Query 022158
Match_columns 302
No_of_seqs 259 out of 2252
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:28:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02962 hydroxyacylglutathion 100.0 7.7E-46 1.7E-50 330.0 30.3 249 53-301 3-251 (251)
2 KOG0814 Glyoxylase [General fu 100.0 3.8E-43 8.2E-48 285.9 14.3 231 59-297 7-237 (237)
3 PLN02469 hydroxyacylglutathion 100.0 4.8E-36 1E-40 268.7 24.9 195 71-273 10-238 (258)
4 PLN02398 hydroxyacylglutathion 100.0 1.8E-34 3.9E-39 264.9 25.6 228 29-272 45-307 (329)
5 PRK10241 hydroxyacylglutathion 100.0 6.4E-33 1.4E-37 248.0 22.5 188 70-273 9-229 (251)
6 TIGR03413 GSH_gloB hydroxyacyl 100.0 1.1E-32 2.5E-37 246.0 23.8 188 70-272 7-227 (248)
7 KOG0813 Glyoxylase [General fu 100.0 2.3E-30 5E-35 227.7 19.9 194 67-270 7-239 (265)
8 PRK11921 metallo-beta-lactamas 99.9 2.1E-23 4.6E-28 198.1 16.3 125 69-204 29-166 (394)
9 COG0491 GloB Zn-dependent hydr 99.9 1.8E-21 3.9E-26 171.6 18.9 163 70-243 22-212 (252)
10 PRK05452 anaerobic nitric oxid 99.9 8.2E-22 1.8E-26 191.0 15.9 125 69-204 31-170 (479)
11 smart00849 Lactamase_B Metallo 99.8 1.5E-19 3.2E-24 152.2 18.7 159 70-241 3-183 (183)
12 PF00753 Lactamase_B: Metallo- 99.8 7.3E-20 1.6E-24 154.0 11.0 161 69-241 2-194 (194)
13 COG0426 FpaA Uncharacterized f 99.8 1.7E-18 3.6E-23 160.4 15.5 200 69-298 32-262 (388)
14 PF14597 Lactamase_B_5: Metall 99.7 1.1E-16 2.3E-21 132.4 14.9 153 71-243 21-182 (199)
15 PRK11539 ComEC family competen 99.7 3.7E-16 8.1E-21 159.5 14.6 154 64-242 502-667 (755)
16 TIGR00649 MG423 conserved hypo 99.7 6.8E-16 1.5E-20 148.1 14.7 127 71-205 12-163 (422)
17 TIGR00361 ComEC_Rec2 DNA inter 99.6 2.4E-14 5.2E-19 144.5 20.6 156 64-242 441-609 (662)
18 COG2333 ComEC Predicted hydrol 99.6 2E-13 4.4E-18 123.7 17.4 205 63-295 44-265 (293)
19 TIGR03675 arCOG00543 arCOG0054 99.4 4.4E-13 9.5E-18 133.7 11.5 138 60-204 174-350 (630)
20 PRK11244 phnP carbon-phosphoru 99.4 1.5E-12 3.2E-17 116.4 12.9 119 70-202 34-164 (250)
21 PRK00685 metal-dependent hydro 99.4 5.2E-12 1.1E-16 111.1 12.3 121 71-204 6-146 (228)
22 TIGR03307 PhnP phosphonate met 99.4 5.7E-12 1.2E-16 111.8 12.3 118 71-202 25-154 (238)
23 COG0595 mRNA degradation ribon 99.4 5.9E-12 1.3E-16 123.0 12.3 129 69-205 18-171 (555)
24 COG1237 Metal-dependent hydrol 99.3 8.3E-11 1.8E-15 103.2 15.3 69 72-145 21-93 (259)
25 PRK04286 hypothetical protein; 99.3 2.7E-11 5.8E-16 111.1 11.9 124 71-202 13-187 (298)
26 PRK02126 ribonuclease Z; Provi 99.2 4E-11 8.7E-16 111.4 11.0 114 65-186 8-173 (334)
27 TIGR02649 true_RNase_BN ribonu 99.2 1.9E-10 4.2E-15 105.7 14.2 112 70-186 14-150 (303)
28 TIGR02651 RNase_Z ribonuclease 99.2 1.2E-10 2.5E-15 106.7 12.6 107 71-186 16-148 (299)
29 TIGR02108 PQQ_syn_pqqB coenzym 99.2 5E-11 1.1E-15 109.4 9.2 120 73-201 38-199 (302)
30 PRK02113 putative hydrolase; P 99.2 8E-11 1.7E-15 105.2 10.0 115 71-202 33-171 (252)
31 COG1236 YSH1 Predicted exonucl 99.2 4.1E-11 8.9E-16 114.9 8.0 124 70-203 11-166 (427)
32 PRK05184 pyrroloquinoline quin 99.1 1.2E-10 2.6E-15 107.0 8.6 125 71-201 37-199 (302)
33 PF12706 Lactamase_B_2: Beta-l 99.1 7E-11 1.5E-15 100.7 3.7 110 88-203 2-140 (194)
34 COG1782 Predicted metal-depend 99.1 2.5E-10 5.4E-15 107.7 7.1 127 71-204 192-356 (637)
35 PRK00055 ribonuclease Z; Revie 99.0 1.7E-09 3.7E-14 97.2 8.3 66 72-145 19-93 (270)
36 PF13483 Lactamase_B_3: Beta-l 98.9 2.4E-09 5.1E-14 89.4 7.6 106 71-203 5-116 (163)
37 PRK11709 putative L-ascorbate 98.8 4.2E-08 9E-13 91.9 13.1 89 111-203 109-230 (355)
38 KOG1136 Predicted cleavage and 98.8 8.7E-09 1.9E-13 93.0 7.6 123 71-202 15-180 (501)
39 KOG4736 Uncharacterized conser 98.8 1.7E-08 3.7E-13 89.8 7.9 151 74-244 96-257 (302)
40 COG2015 Alkyl sulfatase and re 98.6 1.9E-07 4.1E-12 88.1 8.3 165 72-246 125-352 (655)
41 COG2220 Predicted Zn-dependent 98.4 2.4E-06 5.1E-11 76.7 10.6 194 59-279 5-237 (258)
42 KOG1137 mRNA cleavage and poly 98.4 4.2E-07 9.1E-12 86.9 5.2 123 71-202 25-183 (668)
43 COG1235 PhnP Metal-dependent h 98.3 1.3E-06 2.7E-11 79.1 7.1 53 87-143 41-93 (269)
44 KOG1135 mRNA cleavage and poly 98.3 6.3E-06 1.4E-10 80.8 11.2 126 66-201 8-172 (764)
45 TIGR02650 RNase_Z_T_toga ribon 98.2 4.2E-06 9.1E-11 75.3 8.2 86 86-176 18-134 (277)
46 COG1234 ElaC Metal-dependent h 98.1 2.2E-05 4.7E-10 71.9 11.2 66 71-144 18-92 (292)
47 COG2248 Predicted hydrolase (m 98.1 4.6E-05 1E-09 66.8 11.8 120 75-202 17-186 (304)
48 KOG2121 Predicted metal-depend 97.5 0.00012 2.5E-09 72.9 4.5 58 74-134 462-524 (746)
49 KOG1361 Predicted hydrolase in 97.3 0.00041 9E-09 66.6 5.7 86 111-203 112-207 (481)
50 PF02112 PDEase_II: cAMP phosp 97.1 0.0031 6.6E-08 58.7 8.9 58 70-130 14-98 (335)
51 PF14234 DUF4336: Domain of un 94.4 0.57 1.2E-05 42.6 10.8 123 72-204 19-161 (285)
52 PF13691 Lactamase_B_4: tRNase 92.2 0.42 9E-06 33.3 5.0 46 74-127 13-63 (63)
53 COG5212 PDE1 Low-affinity cAMP 91.5 0.39 8.4E-06 43.1 5.2 89 111-202 112-233 (356)
54 KOG3592 Microtubule-associated 89.4 0.25 5.4E-06 49.7 2.5 48 85-133 56-103 (934)
55 KOG3798 Predicted Zn-dependent 70.1 14 0.00031 33.1 6.1 88 111-204 132-242 (343)
56 PF14572 Pribosyl_synth: Phosp 60.1 28 0.0006 29.6 5.9 51 90-143 92-142 (184)
57 PRK02269 ribose-phosphate pyro 50.1 35 0.00075 31.7 5.4 37 85-122 217-257 (320)
58 COG0462 PrsA Phosphoribosylpyr 49.0 41 0.0009 31.1 5.6 46 85-133 214-263 (314)
59 PRK00129 upp uracil phosphorib 45.4 40 0.00087 29.1 4.8 58 85-146 124-185 (209)
60 PRK04923 ribose-phosphate pyro 44.4 40 0.00086 31.3 4.8 37 85-122 217-257 (319)
61 TIGR01091 upp uracil phosphori 43.4 69 0.0015 27.6 5.9 58 85-146 122-183 (207)
62 COG4566 TtrR Response regulato 41.2 51 0.0011 28.3 4.5 46 85-132 48-96 (202)
63 PF14681 UPRTase: Uracil phosp 38.9 26 0.00055 30.3 2.5 55 85-145 121-183 (207)
64 PRK02458 ribose-phosphate pyro 38.1 69 0.0015 29.8 5.4 56 85-143 218-277 (323)
65 PLN02297 ribose-phosphate pyro 36.6 53 0.0011 30.6 4.3 37 85-122 230-270 (326)
66 PRK07199 phosphoribosylpyropho 35.6 35 0.00076 31.3 3.0 36 85-121 211-250 (301)
67 cd07393 MPP_DR1119 Deinococcus 33.1 1.7E+02 0.0036 25.4 6.8 40 193-243 43-83 (232)
68 PRK00553 ribose-phosphate pyro 31.2 49 0.0011 30.9 3.2 37 85-122 218-258 (332)
69 cd01833 XynB_like SGNH_hydrola 30.8 87 0.0019 24.8 4.4 45 194-238 2-46 (157)
70 PF12000 Glyco_trans_4_3: Gkyc 30.6 85 0.0018 26.3 4.3 40 99-142 54-93 (171)
71 PF05582 Peptidase_U57: YabG p 30.4 88 0.0019 28.5 4.5 27 217-243 139-165 (287)
72 PLN02541 uracil phosphoribosyl 28.5 76 0.0016 28.3 3.8 59 86-146 158-220 (244)
73 PRK03092 ribose-phosphate pyro 25.3 1.3E+02 0.0028 27.7 4.8 38 85-122 201-241 (304)
74 COG0276 HemH Protoheme ferro-l 25.2 1.1E+02 0.0024 28.4 4.4 59 217-281 166-226 (320)
75 cd07400 MPP_YydB Bacillus subt 24.8 1.3E+02 0.0028 23.5 4.3 12 192-203 36-47 (144)
76 PTZ00145 phosphoribosylpyropho 24.3 3E+02 0.0065 26.8 7.3 37 85-122 335-375 (439)
77 KOG1448 Ribose-phosphate pyrop 24.2 1.9E+02 0.004 26.7 5.4 47 74-122 205-254 (316)
78 COG0035 Upp Uracil phosphoribo 23.7 1.8E+02 0.004 25.2 5.2 56 85-146 124-186 (210)
79 PRK11148 cyclic 3',5'-adenosin 22.2 1.4E+02 0.0031 26.6 4.5 39 194-243 58-97 (275)
80 COG0420 SbcD DNA repair exonuc 21.7 1.1E+02 0.0023 29.0 3.7 47 193-245 42-89 (390)
81 PRK11624 cdsA CDP-diglyceride 21.4 59 0.0013 29.6 1.8 28 216-243 232-259 (285)
82 PLN02369 ribose-phosphate pyro 21.1 98 0.0021 28.4 3.2 38 85-122 202-242 (302)
83 KOG1145 Mitochondrial translat 20.5 1E+02 0.0022 31.1 3.2 49 120-177 160-213 (683)
84 TIGR02855 spore_yabG sporulati 20.3 1.8E+02 0.0039 26.4 4.5 26 218-243 139-164 (283)
No 1
>PLN02962 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=7.7e-46 Score=329.96 Aligned_cols=249 Identities=89% Similarity=1.354 Sum_probs=222.0
Q ss_pred ccCCCCCCeEEEEEeecCCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHH
Q 022158 53 SSSSSSSKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIK 132 (302)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~ 132 (302)
+|+.++..|.+++++....++|||||.++...+++++|||||....+.+++.+++.+.++.+|++||.|+||++|+..|+
T Consensus 3 ~~~~~~~~m~~~~~~~~~~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~ 82 (251)
T PLN02962 3 SSSSSSSKLLFRQLFEKESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLK 82 (251)
T ss_pred CCCCCCCceEEEEeecCCceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHH
Confidence 35566778999999999999999999874111468999999965678888999999999999999999999999999999
Q ss_pred hhCCCCeEEeccCCCCCcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEccccccCCcCCCCC
Q 022158 133 SKVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDF 212 (302)
Q Consensus 133 ~~~p~~~i~~~~~~~~~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~~~~~~ 212 (302)
+.+|++++++++......+..+.+|+.+.+|+..++++++||||+|+++|++.+....+..+++|+||++|.+++++.++
T Consensus 83 ~~~~~a~v~~~~~~~~~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g~Gr~d~ 162 (251)
T PLN02962 83 TKLPGVKSIISKASGSKADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDF 162 (251)
T ss_pred HHCCCCeEEeccccCCCCCEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCCcCCCCC
Confidence 99999999998876666677899999999999999999999999999999986421123567999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCCCCcccHHHHHHhCCCCcCCHHHHHHHHHhcCCCCCcccchhhhhhhh
Q 022158 213 QGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEETFKSIMENLNLSYPKMIDIAVPANLV 292 (302)
Q Consensus 213 ~~~~~~~~~~sl~~~l~~l~~~~~i~PgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (302)
++++..++++|+++++..|+++++|+|||||.+.+.++++++++.|+|+..++++|++.+.+..+++|++++.+++.|++
T Consensus 163 ~~g~~~~l~~Sl~~~l~~L~~~~~i~PGHg~~~~~~tti~~e~~~n~~l~~~~~~fv~~~~~~~~~~p~~~~~~~~~n~~ 242 (251)
T PLN02962 163 QGGSSDQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEMLYNPRLTKDEETFKTIMENLNLPYPKMIDVAVPANMV 242 (251)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCeEEECCCCCCCCCCcCHHHHHhhCcccCCCHHHHHHHHhhCCCCCchHHHHHHHHHHH
Confidence 99999999999977899999999999999988778899999999999999999999999999999999999999999999
Q ss_pred cCCCccCCC
Q 022158 293 CGMQDLTSK 301 (302)
Q Consensus 293 ~~~~~~~~~ 301 (302)
+|-|+--+|
T Consensus 243 ~~~~~~~~~ 251 (251)
T PLN02962 243 CGLQDPPAK 251 (251)
T ss_pred cCCCCCCCC
Confidence 999876553
No 2
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=100.00 E-value=3.8e-43 Score=285.90 Aligned_cols=231 Identities=69% Similarity=1.072 Sum_probs=220.2
Q ss_pred CCeEEEEEeecCCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCC
Q 022158 59 SKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGV 138 (302)
Q Consensus 59 ~~~~~~~~~~~~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~ 138 (302)
..+.++|+|+..+.+.+||+.+-. ++++++|||....+.+-.+.++++|.++.+-+.||.|+||+.|...++..+|++
T Consensus 7 ~~~~frqlfe~~SsTytYll~d~~--~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg~ 84 (237)
T KOG0814|consen 7 NAPIFRQLFEFESSTYTYLLGDHK--TGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPGC 84 (237)
T ss_pred ccHHHHHHhccccceEEEEeeeCC--CCceEEecchhhcccchHHHHHhcCceeeeeecceeecccccccchHHHhcccH
Confidence 366788899999999999999854 688999999888888888999999999999999999999999999999999999
Q ss_pred eEEeccCCCCCcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEccccccCCcCCCCCCCCCHH
Q 022158 139 KSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSS 218 (302)
Q Consensus 139 ~i~~~~~~~~~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~~~~~~~~~~~~ 218 (302)
+.+++..++...+..+.+|+.+++|+..+++..+||||+|++.|...+ .+..||||+++..+|++.||+.+.+.
T Consensus 85 kSVis~~SGakAD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~d------~~~aFTGDalLIRgCGRTDFQqG~~~ 158 (237)
T KOG0814|consen 85 KSVISSASGAKADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEHD------LRMAFTGDALLIRGCGRTDFQQGCPA 158 (237)
T ss_pred HHHhhhccccccccccCCCCEEEEccEEEEEecCCCCCCceEEEEecC------cceeeecceeEEeccCccchhccChH
Confidence 999999999999999999999999999999999999999999999754 67999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCCCCcccHHHHHHhCCCCcCCHHHHHHHHHhcCCCCCcccchhhhhhhhcCCCc
Q 022158 219 QLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEETFKSIMENLNLSYPKMIDIAVPANLVCGMQD 297 (302)
Q Consensus 219 ~~~~sl~~~l~~l~~~~~i~PgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (302)
.+++|+..++-.||.+.+|+|+|+|.|+..+++.+|++.||+++++.++|+++|++.+++||++++.++++||+||-+.
T Consensus 159 ~LyesVH~kIFTLP~d~~iYpaHdY~G~~~stV~EEk~~NPRLTk~~eeFv~IM~NLnL~yPk~Id~aVpanm~~g~~~ 237 (237)
T KOG0814|consen 159 SLYESVHSKIFTLPEDYLIYPAHDYKGFLVSTVWEEKNLNPRLTKSKEEFVKIMKNLNLPYPKQIDKAVPANMVCGKQH 237 (237)
T ss_pred HHHHHHhHHheeCCCceEEeeccccCceEeeehhhhhccCcccccCHHHHHHHHHhcCCCChhhhCcccchhhccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999763
No 3
>PLN02469 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=4.8e-36 Score=268.73 Aligned_cols=195 Identities=34% Similarity=0.546 Sum_probs=166.1
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCCC-CC
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG-SK 149 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~-~~ 149 (302)
..+++|||.++. +++++||||| ..+.+++.+++.+.++++|++||+|+||+||+..|++.+|+++||++.... ..
T Consensus 10 ~dNy~Yli~d~~--~~~~vlIDp~--~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~~~~~ 85 (258)
T PLN02469 10 EDNYAYLIIDES--TKDAAVVDPV--DPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLDNVKG 85 (258)
T ss_pred cceEEEEEEeCC--CCeEEEECCC--ChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEechhcCCC
Confidence 344599998742 3589999999 478889999999999999999999999999999999999999999987543 33
Q ss_pred cceeecCCCEEEeCC-eEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEccccccCCcCCCCCCCCCHHHHHHHHHHHH
Q 022158 150 ADLHVEHGDKVSFGD-LFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQI 228 (302)
Q Consensus 150 ~~~~~~~g~~~~lg~-~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~~~~~~~~~~~~~~~~sl~~~l 228 (302)
....+.+|+.+.+|+ ..++++++||||+||++|++.+. .++.++|||||++|.+++++ +++++..+|++|+++++
T Consensus 86 ~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~--~~~~~~lFtGDtLf~~g~Gr--~~~g~~~~~~~Sl~~~l 161 (258)
T PLN02469 86 CTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGK--EGEDPAVFTGDTLFIAGCGK--FFEGTAEQMYQSLCVTL 161 (258)
T ss_pred CCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccC--CCCCCEEEecCcccCCCcCC--CCCCCHHHHHHHHHHHH
Confidence 467899999999996 68999999999999999998641 12346999999999999988 46889999999997678
Q ss_pred hcCCCCeEEEcCCCCCCC--------------------------------CcccHHHHHHhCCCCcCCHHHHHHHHH
Q 022158 229 FTLPKDTLIYPAHDYKGF--------------------------------TVSTVGEEIQYNPRLTKDEETFKSIME 273 (302)
Q Consensus 229 ~~l~~~~~i~PgHg~~~~--------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 273 (302)
..|+++++|+|||||+.. .+++++.|+++|||++..+.++++.+.
T Consensus 162 ~~Lp~~t~vypGH~yt~~nl~Fa~~vep~n~~~~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~~~~~~~~~ 238 (258)
T PLN02469 162 GSLPKPTQVYCGHEYTVKNLKFALTVEPDNEKLKQKLEWAEKQRQAGLPTVPSTIEEELETNPFMRVDLPEIQEKVG 238 (258)
T ss_pred HcCCCCeEEEcCCCCchhHHHHHHhhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecCCCHHHHHHhc
Confidence 889989999999998642 377999999999999988888887664
No 4
>PLN02398 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=1.8e-34 Score=264.92 Aligned_cols=228 Identities=29% Similarity=0.416 Sum_probs=185.6
Q ss_pred ccCCcccccccCCCcCccccccccccCCCCCCeEEEEEeecCCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHc
Q 022158 29 TLLPHPVTKFKPLSQMDSYSTTTTSSSSSSSKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL 108 (302)
Q Consensus 29 ~~~~~~~~~~~p~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~ 108 (302)
.++.+|+++....+.......++..+. .+..|.+..+. ...++++|+|.++. ++.+++||||. .+.+++.+++.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ip-~l~dNy~Yli~d~~--t~~~~vVDP~~--a~~vl~~l~~~ 118 (329)
T PLN02398 45 KLLSMPLKTLRGAGRTLKVAQFCSVSN-VSSSLQIELVP-CLKDNYAYLLHDED--TGTVGVVDPSE--AVPVIDALSRK 118 (329)
T ss_pred HHHhCchhhccccchhhhhhhhhcccC-CCCCcEEEEEe-eeCceEEEEEEECC--CCEEEEEcCCC--HHHHHHHHHhc
Confidence 566778877776666666666654332 22235555433 35667899998743 46799999983 67788999999
Q ss_pred CCCeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCCC---CCcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEEC
Q 022158 109 GLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG---SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSG 185 (302)
Q Consensus 109 ~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~---~~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~ 185 (302)
+.++++|++||+|+||+||+..|++.+ +++||+++.+. ...+..+.+|+.+.+|+.+++++++||||+||++|++.
T Consensus 119 g~~L~~ILlTH~H~DH~GG~~~L~~~~-ga~V~g~~~~~~~i~~~d~~v~dGd~i~lgg~~l~vi~tPGHT~GhI~~~~~ 197 (329)
T PLN02398 119 NRNLTYILNTHHHYDHTGGNLELKARY-GAKVIGSAVDKDRIPGIDIVLKDGDKWMFAGHEVLVMETPGHTRGHISFYFP 197 (329)
T ss_pred CCCceEEEECCCCchhhCCHHHHHHhc-CCEEEEehHHhhhccCCcEEeCCCCEEEECCeEEEEEeCCCcCCCCEEEEEC
Confidence 999999999999999999999999988 79999987632 23567899999999999999999999999999999984
Q ss_pred CCCCCCCCcEEEEccccccCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCC--------------------
Q 022158 186 EGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKG-------------------- 245 (302)
Q Consensus 186 ~~~~~~~~~vlftGD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~i~PgHg~~~-------------------- 245 (302)
+.++||+||++|.+++++. +.++.++|++|++ ++.+|++++.|+|||||+.
T Consensus 198 ------~~~vLFtGDtLf~~g~Gr~--feg~~~~~~~SL~-rL~~L~~~t~VypGHgyt~~Nl~Fa~~vep~n~~l~~~~ 268 (329)
T PLN02398 198 ------GSGAIFTGDTLFSLSCGKL--FEGTPEQMLSSLQ-KIISLPDDTNIYCGHEYTLSNSKFALSIEPNNEVLQSYA 268 (329)
T ss_pred ------CCCEEEECCCcCCCCcCCC--CCCCHHHHHHHHH-HHHcCCCCeEEECCCCChhcchhhHhhhCCChHHHHHHH
Confidence 3579999999999988874 6789999999996 9999999889999999853
Q ss_pred ------------CCcccHHHHHHhCCCCcCCHHHHHHHH
Q 022158 246 ------------FTVSTVGEEIQYNPRLTKDEETFKSIM 272 (302)
Q Consensus 246 ------------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 272 (302)
..+++++.|++.|||++..+.++++.+
T Consensus 269 ~~v~~~r~~~~~t~Pstl~~E~~~NPFlR~~~~~v~~~~ 307 (329)
T PLN02398 269 AHVAHLRSKGLPTIPTTVKMEKACNPFLRTSSTDIRKSL 307 (329)
T ss_pred HHHHHHHHcCCCcCCccHHHHHhhCCeecCCCHHHHHHh
Confidence 167899999999999998878777655
No 5
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=100.00 E-value=6.4e-33 Score=247.99 Aligned_cols=188 Identities=31% Similarity=0.448 Sum_probs=163.1
Q ss_pred CCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCCCC-
Q 022158 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS- 148 (302)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~- 148 (302)
...+++|++.++ +++++|||||. .+.+++.+++.+.++++|++||.|+||+||+..|++.+|+++||++.....
T Consensus 9 ~~dNy~~li~~~---~~~~ilIDpg~--~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~~ 83 (251)
T PRK10241 9 FDDNYIWVLNDE---AGRCLIVDPGE--AEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDK 83 (251)
T ss_pred ecceEEEEEEcC---CCcEEEECCCC--hHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEeccccccc
Confidence 456778999874 46799999994 577889999999999999999999999999999999998899999865432
Q ss_pred CcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEccccccCCcCCCCCCCCCHHHHHHHHHHHH
Q 022158 149 KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQI 228 (302)
Q Consensus 149 ~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~~~~~~~~~~~~~~~~sl~~~l 228 (302)
.....+.+|+.+.+++..++++++||||+||++|+.+ .++||||+++.+++++. +.++..+|++|++ ++
T Consensus 84 ~~~~~v~~g~~i~ig~~~~~vi~tPGHT~ghi~~~~~--------~~lFtGDtlf~~g~gr~--f~g~~~~~~~Sl~-kl 152 (251)
T PRK10241 84 GTTQVVKDGETAFVLGHEFSVFATPGHTLGHICYFSK--------PYLFCGDTLFSGGCGRL--FEGTASQMYQSLK-KI 152 (251)
T ss_pred CCceEeCCCCEEEeCCcEEEEEEcCCCCccceeeecC--------CcEEEcCeeccCCcCCC--CCCCHHHHHHHHH-HH
Confidence 3457789999999999999999999999999999742 47999999999998884 5789999999996 99
Q ss_pred hcCCCCeEEEcCCCCCC--------------------------------CCcccHHHHHHhCCCCcCCHHHHHHHHH
Q 022158 229 FTLPKDTLIYPAHDYKG--------------------------------FTVSTVGEEIQYNPRLTKDEETFKSIME 273 (302)
Q Consensus 229 ~~l~~~~~i~PgHg~~~--------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 273 (302)
.+|+++++|||||||+. ..+++++.|++.|||++....++++.+.
T Consensus 153 ~~l~~~t~i~pgH~y~~~n~~fa~~~~p~n~~l~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~~~~~~~~~ 229 (251)
T PRK10241 153 NALPDDTLICCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINLFLRTEDIDLINVIN 229 (251)
T ss_pred HcCCCCEEEECCCCChhhhHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecCCCHHHHHHhc
Confidence 99999999999999753 1677999999999999988888877664
No 6
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=100.00 E-value=1.1e-32 Score=246.02 Aligned_cols=188 Identities=35% Similarity=0.559 Sum_probs=162.3
Q ss_pred CCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCCC-C
Q 022158 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG-S 148 (302)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~-~ 148 (302)
...+++|+|.++ +++++|||||. ...+++.+++.+.++++|++||.|+||+||+..+++.++ ++||+++... .
T Consensus 7 ~~dN~~yli~~~---~~~~ilID~g~--~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~-~~V~~~~~~~~~ 80 (248)
T TIGR03413 7 LSDNYIWLLHDP---DGQAAVVDPGE--AEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFP-APVYGPAEERIP 80 (248)
T ss_pred cccEEEEEEEcC---CCCEEEEcCCC--hHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCC-CeEEecccccCC
Confidence 466789999884 34899999994 567889999999999999999999999999999999985 9999987652 2
Q ss_pred CcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEccccccCCcCCCCCCCCCHHHHHHHHHHHH
Q 022158 149 KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQI 228 (302)
Q Consensus 149 ~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~~~~~~~~~~~~~~~~sl~~~l 228 (302)
.....+.+|+.+.+|+..++++++||||+|+++|++. +.++||+||+++..++++. ..++..+|++|++ ++
T Consensus 81 ~~~~~v~~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~------~~~~lftGDtl~~~g~g~~--~~~~~~~~~~Sl~-~l 151 (248)
T TIGR03413 81 GITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLP------DSPALFCGDTLFSAGCGRL--FEGTPEQMYDSLQ-RL 151 (248)
T ss_pred CCcEEeCCCCEEEECCEEEEEEECCCCCcccEEEEEC------CCCEEEEcCccccCCcCCC--CCCCHHHHHHHHH-HH
Confidence 3467889999999999999999999999999999984 3579999999999888874 5789999999996 99
Q ss_pred hcCCCCeEEEcCCCCCC--------------------------------CCcccHHHHHHhCCCCcCCHHHHHHHH
Q 022158 229 FTLPKDTLIYPAHDYKG--------------------------------FTVSTVGEEIQYNPRLTKDEETFKSIM 272 (302)
Q Consensus 229 ~~l~~~~~i~PgHg~~~--------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 272 (302)
.+++++++|+|||||.. ..+++++.|++.|||++....++++.+
T Consensus 152 ~~l~~~~~i~pGH~~~~~n~~fa~~~~p~~~~l~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~~~~~~~~ 227 (248)
T TIGR03413 152 AALPDDTLVYCAHEYTLSNLRFALTVEPDNPALQERLKEVEALRAQGQPTLPSTLGLERATNPFLRADDPAVRAAL 227 (248)
T ss_pred HcCCCCeEEECCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHhhCCeecCCCHHHHHHh
Confidence 99999888999999743 168899999999999998777777655
No 7
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.97 E-value=2.3e-30 Score=227.72 Aligned_cols=194 Identities=34% Similarity=0.548 Sum_probs=159.0
Q ss_pred eecCCCcEEEEEEe-cCCCCCcEEEEcCCCCChHHHHHHHHH---cCCCeeEEecCCCCcCccCChHHHHhhCC-CCeEE
Q 022158 67 FEKESSTYTYLLAD-VNHPDKPALLIDPVDKTVDRDLNVIKE---LGLKLVYAMNTHVHADHVTGTGLIKSKVP-GVKSI 141 (302)
Q Consensus 67 ~~~~~~~~~yli~~-~~~~~~~~iLID~G~~~~~~l~~~l~~---~~~~i~~I~~TH~H~DH~gg~~~l~~~~p-~~~i~ 141 (302)
.....++++||+.+ .. ...+.++||+. .+.+...+++ .+.++.+||.||+|+||+||+..|.+.+| +++++
T Consensus 7 ~~~~~~Ny~YLl~~~~~--~~~a~~vDP~~--pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~ 82 (265)
T KOG0813|consen 7 LPTLQDNYMYLLGDGDK--TIDADLVDPAE--PEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVI 82 (265)
T ss_pred ccccCCceEEEEecccc--eeeeeeecCcc--hHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEe
Confidence 34567889999998 22 34566777763 5666666666 67889999999999999999999999865 88899
Q ss_pred ecc-CCCCCcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEccccccCCcCCCCCCCCCHHHH
Q 022158 142 ISK-ASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQL 220 (302)
Q Consensus 142 ~~~-~~~~~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~~~~~~~~~~~~~~ 220 (302)
.+. .........+.+|+.+.++|.+|++++|||||.||+||++.. ..+.+.+||||++|..++++ ++.++.++|
T Consensus 83 g~~~~r~~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~---~~~e~~iFtGDtlf~~GcG~--~FEgt~~~M 157 (265)
T KOG0813|consen 83 GGADDRIPGITRGLKDGETVTVGGLEVRCLHTPGHTAGHICYYVTE---STGERAIFTGDTLFGAGCGR--FFEGTAEQM 157 (265)
T ss_pred cCChhcCccccccCCCCcEEEECCEEEEEEeCCCccCCcEEEEeec---CCCCCeEEeCCceeecCccc--hhcCCHHHH
Confidence 884 344455677999999999999999999999999999999974 24678999999999999997 688899999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCCC---------------------------------CcccHHHHHHhCCCCcCCHHH
Q 022158 221 YKSVHSQIFTLPKDTLIYPAHDYKGF---------------------------------TVSTVGEEIQYNPRLTKDEET 267 (302)
Q Consensus 221 ~~sl~~~l~~l~~~~~i~PgHg~~~~---------------------------------~~~~~~~~~~~~~~l~~~~~~ 267 (302)
..++. .+..|++++.|||||+|... .+.++++++.+|||++...+.
T Consensus 158 ~~sl~-~l~~L~~~t~iypGHeYt~~n~kf~~~ve~~n~~~q~~l~~~~~~~~~~~~t~~p~tl~~e~~~Npf~r~~~~~ 236 (265)
T KOG0813|consen 158 DSSLN-ELIALPDDTRIYPGHEYTKSNLKFARYVEPRNEVEQEKLDWLVERRSKEKPTMVPSTLGEEKLYNPFMRLKKEK 236 (265)
T ss_pred HHhHH-HhhcCCCCceEccCcccccccceeeeecccccHHHHHHHHHHHHHhhccCcccChhhHHHHHhcCchhhcchHh
Confidence 99996 49999999999999998541 347888899999999865544
Q ss_pred HHH
Q 022158 268 FKS 270 (302)
Q Consensus 268 ~~~ 270 (302)
+.+
T Consensus 237 v~k 239 (265)
T KOG0813|consen 237 VQK 239 (265)
T ss_pred hhh
Confidence 443
No 8
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.91 E-value=2.1e-23 Score=198.14 Aligned_cols=125 Identities=22% Similarity=0.254 Sum_probs=102.5
Q ss_pred cCCCcEEEEEEecCCCCCcEEEEcCCC-CChHHHHHHHHHc-CC-CeeEEecCCCCcCccCChHHHHhhCCCCeEEeccC
Q 022158 69 KESSTYTYLLADVNHPDKPALLIDPVD-KTVDRDLNVIKEL-GL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (302)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~iLID~G~-~~~~~l~~~l~~~-~~-~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~ 145 (302)
.+...|+|+|.+ ++.+|||||. ...+.+++.+++. +. ++++|++||.|+||+||+..+.+.+|++++++++.
T Consensus 29 ~g~~~NsyLI~~-----~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~~~ 103 (394)
T PRK11921 29 RGSSYNSYLIKD-----EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTKN 103 (394)
T ss_pred CceEEEEEEEeC-----CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEECHH
Confidence 345679999976 5689999984 3456677777653 43 58999999999999999999999999999999864
Q ss_pred CC---------CCcceeecCCCEEEeCCeEEEEEEcCC-CCCCCEEEEECCCCCCCCCcEEEEcccccc
Q 022158 146 SG---------SKADLHVEHGDKVSFGDLFLEVRATPG-HTLGCVTYVSGEGPDQPQPRMAFTGDALLI 204 (302)
Q Consensus 146 ~~---------~~~~~~~~~g~~~~lg~~~i~~i~~pG-Ht~g~~~~~~~~~~~~~~~~vlftGD~l~~ 204 (302)
.. ......+++|+.+.+|+.+++++++|| |+||+++++++ +.++|||||++-.
T Consensus 104 ~~~~l~~~~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~------~~~vLFsgD~fG~ 166 (394)
T PRK11921 104 GAKSLKGHYHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLT------GDNILFSNDAFGQ 166 (394)
T ss_pred HHHHHHHHhCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEc------CCCEEEecCcccc
Confidence 31 113467889999999999999999998 99999999974 5689999998644
No 9
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.88 E-value=1.8e-21 Score=171.63 Aligned_cols=163 Identities=34% Similarity=0.519 Sum_probs=124.9
Q ss_pred CCCcEEEEEEecCCCCC-cEEEEcCCCCC--hHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCC
Q 022158 70 ESSTYTYLLADVNHPDK-PALLIDPVDKT--VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (302)
Q Consensus 70 ~~~~~~yli~~~~~~~~-~~iLID~G~~~--~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 146 (302)
...++++++.. ++ ..+|||+|... ...+.+.+.+.+.++++|++||.|.||+||+..+.+.++.++++..+..
T Consensus 22 ~~~~~~~~~~~----~~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~ 97 (252)
T COG0491 22 LSGNSVYLLVD----GEGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEV 97 (252)
T ss_pred cccccEEEEEc----CCCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchh
Confidence 34455666666 34 79999999655 5778888898888999999999999999999999988744677333211
Q ss_pred ----------------------CCCcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEcccccc
Q 022158 147 ----------------------GSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLI 204 (302)
Q Consensus 147 ----------------------~~~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~~ 204 (302)
.......+.+++.+.+++..++++++||||+||++|++++ .+++|+||+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~------~~~l~~gD~~~~ 171 (252)
T COG0491 98 PLLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLED------GGVLFTGDTLFA 171 (252)
T ss_pred hhhhhcccccccccccccCCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECC------ccEEEecceecc
Confidence 0122345668999999999999999999999999999965 349999999998
Q ss_pred CC--cCCCCCCCCCHHHHHHHHHHHHhcCCC-CeEEEcCCCC
Q 022158 205 RG--CGRTDFQGGSSSQLYKSVHSQIFTLPK-DTLIYPAHDY 243 (302)
Q Consensus 205 ~~--~~~~~~~~~~~~~~~~sl~~~l~~l~~-~~~i~PgHg~ 243 (302)
.. .+.......+...++++++ ++..+.. ...++||||+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~v~pgHg~ 212 (252)
T COG0491 172 GDTGVGRLDLPGGDAAQLLASLR-RLLLLLLPDTLVLPGHGP 212 (252)
T ss_pred CCCCCccccCCCCCHHHHHHHHH-HHHhccCCCCEEECCCCc
Confidence 75 4444444455889999996 6555443 3699999994
No 10
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.88 E-value=8.2e-22 Score=191.02 Aligned_cols=125 Identities=21% Similarity=0.243 Sum_probs=101.0
Q ss_pred cCCCcEEEEEEecCCCCCcEEEEcCCCC-ChHHHHHHHHHc-CC-CeeEEecCCCCcCccCChHHHHhhCCCCeEEeccC
Q 022158 69 KESSTYTYLLADVNHPDKPALLIDPVDK-TVDRDLNVIKEL-GL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (302)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~iLID~G~~-~~~~l~~~l~~~-~~-~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~ 145 (302)
.+...|+|||.+ ++.+|||||.. ....+++.+++. +. ++++|++||.|.||+||++.|.+.+|+++|++++.
T Consensus 31 ~G~t~NsYLI~~-----~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~ 105 (479)
T PRK05452 31 RGSSYNSYLIRE-----EKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTAN 105 (479)
T ss_pred CCcEEEEEEEEC-----CCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCEEEECHH
Confidence 445679999986 57899999843 356677777643 32 68999999999999999999999999999999864
Q ss_pred CC----------CCcceeecCCCEEEeC-CeEEEEEEcCC-CCCCCEEEEECCCCCCCCCcEEEEcccccc
Q 022158 146 SG----------SKADLHVEHGDKVSFG-DLFLEVRATPG-HTLGCVTYVSGEGPDQPQPRMAFTGDALLI 204 (302)
Q Consensus 146 ~~----------~~~~~~~~~g~~~~lg-~~~i~~i~~pG-Ht~g~~~~~~~~~~~~~~~~vlftGD~l~~ 204 (302)
.. ......+++|+.+.+| +.+++++++|| |+||++++++. +.++|||||++-.
T Consensus 106 ~~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~------~~~vLFsgD~fG~ 170 (479)
T PRK05452 106 AIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLT------GDAVLFSNDAFGQ 170 (479)
T ss_pred HHHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEc------CCCEEEecccccC
Confidence 31 1123678899999999 47999999997 99999999974 5699999997643
No 11
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.84 E-value=1.5e-19 Score=152.24 Aligned_cols=159 Identities=29% Similarity=0.450 Sum_probs=123.3
Q ss_pred CCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCC-CeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCCC-
Q 022158 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG- 147 (302)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~-~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~- 147 (302)
...++||+|.. +++.+|||||......+++.+++.+. ++++|++||.|.||++|+..+.+. +++++|+++...
T Consensus 3 ~~~~~~~li~~----~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-~~~~i~~~~~~~~ 77 (183)
T smart00849 3 GVGVNSYLVEG----DGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-PGAPVYAPEGTAE 77 (183)
T ss_pred ccceeEEEEEe----CCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC-CCCcEEEchhhhH
Confidence 46788999998 68899999995444456666777754 589999999999999999999887 588999876432
Q ss_pred ------------------CCcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEccccccCCc-C
Q 022158 148 ------------------SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGC-G 208 (302)
Q Consensus 148 ------------------~~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~-~ 208 (302)
......+..++.+.+++.+++++++|||++++++++++ +.+++|+||+.+.... .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~------~~~vl~~gD~~~~~~~~~ 151 (183)
T smart00849 78 LLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLP------EGKILFTGDLLFSGGIGR 151 (183)
T ss_pred HHhccchhccccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEEC------CCCEEEECCeeeccCCCC
Confidence 11235678899999999999999999999999999984 4789999999987663 2
Q ss_pred CC-CCCCCCHHHHHHHHHHHHhcCCCCeEEEcCC
Q 022158 209 RT-DFQGGSSSQLYKSVHSQIFTLPKDTLIYPAH 241 (302)
Q Consensus 209 ~~-~~~~~~~~~~~~sl~~~l~~l~~~~~i~PgH 241 (302)
.. .........+.+.++ ++...... +++|||
T Consensus 152 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~H 183 (183)
T smart00849 152 TDDDGGDASASDSLESLL-KLLALDPE-LVVPGH 183 (183)
T ss_pred cccCCCCccHHHHHHHHH-HhhcCCcc-EeecCC
Confidence 21 122345667788885 67676655 799998
No 12
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.82 E-value=7.3e-20 Score=154.03 Aligned_cols=161 Identities=22% Similarity=0.267 Sum_probs=117.6
Q ss_pred cCCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHH---HHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEeccC
Q 022158 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLN---VIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (302)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~---~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~ 145 (302)
++.++|||+|.. +++.+|||||......... .......++++||+||.|.||+||+..|.+.++...++....
T Consensus 2 ~~~~~n~~li~~----~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~ 77 (194)
T PF00753_consen 2 GEGGSNSYLIEG----GDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSAD 77 (194)
T ss_dssp SSEEEEEEEEEE----TTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHH
T ss_pred CCeeEEEEEEEE----CCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeecccc
Confidence 356789999998 7999999999643332222 233345579999999999999999999999985554444332
Q ss_pred CC-------------------CCcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEccccccCC
Q 022158 146 SG-------------------SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRG 206 (302)
Q Consensus 146 ~~-------------------~~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~~~~ 206 (302)
.. ...............++..+.+...++|+++++++++ ++.++||+||+++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~vlftGD~~~~~~ 151 (194)
T PF00753_consen 78 AAKAIRPPDRDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYL------PGGKVLFTGDLLFSNE 151 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEE------TTTTEEEEETTSCTTT
T ss_pred ccccccccccccccccccccccccceeeecccccccccccccceeccccCCcceEEEe------CCCcEEEeeeEeccCC
Confidence 11 0111233445556667788888999999999999997 4679999999998766
Q ss_pred cCCCCC----------CCCCHHHHHHHHHHHHhcCCCCeEEEcCC
Q 022158 207 CGRTDF----------QGGSSSQLYKSVHSQIFTLPKDTLIYPAH 241 (302)
Q Consensus 207 ~~~~~~----------~~~~~~~~~~sl~~~l~~l~~~~~i~PgH 241 (302)
...... ...+...+.++++ ++.+++++ .++|||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~-~ii~gH 194 (194)
T PF00753_consen 152 HPNPDPDLPLRGADVRYGSNWEESIEALR-RLEALDPE-VIIPGH 194 (194)
T ss_dssp SSSSSTSHTTTTHTTSHTTHHHHHHHHHH-HHHTSTTS-EEEESS
T ss_pred ccccccccccccccccCcHHHHHHHHHHH-HHHCCCCC-EEEeCc
Confidence 554433 2345677888885 99999988 778899
No 13
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.79 E-value=1.7e-18 Score=160.39 Aligned_cols=200 Identities=20% Similarity=0.277 Sum_probs=141.9
Q ss_pred cCCCcEEEEEEecCCCCCcEEEEcCC-CCChHHHHHHHHHc-CC-CeeEEecCCCCcCccCChHHHHhhCCCCeEEeccC
Q 022158 69 KESSTYTYLLADVNHPDKPALLIDPV-DKTVDRDLNVIKEL-GL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (302)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~iLID~G-~~~~~~l~~~l~~~-~~-~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~ 145 (302)
.+...|+|||.+ ++.+||||+ ....+.+++.+++. +. ++|+|+++|..+||+|+++.+.+.+|+++|++++.
T Consensus 32 ~GttyNSYLI~~-----~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~ 106 (388)
T COG0426 32 RGTTYNSYLIVG-----DKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSKL 106 (388)
T ss_pred CCceeeeEEEeC-----CcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeHH
Confidence 456779999996 889999996 45577788888875 33 49999999999999999999999999999999974
Q ss_pred CC-------C--CcceeecCCCEEEeCCeEEEEEEcC-CCCCCCEEEEECCCCCCCCCcEEEEccccccCCcCCCCCCCC
Q 022158 146 SG-------S--KADLHVEHGDKVSFGDLFLEVRATP-GHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGG 215 (302)
Q Consensus 146 ~~-------~--~~~~~~~~g~~~~lg~~~i~~i~~p-GHt~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~~~~~~~~~ 215 (302)
.. . .....++.|+.+++||.+++++.+| =|+||+++.+. +..++|||+|++-...+... .+..
T Consensus 107 ~~~~L~~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd------~~~kILFS~D~fG~h~~~~~-~fde 179 (388)
T COG0426 107 AARFLKGFYHDPEWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYD------PEDKILFSCDAFGAHVCDDY-RFDE 179 (388)
T ss_pred HHHHHHHhcCCccceeecCCCCEeccCCcEEEEEeCCCCCCCCceeEee------cCCcEEEccccccccccchh-cccc
Confidence 21 1 1157899999999999999999998 59999999995 56799999998754444431 2222
Q ss_pred CHHH-------HHHH-----------HHHHHhcCCCCeEEEcCCCCCCCCcccHHHHHHhCCCCcCCHHHHHHHHHhcCC
Q 022158 216 SSSQ-------LYKS-----------VHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEETFKSIMENLNL 277 (302)
Q Consensus 216 ~~~~-------~~~s-----------l~~~l~~l~~~~~i~PgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 277 (302)
+..+ |+.. ..+++..++.+ .|+|||| +.++..-.++......|..
T Consensus 180 d~~~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~-~IaP~HG----------------~i~~~~~~~i~~~Y~~W~~ 242 (388)
T COG0426 180 DIEELLPDMRKYYANLMAPNARLVLWALKKIKLLKIE-MIAPSHG----------------PIWRGNPKEIVEAYRDWAE 242 (388)
T ss_pred CHHHHHHHHHHHHHHhhcccHHHHHHHHhhhcccCcc-EEEcCCC----------------ceeeCCHHHHHHHHHHHHc
Confidence 2222 2221 12244445555 9999999 4555555566665666555
Q ss_pred CCCcccchhhhhhhhcCCCcc
Q 022158 278 SYPKMIDIAVPANLVCGMQDL 298 (302)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~ 298 (302)
..++- ...+.+.-.+|.++.
T Consensus 243 ~~~~~-~V~l~Y~smyg~T~~ 262 (388)
T COG0426 243 GQPKG-KVDLIYDSMYGNTEK 262 (388)
T ss_pred cCCcc-eEEEEEecccCCHHH
Confidence 55444 333344444444443
No 14
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.73 E-value=1.1e-16 Score=132.40 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=102.6
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCCCC--
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS-- 148 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~-- 148 (302)
.+-|+|+... .++.|+|||-. ......+.+.+.| .+++|++|| .||+..+..+++.| +++||++..+..
T Consensus 21 ~dfng~~~~~----p~GnilIDP~~-ls~~~~~~l~a~g-gv~~IvLTn--~dHvR~A~~ya~~~-~a~i~~p~~d~~~~ 91 (199)
T PF14597_consen 21 LDFNGHAWRR----PEGNILIDPPP-LSAHDWKHLDALG-GVAWIVLTN--RDHVRAAEDYAEQT-GAKIYGPAADAAQF 91 (199)
T ss_dssp EEEEEEEE------TT--EEES------HHHHHHHHHTT---SEEE-SS--GGG-TTHHHHHHHS---EEEEEGGGCCC-
T ss_pred cCceeEEEEc----CCCCEEecCcc-ccHHHHHHHHhcC-CceEEEEeC--ChhHhHHHHHHHHh-CCeeeccHHHHhhC
Confidence 4457888888 58899999974 4555668888876 589999996 69999999999999 999999987653
Q ss_pred --CcceeecCCCEEEeCCeEEEEEEcCC-CCCCCEEEEECCCCCCCCCcEEEEccccccCCcCCCCC-C---CCCHHHHH
Q 022158 149 --KADLHVEHGDKVSFGDLFLEVRATPG-HTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDF-Q---GGSSSQLY 221 (302)
Q Consensus 149 --~~~~~~~~g~~~~lg~~~i~~i~~pG-Ht~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~~~~~~-~---~~~~~~~~ 221 (302)
..+.++.+|+++ ++| +++++.|| ||+|.+++++++ ++||+||++.....+...+ + -.|..++.
T Consensus 92 p~~~D~~l~dge~i-~~g--~~vi~l~G~ktpGE~ALlled-------~vLi~GDl~~~~~~g~l~lLpd~k~~d~~~a~ 161 (199)
T PF14597_consen 92 PLACDRWLADGEEI-VPG--LWVIHLPGSKTPGELALLLED-------RVLITGDLLRSHPAGSLSLLPDEKLYDPTEAR 161 (199)
T ss_dssp SS--SEEE-TT-BS-STT--EEEEEE-SSSSTTEEEEEETT-------TEEEESSSEEBSSTTS-EE--GGG-S-HHHHH
T ss_pred CCCCccccccCCCc-cCc--eEEEEcCCCCCCceeEEEecc-------ceEEecceeeecCCCCeEECChHHcCCHHHHH
Confidence 457899999955 444 88999999 999999999964 5999999886654443222 2 25889999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCC
Q 022158 222 KSVHSQIFTLPKDTLIYPAHDY 243 (302)
Q Consensus 222 ~sl~~~l~~l~~~~~i~PgHg~ 243 (302)
+|++ ||.+++.--.|++|||.
T Consensus 162 ~sl~-RLa~~~~fe~lLvGdGw 182 (199)
T PF14597_consen 162 ASLR-RLAAYPDFEWLLVGDGW 182 (199)
T ss_dssp HHHH-HHHT-TT--EEEESBB-
T ss_pred HHHH-HHhccccccEEeecCCc
Confidence 9996 99999644489999996
No 15
>PRK11539 ComEC family competence protein; Provisional
Probab=99.68 E-value=3.7e-16 Score=159.48 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=117.2
Q ss_pred EEEeecCCCcEEEEEEecCCCCCcEEEEcCCCC-----C-hHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCC
Q 022158 64 RQTFEKESSTYTYLLADVNHPDKPALLIDPVDK-----T-VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPG 137 (302)
Q Consensus 64 ~~~~~~~~~~~~yli~~~~~~~~~~iLID~G~~-----~-~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~ 137 (302)
+..+.+.+++.+.+|+. +++++|||+|.. . .+.+.++++..|.++|+|++||.|.||+||+..+.+.+|.
T Consensus 502 ~v~~lDVGqG~a~li~~----~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~~ 577 (755)
T PRK11539 502 RVDMLDVGHGLAVVIER----NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWPM 577 (755)
T ss_pred EEEEEEccCceEEEEEE----CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCCc
Confidence 44455667777888887 689999999852 1 3557799999999999999999999999999999999998
Q ss_pred CeEEeccCCCCCcceeecCCCEEEeCCeEEEEEEcCCCC-----CCCEEEEECCCCCCCCCcEEEEccccccCCcCCCCC
Q 022158 138 VKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHT-----LGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDF 212 (302)
Q Consensus 138 ~~i~~~~~~~~~~~~~~~~g~~~~lg~~~i~~i~~pGHt-----~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~~~~~~ 212 (302)
.+++.+.... .......|+.+..++.++++++.++|. ++++++.++. ++.++|||||.-
T Consensus 578 ~~i~~~~~~~--~~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~----~~~~~LltGDi~---------- 641 (755)
T PRK11539 578 AWIRSPLNWA--NHLPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDD----GKHSILLTGDLE---------- 641 (755)
T ss_pred ceeeccCccc--CcccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEE----CCEEEEEEeCCC----------
Confidence 9998764222 123467899999999999999988764 5588888875 578899999942
Q ss_pred CCCCHHHHHHHHHHHH-hcCCCCeEEEcCCC
Q 022158 213 QGGSSSQLYKSVHSQI-FTLPKDTLIYPAHD 242 (302)
Q Consensus 213 ~~~~~~~~~~sl~~~l-~~l~~~~~i~PgHg 242 (302)
. +...+-+ +.. ..++.+++++|+||
T Consensus 642 -~---~~E~~Ll-~~~~~~l~~dvL~vpHHG 667 (755)
T PRK11539 642 -A---QAEQKLL-SRYWQQLAATLLQVPHHG 667 (755)
T ss_pred -h---HHHHHHH-hcCccCcCCCEEEeCCCC
Confidence 1 1111112 121 24677889999999
No 16
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.68 E-value=6.8e-16 Score=148.11 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=100.4
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCCChH-HH---------HHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeE
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDKTVD-RD---------LNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKS 140 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~~~~-~l---------~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i 140 (302)
.++|||++.. ++..+|||||....+ .+ .+++++...++++||+||.|.||++|++.+...++.++|
T Consensus 12 iG~n~~ll~~----~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~V 87 (422)
T TIGR00649 12 IGKNMYVVEI----DDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPI 87 (422)
T ss_pred cCCeEEEEEE----CCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeE
Confidence 4889999998 688999999953211 11 245666566799999999999999999999887755789
Q ss_pred EeccCCC--------------CCcceeecCCCEEEeC-CeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEccccccC
Q 022158 141 IISKASG--------------SKADLHVEHGDKVSFG-DLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIR 205 (302)
Q Consensus 141 ~~~~~~~--------------~~~~~~~~~g~~~~lg-~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~~~ 205 (302)
|+++.+. ......+..++.+++| +.+++++++++|.+|+++|.++. ++++++||||+.+.+
T Consensus 88 y~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~----~~~~ivytGD~~~~~ 163 (422)
T TIGR00649 88 YGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHT----PLGYIVYTGDFKFDN 163 (422)
T ss_pred EeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEe----CCcEEEECCCcCCCC
Confidence 9886431 1123568889999997 59999999998899999999964 467899999997743
No 17
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.63 E-value=2.4e-14 Score=144.47 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=117.1
Q ss_pred EEEeecCCCcEEEEEEecCCCCCcEEEEcCCCCC------hHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCC
Q 022158 64 RQTFEKESSTYTYLLADVNHPDKPALLIDPVDKT------VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPG 137 (302)
Q Consensus 64 ~~~~~~~~~~~~yli~~~~~~~~~~iLID~G~~~------~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~ 137 (302)
+..+-+.+++.+.+|+. +++.+|||+|... ...+.+++++.|.++|+|++||.|.||+||+..+.+.+|.
T Consensus 441 ~v~~lDVGqGdaili~~----~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~v 516 (662)
T TIGR00361 441 QVDMLDVGQGLAMFIGA----NGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHPV 516 (662)
T ss_pred EEEEEecCCceEEEEEE----CCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCCc
Confidence 44556677778889988 5789999999521 2457899999999999999999999999999999999988
Q ss_pred CeEEeccCCC--CCcceeecCCCEEEeCCeEEEEEEcCC-----CCCCCEEEEECCCCCCCCCcEEEEccccccCCcCCC
Q 022158 138 VKSIISKASG--SKADLHVEHGDKVSFGDLFLEVRATPG-----HTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRT 210 (302)
Q Consensus 138 ~~i~~~~~~~--~~~~~~~~~g~~~~lg~~~i~~i~~pG-----Ht~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~~~~ 210 (302)
.+++.++... ......+..|+.+.+++.++++++.+. ....++++.++. ++.++|||||+-.
T Consensus 517 ~~i~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~----~~~~~L~tGD~~~------- 585 (662)
T TIGR00361 517 KRLVIPKGFVEEGVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDD----GGNSWLLTGDLEA------- 585 (662)
T ss_pred cEEEeccchhhCCCceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEE----CCeeEEEecCCCH-------
Confidence 8888765421 123456888999999999999997532 234577888765 5789999999631
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCC
Q 022158 211 DFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHD 242 (302)
Q Consensus 211 ~~~~~~~~~~~~sl~~~l~~l~~~~~i~PgHg 242 (302)
..+ +.+.+....++.+++.+|+||
T Consensus 586 -----~~E---~~l~~~~~~l~~dvLk~~HHG 609 (662)
T TIGR00361 586 -----EGE---QEVMRVFPNIKADVLQVGHHG 609 (662)
T ss_pred -----HHH---HHHHhcccCcCccEEEeCCCC
Confidence 111 122222345677889999999
No 18
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.56 E-value=2e-13 Score=123.67 Aligned_cols=205 Identities=16% Similarity=0.130 Sum_probs=139.0
Q ss_pred EEEEeecCCCcEEEEEEecCCCCCcEEEEcCCC-CChHHHHHHHHHcCCC-eeEEecCCCCcCccCChHHHHhhCCCCeE
Q 022158 63 FRQTFEKESSTYTYLLADVNHPDKPALLIDPVD-KTVDRDLNVIKELGLK-LVYAMNTHVHADHVTGTGLIKSKVPGVKS 140 (302)
Q Consensus 63 ~~~~~~~~~~~~~yli~~~~~~~~~~iLID~G~-~~~~~l~~~l~~~~~~-i~~I~~TH~H~DH~gg~~~l~~~~p~~~i 140 (302)
.+..+.+.+++.+.+++. ++..+++|+|. .....++++|++.|++ ||.+++||.|.||+||+..+.+.++--++
T Consensus 44 ~~~~~lDvGqg~a~li~~----~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~ 119 (293)
T COG2333 44 WKVHMLDVGQGLATLIRS----EGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPEL 119 (293)
T ss_pred ceEEEEEcCCCeEEEEee----CCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcE
Confidence 344566677777888888 57799999996 2456688999999997 99999999999999999999997655566
Q ss_pred EeccCCCC----------CcceeecCCCEEEeCCeEEEEEEcCCCC-----CCCEEEEECCCCCCCCCcEEEEccccccC
Q 022158 141 IISKASGS----------KADLHVEHGDKVSFGDLFLEVRATPGHT-----LGCVTYVSGEGPDQPQPRMAFTGDALLIR 205 (302)
Q Consensus 141 ~~~~~~~~----------~~~~~~~~g~~~~lg~~~i~~i~~pGHt-----~g~~~~~~~~~~~~~~~~vlftGD~l~~~ 205 (302)
++...... ........|+.+.+++..++++..++.. ..+++++++. .+.++|||||.-
T Consensus 120 ~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~----g~~s~LlTGD~e--- 192 (293)
T COG2333 120 WIYAGSDSTSTFVLRDAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTF----GGNSFLLTGDLE--- 192 (293)
T ss_pred EEeCCCCccchhhhhhcCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEe----CCeeEEEecCCC---
Confidence 66554432 3456788899999999999999877543 3588888876 688999999963
Q ss_pred CcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCCCCcccHHHHHHhCCCCcCCHHHHHHHHHhcCCCCCcccch
Q 022158 206 GCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEETFKSIMENLNLSYPKMIDI 285 (302)
Q Consensus 206 ~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~i~PgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 285 (302)
.. .+ +.+.+....|..+++.+++||- ...++.....+.+|-+.--. ....++++.+..+++.+
T Consensus 193 --------~~--~E--~~l~~~~~~l~~dVLkV~HHGS--~tSss~~Fl~~v~Pk~AliS---~G~~N~yghPh~~Vl~r 255 (293)
T COG2333 193 --------EK--GE--KLLKKYGPDLRADVLKVGHHGS--KTSSSLAFLEAVKPKVALIS---SGRNNRYGHPHQEVLER 255 (293)
T ss_pred --------ch--hH--HHHHhhCCCccceEEEeccCCc--cccCcHHHHHhcCCcEEEEE---eeccCCCCCCcHHHHHH
Confidence 11 11 2222334456778899999992 23344444455555542000 00112344455555555
Q ss_pred hhhhhhhcCC
Q 022158 286 AVPANLVCGM 295 (302)
Q Consensus 286 ~~~~~~~~~~ 295 (302)
.-+.|++-=+
T Consensus 256 l~~~~~~v~r 265 (293)
T COG2333 256 LQKRGIKVYR 265 (293)
T ss_pred HHhcCCeEEe
Confidence 5444444333
No 19
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.45 E-value=4.4e-13 Score=133.75 Aligned_cols=138 Identities=18% Similarity=0.138 Sum_probs=95.1
Q ss_pred CeEEEEEee-cCCCcEEEEEEecCCCCCcEEEEcCCCCCh---HHHHHHHHHcC---CCeeEEecCCCCcCccCChHHHH
Q 022158 60 KLLFRQTFE-KESSTYTYLLADVNHPDKPALLIDPVDKTV---DRDLNVIKELG---LKLVYAMNTHVHADHVTGTGLIK 132 (302)
Q Consensus 60 ~~~~~~~~~-~~~~~~~yli~~~~~~~~~~iLID~G~~~~---~~l~~~l~~~~---~~i~~I~~TH~H~DH~gg~~~l~ 132 (302)
.|.++.+-. ...+.+||+|.. ++..+|||||.... ......+...+ .++++||+||.|.||+|+++.+.
T Consensus 174 ~m~i~~LGg~~eVG~Sc~Ll~~----~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~ 249 (630)
T TIGR03675 174 WVRVTALGGFREVGRSALLLST----PESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLF 249 (630)
T ss_pred eEEEEEEecCCccCCCEEEEEE----CCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHH
Confidence 344443332 335668999998 67899999996432 11122222222 24899999999999999999998
Q ss_pred hhCCCCeEEeccCCCC-------------------------------CcceeecCCCEEEe-CCeEEEEEEcCCCCCCCE
Q 022158 133 SKVPGVKSIISKASGS-------------------------------KADLHVEHGDKVSF-GDLFLEVRATPGHTLGCV 180 (302)
Q Consensus 133 ~~~p~~~i~~~~~~~~-------------------------------~~~~~~~~g~~~~l-g~~~i~~i~~pGHt~g~~ 180 (302)
+...+.+||++..+.. .....+..++.+.+ ++.+++++++ ||++|+.
T Consensus 250 k~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~A-GHilGsa 328 (630)
T TIGR03675 250 KYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNA-GHILGSA 328 (630)
T ss_pred HhCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecC-ccccCce
Confidence 7644789999864210 01246677888888 4788888865 9999998
Q ss_pred EEEECCCCCCCCCcEEEEcccccc
Q 022158 181 TYVSGEGPDQPQPRMAFTGDALLI 204 (302)
Q Consensus 181 ~~~~~~~~~~~~~~vlftGD~l~~ 204 (302)
++.+... ++..+++||||.-+.
T Consensus 329 ~~~~~i~--dg~~~IvYTGD~~~~ 350 (630)
T TIGR03675 329 IAHLHIG--DGLYNIVYTGDFKYE 350 (630)
T ss_pred EEEEEEC--CCCEEEEEeCCCCCC
Confidence 8876532 134689999997653
No 20
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.44 E-value=1.5e-12 Score=116.42 Aligned_cols=119 Identities=17% Similarity=0.110 Sum_probs=87.9
Q ss_pred CCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhh-CCCCeEEeccCCC-
Q 022158 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSK-VPGVKSIISKASG- 147 (302)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~-~p~~~i~~~~~~~- 147 (302)
.....+|+|.. ++..+|||||... +.+.+ ...++++||+||.|.||++|+..+... .+..+||++....
T Consensus 34 ~r~~~s~li~~----~~~~iLiD~G~~~---~~~~~--~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~ 104 (250)
T PRK11244 34 RRRPCSALIEF----NGARTLIDAGLPD---LAERF--PPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEG 104 (250)
T ss_pred CcceeEEEEEE----CCCEEEEECCChH---HhhcC--CcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhh
Confidence 45566888887 6789999999532 11111 123589999999999999999877532 2456788875421
Q ss_pred ------C----CcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEcccc
Q 022158 148 ------S----KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDAL 202 (302)
Q Consensus 148 ------~----~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l 202 (302)
. .....+.+++.+.+++.+++++.+ .|+.++++|.++. ++.+++|+||+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~I~~~~~-~H~~~s~g~~i~~----~~~~i~ysgDt~ 164 (250)
T PRK11244 105 CDDLFKHPGILDFSHPLEPFEPFDLGGLQVTPLPL-NHSKLTFGYLLET----AHSRVAYLTDTV 164 (250)
T ss_pred HHHHhcCccccccccccCCCCCeeECCEEEEEEee-CCCcceeEEEEec----CCeEEEEEcCCC
Confidence 0 111347788999999999999988 5888999999975 578999999985
No 21
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.38 E-value=5.2e-12 Score=111.06 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=86.3
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCC-ChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCCC--
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDK-TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG-- 147 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~-~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~-- 147 (302)
.+++||+|.. ++..+||||+.. .... .++....++++|++||.|.||++++..+... +++++++++...
T Consensus 6 lG~s~~li~~----~~~~iLiDP~~~~~~~~---~~~~~~~~id~vliTH~H~DH~~~~~~~~~~-~~~~v~~~~~~~~~ 77 (228)
T PRK00685 6 LGHSAFLIET----GGKKILIDPFITGNPLA---DLKPEDVKVDYILLTHGHGDHLGDTVEIAKR-TGATVIANAELANY 77 (228)
T ss_pred EcceEEEEEE----CCEEEEECCCCCCCCCC---CCChhcCcccEEEeCCCCccccccHHHHHHh-CCCEEEEeHHHHHH
Confidence 3468999998 789999998531 1110 1111223789999999999999998887654 478888775321
Q ss_pred -----CCcceeecCCCEEEeCCeEEEEEEcCCCCCC------------CEEEEECCCCCCCCCcEEEEcccccc
Q 022158 148 -----SKADLHVEHGDKVSFGDLFLEVRATPGHTLG------------CVTYVSGEGPDQPQPRMAFTGDALLI 204 (302)
Q Consensus 148 -----~~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g------------~~~~~~~~~~~~~~~~vlftGD~l~~ 204 (302)
......+..++.+.+++.+++++++. |... ..+|.++. ++.+++|+||+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~-H~~~~~~~~~~~~~~~~~g~~i~~----~~~~i~~~GDt~~~ 146 (228)
T PRK00685 78 LSEKGVEKTHPMNIGGTVEFDGGKVKLTPAL-HSSSFIDEDGITYLGNPTGFVITF----EGKTIYHAGDTGLF 146 (228)
T ss_pred HHhcCCCceeeccCCCcEEECCEEEEEEEEE-cCCCCcCCCCcccCCCceEEEEEE----CCeEEEEecCccch
Confidence 22345678889999999999988763 4432 47888875 46799999998653
No 22
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.37 E-value=5.7e-12 Score=111.81 Aligned_cols=118 Identities=17% Similarity=0.094 Sum_probs=85.6
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhC-CCCeEEeccCCC--
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV-PGVKSIISKASG-- 147 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~-p~~~i~~~~~~~-- 147 (302)
....+++|.. ++..+|||+|... +.+.+. ..++++||+||.|.||++|+..+.... +...||+++...
T Consensus 25 r~~~s~~i~~----~~~~iliD~G~~~---~~~~~~--~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~ 95 (238)
T TIGR03307 25 RQPCSAVIEF----NGARTLIDAGLTD---LAERFP--PGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGC 95 (238)
T ss_pred CcceEEEEEE----CCcEEEEECCChh---HhhccC--ccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhH
Confidence 3445778877 5789999999532 111111 235899999999999999997775432 357788875421
Q ss_pred --------C-CcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEcccc
Q 022158 148 --------S-KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDAL 202 (302)
Q Consensus 148 --------~-~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l 202 (302)
. .....+..++.+.+++.+|+.+++ .|+.++++|.++. ++++++|+||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~H~~~~~g~~i~~----~~~~i~y~gDt~ 154 (238)
T TIGR03307 96 DDLFKHPGILDFSKPLEAFEPFDLGGLRVTPLPL-VHSKLTFGYLLET----DGQRVAYLTDTA 154 (238)
T ss_pred HHHhcCcccccccccccCCceEEECCEEEEEEec-CCCCcceEEEEec----CCcEEEEEecCC
Confidence 0 011236788999999999999988 4888899999975 578899999984
No 23
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.36 E-value=5.9e-12 Score=122.96 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=104.0
Q ss_pred cCCCcEEEEEEecCCCCCcEEEEcCCCCC-------hHHH---HHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCC
Q 022158 69 KESSTYTYLLADVNHPDKPALLIDPVDKT-------VDRD---LNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGV 138 (302)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~iLID~G~~~-------~~~l---~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~ 138 (302)
++.+.|+|++.- +++.+++|+|... .+.+ ..++.+...++++||+||+|.||+||++++..+.+.+
T Consensus 18 ~EiGkN~~vve~----~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~ 93 (555)
T COG0595 18 GEIGKNMYVVEY----GDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFA 93 (555)
T ss_pred hhhccceEEEEE----CCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCcC
Confidence 346789999999 7899999999421 1111 2446666668999999999999999999999988669
Q ss_pred eEEeccCCC---------------CCcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEccccc
Q 022158 139 KSIISKASG---------------SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALL 203 (302)
Q Consensus 139 ~i~~~~~~~---------------~~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~ 203 (302)
+||+++.+. ....+.+..++.+++++..++++++.+-.|+++++.+.. +.+.+++|||.-+
T Consensus 94 piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~T----p~G~Iv~TGDFk~ 169 (555)
T COG0595 94 PIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKT----PEGNIVYTGDFKF 169 (555)
T ss_pred ceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEEC----CCccEEEeCCEEe
Confidence 999886431 134578899999999999999999976678999999976 6788999999877
Q ss_pred cC
Q 022158 204 IR 205 (302)
Q Consensus 204 ~~ 205 (302)
..
T Consensus 170 d~ 171 (555)
T COG0595 170 DP 171 (555)
T ss_pred cC
Confidence 54
No 24
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.31 E-value=8.3e-11 Score=103.19 Aligned_cols=69 Identities=22% Similarity=0.327 Sum_probs=59.1
Q ss_pred CcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCCC---eeEEecCCCCcCccCChHHHHhhC-CCCeEEeccC
Q 022158 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLK---LVYAMNTHVHADHVTGTGLIKSKV-PGVKSIISKA 145 (302)
Q Consensus 72 ~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~---i~~I~~TH~H~DH~gg~~~l~~~~-p~~~i~~~~~ 145 (302)
-+.++||+. ++..+|+|+|. ....++..++.+|.+ +++|++||.|+||+||+..+.+.. |+.++|+|+.
T Consensus 21 hGfS~LVE~----~~~riLFDtG~-~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~ 93 (259)
T COG1237 21 HGFSALVED----EGTRILFDTGT-DSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPD 93 (259)
T ss_pred CceEEEEEc----CCeEEEEeCCC-CcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChH
Confidence 346889988 78899999994 577788999999886 799999999999999999887754 8899999864
No 25
>PRK04286 hypothetical protein; Provisional
Probab=99.29 E-value=2.7e-11 Score=111.13 Aligned_cols=124 Identities=18% Similarity=0.195 Sum_probs=78.8
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCCC-------------hHHHHHHHHHc---CCCeeEEecCCCCcCccCChHHHH--
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDKT-------------VDRDLNVIKEL---GLKLVYAMNTHVHADHVTGTGLIK-- 132 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~~-------------~~~l~~~l~~~---~~~i~~I~~TH~H~DH~gg~~~l~-- 132 (302)
..+||++|.. ++..+|||||... ...+.+.+... -.++++||+||.|+||++|+..+.
T Consensus 13 ~~~~~~~I~~----~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~ 88 (298)
T PRK04286 13 VRSMATFVET----KDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYE 88 (298)
T ss_pred ceeeEEEEEE----CCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccc
Confidence 3459999998 7899999999421 02233333332 235899999999999999887651
Q ss_pred --------hhCCCCeEEeccC-C-----------C-------CCcceeecCCCEEEeCCeEEEEEEcCCCCC--CCEEE-
Q 022158 133 --------SKVPGVKSIISKA-S-----------G-------SKADLHVEHGDKVSFGDLFLEVRATPGHTL--GCVTY- 182 (302)
Q Consensus 133 --------~~~p~~~i~~~~~-~-----------~-------~~~~~~~~~g~~~~lg~~~i~~i~~pGHt~--g~~~~- 182 (302)
..+....++.... . . ......+..++.+.+|+.++++.....|.. +.++|
T Consensus 89 ~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~ 168 (298)
T PRK04286 89 LSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGYV 168 (298)
T ss_pred cccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccceE
Confidence 2222223332110 0 0 002245778899999999999775435743 24443
Q ss_pred ---EECCCCCCCCCcEEEEcccc
Q 022158 183 ---VSGEGPDQPQPRMAFTGDAL 202 (302)
Q Consensus 183 ---~~~~~~~~~~~~vlftGD~l 202 (302)
.++. ++.+++|+||+-
T Consensus 169 i~~ri~~----gg~~~~~~gDt~ 187 (298)
T PRK04286 169 IMVRISD----GDESFVFASDVQ 187 (298)
T ss_pred EEEEEEe----CCEEEEEECCCC
Confidence 4443 567899999997
No 26
>PRK02126 ribonuclease Z; Provisional
Probab=99.25 E-value=4e-11 Score=111.44 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=80.3
Q ss_pred EEeecCCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhC----CCCeE
Q 022158 65 QTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV----PGVKS 140 (302)
Q Consensus 65 ~~~~~~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~----p~~~i 140 (302)
++..+....|||++.... ++..+|||||. .. ..++..-.++++||+||.|.||++|+..|...+ +..+|
T Consensus 8 ~~~~g~~~dn~~~l~~~~--~~~~iLiD~G~--~~---~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~i 80 (334)
T PRK02126 8 RLVNGPFDDPGLYVDFLF--ERRALLFDLGD--LH---HLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRL 80 (334)
T ss_pred EEecCCCCCcEEEEEECC--CCeEEEEcCCC--HH---HHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEE
Confidence 356677888999998742 47899999995 22 222332346999999999999999999998764 34678
Q ss_pred EeccCCC-----------------CCcc---e--e--------------------------ecCCCEEEeCCeEEEEEEc
Q 022158 141 IISKASG-----------------SKAD---L--H--------------------------VEHGDKVSFGDLFLEVRAT 172 (302)
Q Consensus 141 ~~~~~~~-----------------~~~~---~--~--------------------------~~~g~~~~lg~~~i~~i~~ 172 (302)
|+++... ..+. . . ..++..+..++.+|+++.+
T Consensus 81 ygp~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~ 160 (334)
T PRK02126 81 FGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFL 160 (334)
T ss_pred EECHHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEc
Confidence 8765211 0000 0 0 1234456778999999999
Q ss_pred CCCCCCCEEEEECC
Q 022158 173 PGHTLGCVTYVSGE 186 (302)
Q Consensus 173 pGHt~g~~~~~~~~ 186 (302)
. |+..+++|.++.
T Consensus 161 ~-H~vp~~gy~~~e 173 (334)
T PRK02126 161 D-HGIPCLAFALEE 173 (334)
T ss_pred c-CCCceeEEEEEe
Confidence 6 888999999974
No 27
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.23 E-value=1.9e-10 Score=105.67 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=77.3
Q ss_pred CCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCC---CeeEEecCCCCcCccCChHHHHhh--C----CCCeE
Q 022158 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSK--V----PGVKS 140 (302)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~---~i~~I~~TH~H~DH~gg~~~l~~~--~----p~~~i 140 (302)
..+++||+|...+++++..+|||||.... ..+.+.+. ++++||+||.|+||++|++.+... + ...+|
T Consensus 14 ~r~~s~~lv~~~~~~~~~~iLiD~G~g~~----~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~I 89 (303)
T TIGR02649 14 TRNVTAILLNLQHPTQSGLWLFDCGEGTQ----HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTI 89 (303)
T ss_pred CCCccEEEEEccCCCCCCEEEEECCccHH----HHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEE
Confidence 46677899975211124689999996532 34444443 489999999999999999987532 1 23578
Q ss_pred EeccCCCC---------------C-cceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECC
Q 022158 141 IISKASGS---------------K-ADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGE 186 (302)
Q Consensus 141 ~~~~~~~~---------------~-~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~ 186 (302)
|+++.... . ....+.+++.+..++.+++.+++. |+..+++|.++.
T Consensus 90 ygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~~ 150 (303)
T TIGR02649 90 YGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLE-HPLECYGYRIEE 150 (303)
T ss_pred EechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEcc-CccceEEEEEec
Confidence 88763210 1 113456677888888899998885 788899999864
No 28
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.23 E-value=1.2e-10 Score=106.69 Aligned_cols=107 Identities=17% Similarity=0.138 Sum_probs=77.3
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCC---CeeEEecCCCCcCccCChHHHHhhC------CCCeEE
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV------PGVKSI 141 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~---~i~~I~~TH~H~DH~gg~~~l~~~~------p~~~i~ 141 (302)
..++|++|.. ++..+|||+|.. +...+.+.+. ++++||+||.|+||++|+..+.... ....||
T Consensus 16 r~~~~~~v~~----~~~~iLiD~G~g----~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy 87 (299)
T TIGR02651 16 RNLPSIALKL----NGELWLFDCGEG----TQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIY 87 (299)
T ss_pred CCCceEEEEE----CCeEEEEECCHH----HHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEE
Confidence 5667899988 678999999953 2234444444 4799999999999999999886531 134677
Q ss_pred eccCCCC---------------C-cceeecCCC-EEEeCCeEEEEEEcCCCCCCCEEEEECC
Q 022158 142 ISKASGS---------------K-ADLHVEHGD-KVSFGDLFLEVRATPGHTLGCVTYVSGE 186 (302)
Q Consensus 142 ~~~~~~~---------------~-~~~~~~~g~-~~~lg~~~i~~i~~pGHt~g~~~~~~~~ 186 (302)
+++.... . ....+.+++ .+..++.+++++++. |+..+++|.++.
T Consensus 88 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~~ 148 (299)
T TIGR02651 88 GPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLD-HSIPSLGYRFEE 148 (299)
T ss_pred CCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEcC-CCCceEEEEEEE
Confidence 7653210 0 113566777 588999999999986 788899999874
No 29
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.21 E-value=5e-11 Score=109.38 Aligned_cols=120 Identities=14% Similarity=0.170 Sum_probs=84.0
Q ss_pred cEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHc----CC---CeeEEecCCCCcCccCChHHHHhhCCCCeEEeccC
Q 022158 73 TYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL----GL---KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (302)
Q Consensus 73 ~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~----~~---~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~ 145 (302)
..+++|... ++..+|||+|.+ ....+..++++ +. +|++||+||.|.||+.|+..|.+.. ..+||+++.
T Consensus 38 rss~ll~~~---g~~~iLID~Gpd-~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~-~lpVya~~~ 112 (302)
T TIGR02108 38 QSSIAVSAD---GERWVLLNASPD-IRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQ-PFTLYATEM 112 (302)
T ss_pred ccEEEEEeC---CCEEEEEECCHH-HHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCC-CceEEECHH
Confidence 346777552 456899999953 33333333322 22 4899999999999999999998665 789999864
Q ss_pred CCCC---------------cceeecCCCEEEeC-----CeEEEEEEcCC-------C------CCCCEEEEECCCCCCC-
Q 022158 146 SGSK---------------ADLHVEHGDKVSFG-----DLFLEVRATPG-------H------TLGCVTYVSGEGPDQP- 191 (302)
Q Consensus 146 ~~~~---------------~~~~~~~g~~~~lg-----~~~i~~i~~pG-------H------t~g~~~~~~~~~~~~~- 191 (302)
.... ....+..++.+.++ +.+|+.+++++ | ..+.++|.+++ +
T Consensus 113 t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~----~~ 188 (302)
T TIGR02108 113 VLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIED----GT 188 (302)
T ss_pred HHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEe----CC
Confidence 3210 01355667777664 48999999971 3 34789999975 3
Q ss_pred -CCcEEEEccc
Q 022158 192 -QPRMAFTGDA 201 (302)
Q Consensus 192 -~~~vlftGD~ 201 (302)
+++++|++|+
T Consensus 189 ~g~~~~y~tD~ 199 (302)
T TIGR02108 189 TGKRLFYIPGC 199 (302)
T ss_pred CCcEEEEECCC
Confidence 6789999997
No 30
>PRK02113 putative hydrolase; Provisional
Probab=99.20 E-value=8e-11 Score=105.24 Aligned_cols=115 Identities=20% Similarity=0.184 Sum_probs=82.1
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCC-CeeEEecCCCCcCccCChHHHHhh--CCCCeEEeccCCC
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKSK--VPGVKSIISKASG 147 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~-~i~~I~~TH~H~DH~gg~~~l~~~--~p~~~i~~~~~~~ 147 (302)
-...+|+|.. ++..+|||+|...... +.+.+. ++++||+||.|+||++|+..+... ....+||+++...
T Consensus 33 R~~~s~li~~----~~~~iLiD~G~g~~~~----l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~ 104 (252)
T PRK02113 33 RLRTSALVET----EGARILIDCGPDFREQ----MLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVA 104 (252)
T ss_pred ceeeEEEEEE----CCeEEEEECCchHHHH----HHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHH
Confidence 4456889987 6789999999643322 222233 589999999999999999877532 2356788775311
Q ss_pred ---------------C-----CcceeecCCCEEEeCCeEEEEEEcCCCC-CCCEEEEECCCCCCCCCcEEEEcccc
Q 022158 148 ---------------S-----KADLHVEHGDKVSFGDLFLEVRATPGHT-LGCVTYVSGEGPDQPQPRMAFTGDAL 202 (302)
Q Consensus 148 ---------------~-----~~~~~~~~g~~~~lg~~~i~~i~~pGHt-~g~~~~~~~~~~~~~~~~vlftGD~l 202 (302)
. .....+..|+.+.+++.+++++.+. |+ ..+++|.+. +++|+||+.
T Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~-H~~~~~~gy~i~--------~i~y~~Dt~ 171 (252)
T PRK02113 105 ERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVM-HGKLPILGYRIG--------KMAYITDML 171 (252)
T ss_pred HHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEec-CCCccEEEEEeC--------CEEEccCCC
Confidence 0 0124567889999999999999886 65 457888872 589999985
No 31
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=4.1e-11 Score=114.92 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=91.7
Q ss_pred CCCcEEEEEEecCCCCCcEEEEcCCCCChHH--HHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCCC
Q 022158 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDR--DLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG 147 (302)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~iLID~G~~~~~~--l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~ 147 (302)
..+..|.++.. ++..+++|||...... ......... ++|+|++||.|.||+|+++.+....-..+||+...+.
T Consensus 11 evg~s~~~l~~----~~~~il~D~G~~~~~~~~~~p~~~~~~-~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~ 85 (427)
T COG1236 11 EVGRSCVLLET----GGTRILLDCGLFPGDPSPERPLLPPFP-KVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTA 85 (427)
T ss_pred CcCcEEEEEEE----CCceEEEECCCCcCcCCccCCCCCCCC-CcCEEEeccCchhhhcccHHHHHhccCCceeeccCHH
Confidence 45667889988 6789999999533221 111111111 5799999999999999999998743357888876542
Q ss_pred C------------------------------CcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEE
Q 022158 148 S------------------------------KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAF 197 (302)
Q Consensus 148 ~------------------------------~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlf 197 (302)
. ...+.+.-|+.+.+++.+++++++ ||.+|+..+.++. ++.+++|
T Consensus 86 ~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~A-GHilGsa~~~le~----~~~~ily 160 (427)
T COG1236 86 ALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNA-GHILGSAAILLEV----DGGRILY 160 (427)
T ss_pred HHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecC-CCccceeEEEEEe----CCceEEE
Confidence 1 111458899999999988888887 9999999999985 4667999
Q ss_pred Eccccc
Q 022158 198 TGDALL 203 (302)
Q Consensus 198 tGD~l~ 203 (302)
|||.-.
T Consensus 161 tGD~~~ 166 (427)
T COG1236 161 TGDVKR 166 (427)
T ss_pred EeccCC
Confidence 999753
No 32
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.15 E-value=1.2e-10 Score=107.00 Aligned_cols=125 Identities=10% Similarity=0.050 Sum_probs=83.4
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHH--HH-cCC---CeeEEecCCCCcCccCChHHHHhhCCCCeEEecc
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVI--KE-LGL---KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l--~~-~~~---~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~ 144 (302)
....+|+|... ++..+|||+|.....++.+.. .- .|. ++++||+||.|+||+.|+..|.... ..+||+++
T Consensus 37 R~~ss~li~~~---g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~~-~l~Vyg~~ 112 (302)
T PRK05184 37 RTQSSIAVSAD---GEDWVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREGQ-PFPVYATP 112 (302)
T ss_pred ccccEEEEEcC---CCEEEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccCC-CeEEEeCH
Confidence 44568888762 234699999964333332220 00 022 4899999999999999999996543 67788875
Q ss_pred CCCC-----------------CcceeecCCCEEEeC---CeEEEEEEcCC------------CCCCCEEEEECCCCCCCC
Q 022158 145 ASGS-----------------KADLHVEHGDKVSFG---DLFLEVRATPG------------HTLGCVTYVSGEGPDQPQ 192 (302)
Q Consensus 145 ~~~~-----------------~~~~~~~~g~~~~lg---~~~i~~i~~pG------------Ht~g~~~~~~~~~~~~~~ 192 (302)
.... .....+..++.+.++ +.+|+.+.++. |...+++|.++.. .++
T Consensus 113 ~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~--~~g 190 (302)
T PRK05184 113 AVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDR--ATG 190 (302)
T ss_pred HHHHHHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEec--CCC
Confidence 3210 012356677888886 89999999862 5567899999510 146
Q ss_pred CcEEEEccc
Q 022158 193 PRMAFTGDA 201 (302)
Q Consensus 193 ~~vlftGD~ 201 (302)
++++|++|.
T Consensus 191 ~~~~y~tD~ 199 (302)
T PRK05184 191 KRLFYAPGL 199 (302)
T ss_pred cEEEEECCC
Confidence 779999775
No 33
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.08 E-value=7e-11 Score=100.71 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=76.0
Q ss_pred EEEEcCCCCChH-HHHHHHHHcCC---CeeEEecCCCCcCccCChHHHHhh---CCCCeEEeccCCCC------------
Q 022158 88 ALLIDPVDKTVD-RDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSK---VPGVKSIISKASGS------------ 148 (302)
Q Consensus 88 ~iLID~G~~~~~-~l~~~l~~~~~---~i~~I~~TH~H~DH~gg~~~l~~~---~p~~~i~~~~~~~~------------ 148 (302)
.+|||||....+ .+...+..... ++++|++||.|.||+.|+..+... .+. ++|+++....
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~~ 80 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILDL 80 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHTT
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhcccccc
Confidence 689999964220 12212222111 689999999999999997766553 334 7888753211
Q ss_pred ------CcceeecCCCEEEeCCeEEEEEEcCCCCCCCEE----EEECCCCCCCCCcEEEEccccc
Q 022158 149 ------KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVT----YVSGEGPDQPQPRMAFTGDALL 203 (302)
Q Consensus 149 ------~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~----~~~~~~~~~~~~~vlftGD~l~ 203 (302)
.....+..++.+.+++.+++++++ .|..+..+ |.++. ++.+++|+||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~H~~~~~~~~~g~~i~~----~~~~i~~~gD~~~ 140 (194)
T PF12706_consen 81 YPEEDNFDIIEISPGDEFEIGDFRITPFPA-NHGPPSYGGNKGFVIEP----DGKKIFYSGDTNY 140 (194)
T ss_dssp CCTTSGEEEEEECTTEEEEETTEEEEEEEE-ESSSCCEEECCEEEEEE----TTEEEEEETSSSS
T ss_pred cccccceeEEEeccCceEEeceEEEEEEec-cccccccccCceEEEec----CCcceEEeeccch
Confidence 112567778899999999999988 48888877 88874 6889999999864
No 34
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.07 E-value=2.5e-10 Score=107.69 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=90.7
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCCCh---HHHHHHHH--HcC-CCeeEEecCCCCcCccCChHHHHhhCCCCeEEecc
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDKTV---DRDLNVIK--ELG-LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~~~---~~l~~~l~--~~~-~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~ 144 (302)
-|-+|+++.+ .+..+|+|||...+ ......+. +.. ..+|+|++||+|.||+|-++.|.+..-+.+||+.+
T Consensus 192 VGRSa~lv~T----~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T~ 267 (637)
T COG1782 192 VGRSALLVST----PESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCTP 267 (637)
T ss_pred ccceeEEEec----CCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcCCCCCeeeCC
Confidence 5667999988 57899999985221 12222222 111 14799999999999999999998864578999998
Q ss_pred CCCC------------------C-------------cceeecCCCEEEeC-CeEEEEEEcCCCCCCCEEEEECCCCCCCC
Q 022158 145 ASGS------------------K-------------ADLHVEHGDKVSFG-DLFLEVRATPGHTLGCVTYVSGEGPDQPQ 192 (302)
Q Consensus 145 ~~~~------------------~-------------~~~~~~~g~~~~lg-~~~i~~i~~pGHt~g~~~~~~~~~~~~~~ 192 (302)
++.. . -..++.-|++-++. |.+++++++ ||--||.+..+.-+ ++.
T Consensus 268 PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NA-GHILGSA~~HlHIG--dGl 344 (637)
T COG1782 268 PTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNA-GHILGSAMAHLHIG--DGL 344 (637)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecc-cchhcceeeEEEec--CCc
Confidence 6531 0 12456666666664 677888776 99999988876554 468
Q ss_pred CcEEEEcccccc
Q 022158 193 PRMAFTGDALLI 204 (302)
Q Consensus 193 ~~vlftGD~l~~ 204 (302)
.+++||||.-|.
T Consensus 345 yNi~yTGDfk~~ 356 (637)
T COG1782 345 YNIVYTGDFKFE 356 (637)
T ss_pred eeEEEecccccc
Confidence 899999998654
No 35
>PRK00055 ribonuclease Z; Reviewed
Probab=98.97 E-value=1.7e-09 Score=97.16 Aligned_cols=66 Identities=23% Similarity=0.212 Sum_probs=47.8
Q ss_pred CcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCC---CeeEEecCCCCcCccCChHHHHhhC------CCCeEEe
Q 022158 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV------PGVKSII 142 (302)
Q Consensus 72 ~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~---~i~~I~~TH~H~DH~gg~~~l~~~~------p~~~i~~ 142 (302)
.++|++|.. ++..+|||+|... ...+.+.+. ++++||+||.|+||++|++.+...+ ....||+
T Consensus 19 ~~~~~li~~----~~~~iLiD~G~g~----~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~ 90 (270)
T PRK00055 19 NVSSILLRL----GGELFLFDCGEGT----QRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYG 90 (270)
T ss_pred CCCEEEEEE----CCcEEEEECCHHH----HHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEEC
Confidence 478999988 6789999999532 233334444 4799999999999999999886432 2345777
Q ss_pred ccC
Q 022158 143 SKA 145 (302)
Q Consensus 143 ~~~ 145 (302)
++.
T Consensus 91 p~~ 93 (270)
T PRK00055 91 PKG 93 (270)
T ss_pred Ccc
Confidence 653
No 36
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.94 E-value=2.4e-09 Score=89.44 Aligned_cols=106 Identities=21% Similarity=0.238 Sum_probs=66.6
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCCCCCc
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGSKA 150 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~~~ 150 (302)
.+.+||+|+. ++..||+||.... ........++|+|++||.|.||+.-- .+.+. ...
T Consensus 5 lgha~~~ie~----~g~~iliDP~~~~-----~~~~~~~~~~D~IlisH~H~DH~~~~-~l~~~-------------~~~ 61 (163)
T PF13483_consen 5 LGHASFLIET----GGKRILIDPWFSS-----VGYAPPPPKADAILISHSHPDHFDPE-TLKRL-------------DRD 61 (163)
T ss_dssp EETTEEEEEE----TTEEEEES--TTT-------T-TSS-B-SEEEESSSSTTT-CCC-CCCCH-------------HTS
T ss_pred EEeeEEEEEE----CCEEEEECCCCCc-----cCcccccCCCCEEEECCCccccCChh-Hhhhc-------------ccc
Confidence 3567999999 7899999998421 11111225689999999999999762 22211 122
Q ss_pred ceeecCCCEEEeCCeEEEEEEcC-----CCCCC-CEEEEECCCCCCCCCcEEEEccccc
Q 022158 151 DLHVEHGDKVSFGDLFLEVRATP-----GHTLG-CVTYVSGEGPDQPQPRMAFTGDALL 203 (302)
Q Consensus 151 ~~~~~~g~~~~lg~~~i~~i~~p-----GHt~g-~~~~~~~~~~~~~~~~vlftGD~l~ 203 (302)
...+..++.+++++..++.+... ++..+ .++|.++. ++.++++.||+..
T Consensus 62 ~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~----~g~~i~~~Gd~~~ 116 (163)
T PF13483_consen 62 IHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEV----GGVTIYHAGDTGF 116 (163)
T ss_dssp SEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEE----TTEEEEE-TT--S
T ss_pred cEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEe----CCCEEEEECCCcc
Confidence 34555688899999999988763 44444 78888875 5789999999875
No 37
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.85 E-value=4.2e-08 Score=91.92 Aligned_cols=89 Identities=22% Similarity=0.295 Sum_probs=63.0
Q ss_pred CeeEEecCCCCcCccC--ChHHHHhhC-CCCeEEeccCC-------CC--CcceeecCCCEEEeCCeEEEEEEcC-----
Q 022158 111 KLVYAMNTHVHADHVT--GTGLIKSKV-PGVKSIISKAS-------GS--KADLHVEHGDKVSFGDLFLEVRATP----- 173 (302)
Q Consensus 111 ~i~~I~~TH~H~DH~g--g~~~l~~~~-p~~~i~~~~~~-------~~--~~~~~~~~g~~~~lg~~~i~~i~~p----- 173 (302)
++|+|++||.|.||+. .+..+.+.. +.+.++++... +. .....+..|+.+.+++.+|++++..
T Consensus 109 ~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h~~~~ 188 (355)
T PRK11709 109 EIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKDIKIHALDSFDRTAL 188 (355)
T ss_pred CCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEECCEEEEEEeccccccc
Confidence 4799999999999994 344555544 35677776432 11 1236788999999999999998761
Q ss_pred -----CCCC-----------CCEEEEECCCCCCCCCcEEEEccccc
Q 022158 174 -----GHTL-----------GCVTYVSGEGPDQPQPRMAFTGDALL 203 (302)
Q Consensus 174 -----GHt~-----------g~~~~~~~~~~~~~~~~vlftGD~l~ 203 (302)
.|.. ..++|.++. ++.+++|+||+.+
T Consensus 189 i~~p~~h~~~~~~~~~d~~~~~~gyvie~----~~~tvy~sGDT~~ 230 (355)
T PRK11709 189 VTLPADGKAAGGVLPDDMDRRAVNYLFKT----PGGNIYHSGDSHY 230 (355)
T ss_pred cccccccccccccccccCCcceEEEEEEe----CCeEEEEeCCCCc
Confidence 2221 247788864 5789999999975
No 38
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.83 E-value=8.7e-09 Score=92.99 Aligned_cols=123 Identities=16% Similarity=0.187 Sum_probs=86.8
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCC----CChHHHH--HHHHHcCC---CeeEEecCCCCcCccCChHHHHhhC-CCCeE
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVD----KTVDRDL--NVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV-PGVKS 140 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~----~~~~~l~--~~l~~~~~---~i~~I~~TH~H~DH~gg~~~l~~~~-p~~~i 140 (302)
.+.+|.++.- +++.|++|||. .+..++. .++...|. -++-|++||.|.||+|+++++.+.. -+.+|
T Consensus 15 vGrSCilvsi----~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPI 90 (501)
T KOG1136|consen 15 VGRSCILVSI----GGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGPI 90 (501)
T ss_pred cCceEEEEEE----CCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCCCce
Confidence 4557888887 79999999984 2222221 22332221 2789999999999999999998752 27789
Q ss_pred EeccCCCC--------------------------------CcceeecCCCEEEeC-CeEEEEEEcCCCCCCCEEEEECCC
Q 022158 141 IISKASGS--------------------------------KADLHVEHGDKVSFG-DLFLEVRATPGHTLGCVTYVSGEG 187 (302)
Q Consensus 141 ~~~~~~~~--------------------------------~~~~~~~~g~~~~lg-~~~i~~i~~pGHt~g~~~~~~~~~ 187 (302)
|++.++.. .....+.-.+.+.++ +++++++++ ||--|...|++.-
T Consensus 91 YMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYA-GHVLGAaMf~ikv- 168 (501)
T KOG1136|consen 91 YMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYA-GHVLGAAMFYIKV- 168 (501)
T ss_pred EEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeec-ccccceeEEEEEe-
Confidence 98764321 011334445566664 678888886 9999999999976
Q ss_pred CCCCCCcEEEEcccc
Q 022158 188 PDQPQPRMAFTGDAL 202 (302)
Q Consensus 188 ~~~~~~~vlftGD~l 202 (302)
+...+++|||.-
T Consensus 169 ---Gd~svvYTGDYn 180 (501)
T KOG1136|consen 169 ---GDQSVVYTGDYN 180 (501)
T ss_pred ---cceeEEEecCcc
Confidence 578999999964
No 39
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.7e-08 Score=89.77 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=99.3
Q ss_pred EEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCC---CeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCCC---
Q 022158 74 YTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG--- 147 (302)
Q Consensus 74 ~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~---~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~--- 147 (302)
+.-++.+ ++..+++|+|.. .+.+.+. +|+.+++||.|++|+|++..+. ..+++.+....
T Consensus 96 ~~tl~~d----~~~v~v~~~gls-------~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~----~sp~l~~s~e~~gr 160 (302)
T KOG4736|consen 96 QITLVVD----GGDVVVVDTGLS-------VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFP----QSPILYHSMEYIGR 160 (302)
T ss_pred ccceeec----CCceEEEecCCc-------hhhhcCcChhhcceeEEeccCccccccccccc----CCHHHhhhhhhcCC
Confidence 4446777 688999999964 4555555 3789999999999999998754 44444443221
Q ss_pred CCcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCcEEEEccccccCCcCC-C-C-CC-CCCH-HHHHH
Q 022158 148 SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGR-T-D-FQ-GGSS-SQLYK 222 (302)
Q Consensus 148 ~~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~~~-~-~-~~-~~~~-~~~~~ 222 (302)
......+..+..+.++ ..+++..+||||.-++...+.+. +..+++.++||++-...... . + +. .+.+ ....+
T Consensus 161 ~~~pt~l~e~~~~~l~-~~~~V~~TpGht~~~isvlv~n~--~~~GTv~itGDLf~~~~dlde~d~i~~~e~s~d~~~kr 237 (302)
T KOG4736|consen 161 HVTPTELDERPYLKLS-PNVEVWKTPGHTQHDISVLVHNV--DLYGTVAITGDLFPREEDLDEKDDIMSQEGSEDNAAKR 237 (302)
T ss_pred ccChhhhccCCccccC-CceeEeeCCCCCCcceEEEEEee--cccceEEEEeecccCCccccchhhhhhhccCCchhhhh
Confidence 2234567777788888 57888899999999999888775 46788999999764322110 0 0 00 1111 11122
Q ss_pred HHHHHHhcCCCCeEEEcCCCCC
Q 022158 223 SVHSQIFTLPKDTLIYPAHDYK 244 (302)
Q Consensus 223 sl~~~l~~l~~~~~i~PgHg~~ 244 (302)
..++++..|.+ .+.||||++
T Consensus 238 ~~r~~~v~l~D--~ivpgHg~~ 257 (302)
T KOG4736|consen 238 QSRNRYVCLAD--WIVPGHGPP 257 (302)
T ss_pred hhhhcEEEEee--eeecCCCCc
Confidence 22335556663 899999953
No 40
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.57 E-value=1.9e-07 Score=88.12 Aligned_cols=165 Identities=17% Similarity=0.259 Sum_probs=104.3
Q ss_pred CcEEEEEEecCCCCCcEEEEcCCC--CChHHHHHHHH-HcCCC-eeEEecCCCCcCccCChHHHHhhC----CCCeEEec
Q 022158 72 STYTYLLADVNHPDKPALLIDPVD--KTVDRDLNVIK-ELGLK-LVYAMNTHVHADHVTGTGLIKSKV----PGVKSIIS 143 (302)
Q Consensus 72 ~~~~yli~~~~~~~~~~iLID~G~--~~~~~l~~~l~-~~~~~-i~~I~~TH~H~DH~gg~~~l~~~~----p~~~i~~~ 143 (302)
-+|.-+|++ +.+.|+|||-- ..+..-++... .++.+ +.+|+.||.|.||.||..-+.+.- -.++|+++
T Consensus 125 isNITfveG----dtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP 200 (655)
T COG2015 125 ISNITFVEG----DTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAP 200 (655)
T ss_pred ccceEEEcC----CcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecc
Confidence 345666766 67899999962 23343344333 34543 799999999999999998776532 23556665
Q ss_pred cCCC-------------------------------------------------CCc-ceeecCCCEEEeCCeEEEEEEcC
Q 022158 144 KASG-------------------------------------------------SKA-DLHVEHGDKVSFGDLFLEVRATP 173 (302)
Q Consensus 144 ~~~~-------------------------------------------------~~~-~~~~~~g~~~~lg~~~i~~i~~p 173 (302)
+... ..+ ......|+++.++|.++++..+|
T Consensus 201 ~GFme~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~giGk~la~G~vsLiaPT~~I~~~gE~~~iDGV~~~Fq~tP 280 (655)
T COG2015 201 AGFMEEAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGCGIGKTLATGEVSLIAPTKIIEETGETLTIDGVEFEFQMTP 280 (655)
T ss_pred hhHHHHHHHHhhhhhhhHhhhhhhhhccccCCCccCccccccccccccCceeeecceEEeeccCceEEEeceEEEEeeCC
Confidence 4100 011 13456789999999999999999
Q ss_pred C-CCCCCEEEEECCCCCCCCCcEEEEccccccCCcCCCCCC---CCCHHHHHHHHHHHHhcCCCC-eEEEcCCCCCCC
Q 022158 174 G-HTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQ---GGSSSQLYKSVHSQIFTLPKD-TLIYPAHDYKGF 246 (302)
Q Consensus 174 G-Ht~g~~~~~~~~~~~~~~~~vlftGD~l~~~~~~~~~~~---~~~~~~~~~sl~~~l~~l~~~-~~i~PgHg~~~~ 246 (302)
| .+|..+-+++ |..++|....-....-.....+. -.|...|-+-+.+.+..+..+ -+++..|.++.+
T Consensus 281 gtEaPAEM~~y~------P~~kaL~mAEnat~~lHNlytlRGa~vRD~~~Ws~ylneal~~fg~~adVmfa~H~WP~w 352 (655)
T COG2015 281 GTEAPAEMHFYF------PRLKALCMAENATHTLHNLYTLRGAEVRDAKAWSKYLNEALDMFGDDADVMFASHTWPRW 352 (655)
T ss_pred CCCCcHHHhhhh------hHHHHHHHHhhccccceeeeecccceecchHHHHHHHHHHHHHhcccccEEEeecCCCcc
Confidence 8 5677788887 44566655443322221211122 246778888887777766432 266678887543
No 41
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.40 E-value=2.4e-06 Score=76.74 Aligned_cols=194 Identities=21% Similarity=0.247 Sum_probs=111.2
Q ss_pred CCeEEEEEeecCCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHH----HHHHcCCCeeEEecCCCCcCccCChHHHHhh
Q 022158 59 SKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLN----VIKELGLKLVYAMNTHVHADHVTGTGLIKSK 134 (302)
Q Consensus 59 ~~~~~~~~~~~~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~----~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~ 134 (302)
..|.++. .+.+|++|.. ++..|||||.......-.. .....-..+++|++||.|.||++-.......
T Consensus 5 ~~m~itw-----lGha~~lie~----~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~ 75 (258)
T COG2220 5 EDMKITW-----LGHAAFLIET----GGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALR 75 (258)
T ss_pred cCceEEE-----ecceEEEEEE----CCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHh
Confidence 3555554 4678999999 6889999996421110000 0111222579999999999999987766655
Q ss_pred CC-CCeEEeccCC-------CCC--cceeecCCCEEEeCCeEEEEEEc---C-CCC--------CCCEEEEECCCCCCCC
Q 022158 135 VP-GVKSIISKAS-------GSK--ADLHVEHGDKVSFGDLFLEVRAT---P-GHT--------LGCVTYVSGEGPDQPQ 192 (302)
Q Consensus 135 ~p-~~~i~~~~~~-------~~~--~~~~~~~g~~~~lg~~~i~~i~~---p-GHt--------~g~~~~~~~~~~~~~~ 192 (302)
.. ...++.+... +.. ....+..++.+.+++.++.+... + -+. -..++|.++. ++
T Consensus 76 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~----~g 151 (258)
T COG2220 76 TNKAPVVVVPLGAGDLLIRDGVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIET----PG 151 (258)
T ss_pred cCCCcEEEeHHHHHHHHHhcCCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEe----CC
Confidence 32 3445554432 112 23456678899999988665542 2 122 3366777765 57
Q ss_pred CcEEEEccccccC-----CcCCCC---CCCCC-----HHHHHHHHHHHHhcCCCCeEEEcCCCCCCCCcccHHHHHHhCC
Q 022158 193 PRMAFTGDALLIR-----GCGRTD---FQGGS-----SSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNP 259 (302)
Q Consensus 193 ~~vlftGD~l~~~-----~~~~~~---~~~~~-----~~~~~~sl~~~l~~l~~~~~i~PgHg~~~~~~~~~~~~~~~~~ 259 (302)
.++++.||+-+.. ..+..| .|.+. .....+.. +..+.|.+. .++|.|-. ...+
T Consensus 152 ~~iyh~GDt~~~~~~~~~~~~~~DvallPig~~~~~~~~~~~~~~-~~~~~l~~~-~viP~Hy~------------~~~~ 217 (258)
T COG2220 152 GRVYHAGDTGYLFLIIEELDGPVDVALLPIGGYPNATMMPPEAAV-AAAEVLRPK-RVIPMHYG------------PTFP 217 (258)
T ss_pred ceEEeccCccHHHHhhhhhcCCccEEEeccCCCCCCccCCHHHHH-HHHHHhcCC-eEEeeccc------------ccCc
Confidence 8999999995411 111111 12221 11122333 233567766 89999951 1224
Q ss_pred CCcCCHHHHHHHHHhcCCCC
Q 022158 260 RLTKDEETFKSIMENLNLSY 279 (302)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~ 279 (302)
.+....+.|...+...+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~ 237 (258)
T COG2220 218 PIEEDPEEFLHALDAGGEPV 237 (258)
T ss_pred cccCCHHHHHHhhhhcCCCc
Confidence 44455677776666655443
No 42
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.37 E-value=4.2e-07 Score=86.88 Aligned_cols=123 Identities=16% Similarity=0.185 Sum_probs=87.0
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCCC---hHHHHHHHHHcCC-CeeEEecCCCCcCccCChHHHHhhC-CCCeEEeccC
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDKT---VDRDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKSKV-PGVKSIISKA 145 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~~---~~~l~~~l~~~~~-~i~~I~~TH~H~DH~gg~~~l~~~~-p~~~i~~~~~ 145 (302)
-|-+|.++.- +++.|+.|||... .-.-+..+.+... ++|.+++||.|.||++.++++.++. -..++++..+
T Consensus 25 VGRSC~ile~----kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~ 100 (668)
T KOG1137|consen 25 VGRSCHILEY----KGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHP 100 (668)
T ss_pred cCceEEEEEe----cCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccccceeEEecc
Confidence 5567889988 7999999998411 1111234444433 4788999999999999999987653 1455665543
Q ss_pred CCC-------------------------------CcceeecCCCEEEeCCeEEEEEEcCCCCCCCEEEEECCCCCCCCCc
Q 022158 146 SGS-------------------------------KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPR 194 (302)
Q Consensus 146 ~~~-------------------------------~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~ 194 (302)
+.. .....+.--+..++.|.++.+++ .||--|.+.|.++- .+-+
T Consensus 101 TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~-aGhVlgacMf~vei----agv~ 175 (668)
T KOG1137|consen 101 TKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYH-AGHVLGACMFMVEI----AGVR 175 (668)
T ss_pred hHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeec-cchhhhheeeeeee----ceEE
Confidence 210 01134444566778888888888 69999999999986 5789
Q ss_pred EEEEcccc
Q 022158 195 MAFTGDAL 202 (302)
Q Consensus 195 vlftGD~l 202 (302)
+|||||..
T Consensus 176 lLyTGd~s 183 (668)
T KOG1137|consen 176 LLYTGDYS 183 (668)
T ss_pred EEeccccc
Confidence 99999974
No 43
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.33 E-value=1.3e-06 Score=79.07 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=35.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEec
Q 022158 87 PALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (302)
Q Consensus 87 ~~iLID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~ 143 (302)
+.++||+|... ....++..-..+++||+||.|+||+.|+..|.+.+ ...+++.
T Consensus 41 ~~~lid~g~~~---~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~-~~~~~~~ 93 (269)
T COG1235 41 KTLLIDAGPDL---RDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAY-TLPIYVN 93 (269)
T ss_pred eeEEEecChhH---HhhhhcccccccCeEEEecccHHhhcChHHHHHHh-cCCcccc
Confidence 36678877421 11122211125899999999999999999999976 4455444
No 44
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.28 E-value=6.3e-06 Score=80.78 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=89.2
Q ss_pred EeecCCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHc---CCCeeEEecCCCCcCccCChHHHHhhC-CCCeEE
Q 022158 66 TFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL---GLKLVYAMNTHVHADHVTGTGLIKSKV-PGVKSI 141 (302)
Q Consensus 66 ~~~~~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~---~~~i~~I~~TH~H~DH~gg~~~l~~~~-p~~~i~ 141 (302)
+.....+..||++.- ++-.+|||||++.. --.+.+++. =.++|+|++||...-|+||+++....+ -+++||
T Consensus 8 ~g~~de~~~cyllqi----D~~~iLiDcGwd~~-f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VY 82 (764)
T KOG1135|consen 8 CGATDEGPLCYLLQI----DGVRILIDCGWDES-FDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVY 82 (764)
T ss_pred ccccCCCcceEEEEE----cCeEEEEeCCCcch-hccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEE
Confidence 334557788999998 78999999996432 222344433 335899999999999999999887653 468899
Q ss_pred eccCCC-------------------------------CCcceeecCCCEEEeCC----eEEEEEEcCCCCCCCEEEEECC
Q 022158 142 ISKASG-------------------------------SKADLHVEHGDKVSFGD----LFLEVRATPGHTLGCVTYVSGE 186 (302)
Q Consensus 142 ~~~~~~-------------------------------~~~~~~~~~g~~~~lg~----~~i~~i~~pGHt~g~~~~~~~~ 186 (302)
++-+.. +.....++-.+.+.+.| ..+.++++ ||++|...+.+..
T Consensus 83 AT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynA-GhmiGGsIWkI~k 161 (764)
T KOG1135|consen 83 ATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNA-GHMIGGSIWKISK 161 (764)
T ss_pred EecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecC-CCccCceEEEEEe
Confidence 875321 11124566667777654 46777765 9999998888765
Q ss_pred CCCCCCCcEEEEccc
Q 022158 187 GPDQPQPRMAFTGDA 201 (302)
Q Consensus 187 ~~~~~~~~vlftGD~ 201 (302)
.+..++++=|.
T Consensus 162 ----~~E~ivYavd~ 172 (764)
T KOG1135|consen 162 ----VGEDIVYAVDF 172 (764)
T ss_pred ----cCceEEEEEec
Confidence 34788888885
No 45
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.24 E-value=4.2e-06 Score=75.32 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=52.9
Q ss_pred CcEEEEc-CCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHh-h------CCCCeEEeccCCCC---------
Q 022158 86 KPALLID-PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS-K------VPGVKSIISKASGS--------- 148 (302)
Q Consensus 86 ~~~iLID-~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~-~------~p~~~i~~~~~~~~--------- 148 (302)
...+|+| .|......+.+-+. .+++||+||+|.||++|+..+.- . -+-..||.++....
T Consensus 18 ~~~ilfD~ag~g~~~~l~~k~~----~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~~ 93 (277)
T TIGR02650 18 PEEIIFDAAEEGSSTLGGKKVA----AFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEFI 93 (277)
T ss_pred chhheehhhcccchhHHhhhHh----hcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHHH
Confidence 4589999 78654444444444 46799999999999999965433 1 12245777764211
Q ss_pred ---------Ccc-eeecCCCEEEeCC----eEEEEEEcCCCC
Q 022158 149 ---------KAD-LHVEHGDKVSFGD----LFLEVRATPGHT 176 (302)
Q Consensus 149 ---------~~~-~~~~~g~~~~lg~----~~i~~i~~pGHt 176 (302)
... ..+..++.+.+.+ ..++.+.+ .|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t-~H~ 134 (277)
T TIGR02650 94 KAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFR-KHH 134 (277)
T ss_pred HHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCcc-ccc
Confidence 111 3355566665552 56666766 465
No 46
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.15 E-value=2.2e-05 Score=71.90 Aligned_cols=66 Identities=23% Similarity=0.227 Sum_probs=45.9
Q ss_pred CCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHcCC---CeeEEecCCCCcCccCChHHHHhhC------CCCeEE
Q 022158 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV------PGVKSI 141 (302)
Q Consensus 71 ~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~---~i~~I~~TH~H~DH~gg~~~l~~~~------p~~~i~ 141 (302)
....++++.. .++..|||||.... ..+...+. ++++||+||.|.||+.|++.+.... ....||
T Consensus 18 r~~~s~ll~~----~~~~~L~DcGeGt~----~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iy 89 (292)
T COG1234 18 RNVSSILLRL----EGEKFLFDCGEGTQ----HQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIY 89 (292)
T ss_pred cccceeEEEe----CCeeEEEECCHhHH----HHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEE
Confidence 4556788886 57889999996433 33333333 4799999999999999999765432 124566
Q ss_pred ecc
Q 022158 142 ISK 144 (302)
Q Consensus 142 ~~~ 144 (302)
.++
T Consensus 90 gP~ 92 (292)
T COG1234 90 GPP 92 (292)
T ss_pred CCc
Confidence 663
No 47
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.12 E-value=4.6e-05 Score=66.85 Aligned_cols=120 Identities=17% Similarity=0.234 Sum_probs=73.5
Q ss_pred EEEEEecCCCCCcEEEEcCCCC----------C---hH---HHHHHHHHcCCCeeEEecCCCCcCccCC---------hH
Q 022158 75 TYLLADVNHPDKPALLIDPVDK----------T---VD---RDLNVIKELGLKLVYAMNTHVHADHVTG---------TG 129 (302)
Q Consensus 75 ~yli~~~~~~~~~~iLID~G~~----------~---~~---~l~~~l~~~~~~i~~I~~TH~H~DH~gg---------~~ 129 (302)
+.+|.. .+-.||||||-. . .+ +..+.+.+.-.+.+.|.+||.|.||-.- ..
T Consensus 17 At~vet----~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e 92 (304)
T COG2248 17 ATFVET----KDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGE 92 (304)
T ss_pred hheeec----CCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhccc
Confidence 446666 688999999831 1 11 1222333333356889999999999865 11
Q ss_pred HHHhhCCCCeEEeccCCC-------------------CCcceeecCCCEEEeCCeEEEEEEcCCCCCC------CEEEEE
Q 022158 130 LIKSKVPGVKSIISKASG-------------------SKADLHVEHGDKVSFGDLFLEVRATPGHTLG------CVTYVS 184 (302)
Q Consensus 130 ~l~~~~p~~~i~~~~~~~-------------------~~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g------~~~~~~ 184 (302)
.-.+.|.+..+++-.++. ......+.||.+|.+|+..+++=+.--|-++ -+.+.+
T Consensus 93 ~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V 172 (304)
T COG2248 93 TAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAV 172 (304)
T ss_pred chHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEE
Confidence 222334344444432211 1335788899999999999998654335554 123344
Q ss_pred CCCCCCCCCcEEEEcccc
Q 022158 185 GEGPDQPQPRMAFTGDAL 202 (302)
Q Consensus 185 ~~~~~~~~~~vlftGD~l 202 (302)
. +++.+++|+.|+-
T Consensus 173 ~----dg~~~i~faSDvq 186 (304)
T COG2248 173 T----DGKSSIVFASDVQ 186 (304)
T ss_pred e----cCCeEEEEccccc
Confidence 4 3688999999974
No 48
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=97.47 E-value=0.00012 Score=72.87 Aligned_cols=58 Identities=21% Similarity=0.153 Sum_probs=40.1
Q ss_pred EEEEEEecCCCCCcEEEEcCCCCChHHHHHHHH-----HcCCCeeEEecCCCCcCccCChHHHHhh
Q 022158 74 YTYLLADVNHPDKPALLIDPVDKTVDRDLNVIK-----ELGLKLVYAMNTHVHADHVTGTGLIKSK 134 (302)
Q Consensus 74 ~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~-----~~~~~i~~I~~TH~H~DH~gg~~~l~~~ 134 (302)
.+++|..+ .+..||.|||..+.-++.+..- ..-.++++|++||.|+||..|+.-+.++
T Consensus 462 SS~lv~i~---~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~ 524 (746)
T KOG2121|consen 462 SSILVRID---SDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQA 524 (746)
T ss_pred EEEEEecc---CCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHHH
Confidence 57777774 3446999999765544433322 1112468999999999999999877653
No 49
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=97.29 E-value=0.00041 Score=66.63 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=65.4
Q ss_pred CeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCCCC----------CcceeecCCCEEEeCCeEEEEEEcCCCCCCCE
Q 022158 111 KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS----------KADLHVEHGDKVSFGDLFLEVRATPGHTLGCV 180 (302)
Q Consensus 111 ~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~----------~~~~~~~~g~~~~lg~~~i~~i~~pGHt~g~~ 180 (302)
...+-|+||.|.||..|+..--. ..++|++..+.. ...+.+.-++.+.+.+..+.++.. .|+||++
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~---~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~~~~vt~ldA-nHCPGa~ 187 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWS---HPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIPGIQVTLLDA-NHCPGAV 187 (481)
T ss_pred ccceeeeeccccccccccccccc---CCcccccccchhhhhhhcccChhhceeecCCCceeecceEEEEecc-ccCCCce
Confidence 35788999999999988765432 223888765542 223567778889999988888887 6999999
Q ss_pred EEEECCCCCCCCCcEEEEccccc
Q 022158 181 TYVSGEGPDQPQPRMAFTGDALL 203 (302)
Q Consensus 181 ~~~~~~~~~~~~~~vlftGD~l~ 203 (302)
.|+++. ..+..+|+|||.=+
T Consensus 188 mf~F~~---~~~~~~lhtGDFR~ 207 (481)
T KOG1361|consen 188 MFLFEL---SFGPCILHTGDFRA 207 (481)
T ss_pred EEEeec---CCCceEEecCCccc
Confidence 999976 24568999999744
No 50
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.06 E-value=0.0031 Score=58.67 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=36.1
Q ss_pred CCCcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHH---------------------------cCCCeeEEecCCCCc
Q 022158 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKE---------------------------LGLKLVYAMNTHVHA 122 (302)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~---------------------------~~~~i~~I~~TH~H~ 122 (302)
++..++||++... .+..+-+|+|. ....+...+.+ ....|...++||.|.
T Consensus 14 e~nls~~L~~~~~--~~s~ialDagt-~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ylItH~HL 90 (335)
T PF02112_consen 14 EGNLSAYLVRSIG--SNSFIALDAGT-LLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYLITHPHL 90 (335)
T ss_pred CCCcceeeeeecC--cCceEEecCcc-HHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEEecCCch
Confidence 4566788888753 46788889873 11111111111 011367899999999
Q ss_pred CccCChHH
Q 022158 123 DHVTGTGL 130 (302)
Q Consensus 123 DH~gg~~~ 130 (302)
||+.|+..
T Consensus 91 DHi~gLvi 98 (335)
T PF02112_consen 91 DHIAGLVI 98 (335)
T ss_pred hhHHHHHh
Confidence 99999854
No 51
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=94.36 E-value=0.57 Score=42.55 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=77.2
Q ss_pred CcEEEEEEecCCCCCcEEEEcCCCCChHHHHHHHHHc---CCCeeEEecCCCCcCccCChHHHHhhCCCCeEEeccCCCC
Q 022158 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL---GLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS 148 (302)
Q Consensus 72 ~~~~yli~~~~~~~~~~iLID~G~~~~~~l~~~l~~~---~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~ 148 (302)
++-+-+|.-. +|+.+|..|-. -.+++.+.++++ +..+++|+.--...-|---+..++++||+|++++.+....
T Consensus 19 ~~RMTVVrL~---~G~L~VhSPva-pT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP~A~v~~~Pg~~s 94 (285)
T PF14234_consen 19 PTRMTVVRLS---DGGLWVHSPVA-PTPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFPDAKVWAPPGQWS 94 (285)
T ss_pred cceEEEEEEC---CCCEEEECCCC-CCHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCCCCEEEeCCCccc
Confidence 3345566663 46677888864 356677777777 5589999986554558888999999999999999865311
Q ss_pred ------------CcceeecC-CCEEEe-CCeEEEEE---EcCCCCCCCEEEEECCCCCCCCCcEEEEcccccc
Q 022158 149 ------------KADLHVEH-GDKVSF-GDLFLEVR---ATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLI 204 (302)
Q Consensus 149 ------------~~~~~~~~-g~~~~l-g~~~i~~i---~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~l~~ 204 (302)
..+..+.. ...... ++.....+ ....|.-..++|+.. ..+.|+..|++++
T Consensus 95 ~p~~lp~~~~g~~~~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk------~SkTLIvTDll~n 161 (285)
T PF14234_consen 95 FPLNLPLSWLGIPRDKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHK------PSKTLIVTDLLFN 161 (285)
T ss_pred ccccCchhhcCCccccccccccCCCCchhheeeEEecccccCCCceeEEEEEEC------CCCeEEhhhchhh
Confidence 01111111 011111 12223333 334577778888864 5689999999875
No 52
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=92.17 E-value=0.42 Score=33.28 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=32.7
Q ss_pred EEEEEEecCCCCCcEEEE-cCCCCChHHHHHHHHHcCC---CeeEEecCCCC-cCccCC
Q 022158 74 YTYLLADVNHPDKPALLI-DPVDKTVDRDLNVIKELGL---KLVYAMNTHVH-ADHVTG 127 (302)
Q Consensus 74 ~~yli~~~~~~~~~~iLI-D~G~~~~~~l~~~l~~~~~---~i~~I~~TH~H-~DH~gg 127 (302)
.+.++.. +++..|+ ++|.. .+ +.+.+.+. ++..||+|+.. ||++||
T Consensus 13 p~l~l~~----d~~rYlFGn~gEG-tQ---R~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFF----DSRRYLFGNCGEG-TQ---RACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEe----CCceEEeccCCcH-HH---HHHHHcCCCccccceEEECCCCcccccCC
Confidence 3555555 4788999 99853 33 33444444 47899999999 999997
No 53
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=91.46 E-value=0.39 Score=43.15 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=48.7
Q ss_pred CeeEEecCCCCcCccCChHH----HHhhCCCCeEEeccCC----------------------CCCcceeecCCCEEEeCC
Q 022158 111 KLVYAMNTHVHADHVTGTGL----IKSKVPGVKSIISKAS----------------------GSKADLHVEHGDKVSFGD 164 (302)
Q Consensus 111 ~i~~I~~TH~H~DH~gg~~~----l~~~~p~~~i~~~~~~----------------------~~~~~~~~~~g~~~~lg~ 164 (302)
.|..-++||.|.||+.|+-. +-++. ...||....+ +.-....+++.+...++-
T Consensus 112 ~I~~y~ITH~HLDHIsGlVinSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~ 190 (356)
T COG5212 112 SINSYFITHAHLDHISGLVINSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTL 190 (356)
T ss_pred hhhheEeccccccchhceeecCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeee
Confidence 36778999999999999743 22221 2245543311 011124566666665554
Q ss_pred eEEEEEEcC---CCCCC----CEEEEECCCCCCCCCcEEEEcccc
Q 022158 165 LFLEVRATP---GHTLG----CVTYVSGEGPDQPQPRMAFTGDAL 202 (302)
Q Consensus 165 ~~i~~i~~p---GHt~g----~~~~~~~~~~~~~~~~vlftGD~l 202 (302)
..+.+++.| |-.-| +.+|.+.+. ..+.-+++.||+-
T Consensus 191 t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~n--kS~~~f~~fGDve 233 (356)
T COG5212 191 TRLTGEPFPVSHGKKTGSPSYSSMLLFRSN--KSNEFFAYFGDVE 233 (356)
T ss_pred eeecceeeeccCCcccCCcccceEEEEecC--CCcceEEEecCCC
Confidence 444444433 22122 456666653 2355688999964
No 54
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=89.43 E-value=0.25 Score=49.69 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=33.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHh
Q 022158 85 DKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS 133 (302)
Q Consensus 85 ~~~~iLID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~ 133 (302)
+|-.||||.|..--.-+...++-+. +|+.|++||.-.|..+|++-|.+
T Consensus 56 nGf~iLv~GgserKS~fwklVrHld-rVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 56 NGFNILVNGGSERKSCFWKLVRHLD-RVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred cceEEeecCCcccccchHHHHHHHh-hhhhhhhcccccCccccchHHHH
Confidence 4778999988532222223333222 58899999999999999987765
No 55
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=70.09 E-value=14 Score=33.07 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=48.6
Q ss_pred CeeEEecCCCCcCccCChHHHHhhCCCCeEEeccC--------CCCCcceeecCCC--EEEeCCeEEEEEEcCC-CCCC-
Q 022158 111 KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA--------SGSKADLHVEHGD--KVSFGDLFLEVRATPG-HTLG- 178 (302)
Q Consensus 111 ~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~--------~~~~~~~~~~~g~--~~~lg~~~i~~i~~pG-Ht~g- 178 (302)
+++.++++|.|.||...-....-.--+.++++... .+......+..++ .+.-++..+.+..+|. |..+
T Consensus 132 ~~d~~~vsh~h~dhld~~~~~~~~~~~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R 211 (343)
T KOG3798|consen 132 DLDFAVVSHDHYDHLDADAVKKITDRNPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFVKNGKTYTIWCLPAQHWGQR 211 (343)
T ss_pred CCceeccccccccccchHHHHhhhccCccceeehhhhhheecCCCCCceeEeeccchhceecCCcEEEEEEcchhhhccc
Confidence 47999999999999865443321111333333221 1111223333333 3445677788888874 3322
Q ss_pred -----------CEEEEECCCCCCCCCcEEEEcccccc
Q 022158 179 -----------CVTYVSGEGPDQPQPRMAFTGDALLI 204 (302)
Q Consensus 179 -----------~~~~~~~~~~~~~~~~vlftGD~l~~ 204 (302)
+.++. .+..+++|.||+-|.
T Consensus 212 ~L~D~Nk~LW~sw~v~------g~~nrfffaGDTGyc 242 (343)
T KOG3798|consen 212 GLFDRNKRLWSSWAVI------GENNRFFFAGDTGYC 242 (343)
T ss_pred ccccCCcceeeeeEEe------cCCceEEecCCCCcc
Confidence 32333 245689999998654
No 56
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=60.13 E-value=28 Score=29.64 Aligned_cols=51 Identities=25% Similarity=0.251 Sum_probs=32.7
Q ss_pred EEcCCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEec
Q 022158 90 LIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (302)
Q Consensus 90 LID~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~ 143 (302)
+||+|. +.-...+.|++.|.+-.+++.||+-. .+++....+.-+--+++++
T Consensus 92 iIdtg~-Tl~~aA~~Lk~~GA~~V~~~aTHgvf--s~~A~~~l~~s~Id~vvvT 142 (184)
T PF14572_consen 92 IIDTGG-TLIKAAELLKERGAKKVYACATHGVF--SGDAPERLEESPIDEVVVT 142 (184)
T ss_dssp EESSTH-HHHHHHHHHHHTTESEEEEEEEEE-----TTHHHHHHHSSESEEEEE
T ss_pred cccchH-HHHHHHHHHHHcCCCEEEEEEeCccc--CchHHHHHhhcCCeEEEEe
Confidence 455663 45555678888898878899999877 5666666655444455654
No 57
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=50.12 E-value=35 Score=31.69 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=27.6
Q ss_pred CCcEEEEc----CCCCChHHHHHHHHHcCCCeeEEecCCCCc
Q 022158 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHA 122 (302)
Q Consensus 85 ~~~~iLID----~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~ 122 (302)
++.++||| +| .+.....+.|++.|.+..+++.||+=.
T Consensus 217 Gr~viIVDDIidTG-~Tl~~aa~~Lk~~GA~~V~~~~tHglf 257 (320)
T PRK02269 217 GKKCILIDDMIDTA-GTICHAADALAEAGATEVYASCTHPVL 257 (320)
T ss_pred CCEEEEEeeecCcH-HHHHHHHHHHHHCCCCEEEEEEECccc
Confidence 34566666 66 356777788999999888899999654
No 58
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=49.03 E-value=41 Score=31.09 Aligned_cols=46 Identities=26% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCcEEEEc----CCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHh
Q 022158 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS 133 (302)
Q Consensus 85 ~~~~iLID----~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~ 133 (302)
++.++||| +|. +.-.-.+.|++.|.+-.++..||+=.= |++....+
T Consensus 214 gk~~iiVDDiIdTgG-Ti~~Aa~~Lk~~GAk~V~a~~tH~vfs--~~a~~~l~ 263 (314)
T COG0462 214 GKDVVIVDDIIDTGG-TIAKAAKALKERGAKKVYAAATHGVFS--GAALERLE 263 (314)
T ss_pred CCEEEEEeccccccH-HHHHHHHHHHHCCCCeEEEEEEchhhC--hHHHHHHh
Confidence 34455555 663 555566888999998788999998653 44444443
No 59
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=45.38 E-value=40 Score=29.08 Aligned_cols=58 Identities=14% Similarity=0.273 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCC---ChHHHHHHHHHcCCC-eeEEecCCCCcCccCChHHHHhhCCCCeEEeccCC
Q 022158 85 DKPALLIDPVDK---TVDRDLNVIKELGLK-LVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (302)
Q Consensus 85 ~~~~iLID~G~~---~~~~l~~~l~~~~~~-i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 146 (302)
++.++|+|+-.. +....++.|++.|.+ +..+.+ ..--.|+..+.+.+|+.++|+..-+
T Consensus 124 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~l----l~~~~gl~~l~~~~p~v~i~~~~iD 185 (209)
T PRK00129 124 ERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCL----VAAPEGIKALEEAHPDVEIYTAAID 185 (209)
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCCcEEEEEeec
Confidence 467899997433 345556777777754 332222 2335688999999999999987654
No 60
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=44.43 E-value=40 Score=31.29 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=28.2
Q ss_pred CCcEEEEc----CCCCChHHHHHHHHHcCCCeeEEecCCCCc
Q 022158 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHA 122 (302)
Q Consensus 85 ~~~~iLID----~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~ 122 (302)
++.+++|| +| .+..+..+.|++.|.+-.+++.||+-.
T Consensus 217 Gr~viIVDDIidTG-~Tl~~aa~~Lk~~GA~~V~~~~THgvf 257 (319)
T PRK04923 217 GKTCVLVDDLVDTA-GTLCAAAAALKQRGALKVVAYITHPVL 257 (319)
T ss_pred CCEEEEEecccCch-HHHHHHHHHHHHCCCCEEEEEEECccc
Confidence 45677777 55 356667788888998888899999876
No 61
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=43.43 E-value=69 Score=27.57 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=38.6
Q ss_pred CCcEEEEcCCCCC---hHHHHHHHHHcCCC-eeEEecCCCCcCccCChHHHHhhCCCCeEEeccCC
Q 022158 85 DKPALLIDPVDKT---VDRDLNVIKELGLK-LVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (302)
Q Consensus 85 ~~~~iLID~G~~~---~~~l~~~l~~~~~~-i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 146 (302)
+..++|+|+...+ ....++.+++.|.+ +..+.+ .+--.|+..+.+.||+.++|...-+
T Consensus 122 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~l----l~~~~gl~~l~~~~p~v~i~~~~id 183 (207)
T TIGR01091 122 ERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSI----VAAPEGIEAVEKAHPDVDIYTAAID 183 (207)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCCCEEEEEEEC
Confidence 4578999975433 45556777777765 332222 2223678889999999999987544
No 62
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=41.16 E-value=51 Score=28.28 Aligned_cols=46 Identities=24% Similarity=0.209 Sum_probs=33.4
Q ss_pred CCcEEEEc---CCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHH
Q 022158 85 DKPALLID---PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIK 132 (302)
Q Consensus 85 ~~~~iLID---~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~ 132 (302)
..+++|.| ||. +.-++...|.+.+..+-.||+| +|.|--.....++
T Consensus 48 ~pGclllDvrMPg~-sGlelq~~L~~~~~~~PVIfiT-GhgDIpmaV~AmK 96 (202)
T COG4566 48 RPGCLLLDVRMPGM-SGLELQDRLAERGIRLPVIFLT-GHGDIPMAVQAMK 96 (202)
T ss_pred CCCeEEEecCCCCC-chHHHHHHHHhcCCCCCEEEEe-CCCChHHHHHHHH
Confidence 35799999 564 4677889999999887778888 5777554444443
No 63
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=38.90 E-value=26 Score=30.28 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=37.8
Q ss_pred CCcEEEEcCCC---CChHHHHHHHHHcCCCe-----eEEecCCCCcCccCChHHHHhhCCCCeEEeccC
Q 022158 85 DKPALLIDPVD---KTVDRDLNVIKELGLKL-----VYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (302)
Q Consensus 85 ~~~~iLID~G~---~~~~~l~~~l~~~~~~i-----~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~ 145 (302)
...++|+||-. .+....++.|++.|... -.++.+- -|+..+.++||+++||...-
T Consensus 121 ~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~------~Gl~~l~~~~P~v~I~ta~i 183 (207)
T PF14681_consen 121 NRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASP------EGLERLLKAFPDVRIYTAAI 183 (207)
T ss_dssp TSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEH------HHHHHHHHHSTTSEEEEEEE
T ss_pred CCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecH------HHHHHHHHhCCCeEEEEEEE
Confidence 46789999832 23555667777777642 3344442 38999999999999998754
No 64
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.15 E-value=69 Score=29.78 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=34.8
Q ss_pred CCcEEEEc----CCCCChHHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEec
Q 022158 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (302)
Q Consensus 85 ~~~~iLID----~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~ 143 (302)
++.++||| +| .+.....+.+++.|.+--+++.||+-. .+++......-+--+|+++
T Consensus 218 gk~viIVDDIidTG-~Tl~~aa~~Lk~~GA~~V~~~~tHgif--~~~a~~~l~~s~i~~iv~T 277 (323)
T PRK02458 218 GKKAILIDDILNTG-KTFAEAAKIVEREGATEIYAVASHGLF--AGGAAEVLENAPIKEILVT 277 (323)
T ss_pred CCEEEEEcceeCcH-HHHHHHHHHHHhCCCCcEEEEEEChhc--CchHHHHHhhCCCCEEEEE
Confidence 45677777 45 345666678888888777799999865 4455433333222344444
No 65
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=36.65 E-value=53 Score=30.64 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=27.9
Q ss_pred CCcEEEEc----CCCCChHHHHHHHHHcCCCeeEEecCCCCc
Q 022158 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHA 122 (302)
Q Consensus 85 ~~~~iLID----~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~ 122 (302)
++.++||| +| .+.....+.|++.|.+..+++.||+=.
T Consensus 230 gr~vlIVDDIidTG-~Tl~~aa~~L~~~Ga~~V~~~~THglf 270 (326)
T PLN02297 230 GRHVVIVDDLVQSG-GTLIECQKVLAAHGAAKVSAYVTHGVF 270 (326)
T ss_pred CCeEEEEecccCcH-HHHHHHHHHHHHCCCcEEEEEEECccc
Confidence 45677777 45 356667788899998888899999654
No 66
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=35.60 E-value=35 Score=31.34 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=26.7
Q ss_pred CCcEEEEc----CCCCChHHHHHHHHHcCCCeeEEecCCCC
Q 022158 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVH 121 (302)
Q Consensus 85 ~~~~iLID----~G~~~~~~l~~~l~~~~~~i~~I~~TH~H 121 (302)
++.++||| +| .+.....+.|++.|.+--+++.||+=
T Consensus 211 Gr~vIIVDDIidTG-~Tl~~aa~~Lk~~GA~~V~~~~tHgv 250 (301)
T PRK07199 211 GRTPVLVDDIVSTG-RTLIEAARQLRAAGAASPDCVVVHAL 250 (301)
T ss_pred CCEEEEEecccCcH-HHHHHHHHHHHHCCCcEEEEEEEeee
Confidence 45677777 45 34666678888889887789999973
No 67
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=33.10 E-value=1.7e+02 Score=25.44 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=23.4
Q ss_pred CcEEEEccccccCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEcC-CCC
Q 022158 193 PRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPA-HDY 243 (302)
Q Consensus 193 ~~vlftGD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~i~Pg-Hg~ 243 (302)
.-++++||... ......+.+.+ +.+.+++..++++|| |++
T Consensus 43 D~viiaGDl~~----------~~~~~~~~~~l-~~l~~l~~~v~~V~GNHD~ 83 (232)
T cd07393 43 DIVLIPGDISW----------AMKLEEAKLDL-AWIDALPGTKVLLKGNHDY 83 (232)
T ss_pred CEEEEcCCCcc----------CCChHHHHHHH-HHHHhCCCCeEEEeCCccc
Confidence 45789999741 11223444555 356666544577787 884
No 68
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=31.21 E-value=49 Score=30.89 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=27.7
Q ss_pred CCcEEEEc----CCCCChHHHHHHHHHcCCCeeEEecCCCCc
Q 022158 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHA 122 (302)
Q Consensus 85 ~~~~iLID----~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~ 122 (302)
++.++||| +| .+.....+.+++.|.+..+++.||+-.
T Consensus 218 Gk~VIIVDDIi~TG-~Tl~~aa~~Lk~~GA~~V~~~atHglf 258 (332)
T PRK00553 218 NKNCLIVDDMIDTG-GTVIAAAKLLKKQKAKKVCVMATHGLF 258 (332)
T ss_pred CCEEEEEeccccch-HHHHHHHHHHHHcCCcEEEEEEEeeec
Confidence 45678888 44 345666678888898888899999865
No 69
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.77 E-value=87 Score=24.83 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=22.6
Q ss_pred cEEEEccccccCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEE
Q 022158 194 RMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIY 238 (302)
Q Consensus 194 ~vlftGD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~i~ 238 (302)
++++.||.+..+..-...+.|....++.+.+.+.+...+++.+++
T Consensus 2 ~~~~~Gds~~~g~~~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi 46 (157)
T cd01833 2 RIMPLGDSITWGDKDHEGHSGYLIDQIAAAAADWVLAAKPDVVLL 46 (157)
T ss_pred ceeecCCceeecCCCCCCCCCccHHHHHHHhhhccccCCCCEEEE
Confidence 366777766555322233445555555555543444455554444
No 70
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=30.64 E-value=85 Score=26.34 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCeeEEecCCCCcCccCChHHHHhhCCCCeEEe
Q 022158 99 DRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSII 142 (302)
Q Consensus 99 ~~l~~~l~~~~~~i~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~ 142 (302)
.+....|++.|..+| ||+.|.=| |-.-.|++.+|++++++
T Consensus 54 ~~a~~~L~~~Gf~PD-vI~~H~GW---Ge~Lflkdv~P~a~li~ 93 (171)
T PF12000_consen 54 ARAARQLRAQGFVPD-VIIAHPGW---GETLFLKDVFPDAPLIG 93 (171)
T ss_pred HHHHHHHHHcCCCCC-EEEEcCCc---chhhhHHHhCCCCcEEE
Confidence 334456667788888 77777654 55566777899888765
No 71
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=30.39 E-value=88 Score=28.49 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEcCCCC
Q 022158 217 SSQLYKSVHSQIFTLPKDTLIYPAHDY 243 (302)
Q Consensus 217 ~~~~~~sl~~~l~~l~~~~~i~PgHg~ 243 (302)
..++-+.+.+.+....|+++|+.||+.
T Consensus 139 E~eqp~~i~~Ll~~~~PDIlViTGHD~ 165 (287)
T PF05582_consen 139 EKEQPEKIYRLLEEYRPDILVITGHDG 165 (287)
T ss_pred hHHhhHHHHHHHHHcCCCEEEEeCchh
Confidence 355666666678889999999999994
No 72
>PLN02541 uracil phosphoribosyltransferase
Probab=28.46 E-value=76 Score=28.29 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=38.4
Q ss_pred CcEEEEcCCC---CChHHHHHHHHHcCCCe-eEEecCCCCcCccCChHHHHhhCCCCeEEeccCC
Q 022158 86 KPALLIDPVD---KTVDRDLNVIKELGLKL-VYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (302)
Q Consensus 86 ~~~iLID~G~---~~~~~l~~~l~~~~~~i-~~I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 146 (302)
..++|+||-. .+....++.|++.|.+. ..+|++=.=. --|+..+.+.||++++|...-+
T Consensus 158 ~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias--~~Gl~~i~~~fP~v~I~ta~ID 220 (244)
T PLN02541 158 SRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAA--PPALKKLSEKFPGLHVYAGIID 220 (244)
T ss_pred CEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEEC--HHHHHHHHHHCcCCEEEEEEEC
Confidence 4699999843 34555667788888752 1122211000 2589999999999999988654
No 73
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.26 E-value=1.3e+02 Score=27.72 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCC---ChHHHHHHHHHcCCCeeEEecCCCCc
Q 022158 85 DKPALLIDPVDK---TVDRDLNVIKELGLKLVYAMNTHVHA 122 (302)
Q Consensus 85 ~~~~iLID~G~~---~~~~l~~~l~~~~~~i~~I~~TH~H~ 122 (302)
++.++|||.-.. +.....+.|++.|.+--.++.||.=.
T Consensus 201 gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~ 241 (304)
T PRK03092 201 GRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVL 241 (304)
T ss_pred CCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccC
Confidence 456888886432 45556677778888766788899743
No 74
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=25.25 E-value=1.1e+02 Score=28.41 Aligned_cols=59 Identities=24% Similarity=0.323 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcCC--CCeEEEcCCCCCCCCcccHHHHHHhCCCCcCCHHHHHHHHHhcCCCCCc
Q 022158 217 SSQLYKSVHSQIFTLP--KDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEETFKSIMENLNLSYPK 281 (302)
Q Consensus 217 ~~~~~~sl~~~l~~l~--~~~~i~PgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 281 (302)
...|.+++++.+.+++ +..+++..||- +....+ .-.||....++....++++++.+..+
T Consensus 166 I~a~a~~I~~~~~~~~~~~~~llfSaHgl----P~~~~~--~GDpY~~q~~~t~~li~e~lg~~~~~ 226 (320)
T COG0276 166 IEALADSIREKLAKHPRDDDVLLFSAHGL----PKRYID--EGDPYPQQCQETTRLIAEALGLPEEE 226 (320)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEecCCC----chhhhh--cCCchHHHHHHHHHHHHHHcCCCchh
Confidence 3667788888888874 66789999993 332222 25678877788888888888875554
No 75
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=24.79 E-value=1.3e+02 Score=23.49 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=9.0
Q ss_pred CCcEEEEccccc
Q 022158 192 QPRMAFTGDALL 203 (302)
Q Consensus 192 ~~~vlftGD~l~ 203 (302)
-.-++++||.+.
T Consensus 36 ~d~vi~~GDl~~ 47 (144)
T cd07400 36 PDLVVITGDLTQ 47 (144)
T ss_pred CCEEEECCCCCC
Confidence 345899999864
No 76
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=24.33 E-value=3e+02 Score=26.84 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=26.8
Q ss_pred CCcEEEEc----CCCCChHHHHHHHHHcCCCeeEEecCCCCc
Q 022158 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHA 122 (302)
Q Consensus 85 ~~~~iLID----~G~~~~~~l~~~l~~~~~~i~~I~~TH~H~ 122 (302)
+..++||| +| .+.....+.|++.|.+-.+++.||+-.
T Consensus 335 Gk~vIIVDDIIdTG-~Tl~~aa~~Lk~~GA~~V~~~~THglf 375 (439)
T PTZ00145 335 DSDVIIVDDMIDTS-GTLCEAAKQLKKHGARRVFAFATHGLF 375 (439)
T ss_pred CCEEEEEcceeCcH-HHHHHHHHHHHHcCCCEEEEEEEcccC
Confidence 45677777 45 345556678888888877899999876
No 77
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=24.24 E-value=1.9e+02 Score=26.71 Aligned_cols=47 Identities=34% Similarity=0.396 Sum_probs=31.0
Q ss_pred EEEEEEecCCCCCcEEEEcCCC---CChHHHHHHHHHcCCCeeEEecCCCCc
Q 022158 74 YTYLLADVNHPDKPALLIDPVD---KTVDRDLNVIKELGLKLVYAMNTHVHA 122 (302)
Q Consensus 74 ~~yli~~~~~~~~~~iLID~G~---~~~~~l~~~l~~~~~~i~~I~~TH~H~ 122 (302)
-..++.+.. +.-++|||--. .+.-.-.+.|.+.|.+-.+.++||+=.
T Consensus 205 ~m~LVGDv~--gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVf 254 (316)
T KOG1448|consen 205 RMVLVGDVK--GKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVF 254 (316)
T ss_pred EEEEEeccC--CcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceec
Confidence 466777764 56788888321 234444466677788777899999743
No 78
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=23.72 E-value=1.8e+02 Score=25.25 Aligned_cols=56 Identities=14% Similarity=0.312 Sum_probs=37.1
Q ss_pred CCcEEEEcCCC---CChHHHHHHHHHcC-CC-eeE--EecCCCCcCccCChHHHHhhCCCCeEEeccCC
Q 022158 85 DKPALLIDPVD---KTVDRDLNVIKELG-LK-LVY--AMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (302)
Q Consensus 85 ~~~~iLID~G~---~~~~~l~~~l~~~~-~~-i~~--I~~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 146 (302)
++.++++||-. .+.-..++.|++.| .+ |.. ++.+ =-|+..+.+.+|+++||...-+
T Consensus 124 ~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~vAa------peGi~~v~~~~p~v~I~ta~iD 186 (210)
T COG0035 124 ERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSLVAA------PEGIKAVEKAHPDVEIYTAAID 186 (210)
T ss_pred CCeEEEECchhhccHhHHHHHHHHHHhCCCceEEEEEEEec------HHHHHHHHHhCCCCeEEEEEec
Confidence 57899999832 34555667788885 22 222 2221 2488899999999999987544
No 79
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=22.24 E-value=1.4e+02 Score=26.56 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=24.5
Q ss_pred cEEEEccccccCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEcC-CCC
Q 022158 194 RMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPA-HDY 243 (302)
Q Consensus 194 ~vlftGD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~i~Pg-Hg~ 243 (302)
-++++||..- .++.+++.. +.+.+..++..+.++|| |+.
T Consensus 58 ~vvitGDl~~----------~~~~~~~~~-~~~~l~~l~~Pv~~v~GNHD~ 97 (275)
T PRK11148 58 LIVATGDLAQ----------DHSSEAYQH-FAEGIAPLRKPCVWLPGNHDF 97 (275)
T ss_pred EEEECCCCCC----------CCCHHHHHH-HHHHHhhcCCcEEEeCCCCCC
Confidence 4789999763 223344433 33467777666788887 884
No 80
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=21.69 E-value=1.1e+02 Score=28.96 Aligned_cols=47 Identities=9% Similarity=0.096 Sum_probs=26.8
Q ss_pred CcEEEEccccccCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEcC-CCCCC
Q 022158 193 PRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPA-HDYKG 245 (302)
Q Consensus 193 ~~vlftGD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~i~Pg-Hg~~~ 245 (302)
.-+|++||++=... .+......+.+.++ ++......+++++| |+...
T Consensus 42 D~vliAGDlFd~~~-----Ps~~a~~~~~~~l~-~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 42 DFVLIAGDLFDTNN-----PSPRALKLFLEALR-RLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred CEEEEccccccCCC-----CCHHHHHHHHHHHH-HhccCCCcEEEecCCCCchh
Confidence 35899999762211 11223344555564 66655555688887 88543
No 81
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=21.42 E-value=59 Score=29.62 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHhcCCCCeEEEcCCCC
Q 022158 216 SSSQLYKSVHSQIFTLPKDTLIYPAHDY 243 (302)
Q Consensus 216 ~~~~~~~sl~~~l~~l~~~~~i~PgHg~ 243 (302)
...|..+|.-+|-...++.-.++||||.
T Consensus 232 ~~GDL~ES~lKR~~gVKDSG~llPGHGG 259 (285)
T PRK11624 232 VLGDLTESMFKREAGIKDSGHLIPGHGG 259 (285)
T ss_pred HHhHHHHHHHhhccCCCCCcCcCCCcCc
Confidence 3467788887777888887899999993
No 82
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=21.14 E-value=98 Score=28.43 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCCC---hHHHHHHHHHcCCCeeEEecCCCCc
Q 022158 85 DKPALLIDPVDKT---VDRDLNVIKELGLKLVYAMNTHVHA 122 (302)
Q Consensus 85 ~~~~iLID~G~~~---~~~l~~~l~~~~~~i~~I~~TH~H~ 122 (302)
++.++|||....+ .....+.+++.|.+-..++.||.-.
T Consensus 202 g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~ 242 (302)
T PLN02369 202 GKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVF 242 (302)
T ss_pred CCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeee
Confidence 4668999975433 4445567777788777899999754
No 83
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=20.48 E-value=1e+02 Score=31.06 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=28.4
Q ss_pred CCcCccCChHHHHhhCCCCeEEeccCCCCCcc-----eeecCCCEEEeCCeEEEEEEcCCCCC
Q 022158 120 VHADHVTGTGLIKSKVPGVKSIISKASGSKAD-----LHVEHGDKVSFGDLFLEVRATPGHTL 177 (302)
Q Consensus 120 ~H~DH~gg~~~l~~~~p~~~i~~~~~~~~~~~-----~~~~~g~~~~lg~~~i~~i~~pGHt~ 177 (302)
+|-|| |=..|...+.+..|.+.+.-+.... ..+. .|..++|+.||||..
T Consensus 160 GHVDH--GKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-------~G~~iTFLDTPGHaA 213 (683)
T KOG1145|consen 160 GHVDH--GKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-------SGKSITFLDTPGHAA 213 (683)
T ss_pred ecccC--ChhhHHHHHhhCceehhhcCCccceeceEEEecC-------CCCEEEEecCCcHHH
Confidence 46677 4455555554666666554332211 1222 356789999999974
No 84
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=20.29 E-value=1.8e+02 Score=26.41 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEcCCCC
Q 022158 218 SQLYKSVHSQIFTLPKDTLIYPAHDY 243 (302)
Q Consensus 218 ~~~~~sl~~~l~~l~~~~~i~PgHg~ 243 (302)
.++-+.+.+.+....|+++|+.||+.
T Consensus 139 ~eqp~~i~~Ll~~~~PDIlViTGHD~ 164 (283)
T TIGR02855 139 KEMPEKVLDLIEEVRPDILVITGHDA 164 (283)
T ss_pred hhchHHHHHHHHHhCCCEEEEeCchh
Confidence 34445555567788999999999994
Done!