BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022161
(301 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S834|CLPP5_ARATH ATP-dependent Clp protease proteolytic subunit 5, chloroplastic
OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1
Length = 298
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/303 (69%), Positives = 246/303 (81%), Gaps = 10/303 (3%)
Query: 1 MAQSCAAALSSTAIFAA-FCNHFPA----ESHSSSLRFSPLRLRKMIVSSNRERKCEKFG 55
MA +C + +S+ F A F + P +S SL F PLR RK + + +
Sbjct: 1 MAHACVSTSASSLRFTAGFVSASPNGSSFDSPKLSLPFEPLRSRKTNKLVSDRKNWKNST 60
Query: 56 VKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNV 115
KA Y+ + + + +G+WSIR+DL+VPSSPY P YAQG+ GPPPM+ RFQ++
Sbjct: 61 PKAVYSGNLWTPEIPSP--QGVWSIRDDLQVPSSPYFPAYAQGQ---GPPPMVQERFQSI 115
Query: 116 LSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDT 175
+SQLFQ+RIIRCGG V+DDMANIIVAQLLYLDAVDP KDI+MY+NSPGGSVTAGMAIFDT
Sbjct: 116 ISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDT 175
Query: 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQA 235
+RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ+DID+QA
Sbjct: 176 MRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQA 235
Query: 236 NEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPV 295
NEMLHHKANLNGYL+YHTGQ+LEKIN+DTDRDFFMSA+EAK+YGLIDGV+MNP K LQP+
Sbjct: 236 NEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPL 295
Query: 296 AAA 298
AAA
Sbjct: 296 AAA 298
>sp|Q3MFR5|CLPP1_ANAVT ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3
SV=1
Length = 204
Score = 255 bits (652), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 122/183 (66%), Positives = 150/183 (81%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RII G V+ ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAGM IF
Sbjct: 18 DIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT++HIRPDV T+C GLAASMGAFLLSAGTKGKR SLP+SRIMIHQPLGGAQG +DI++
Sbjct: 78 DTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIHQPLGGAQGQATDIEI 137
Query: 234 QANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 293
QA E+L+HK LN YL+ HTGQ +E+I EDT+RDFFMS +EA+DYGLID V+ +
Sbjct: 138 QAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEARDYGLIDQVIDRHAAGSR 197
Query: 294 PVA 296
PVA
Sbjct: 198 PVA 200
>sp|Q8YXH5|CLPP1_NOSS1 ATP-dependent Clp protease proteolytic subunit 1 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=clpP1 PE=3 SV=1
Length = 204
Score = 254 bits (648), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 121/183 (66%), Positives = 149/183 (81%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RI+ G V+ ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAGM IF
Sbjct: 18 DIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT++HIRPDV T+C GLAASMGAFLLSAG KGKR SLP+SRIMIHQPLGGAQG +DI++
Sbjct: 78 DTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQATDIEI 137
Query: 234 QANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 293
QA E+L+HK LN YL+ HTGQ +E+I EDT+RDFFMS +EAKDYGLID V+ +
Sbjct: 138 QAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEAKDYGLIDQVIDRHAAGSR 197
Query: 294 PVA 296
PVA
Sbjct: 198 PVA 200
>sp|Q8YQX8|CLPP2_NOSS1 ATP-dependent Clp protease proteolytic subunit 2 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=clpP2 PE=3 SV=1
Length = 232
Score = 247 bits (630), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 120/175 (68%), Positives = 143/175 (81%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G P++D +AN IVAQLL+LDA D KDI +Y+NSPGGSV AGM
Sbjct: 42 RAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGM 101
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DTI+ IRPDV T+C GLAASMGAFLL+AGTKGKR SLP+SRIMIHQPLGGAQG D
Sbjct: 102 AIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAID 161
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
I++QA E+L+ KA LN L+ HTGQ LE+I DTDRDFFMSAEEAK+YGLID V+
Sbjct: 162 IEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKNYGLIDQVI 216
>sp|Q3M726|CLPP3_ANAVT ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=clpP3 PE=3
SV=2
Length = 214
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/175 (68%), Positives = 143/175 (81%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G P++D +AN IVAQLL+LDA D KDI +Y+NSPGGSV AGM
Sbjct: 24 RAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGM 83
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DTI+ IRPDV T+C GLAASMGAFLL+AGTKGKR SLP+SRIMIHQPLGGAQG D
Sbjct: 84 AIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAID 143
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
I++QA E+L+ KA LN L+ HTGQ LE+I DTDRDFFMSAEEAK+YGLID V+
Sbjct: 144 IEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKNYGLIDQVI 198
>sp|C0QGT0|CLPP_DESAH ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium
autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2)
GN=clpP PE=3 SV=1
Length = 205
Score = 244 bits (623), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 151/187 (80%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G ++D++AN+IVAQLL+L++ DP KDI Y+NSPGG VTAGM
Sbjct: 16 RAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDINFYINSPGGVVTAGM 75
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
A++DT+++I+PDV+TVC+G AASMGA LL+AG KGKR+SLPNSRIMIHQPLGGAQG SD
Sbjct: 76 AVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASD 135
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 290
I +QANE+L K L+G LS HTGQ +KI+EDTDRDFFMS ++AK+YGL+D VV + +
Sbjct: 136 IKIQANEILRMKEVLSGILSKHTGQNFDKISEDTDRDFFMSGDQAKEYGLVDHVVASRDE 195
Query: 291 ILQPVAA 297
+ + AA
Sbjct: 196 LEKAEAA 202
>sp|P54416|CLPP1_SYNY3 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=clpP1 PE=3 SV=1
Length = 198
Score = 243 bits (621), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 114/175 (65%), Positives = 145/175 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RI+ G V D+ AN++VAQLL+L+A DP KDI +Y+NSPGGSV+AG+
Sbjct: 14 RAFDIYSRLLRERIVFLGQEVRDENANLVVAQLLFLEAEDPEKDIYLYINSPGGSVSAGL 73
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
IFDT+ IRPDV T+C+GLAASMGAFLLSAG KGKR SLPNSRIMIHQPLGGAQG +D
Sbjct: 74 GIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLGGAQGQATD 133
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
I++QA E+L+ KA LN +L+ HTG++LE+I DT+RDFFMSAEE+K+YGLID V+
Sbjct: 134 IEIQAKEILYLKALLNQHLANHTGKSLEEITADTERDFFMSAEESKEYGLIDQVI 188
>sp|Q2JIP1|CLPP2_SYNJB ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-2-3B'a(2-13)) GN=clpP2 PE=3 SV=1
Length = 200
Score = 243 bits (620), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/189 (62%), Positives = 151/189 (79%), Gaps = 3/189 (1%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G V+DD+AN+IVAQ+LYL++ DP KDI +Y+NSPGGSV AGM
Sbjct: 14 RAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGM 73
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++HI+PDVST+C+GLAASMGAFLL+ GTKGKR +LP++RIMIHQPLGGAQG +D
Sbjct: 74 AIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPATD 133
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 290
I++QA E+L K +LN L+YHTGQ LE+I DTDRD FM+ E+AK+YGLID V+ K
Sbjct: 134 IEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVI---SK 190
Query: 291 ILQPVAAAA 299
QP AA
Sbjct: 191 RPQPTLAAV 199
>sp|Q2JV68|CLPP2_SYNJA ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1
Length = 200
Score = 240 bits (612), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 112/175 (64%), Positives = 145/175 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G V+DD+AN+IVAQ+LYL++ DP KDI +Y+NSPGGSV AGM
Sbjct: 14 RAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGM 73
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++HI+PDVST+C+GLAASMGAFLL+ G KGKR +LP++RIMIHQPLGGAQG +D
Sbjct: 74 AIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQGPATD 133
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
I++QA E+L K +LN L+YHTGQ LE+I DTDRD FM+ E+AK+YGLID V+
Sbjct: 134 IEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVI 188
>sp|Q8DLI2|CLPP1_THEEB ATP-dependent Clp protease proteolytic subunit 1
OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP1
PE=3 SV=1
Length = 229
Score = 240 bits (612), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/181 (65%), Positives = 143/181 (79%), Gaps = 6/181 (3%)
Query: 111 RFQNVLSQLFQHRIIRCGGP------VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG 164
R ++ S+L + RII GG ++D +A+ IVAQLL+LDA DP KDI +Y+NSPGG
Sbjct: 41 RAFDIYSRLLRERIIFLGGGAGDRRGIDDAVADSIVAQLLFLDAEDPEKDIYLYINSPGG 100
Query: 165 SVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA 224
SVTAGMAI+DT++HIRPDV T+C GLAASMGAFLLS GT GKR +LPN+RIMIHQPLGGA
Sbjct: 101 SVTAGMAIYDTMKHIRPDVCTLCFGLAASMGAFLLSGGTPGKRMALPNARIMIHQPLGGA 160
Query: 225 QGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGV 284
QG DI++QA E+L+HK LN LS HTGQ +E+I DT+RDFFMSAEEAK YGLID V
Sbjct: 161 QGQAVDIEIQAREILYHKRKLNELLSQHTGQPIERIEADTERDFFMSAEEAKAYGLIDQV 220
Query: 285 V 285
V
Sbjct: 221 V 221
>sp|Q59993|CLPP2_SYNY3 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=clpP2 PE=3 SV=1
Length = 226
Score = 239 bits (611), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 115/179 (64%), Positives = 143/179 (79%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G PV+D +A+ IVAQLL+LDA DP KDI +Y+NSPGGSV AG+
Sbjct: 36 RAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGL 95
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ IRPDV T+C GLAASMGAFLLS G KGKR +LP+SRIMIHQPLGGAQG +
Sbjct: 96 AIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVE 155
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPH 289
I++QA E+L+ K LN L HTGQ +EK+ EDT+RDFFMSAEEAK+YGLID V+ P+
Sbjct: 156 IEIQAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKEYGLIDQVISRPN 214
>sp|Q0AWF0|CLPP_SYNWW ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas
wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3
SV=1
Length = 200
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 107/180 (59%), Positives = 148/180 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G ++D +AN+++AQLL+L+A DP+KDI +Y+NSPGGS+TAGM
Sbjct: 17 RSYDIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAGM 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++IRPDVST+CVGLAASMGAFLL+AG KGKRY+LPN+ IMIHQP GG QG +D
Sbjct: 77 AIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATD 136
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 290
I++ A +++ K +LN L+ TGQ LE+I +DTDRD+FM+A+EAK+YG+ID V+ +P K
Sbjct: 137 IEIHARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKEYGIIDEVISHPKK 196
>sp|Q5N665|CLPP1_SYNP6 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=clpP1 PE=3 SV=1
Length = 197
Score = 238 bits (608), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/175 (66%), Positives = 139/175 (79%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G PV D+AN IVAQLL+L+A DP KDI +Y+NSPGGSV G+
Sbjct: 14 RAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGL 73
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
IFDT+ HIRPDVSTVCVGLAASMGAFLL+AG KGKR SL +SRIMIHQPLGGAQG D
Sbjct: 74 GIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKD 133
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
I++QANE+L+ K NLN L+ TGQ L +I +DTDRDFFMSA EA +YGLID V+
Sbjct: 134 IEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVI 188
>sp|P54415|CLPP1_SYNE7 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
elongatus (strain PCC 7942) GN=clpP1 PE=3 SV=1
Length = 197
Score = 238 bits (608), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/175 (66%), Positives = 139/175 (79%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G PV D+AN IVAQLL+L+A DP KDI +Y+NSPGGSV G+
Sbjct: 14 RAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGL 73
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
IFDT+ HIRPDVSTVCVGLAASMGAFLL+AG KGKR SL +SRIMIHQPLGGAQG D
Sbjct: 74 GIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKD 133
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
I++QANE+L+ K NLN L+ TGQ L +I +DTDRDFFMSA EA +YGLID V+
Sbjct: 134 IEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVI 188
>sp|Q5N1P6|CLPP3_SYNP6 ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=clpP3 PE=3 SV=1
Length = 240
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 112/175 (64%), Positives = 141/175 (80%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RI+ G V+D +A+ IVAQLL+L+A DP KDI +Y+NSPGGSVTAGMAI+
Sbjct: 53 DIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIY 112
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT++ + PDV+T+C GLAASMGAFLLS G +GKR +LP++RIMIHQPLGGAQG DI++
Sbjct: 113 DTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEI 172
Query: 234 QANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNP 288
QA E+L+HK+ LN L+ HTGQ LEKI DTDRDFFMS EEAK YGLID V+ P
Sbjct: 173 QAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVLTRP 227
>sp|O34125|CLPP2_SYNE7 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1
Length = 240
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 112/175 (64%), Positives = 141/175 (80%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RI+ G V+D +A+ IVAQLL+L+A DP KDI +Y+NSPGGSVTAGMAI+
Sbjct: 53 DIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIY 112
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT++ + PDV+T+C GLAASMGAFLLS G +GKR +LP++RIMIHQPLGGAQG DI++
Sbjct: 113 DTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEI 172
Query: 234 QANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNP 288
QA E+L+HK+ LN L+ HTGQ LEKI DTDRDFFMS EEAK YGLID V+ P
Sbjct: 173 QAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVLTRP 227
>sp|O30612|CLPP2_MYXXD ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1
Length = 203
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 113/189 (59%), Positives = 150/189 (79%), Gaps = 1/189 (0%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G PV DD+ANIIVAQLL+L++ DP+K I +Y+NSPGGSVTAG+
Sbjct: 15 RAYDLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPGGSVTAGL 74
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++++ VST+CVG AASMGA LL AG KGKRY+LPNSRIMIHQPLGGAQG +D
Sbjct: 75 AIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQGQATD 134
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 290
ID+QA E+L ++ +NG + HTG T+E+I +DT+RD+FMSAE+A+ YGLID VV +
Sbjct: 135 IDIQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFMSAEDARQYGLIDEVV-EKQR 193
Query: 291 ILQPVAAAA 299
++ P A A
Sbjct: 194 VIAPTPAPA 202
>sp|Q88KJ0|CLPP_PSEPK ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
putida (strain KT2440) GN=clpP PE=3 SV=1
Length = 213
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 150/200 (75%), Gaps = 6/200 (3%)
Query: 91 YIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLL 144
YI + + GG PM++ R ++ S+L + R+I GPVED MAN++VAQLL
Sbjct: 6 YIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLL 65
Query: 145 YLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+AG K
Sbjct: 66 FLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAK 125
Query: 205 GKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDT 264
GKR+ LPNSR+MIHQPLGG QG +DI++ A E+L+ KA LN L+YHTGQ LE I DT
Sbjct: 126 GKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDT 185
Query: 265 DRDFFMSAEEAKDYGLIDGV 284
+RD FMSA A +YGLID V
Sbjct: 186 ERDNFMSASRAAEYGLIDSV 205
>sp|A5W635|CLPP_PSEP1 ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
putida (strain F1 / ATCC 700007) GN=clpP PE=3 SV=1
Length = 213
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 150/200 (75%), Gaps = 6/200 (3%)
Query: 91 YIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLL 144
YI + + GG PM++ R ++ S+L + R+I GPVED MAN++VAQLL
Sbjct: 6 YIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLL 65
Query: 145 YLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+AG K
Sbjct: 66 FLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAK 125
Query: 205 GKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDT 264
GKR+ LPNSR+MIHQPLGG QG +DI++ A E+L+ KA LN L+YHTGQ LE I DT
Sbjct: 126 GKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDT 185
Query: 265 DRDFFMSAEEAKDYGLIDGV 284
+RD FMSA A +YGLID V
Sbjct: 186 ERDNFMSASRAAEYGLIDSV 205
>sp|Q7M7M3|CLPP_WOLSU ATP-dependent Clp protease proteolytic subunit OS=Wolinella
succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 /
NCTC 11488 / FDC 602W) GN=clpP PE=3 SV=1
Length = 195
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 152/200 (76%), Gaps = 7/200 (3%)
Query: 91 YIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVD 150
YIP Y + G G R ++ S+L + RII G + D +A+ IV+Q+L+L+A D
Sbjct: 3 YIP-YVIEKTGRGE------RSYDIYSRLLKDRIIMLSGEINDGVASSIVSQMLFLEAED 55
Query: 151 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL 210
P KDI +Y+NSPGG +T+GM+I+DT+ +++PD+ T+C+G AASMGAFLLS GTKGKR+SL
Sbjct: 56 PEKDIYLYINSPGGVITSGMSIYDTMNYVKPDICTICIGQAASMGAFLLSCGTKGKRFSL 115
Query: 211 PNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270
PNSRIMIHQPLGGAQG +DI++QA E+L K+ LNG L+ +TGQ LEKI +DTDRDFFM
Sbjct: 116 PNSRIMIHQPLGGAQGQATDIEIQAKEILRLKSILNGILASNTGQPLEKIAKDTDRDFFM 175
Query: 271 SAEEAKDYGLIDGVVMNPHK 290
SA+E+K+YGLID V+ K
Sbjct: 176 SAQESKEYGLIDNVLEKSFK 195
>sp|B1J692|CLPP_PSEPW ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
putida (strain W619) GN=clpP PE=3 SV=1
Length = 213
Score = 235 bits (599), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 150/200 (75%), Gaps = 6/200 (3%)
Query: 91 YIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLL 144
YI + + GG PM++ R ++ S+L + R+I GPVED MAN++VAQ+L
Sbjct: 6 YIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQML 65
Query: 145 YLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+AG K
Sbjct: 66 FLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAK 125
Query: 205 GKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDT 264
GKR+ LPNSR+MIHQPLGG QG +DI++ A E+L+ KA LN L+YHTGQ LE I DT
Sbjct: 126 GKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDT 185
Query: 265 DRDFFMSAEEAKDYGLIDGV 284
+RD FMSA A +YGLID V
Sbjct: 186 ERDNFMSASRAAEYGLIDSV 205
>sp|B1L812|CLPP_THESQ ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp.
(strain RQ2) GN=clpP PE=3 SV=1
Length = 203
Score = 234 bits (598), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 146/179 (81%), Gaps = 3/179 (1%)
Query: 110 GRFQ---NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSV 166
GR++ ++ S+L + RI+ G P++D +AN+++AQLL+L+A DP+KD+ +Y+NSPGGSV
Sbjct: 21 GRYERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSV 80
Query: 167 TAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQG 226
TAG+AI+DT+++I+ DVST+CVG AASM A LL+AG KGKRY+LPN+RIMIHQPLGGA+G
Sbjct: 81 TAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG 140
Query: 227 GQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
D+++ E+L K LN LS HTGQ +EKI +DTDRDFFMSAEEAK+YG++D VV
Sbjct: 141 PAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199
>sp|A5IJ91|CLPP_THEP1 ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=clpP PE=3 SV=1
Length = 203
Score = 234 bits (598), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 146/179 (81%), Gaps = 3/179 (1%)
Query: 110 GRFQ---NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSV 166
GR++ ++ S+L + RI+ G P++D +AN+++AQLL+L+A DP+KD+ +Y+NSPGGSV
Sbjct: 21 GRYERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSV 80
Query: 167 TAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQG 226
TAG+AI+DT+++I+ DVST+CVG AASM A LL+AG KGKRY+LPN+RIMIHQPLGGA+G
Sbjct: 81 TAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG 140
Query: 227 GQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
D+++ E+L K LN LS HTGQ +EKI +DTDRDFFMSAEEAK+YG++D VV
Sbjct: 141 PAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199
>sp|Q9WZF9|CLPP_THEMA ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=clpP PE=3 SV=1
Length = 203
Score = 234 bits (598), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 146/179 (81%), Gaps = 3/179 (1%)
Query: 110 GRFQ---NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSV 166
GR++ ++ S+L + RI+ G P++D +AN+++AQLL+L+A DP+KD+ +Y+NSPGGSV
Sbjct: 21 GRYERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSV 80
Query: 167 TAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQG 226
TAG+AI+DT+++I+ DVST+CVG AASM A LL+AG KGKRY+LPN+RIMIHQPLGGA+G
Sbjct: 81 TAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG 140
Query: 227 GQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
D+++ E+L K LN LS HTGQ +EKI +DTDRDFFMSAEEAK+YG++D VV
Sbjct: 141 PAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199
>sp|Q4ZVM7|CLPP_PSEU2 ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=clpP PE=3 SV=1
Length = 213
Score = 234 bits (597), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 150/201 (74%), Gaps = 6/201 (2%)
Query: 91 YIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLL 144
YI + + GG PM++ R ++ S+L + R+I GPVED MAN+I AQLL
Sbjct: 6 YIQQNSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLL 65
Query: 145 YLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+ G +
Sbjct: 66 FLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAE 125
Query: 205 GKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDT 264
GKR+ LPNSR+MIHQPLGG QG SDID+ A E+LH + LN L++HTGQ+LE I DT
Sbjct: 126 GKRHCLPNSRMMIHQPLGGFQGQASDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDT 185
Query: 265 DRDFFMSAEEAKDYGLIDGVV 285
+RD FMSAE A +YGLID V+
Sbjct: 186 ERDNFMSAERAAEYGLIDSVI 206
>sp|Q87YR6|CLPP_PSESM ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=clpP PE=3 SV=2
Length = 213
Score = 234 bits (597), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 150/201 (74%), Gaps = 6/201 (2%)
Query: 91 YIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLL 144
YI + + GG PM++ R ++ S+L + R+I GPVED MAN+I AQLL
Sbjct: 6 YIQQNSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLL 65
Query: 145 YLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+ G +
Sbjct: 66 FLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAE 125
Query: 205 GKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDT 264
GKR+ LPNSR+MIHQPLGG QG SDID+ A E+LH + LN L++HTGQ+LE I DT
Sbjct: 126 GKRHCLPNSRMMIHQPLGGFQGQASDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDT 185
Query: 265 DRDFFMSAEEAKDYGLIDGVV 285
+RD FMSAE A +YGLID V+
Sbjct: 186 ERDNFMSAERAAEYGLIDSVI 206
>sp|Q48KZ0|CLPP_PSE14 ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=clpP PE=3 SV=1
Length = 213
Score = 234 bits (597), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 150/201 (74%), Gaps = 6/201 (2%)
Query: 91 YIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLL 144
YI + + GG PM++ R ++ S+L + R+I GPVED MAN+I AQLL
Sbjct: 6 YIQQNSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLL 65
Query: 145 YLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+ G +
Sbjct: 66 FLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAE 125
Query: 205 GKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDT 264
GKR+ LPNSR+MIHQPLGG QG SDID+ A E+LH + LN L++HTGQ+LE I DT
Sbjct: 126 GKRHCLPNSRMMIHQPLGGFQGQASDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDT 185
Query: 265 DRDFFMSAEEAKDYGLIDGVV 285
+RD FMSAE A +YGLID V+
Sbjct: 186 ERDNFMSAERAAEYGLIDSVI 206
>sp|Q8DJZ9|CLPP2_THEEB ATP-dependent Clp protease proteolytic subunit 2
OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP2
PE=3 SV=1
Length = 198
Score = 234 bits (596), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 109/172 (63%), Positives = 142/172 (82%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ ++L++ RII G V+D++AN IVA +LYLD+ DP KDI++Y+NSPGGSVTAGMAI+
Sbjct: 22 DIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIMLYINSPGGSVTAGMAIY 81
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT++HI+ DV T+CVGLAASMG+FLL+AGTKGKR +LP+SRIMIHQP GG +G +DI++
Sbjct: 82 DTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEI 141
Query: 234 QANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
+A E+L + LN +YHTGQ LEKI D DRDFFMSAEEAK+YGLID V+
Sbjct: 142 EAREILRVRRQLNELYAYHTGQPLEKIERDMDRDFFMSAEEAKNYGLIDRVI 193
>sp|B0KJG6|CLPP_PSEPG ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
putida (strain GB-1) GN=clpP PE=3 SV=1
Length = 213
Score = 234 bits (596), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 148/200 (74%), Gaps = 6/200 (3%)
Query: 91 YIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLL 144
YI + + GG PM++ R ++ S+L + R+I GPVED MAN++VAQ+L
Sbjct: 6 YIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQML 65
Query: 145 YLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+AG K
Sbjct: 66 FLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLTAGAK 125
Query: 205 GKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDT 264
GKR+ LPNSR+MIHQPLGG QG +DI + A E+L KA LN L+YHTGQ LE I DT
Sbjct: 126 GKRHCLPNSRVMIHQPLGGFQGQATDIQIHAQEILSIKARLNELLAYHTGQDLETIQRDT 185
Query: 265 DRDFFMSAEEAKDYGLIDGV 284
+RD FMSA A +YGLID V
Sbjct: 186 ERDNFMSASRAAEYGLIDSV 205
>sp|A2SFB5|CLPP_METPP ATP-dependent Clp protease proteolytic subunit OS=Methylibium
petroleiphilum (strain PM1) GN=clpP PE=3 SV=1
Length = 202
Score = 234 bits (596), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 106/175 (60%), Positives = 144/175 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GPV D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AG+
Sbjct: 24 RAYDIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGL 83
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
+IFDT++ I+PDVST+C+G+AASMGAFLL+AG KGKR++LPNSR+MIHQP GGAQG +D
Sbjct: 84 SIFDTMQFIKPDVSTLCMGIAASMGAFLLAAGAKGKRFALPNSRVMIHQPSGGAQGQATD 143
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
I++QA E+L + +LNG L+ TGQ LEKI D++RD+FMSAEEA YGLID V+
Sbjct: 144 IEIQAREILKLRESLNGILAERTGQPLEKIRADSERDYFMSAEEATGYGLIDKVI 198
>sp|Q3SI98|CLPP_THIDA ATP-dependent Clp protease proteolytic subunit OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=clpP PE=3 SV=1
Length = 212
Score = 233 bits (595), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 113/192 (58%), Positives = 150/192 (78%), Gaps = 6/192 (3%)
Query: 100 QGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNK 153
QG G PM++ R ++ S+L + R+I GPV D AN+IVAQ+L+L++ +P+K
Sbjct: 13 QGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDATANLIVAQMLFLESENPDK 72
Query: 154 DIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNS 213
DI +Y+NSPGGSV+AG+AI+DT++ I+PDVST+C+G AASMGAFLL+AG KGKRY LPNS
Sbjct: 73 DIYLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCIGQAASMGAFLLTAGAKGKRYCLPNS 132
Query: 214 RIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAE 273
R+MIHQPLGG QG SDI++ A E+L+ KA LNG L+ HTGQ+LE I+ DTDRD FMSAE
Sbjct: 133 RVMIHQPLGGFQGQASDIEIHAKEILYLKARLNGMLAKHTGQSLEVIDRDTDRDNFMSAE 192
Query: 274 EAKDYGLIDGVV 285
++ YGL+D V+
Sbjct: 193 DSVKYGLVDKVL 204
>sp|A6Q1C1|CLPP_NITSB ATP-dependent Clp protease proteolytic subunit OS=Nitratiruptor sp.
(strain SB155-2) GN=clpP PE=3 SV=1
Length = 196
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/197 (57%), Positives = 153/197 (77%), Gaps = 7/197 (3%)
Query: 89 SPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDA 148
S YIP Y G G R ++ S+L + RII G + D +A+ IVAQLL+L+A
Sbjct: 2 SYYIP-YVIERTGRGE------RSYDIYSRLLKDRIIMLSGEINDAVASSIVAQLLFLEA 54
Query: 149 VDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRY 208
DP+KDI +Y+NSPGG +T+GM+I+DT+ +I+PDVST+C+G AASMGAFLLS+GTKGKRY
Sbjct: 55 EDPDKDIYLYINSPGGVITSGMSIYDTMNYIKPDVSTICIGQAASMGAFLLSSGTKGKRY 114
Query: 209 SLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268
+LP++RIMIHQPLGGAQG +DI++QA E+L K LN L+ +TGQ+++KI +DT+RDF
Sbjct: 115 ALPHARIMIHQPLGGAQGQATDIEIQAKEILRLKKILNEILAENTGQSVKKIAKDTERDF 174
Query: 269 FMSAEEAKDYGLIDGVV 285
FMS+EEAK+YGLID V+
Sbjct: 175 FMSSEEAKEYGLIDQVL 191
>sp|Q3AF96|CLPP_CARHZ ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3
SV=1
Length = 195
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/175 (60%), Positives = 141/175 (80%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R I GGP++D +AN+++AQ+L+L+A DP KDI +Y+NSPGG +TAGM
Sbjct: 17 RSYDIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGM 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+C+G AASMGAFLL+AG KGKR+SLP +RIMIHQPLGG QG +D
Sbjct: 77 AIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATD 136
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
ID+ A E+L + LN L+ HTGQ EKI DT+RDFFMSA EAK+YG+ID V+
Sbjct: 137 IDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVI 191
>sp|A6SY74|CLPP_JANMA ATP-dependent Clp protease proteolytic subunit OS=Janthinobacterium
sp. (strain Marseille) GN=clpP PE=3 SV=1
Length = 210
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/175 (62%), Positives = 144/175 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII GPV D MAN+IVAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 32 RAYDIYSRLLKERIIFLVGPVNDQMANLIVAQLLFLESENPDKDISLYINSPGGSVSAGM 91
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ I+P+VST+C GLAASMGAFLL+AG KGKR+SLPNSRIMIHQPLGGAQG SD
Sbjct: 92 AIYDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMIHQPLGGAQGQASD 151
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
I++QA E+L+ + LN L+ TG+++E+I +DTDRD FMSA+ A YG+ID V+
Sbjct: 152 IEIQAREILYLRERLNAILAERTGKSVEEIAKDTDRDNFMSADAAVTYGMIDKVL 206
>sp|A7HFV9|CLPP_ANADF ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter
sp. (strain Fw109-5) GN=clpP PE=3 SV=1
Length = 204
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 103/180 (57%), Positives = 147/180 (81%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RI+ G P++DD+AN+++AQLL+L++ DP+KDI +Y+NSPGGSVT+G+
Sbjct: 18 RSYDIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPGGSVTSGL 77
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++++P VST+C+G AASMGAFLL+ G GKR+++PN+RIMIHQP+GG QG +D
Sbjct: 78 AIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQPMGGFQGQATD 137
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 290
ID+QA E+L KA LN L+ HT Q LE+I +DTDRD+FM A EAK+YGLID V+++ K
Sbjct: 138 IDIQAREILRLKAKLNDILAKHTKQPLERIEKDTDRDYFMGAGEAKEYGLIDEVIVHKPK 197
>sp|Q49VZ2|CLPP_STAS1 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=clpP PE=3 SV=1
Length = 194
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 105/176 (59%), Positives = 143/176 (81%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G ++D++AN IV+QLL+L A D KDI +Y+NSPGGSVTAG
Sbjct: 16 RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGF 75
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DTI+HI+PDV T+C+G+AASMG+FLL+AG KGKR++LPN+ +MIHQPLGGAQG ++
Sbjct: 76 AIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATE 135
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVM 286
I++ AN +L +A LN L+ TGQ++EKI +DTDRD F+SAEEAKDYGL+D V++
Sbjct: 136 IEIAANHILKTRAKLNQILAERTGQSIEKIEQDTDRDNFLSAEEAKDYGLVDQVMV 191
>sp|Q7NEW2|CLPP1_GLOVI ATP-dependent Clp protease proteolytic subunit 1 OS=Gloeobacter
violaceus (strain PCC 7421) GN=clpP1 PE=3 SV=1
Length = 197
Score = 231 bits (590), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/174 (63%), Positives = 141/174 (81%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ ++L RII G V+D++AN I+A +LYLD+ DP KDI +Y+NSPGGSV+AG+AI+
Sbjct: 21 DIFNRLALDRIIFLGREVDDEIANAIIASMLYLDSEDPEKDIFLYINSPGGSVSAGLAIY 80
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT++H+R DV+T+CVGLAASMG+FLL+AG KGKR SLP+SRIMIHQPLGGAQG +DI +
Sbjct: 81 DTMQHVRADVATMCVGLAASMGSFLLTAGAKGKRTSLPHSRIMIHQPLGGAQGQATDIGI 140
Query: 234 QANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 287
QA E+L+ K LN LS TGQ LE+I DTDRDFFMSAE+AK YGLID VV +
Sbjct: 141 QAKEILYTKDRLNQILSERTGQPLERIERDTDRDFFMSAEDAKQYGLIDQVVQH 194
>sp|Q3IF46|CLPP_PSEHT ATP-dependent Clp protease proteolytic subunit OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=clpP PE=3 SV=1
Length = 205
Score = 231 bits (590), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 108/177 (61%), Positives = 142/177 (80%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII GPVED+MAN+I+AQ+L+L++ +P+KDI +Y+NSPGGSVTAGM
Sbjct: 25 RSYDIYSRLLKERIIFLTGPVEDNMANLILAQMLFLESENPDKDIFLYINSPGGSVTAGM 84
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+ I+PDVST+CVG AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG SD
Sbjct: 85 AIYDTMNFIKPDVSTICVGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASD 144
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 287
++ A E+L K LN ++ HTGQ L+ I++DTDRD FMSA++A DYG++D V N
Sbjct: 145 FEIHAKEILSIKDKLNRLMAEHTGQPLDVISKDTDRDNFMSADQAVDYGIVDSVFKN 201
>sp|B5EI27|CLPP_GEOBB ATP-dependent Clp protease proteolytic subunit OS=Geobacter
bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
GN=clpP PE=3 SV=1
Length = 199
Score = 231 bits (589), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 108/175 (61%), Positives = 141/175 (80%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII GG ++D++AN+++AQLL+L+A DP+KDI +Y+NSPGG VTAGM
Sbjct: 15 RSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGM 74
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+R+I+ VST+CVG AASMGAFLLS G KGKRYSL NSRIMIHQPLGG QG +D
Sbjct: 75 AIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGFQGQATD 134
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
I + A E+L K LN L+ HTGQ++EK+ DT+RD+FMS EEAK+YG+ID +V
Sbjct: 135 IHIHAKEILRMKDQLNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIIDAIV 189
>sp|Q0BEF6|CLPP_BURCM ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
ambifaria (strain ATCC BAA-244 / AMMD) GN=clpP PE=3 SV=1
Length = 217
Score = 231 bits (589), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 145/177 (81%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R++ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 39 RSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 98
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ I+PDVST+C+GLAASMGAFLL++G KGKR++LPNSR+MIHQPLGGA+G SD
Sbjct: 99 AIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASD 158
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 287
I++QA E+L+ K LN L+ HTGQ +E+I DTDRD FMS+E+AK YGLID V++
Sbjct: 159 IEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVLLK 215
>sp|A0K847|CLPP_BURCH ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
cenocepacia (strain HI2424) GN=clpP PE=3 SV=1
Length = 217
Score = 231 bits (589), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 145/177 (81%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R++ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 39 RSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 98
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ I+PDVST+C+GLAASMGAFLL++G KGKR++LPNSR+MIHQPLGGA+G SD
Sbjct: 99 AIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASD 158
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 287
I++QA E+L+ K LN L+ HTGQ +E+I DTDRD FMS+E+AK YGLID V++
Sbjct: 159 IEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVLLK 215
>sp|Q1BH85|CLPP_BURCA ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
cenocepacia (strain AU 1054) GN=clpP PE=3 SV=1
Length = 217
Score = 231 bits (589), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 145/177 (81%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R++ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 39 RSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 98
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ I+PDVST+C+GLAASMGAFLL++G KGKR++LPNSR+MIHQPLGGA+G SD
Sbjct: 99 AIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASD 158
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 287
I++QA E+L+ K LN L+ HTGQ +E+I DTDRD FMS+E+AK YGLID V++
Sbjct: 159 IEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVLLK 215
>sp|Q39FE8|CLPP_BURS3 ATP-dependent Clp protease proteolytic subunit OS=Burkholderia sp.
(strain 383) GN=clpP PE=3 SV=1
Length = 217
Score = 231 bits (589), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 145/177 (81%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R++ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 39 RSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 98
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ I+PDVST+C+GLAASMGAFLL++G KGKR++LPNSR+MIHQPLGGA+G SD
Sbjct: 99 AIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASD 158
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 287
I++QA E+L+ K LN L+ HTGQ +E+I DTDRD FMS+E+AK YGLID V++
Sbjct: 159 IEIQAREILYLKERLNQLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVLLK 215
>sp|B1Y6H3|CLPP_LEPCP ATP-dependent Clp protease proteolytic subunit OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=clpP
PE=3 SV=1
Length = 202
Score = 231 bits (589), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 106/175 (60%), Positives = 142/175 (81%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GPV D AN++VAQLL+L++ +P+KDI Y+NSPGGSV+AGM
Sbjct: 24 RAYDIYSRLLRERVIFLVGPVNDQSANLVVAQLLFLESENPDKDISFYINSPGGSVSAGM 83
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
+I+DT++ I+P VST+C+GLAASMGAFLL+AG KGKR+SLPNS+IMIHQPLGGAQG +D
Sbjct: 84 SIYDTMQFIKPQVSTLCMGLAASMGAFLLAAGAKGKRFSLPNSKIMIHQPLGGAQGQATD 143
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
I++ A E+L + LN L+ TGQ+LEKI DT+RD+FMS+EEA+ YGLID V+
Sbjct: 144 IEIHAREILKTREQLNRILAERTGQSLEKIQNDTERDYFMSSEEAQTYGLIDQVI 198
>sp|C6E2T0|CLPP_GEOSM ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp.
(strain M21) GN=clpP PE=3 SV=1
Length = 199
Score = 231 bits (588), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 108/175 (61%), Positives = 141/175 (80%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII GG ++D++AN+++AQLL+L+A DP+KDI +Y+NSPGG VTAGM
Sbjct: 15 RSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGM 74
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+R+I+ VST+CVG AASMGAFLLS G KGKRYSL NSRIMIHQPLGG QG +D
Sbjct: 75 AIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGFQGQATD 134
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
I + A E+L K LN L+ HTGQ++EK+ DT+RD+FMS EEAK+YG+ID +V
Sbjct: 135 IHIHAKEILRMKDELNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIIDAIV 189
>sp|Q9X5N0|CLPP2_MYXXA ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus GN=clpP2 PE=3 SV=1
Length = 206
Score = 230 bits (587), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 105/182 (57%), Positives = 147/182 (80%), Gaps = 1/182 (0%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R +++S+L + RI+ G ++DD+AN+IVAQLL+L++ DP+KDI +Y+NSPGGSVTAG+
Sbjct: 18 RSYDIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPGGSVTAGL 77
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++++ VST+CVG AASMGA LL AG KGKRY+LP+SRIMIHQPLGG +G +D
Sbjct: 78 AIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQATD 137
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 290
I++QA E+L KA LN + HTGQ++E++ +DTDRD+FM A EAK YG+ID + NP K
Sbjct: 138 IEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDE-IQNPRK 196
Query: 291 IL 292
++
Sbjct: 197 VV 198
>sp|Q9CJM2|CLPP_PASMU ATP-dependent Clp protease proteolytic subunit OS=Pasteurella
multocida (strain Pm70) GN=clpP PE=3 SV=1
Length = 193
Score = 230 bits (587), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 107/175 (61%), Positives = 139/175 (79%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GG VED MAN+IVAQLL+L++ DP KDI +Y+NSPGGSVTAGM
Sbjct: 16 RSYDIYSRLLKERVIFLGGEVEDRMANLIVAQLLFLESEDPEKDINIYINSPGGSVTAGM 75
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ ++PD+ T+CVG A SMGAFLL+ GT GKR +LP++R+MIHQPLGG +G SD
Sbjct: 76 AIYDTMQFVKPDIRTLCVGQACSMGAFLLAGGTAGKRIALPSARVMIHQPLGGFRGQASD 135
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
I + A E+L K LN L++HTGQT+E+I DTDRD FMSAEEAK YGL+D V+
Sbjct: 136 IQIHAQEILKIKQTLNERLAFHTGQTIERIERDTDRDNFMSAEEAKAYGLVDEVL 190
>sp|Q31GF1|CLPP_THICR ATP-dependent Clp protease proteolytic subunit OS=Thiomicrospira
crunogena (strain XCL-2) GN=clpP PE=3 SV=1
Length = 200
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 109/172 (63%), Positives = 140/172 (81%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + R+I G VED MAN+IVAQLL+L++ +P+KDI +Y+NSPGGSVTAGMAI+
Sbjct: 26 DIYSRLLKERVIFLVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMAIY 85
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT+R I+PDVST+C+G AASMG+FLLSAG +GKRY+LPNSR+MIHQPLGG QG SDI++
Sbjct: 86 DTMRFIKPDVSTMCIGQAASMGSFLLSAGAEGKRYALPNSRVMIHQPLGGFQGQASDIEI 145
Query: 234 QANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 285
A E++ K LN L+ HTGQ +E I DTDRD FMSA+EA DYGL+D V+
Sbjct: 146 HAKEIIQIKQKLNKALADHTGQPIEVIENDTDRDNFMSADEACDYGLVDKVL 197
>sp|Q5QXN8|CLPP_IDILO ATP-dependent Clp protease proteolytic subunit OS=Idiomarina
loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
GN=clpP PE=3 SV=1
Length = 206
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 111/204 (54%), Positives = 149/204 (73%), Gaps = 7/204 (3%)
Query: 82 NDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVA 141
+D++ P + +P + G R ++ S+L + R+I C G VED MAN+IVA
Sbjct: 3 SDIQDPMAQLVPMVVEQTSKGE-------RSYDIYSRLLKERVIFCCGQVEDHMANLIVA 55
Query: 142 QLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSA 201
QLL+L++ +P+KDI +Y+NSPGG VTAGMAI+DT+R I+PDVSTVC+G AASMGAFLL+
Sbjct: 56 QLLFLESDNPDKDIYLYINSPGGVVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLAG 115
Query: 202 GTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKIN 261
G +GKRY LPNSR+MIHQPLGG QG SD ++ A ++L K LN L+ +TGQ EK+
Sbjct: 116 GAQGKRYCLPNSRVMIHQPLGGFQGQASDFEIHAKQILDLKERLNRMLAENTGQDYEKVA 175
Query: 262 EDTDRDFFMSAEEAKDYGLIDGVV 285
DTDRD F+SAEE+ DYGL+DG++
Sbjct: 176 RDTDRDHFLSAEESIDYGLVDGIL 199
>sp|Q2SWQ6|CLPP_BURTA ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=clpP PE=3 SV=1
Length = 207
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 106/174 (60%), Positives = 144/174 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RI+ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 29 RSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 88
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ ++PDVST+C+GLAASMGAFLL++G KGKRY+LPN+R+MIHQPLGGA+G SD
Sbjct: 89 AIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASD 148
Query: 231 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGV 284
I++QA E+L+ K LN L++HTGQ +E+I DTDRD FMS+E+AK YGLID V
Sbjct: 149 IEIQAREILYLKDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,524,513
Number of Sequences: 539616
Number of extensions: 5043306
Number of successful extensions: 12331
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11329
Number of HSP's gapped (non-prelim): 796
length of query: 301
length of database: 191,569,459
effective HSP length: 117
effective length of query: 184
effective length of database: 128,434,387
effective search space: 23631927208
effective search space used: 23631927208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)