RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022156
(302 letters)
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 298
Score = 330 bits (846), Expect = e-114
Identities = 178/295 (60%), Positives = 221/295 (74%), Gaps = 1/295 (0%)
Query: 7 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQF 66
IGDYTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I RP GQ
Sbjct: 3 IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQM 62
Query: 67 APSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ 126
P + PP +G + LD ELEMA VGPGN G+PI +++A +HIFG++LMNDWSARDIQ
Sbjct: 63 RPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 122
Query: 127 AWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLE 186
WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL +DI+L
Sbjct: 123 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 182
Query: 187 VQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLG 246
V +K G + + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG +PES G
Sbjct: 183 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG 242
Query: 247 CLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 300
+LEL+W G K + + G TR FL DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 243 SMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 297
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 257
Score = 71.4 bits (174), Expect = 4e-15
Identities = 44/244 (18%), Positives = 74/244 (30%), Gaps = 43/244 (17%)
Query: 19 HAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPS--------- 69
H K N+ P P + SS+V + + + A S
Sbjct: 21 HIKELN-------NSTPKQ----PFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDG 69
Query: 70 -GNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAW 128
P K+ E+E+A +V + E D I GV L D +AR++Q
Sbjct: 70 TNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDE 129
Query: 129 EYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQ 188
P+ T P + + + S QD + + V
Sbjct: 130 AKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQD-------------IFRVKCSV- 175
Query: 189 IKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCL 248
+ + + L + L H + +L GD++ TGT +G G
Sbjct: 176 -------NGQLRQDGGTNLMLHPLHKILQHIS-TMISLEPGDIILTGTPAGVGELKPGDR 227
Query: 249 LELT 252
+
Sbjct: 228 VHCE 231
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 47.4 bits (112), Expect = 5e-07
Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 46/215 (21%)
Query: 42 PIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKP 101
P+ + +++ G+ I+ P L ELE+ V+ + +
Sbjct: 35 PVLFLKPSTAYAPEGSPILMPAYTR--------------NLHHELELGVVM---GKRCRA 77
Query: 102 IDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPF-LGKSFGTTLSPWIVTLDALEPFAC 160
+ A D++ G L D +ARD+Q P+ L KSF +
Sbjct: 78 VPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVP-------- 129
Query: 161 DSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHT 220
EKI + + L +++ + + + +++ +++ +
Sbjct: 130 -------------KEKIPDPHKLKLWLKV------NGELRQEGETSSMIFSIPYIISYVS 170
Query: 221 INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 255
L GD++ TGT G P +E +G
Sbjct: 171 -KIITLEEGDIILTGTPKGVGPVKENDEIEAGIHG 204
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 216
Score = 39.5 bits (91), Expect = 2e-04
Identities = 30/195 (15%), Positives = 65/195 (33%), Gaps = 32/195 (16%)
Query: 61 RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 120
+ + + + +E E+ V+G + + +A D++ G + ND+
Sbjct: 39 KAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQ---ARNVSEADAMDYVAGYTVCNDY 95
Query: 121 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 180
+ RD Y P + T + IV E I
Sbjct: 96 AIRDYLENYYRPNLRVKSRDGLTPMLSTIVP----------------------KEAIPDP 133
Query: 181 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGP 240
++++L + + + + L +++ +A+ + L GD++ TGT G
Sbjct: 134 HNLTLRTFV------NGELRQQGTTADLIFSVPFLIAYLS-EFMTLNPGDMIATGTPKGL 186
Query: 241 EPESLGCLLELTWNG 255
G + + G
Sbjct: 187 SDVVPGDEVVVEVEG 201
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 213
Score = 34.5 bits (78), Expect = 0.010
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 209 YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 255
Q L+ + L GD + GT G + + G
Sbjct: 150 QRNAAQLLSALS-EFATLNPGDAILLGTPQARVEIQPGDRVRVLAEG 195
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 32.5 bits (73), Expect = 0.038
Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 31/196 (15%)
Query: 61 RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 120
+P + E+E+A ++G + I G + D
Sbjct: 47 KPETALCDLRQPLAIPSDFGSVHHEVELAVLIGAT---LRQATEEHVRKAIAGYGVALDL 103
Query: 121 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPL-PYLAEKISK 179
+ RD+Q P+ A D+ + +
Sbjct: 104 TLRDVQGKMKKAGQPWEK------------------AKAFDNSCPLSGFIPAAEFTGDPQ 145
Query: 180 NYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISG 239
N +SL V + + + + +A+ + L++GD++ TGT G
Sbjct: 146 NTTLSLSV--------NGEQRQQGTTADMIHKIVPLIAYMS-KFFTLKAGDVVLTGTPDG 196
Query: 240 PEPESLGCLLELTWNG 255
P G L +T++G
Sbjct: 197 VGPLQSGDELTVTFDG 212
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD
{Escherichia coli [TaxId: 562]}
Length = 261
Score = 28.8 bits (63), Expect = 0.77
Identities = 32/183 (17%), Positives = 53/183 (28%), Gaps = 24/183 (13%)
Query: 73 PPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVP 132
PF + E E+A V+ I +E + I V+ + I+ W
Sbjct: 93 IIPFSRVLQPRIEAEIALVLNRDLP-ATDITFDELYNAIEWVLPALEVVGSRIRDW---- 147
Query: 133 LGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPA 192
I +D + A P A KN + + +
Sbjct: 148 ---------------SIQFVDTVADNASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEV 192
Query: 193 GKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELT 252
W L +++A G LR+GD++ TG + + G E
Sbjct: 193 SSGRGSECLGHPLNAAVW-LARKMASL---GEPLRTGDIILTGALGPMVAVNAGDRFEAH 248
Query: 253 WNG 255
G
Sbjct: 249 IEG 251
>d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain
{Escherichia coli [TaxId: 562]}
Length = 133
Score = 27.6 bits (61), Expect = 1.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 4 PMEIGDYTDFFSSMHHAKNCG-TIFRGPAN 32
PME+ D D K+ +F GPAN
Sbjct: 2 PMELTDVADLL------KSVEFAVFAGPAN 25
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA
{Ochrobactrum anthropi [TaxId: 529]}
Length = 367
Score = 28.0 bits (62), Expect = 1.6
Identities = 10/103 (9%), Positives = 24/103 (23%), Gaps = 12/103 (11%)
Query: 35 PANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVV-- 92
+ +P+ A +G + G P + + A V
Sbjct: 58 MQSETPVPV----YAGVHRFNGNGEMTGTHWIEDGGYFLGPVVITNTHGIGMAHHATVRW 113
Query: 93 -----GPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEY 130
+ + + + L ND + + +
Sbjct: 114 MVDRYASTYQTDDFLWIMPVVAETYDGAL-NDINGFPVTEADV 155
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium
meliloti [TaxId: 382]}
Length = 79
Score = 25.9 bits (57), Expect = 1.6
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 96 NELGKPIDVNEAADHIFGVMLMNDW 120
G P+ E+ + ++G M +W
Sbjct: 54 EASGVPMSKEESREIVYG-MPYEEW 77
>d2ifea_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 91
Score = 25.8 bits (57), Expect = 2.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 266 RKFLEDGDEVTFTGFCKG 283
+FLE+GD+ T +G
Sbjct: 26 IRFLEEGDKAKITLRFRG 43
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 26.5 bits (57), Expect = 3.8
Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 19/103 (18%)
Query: 109 DHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQ 168
I G + + +P K T +P++ + +
Sbjct: 171 IGITGWVCDERRGLELRELLPLIPAE----KLLIETDAPYL----LPRDLTPKPSSRRNE 222
Query: 169 P--LPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 209
P LP++ ++I+ T +N K L+
Sbjct: 223 PAHLPHILQRIAHWRGEDA---------AWLAATTDANVKTLF 256
>d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin
beta {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 25.6 bits (56), Expect = 4.6
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 269 LEDGDEVTFTGFCKGNGYTVGFGTCSG 295
L + ++F C N G +C G
Sbjct: 57 LPEELSLSFNATCLNNEVIPGLKSCMG 83
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
8010]}
Length = 109
Score = 25.2 bits (55), Expect = 5.0
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 227 RSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGD-EVTFTGFCK 282
++ D +G I E + + F + +DGD ++ F
Sbjct: 48 KAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFET 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.442
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,217,559
Number of extensions: 57703
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 14
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)