BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022160
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 164/292 (56%), Gaps = 10/292 (3%)
Query: 6 SDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYW-- 63
SD + +E L A DWG LINHG+ + L+E++K+ EFF L +EEK+KY
Sbjct: 57 SDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYAND 116
Query: 64 QQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYXXXXXXXXXXXXXXXDTLEAHSKEM 123
Q G ++GYG + +L+W D F P + ++K +
Sbjct: 117 QATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCL 176
Query: 124 NNLAQKVLNQMAKTLRMDPNDMKELFEGGMQ----SMRMNYCPPCPQPELVIGLNSHSDA 179
LA KV ++ L ++P+ +++ GG++ M++NY P CPQPEL +G+ +H+D
Sbjct: 177 RLLATKVFKALSVGLGLEPDRLEKEV-GGLEELLLQMKINYYPKCPQPELALGVEAHTDV 235
Query: 180 AGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNT 239
+ L+ +L N V GLQ+ +G WV K +PD+ +++IGD LEI++NG Y+SI HRG VN
Sbjct: 236 SALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNK 294
Query: 240 KKERLSIATF-HTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLK-GYFGRE 289
+K R+S A F PK + L P P +++ E+PA F A++++ FG+E
Sbjct: 295 EKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKE 346
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 164/292 (56%), Gaps = 10/292 (3%)
Query: 6 SDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYW-- 63
SD + +E L A DWG LINHG+ + L+E++K+ EFF L +EEK+KY
Sbjct: 56 SDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYAND 115
Query: 64 QQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYXXXXXXXXXXXXXXXDTLEAHSKEM 123
Q G ++GYG + +L+W D F P + ++K +
Sbjct: 116 QATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCL 175
Query: 124 NNLAQKVLNQMAKTLRMDPNDMKELFEGGMQ----SMRMNYCPPCPQPELVIGLNSHSDA 179
LA KV ++ L ++P+ +++ GG++ M++NY P CPQPEL +G+ +H+D
Sbjct: 176 RLLATKVFKALSVGLGLEPDRLEKEV-GGLEELLLQMKINYYPKCPQPELALGVEAHTDV 234
Query: 180 AGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNT 239
+ L+ +L N V GLQ+ +G WV K +PD+ +++IGD LEI++NG Y+SI HRG VN
Sbjct: 235 SALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNK 293
Query: 240 KKERLSIATF-HTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLK-GYFGRE 289
+K R+S A F PK + L P P +++ E+PA F A++++ FG+E
Sbjct: 294 EKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKE 345
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 161/292 (55%), Gaps = 10/292 (3%)
Query: 6 SDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYW-- 63
SD + +E L A DWG LINHG+ + L E++K+ EFF L +EEK+KY
Sbjct: 57 SDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYAND 116
Query: 64 QQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYXXXXXXXXXXXXXXXDTLEAHSKEM 123
Q G ++GYG + +L+W D F P + ++K +
Sbjct: 117 QATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCL 176
Query: 124 NNLAQKVLNQMAKTLRMDPNDMKELFEGGMQSM----RMNYCPPCPQPELVIGLNSHSDA 179
LA KV ++ L ++P+ +++ GG++ + ++NY P CPQPEL +G+ +H+D
Sbjct: 177 RLLATKVFKALSVGLGLEPDRLEKEV-GGLEELLLQXKINYYPKCPQPELALGVEAHTDV 235
Query: 180 AGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNT 239
+ L+ +L N V GLQ+ +G WV K +PD+ + +IGD LEI++NG Y+SI HRG VN
Sbjct: 236 SALTFILH-NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNK 294
Query: 240 KKERLSIATF-HTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLK-GYFGRE 289
+K R+S A F PK + L P P ++ E+PA F A++++ FG+E
Sbjct: 295 EKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKLFGKE 346
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 149/292 (51%), Gaps = 13/292 (4%)
Query: 8 SGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPG 67
+G + E + AC +WGFF+L+NHG+ + + +++ +K E++ K
Sbjct: 13 NGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASK 72
Query: 68 DVEGYGQAFVMSEETKLDWSDMFLMSTLPTYXXXXXXXXXXXXXXXDTLEAHSKEMNNLA 127
+EG V +E T DW F + LP + +K + LA
Sbjct: 73 ALEG-----VQAEVTDXDWESTFFLKHLPI--SNISEVPDLDEEYREVXRDFAKRLEKLA 125
Query: 128 QKVLNQMAKTLRMDPNDMKELFEGGMQ---SMRMNYCPPCPQPELVIGLNSHSDAAGLSI 184
+++L+ + + L ++ +K F G +++ PPCP+P+L+ GL +H+DA G+ +
Sbjct: 126 EELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIIL 185
Query: 185 LLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTKKERL 244
L Q ++V GLQ+ KDG W+ + P + ++N+GD LE+ITNG Y+S+ HR R
Sbjct: 186 LFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARX 245
Query: 245 SIATFHTPKIEGDLGPAPSLL---TPETPALFRRIGVAEYLKGYFGRELRGK 293
S+A+F+ P + + PAP+L+ E ++ + +Y K Y G + + K
Sbjct: 246 SLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAK 297
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 13/246 (5%)
Query: 17 ENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAF 76
+ L + +GF L ++ + + I+ FF LP+E KK+Y G GY F
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGY-IPF 82
Query: 77 VMSEETKLDWSDM----FLMSTLPTYXXXXXXXXXXXXXXXDTLEAHS-----KEMNNLA 127
+ D D+ LP H ++
Sbjct: 83 GVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXG 142
Query: 128 QKVLNQMAKTLRMDPNDMKELFEGGMQSMRMNYCPPCPQPELVIGLNSHSDAAGLSILLQ 187
KVL +A L+++ + K + G +R+ + PP P+ + +H D +++LL
Sbjct: 143 GKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLG 202
Query: 188 INEVDGLQI-KKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTKKERLSI 246
E GL++ +DG W+PI P P +INIGD LE +TN + S HR VN ER +
Sbjct: 203 AEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGV 260
Query: 247 ATFHTP 252
+ TP
Sbjct: 261 PRYSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 117/278 (42%), Gaps = 43/278 (15%)
Query: 8 SGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPG 67
+ DS +E+L R+ GF L NH + L+E++ E FF E K ++
Sbjct: 11 AADSAKRFVESL----RETGFGVLSNHPIDKELVERIYTEWQAFFN--SEAKNEFXFNRE 64
Query: 68 DVEGYGQAFVMSEETKLDWSDMFLMSTLPTYXXXXXXXXXXXXXXXDTLEAHSKEMNNLA 127
+G+ A + SE K + + Y + L A+ ++ N LA
Sbjct: 65 THDGFFPASI-SETAK-----GHTVKDIKEYYHVYPWGRIPDSLRANIL-AYYEKANTLA 117
Query: 128 QKVLNQMAKTLRMDPNDMKELFEGGMQS---------MRMNYCPPCPQPEL--VIGLNSH 176
++L + P+++K F + +R+ + PP E I +H
Sbjct: 118 SELLEWIET---YSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAH 174
Query: 177 SDAAGLSILLQINEVDGLQIK-KDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHR- 234
D +++L NE GLQ+K KDG W+ + IINIGD L+ ++G + S HR
Sbjct: 175 EDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRV 233
Query: 235 ----GTVNTKKERLSIATFHTPKIEGDLGPAPSLLTPE 268
GT TK R+S+ F L P PS++ E
Sbjct: 234 INPEGTDKTKS-RISLPLF--------LHPHPSVVLSE 262
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 107/271 (39%), Gaps = 35/271 (12%)
Query: 4 LLSDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEF-FKLPMEEK--- 59
L D + + + A RD GFF +NHG++ +++L Q+ EF + EEK
Sbjct: 17 LFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKEFHMSITPEEKWDL 73
Query: 60 --KKYWQQPGDVEGYGQAFVMSEETKLDWSDMFL-----------MSTLPTYXXXXXXXX 106
+ Y ++ D G + + ++ S +L + PT+
Sbjct: 74 AIRAYNKEHQDQVRAGYYLSIPGKKAVE-SFCYLNPNFTPDHPRIQAKTPTHEVNVWPDE 132
Query: 107 XXXXXXXDTLEAHSKEMNNLAQKVLNQMAKTLRMDPNDMKELFE-----GGMQSMRMNYC 161
D E + ++ L+ +L A L + N F+ + +R Y
Sbjct: 133 TKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYL 192
Query: 162 PPCPQPELVIGLNS-------HSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFII 214
P P+ + + H D + +++L Q N V LQ++ + I+ ++I
Sbjct: 193 DPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLI 251
Query: 215 NIGDVLEIITNGIYRSIEHR-GTVNTKKERL 244
N G + +TN Y++ HR VN +++ L
Sbjct: 252 NCGSYMAHLTNNYYKAPIHRVKWVNAERQSL 282
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 107/271 (39%), Gaps = 35/271 (12%)
Query: 4 LLSDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEF-FKLPMEEK--- 59
L D + + + A RD GFF +NHG++ +++L Q+ EF + EEK
Sbjct: 17 LFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKEFHMSITPEEKWDL 73
Query: 60 --KKYWQQPGDVEGYGQAFVMSEETKLDWSDMFL-----------MSTLPTYXXXXXXXX 106
+ Y ++ D G + + ++ S +L + PT+
Sbjct: 74 AIRAYNKEHQDQVRAGYYLSIPGKKAVE-SFCYLNPNFTPDHPRIQAKTPTHEVNVWPDE 132
Query: 107 XXXXXXXDTLEAHSKEMNNLAQKVLNQMAKTLRMDPNDMKELFE-----GGMQSMRMNYC 161
D E + ++ L+ +L A L + N F+ + +R Y
Sbjct: 133 TKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYL 192
Query: 162 PPCPQPELVIGLNS-------HSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFII 214
P P+ + + H D + +++L Q N V LQ++ + I+ ++I
Sbjct: 193 DPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLI 251
Query: 215 NIGDVLEIITNGIYRSIEHRGT-VNTKKERL 244
N G + +TN Y++ HR VN +++ L
Sbjct: 252 NCGSYMAHLTNNYYKAPIHRVKWVNAERQSL 282
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 17/222 (7%)
Query: 24 RDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETK 83
RD G F L + G++ + ++ K + +FF+ E +K+ P G + SE T
Sbjct: 47 RDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTA 106
Query: 84 L-----DWSDMFLMSTLPTYXXXXXXXXXXXXXXXDTLEAHSKEMNNLAQKVLNQMAKTL 138
+SD + Y + ++ V ++ +
Sbjct: 107 QITNTGSYSDYSMC-----YSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRAT 161
Query: 139 RMDPNDMKELFEGGMQSMRMNYCPPCPQ----PELVIGLNSHSDAAGLSILLQINEVDG- 193
+P+ E F +R Y P P+ E + + H D + ++++ Q +G
Sbjct: 162 GTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGF 221
Query: 194 --LQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEH 233
LQ + G + + PDA ++ G + ++T G ++ H
Sbjct: 222 VSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRH 263
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 17/222 (7%)
Query: 24 RDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETK 83
RD G F L + G++ + ++ K + +FF+ E +K+ P G + SE T
Sbjct: 27 RDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTA 86
Query: 84 L-----DWSDMFLMSTLPTYXXXXXXXXXXXXXXXDTLEAHSKEMNNLAQKVLNQMAKTL 138
+SD + Y + ++ V ++ +
Sbjct: 87 QITNTGSYSDYSMC-----YSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRAT 141
Query: 139 RMDPNDMKELFEGGMQSMRMNYCPPCPQ----PELVIGLNSHSDAAGLSILLQINEVDG- 193
+P+ E F +R Y P P+ E + + H D + ++++ Q +G
Sbjct: 142 GTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGF 201
Query: 194 --LQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEH 233
LQ + G + + PDA ++ G + ++T G ++ H
Sbjct: 202 VSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 17/222 (7%)
Query: 24 RDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETK 83
RD G F L + G++ + ++ K + +FF+ E +K+ P G + SE T
Sbjct: 27 RDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTA 86
Query: 84 L-----DWSDMFLMSTLPTYXXXXXXXXXXXXXXXDTLEAHSKEMNNLAQKVLNQMAKTL 138
+SD + Y + ++ V ++ +
Sbjct: 87 QITNTGSYSDYSMC-----YSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRAT 141
Query: 139 RMDPNDMKELFEGGMQSMRMNYCPPCPQ----PELVIGLNSHSDAAGLSILLQINEVDG- 193
+P+ E F +R Y P P+ E + + H D + ++++ Q +G
Sbjct: 142 GTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGF 201
Query: 194 --LQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEH 233
LQ + G + + PDA ++ G + ++T G ++ H
Sbjct: 202 VSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 17/222 (7%)
Query: 24 RDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETK 83
RD G F L + G++ + ++ K + +FF+ E +K+ P G + SE T
Sbjct: 27 RDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTA 86
Query: 84 L-----DWSDMFLMSTLPTYXXXXXXXXXXXXXXXDTLEAHSKEMNNLAQKVLNQMAKTL 138
+SD + Y + ++ V ++ +
Sbjct: 87 QITNTGSYSDYSMC-----YSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRAT 141
Query: 139 RMDPNDMKELFEGGMQSMRMNYCPPCPQ----PELVIGLNSHSDAAGLSILLQINEVDG- 193
+P+ E F +R Y P P+ E + + H D + ++++ Q +G
Sbjct: 142 GTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGF 201
Query: 194 --LQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEH 233
LQ + G + + PDA ++ G + ++T G ++ H
Sbjct: 202 VSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 17/222 (7%)
Query: 24 RDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETK 83
RD G F L + G++ + ++ K + +FF+ E +K+ P G + SE T
Sbjct: 27 RDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTA 86
Query: 84 L-----DWSDMFLMSTLPTYXXXXXXXXXXXXXXXDTLEAHSKEMNNLAQKVLNQMAKTL 138
+SD + Y + ++ V ++ +
Sbjct: 87 QITNTGSYSDYSMC-----YSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRAT 141
Query: 139 RMDPNDMKELFEGGMQSMRMNYCPPCPQ----PELVIGLNSHSDAAGLSILLQINEVDG- 193
+P+ E F +R Y P P+ E + + H D + ++++ Q +G
Sbjct: 142 GTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGF 201
Query: 194 --LQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEH 233
LQ + G + + PDA ++ G + ++T G ++ H
Sbjct: 202 VSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2
Length = 360
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 178 DAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGI 227
D + IL ++VD ++ ++DG W P++P +A ++ +I ++ +
Sbjct: 272 DGLFMEILNDCSDVDEIKFQEDGSWCPMRPKKEAMKVSSQPCTKIESSSV 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,896,467
Number of Sequences: 62578
Number of extensions: 356368
Number of successful extensions: 870
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 22
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)