|++|||||+++..+|...
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998875
No 495
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.23 E-value=0.068 Score=41.85 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
..-.+.|+|++|+|||+|+..++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999988764
No 496
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.22 E-value=0.048 Score=43.58 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 022155 39 SITELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 39 ~i~ei~G~~GsGKT~l~l~la~~ 61 (302)
--+.|+|++|+|||+|+..++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988654
No 497
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.22 E-value=0.048 Score=43.25 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHH
Q 022155 41 TELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~ 61 (302)
+.|+|++|+|||+|+..++..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 679999999999999988754
No 498
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.21 E-value=0.041 Score=48.08 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=17.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHH
Q 022155 41 TELVAESGSGKTQFCLQLTLS 61 (302)
Q Consensus 41 ~ei~G~~GsGKT~l~l~la~~ 61 (302)
+.|+|++|+|||||+..++..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 489999999999999987654
No 499
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.20 E-value=0.052 Score=50.29 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=22.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHcc
Q 022155 40 ITELVAESGSGKTQFCLQLTLSAQ 63 (302)
Q Consensus 40 i~ei~G~~GsGKT~l~l~la~~~~ 63 (302)
.+.|.|+||||||+++..++..+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999888764
No 500
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.19 E-value=0.41 Score=39.72 Aligned_cols=40 Identities=23% Similarity=0.056 Sum_probs=25.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHccCCCcCCCCCCeEEEEe
Q 022155 37 CNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLH 79 (302)
Q Consensus 37 ~G~i~ei~G~~GsGKT~l~l~la~~~~l~~~~gg~~~~vlyid 79 (302)
.|.-+.+++|.|+|||...+..+.........+ .+++++.
T Consensus 66 ~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~---~~~lil~ 105 (237)
T 3bor_A 66 KGYDVIAQAQSGTGKTATFAISILQQLEIEFKE---TQALVLA 105 (237)
T ss_dssp TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCS---CCEEEEC
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCC---ceEEEEE
Confidence 355689999999999977554444432111122 2678876
Done!