Query 022157
Match_columns 302
No_of_seqs 185 out of 1679
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:28:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00177 sulfite oxidase; Prov 100.0 1.5E-85 3.2E-90 637.0 32.6 301 1-302 81-393 (393)
2 KOG0535 Sulfite oxidase, molyb 100.0 6.9E-86 1.5E-90 604.3 17.0 285 1-299 79-381 (381)
3 cd02111 eukary_SO_Moco molybdo 100.0 1.3E-79 2.9E-84 591.4 29.6 287 1-297 62-365 (365)
4 cd02112 eukary_NR_Moco molybdo 100.0 4.4E-79 9.6E-84 591.0 29.9 284 1-295 77-386 (386)
5 cd02114 bact_SorA_Moco sulfite 100.0 4.9E-77 1.1E-81 574.0 29.8 272 1-295 81-367 (367)
6 cd02110 SO_family_Moco_dimer S 100.0 2.5E-75 5.4E-80 553.3 28.3 272 1-295 34-317 (317)
7 PLN02252 nitrate reductase [NA 100.0 2.1E-75 4.6E-80 613.5 30.5 287 1-299 150-462 (888)
8 cd02113 bact_SoxC_Moco bacteri 100.0 1.7E-74 3.7E-79 547.8 28.6 261 1-298 47-324 (326)
9 cd02107 YedY_like_Moco YedY_li 100.0 3.2E-44 6.9E-49 322.1 14.5 156 1-181 44-214 (218)
10 cd02108 bact_SO_family_Moco ba 100.0 1.8E-39 3.9E-44 286.4 13.5 134 1-153 45-184 (185)
11 PF03404 Mo-co_dimer: Mo-co ox 100.0 4.4E-39 9.6E-44 269.4 13.1 125 168-298 2-131 (131)
12 PRK05363 TMAO/DMSO reductase; 100.0 7.6E-39 1.7E-43 300.2 12.9 136 1-152 118-260 (319)
13 cd02109 arch_bact_SO_family_Mo 100.0 2.3E-38 5E-43 278.4 13.8 130 1-154 43-172 (180)
14 PF00174 Oxidored_molyb: Oxido 100.0 3.2E-36 7E-41 262.1 11.0 133 1-147 31-169 (169)
15 COG2041 Sulfite oxidase and re 100.0 7.2E-34 1.6E-38 264.3 8.0 129 1-153 111-241 (271)
16 cd00321 SO_family_Moco Sulfite 100.0 2.7E-31 5.7E-36 228.5 12.9 123 1-139 33-156 (156)
17 COG3915 Uncharacterized protei 99.4 4.8E-13 1E-17 111.0 7.8 105 2-136 41-154 (155)
18 PF02012 BNR: BNR/Asp-box repe 96.0 0.005 1.1E-07 30.8 1.5 11 212-222 2-12 (12)
19 PF13754 Big_3_4: Bacterial Ig 91.8 0.2 4.2E-06 35.4 3.1 28 247-274 13-42 (54)
20 PF15418 DUF4625: Domain of un 91.4 1.8 3.8E-05 36.5 9.0 83 181-274 25-125 (132)
21 PF10648 Gmad2: Immunoglobulin 91.2 2.6 5.7E-05 32.8 9.3 78 178-269 4-85 (88)
22 cd00260 Sialidase Sialidases o 75.9 8.7 0.00019 36.4 6.9 53 176-228 142-194 (351)
23 PF12245 Big_3_2: Bacterial Ig 70.7 4.1 8.9E-05 29.3 2.5 27 247-273 11-40 (60)
24 TIGR02807 cas6_var CRISPR-asso 69.7 1.9 4E-05 38.6 0.6 20 96-115 4-23 (190)
25 cd02847 Chitobiase_C_term Chit 68.4 14 0.0003 28.3 5.1 35 185-225 16-50 (78)
26 PF03422 CBM_6: Carbohydrate b 65.3 52 0.0011 26.1 8.3 67 190-269 44-113 (125)
27 PF13750 Big_3_3: Bacterial Ig 61.1 11 0.00023 32.6 3.7 27 247-273 2-33 (158)
28 PF09559 Cas6: Cas6 Crispr; I 60.5 3.3 7.1E-05 37.2 0.4 18 98-115 3-20 (195)
29 PF07495 Y_Y_Y: Y_Y_Y domain; 60.1 13 0.00029 26.2 3.5 26 249-274 30-57 (66)
30 PF06594 HCBP_related: Haemoly 59.1 8.7 0.00019 25.6 2.2 32 192-225 12-43 (43)
31 KOG3063 Membrane coat complex 54.4 22 0.00049 33.0 4.7 54 94-148 226-289 (301)
32 PF13750 Big_3_3: Bacterial Ig 52.4 1E+02 0.0022 26.5 8.3 61 206-276 81-143 (158)
33 PF13088 BNR_2: BNR repeat-lik 50.5 1.2E+02 0.0026 27.2 9.1 37 190-227 118-154 (275)
34 PF05547 Peptidase_M6: Immune 49.3 45 0.00099 35.3 6.6 60 206-269 383-445 (645)
35 PF14870 PSII_BNR: Photosynthe 48.7 13 0.00028 35.5 2.4 20 209-228 254-273 (302)
36 COG4719 Uncharacterized protei 47.6 9.7 0.00021 32.9 1.2 65 188-257 96-165 (176)
37 KOG4274 Positive cofactor 2 (P 45.5 12 0.00027 38.7 1.7 55 79-140 634-688 (742)
38 cd00260 Sialidase Sialidases o 45.1 1E+02 0.0023 29.0 8.0 22 206-227 221-242 (351)
39 PF08770 SoxZ: Sulphur oxidati 43.7 86 0.0019 24.9 6.1 52 206-271 42-93 (100)
40 PF08381 BRX: Transcription fa 37.9 36 0.00078 24.8 2.7 24 189-214 11-35 (59)
41 PF10633 NPCBM_assoc: NPCBM-as 34.3 1.8E+02 0.0039 21.3 6.3 32 190-221 3-35 (78)
42 PF01357 Pollen_allerg_1: Poll 33.4 2.1E+02 0.0046 21.6 6.7 29 198-226 18-46 (82)
43 PF02494 HYR: HYR domain; Int 32.5 36 0.00078 25.3 2.2 18 255-272 56-73 (81)
44 PF09937 DUF2169: Uncharacteri 31.5 45 0.00097 31.7 3.1 37 182-218 50-87 (297)
45 PF11896 DUF3416: Domain of un 28.4 2.5E+02 0.0053 25.0 7.0 62 190-267 25-91 (187)
46 PF11797 DUF3324: Protein of u 27.7 1.4E+02 0.0029 25.0 5.1 34 171-204 84-119 (140)
47 PF03370 CBM_21: Putative phos 27.0 2E+02 0.0043 23.0 5.7 69 189-266 21-96 (113)
48 PRK10301 hypothetical protein; 22.7 3.9E+02 0.0085 21.9 6.9 78 180-273 33-116 (124)
49 PF04234 CopC: CopC domain; I 21.9 2.1E+02 0.0045 22.1 4.8 76 180-272 7-88 (97)
50 PF06832 BiPBP_C: Penicillin-B 21.2 80 0.0017 23.9 2.3 16 255-272 70-85 (89)
51 PF13715 DUF4480: Domain of un 20.7 3.5E+02 0.0076 19.8 6.5 53 194-266 1-54 (88)
52 PF13285 DUF4073: Domain of un 20.1 1.4E+02 0.0031 25.6 3.7 22 208-229 107-128 (158)
53 COG2933 Predicted SAM-dependen 20.1 2.1E+02 0.0045 27.4 5.1 68 37-129 123-190 (358)
No 1
>PLN00177 sulfite oxidase; Provisional
Probab=100.00 E-value=1.5e-85 Score=637.03 Aligned_cols=301 Identities=80% Similarity=1.312 Sum_probs=264.7
Q ss_pred ChhhhhhCCCeEEEEEEEecC--CCCcCc---cc-------eecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157 1 MCHLYLNNPKEYINLLLFCAV--RTNLSF---LY-------HFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS 68 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~~---~~-------ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~ 68 (302)
|+||+ +||+++++++|||+| |..|.. ++ +|+|++|+||+|+|||++||++..+.....++++|.|+|
T Consensus 81 l~dL~-~~p~~~~~~~l~C~GN~R~~~~~~~~~~G~~W~~gaig~a~WtGv~L~dvL~~aG~~~~~~~~~~~a~~v~f~g 159 (393)
T PLN00177 81 MKDIR-KLPKYNVTATLQCAGNRRTAMSKVRKVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTSITSSGGKHVEFVS 159 (393)
T ss_pred HHHHh-cCCCEEEEEEEEecCCCccceeecccccccCcccceeecCeEECcCHHHHHHHcCCCccccccCCCceEEEEEE
Confidence 57995 799999999999999 555542 11 799999999999999999999743222234789999999
Q ss_pred eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157 69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK 148 (302)
Q Consensus 69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~ 148 (302)
+|.+...+..+|.+||||++||++++++||||+|||||||++|||||||||||+||++|||||++|+|++++++||||++
T Consensus 160 ~d~~~~~~~~~y~~sipl~~a~~~~~d~lLAy~mNGepLp~~hG~PlRLvvPg~~G~~svKWL~~I~v~~~~~~g~w~~~ 239 (393)
T PLN00177 160 VDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEVLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECQGFFMQK 239 (393)
T ss_pred eccccccCCCCcEEeEEHHHhhCcccCeEEEEeeCCeECchhcCCceEEEeCCEeeeeceEEeeEEEEEecCCCCcceec
Confidence 98654444567999999999998756899999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCc
Q 022157 149 DYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228 (302)
Q Consensus 149 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~ 228 (302)
+|++++|..+++...|.+..+|++|+++|+|+.|.+++.++.|+++|+|||||||+++|+|||||+|||+||++|+|..+
T Consensus 240 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~i~~g~~~i~G~Awsggg~~I~rVEVS~DgG~tW~~A~l~~~ 319 (393)
T PLN00177 240 DYKMFPPSVNWDNINWSTRRPQMDFPVQSAICSLEDVNAIKPGKVTVAGYALSGGGRGIERVDISVDGGKTWVEASRYQK 319 (393)
T ss_pred ccccCCCCCCccccCccccCcceeecCCeEEecCCCCCcccCceEEEEEEEECCCCccEEEEEEEcCCCCCceeeeeccc
Confidence 99999888777766787788999999999999999999999999999999999888899999999999999999999765
Q ss_pred CCCcccccCCCCCceeeEEeEEEEECCCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEEeecCC
Q 022157 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGHSNM 302 (302)
Q Consensus 229 ~~~~~~~~~~~~~~~~W~~W~~~~~~~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v~~~~~ 302 (302)
++.+..+.....++|+|++|+++|+.+|+++|+|||||++||+||+....+||++||+||+||+|+|+|.||||
T Consensus 320 ~~~~~~~~~~~~~~~aW~~w~~~~~~~g~~~l~~RA~D~~G~~QP~~~~~~wN~~Gy~~n~~~rv~v~v~~~~~ 393 (393)
T PLN00177 320 PGVPYISDDISSDKWAWVLFEATVDVPQSTEIVAKAVDSAANVQPESVESIWNLRGILNTSWHRVQLRVGHSNM 393 (393)
T ss_pred cccccccccccCCccEEEEEEEEecCCCCeEEEEEEEcCCCCCCCCCCcCCcCCCCcccccEEEEEEEEeeccC
Confidence 32221112233468999999999988999999999999999999998767799999999999999999999998
No 2
>KOG0535 consensus Sulfite oxidase, molybdopterin-binding component [Energy production and conversion]
Probab=100.00 E-value=6.9e-86 Score=604.32 Aligned_cols=285 Identities=49% Similarity=0.866 Sum_probs=263.9
Q ss_pred ChhhhhhCCCeEEEEEEEecC--CCCcCccc----------eecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157 1 MCHLYLNNPKEYINLLLFCAV--RTNLSFLY----------HFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS 68 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~~~~----------ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~ 68 (302)
|+||+ ++|..+++++|+|+| |++|+++| ||+|+.|+|++|.|||+++|+... ..+++||.|+|
T Consensus 79 ~d~l~-s~~k~~vtatl~CaGNRR~emn~vK~vkGl~W~~~aisna~W~GarL~DvL~~~Gi~~~----~~~a~hV~Feg 153 (381)
T KOG0535|consen 79 LDDLK-SLPKYEVTATLQCAGNRRSEMNKVKKVKGLNWGSGAISNAVWGGARLCDVLRRAGIQSR----ETKALHVCFEG 153 (381)
T ss_pred HHHhh-hhccccceEEEEecCccHHHHhhHhhhccccccccccccceecCccHHHHHHHhCCCcc----cCcceEEEEec
Confidence 67884 678899999999999 77887765 999999999999999999999864 23678999999
Q ss_pred eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157 69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK 148 (302)
Q Consensus 69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~ 148 (302)
+|. ++.+..|.+||||++||+|+.|+||||+||||||+++||||||+||||..|+|+||||++|.|+++|+++|||++
T Consensus 154 ad~--d~tg~pYgaSI~l~~A~dp~~dVilAY~mNge~L~rDHGfPvRVIVPG~vGaR~VKWL~rIiV~~kESds~~~qk 231 (381)
T KOG0535|consen 154 ADD--DPTGTPYGASIPLEKAMDPEADVILAYEMNGEPLPRDHGFPVRVIVPGVVGARMVKWLKRIIVTPKESDSHWQQK 231 (381)
T ss_pred ccc--CCCCCcccccccHhhhcCcccceEEeeeecCccCCCCCCCceEEEecccccchhhhhhhheeeccccccchhhhc
Confidence 986 334668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeecC--CcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEcc
Q 022157 149 DYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKP--GKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRY 226 (302)
Q Consensus 149 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~--G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~ 226 (302)
||+.++|.+++++.+|...++|++|||+|+||.|.++..|++ |+|+|+|||||||||+|+|||||+|||.||..|+|+
T Consensus 232 Dyk~f~psvd~d~~~w~~~p~iqe~pVqsaIctp~~~~~V~~~~~~vtikGYA~SGGGr~i~RVdvslDgG~tW~v~eld 311 (381)
T KOG0535|consen 232 DYKGFSPSVDWDEVDWSSKPSIQELPVQSAICTPEDGLPVKAFDGPVTIKGYAWSGGGRKIIRVDVSLDGGETWNVAELD 311 (381)
T ss_pred ccccCCCccCccccccccCchhhhcCcceeecccCCCceeccCCCceEEEEEEEeCCCceEEEEEEEecCCceeeeeecc
Confidence 999999999999999999999999999999999999999998 789999999999999999999999999999999998
Q ss_pred CcCCCcccccCCCC-CceeeEEeEEEEECC---CccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEEee
Q 022157 227 QKTGIPYIADHMSS-DKWAWVFFEVIIDIP---HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGH 299 (302)
Q Consensus 227 ~~~~~~~~~~~~~~-~~~~W~~W~~~~~~~---g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v~~ 299 (302)
+.+.+ .+ +.|||++|+.+++.. .+..|.|||+|++.|+|||....|||++|.+||+||||++.|.+
T Consensus 312 qee~~-------~~~~~w~W~lw~a~v~V~~~~~~~~I~akAvD~a~NvQPe~~~~IWNlrGvl~nawhRV~~~v~~ 381 (381)
T KOG0535|consen 312 QEEKP-------DKYKFWAWCLWSAEVPVSDGQKEKNIIAKAVDSAYNVQPETVESIWNLRGVLNNAWHRVKVNVCK 381 (381)
T ss_pred ccccC-------CccceEEEEEEEecccccccchhhhhHHHhhhhhhcCCcchhhhhhhHHHHhhhheeEEEeeecC
Confidence 87652 22 589999999999983 35689999999999999999999999999999999999999864
No 3
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=1.3e-79 Score=591.44 Aligned_cols=287 Identities=52% Similarity=0.876 Sum_probs=250.7
Q ss_pred ChhhhhhCCCeEEEEEEEecC--CCCcCc---c-------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157 1 MCHLYLNNPKEYINLLLFCAV--RTNLSF---L-------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS 68 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~~---~-------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~ 68 (302)
|+||++.||+++++++|+|+| |..|.. + .+|+|++|+||+|+|||++||+++.. ..++++|.|+|
T Consensus 62 l~dL~~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aGv~~~~---~~~a~~V~~~~ 138 (365)
T cd02111 62 LEDLKSLFPKHEVTATLQCAGNRRSEMTKVKKVKGLQWGDGAISNAEWGGARLRDVLLDAGIPEDD---SQGGLHVHFEG 138 (365)
T ss_pred HHHHHhhCCcEEEEEEEEecCCCchhccccccccCCCccCCcEEeeEEECcCHHHHHHHhCCCCcc---CCCceEEEEEe
Confidence 579965569999999999999 555532 1 17899999999999999999998621 01489999999
Q ss_pred eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157 69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK 148 (302)
Q Consensus 69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~ 148 (302)
+|... +..+|.+||||+++|++++|+||||+|||||||++|||||||||||+||++|||||++|+|++++++||||++
T Consensus 139 ~d~~~--~~~~y~~sipl~~a~~p~~~~lLA~~mNGepL~~~hG~PlRLvvPg~~G~~~vKWl~~I~v~~~~~~g~w~~~ 216 (365)
T cd02111 139 LDVDP--TGTPYGASIPLSKALDPEADVLLAYEMNGTPLPRDHGFPLRVVVPGVVGARSVKWLDRIVVSDEESDSHWQQN 216 (365)
T ss_pred cCCCC--CCCCeeeeeEHHHhhCcCCCeEEEehhcCCCCccccCccEEEEeCCeeEEEEEEEeeEEEEeccCCCCcceec
Confidence 98533 2347999999999999655899999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCe---ecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEc
Q 022157 149 DYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNV---MKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASR 225 (302)
Q Consensus 149 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~---v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L 225 (302)
+|++++|..+++...|.+..+|++|+++|+|+.|.+++. +..|.++|+|||||||+++|+|||||+|||+||++|+|
T Consensus 217 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~~i~G~A~sgg~~~I~rVEVS~DgG~tW~~A~l 296 (365)
T cd02111 217 DYKGFSPSVDWDNVDFSKAPAIQEMPVQSAICSPSVGAPVVTVPPGKITVKGYAWSGGGRKIVRVDVSLDGGRTWKVAEL 296 (365)
T ss_pred ceeecCCCCCccccCccccCceeeeccCEEEecCCCCCeeeccCCceEEEEEEEECCCCCcEEEEEEECCCCCcceeCCc
Confidence 999988777666666777789999999999999999994 55679999999999888899999999999999999999
Q ss_pred cCcCCCcccccCCCCCceeeEEeEEEEEC-C-CccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEE
Q 022157 226 YQKTGIPYIADHMSSDKWAWVFFEVIIDI-P-HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 297 (302)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~W~~W~~~~~~-~-g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v 297 (302)
..+... ..++++|||++|+++|++ + |+++|+|||||++||+||+.....||++||++|+||+|+|.+
T Consensus 297 ~~~~~~-----~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~QP~~~~~~wn~~Gy~~n~~~~v~v~~ 365 (365)
T cd02111 297 EQEENV-----WPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNVQPETVEPIWNLRGVLNNAWHRVKVVV 365 (365)
T ss_pred CCCCCc-----cccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCcCCCCCCCCCCccceecceEEEEEeeC
Confidence 877541 124457999999999998 4 589999999999999999987667999999999999999974
No 4
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=4.4e-79 Score=590.96 Aligned_cols=284 Identities=32% Similarity=0.603 Sum_probs=242.5
Q ss_pred ChhhhhhCCCeEEEEEEEecC--CCCcC---cc-------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157 1 MCHLYLNNPKEYINLLLFCAV--RTNLS---FL-------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS 68 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~---~~-------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~ 68 (302)
|+||++.||+++++++|||+| |..|. ++ .+|+|++|+||+|+|||++||+++.+ .++++|.|+|
T Consensus 77 l~dL~~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~WtGV~L~dlLe~aG~~~~~----~~a~~V~~~g 152 (386)
T cd02112 77 MDELVAMFPSVTFPVTLVCAGNRRKEQNMVKKTIGFNWGAAGTSTSLWTGVRLSDLLDRCGPKSPK----GGARHVCFEG 152 (386)
T ss_pred HHHHHhcCCceEEEEEEEcCCCCcccccccccccCcCcccccceEeEEEeeEHHHHHHHcCCCCcc----CCceEEEEEc
Confidence 579965569999999999999 43332 11 16899999999999999999998621 1589999999
Q ss_pred eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157 69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK 148 (302)
Q Consensus 69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~ 148 (302)
+|.........|.+||||+++|++++|+||||+|||||||++|||||||||||+||++|||||++|+|+++++++|||+.
T Consensus 153 ~D~~~~~~~~~y~~slpl~~al~~~~dvlLAy~mNGepLp~~hG~PlRlvVPg~~G~~~vKWl~~I~v~~~~~~~~~~~~ 232 (386)
T cd02112 153 ADDLLPGPNGKYGTSITLSWAMDPSKDVMLAYKQNGELLHPDHGFPVRLIIPGQIGGRMVKWLKRIVVSDRESQNHYHFH 232 (386)
T ss_pred cCcccccCCCCcEeeeEHHHhhCcCCCeEEEEeeCCeECCccCCcEEEEEeCCccceeeeeEeEEEEEEecCCCCceeec
Confidence 98533333457999999999998756899999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCCCC---C-cCC-CCCccceeceEEEEeecCCCee-----c-CCcEEEEEEEEeCCCCCeEEEEEEcCCC
Q 022157 149 DYKMFPPSVNWDNI---N-WKS-RRPLMDFPVQCVICSLEDVNVM-----K-PGKAKVSGYAVSGGGRGIERVDISVDGG 217 (302)
Q Consensus 149 ~Y~~~~~~~~~~~~---~-~~~-~~~i~~~~v~S~I~~P~~~~~v-----~-~G~v~i~G~A~sggg~~I~rVEVS~DgG 217 (302)
+|+++++..+++.. . |.+ ..+|++|+|+|+|+.|.+++++ + .|+++|+||||||+|++|+|||||+|||
T Consensus 233 ~y~~~~~~~~~~~~~~~~~w~~~~~~i~~~~v~S~I~~P~~~~~v~~~~~~~~~~~~i~G~A~sg~g~~I~rVeVS~DgG 312 (386)
T cd02112 233 DNRVLPSHVDAELANEEGWWYKPEYIINDLNVNSAITTPAHDEVLPLNGLTTAETYTMKGYAYAGGGRRVTRVEVSLDDG 312 (386)
T ss_pred ccccCCcccCccccccccccccCCceeeeeccCeEEeccCCCCEeeccccCCCCeEEEEEEEEcCCCCcEEEEEEEcCCC
Confidence 99998766544322 2 333 3579999999999999999998 3 4589999999998878999999999999
Q ss_pred CCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC---CCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEE
Q 022157 218 KNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI---PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQ 294 (302)
Q Consensus 218 ~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~---~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~ 294 (302)
+||++|+|..+... .+.+++|+|++|+++|++ +|+++|+|||||++||+||+... ||++||+||+||+|+
T Consensus 313 ~tW~~A~L~~~~~~-----~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G~~QP~~~~--wN~~Gy~~n~~~~v~ 385 (386)
T cd02112 313 KSWKLASIDYPEDP-----TKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESMNTQPRDMT--WNVMGMMNNCWFRVK 385 (386)
T ss_pred CCceeCCCCCCCCc-----cccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCCCcCCCCCC--ccccceeeceEEEEc
Confidence 99999999766421 122348999999999976 48999999999999999999765 999999999999998
Q ss_pred E
Q 022157 295 V 295 (302)
Q Consensus 295 v 295 (302)
|
T Consensus 386 v 386 (386)
T cd02112 386 I 386 (386)
T ss_pred C
Confidence 5
No 5
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=4.9e-77 Score=574.00 Aligned_cols=272 Identities=28% Similarity=0.502 Sum_probs=235.9
Q ss_pred ChhhhhhCCCeEEEEEEEecC--CCCcC-ccc-------eecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEec
Q 022157 1 MCHLYLNNPKEYINLLLFCAV--RTNLS-FLY-------HFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSID 70 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~-~~~-------ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D 70 (302)
|+||++.||+++++++|+|+| |..+. ++. +|++++|+||+|+|||++||+++ ++++|.|+|+|
T Consensus 81 l~dL~~~~p~~~~~~~l~C~gN~r~~~~~~~~G~~W~~G~i~~a~WtGV~L~dlL~~aG~~~-------~a~~V~f~g~D 153 (367)
T cd02114 81 LAELKRIEPRFEVVAVNQCSGNSRGFFQPRVQGAQLANGAMGNARWAGVPLKAVLAKAGVQD-------GARQVAFRGLD 153 (367)
T ss_pred HHHHhhcCCceEEEEEEEECCCCcccccccccCCCcccceEEeeEEEeeEHHHHHHHcCCCC-------CCcEEEEEecC
Confidence 579965569999999999999 33331 111 78999999999999999999986 68999999999
Q ss_pred cccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeecC
Q 022157 71 KCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDY 150 (302)
Q Consensus 71 ~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~Y 150 (302)
.........|.+||||++++++ ++||||+|||||||++|||||||||||+||++|||||++|+|+++++++|||+++|
T Consensus 154 ~~~~~~~~~y~~sipl~~a~~~--~~lLAy~mNGepL~~~hG~PlRlvvPg~~g~~~vKwl~~I~v~~~~~~g~w~~~~Y 231 (367)
T cd02114 154 QPVLDVTPDFVKSLDIDHALDG--EVMLAWEMNGEPLPVLNGYPLRLVVPGFYATYWVKHLSHITVLDKEFDGFWASQAY 231 (367)
T ss_pred CccccCCCCeEEeeeHHHhcCC--CeEEEEeeCCeECCHHhCCceEEEecCEeeeeeeEeeeEEEEEecCCCCceeeccc
Confidence 5333233469999999999985 89999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCC--CCcCCCCCccceeceEEEEeecCCCeecCC-cEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccC
Q 022157 151 KMFPPSVNWDN--INWKSRRPLMDFPVQCVICSLEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQ 227 (302)
Q Consensus 151 ~~~~~~~~~~~--~~~~~~~~i~~~~v~S~I~~P~~~~~v~~G-~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~ 227 (302)
+++++...... ..+.+..+|++|+++|+|+.|.+++.+++| .++|+||||+| +++|+|||||+|||+||++|+|.+
T Consensus 232 ~~~~~~~~~~~~g~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~i~G~A~~G-~~~I~rVEVS~DgG~tW~~A~l~~ 310 (367)
T cd02114 232 RIPDNADAGVEPGTAPDRTAPINRFKVRSFITSLENGAIVAPAGELALRGIAFDG-GSGIRRVDVSADGGDSWTQATLGP 310 (367)
T ss_pred ccCCCcccccCCcccccccceeeeeecceEEecCCCCCEecCCCeEEEEEEEEcC-CCCEEEEEEEeCCCCcceEeEeCC
Confidence 98644211111 113345689999999999999999999865 89999999997 579999999999999999999987
Q ss_pred cCCCcccccCCCCCceeeEEeEEEEEC--CCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEE
Q 022157 228 KTGIPYIADHMSSDKWAWVFFEVIIDI--PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQV 295 (302)
Q Consensus 228 ~~~~~~~~~~~~~~~~~W~~W~~~~~~--~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v 295 (302)
+.+ +|+|++|+++|++ +|+++|+|||||++||+||+... ||++||+||+||+|+|
T Consensus 311 ~~~-----------~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~QP~~~~--wn~~Gy~~n~~~~v~v 367 (367)
T cd02114 311 DLG-----------RFSFRGWKLTLDGVKKGPLTLMVRATNNDGQTQPLRAP--WNPGGYMRNVVERTRI 367 (367)
T ss_pred CCC-----------CcEEEEEEEEEECCCCCcEEEEEEEEcCCCCCCCCCCc--cCcccEecceEEEEeC
Confidence 654 8999999999987 69999999999999999998655 9999999999999986
No 6
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=100.00 E-value=2.5e-75 Score=553.27 Aligned_cols=272 Identities=43% Similarity=0.705 Sum_probs=239.9
Q ss_pred ChhhhhhCCCeEEEEEEEecC--CCCcCcc--------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEec
Q 022157 1 MCHLYLNNPKEYINLLLFCAV--RTNLSFL--------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSID 70 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~~~--------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D 70 (302)
|+|| ++||+++++++|+|++ |..|.+. .+|++++|+||+|+|||++||+++ ++++|.|+|+|
T Consensus 34 l~dL-~~lp~~~~~~~l~C~gn~r~~~~~~~~g~~W~~g~i~~~~w~GV~L~dlL~~ag~~~-------~a~~V~~~~~D 105 (317)
T cd02110 34 LDDL-KRLPSVEVVATLECSGNGRGGFIPVRSGAQWGHGAVGNARWTGVPLKDLLEEAGVKP-------GAKHVLFEGAD 105 (317)
T ss_pred HHHH-hhCCCeeEEEEEEcCCCCcccccccccCCccccCceeecEEECcCHHHHHHHhCCCC-------CCcEEEEEccC
Confidence 4788 4799999999999999 3433211 178999999999999999999986 58999999998
Q ss_pred cccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeecC
Q 022157 71 KCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDY 150 (302)
Q Consensus 71 ~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~Y 150 (302)
........+|.++|||++++++ ++||||+||||||+++||||||||+||+||++|||||++|+|++++++||||+++|
T Consensus 106 ~~~~~~~~~Y~~sipl~~~~~~--~~iLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~I~v~~~~~~g~w~~~~Y 183 (317)
T cd02110 106 VPPGEKAADYTRSVPLSKALDD--DALLAYEMNGEPLPPDHGYPLRLVVPGWYGARSVKWLRRIEVTDQPSDGYWQTRDY 183 (317)
T ss_pred cccccCCCCeEEEEEHHHhcCC--CcEEEehhcCccCCHHhCCceEEEcCCceeeEeeEEeeEEEEEecCCCCceEcccc
Confidence 6544445689999999999984 89999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeecC-CcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCcC
Q 022157 151 KMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKP-GKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKT 229 (302)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~-G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~~ 229 (302)
+++++..+. ..+.+..++++|+++|+|+.|.++..+.. +.++|+|+||+| +++|+|||||+|||+||++|+|.++.
T Consensus 184 ~~~~~~~~~--~~~~~~~~~~~~~~~s~I~~p~~~~~~~~~~~~~i~G~A~~g-~~~I~rVEvS~DgG~tW~~A~l~~~~ 260 (317)
T cd02110 184 TVPPPDVDA--VGGKARRPIGEMPVKSVITSPSPGAELVSGGRVEIGGVAWSG-GRGIRRVEVSLDGGRTWQEARLEGPL 260 (317)
T ss_pred ccCCCcccc--cCCCccceeEEEccCEEEeccCCCCEecCCCeEEEEEEEEcC-CCCEEEEEEEeCCCCcceEeEccCCc
Confidence 998765443 23445678999999999999999966665 489999999996 57999999999999999999998775
Q ss_pred CCcccccCCCCCceeeEEeEEEEEC-CCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEE
Q 022157 230 GIPYIADHMSSDKWAWVFFEVIIDI-PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQV 295 (302)
Q Consensus 230 ~~~~~~~~~~~~~~~W~~W~~~~~~-~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v 295 (302)
. ++|+|++|+++|++ +|+|+|+|||+|++||+||+.....||++||++|+||+|+|
T Consensus 261 ~----------~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~QP~~~~~~~n~~g~~~n~~~~v~v 317 (317)
T cd02110 261 A----------GPRAWRQWELDWDLPPGEYELVARATDSTGNVQPERAEWNWNPGGYGNNHWHRVQV 317 (317)
T ss_pred C----------CCCEEEEEEEEEEcCCCcEEEEEEEECCCCCcCCCcccccccCCCceeeeEEEEEC
Confidence 2 28999999999998 79999999999999999999877445579999999999986
No 7
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=2.1e-75 Score=613.50 Aligned_cols=287 Identities=32% Similarity=0.640 Sum_probs=249.7
Q ss_pred ChhhhhhCCCeEEEEEEEecC--CCCcCccc----------eecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157 1 MCHLYLNNPKEYINLLLFCAV--RTNLSFLY----------HFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS 68 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~~~~----------ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~ 68 (302)
|+||+ +||+++++++|+|+| |.+++.++ +|||+.|+||+|+|||++||++.. ..++++|.|+|
T Consensus 150 l~dL~-~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~Wg~gavs~~~W~GV~L~dlL~~ag~~~~----~~~a~~V~f~g 224 (888)
T PLN02252 150 MDELV-RFPARELPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVRLRDVLRRCGVMSR----KGGALNVCFEG 224 (888)
T ss_pred HHHHh-hCCCeeEEEEEEeCCCCcccccccccccccCccccccccceEeceEHHHHHHHcCCCCC----CCCceEEEEEc
Confidence 58995 599999999999999 55543211 799999999999999999999842 12689999999
Q ss_pred eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157 69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK 148 (302)
Q Consensus 69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~ 148 (302)
+|....+.+..|.+||||++||++.+|+||||+|||||||++|||||||||||+||++|||||++|+|+++++++||+.+
T Consensus 225 ~d~~~~~~~~~y~~sipl~~a~d~~~dvlLAy~mNGepL~~~hG~PvRlvvPG~~G~~~vKWl~~I~v~~~~~~~~~~~~ 304 (888)
T PLN02252 225 AEDLPGGGGSKYGTSITLERAMDPARDVILAYMQNGEPLTPDHGFPVRLIIPGFIGGRMVKWLKRIIVTTAESDNYYHYR 304 (888)
T ss_pred ccccccCCCCCceeeeeHHHHhCcCCCeEEEEeeCCeECCccCCceEEEeCCCceeeeeeeEeeEEEEEeCCCCCceeec
Confidence 98644444457999999999999766899999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCCCC---CcCCC--CCccceeceEEEEeecCCCeec------CCcEEEEEEEEeCCCCCeEEEEEEcCCC
Q 022157 149 DYKMFPPSVNWDNI---NWKSR--RPLMDFPVQCVICSLEDVNVMK------PGKAKVSGYAVSGGGRGIERVDISVDGG 217 (302)
Q Consensus 149 ~Y~~~~~~~~~~~~---~~~~~--~~i~~~~v~S~I~~P~~~~~v~------~G~v~i~G~A~sggg~~I~rVEVS~DgG 217 (302)
+|+++|+.++.+.. .|... .+|++|++||+|+.|.+++.|. .++++|+||||||||++|+|||||+|||
T Consensus 305 d~r~~p~~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~~~~~i~G~A~sggg~~I~rVEVS~DgG 384 (888)
T PLN02252 305 DNRVLPSHVDAELANAEGWWYKPEYIINELNINSVITTPAHDEILPINASTTQRPYTMKGYAYSGGGRKVTRVEVSLDGG 384 (888)
T ss_pred ccccCCCcccccccccccccccCCccceeeccceEEecCCCCCEecccccCCCceEEEEEEEECCCCCceEEEEEEcCCC
Confidence 99998877654421 34432 3799999999999999999997 3479999999999899999999999999
Q ss_pred CCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC---CCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEE
Q 022157 218 KNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI---PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQ 294 (302)
Q Consensus 218 ~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~---~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~ 294 (302)
+||+.|+|..++.+ ..+++.|||++|+++|++ +|.++|+|||+|++||+||+... ||++||+||+||+|+
T Consensus 385 ~tW~~a~l~~~~~~-----~~~g~~~~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~--wN~~G~~nN~~~rv~ 457 (888)
T PLN02252 385 ETWRLCDLDHPEKP-----TKYGKYWCWCFWSLDVEVLDLLGAKEIAVRAWDESMNTQPEKLI--WNLMGMMNNCWFRVK 457 (888)
T ss_pred CcceeCccCCCCCc-----cccCCccEEEEEEEeEecccCCCceEEEEEEEcCCCCcCCCCCc--cCcCceEEeeEEEEE
Confidence 99999999877531 234456899999999975 68999999999999999998755 999999999999999
Q ss_pred EEEee
Q 022157 295 VRVGH 299 (302)
Q Consensus 295 v~v~~ 299 (302)
|+|.+
T Consensus 458 v~v~~ 462 (888)
T PLN02252 458 VNVCK 462 (888)
T ss_pred EEEee
Confidence 99954
No 8
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=1.7e-74 Score=547.78 Aligned_cols=261 Identities=30% Similarity=0.421 Sum_probs=231.8
Q ss_pred ChhhhhhCCCeEEEEEEEecC--CCCcCcc---------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEe
Q 022157 1 MCHLYLNNPKEYINLLLFCAV--RTNLSFL---------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSI 69 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~~~---------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~ 69 (302)
|+||+ +||+++++++|+|+| |..+... .+|+|++|+||+|+|||++||+++ ++++|.|+|+
T Consensus 47 l~dL~-~~p~~~~~~~l~C~gn~r~~~~~~~~~G~~W~~g~i~~a~W~GV~L~dlL~~ag~~~-------~a~~V~~~g~ 118 (326)
T cd02113 47 MDDLK-RFPSVSRIYFLECSGNGGTGWRGAPLPTAQYTHGMLSCSEWTGVPLSTLLEEAGVKP-------GAKWLLAEGA 118 (326)
T ss_pred HHHHh-cCCCEEEEEEEEecCCCcccccccccccccccccceeEEEEEeeEHHHHHHhcCCCC-------CceEEEEEec
Confidence 57895 799999999999998 3444321 189999999999999999999986 6899999999
Q ss_pred ccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeec
Q 022157 70 DKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD 149 (302)
Q Consensus 70 D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~ 149 (302)
| +..|.+||||++++ + ++||||+|||||||.+|||||||||||+||++|||||++|+|++++++++||+.+
T Consensus 119 D------~~~y~~sipl~~a~-~--~~lLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~ 189 (326)
T cd02113 119 D------AAAMTRSIPLEKAL-D--DALVAYAQNGEALRPENGYPLRLVVPGWEGNTNVKWLRRIEVGDQPWMTREETSK 189 (326)
T ss_pred C------CCceeEEeeHHHhC-c--CcEEEEeeCCeECChhhCceEEEEeCCccceeCceEeeEEEEEecccCCchhhcc
Confidence 8 23599999999999 3 8999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeec-CCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCc
Q 022157 150 YKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMK-PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228 (302)
Q Consensus 150 Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~-~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~ 228 (302)
|+..++... ...+++.|+++|+|+.|.+++.++ .|+++|+||||||++ +|+|||||+|||+||++|+|..+
T Consensus 190 Y~~~~~~~~-------~~~~~~~~~v~S~I~~P~~~~~~~~~~~~~i~G~A~sG~~-~I~rVEVS~DgG~tW~~A~l~~~ 261 (326)
T cd02113 190 YTDLLPDGR-------ARQFSFVMEAKSVITSPSGGQRLREPGFHEISGLAWSGRG-RIRRVDVSFDGGRTWQDARLEGP 261 (326)
T ss_pred ccccCCCCc-------ccccceEecccEEEecCCCCCEecCCCeEEEEEEEECCCC-CEEEEEEEcCCCCCceECccCCC
Confidence 998654321 123667899999999999999996 568999999999754 79999999999999999999888
Q ss_pred CCCcccccCCCCCceeeEEeEEEEEC-CCccEEEEEEEeCCCCCCCCCccccccccc----CCCCceEEEEEEEe
Q 022157 229 TGIPYIADHMSSDKWAWVFFEVIIDI-PHSTQIVAKAVDTAANVQPESVETIWNLRG----VLNTSWHRVQVRVG 298 (302)
Q Consensus 229 ~~~~~~~~~~~~~~~~W~~W~~~~~~-~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G----~~~n~~h~v~v~v~ 298 (302)
.. +|+|++|++.|.+ .|.++|+|||||++||+||+.. .+||.+| |++|++|+++|.|.
T Consensus 262 ~~-----------~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~QP~~~-~~~n~~g~n~gy~~n~~~~~~v~~~ 324 (326)
T cd02113 262 VL-----------PKALTRFRLPWKWDGRPAVLQSRATDETGYVQPTRA-ELRAVRGTNSIYHNNAIQSWRVDED 324 (326)
T ss_pred CC-----------CCceEEEeEEEEcCCCeEEEEEEEEcCCCCCCCCCc-ccchhcccccceecceEEEEEEEcC
Confidence 65 8999999999998 5679999999999999999864 4567666 99999999999985
No 9
>cd02107 YedY_like_Moco YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY, which is likely membrane-anchored by a heme-containing trans-membrane subunit YedZ. Preliminary results indicate that YedY may represent a new type of membrane-associated bacterial reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=3.2e-44 Score=322.12 Aligned_cols=156 Identities=26% Similarity=0.329 Sum_probs=134.4
Q ss_pred ChhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEecccc---cc--
Q 022157 1 MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCK---EE-- 75 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~---~~-- 75 (302)
|+||+++||+++++++|||+++|++ +++|+||+|++||++||+++ ++++|.|+|+|... +.
T Consensus 44 l~eL~~~lP~~~~~~~l~Cv~gWs~-------~a~W~GV~L~dlLe~ag~~~-------~A~~V~f~~~d~~~~~~g~~g 109 (218)
T cd02107 44 IDDLMKTFPLEERIYRFRCVEGWSM-------VVPWVGFPLAALLARAEPTS-------EAKYVRFTTLLDKEQMPGQSG 109 (218)
T ss_pred HHHHHhcCCCeEEEEEEEEeCCCcc-------eeEEEeeEHHHHHHHcCCCC-------CCCEEEEEecCccccccCCcc
Confidence 5789644999999999999998863 79999999999999999987 68999999997311 11
Q ss_pred ----CCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeec--
Q 022157 76 ----NGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD-- 149 (302)
Q Consensus 76 ----~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~-- 149 (302)
...+|.++|||++||++ ++||||+|||||||++|||||||||||+||+||||||++|+|++++++||||+++
T Consensus 110 ~~~~~~~~Y~~slpl~~Al~~--~~LLAy~mNGepLp~~HG~PlRLVVPg~yG~ksvKWL~~Iev~~~~~~GyWe~~~~~ 187 (218)
T cd02107 110 LFGVLPWPYVEGLRLDEAMHP--LTLLAVGLYGEALPKQNGAPIRLVVPWKYGFKSIKSIVKIEFTKEQPPTTWNLAAPD 187 (218)
T ss_pred ccccccCCcccceeHHHhhCc--ccEEEeeeCCcCCcHhhCCceEEEeCCeeeeEcceeeeEEEEEeCCCCCcccccCcc
Confidence 12259999999999996 7999999999999999999999999999999999999999999999999999995
Q ss_pred ----CccCCCCCCCCCCCcCCCCCccceeceEEEEe
Q 022157 150 ----YKMFPPSVNWDNINWKSRRPLMDFPVQCVICS 181 (302)
Q Consensus 150 ----Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~ 181 (302)
|+..++..+ .|+++|.++|.|..
T Consensus 188 ~~~~y~~~~~~~~---------~~~~~~~~~~~i~~ 214 (218)
T cd02107 188 EYGFYANVNPSVD---------HPRWSQATERRIGE 214 (218)
T ss_pred cccccccCCCCCC---------CCccccceeeeecc
Confidence 444443321 57899999999973
No 10
>cd02108 bact_SO_family_Moco bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.
Probab=100.00 E-value=1.8e-39 Score=286.38 Aligned_cols=134 Identities=32% Similarity=0.546 Sum_probs=121.9
Q ss_pred ChhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccccCCCCe
Q 022157 1 MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPY 80 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~~~~~~Y 80 (302)
++|| ++||+++++++++|+++|+ ..++|+||+|+|||++||+++ ++++|.|+|+|.. .+..+|
T Consensus 45 l~dL-~~lp~~~~~~~~~Cv~gws-------~~~~w~Gv~L~dlL~~ag~~~-------~a~~V~~~a~d~~--~~~~~Y 107 (185)
T cd02108 45 LEEL-RALPQRTQITRHICVEGWS-------AIGKWGGVPLRTILELVGPLP-------EAKYVVFKCADDF--AGGDRY 107 (185)
T ss_pred HHHH-hCCCCEEEEEEEEEcCCCc-------eEEEEEEEEHHHHHHHhCCCC-------CCcEEEEEecCcC--CCCCCe
Confidence 4788 4899999999999999765 257999999999999999986 5899999999743 223489
Q ss_pred EEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccC------CceeeecCccC
Q 022157 81 KASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQ------GFFMQKDYKMF 153 (302)
Q Consensus 81 ~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~------g~w~~~~Y~~~ 153 (302)
.++|||++++++ ++||||+||||||+.+|||||||||||+||+||||||++|+|++++.+ ||||++||+.+
T Consensus 108 ~~sipl~~~~~~--~~iLA~~~nGepL~~~hG~PlRLvvPg~~G~k~vKwl~~I~~~~~~~~~~~~~~g~We~~gy~~~ 184 (185)
T cd02108 108 YESIDMASALHP--QTLLAYEMNGQPLPIKNGAPLRLRVETQLGYKQAKWVTEIELVNDLPGIGGGKGGYWEDQGYNWF 184 (185)
T ss_pred EEEEEHHHhcCC--CcEEEEeeCCeECChhcCceEEEEcCCcccccCceEccEEEEEeccCccccCCCCccccCCcccc
Confidence 999999999986 799999999999999999999999999999999999999999999999 99999999875
No 11
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=100.00 E-value=4.4e-39 Score=269.44 Aligned_cols=125 Identities=42% Similarity=0.756 Sum_probs=94.9
Q ss_pred CCccceeceEEEEeecCCCeecCC--cEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceee
Q 022157 168 RPLMDFPVQCVICSLEDVNVMKPG--KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 245 (302)
Q Consensus 168 ~~i~~~~v~S~I~~P~~~~~v~~G--~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W 245 (302)
.+|++|+|||+|+.|.+++.|+.| +++|+||||+|++++|+|||||+|||+||++|+|..+..+... ...+|+|
T Consensus 2 ~~i~~~~v~S~I~~P~~~~~v~~~~~~v~i~G~A~~g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~----g~~~~aW 77 (131)
T PF03404_consen 2 YPINEMPVNSVITSPSDGETVKAGDGTVTIRGYAWSGGGRGIARVEVSTDGGKTWQEATLDGPESPPRY----GEARWAW 77 (131)
T ss_dssp CB--B---EEEEEESBTTEEEESESEEEEEEEEEE-STT--EEEEEEESSTTSSEEE-EEESTSCCCHH----TS-TTS-
T ss_pred cchhhcCCCEEEEecCCCCEEccCCcEEEEEEEEEeCCCcceEEEEEEeCCCCCcEEeEeccCCCcccc----cccCccc
Confidence 478999999999999999999987 8999999999988899999999999999999999988541000 0127999
Q ss_pred EEeEEEEEC-C--CccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEEe
Q 022157 246 VFFEVIIDI-P--HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVG 298 (302)
Q Consensus 246 ~~W~~~~~~-~--g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v~ 298 (302)
++|+|+|++ + |.++|+|||+|++|++||+... ||++||++|+||+|+|+|.
T Consensus 78 ~~W~~~~~~~~~~G~~~i~~RA~D~~G~~QP~~~~--wN~~G~~~n~~~~v~v~v~ 131 (131)
T PF03404_consen 78 RLWEYDWPPPSLPGEYTIMVRATDESGNVQPEEPI--WNPRGYMNNGWHRVKVTVE 131 (131)
T ss_dssp EEEEEEEEECSHCCEEEEEEEEEETTS-B--SCHH--CHTT-SS--SSEEEEEEE-
T ss_pred ceeeeccCcCccccceEEEEEEeecccccCCCccc--ccccCceeccEEEEEEEEC
Confidence 999999998 4 8899999999999999999554 9999999999999999984
No 12
>PRK05363 TMAO/DMSO reductase; Reviewed
Probab=100.00 E-value=7.6e-39 Score=300.19 Aligned_cols=136 Identities=26% Similarity=0.308 Sum_probs=122.8
Q ss_pred ChhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEecccc---cc--
Q 022157 1 MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCK---EE-- 75 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~---~~-- 75 (302)
++||+++||+++++++|+|+++|++ ++.|+||+|+|||+++|+++ +|++|.|++.|... ++
T Consensus 118 ldDL~~~~P~~eri~~l~CVegWs~-------~~~W~GvpL~dLLe~agp~~-------~AkyV~f~s~~d~~~~~g~~~ 183 (319)
T PRK05363 118 IDDLLKLFPLEERIYRLRCVEAWSM-------VIPWIGFPLAKLLKRVEPTS-------NAKYVAFETLYDPEQMPGQRS 183 (319)
T ss_pred HHHHHhcCCCeEEEEEEEEcCCCce-------eeEEEeeEHHHHHHHcCCCC-------CCcEEEEEecCccccccCCcc
Confidence 5799766999999999999998875 79999999999999999987 69999999985321 21
Q ss_pred --CCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeecCcc
Q 022157 76 --NGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152 (302)
Q Consensus 76 --~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~Y~~ 152 (302)
.+.+|.++|||++||++ ++||||+|||||||++|||||||||||+||+||||||++|+|++++.+||||+.+|+-
T Consensus 184 ~~~~~pY~~~LpL~eAm~p--~tlLA~~mnGepLp~qhG~PlRLVVPg~YG~KsvKWI~~Ie~~~~~~~g~We~~~~~e 260 (319)
T PRK05363 184 RFLDWPYVEGLRLDEAMHP--LTLLAVGLYGKTLPNQNGAPIRLVVPWKYGFKSIKSIVRIRLTEEQPPTTWNLLAPNE 260 (319)
T ss_pred cccCCCeeccccHHHHhCc--cceehhhhCCcCCchhhCCceEEEeCCceeeecceeeeEEEEEeCCCCCchhccCccc
Confidence 12269999999999997 7999999999999999999999999999999999999999999999999999998875
No 13
>cd02109 arch_bact_SO_family_Moco bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.
Probab=100.00 E-value=2.3e-38 Score=278.37 Aligned_cols=130 Identities=34% Similarity=0.518 Sum_probs=121.6
Q ss_pred ChhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccccCCCCe
Q 022157 1 MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPY 80 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~~~~~~Y 80 (302)
++|| ++||+++++++++|++.|. +++++|+||+|+|||+++|+++ ++++|.|+|+| +|
T Consensus 43 l~dL-~~lp~~~~~~~~~C~~~w~------~~~~~w~Gv~L~dlL~~ag~~~-------~a~~V~~~a~D--------gY 100 (180)
T cd02109 43 YEDL-LALPQTEYTADFHCVTGWS------KLDVVWEGVSLKDLLEAARPDP-------EATFVMAHSYD--------GY 100 (180)
T ss_pred HHHH-hCCCCEEEEEEEEecCCCc------ccCcEEEeeEHHHHHHHcCCCC-------CCeEEEEEecC--------Cc
Confidence 4688 5899999999999999764 3689999999999999999986 58999999998 89
Q ss_pred EEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeecCccCC
Q 022157 81 KASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFP 154 (302)
Q Consensus 81 ~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~Y~~~~ 154 (302)
..+||+++++++ ++||||+||||||+.+||||||||+||+||+||+|||++|+|++++.+|||+++||+...
T Consensus 101 ~~~ipl~~~~~~--~~iLA~~~nG~pL~~~~GgPlrlv~P~~~G~k~vKwl~~I~~~~~~~~g~we~~gy~~~~ 172 (180)
T cd02109 101 TTNLPLEDLLRE--DSLLATKMDGEPLPPEHGGPARLVVPHLYFWKSAKWLRGIEFLDEDEPGFWERRGYHERG 172 (180)
T ss_pred eEEeEHHHhcCC--CeEEEEeeCCeECChhcCceEEEEeCCeeeeeCceECCEEEEEeCCCCCcccccCcCCCC
Confidence 999999999985 899999999999999999999999999999999999999999999999999999999863
No 14
>PF00174 Oxidored_molyb: Oxidoreductase molybdopterin binding domain; InterPro: IPR000572 A number of different eukaryotic oxidoreductases that require and bind a molybdopterin cofactor have been shown [] to share a few regions of sequence similarity. These enzymes include xanthine dehydrogenase (1.1.1.204 from EC), aldehyde oxidase (1.2.3.1 from EC), nitrate reductase (1.7.1.1 from EC), and sulphite oxidase (1.8.3.1 from EC). The multidomain redox enzyme NAD(P)H:nitrate reductase (NR) catalyses the reduction of nitrate to nitrite in a single polypeptide electron transport chain with electron flow from NAD(P)H-FAD-cytochrome b5-molybdopterin-NO(3). Three forms of NR are known, an NADH-specific enzyme found in higher plants and algae (1.7.1.1 from EC); an NAD(P)H-bispecific enzyme found in higher plants, algae and fungi (1.7.1.2 from EC); and an NADPH-specific enzyme found only in fungi (1.7.1.3 from EC) []. The mitochondrial enzyme sulphite oxidase (sulphite:ferricytochrome c oxidoreductase; 1.8.2.1 from EC) catalyses oxidation of sulphite to sulphate, using cytochrome c as the physiological electron acceptor. Sulphite oxidase consists of two structure/function domains, an N-terminal haem domain, similar to cytochrome b5; and a C-terminal molybdopterin domain [].; GO: 0009055 electron carrier activity, 0055114 oxidation-reduction process; PDB: 1XDY_I 1XDQ_E 2A9A_B 3R19_A 2A9D_A 3HBQ_A 2A9C_B 3HBG_A 2A9B_A 1SOX_B ....
Probab=100.00 E-value=3.2e-36 Score=262.12 Aligned_cols=133 Identities=40% Similarity=0.661 Sum_probs=108.9
Q ss_pred ChhhhhhCCCeEEEEEEEecCC------CCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccc
Q 022157 1 MCHLYLNNPKEYINLLLFCAVR------TNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKE 74 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~gr------~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~ 74 (302)
|+||+ +||+++++++++|+++ |..+ +|++++|+||+|+|||++||+++ ++++|.|+|.|....
T Consensus 31 l~dL~-~lp~~~~~~~~~c~~~~~~~~~w~~~---~i~~~~~~GV~L~dlL~~ag~~~-------~a~~V~~~~~D~~~~ 99 (169)
T PF00174_consen 31 LADLK-ALPQVTQTVTLHCVGNRRAGFPWSAG---AIGNAEWTGVPLSDLLEKAGIKP-------DAKYVVFTGADGYPM 99 (169)
T ss_dssp HHHHH-HS-EEEEEEEEEETTTTHHSHHCCST---SEEEEEEEEEEHHHHHHHHTB-T-------T-EEEEEEESCETTC
T ss_pred HHHHh-CCcCeEEEEEEEecCCCccCcccccc---ceeeeeeEEEcHHHHHHHcCCCC-------CccEEEEEEcCCCcc
Confidence 57895 9999999999999996 5432 46799999999999999999986 589999999983222
Q ss_pred cCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceee
Q 022157 75 ENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQ 147 (302)
Q Consensus 75 ~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~ 147 (302)
...+|.++||++++++. ++||||+||||||+.+||+|+|||+|+.+|++|||||++|+|++++.+||||+
T Consensus 100 -~~~gY~~~l~~~~~~~~--~~iLA~~~nG~pL~~~~GgPlrlvvP~~~g~~~vKwv~~Ie~~~~~~~g~we~ 169 (169)
T PF00174_consen 100 -THDGYSVSLPLEDALEE--DVILAYEMNGEPLPPEHGGPLRLVVPGKYGYRSVKWVSRIEVTDEESPGYWEE 169 (169)
T ss_dssp -TTSSEEEEEEHHHHHST--CSEEEEEETTEE--GGGTTT-EEE-TTBBGGGS-BSEEEEEEESS---SHHHH
T ss_pred -cCCCeEEEEEHHHhhcC--CeEEEEccCCccccccccCcEEEecCCeEccCCceECCEEEEEeCCCCCCccC
Confidence 33589999999999985 89999999999999999999999999999999999999999999999999984
No 15
>COG2041 Sulfite oxidase and related enzymes [General function prediction only]
Probab=100.00 E-value=7.2e-34 Score=264.31 Aligned_cols=129 Identities=36% Similarity=0.629 Sum_probs=121.1
Q ss_pred ChhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccccCCCC-
Q 022157 1 MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGP- 79 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~~~~~~- 79 (302)
++||+. ||+.+++.+++|+++|++- -..|+||+|++||+++|+++ +|++|.|++.| +
T Consensus 111 ~~dl~~-~p~~~~~~~~~Cv~~Ws~~------~~~W~Gv~l~~lL~~~~p~~-------~A~~V~f~~~d--------~~ 168 (271)
T COG2041 111 YEDLLA-LPLEERIYTFHCVEGWSMV------DAPWTGVPLRELLDRAGPKD-------NAKYVMFHSLD--------GP 168 (271)
T ss_pred HHHHhh-CCcccEEEEEEEecCceEe------ecceeeeeHHHHHHHhCcCC-------CCeEEEEEccC--------cc
Confidence 478965 9999999999999988762 23899999999999999998 69999999998 5
Q ss_pred -eEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeecCccC
Q 022157 80 -YKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 153 (302)
Q Consensus 80 -Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~Y~~~ 153 (302)
|++++||+++|++ ++||||+|||+|||++||||+|||||++||+|++|||++|+|++++..+||+..+|+.+
T Consensus 169 ~y~~~l~l~~a~~p--~~llA~~~~G~~Lp~~~G~PlRLvvp~~yg~k~~K~l~~I~l~~~~~~g~We~~gy~~~ 241 (271)
T COG2041 169 DYTTGLPLDDALHP--LTLLAYGMNGEPLPPENGAPLRLVVPGKYGWKSAKWLVRIELTDKPPDGYWERNGYHEY 241 (271)
T ss_pred ccccCCCHHHhcCc--HhhHHHHhcCccCccccCCceEEEecchhcccCceEEEEEEEecCCCCCchhhcCcccc
Confidence 9999999999997 79999999999999999999999999999999999999999999999999999999875
No 16
>cd00321 SO_family_Moco Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=99.97 E-value=2.7e-31 Score=228.48 Aligned_cols=123 Identities=45% Similarity=0.733 Sum_probs=107.6
Q ss_pred ChhhhhhCCCeEEEEEEEecC-CCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccccCCCC
Q 022157 1 MCHLYLNNPKEYINLLLFCAV-RTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGP 79 (302)
Q Consensus 1 ~~~L~~~~p~~~~~~~l~C~g-r~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~~~~~~ 79 (302)
++|| ++||+++++++++|++ +|... .+++++|+||+|++||+++|+++ ++++|.|+|.|.. ++++
T Consensus 33 l~eL-~~lp~~~~~~~~~c~~n~~~~~---~~~~~~~~Gv~L~~lL~~ag~~~-------~~~~v~~~a~d~~---~~dg 98 (156)
T cd00321 33 LDDL-KALPQVEVIATLHCVGNRWGGG---AVSNAEWTGVPLRDLLEEAGPKP-------GARYVVFEGADDP---GGDG 98 (156)
T ss_pred HHHH-hcCCCEEEEEEEEECCCCCCCc---cEeccEEEEEEHHHHHHHcCCCC-------CCeEEEEEeeCCC---CCCC
Confidence 4688 5799999999999999 33221 24689999999999999999986 5899999999421 2238
Q ss_pred eEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEecc
Q 022157 80 YKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAE 139 (302)
Q Consensus 80 Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~ 139 (302)
|..+||+++++++ ++||||+||||||+.+||+|+|||+|+.||+||+|||++|||+++
T Consensus 99 Y~~~i~~~~~~~~--~~iLA~~~nG~pL~~~~GgPlrlv~P~~~g~k~vK~v~~Iev~~~ 156 (156)
T cd00321 99 YTTSLPLEKALDP--DVLLAYEMNGEPLPPDHGFPLRLVVPGLYGWKSVKWLRRIEVTDE 156 (156)
T ss_pred EEEEEEHHHhhCC--CCEEEeeeCCeECchhhCCceEEEcCCceeeEcceeeeEEEEEcC
Confidence 9999999999984 899999999999999999999999999999999999999999863
No 17
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.42 E-value=4.8e-13 Score=110.98 Aligned_cols=105 Identities=23% Similarity=0.269 Sum_probs=91.1
Q ss_pred hhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccccCCCCeE
Q 022157 2 CHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYK 81 (302)
Q Consensus 2 ~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~~~~~~Y~ 81 (302)
.|| .++|.+++...+.... |+++|+||+|++||+..|.+ .+.|.|.+.+ +|.
T Consensus 41 qeL-eal~~~T~ete~Pw~~----------gn~rf~Gvsls~Ll~~l~ak---------~tslt~iALN--------dY~ 92 (155)
T COG3915 41 QEL-EALPDETIETETPWTQ----------GNTRFKGVSLSALLAWLGAK---------QTSLTVIALN--------DYW 92 (155)
T ss_pred HHH-hcCCcceEEEecCccc----------CceeecceeHHHHHHHhhcc---------CcceEEEEec--------cee
Confidence 466 5799999888887654 58999999999999999965 5678899987 899
Q ss_pred EEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCc---------ccccceeeeeeeEE
Q 022157 82 ASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGV---------IGARSVKWLDTINI 136 (302)
Q Consensus 82 ~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~---------~G~~~vKwl~~Ie~ 136 (302)
+.||++|+-.. +.+|||++||.++...|-+|+.+|.|=. |-.+.|-.+++|++
T Consensus 93 a~Ip~sDi~ky--npIlA~~~nGn~M~IRerGPl~~IYplds~peL~nqvyysr~vWQissi~i 154 (155)
T COG3915 93 AEIPYSDIEKY--NPILAIQNNGNYMQIRERGPLWSIYPLDSSPELDNQVYYSRMVWQISSIEI 154 (155)
T ss_pred ccCcHHHhhhc--ccEEEEEeCCcEEEEeccCceEEEeecCCChhhhhhhhhhhheeeeeeEEe
Confidence 99999998876 7999999999999999999999999943 66778888888876
No 18
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=95.97 E-value=0.005 Score=30.79 Aligned_cols=11 Identities=55% Similarity=1.114 Sum_probs=8.8
Q ss_pred EEcCCCCCcEE
Q 022157 212 ISVDGGKNWVE 222 (302)
Q Consensus 212 VS~DgG~tW~~ 222 (302)
.|.|+|+||+.
T Consensus 2 ~S~D~G~TW~~ 12 (12)
T PF02012_consen 2 YSTDGGKTWKK 12 (12)
T ss_dssp EESSTTSS-EE
T ss_pred EeCCCcccCcC
Confidence 69999999974
No 19
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=91.80 E-value=0.2 Score=35.42 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=22.3
Q ss_pred EeEEEEEC--CCccEEEEEEEeCCCCCCCC
Q 022157 247 FFEVIIDI--PHSTQIVAKAVDTAANVQPE 274 (302)
Q Consensus 247 ~W~~~~~~--~g~~~i~~RA~D~~Gn~QP~ 274 (302)
.|++.++. .|.|.|.++|+|.+||+...
T Consensus 13 ~Ws~t~~~~~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 13 NWSFTVPALADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred cEEEeCCCCCCccEEEEEEEEeCCCCCCCc
Confidence 34455554 68999999999999999875
No 20
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=91.38 E-value=1.8 Score=36.45 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=57.7
Q ss_pred eecCCCeecCC-cEEEEEEEEeCCCCCeEEEEEEc--------CC------CCCcEEeEccCcCCCcccccCCCCCceee
Q 022157 181 SLEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISV--------DG------GKNWVEASRYQKTGIPYIADHMSSDKWAW 245 (302)
Q Consensus 181 ~P~~~~~v~~G-~v~i~G~A~sggg~~I~rVEVS~--------Dg------G~tW~~A~L~~~~~~~~~~~~~~~~~~~W 245 (302)
.|.+.+++..| .+.++.-.-+ ...|.+++|.+ .+ .+.|.--+.-.-.+ +..-.=
T Consensus 25 ~p~~~~~~~~G~~ihfe~~i~d--~~~i~si~VeIH~nfd~H~h~~~~~~~~~~~~~~~~~~~~~---------g~~~~~ 93 (132)
T PF15418_consen 25 FPENCKVATRGDDIHFEADISD--NSAIKSIKVEIHNNFDHHTHSTEAGECEKPWVFEQDYDIYG---------GKKNYD 93 (132)
T ss_pred CCCCCeEEecCCcEEEEEEEEc--ccceeEEEEEEecCcCcccccccccccccCcEEEEEEcccC---------CcccEe
Confidence 68889999999 6899976655 45899999988 33 45576654321111 011122
Q ss_pred EEeEEEEEC---CCccEEEEEEEeCCCCCCCC
Q 022157 246 VFFEVIIDI---PHSTQIVAKAVDTAANVQPE 274 (302)
Q Consensus 246 ~~W~~~~~~---~g~~~i~~RA~D~~Gn~QP~ 274 (302)
..+.+++|. +|.|.++.|.+|.+||++-.
T Consensus 94 ~h~~i~IPa~a~~G~YH~~i~VtD~~Gn~~~~ 125 (132)
T PF15418_consen 94 FHEHIDIPADAPAGDYHFMITVTDAAGNQTEE 125 (132)
T ss_pred EEEeeeCCCCCCCcceEEEEEEEECCCCEEEE
Confidence 356777775 79999999999999998753
No 21
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=91.23 E-value=2.6 Score=32.84 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=57.0
Q ss_pred EEEeecCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC---
Q 022157 178 VICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI--- 254 (302)
Q Consensus 178 ~I~~P~~~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~--- 254 (302)
.|+.|..|+.|.. +++|+|.|-.- .+-..++|.-++|+.=.+.......+ .-+|..|+.++.+
T Consensus 4 ~V~~P~pg~~V~s-p~~V~G~A~~F--Egtv~~rv~D~~g~vl~e~~~~a~~g-----------~~~~g~F~~tv~~~~~ 69 (88)
T PF10648_consen 4 WVTAPAPGDTVSS-PVKVSGKARVF--EGTVNIRVRDGHGEVLAEGFVTATGG-----------APSWGPFEGTVSFPPP 69 (88)
T ss_pred EEcCCCCcCCcCC-CEEEEEEEEEe--eeEEEEEEEcCCCcEEEEeeEEeccC-----------CCcccceEEEEEeCCC
Confidence 4788999998877 79999999875 47888888877775442322222122 4589999999987
Q ss_pred -CCccEEEEEEEeCCC
Q 022157 255 -PHSTQIVAKAVDTAA 269 (302)
Q Consensus 255 -~g~~~i~~RA~D~~G 269 (302)
++.++|.+...|..+
T Consensus 70 ~~~~g~l~v~~~s~~d 85 (88)
T PF10648_consen 70 PPGKGTLEVFEDSAKD 85 (88)
T ss_pred CCCceEEEEEEeCCCC
Confidence 466788888777654
No 22
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=75.89 E-value=8.7 Score=36.35 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=37.9
Q ss_pred eEEEEeecCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCc
Q 022157 176 QCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228 (302)
Q Consensus 176 ~S~I~~P~~~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~ 228 (302)
+..+..|..+..+..|++.+-.+.....+.....+-+|-|+|+||+......+
T Consensus 142 ~~~~~~~g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~ 194 (351)
T cd00260 142 AALFTGPGSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVND 194 (351)
T ss_pred eEEEecCcCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCC
Confidence 34555666666777788776666665444567888999999999998766543
No 23
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=70.73 E-value=4.1 Score=29.29 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=20.5
Q ss_pred EeEEEEEC---CCccEEEEEEEeCCCCCCC
Q 022157 247 FFEVIIDI---PHSTQIVAKAVDTAANVQP 273 (302)
Q Consensus 247 ~W~~~~~~---~g~~~i~~RA~D~~Gn~QP 273 (302)
.|...++- .|.|+|.++++|.+||.--
T Consensus 11 ~~~~~~P~~~~dg~yt~~v~a~D~AGN~~~ 40 (60)
T PF12245_consen 11 VWSTVIPENDADGEYTLTVTATDKAGNTSS 40 (60)
T ss_pred ceeccccCccCCccEEEEEEEEECCCCEEE
Confidence 34444544 5789999999999999764
No 24
>TIGR02807 cas6_var CRISPR-associated protein, Cas6-related. Members of this protein family resemble the Cas6 proteins described by TIGR01877 in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis ATCC 29413, Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus DK 1622. Oddly, an orphan member is found in Thiobacillus denitrificans ATCC 25259, whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=69.72 E-value=1.9 Score=38.56 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=17.8
Q ss_pred EEEEEecCCccCCCCCCCce
Q 022157 96 VLLAYEMNGEPLNRDHGYPL 115 (302)
Q Consensus 96 vlLAy~mNGepLp~~hG~Pl 115 (302)
+=|+|.++|+.||.+|||+|
T Consensus 4 vDl~F~v~g~~lP~DHay~L 23 (190)
T TIGR02807 4 IDLLFPVRGGTVPADHAYML 23 (190)
T ss_pred EEEEeEecCccccccchHHH
Confidence 34889999999999999985
No 25
>cd02847 Chitobiase_C_term Chitobiase C-terminus domain. Chitobiase (AKA N-acetylglucosaminidase) digests the beta, 1-4 glycosidic bonds of the N-acetylglucosamine (NAG) oligomers found in chitin, an important structural element of fungal cell wall and arthropod exoskeletons. It is thought to proceed through an acid-base reaction mechanism, in which one protein carboxylate acts as catalytic acid, while the nucleophile is the polar acetamido group of the sugar in a substrate-assisted reaction with retention of the anomeric configuration. The C-terminus of chitobiase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chit
Probab=68.41 E-value=14 Score=28.29 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=22.7
Q ss_pred CCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEc
Q 022157 185 VNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASR 225 (302)
Q Consensus 185 ~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L 225 (302)
|..+..|.+.+. .++-| ..+|-|+|||++|+..+-
T Consensus 16 ga~i~~g~l~~n-~~~pg-----~~i~Yt~dgg~~w~~Y~~ 50 (78)
T cd02847 16 GAKVENGKLEMN-VSLPG-----LTLQYSTDGGKNWNIYDA 50 (78)
T ss_pred CeEEEcCEEEEe-ccCCC-----cEEEEEecCCccCeeccc
Confidence 344555543332 25553 368999999999998654
No 26
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=65.30 E-value=52 Score=26.08 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=41.5
Q ss_pred CCcEEEEEEEEeCCCCCeEEEEEEcCC--CCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC-CCccEEEEEEEe
Q 022157 190 PGKAKVSGYAVSGGGRGIERVDISVDG--GKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI-PHSTQIVAKAVD 266 (302)
Q Consensus 190 ~G~v~i~G~A~sggg~~I~rVEVS~Dg--G~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~-~g~~~i~~RA~D 266 (302)
.|.+.|+ +.++.++.. .+++|.+|+ |+.-....+... + .-..|..-+..+.+ .|.++|..+...
T Consensus 44 ~g~y~~~-~~~a~~~~~-~~~~l~id~~~g~~~~~~~~~~t-g----------~w~~~~~~~~~v~l~~G~h~i~l~~~~ 110 (125)
T PF03422_consen 44 AGTYTLT-IRYANGGGG-GTIELRIDGPDGTLIGTVSLPPT-G----------GWDTWQTVSVSVKLPAGKHTIYLVFNG 110 (125)
T ss_dssp SEEEEEE-EEEEESSSS-EEEEEEETTTTSEEEEEEEEE-E-S----------STTEEEEEEEEEEEESEEEEEEEEESS
T ss_pred CceEEEE-EEEECCCCC-cEEEEEECCCCCcEEEEEEEcCC-C----------CccccEEEEEEEeeCCCeeEEEEEEEC
Confidence 4577777 333433334 999999999 655555565322 2 12235555555555 688999998877
Q ss_pred CCC
Q 022157 267 TAA 269 (302)
Q Consensus 267 ~~G 269 (302)
..+
T Consensus 111 ~~~ 113 (125)
T PF03422_consen 111 GDG 113 (125)
T ss_dssp SSS
T ss_pred CCC
Confidence 654
No 27
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=61.11 E-value=11 Score=32.58 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.2
Q ss_pred EeEEEEEC----CCccEEEE-EEEeCCCCCCC
Q 022157 247 FFEVIIDI----PHSTQIVA-KAVDTAANVQP 273 (302)
Q Consensus 247 ~W~~~~~~----~g~~~i~~-RA~D~~Gn~QP 273 (302)
.|.|.|.. .|.|.|.+ +|+|.+||..-
T Consensus 2 ~~~~~fd~~~l~dG~Y~l~~~~a~D~agN~~~ 33 (158)
T PF13750_consen 2 NYTYTFDLSTLPDGSYTLTVVTATDAAGNTST 33 (158)
T ss_pred cEEEEEEeCcCCCccEEEEEEEEEecCCCEEE
Confidence 36777776 58999999 89999999753
No 28
>PF09559 Cas6: Cas6 Crispr; InterPro: IPR014174 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this entry resemble the Cas6 proteins described by IPR010156 from INTERPRO in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis (strain ATCC 29413/PCC 7937), Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus (strain DK 1622). Oddly, an orphan member is found in Thiobacillus denitrificans (strain ATCC 25259), whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=60.54 E-value=3.3 Score=37.16 Aligned_cols=18 Identities=39% Similarity=0.850 Sum_probs=16.6
Q ss_pred EEEecCCccCCCCCCCce
Q 022157 98 LAYEMNGEPLNRDHGYPL 115 (302)
Q Consensus 98 LAy~mNGepLp~~hG~Pl 115 (302)
|+|.++|+.||.+|||+|
T Consensus 3 l~F~i~g~~LP~DH~y~L 20 (195)
T PF09559_consen 3 LVFSIRGKTLPADHAYAL 20 (195)
T ss_pred EEEEeCCcccCcccHHHH
Confidence 789999999999999975
No 29
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=60.13 E-value=13 Score=26.20 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=20.2
Q ss_pred EEEEEC--CCccEEEEEEEeCCCCCCCC
Q 022157 249 EVIIDI--PHSTQIVAKAVDTAANVQPE 274 (302)
Q Consensus 249 ~~~~~~--~g~~~i~~RA~D~~Gn~QP~ 274 (302)
++.++. +|.|+|.+||.|..|.....
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCcc
Confidence 666766 79999999999999877664
No 30
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=59.10 E-value=8.7 Score=25.56 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.8
Q ss_pred cEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEc
Q 022157 192 KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASR 225 (302)
Q Consensus 192 ~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L 225 (302)
.++|+++-.+.+..+|.++++ ++|.+|..+++
T Consensus 12 ~iti~~~f~~~~~~~Ie~i~F--aDGt~w~~~~I 43 (43)
T PF06594_consen 12 SITIKNWFSSDGSYRIEQIEF--ADGTVWTRAQI 43 (43)
T ss_pred EEEEeeeECccCCCcEeEEEE--cCCCEecHHHC
Confidence 699999877754678998775 67889987654
No 31
>KOG3063 consensus Membrane coat complex Retromer, subunit VPS26 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.45 E-value=22 Score=33.04 Aligned_cols=54 Identities=30% Similarity=0.606 Sum_probs=43.3
Q ss_pred CCEEEEEe-cCCccCCCCCCCceEEEecCc---cccc------ceeeeeeeEEeccccCCceeee
Q 022157 94 ADVLLAYE-MNGEPLNRDHGYPLRVVVPGV---IGAR------SVKWLDTINILAEECQGFFMQK 148 (302)
Q Consensus 94 ~~vlLAy~-mNGepLp~~hG~PlRLvvPg~---~G~~------~vKwl~~Ie~~~~~~~g~w~~~ 148 (302)
.+++.-|+ |+|.|..-+- -|+||..-|+ .-++ |||.--++.++|++..-|+-++
T Consensus 226 ~eTiakyeIMDGapvrGEs-IPiRlFLagYdlTPtmrdinkkFsVkyyLnLVlvDeedRRYFKQq 289 (301)
T KOG3063|consen 226 TETIAKYEIMDGAPVRGES-IPIRLFLAGYDLTPTMRDINKKFSVKYYLNLVLVDEEDRRYFKQQ 289 (301)
T ss_pred cceeeeEEeccCCCcCCCe-eeeEEEecccCCCcchhhhcceeeeeeEEEEEEEchhhhhhhhhe
Confidence 46888888 9999988665 7999999988 2233 7999999999999877776654
No 32
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=52.40 E-value=1e+02 Score=26.49 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=34.0
Q ss_pred CeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEE--EECCCccEEEEEEEeCCCCCCCCCc
Q 022157 206 GIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVI--IDIPHSTQIVAKAVDTAANVQPESV 276 (302)
Q Consensus 206 ~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~--~~~~g~~~i~~RA~D~~Gn~QP~~~ 276 (302)
.|.+|+ +.||.++..-.|..... .+..+.-...++- +...+-|+|.|.|+|.+||+--...
T Consensus 81 ~i~sv~--l~Gg~~~d~v~ls~~~~--------~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aGN~~~~si 143 (158)
T PF13750_consen 81 KITSVS--LTGGPASDSVSLSWTNK--------GNGVYTLEYPRIFPSLEADDSYTLTVSATDKAGNQSTKSI 143 (158)
T ss_pred eEEEEE--EECCcccceEEEeeEec--------cCceEEeecccccCCcCCCCeEEEEEEEEecCCCEEEEEE
Confidence 455544 47777776666543321 0112333322221 1114578999999999999865443
No 33
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=50.50 E-value=1.2e+02 Score=27.17 Aligned_cols=37 Identities=35% Similarity=0.425 Sum_probs=26.2
Q ss_pred CCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccC
Q 022157 190 PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQ 227 (302)
Q Consensus 190 ~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~ 227 (302)
.|.+.+..|.-. .+..-..+.+|.|+|+||+......
T Consensus 118 ~G~l~~~~~~~~-~~~~~~~~~~S~D~G~tW~~~~~~~ 154 (275)
T PF13088_consen 118 DGRLIAPYYHES-GGSFSAFVYYSDDGGKTWSSGSPIP 154 (275)
T ss_dssp TTEEEEEEEEES-SCEEEEEEEEESSTTSSEEEEEECE
T ss_pred CCCEEEEEeecc-ccCcceEEEEeCCCCceeecccccc
Confidence 555555444333 3457888999999999999988753
No 34
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=49.30 E-value=45 Score=35.26 Aligned_cols=60 Identities=18% Similarity=0.255 Sum_probs=36.3
Q ss_pred CeEEEE-EEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC-CCc-cEEEEEEEeCCC
Q 022157 206 GIERVD-ISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI-PHS-TQIVAKAVDTAA 269 (302)
Q Consensus 206 ~I~rVE-VS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~-~g~-~~i~~RA~D~~G 269 (302)
--..|| ||+|||.||+.-....... +.. .....-.|+.-+|+++. .|. ..|..|=+.+.+
T Consensus 383 Dy~~VevvStdGg~Twt~~~g~~~~~-~~~---~~~~sg~Wv~~~~DLSayAGqtV~LrFrY~TD~~ 445 (645)
T PF05547_consen 383 DYAYVEVVSTDGGKTWTPLPGNTTGN-GNP---NGGSSGGWVDASFDLSAYAGQTVQLRFRYVTDGG 445 (645)
T ss_pred ceEEEEEEEcCCCceeEecCcccccc-CCC---CCCCccceeEeEeccccccCCeEEEEEEEEcCCC
Confidence 456899 9999999999765432211 000 01112359999999987 553 467777433333
No 35
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=48.67 E-value=13 Score=35.51 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCcEEeEccCc
Q 022157 209 RVDISVDGGKNWVEASRYQK 228 (302)
Q Consensus 209 rVEVS~DgG~tW~~A~L~~~ 228 (302)
.+-+|.|+|+||+..+...+
T Consensus 254 ~l~~S~DgGktW~~~~~~~~ 273 (302)
T PF14870_consen 254 TLLVSTDGGKTWQKDRVGEN 273 (302)
T ss_dssp -EEEESSTTSS-EE-GGGTT
T ss_pred cEEEeCCCCccceECccccC
Confidence 67899999999999887543
No 36
>COG4719 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.58 E-value=9.7 Score=32.87 Aligned_cols=65 Identities=11% Similarity=0.166 Sum_probs=35.5
Q ss_pred ecCCc-EEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccC---cCCCcccccC-CCCCceeeEEeEEEEECCCc
Q 022157 188 MKPGK-AKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQ---KTGIPYIADH-MSSDKWAWVFFEVIIDIPHS 257 (302)
Q Consensus 188 v~~G~-v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~---~~~~~~~~~~-~~~~~~~W~~W~~~~~~~g~ 257 (302)
|+++. +...|.+.+ .-+..+||+|||++|+.-.... +++ +-.+.. ..-+.|+=.+|++..-+++.
T Consensus 96 ip~~t~yv~a~~dva----~ka~~~~sIDgG~sf~~nPt~kvt~~e~-Gk~~~~~apAs~YtniRw~lp~laa~~ 165 (176)
T COG4719 96 IPSNTSYVDAGRDVA----LKAAFEVSIDGGESFQGNPTYKVTTLED-GKKSRVEAPASDYTNIRWRLPALAAGA 165 (176)
T ss_pred cCCCcEEEechhhhh----hhhcEEEEecCCcccccCCcEEEEecCC-CeEEEeecCccccceeEEeccccCCCc
Confidence 34553 566666554 2357899999999998753321 111 000100 11236777888884443443
No 37
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=45.46 E-value=12 Score=38.66 Aligned_cols=55 Identities=22% Similarity=0.380 Sum_probs=38.0
Q ss_pred CeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccc
Q 022157 79 PYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEE 140 (302)
Q Consensus 79 ~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~ 140 (302)
.|...+.-..-.+ +.++|.-+++++.|| ||||+||-.|-+-++--++..+..+.+
T Consensus 634 kF~v~ld~~~~~n--N~I~liCklddk~lP-----Pl~lsVP~~YPaq~~~vdr~~~y~a~p 688 (742)
T KOG4274|consen 634 KFEVDLDHQRHDN--NHIILICKLDDKQLP-----PLRLSVPTTYPAQNVTVDRAVIYLAAP 688 (742)
T ss_pred ceeecCCcccccC--CeeEEEEEecCCCCC-----CeeeeccccccccchhhhhHHHhhhcH
Confidence 4544443333322 479999999999999 899999999999885444444444443
No 38
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=45.10 E-value=1e+02 Score=28.96 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=17.8
Q ss_pred CeEEEEEEcCCCCCcEEeEccC
Q 022157 206 GIERVDISVDGGKNWVEASRYQ 227 (302)
Q Consensus 206 ~I~rVEVS~DgG~tW~~A~L~~ 227 (302)
.-..+-.|.|+|+||+++....
T Consensus 221 ~~~~~~~S~D~G~tWs~~~~~~ 242 (351)
T cd00260 221 GRRPVYESRDMGTTWTEALGTL 242 (351)
T ss_pred CcEEEEEEcCCCcCcccCcCCc
Confidence 3456889999999999987754
No 39
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=43.72 E-value=86 Score=24.90 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=32.9
Q ss_pred CeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEECCCccEEEEEEEeCCCCC
Q 022157 206 GIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANV 271 (302)
Q Consensus 206 ~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~~g~~~i~~RA~D~~Gn~ 271 (302)
=|..|+|+.+ |+.=-.|++...... . =.++|.+...+..+|.++.+|..|++
T Consensus 42 ~I~~v~v~~n-g~~v~~~~~~~siS~---------N----P~l~F~~~~~~~g~l~v~~~Dn~G~~ 93 (100)
T PF08770_consen 42 FIEEVEVTYN-GKPVFRADWGPSISE---------N----PYLRFSFKGKKSGTLTVTWTDNKGNS 93 (100)
T ss_dssp -EEEEEEEET-TEEEEEEEE-TTB-S---------S-----EEEEEEEESSSEEEEEEEEETTS-E
T ss_pred heEEEEEEEC-CEEEEEEEeCCcccC---------C----CcEEEEEecCCCcEEEEEEEECCCCE
Confidence 4778888764 456666666544210 1 26777777744449999999999986
No 40
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=37.90 E-value=36 Score=24.75 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=18.0
Q ss_pred cCC-cEEEEEEEEeCCCCCeEEEEEEc
Q 022157 189 KPG-KAKVSGYAVSGGGRGIERVDISV 214 (302)
Q Consensus 189 ~~G-~v~i~G~A~sggg~~I~rVEVS~ 214 (302)
.+| .+|+. +..+|++.++||.+|=
T Consensus 11 EpGVyiTl~--~~p~G~~~LkRVRFSR 35 (59)
T PF08381_consen 11 EPGVYITLV--SLPDGGNDLKRVRFSR 35 (59)
T ss_pred CCeeEEEEE--ECCCCCeeEEEEEEhh
Confidence 466 45555 6677789999999984
No 41
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=34.32 E-value=1.8e+02 Score=21.27 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=18.1
Q ss_pred CC-cEEEEEEEEeCCCCCeEEEEEEcCCCCCcE
Q 022157 190 PG-KAKVSGYAVSGGGRGIERVDISVDGGKNWV 221 (302)
Q Consensus 190 ~G-~v~i~G~A~sggg~~I~rVEVS~DgG~tW~ 221 (302)
+| .++++=---..|...+..|.+|++.=+-|+
T Consensus 3 ~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~ 35 (78)
T PF10633_consen 3 PGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT 35 (78)
T ss_dssp TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE
T ss_pred CCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc
Confidence 45 355554445555567888999988888899
No 42
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=33.43 E-value=2.1e+02 Score=21.61 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEeCCCCCeEEEEEEcCCCCCcEEeEcc
Q 022157 198 YAVSGGGRGIERVDISVDGGKNWVEASRY 226 (302)
Q Consensus 198 ~A~sggg~~I~rVEVS~DgG~tW~~A~L~ 226 (302)
+-+.||...|++|||.-.+...|..-.-.
T Consensus 18 v~n~gG~gdi~~Vevk~~~s~~W~~m~r~ 46 (82)
T PF01357_consen 18 VKNVGGDGDIKAVEVKQSGSGNWIPMKRS 46 (82)
T ss_dssp EEECCTTS-EEEEEEEETTSSS-EE-EEE
T ss_pred EEEcCCCccEEEEEEEeCCCCCceEeecC
Confidence 34455555799999998888889987754
No 43
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=32.53 E-value=36 Score=25.31 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.8
Q ss_pred CCccEEEEEEEeCCCCCC
Q 022157 255 PHSTQIVAKAVDTAANVQ 272 (302)
Q Consensus 255 ~g~~~i~~RA~D~~Gn~Q 272 (302)
.|.+.|...|+|.+||..
T Consensus 56 ~G~t~V~ytA~D~~GN~a 73 (81)
T PF02494_consen 56 VGTTTVTYTATDAAGNSA 73 (81)
T ss_pred eceEEEEEEEEECCCCEE
Confidence 368899999999999975
No 44
>PF09937 DUF2169: Uncharacterized protein conserved in bacteria (DUF2169); InterPro: IPR018683 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.53 E-value=45 Score=31.68 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=28.8
Q ss_pred ecCCCeecCC-cEEEEEEEEeCCCCCeEEEEEEcCCCC
Q 022157 182 LEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISVDGGK 218 (302)
Q Consensus 182 P~~~~~v~~G-~v~i~G~A~sggg~~I~rVEVS~DgG~ 218 (302)
..+-...|++ .|.|.|.||+-+|+++.+++|++.=|.
T Consensus 50 ~~D~~~~Kp~~dvlv~G~A~ap~g~p~~~~~V~v~vg~ 87 (297)
T PF09937_consen 50 ESDLAPPKPRTDVLVNGHAYAPGGRPVTSWDVRVRVGD 87 (297)
T ss_pred hhhccCCCCCceEEEEEEEeCCCCCccceEEEEEEEcC
Confidence 3344444555 699999999999999999999888774
No 45
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=28.36 E-value=2.5e+02 Score=24.97 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=36.1
Q ss_pred CC-cEEEEEEEEeCCCCCeEEE--EEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC--CCccEEEEEE
Q 022157 190 PG-KAKVSGYAVSGGGRGIERV--DISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI--PHSTQIVAKA 264 (302)
Q Consensus 190 ~G-~v~i~G~A~sggg~~I~rV--EVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~--~g~~~i~~RA 264 (302)
.| .++|+=-.|.. |+....+ -..-.++++|++..+....+ -+|+..+++ .|.|+..+.|
T Consensus 25 vGe~v~V~Adif~D-GHD~l~A~l~~r~~~~~~w~~vpM~~~gn---------------DrW~a~f~~~~~G~~~f~VeA 88 (187)
T PF11896_consen 25 VGEPVPVSADIFRD-GHDALAAELLWRHPGEREWQEVPMTPLGN---------------DRWEASFTPDRPGRYEFRVEA 88 (187)
T ss_dssp TT-EEEEEEEE--S-SSS-EEEEEEEE-TTS-B----B-EESTS----------------EEEEEEE--SSEEEEEEEEE
T ss_pred cCCeEEEEEEEEec-CCCcEEEEEEEECCCCCcceeeccccCCC---------------CEEEEEEECCCceeEEEEEEE
Confidence 35 58888888885 4454444 44666789999999876533 389999998 6889999999
Q ss_pred EeC
Q 022157 265 VDT 267 (302)
Q Consensus 265 ~D~ 267 (302)
+.+
T Consensus 89 W~D 91 (187)
T PF11896_consen 89 WVD 91 (187)
T ss_dssp EE-
T ss_pred Eec
Confidence 875
No 46
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=27.67 E-value=1.4e+02 Score=24.98 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=27.7
Q ss_pred cceeceEEEEeec--CCCeecCCcEEEEEEEEeCCC
Q 022157 171 MDFPVQCVICSLE--DVNVMKPGKAKVSGYAVSGGG 204 (302)
Q Consensus 171 ~~~~v~S~I~~P~--~~~~v~~G~v~i~G~A~sggg 204 (302)
..|-+||.+.+|- .++.|++|.|++..-|.++..
T Consensus 84 ~~mAPNS~f~~~i~~~~~~lk~G~Y~l~~~~~~~~~ 119 (140)
T PF11797_consen 84 MQMAPNSNFNFPIPLGGKKLKPGKYTLKITAKSGKK 119 (140)
T ss_pred CEECCCCeEEeEecCCCcCccCCEEEEEEEEEcCCc
Confidence 3567889998874 468999999999999998643
No 47
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=27.02 E-value=2e+02 Score=23.05 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=43.0
Q ss_pred cCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEECC-------CccEEE
Q 022157 189 KPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIP-------HSTQIV 261 (302)
Q Consensus 189 ~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~~-------g~~~i~ 261 (302)
-.|.|.|+-+|+. +-..|..++|+-+||.+..-..-.... .....-.+-+|+|.++++ +..+++
T Consensus 21 L~G~V~V~Nlaye----K~V~VryT~D~W~t~~d~~a~y~~~~~-----~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~ 91 (113)
T PF03370_consen 21 LSGTVRVRNLAYE----KEVTVRYTFDNWRTFSDVPASYVSSCP-----GPSPSGNYDRFSFSIPLPDLLPPEGGRLEFC 91 (113)
T ss_dssp EEEEEEEE-SSSS----EEEEEEEETSCTSSCCEEEEEEEE--------EESTTSSEEEEEEEEE-SSE--T-TS-SEEE
T ss_pred EEEEEEEEcCCCC----eEEEEEEeeCCCCceeEEeeEEecccc-----CCCCCCcccEEEEEEECCcccccCCceEEEE
Confidence 3578888888874 678899999999999987642221000 000134567899999872 335888
Q ss_pred EEEEe
Q 022157 262 AKAVD 266 (302)
Q Consensus 262 ~RA~D 266 (302)
+|-.-
T Consensus 92 I~Y~~ 96 (113)
T PF03370_consen 92 IRYEV 96 (113)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87743
No 48
>PRK10301 hypothetical protein; Provisional
Probab=22.72 E-value=3.9e+02 Score=21.88 Aligned_cols=78 Identities=10% Similarity=-0.005 Sum_probs=48.6
Q ss_pred EeecCCCeecC--CcEEEEEEEEeCCCC-CeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC--
Q 022157 180 CSLEDVNVMKP--GKAKVSGYAVSGGGR-GIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI-- 254 (302)
Q Consensus 180 ~~P~~~~~v~~--G~v~i~G~A~sggg~-~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~-- 254 (302)
..|.+|+++.. ..|+|. |+..-+ ...+|+|.-+.|+.+.......... .-....+.++.
T Consensus 33 s~Pa~ga~v~~~P~~V~L~---F~e~v~~~~s~i~v~~~~g~~v~~~~~~~~~~-------------~~~~~~v~l~~~L 96 (124)
T PRK10301 33 QYPAANAQVTAAPQALTLN---FSEGIEPGFSGATITGPKQENIKTLPAKRNEQ-------------DQKQLIVPLADSL 96 (124)
T ss_pred cCCCCCCccccCCCEEEEE---cCCCccccccEEEEEcCCCCEeccCCccccCC-------------CCcEEEEECCCCC
Confidence 46899999873 356654 442111 2358999888887775443221110 11234566642
Q ss_pred -CCccEEEEEEEeCCCCCCC
Q 022157 255 -PHSTQIVAKAVDTAANVQP 273 (302)
Q Consensus 255 -~g~~~i~~RA~D~~Gn~QP 273 (302)
+|.|+|.=|++..+|...-
T Consensus 97 ~~G~YtV~Wrvvs~DGH~~~ 116 (124)
T PRK10301 97 KPGTYTVDWHVVSVDGHKTK 116 (124)
T ss_pred CCccEEEEEEEEecCCCccC
Confidence 6899999999999997654
No 49
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=21.94 E-value=2.1e+02 Score=22.13 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=46.5
Q ss_pred EeecCCCeecCC--cEEEEEEEEeCCCC-CeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC--
Q 022157 180 CSLEDVNVMKPG--KAKVSGYAVSGGGR-GIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI-- 254 (302)
Q Consensus 180 ~~P~~~~~v~~G--~v~i~G~A~sggg~-~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~-- 254 (302)
..|.+|++|... .|+|+ |+..-+ ...+|.|.-.+|+.+.......... =..+++.++.
T Consensus 7 s~Pa~ga~l~~~P~~v~L~---F~e~v~~~~s~v~v~~~~g~~v~~~~~~~~~~--------------~~~~~~~l~~~l 69 (97)
T PF04234_consen 7 SSPADGATLAAAPEEVTLT---FSEPVEPGFSSVTVTDPDGKRVDLGEPTVDGD--------------GKTLTVPLPPPL 69 (97)
T ss_dssp EES-TTBEE-S--SSEEEE---ESS---CCC-EEEEEEEEETTSCTCEEEEEES--------------TTEEEEEESS--
T ss_pred cCCCCCCEeecCCCEEEEE---eCCCCccCccEEEEEcCCCceeecCcceecCC--------------ceEEEEECCCCC
Confidence 579999999744 56654 564322 3678999888887775443322110 0255566654
Q ss_pred -CCccEEEEEEEeCCCCCC
Q 022157 255 -PHSTQIVAKAVDTAANVQ 272 (302)
Q Consensus 255 -~g~~~i~~RA~D~~Gn~Q 272 (302)
+|.|+|.=|++-.+|...
T Consensus 70 ~~G~YtV~wrvvs~DGH~~ 88 (97)
T PF04234_consen 70 PPGTYTVSWRVVSADGHPV 88 (97)
T ss_dssp -SEEEEEEEEEEETTSCEE
T ss_pred CCceEEEEEEEEecCCCCc
Confidence 688999999999998754
No 50
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=21.20 E-value=80 Score=23.89 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=12.8
Q ss_pred CCccEEEEEEEeCCCCCC
Q 022157 255 PHSTQIVAKAVDTAANVQ 272 (302)
Q Consensus 255 ~g~~~i~~RA~D~~Gn~Q 272 (302)
+|.|+|.| +|++|+..
T Consensus 70 ~G~h~l~v--vD~~G~~~ 85 (89)
T PF06832_consen 70 PGEHTLTV--VDAQGRSA 85 (89)
T ss_pred CeeEEEEE--EcCCCCEE
Confidence 68888777 99999864
No 51
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=20.68 E-value=3.5e+02 Score=19.80 Aligned_cols=53 Identities=13% Similarity=0.259 Sum_probs=36.8
Q ss_pred EEEEEEEeCC-CCCeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEECCCccEEEEEEEe
Q 022157 194 KVSGYAVSGG-GRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVD 266 (302)
Q Consensus 194 ~i~G~A~sgg-g~~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~~g~~~i~~RA~D 266 (302)
+|+|.-.+.. +.+|..|-|.+.++. .....+..+ .|++..+ +|.++|.+++..
T Consensus 1 ti~G~V~d~~t~~pl~~a~V~~~~~~---~~~~Td~~G----------------~F~i~~~-~g~~~l~is~~G 54 (88)
T PF13715_consen 1 TISGKVVDSDTGEPLPGATVYLKNTK---KGTVTDENG----------------RFSIKLP-EGDYTLKISYIG 54 (88)
T ss_pred CEEEEEEECCCCCCccCeEEEEeCCc---ceEEECCCe----------------EEEEEEc-CCCeEEEEEEeC
Confidence 4677777766 789999999999886 334444444 6667733 677788877754
No 52
>PF13285 DUF4073: Domain of unknown function (DUF4073)
Probab=20.06 E-value=1.4e+02 Score=25.62 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=17.4
Q ss_pred EEEEEEcCCCCCcEEeEccCcC
Q 022157 208 ERVDISVDGGKNWVEASRYQKT 229 (302)
Q Consensus 208 ~rVEVS~DgG~tW~~A~L~~~~ 229 (302)
+-.|-|+||++.|...+-..++
T Consensus 107 ~~MEYsv~g~~~W~~y~p~npP 128 (158)
T PF13285_consen 107 EYMEYSVDGGNNWHTYDPANPP 128 (158)
T ss_pred cEEEEeecCccccEeCCcCCCC
Confidence 3478999999999998766553
No 53
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=20.06 E-value=2.1e+02 Score=27.44 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=44.1
Q ss_pred EceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceE
Q 022157 37 SGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLR 116 (302)
Q Consensus 37 ~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlR 116 (302)
-+|||+..|.++|..+...-...-.-||.|.+.+ .+++-|..+..--|.--|.| |
T Consensus 123 ftvpLR~aLr~ag~Ls~~~~~~~p~lhv~f~~~~------------------------~cyvGysy~~n~s~~~mGIP-R 177 (358)
T COG2933 123 FTVPLRAALRKAGRLSAYEHPKRPVLHVFFIAPG------------------------CCYVGYSYSNNNSPFYMGIP-R 177 (358)
T ss_pred hccHhHHHHHhccccccccCCCCcEEEEEEEcCC------------------------eEEEeecccCCCCccccCCc-c
Confidence 3699999999999986432111123455554432 45555555444445556889 9
Q ss_pred EEecCccccccee
Q 022157 117 VVVPGVIGARSVK 129 (302)
Q Consensus 117 LvvPg~~G~~~vK 129 (302)
|=+|-..-.+|.=
T Consensus 178 LKfp~dAPSRStL 190 (358)
T COG2933 178 LKFPADAPSRSTL 190 (358)
T ss_pred ccCCCCCCchhhh
Confidence 9999998888853
Done!