RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022156
(302 letters)
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 398 bits (1023), Expect = e-139
Identities = 181/301 (60%), Positives = 224/301 (74%), Gaps = 1/301 (0%)
Query: 1 MLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIV 60
M LP IGDYTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I
Sbjct: 117 MHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIR 176
Query: 61 RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 120
RP GQ P + PP +G + LD ELEMA VGPGN G+PI +++A +HIFG++LMNDW
Sbjct: 177 RPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDW 236
Query: 121 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 180
SARDIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL
Sbjct: 237 SARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYT 296
Query: 181 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGP 240
+DI+L V +K G + + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG
Sbjct: 297 FDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGS 356
Query: 241 EPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 299
+PES G +LEL+W G K + + G TR FL DGDEV TG C+G+GY VGFG C+GK++P
Sbjct: 357 DPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLP 416
Query: 300 S 300
+
Sbjct: 417 A 417
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics,
PSI-2, protein structure initiative; 1.90A
{Sinorhizobium meliloti}
Length = 359
Score = 125 bits (316), Expect = 7e-34
Identities = 53/298 (17%), Positives = 94/298 (31%), Gaps = 56/298 (18%)
Query: 12 DFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGN 71
D + ++H + +PA+++ P+ Y G + S + I+
Sbjct: 104 DGSAYVNHVELVRKARNAE---MPASFWTDPLIYQGGSDSFLGPRDPILMADD------- 153
Query: 72 SPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV 131
+ +D E E A +V ++EA I VML+ND S R + E
Sbjct: 154 -------AWGIDMEGEAAVIVDDV---PMGATLDEAKAAIRLVMLVNDVSLRGLIPGELA 203
Query: 132 P-LGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIK 190
G + K + SP VT + L + + L + +
Sbjct: 204 KGFGFYQSKPS-SAFSPVAVTPEELG---------EAW----------DGGKLHLPLHVD 243
Query: 191 PAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLE 250
G+ + + + Q + H L +G ++G+GT+S G +
Sbjct: 244 LNGEPFGRANAGID---MTFDFPQLIVHAA-RTRPLSAGTIIGSGTVSNKLEGGPGRPVS 299
Query: 251 LTWNGQKPLSLDGFTRK---------FLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 299
G ++ FL+ GD V K FG K+
Sbjct: 300 EGGAGYSCIAELRMIETIEGGAPKTQFLKFGDVVRIE--MKDRTGHSIFGAIEQKVGK 355
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
genomics, seattle structural genomics center for
infectious isomerase; 1.95A {Mycobacterium abscessus}
Length = 329
Score = 85.9 bits (213), Expect = 2e-19
Identities = 46/235 (19%), Positives = 78/235 (33%), Gaps = 72/235 (30%)
Query: 49 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 108
+S+ ++ PR S LD+E+E+A V+G G I+ ++A
Sbjct: 136 PTSISGPRDAVIAPRT--------------SHALDYEIEIAVVIGKP---GYRIERSQAI 178
Query: 109 DHIFGVMLMNDWSARDIQAWEYVPLGP-----FLGKSFGTT--LSPWIVTLDALEPFACD 161
H+ G ML ND +ARD+ P GK + T PW+ T +
Sbjct: 179 KHVAGYMLANDITARDVALPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDT----- 233
Query: 162 SPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTI 221
+ D L + G+ + + + + + +
Sbjct: 234 ----TFETF-----------DFELRIN----GE----LRQSGSTVDMTLGFAEVVETVS- 269
Query: 222 NGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVT 276
LR+GD++ TGT P G P ++L GD +
Sbjct: 270 ATIALRAGDIILTGT-----PGGCGF-------QFDP-------PRYLRPGDVIE 305
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
thermophilus}
Length = 246
Score = 71.4 bits (176), Expect = 9e-15
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 21/111 (18%)
Query: 49 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 108
+S++ ++ P+G ++ + +E+E+A VVG K + +A
Sbjct: 75 NTSLLPHKGVVLYPKG--------------ARFVHYEVELAVVVG---RPMKRVRAKDAL 117
Query: 109 DHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEP 157
D++ G + ND ARD + P P K T L P++V + +P
Sbjct: 118 DYVLGYTIANDLVARDYVTNTFRP--PIRAKGRDTFLPLGPFLVVEEVEDP 166
>3rr6_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Length = 265
Score = 71.5 bits (176), Expect = 1e-14
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 32/115 (27%)
Query: 49 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 108
+S++ G I P + ++ E E+A V+G K + AA
Sbjct: 96 NTSIIGPGLPIQLPPS--------------ATEVHHEGELAIVIG---RPCKDVPAARAA 138
Query: 109 DHIFGVMLMNDWSARDIQA----WEYVPLGPFLGKSFGTT--LSPWIVTLDALEP 157
++I G + ND SARD Q W K T L PWIVT L+P
Sbjct: 139 ENILGYTIGNDVSARDHQRADGQW-------TRAKGHDTFCPLGPWIVT--DLDP 184
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; lyase, bifunctional enzyme,
multifunctional enzyme decarboxylase; 1.7A {Escherichia
coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Length = 429
Score = 71.5 bits (176), Expect = 3e-14
Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 32/125 (25%)
Query: 49 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 108
+++ VRP + + +E E+ V+G + + + +A
Sbjct: 254 PNTLTGDNQTSVRPNN--------------IEYMHYEAELVVVIG---KQARNVSEADAM 296
Query: 109 DHIFGVMLMNDWSARDIQAWEYVPLGPFL-GKSFGTT--LSPWIVTLDALEPFACDSPKQ 165
D++ G + ND++ RD Y P L KS + IV +A+
Sbjct: 297 DYVAGYTVCNDYAIRDYLENYY---RPNLRVKSRDGLTPMLSTIVPKEAIP--------- 344
Query: 166 DPQPL 170
DP L
Sbjct: 345 DPHNL 349
Score = 67.2 bits (165), Expect = 9e-13
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 35/141 (24%)
Query: 19 HAKNCG-TIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFG 77
+ P A P + + ++V+ G I P+
Sbjct: 15 QLDAWQEAFQQSPYKAPPKT----AVWFIKPRNTVIGCGEPIPFPQ-------------- 56
Query: 78 PSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQA---WEYVPLG 134
+K+ +A +VG + + +AA++I G L ND S +
Sbjct: 57 -GEKVLSGATVALIVG---KTATKVREEDAAEYIAGYALANDVSLPEESFYRPA------ 106
Query: 135 PFLGKSFGTT--LSPWIVTLD 153
K + + +
Sbjct: 107 -IKAKCRDGFCPIGETVALSN 126
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
structural GE NPPSFA; 2.20A {Thermus thermophilus}
Length = 264
Score = 69.6 bits (171), Expect = 6e-14
Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 39/132 (29%)
Query: 26 IFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFE 85
+F NA+ G + + P +++L +E
Sbjct: 78 LFLKGPNALAR---------PGNPRDPWGTAEPVPYPFF--------------TEELHYE 114
Query: 86 LEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQA----WEYVPLGPFLGKSF 141
E+A VVG + + + +A DH+ G + D +ARD+Q W KS
Sbjct: 115 GELAVVVG---DRMRHVPPEKALDHVLGYTVAVDITARDVQKKDLQW-------VRAKSA 164
Query: 142 GTT--LSPWIVT 151
L PW+ T
Sbjct: 165 DKFLPLGPWLET 176
>1saw_A Hypothetical protein FLJ36880; structural genomics,
fumarylacetoacetatehydrolase family, unknown function;
2.20A {Homo sapiens} SCOP: d.177.1.1
Length = 225
Score = 68.8 bits (169), Expect = 7e-14
Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 58/219 (26%)
Query: 49 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 108
+++ G+ I+ P ++ L ELE+ V+G + + A
Sbjct: 50 STAYAPEGSPILMPAY--------------TRNLHHELELGVVMGKR---CRAVPEAAAM 92
Query: 109 DHIFGVMLMNDWSARDIQAWEYVPLGPF-LGKSFGTT--LSPWIVTLDALEPFACDSPKQ 165
D++ G L D +ARD+Q P+ L KSF + +S ++
Sbjct: 93 DYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPK----------EKIP 142
Query: 166 DPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH----HTI 221
DP + L+V + + + +++ +++ T
Sbjct: 143 DPH-----------KLKLWLKV--------NGELRQEGETSSMIFSIPYIISYVSKIIT- 182
Query: 222 NGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLS 260
L GD++ TGT G P +E +G ++
Sbjct: 183 ----LEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMT 217
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
genomics, PSI-2, protein structure initiative; HET: TAR;
2.10A {Oleispira antarctica} PDB: 3v77_A*
Length = 224
Score = 67.6 bits (166), Expect = 2e-13
Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 70/205 (34%)
Query: 49 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 108
ASS V G P+ + ELE+A ++G + + A
Sbjct: 47 ASSAVPFGPVFSIPKD--------------QGSVHHELEIAILIG---KALSRASTEQVA 89
Query: 109 DHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--LSPWIVTLDALEPF 158
+ I G+ L D + RD+Q WE KSF L+ ++
Sbjct: 90 ESIAGIGLGLDLTLRDVQDQLKEKGHPWE-------RAKSFDGACPLTEFVAV------- 135
Query: 159 ACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH 218
+ ++LE + + + + + + +AH
Sbjct: 136 -----NLASEDEWQ-------AIGLTLEK--------NGQFQQQGSSAEMLFPILPLIAH 175
Query: 219 ----HTINGCNLRSGDLLGTGTISG 239
+ L+ GD++ TGT +G
Sbjct: 176 MSEHFS-----LQPGDVILTGTPAG 195
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid,
structural genomics, center for structural genomics O
infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A
Length = 221
Score = 66.8 bits (164), Expect = 3e-13
Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 72/205 (35%)
Query: 49 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 108
+++ + P+ + E+E+A ++G K + A
Sbjct: 51 ETALCDIRQPVSIPKD--------------FGSVHHEIELAVLIGTP---LKQASEDRVA 93
Query: 109 DHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--LSPWIVTLDALEPF 158
I G + D + R++QA WE K+F + +S +I
Sbjct: 94 RAIAGYGVALDLTLRELQAGFKKAGQPWE-------KAKAFDGSCPISGFIPV------- 139
Query: 159 ACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH 218
+ D Q D+SL + + + + N + + + +++
Sbjct: 140 ---AEFGDAQ-----------QADLSLTI--------NGEIRQQGNTRDMITPIIPLISY 177
Query: 219 ----HTINGCNLRSGDLLGTGTISG 239
T LR+GD++ TGT G
Sbjct: 178 MSRFFT-----LRAGDIVLTGTPQG 197
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
2q1c_X 2q1d_X 3bqb_A
Length = 293
Score = 67.8 bits (166), Expect = 3e-13
Identities = 43/230 (18%), Positives = 69/230 (30%), Gaps = 79/230 (34%)
Query: 49 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 108
+ V G I S+ E E+A V+ +
Sbjct: 121 PNRCVGHGEAIAVRSD--------------SEWTLPEPELAVVLD-------------SN 153
Query: 109 DHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQD 166
I G +M+D SARD++A PL K + P IVT D ++ +
Sbjct: 154 GKILGYTIMDDVSARDLEAEN--PLYLPQSKIYAGCCAFGPVIVTSDEIK---------N 202
Query: 167 PQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNL 226
P L DI+L++ + N + + ++ + I +
Sbjct: 203 PYSL-----------DITLKIV----REGRVFFEGSVNTNKMRRKI-EEQIQYLIRDNPI 246
Query: 227 RSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVT 276
G +L TGT P + K L+D D V
Sbjct: 247 PDGTILTTGTAIVPGRD-----------------------KGLKDEDIVE 273
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region;
dimer, PSI, protein structure initiative; 2.20A
{Saccharomyces cerevisiae} SCOP: d.177.1.1
Length = 259
Score = 60.4 bits (147), Expect = 8e-11
Identities = 37/218 (16%), Positives = 64/218 (29%), Gaps = 66/218 (30%)
Query: 49 ASSVVISGTDIVRPRG--------QFAPSGNSPPPFGP--SQKLDFELEMAAVVGPGNEL 98
SS+V + + G +P P K+ E+E+A +V +
Sbjct: 41 TSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVS---KH 97
Query: 99 GKPIDVN---EAADHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--L 145
+ E D I GV L D +AR++Q W + K F T +
Sbjct: 98 LSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWT-------ISKGFDTFMPI 150
Query: 146 SPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNF 205
S + + + + V + +
Sbjct: 151 SAIVSREK----------------FSSYKSNLQDIFRVKCSV--------NGQLRQDGGT 186
Query: 206 KYLYWTLTQQLAH----HTINGCNLRSGDLLGTGTISG 239
+ L + L H + L GD++ TGT +G
Sbjct: 187 NLMLHPLHKILQHISTMIS-----LEPGDIILTGTPAG 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 6e-04
Identities = 54/251 (21%), Positives = 82/251 (32%), Gaps = 108/251 (43%)
Query: 31 ANA-VPANWFHLPIAYHGRASSVVISGTDIVRP----------RGQFAPSGN--SPPPFG 77
N+ +PA + I+ A ++V+SG P R APSG S PF
Sbjct: 356 TNSHLPAG-KQVEISLVNGAKNLVVSGP----PQSLYGLNLTLRKAKAPSGLDQSRIPF- 409
Query: 78 PSQ-KLDFELEMAAVVGPGNELGKPIDV-------NEAADHIFGVMLMND--WSARDIQA 127
S+ KL F L P+ A+D I ++ N+ ++A+DIQ
Sbjct: 410 -SERKLKFSNRF---------L--PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ- 456
Query: 128 WEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPL-PYLAEKISKNYDISLE 186
+P+ + T D D + L ++E+I
Sbjct: 457 ---IPV-------YDTF--------DG----------SDLRVLSGSISERI--------- 479
Query: 187 VQIKPAGKEDSCVVTRSNFKYLYWTLTQQL-AHHTINGCNLRSGDLLGTGTISGPEPESL 245
V C++ + W T Q A H + D G G SG L
Sbjct: 480 VD---------CIIR----LPVKWETTTQFKATHIL--------D-FGPGGASG-----L 512
Query: 246 GCLLELTWNGQ 256
G L +G
Sbjct: 513 GVLTHRNKDGT 523
Score = 30.8 bits (69), Expect = 0.72
Identities = 20/120 (16%), Positives = 34/120 (28%), Gaps = 42/120 (35%)
Query: 26 IFRGPA-------NAVPA-------------NWFHLP----IAYH--G-----RASSVVI 54
FR PA + +P A H G + + V+
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 55 S---GTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHI 111
S ++V RG P + ++ M A + PG + EA ++
Sbjct: 1778 SIESLVEVVFYRGMTM---QVAVPRDELGRSNY--GMIA-INPG-RVAASFS-QEALQYV 1829
Score = 26.9 bits (59), Expect = 9.6
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 12/94 (12%)
Query: 184 SLEVQIK-PAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGT--GTISGP 240
SLE + P + F + T+ A +L+G G +S
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA---ELVGKFLGYVSSL 71
Query: 241 -EPESLGCLLELTWNGQKPLSLDGFTRKFLEDGD 273
EP +G ++ L L F +LE D
Sbjct: 72 VEPSKVGQFDQVL-----NLCLTEFENCYLEGND 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 1.4
Identities = 38/265 (14%), Positives = 63/265 (23%), Gaps = 80/265 (30%)
Query: 37 NWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGP----SQKLDFELEMA--- 89
+ PI R S++ R R N F + +L A
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 90 -------AVVG-PGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSF 141
+ G G GK + + + F
Sbjct: 147 LRPAKNVLIDGVLG--SGKTWVALDVC--------------LSYKVQCKMDFKIF----- 185
Query: 142 GTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVT 201
W+ L C+SP+ + L L +I N+ +
Sbjct: 186 ------WL-NLKN-----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---------- 223
Query: 202 RSNFKYLYWTLTQQLAHHTINGC-----NLRSGDLLGTGTISGPEPESLGC-LLELTWNG 255
+ + L + L C N+++ +L C +L T
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--------NAFNLSCKILLTTRFK 275
Query: 256 QKPLSLDGFTRK--FLEDGDEVTFT 278
Q L T L+ T T
Sbjct: 276 QVTDFLSAATTTHISLDHHSM-TLT 299
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, S
genomics, joint center for structural genomics, JCSG;
HET: MSE UNL; 2.00A {Bacillus halodurans}
Length = 208
Score = 27.9 bits (63), Expect = 3.0
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 263 GFTRKFLEDGDEVTFTGFCKGNG 285
+ + +G VT G KG+G
Sbjct: 179 HTCYQTIVNGKTVTVGGVAKGSG 201
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 4.8
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 149 IVTLDA-LEPFACDSPKQDPQPLPYLAEKIS 178
+ L A L+ +A DS P LA K +
Sbjct: 22 LKKLQASLKLYADDSA-------PALAIKAT 45
>3it4_A Arginine biosynthesis bifunctional protein ARGJ alpha chain;
ornithine acetyltransferase, structural genomics; 1.70A
{Mycobacterium tuberculosis} PDB: 3it6_A
Length = 199
Score = 27.2 bits (61), Expect = 5.8
Identities = 7/17 (41%), Positives = 7/17 (41%)
Query: 269 LEDGDEVTFTGFCKGNG 285
L D T G KG G
Sbjct: 176 LHHHDNWTVGGMAKGAG 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.442
Gapped
Lambda K H
0.267 0.0823 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,927,146
Number of extensions: 292753
Number of successful extensions: 650
Number of sequences better than 10.0: 1
Number of HSP's gapped: 628
Number of HSP's successfully gapped: 24
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)