BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022157
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGP|A Chain A, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|B Chain B, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|C Chain C, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|D Chain D, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|E Chain E, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|F Chain F, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
Length = 393
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/306 (72%), Positives = 254/306 (83%), Gaps = 12/306 (3%)
Query: 9 PKEYINLLLFCA--VRTNLSFLYHFL----------SAVWSGAKLADVLELVGIPNLTSV 56
PK + L CA RT +S + + +AVW GAKLADVLELVGIP LT+
Sbjct: 88 PKYNVTATLQCAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTAS 147
Query: 57 TRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLR 116
T G +HVEFVS+D+CKEENGGPYKASI LSQATNPEADVLLAYEMNGE LNRDHG+PLR
Sbjct: 148 TNLGARHVEFVSVDRCKEENGGPYKASITLSQATNPEADVLLAYEMNGETLNRDHGFPLR 207
Query: 117 VVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQ 176
VVVPGVIGARSVKWLD+IN++AEE QGFFMQKDYKMFPPSVNWDNINW SRRP MDFPVQ
Sbjct: 208 VVVPGVIGARSVKWLDSINVIAEESQGFFMQKDYKMFPPSVNWDNINWSSRRPQMDFPVQ 267
Query: 177 CVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIAD 236
ICS+EDV ++KPGK + GYAVSGGGRGIERVDIS+DGGKNWVEASR Q+ G YI++
Sbjct: 268 SAICSVEDVQMVKPGKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISE 327
Query: 237 HMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVR 296
H SSDKWAWV FE ID+ +T+++AKAVD+AANVQPE+VE++WNLRGVLNTSWHRV +R
Sbjct: 328 HSSSDKWAWVLFEATIDVSQTTEVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLR 387
Query: 297 VGHSNM 302
+GHSN+
Sbjct: 388 LGHSNL 393
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 175/311 (56%), Gaps = 27/311 (8%)
Query: 1 MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
+ L PK + L CA R+ +S + +A W GA+L DVL
Sbjct: 167 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 226
Query: 49 GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
G P G HV F +D + G PY ASIP +A +P ADVLLAYEMNG L
Sbjct: 227 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 280
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
RDHG+P+RVVVPGV+GARSVKWL + + +E + Q DYK F P V+WD +++++
Sbjct: 281 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAP 340
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
+ + PVQ + + PG+ V GYA SGGGR + RVD+S+DGG+ W A
Sbjct: 341 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 400
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
P A WAW +E+ + + T +IV KAVD++ NVQP+SV IWNLRGVL
Sbjct: 401 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVL 453
Query: 287 NTSWHRVQVRV 297
+T+WHRV+V V
Sbjct: 454 STAWHRVRVSV 464
>pdb|2A9B|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Sulfite
Oxidase At Resting State
pdb|2A9C|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Chicken
Sulfite Oxidase With The Bound Product, Sulfate, At The
Active Site
pdb|2A9C|B Chain B, Crystal Structure Of R138q Mutant Of Recombinant Chicken
Sulfite Oxidase With The Bound Product, Sulfate, At The
Active Site
Length = 372
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 175/311 (56%), Gaps = 27/311 (8%)
Query: 1 MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
+ L PK + L CA R+ +S + +A W GA+L DVL
Sbjct: 73 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 132
Query: 49 GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
G P G HV F +D + G PY ASIP +A +P ADVLLAYEMNG L
Sbjct: 133 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 186
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
RDHG+P+RVVVPGV+GARSVKWL + + +E + Q DYK F P V+WD +++++
Sbjct: 187 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAP 246
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
+ + PVQ + + PG+ V GYA SGGGR + RVD+S+DGG+ W A
Sbjct: 247 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 306
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
P A WAW +E+ + + T +IV KAVD++ NVQP+SV IWNLRGVL
Sbjct: 307 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVL 359
Query: 287 NTSWHRVQVRV 297
+T+WHRV+V V
Sbjct: 360 STAWHRVRVSV 370
>pdb|2A9D|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With Arg At Residue 161
pdb|2A9D|B Chain B, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With Arg At Residue 161
Length = 372
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 175/311 (56%), Gaps = 27/311 (8%)
Query: 1 MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
+ L PK + L CA R+ +S + +A W GA+L DVL
Sbjct: 73 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 132
Query: 49 GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
G P G HV F +D + G PY ASIP +A +P ADVLLAYEMNG L
Sbjct: 133 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 186
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
RDHG+P+RVVVPGV+GARSVKWL + + +E + Q DYK F P V+WD +++++
Sbjct: 187 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAP 246
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
+ + PVQ + + PG+ V GYA SGGGR + RVD+S+DGG+ W A
Sbjct: 247 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 306
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
P A WAW +E+ + + T +IV KAVD++ NVQP+SV IWNLRGVL
Sbjct: 307 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVL 359
Query: 287 NTSWHRVQVRV 297
+T+WHRV+V V
Sbjct: 360 STAWHRVRVSV 370
>pdb|2A99|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
At Resting State
pdb|2A9A|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With The Bound Product, Sulfate, At The Active Site
pdb|2A9A|B Chain B, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With The Bound Product, Sulfate, At The Active Site
Length = 372
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 175/311 (56%), Gaps = 27/311 (8%)
Query: 1 MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
+ L PK + L CA R+ +S + +A W GA+L DVL
Sbjct: 73 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 132
Query: 49 GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
G P G HV F +D + G PY ASIP +A +P ADVLLAYEMNG L
Sbjct: 133 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 186
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
RDHG+P+RVVVPGV+GARSVKWL + + +E + Q DYK F P V+WD +++++
Sbjct: 187 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAP 246
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
+ + PVQ + + PG+ V GYA SGGGR + RVD+S+DGG+ W A
Sbjct: 247 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 306
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
P A WAW +E+ + + T +IV KAVD++ NVQP+SV IWNLRGVL
Sbjct: 307 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVL 359
Query: 287 NTSWHRVQVRV 297
+T+WHRV+V V
Sbjct: 360 STAWHRVRVSV 370
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 123/267 (46%), Positives = 162/267 (60%), Gaps = 15/267 (5%)
Query: 33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
+A W GA+L DVL G P G HV F +D + G PY ASIP +A +P
Sbjct: 211 TARWGGARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSP 264
Query: 93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
ADVLLAYEMNG L RDHG+P+RVVVPGV+GARSVKWL + + +E + Q DYK
Sbjct: 265 AADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKG 324
Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
F P V+WD +++++ + + PVQ + + PG+ V GYA SGGGR + RVD+
Sbjct: 325 FSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDV 384
Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAAN 270
S+DGG+ W A P A WAW +E+ + + T +IV KAVD++ N
Sbjct: 385 SLDGGRTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYN 437
Query: 271 VQPESVETIWNLRGVLNTSWHRVQVRV 297
VQP+SV IWNLRGVL+T+WHRV+V V
Sbjct: 438 VQPDSVAPIWNLRGVLSTAWHRVRVSV 464
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 123/267 (46%), Positives = 162/267 (60%), Gaps = 15/267 (5%)
Query: 33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
+A W GA+L DVL G P G HV F +D + G PY ASIP +A +P
Sbjct: 211 TARWGGARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSP 264
Query: 93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
ADVLLAYEMNG L RDHG+P+RVVVPGV+GARSVKWL + + +E + Q DYK
Sbjct: 265 AADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKG 324
Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
F P V+WD +++++ + + PVQ + + PG+ V GYA SGGGR + RVD+
Sbjct: 325 FSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDV 384
Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAAN 270
S+DGG+ W A P A WAW +E+ + + T +IV KAVD++ N
Sbjct: 385 SLDGGRTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYN 437
Query: 271 VQPESVETIWNLRGVLNTSWHRVQVRV 297
VQP+SV IWNLRGVL+T+WHRV+V V
Sbjct: 438 VQPDSVAPIWNLRGVLSTAWHRVRVSV 464
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 203 bits (517), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 175/311 (56%), Gaps = 27/311 (8%)
Query: 1 MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
+ L PK + L CA R+ +S + +A W GA+L DVL
Sbjct: 167 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 226
Query: 49 GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
G P G HV F +D + G PY ASIP +A +P ADVLLAYEMNG L
Sbjct: 227 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 280
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
RDHG+P+RVVVPGV+GARSVKWL + + +E + Q D+K F P V+WD +++++
Sbjct: 281 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDFKGFSPCVDWDTVDYRTAP 340
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
+ + PVQ + + PG+ V GYA SGGGR + RVD+S+DGG+ W A
Sbjct: 341 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 400
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
P A WAW +E+ + + T +IV KAVD++ NVQP+SV IWNLRGVL
Sbjct: 401 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVL 453
Query: 287 NTSWHRVQVRV 297
+T+WHRV+V V
Sbjct: 454 STAWHRVRVSV 464
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 173/311 (55%), Gaps = 27/311 (8%)
Query: 1 MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
+ L PK + L CA R+ +S + +A W GA+L DVL
Sbjct: 167 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 226
Query: 49 GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
G P G HV F +D + G PY ASIP +A +P ADVLLAYEMNG L
Sbjct: 227 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 280
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
RDHG+P+RVVVPGV+GARSVKWL + + +E + Q D K F P V+WD +++++
Sbjct: 281 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDNKGFSPCVDWDTVDYRTAP 340
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
+ + PVQ + + PG+ V GYA SGGGR + RVD+S+DGG+ W A
Sbjct: 341 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 400
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
P A WAW +E+ + + T +IV KAVD++ NVQP+SV IWNL GVL
Sbjct: 401 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLMGVL 453
Query: 287 NTSWHRVQVRV 297
+T+WHRV+V V
Sbjct: 454 STAWHRVRVSV 464
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 173/311 (55%), Gaps = 27/311 (8%)
Query: 1 MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
+ L PK + L CA R+ +S + +A W GA+L DVL
Sbjct: 167 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 226
Query: 49 GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
G P G HV F +D + G PY ASIP +A +P ADVLLAYEMNG L
Sbjct: 227 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 280
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
RDHG+P+RVVVPGV+GARSVKWL + + +E + Q D K F P V+WD +++++
Sbjct: 281 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDNKGFSPCVDWDTVDYRTAP 340
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
+ + PVQ + + PG+ V GYA SGGGR + RVD+S+DGG+ W A
Sbjct: 341 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 400
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
P A WAW +E+ + + T +IV KAVD++ NVQP+SV IWNL G+L
Sbjct: 401 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLMGML 453
Query: 287 NTSWHRVQVRV 297
+T+WHRV+V V
Sbjct: 454 STAWHRVRVSV 464
>pdb|2BII|A Chain A, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
pdb|2BII|B Chain B, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
Length = 424
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 144/291 (49%), Gaps = 35/291 (12%)
Query: 33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
+++W+G L DV+ K FV ++ G Y I LS +P
Sbjct: 105 TSLWTGCMLGDVIGKA----------RPSKRARFVWMEGADNPANGAYGTCIRLSWCMDP 154
Query: 93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
E +++AY+ NGE L+ DHG PLRVV+PGVIG RSVKWL + + + ++ D ++
Sbjct: 155 ERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRV 214
Query: 153 FPPSVN-----WDNINWKSRR-PLMDFPVQCVICSLEDVNVMK--PGKAKVSGYAVSGGG 204
P V D+ WK R + D +Q +IC E+ V+K + +++G+ +GGG
Sbjct: 215 LPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGG 274
Query: 205 RGIERVDISVDGGKNWVEA------SRYQKT-------GIPYIADHMSSDKWA-WVFFEV 250
I R+++S+D GK+W A RY++ G+ + D MS W W
Sbjct: 275 VRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVP 334
Query: 251 IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQ-VRVGHS 300
+ ++ S I+ + +D VQP ++ WN+ +LN W+RV +R G S
Sbjct: 335 LSELARSKDILIRGMDERMMVQPRTM--YWNVTSMLNNWWYRVAIIREGES 383
>pdb|2BIH|A Chain A, Crystal Structure Of The Molybdenum-containing Nitrate
Reducing Fragment Of Pichia Angusta Assimilatory Nitrate
Reductase
Length = 474
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 144/291 (49%), Gaps = 35/291 (12%)
Query: 33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
+++W+G L DV+ K FV ++ G Y I LS +P
Sbjct: 155 TSLWTGCMLGDVIGKA----------RPSKRARFVWMEGADNPANGAYGTCIRLSWCMDP 204
Query: 93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
E +++AY+ NGE L+ DHG PLRVV+PGVIG RSVKWL + + + ++ D ++
Sbjct: 205 ERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRV 264
Query: 153 FPPSVN-----WDNINWKSRR-PLMDFPVQCVICSLEDVNVMK--PGKAKVSGYAVSGGG 204
P V D+ WK R + D +Q +IC E+ V+K + +++G+ +GGG
Sbjct: 265 LPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGG 324
Query: 205 RGIERVDISVDGGKNWVEA------SRYQKT-------GIPYIADHMSSDKWA-WVFFEV 250
I R+++S+D GK+W A RY++ G+ + D MS W W
Sbjct: 325 VRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVP 384
Query: 251 IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQ-VRVGHS 300
+ ++ S I+ + +D VQP ++ WN+ +LN W+RV +R G S
Sbjct: 385 LSELARSKDILIRGMDERMMVQPRTM--YWNVTSMLNNWWYRVAIIREGES 433
>pdb|2CA3|A Chain A, Sulfite Dehydrogenase From Starkeya Novella R55m Mutant
Length = 373
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 123/258 (47%), Gaps = 28/258 (10%)
Query: 33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
+A W G L VLE G+ ++G K V F +D + ++ + AT+
Sbjct: 128 NARWRGVPLKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDG 180
Query: 93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
E V+LAY MNG L +GYPLR+VVPG G VK L+ I ++ +E GF+M+ Y++
Sbjct: 181 E--VMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRI 238
Query: 153 FPPSVNWDNINWKSRR---PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIER 209
P + K+ P+ F V+ I ++E+ +K G+ + G A GG GI +
Sbjct: 239 -PDNACACTEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQ 296
Query: 210 VDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV-AKAVDTA 268
V +S D GK+W A+ G K+++ ++ ++ + ++ +A +
Sbjct: 297 VSVSADAGKSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNAR 345
Query: 269 ANVQPESVETIWNLRGVL 286
QP ++ WN G +
Sbjct: 346 GETQP--MQATWNPAGYM 361
>pdb|2BLF|A Chain A, Sulfite Dehydrogenase From Starkeya Novella
pdb|2BPB|A Chain A, Sulfite Dehydrogenase From Starkeya Novella
Length = 373
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 123/258 (47%), Gaps = 28/258 (10%)
Query: 33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
+A W G L VLE G+ ++G K V F +D + ++ + AT+
Sbjct: 128 NARWRGVPLKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDG 180
Query: 93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
E V+LAY MNG L +GYPLR+VVPG G VK L+ I ++ +E GF+M+ Y++
Sbjct: 181 E--VMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRI 238
Query: 153 FPPSVNWDNINWKSRR---PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIER 209
P + K+ P+ F V+ I ++E+ +K G+ + G A GG GI +
Sbjct: 239 -PDNACACTEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQ 296
Query: 210 VDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV-AKAVDTA 268
V +S D GK+W A+ G K+++ ++ ++ + ++ +A +
Sbjct: 297 VSVSADAGKSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNAR 345
Query: 269 ANVQPESVETIWNLRGVL 286
QP ++ WN G +
Sbjct: 346 GETQP--MQATWNPAGYM 361
>pdb|2CA4|A Chain A, Sulfite Dehydrogenase From Starkeya Novella Mutant
Length = 373
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 123/258 (47%), Gaps = 28/258 (10%)
Query: 33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
+A W G L VLE G+ ++G K V F +D + ++ + AT+
Sbjct: 128 NARWRGVPLKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDG 180
Query: 93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
E V+LAY MNG L +GYPLR+VVPG G VK L+ I ++ +E GF+M+ Y++
Sbjct: 181 E--VMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRI 238
Query: 153 FPPSVNWDNINWKSRR---PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIER 209
P + K+ P+ F V+ I ++E+ +K G+ + G A GG GI +
Sbjct: 239 -PDNACACTEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQ 296
Query: 210 VDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV-AKAVDTA 268
V +S D GK+W A+ G K+++ ++ ++ + ++ +A +
Sbjct: 297 VSVSADAGKSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNAR 345
Query: 269 ANVQPESVETIWNLRGVL 286
QP ++ WN G +
Sbjct: 346 GETQP--MQATWNPAGYM 361
>pdb|2C9X|A Chain A, Sulfite Dehydrogenase From Starkeya Novella Y236f Mutant
Length = 373
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 123/258 (47%), Gaps = 28/258 (10%)
Query: 33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
+A W G L VLE G+ ++G K V F +D + ++ + AT+
Sbjct: 128 NARWRGVPLKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDG 180
Query: 93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
E V+LAY MNG L +GYPLR+VVPG G VK L+ I ++ +E GF+M+ +++
Sbjct: 181 E--VMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAFRI 238
Query: 153 FPPSVNWDNINWKSRR---PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIER 209
P + K+ P+ F V+ I ++E+ +K G+ + G A GG GI +
Sbjct: 239 -PDNACACTEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQ 296
Query: 210 VDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV-AKAVDTA 268
V +S D GK+W A+ G K+++ ++ ++ + ++ +A +
Sbjct: 297 VSVSADAGKSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNAR 345
Query: 269 ANVQPESVETIWNLRGVL 286
QP ++ WN G +
Sbjct: 346 GETQP--MQATWNPAGYM 361
>pdb|2XTS|A Chain A, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From
Paracoccus Pantotrophus
pdb|2XTS|C Chain C, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From
Paracoccus Pantotrophus
Length = 390
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 116/272 (42%), Gaps = 29/272 (10%)
Query: 6 LNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGK-HV 64
L P+ CA + + L + +E VG+P + +G K
Sbjct: 107 LRFPRTTTTAFCECAANGGMEWGGAQLEGCQYTQGMIHNMEYVGVPLSVLLAEAGVKPEG 166
Query: 65 EFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIG 124
+++ + + G S P+ + + DV+LA+ NGE L ++HGYP R+VVPG G
Sbjct: 167 KWLYAEGADASSNG---RSFPMEKVMD---DVMLAFFANGEALRKEHGYPARLVVPGWEG 220
Query: 125 ARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLED 184
VKW+ + I + + Y P W +MD + VI S
Sbjct: 221 NMWVKWVRRLGIYDKAVESREETSKYTDLMPDGRARKWTW-----VMD--AKSVITSPSP 273
Query: 185 VNVMKPGKAK--VSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDK 242
++ GK +SG A SG GR I RVD+S+DGGKNW A R +P
Sbjct: 274 QVPIRHGKGPLVISGLAWSGNGR-ITRVDVSLDGGKNWTTA-RITGQALPK--------- 322
Query: 243 WAWVFFEVIIDIPHSTQIV-AKAVDTAANVQP 273
A F + ID S ++ ++AVD VQP
Sbjct: 323 -ALTRFHLDIDWDGSEMLLQSRAVDETGYVQP 353
>pdb|1XDQ|A Chain A, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|B Chain B, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|C Chain C, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|D Chain D, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|E Chain E, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDY|A Chain A, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|B Chain B, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|C Chain C, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|D Chain D, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|E Chain E, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|F Chain F, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|G Chain G, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|H Chain H, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|I Chain I, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|J Chain J, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
Length = 298
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 36 WSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGG-----------PYKASI 84
W G L +L L + S K+V F +I ++ G PY +
Sbjct: 112 WIGFPLHKLLAL-------AEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGL 164
Query: 85 PLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEE 140
L +A +P L+ + G+ L +G P+R++VP G + +K + +I + E
Sbjct: 165 RLDEAMHPL--TLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRER 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,868,116
Number of Sequences: 62578
Number of extensions: 410789
Number of successful extensions: 1208
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1154
Number of HSP's gapped (non-prelim): 23
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)