Query 022161
Match_columns 301
No_of_seqs 272 out of 1549
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 4.5E-64 9.8E-69 458.3 20.3 256 26-300 15-270 (275)
2 COG0740 ClpP Protease subunit 100.0 5.1E-57 1.1E-61 403.0 20.3 180 110-289 15-194 (200)
3 PRK14514 ATP-dependent Clp pro 100.0 6.5E-54 1.4E-58 389.9 21.5 179 110-288 42-220 (221)
4 PRK12552 ATP-dependent Clp pro 100.0 2.8E-53 6.1E-58 385.5 20.9 176 114-289 22-216 (222)
5 PRK14513 ATP-dependent Clp pro 100.0 6.8E-53 1.5E-57 378.6 21.7 179 110-288 15-193 (201)
6 CHL00028 clpP ATP-dependent Cl 100.0 1.8E-52 3.8E-57 375.8 20.9 179 110-288 18-197 (200)
7 PRK12551 ATP-dependent Clp pro 100.0 7E-52 1.5E-56 370.8 21.4 178 111-288 14-191 (196)
8 TIGR00493 clpP ATP-dependent C 100.0 6.1E-48 1.3E-52 343.9 20.6 177 110-286 14-190 (191)
9 PRK14512 ATP-dependent Clp pro 100.0 1.1E-47 2.4E-52 343.9 19.8 180 114-293 15-194 (197)
10 PRK00277 clpP ATP-dependent Cl 100.0 5.3E-47 1.1E-51 339.9 22.1 182 110-291 19-200 (200)
11 PRK12553 ATP-dependent Clp pro 100.0 1.5E-45 3.3E-50 332.2 20.5 179 112-290 25-205 (207)
12 PF00574 CLP_protease: Clp pro 100.0 3E-46 6.4E-51 327.8 15.1 178 110-287 4-181 (182)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 1.9E-44 4.1E-49 315.3 17.0 171 114-284 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 1.9E-43 4.2E-48 307.0 18.8 162 123-284 1-162 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 1.8E-33 3.8E-38 242.2 17.2 156 124-284 2-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 2.2E-33 4.7E-38 246.9 17.4 161 124-293 3-171 (172)
17 cd00394 Clp_protease_like Case 100.0 3.9E-31 8.5E-36 226.8 17.2 159 124-284 1-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 100.0 2E-28 4.3E-33 216.9 17.7 168 124-295 3-173 (187)
19 cd07021 Clp_protease_NfeD_like 99.9 5.9E-27 1.3E-31 207.0 16.8 162 124-293 3-177 (178)
20 COG0616 SppA Periplasmic serin 99.9 2.7E-22 5.8E-27 191.6 14.4 171 123-297 62-271 (317)
21 TIGR00706 SppA_dom signal pept 99.9 1.4E-21 3E-26 175.7 16.5 169 124-297 4-204 (207)
22 cd07023 S49_Sppa_N_C Signal pe 99.9 3E-21 6.5E-26 173.1 16.0 168 123-294 3-206 (208)
23 TIGR00705 SppA_67K signal pept 99.9 5.1E-21 1.1E-25 195.9 16.7 169 124-296 312-519 (584)
24 cd07014 S49_SppA Signal peptid 99.9 7.4E-21 1.6E-25 166.5 15.4 151 135-295 23-176 (177)
25 cd07022 S49_Sppa_36K_type Sign 99.8 3.1E-20 6.8E-25 167.6 15.4 167 124-295 4-213 (214)
26 PRK10949 protease 4; Provision 99.8 4.5E-20 9.7E-25 189.8 16.4 171 123-297 329-538 (618)
27 cd07019 S49_SppA_1 Signal pept 99.8 1.7E-19 3.7E-24 162.6 14.8 168 124-295 4-210 (211)
28 PRK11778 putative inner membra 99.8 1.4E-18 3E-23 166.8 15.1 169 123-297 93-295 (330)
29 cd07018 S49_SppA_67K_type Sign 99.8 1.9E-18 4.2E-23 156.9 14.0 163 128-295 23-220 (222)
30 COG1030 NfeD Membrane-bound se 99.8 7E-18 1.5E-22 165.6 13.8 168 123-298 29-199 (436)
31 PF01972 SDH_sah: Serine dehyd 99.6 2.4E-14 5.1E-19 133.8 15.6 147 128-281 69-242 (285)
32 TIGR00705 SppA_67K signal pept 99.4 1E-12 2.3E-17 134.9 14.3 160 133-296 75-277 (584)
33 PF01343 Peptidase_S49: Peptid 99.4 5.4E-13 1.2E-17 114.8 8.8 120 176-299 2-151 (154)
34 PRK10949 protease 4; Provision 99.3 1.3E-11 2.8E-16 127.6 13.8 160 133-296 94-296 (618)
35 cd06558 crotonase-like Crotona 99.0 9.5E-09 2.1E-13 89.9 13.7 139 130-287 22-181 (195)
36 PRK05869 enoyl-CoA hydratase; 98.7 3E-07 6.4E-12 83.7 14.9 150 125-294 21-193 (222)
37 PRK06688 enoyl-CoA hydratase; 98.7 2.2E-07 4.8E-12 85.7 14.1 137 131-286 29-183 (259)
38 PRK08258 enoyl-CoA hydratase; 98.7 3.3E-07 7.2E-12 85.8 14.9 139 131-287 41-202 (277)
39 PRK06495 enoyl-CoA hydratase; 98.7 2.7E-07 5.8E-12 85.5 13.7 141 124-286 16-181 (257)
40 PRK03580 carnitinyl-CoA dehydr 98.7 3.7E-07 8E-12 84.7 14.1 149 125-293 16-187 (261)
41 COG3904 Predicted periplasmic 98.7 5.7E-07 1.2E-11 81.5 14.2 158 119-283 71-236 (245)
42 PRK11423 methylmalonyl-CoA dec 98.7 3.4E-07 7.4E-12 85.1 13.2 136 131-286 28-183 (261)
43 PRK07509 enoyl-CoA hydratase; 98.7 4.7E-07 1E-11 83.8 13.6 146 124-288 15-191 (262)
44 PRK07110 polyketide biosynthes 98.7 2.8E-07 6E-12 85.1 12.0 151 125-295 18-189 (249)
45 PRK06190 enoyl-CoA hydratase; 98.6 1E-06 2.2E-11 82.1 15.2 137 131-286 28-181 (258)
46 PRK06142 enoyl-CoA hydratase; 98.6 6E-07 1.3E-11 83.7 13.6 149 125-292 19-202 (272)
47 PRK05981 enoyl-CoA hydratase; 98.6 8.4E-07 1.8E-11 82.4 14.3 138 131-287 28-191 (266)
48 PRK07658 enoyl-CoA hydratase; 98.6 8.4E-07 1.8E-11 81.9 14.1 144 131-294 25-188 (257)
49 PRK07511 enoyl-CoA hydratase; 98.6 1.1E-06 2.4E-11 81.4 14.6 145 124-287 15-186 (260)
50 PRK06210 enoyl-CoA hydratase; 98.6 7.4E-07 1.6E-11 83.0 13.6 144 125-287 19-196 (272)
51 PLN02664 enoyl-CoA hydratase/d 98.6 8.7E-07 1.9E-11 82.9 13.9 144 125-287 21-199 (275)
52 PRK06143 enoyl-CoA hydratase; 98.6 9.8E-07 2.1E-11 81.8 14.0 143 124-286 19-186 (256)
53 PRK09076 enoyl-CoA hydratase; 98.6 1.2E-06 2.5E-11 81.3 14.3 138 131-287 26-183 (258)
54 PRK09674 enoyl-CoA hydratase-i 98.6 1.4E-06 3.1E-11 80.6 14.8 138 131-287 26-180 (255)
55 TIGR03210 badI 2-ketocyclohexa 98.6 1.1E-06 2.4E-11 81.5 13.9 137 131-286 26-181 (256)
56 PRK05809 3-hydroxybutyryl-CoA 98.6 9E-07 1.9E-11 81.9 12.9 141 131-293 28-190 (260)
57 TIGR01929 menB naphthoate synt 98.6 9.4E-07 2E-11 82.0 12.9 137 131-286 27-184 (259)
58 PF00378 ECH: Enoyl-CoA hydrat 98.6 8.7E-07 1.9E-11 81.0 12.5 143 125-289 11-180 (245)
59 PRK07396 dihydroxynaphthoic ac 98.6 1.2E-06 2.6E-11 82.0 13.7 143 131-293 37-200 (273)
60 PRK05980 enoyl-CoA hydratase; 98.6 1E-06 2.2E-11 81.6 13.0 138 131-287 27-188 (260)
61 PRK07938 enoyl-CoA hydratase; 98.6 8.5E-07 1.8E-11 81.9 12.3 139 131-292 25-183 (249)
62 PLN02600 enoyl-CoA hydratase 98.6 1.9E-06 4.1E-11 79.7 14.5 144 131-294 19-182 (251)
63 TIGR03189 dienoyl_CoA_hyt cycl 98.6 1.2E-06 2.6E-11 81.1 13.3 143 125-287 14-176 (251)
64 PRK08260 enoyl-CoA hydratase; 98.6 1.4E-06 3.1E-11 82.4 13.9 137 131-286 28-200 (296)
65 PLN03214 probable enoyl-CoA hy 98.6 1.2E-06 2.5E-11 82.5 13.2 140 130-287 34-196 (278)
66 PRK08139 enoyl-CoA hydratase; 98.5 2.1E-06 4.6E-11 80.1 14.7 136 131-286 35-190 (266)
67 PRK06023 enoyl-CoA hydratase; 98.5 1.5E-06 3.3E-11 80.2 13.6 137 131-286 30-184 (251)
68 PLN02888 enoyl-CoA hydratase 98.5 2.2E-06 4.8E-11 79.9 14.6 138 131-287 34-187 (265)
69 PRK08150 enoyl-CoA hydratase; 98.5 2.6E-06 5.6E-11 79.0 14.9 141 131-293 26-185 (255)
70 PLN02921 naphthoate synthase 98.5 2.1E-06 4.5E-11 82.8 14.8 137 131-286 91-248 (327)
71 PRK08138 enoyl-CoA hydratase; 98.5 3.1E-06 6.7E-11 78.6 15.2 138 131-287 32-186 (261)
72 PRK06127 enoyl-CoA hydratase; 98.5 2.8E-06 6.1E-11 79.3 14.9 137 131-286 35-193 (269)
73 PRK07327 enoyl-CoA hydratase; 98.5 1.8E-06 4E-11 80.4 13.6 143 131-293 36-199 (268)
74 PRK07468 enoyl-CoA hydratase; 98.5 2.5E-06 5.4E-11 79.3 14.4 136 131-286 29-186 (262)
75 TIGR00513 accA acetyl-CoA carb 98.5 2.1E-06 4.6E-11 82.5 14.2 137 121-288 122-268 (316)
76 PRK05995 enoyl-CoA hydratase; 98.5 1.9E-06 4.1E-11 79.9 13.5 136 131-286 28-185 (262)
77 PRK09245 enoyl-CoA hydratase; 98.5 1.9E-06 4.1E-11 80.1 13.5 137 131-286 27-190 (266)
78 PRK05864 enoyl-CoA hydratase; 98.5 1.6E-06 3.5E-11 81.2 13.1 137 131-286 34-197 (276)
79 PRK06494 enoyl-CoA hydratase; 98.5 3.2E-06 6.9E-11 78.4 14.6 138 131-287 28-182 (259)
80 PLN02267 enoyl-CoA hydratase/i 98.5 4E-06 8.6E-11 77.2 15.0 153 124-294 12-191 (239)
81 TIGR02280 PaaB1 phenylacetate 98.5 2.2E-06 4.8E-11 79.2 13.4 137 131-287 23-181 (256)
82 PRK07854 enoyl-CoA hydratase; 98.5 2.6E-06 5.7E-11 78.4 13.9 143 124-286 12-173 (243)
83 PRK06072 enoyl-CoA hydratase; 98.5 2E-06 4.3E-11 79.4 13.0 140 124-284 12-173 (248)
84 PLN03230 acetyl-coenzyme A car 98.5 2.3E-06 5.1E-11 84.7 14.0 131 127-288 198-338 (431)
85 PRK05724 acetyl-CoA carboxylas 98.5 3.2E-06 6.8E-11 81.4 14.6 137 121-288 122-268 (319)
86 PRK08290 enoyl-CoA hydratase; 98.5 1.4E-06 3E-11 82.3 12.1 136 131-287 28-204 (288)
87 PRK06144 enoyl-CoA hydratase; 98.5 2E-06 4.4E-11 79.9 13.0 139 131-287 32-191 (262)
88 PRK12319 acetyl-CoA carboxylas 98.5 4.1E-06 8.8E-11 78.5 14.9 137 121-288 69-215 (256)
89 PRK09120 p-hydroxycinnamoyl Co 98.5 3.7E-06 8E-11 78.8 14.5 137 131-286 32-191 (275)
90 PRK07260 enoyl-CoA hydratase; 98.5 3.2E-06 6.9E-11 78.2 13.8 135 131-286 26-185 (255)
91 PRK08321 naphthoate synthase; 98.5 4E-06 8.6E-11 79.8 14.7 143 131-293 49-229 (302)
92 PRK07112 polyketide biosynthes 98.5 2.7E-06 5.9E-11 78.8 13.2 142 131-294 28-190 (255)
93 PRK06563 enoyl-CoA hydratase; 98.5 3.9E-06 8.5E-11 77.6 14.1 137 131-287 23-180 (255)
94 PRK07827 enoyl-CoA hydratase; 98.5 2.7E-06 5.9E-11 78.8 13.0 142 131-295 30-196 (260)
95 PRK08252 enoyl-CoA hydratase; 98.5 4.3E-06 9.3E-11 77.3 14.3 144 131-294 27-185 (254)
96 PRK05870 enoyl-CoA hydratase; 98.5 1.7E-06 3.8E-11 79.7 11.6 133 131-285 27-181 (249)
97 PRK05862 enoyl-CoA hydratase; 98.5 3.8E-06 8.2E-11 77.7 13.8 138 131-287 28-182 (257)
98 PRK07657 enoyl-CoA hydratase; 98.5 4.6E-06 1E-10 77.3 14.4 136 131-287 28-185 (260)
99 PRK05674 gamma-carboxygeranoyl 98.4 4.3E-06 9.2E-11 78.0 13.5 136 131-286 30-187 (265)
100 CHL00198 accA acetyl-CoA carbo 98.4 4.1E-06 9E-11 80.7 13.6 136 122-288 126-271 (322)
101 PRK08788 enoyl-CoA hydratase; 98.4 3.7E-06 8E-11 79.8 13.2 138 131-287 40-209 (287)
102 PRK08140 enoyl-CoA hydratase; 98.4 5.9E-06 1.3E-10 76.6 14.2 137 131-287 28-187 (262)
103 PRK06213 enoyl-CoA hydratase; 98.4 5.7E-06 1.2E-10 75.3 13.6 133 131-286 26-179 (229)
104 PRK08259 enoyl-CoA hydratase; 98.4 7.8E-06 1.7E-10 75.8 14.3 143 131-293 27-186 (254)
105 PRK08272 enoyl-CoA hydratase; 98.4 6.1E-06 1.3E-10 78.3 13.8 140 125-286 23-211 (302)
106 PRK07799 enoyl-CoA hydratase; 98.4 4E-06 8.6E-11 77.9 12.2 150 124-293 17-193 (263)
107 PRK07659 enoyl-CoA hydratase; 98.4 4.5E-06 9.8E-11 77.4 12.4 135 131-285 30-184 (260)
108 COG1024 CaiD Enoyl-CoA hydrata 98.4 4.4E-06 9.5E-11 77.2 11.9 144 130-293 28-192 (257)
109 KOG1680 Enoyl-CoA hydratase [L 98.4 3.2E-06 7E-11 79.6 10.7 142 131-295 61-222 (290)
110 PRK12478 enoyl-CoA hydratase; 98.3 5.2E-06 1.1E-10 78.9 11.7 139 125-286 18-196 (298)
111 TIGR03200 dearomat_oah 6-oxocy 98.3 1.5E-05 3.2E-10 78.0 14.6 136 131-286 52-211 (360)
112 PRK08184 benzoyl-CoA-dihydrodi 98.2 9.9E-06 2.1E-10 83.3 12.4 140 131-286 49-215 (550)
113 PLN03229 acetyl-coenzyme A car 98.2 1.4E-05 2.9E-10 83.8 13.3 130 128-288 220-359 (762)
114 PLN02157 3-hydroxyisobutyryl-C 98.2 2.2E-05 4.7E-10 77.9 13.4 144 124-287 49-220 (401)
115 PRK05617 3-hydroxyisobutyryl-C 98.2 2.2E-05 4.8E-10 76.1 12.0 132 131-286 27-186 (342)
116 TIGR02440 FadJ fatty oxidation 98.1 3.6E-05 7.7E-10 81.2 13.9 143 131-293 26-191 (699)
117 PLN02851 3-hydroxyisobutyryl-C 98.1 5.7E-05 1.2E-09 75.1 14.4 147 122-288 52-226 (407)
118 PRK11730 fadB multifunctional 98.1 4.7E-05 1E-09 80.5 14.3 138 131-287 31-190 (715)
119 PLN02874 3-hydroxyisobutyryl-C 98.1 5.5E-05 1.2E-09 74.4 13.7 143 123-286 22-191 (379)
120 TIGR03134 malonate_gamma malon 98.1 8.5E-05 1.8E-09 69.0 14.2 131 131-289 45-191 (238)
121 TIGR02437 FadB fatty oxidation 98.1 7E-05 1.5E-09 79.2 15.2 144 124-286 19-189 (714)
122 PLN02988 3-hydroxyisobutyryl-C 98.1 5.5E-05 1.2E-09 74.6 13.5 144 123-286 20-191 (381)
123 TIGR03222 benzo_boxC benzoyl-C 98.1 3.6E-05 7.8E-10 79.1 12.5 140 131-286 45-211 (546)
124 PRK11154 fadJ multifunctional 98.1 8E-05 1.7E-09 78.6 14.9 138 131-287 31-191 (708)
125 TIGR02441 fa_ox_alpha_mit fatt 98.0 0.0001 2.3E-09 78.2 15.2 137 131-287 38-198 (737)
126 TIGR03222 benzo_boxC benzoyl-C 97.8 0.00052 1.1E-08 70.7 14.8 139 131-287 295-465 (546)
127 TIGR03133 malonate_beta malona 97.7 0.00051 1.1E-08 65.1 12.6 139 126-298 70-228 (274)
128 TIGR01117 mmdA methylmalonyl-C 97.7 0.00037 7.9E-09 71.3 11.3 91 128-222 328-432 (512)
129 PRK08184 benzoyl-CoA-dihydrodi 97.6 0.0005 1.1E-08 70.9 11.8 138 131-286 299-468 (550)
130 COG0825 AccA Acetyl-CoA carbox 97.4 0.0011 2.3E-08 63.3 9.4 110 152-290 150-269 (317)
131 PLN02820 3-methylcrotonyl-CoA 97.3 0.0097 2.1E-07 61.8 15.8 92 128-221 379-482 (569)
132 PRK05654 acetyl-CoA carboxylas 97.3 0.0047 1E-07 59.1 12.6 91 126-220 132-233 (292)
133 TIGR00515 accD acetyl-CoA carb 97.2 0.0043 9.4E-08 59.1 11.8 124 126-287 131-265 (285)
134 PF01039 Carboxyl_trans: Carbo 97.2 0.0011 2.5E-08 67.2 8.2 91 129-221 308-410 (493)
135 KOG1681 Enoyl-CoA isomerase [L 97.0 0.00087 1.9E-08 62.2 5.0 108 170-295 116-223 (292)
136 PRK07189 malonate decarboxylas 96.7 0.0095 2E-07 57.3 9.3 93 126-220 79-185 (301)
137 CHL00174 accD acetyl-CoA carbo 96.5 0.042 9E-07 52.8 12.1 123 126-286 144-278 (296)
138 COG0447 MenB Dihydroxynaphthoi 96.3 0.013 2.8E-07 54.3 6.9 134 132-286 44-203 (282)
139 KOG1679 Enoyl-CoA hydratase [L 96.2 0.015 3.4E-07 53.7 6.9 131 135-288 59-213 (291)
140 PF06833 MdcE: Malonate decarb 95.9 0.11 2.3E-06 48.4 11.2 112 148-286 60-186 (234)
141 COG4799 Acetyl-CoA carboxylase 95.4 0.091 2E-06 54.0 9.5 92 127-220 336-439 (526)
142 PLN02820 3-methylcrotonyl-CoA 94.4 0.27 5.9E-06 51.2 10.2 91 126-220 140-244 (569)
143 TIGR01117 mmdA methylmalonyl-C 92.8 0.75 1.6E-05 47.3 10.0 91 126-220 93-193 (512)
144 KOG0016 Enoyl-CoA hydratase/is 91.6 1.4 3E-05 41.7 9.4 96 172-287 99-195 (266)
145 PF01039 Carboxyl_trans: Carbo 91.4 0.46 1E-05 48.5 6.5 91 126-220 68-170 (493)
146 KOG1682 Enoyl-CoA isomerase [L 90.1 2.3 5E-05 39.3 9.1 96 171-286 116-211 (287)
147 COG0777 AccD Acetyl-CoA carbox 86.6 9.8 0.00021 36.5 11.1 88 126-221 133-235 (294)
148 PF08496 Peptidase_S49_N: Pept 82.9 2 4.3E-05 37.6 4.5 44 124-167 102-146 (155)
149 cd06567 Peptidase_S41 C-termin 81.6 10 0.00022 33.8 8.8 79 124-204 63-168 (224)
150 KOG1684 Enoyl-CoA hydratase [L 70.5 17 0.00036 36.3 7.4 91 122-214 48-167 (401)
151 COG4799 Acetyl-CoA carboxylase 68.4 13 0.00028 38.7 6.4 90 127-220 103-202 (526)
152 KOG0540 3-Methylcrotonyl-CoA c 61.3 29 0.00063 35.6 7.2 86 128-218 362-461 (536)
153 PLN00125 Succinyl-CoA ligase [ 61.0 22 0.00048 34.3 6.2 66 122-192 178-245 (300)
154 TIGR02886 spore_II_AA anti-sig 60.5 58 0.0013 25.3 7.6 76 123-202 10-91 (106)
155 cd07560 Peptidase_S41_CPP C-te 59.5 66 0.0014 29.0 8.7 89 114-204 41-155 (211)
156 PF03572 Peptidase_S41: Peptid 57.7 52 0.0011 27.4 7.3 70 134-204 15-114 (169)
157 PF03808 Glyco_tran_WecB: Glyc 55.8 74 0.0016 27.6 8.1 67 122-194 49-115 (172)
158 TIGR00377 ant_ant_sig anti-ant 54.7 82 0.0018 24.2 7.6 72 123-198 14-91 (108)
159 COG0793 Prc Periplasmic protea 54.4 46 0.001 33.4 7.4 71 132-203 214-310 (406)
160 PF13607 Succ_CoA_lig: Succiny 52.6 48 0.001 28.2 6.2 61 122-190 29-91 (138)
161 cd06844 STAS Sulphate Transpor 51.3 71 0.0015 24.7 6.6 37 123-159 10-46 (100)
162 COG0074 SucD Succinyl-CoA synt 49.6 42 0.00091 32.4 5.9 79 123-216 174-254 (293)
163 PTZ00187 succinyl-CoA syntheta 49.4 49 0.0011 32.2 6.5 66 122-192 197-264 (317)
164 TIGR00225 prc C-terminal pepti 49.3 83 0.0018 30.2 8.1 72 132-204 162-258 (334)
165 PLN02522 ATP citrate (pro-S)-l 49.0 48 0.001 35.2 6.8 66 122-192 195-262 (608)
166 cd07041 STAS_RsbR_RsbS_like Su 47.8 1.3E+02 0.0028 23.3 8.2 81 123-203 12-94 (109)
167 cd07563 Peptidase_S41_IRBP Int 46.9 1.2E+02 0.0026 27.7 8.4 52 153-204 96-181 (250)
168 smart00245 TSPc tail specific 44.1 1.3E+02 0.0029 26.3 8.0 73 131-204 38-136 (192)
169 PHA00099 minor capsid protein 42.8 1.3E+02 0.0028 25.9 7.2 39 249-291 84-122 (147)
170 COG0757 AroQ 3-dehydroquinate 42.7 68 0.0015 27.9 5.6 29 157-186 70-98 (146)
171 PRK06091 membrane protein FdrA 41.0 62 0.0014 34.0 6.1 69 122-192 221-291 (555)
172 PLN00049 carboxyl-terminal pro 40.4 1.4E+02 0.0031 29.4 8.3 71 131-202 204-301 (389)
173 PRK11186 carboxy-terminal prot 38.0 1.4E+02 0.003 32.1 8.2 68 133-201 365-458 (667)
174 cd06533 Glyco_transf_WecG_TagA 37.7 2.2E+02 0.0048 24.6 8.3 67 122-194 47-113 (171)
175 cd07561 Peptidase_S41_CPP_like 37.0 2.1E+02 0.0046 26.6 8.5 69 133-202 76-182 (256)
176 TIGR01019 sucCoAalpha succinyl 36.1 1.1E+02 0.0024 29.3 6.5 64 122-192 171-237 (286)
177 PF01740 STAS: STAS domain; I 31.4 1.6E+02 0.0036 23.0 6.0 77 123-199 11-97 (117)
178 TIGR00282 metallophosphoestera 31.3 1.1E+02 0.0023 29.1 5.5 65 123-187 2-66 (266)
179 TIGR02364 dha_pts dihydroxyace 31.2 2.3E+02 0.005 23.6 7.0 69 114-185 18-91 (125)
180 PF01381 HTH_3: Helix-turn-hel 30.1 77 0.0017 21.5 3.4 32 246-277 12-43 (55)
181 PF00549 Ligase_CoA: CoA-ligas 29.7 1.3E+02 0.0029 26.1 5.4 55 139-193 61-121 (153)
182 PRK05678 succinyl-CoA syntheta 28.6 1.9E+02 0.0041 27.7 6.8 64 122-192 173-239 (291)
183 TIGR02675 tape_meas_nterm tape 27.1 1.1E+02 0.0024 23.2 4.0 28 245-273 46-73 (75)
184 cd01834 SGNH_hydrolase_like_2 27.0 1.6E+02 0.0036 24.4 5.6 66 122-190 2-71 (191)
185 TIGR00615 recR recombination p 26.7 2.2E+02 0.0047 26.0 6.4 81 108-190 83-173 (195)
186 COG1366 SpoIIAA Anti-anti-sigm 26.1 1.2E+02 0.0025 24.3 4.3 38 124-163 16-53 (117)
187 cd07043 STAS_anti-anti-sigma_f 26.1 2.7E+02 0.0059 20.5 7.4 79 123-202 10-90 (99)
188 COG1512 Beta-propeller domains 25.7 1.5E+02 0.0032 28.4 5.4 57 119-175 31-89 (271)
189 TIGR00696 wecB_tagA_cpsF bacte 25.6 4.7E+02 0.01 23.1 8.6 65 123-194 50-114 (177)
190 COG3904 Predicted periplasmic 25.4 1.6E+02 0.0035 27.5 5.4 57 125-185 51-107 (245)
191 TIGR02763 chlamy_scaf chlamydi 24.8 3.2E+02 0.0069 22.7 6.4 34 249-284 54-87 (114)
192 smart00250 PLEC Plectin repeat 24.5 49 0.0011 21.7 1.4 17 268-284 20-36 (38)
193 KOG0781 Signal recognition par 24.2 5E+02 0.011 27.3 9.1 109 155-280 352-467 (587)
194 PRK13170 hisH imidazole glycer 23.7 63 0.0014 28.7 2.4 29 162-190 45-80 (196)
195 cd07382 MPP_DR1281 Deinococcus 22.6 2E+02 0.0042 27.0 5.6 64 123-188 1-66 (255)
196 TIGR03070 couple_hipB transcri 22.6 1.8E+02 0.0039 19.4 4.1 32 246-277 18-49 (58)
197 cd07562 Peptidase_S41_TRI Tric 22.5 5E+02 0.011 23.9 8.3 83 117-204 82-187 (266)
198 KOG3093 5-formyltetrahydrofola 22.4 1.3E+02 0.0029 27.4 4.2 45 136-180 31-75 (200)
199 cd02433 Nodulin-21_like_2 Nodu 22.3 1.6E+02 0.0034 27.4 4.8 46 242-288 100-150 (234)
200 TIGR00661 MJ1255 conserved hyp 21.6 1.4E+02 0.0031 28.0 4.5 35 155-190 2-37 (321)
201 TIGR01729 taurine_ABC_bnd taur 21.5 2E+02 0.0043 26.5 5.4 45 246-290 227-292 (300)
202 TIGR02717 AcCoA-syn-alpha acet 21.2 2.2E+02 0.0048 28.7 6.0 63 122-192 178-242 (447)
203 PRK14635 hypothetical protein; 20.4 2E+02 0.0044 25.1 4.9 37 129-165 48-85 (162)
204 PF00681 Plectin: Plectin repe 20.4 57 0.0012 22.2 1.1 19 266-284 18-36 (45)
205 TIGR00673 cynS cyanate hydrata 20.4 2.6E+02 0.0057 24.5 5.5 32 247-278 25-56 (150)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-64 Score=458.27 Aligned_cols=256 Identities=48% Similarity=0.741 Sum_probs=230.7
Q ss_pred ccccccccchhhhhhhhhcccccccccccceeeeecCCCcccccCcccCccceeeccCCCCCCCCCccccccCCCCCCCC
Q 022161 26 SHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPP 105 (301)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (301)
+.++...+.|...++|.+....+|..++++-++++++.-|++ +.|+++.+..+|. ++....+ +|
T Consensus 15 ~~~~~~~l~P~~~~~~~~~~~~~r~~~~~~~~s~~sg~~~~~--------~~~~~~~~~~~p~---~~~~~~~---rG-- 78 (275)
T KOG0840|consen 15 SPKRFSGLNPASTSNFPKQRNVRRQLKSSTPKSLRSGGSSNS--------RGWSLRAPILVPR---FPIESPG---RG-- 78 (275)
T ss_pred ccchhcccCchhhhhccccccchhhhhccCcccccccCCCCC--------CcccccccccCCc---ceeeccc---cC--
Confidence 555666777888888887777777777777788888887763 3799999999983 3322222 33
Q ss_pred CccchhhcchhhhhcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEE
Q 022161 106 PMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVST 185 (301)
Q Consensus 106 p~~~~~~~dv~s~L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~T 185 (301)
.++++|+||+||++|||||+++|||++++.|++||+||+.+|+.|+|+||||||||++++|++|||+|+++++||.|
T Consensus 79 ---~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~T 155 (275)
T KOG0840|consen 79 ---RERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVST 155 (275)
T ss_pred ---CCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCcee
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhc
Q 022161 186 VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTD 265 (301)
Q Consensus 186 vv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~ 265 (301)
+|.|+|||+|++|+++|.||+|+++||+++|||||.+++.|++.|+.++++|+.++++.+.++|++|||++.|+|.++++
T Consensus 156 ic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~d 235 (275)
T KOG0840|consen 156 ICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMD 235 (275)
T ss_pred eehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHHcCCceeecCCccccchhhHhhcC
Q 022161 266 RDFFMSAEEAKDYGLIDGVVMNPHKILQPVAAAAG 300 (301)
Q Consensus 266 rd~~lTa~EA~e~GLID~I~~~~~~al~~~~~~~~ 300 (301)
||+||+|+||+||||||+|++++.+.......+.|
T Consensus 236 Rd~fmsa~EA~eyGliD~v~~~p~~~~~~~~~~~e 270 (275)
T KOG0840|consen 236 RDRFMSAEEAKEYGLIDKVIDHPPETRVDDGTLVE 270 (275)
T ss_pred ccccCCHHHHHHhcchhhhhcCCcccccccchhhh
Confidence 99999999999999999999988888776655544
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=5.1e-57 Score=402.95 Aligned_cols=180 Identities=62% Similarity=0.977 Sum_probs=175.9
Q ss_pred hhhcchhhhhcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcC
Q 022161 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 110 ~~~~dv~s~L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G 189 (301)
++..|+|++|+++|+|||+|+|++.+++.+++||++|+++++.++|+||||||||+|++|++|||+|+++++||+|+|.|
T Consensus 15 ~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~G 94 (200)
T COG0740 15 ERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTICMG 94 (200)
T ss_pred CChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEEEec
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
+|||||++|+++|++|||+++|||++|||||+++.+|+++|++++++|+.++++.+.++|+++||++.|+|+++++||+|
T Consensus 95 ~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~ 174 (200)
T COG0740 95 QAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTW 174 (200)
T ss_pred HHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCceeecCCcc
Q 022161 270 MSAEEAKDYGLIDGVVMNPH 289 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~~~~ 289 (301)
|||+||++|||||+|++...
T Consensus 175 msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 175 MSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred CCHHHHHHcCCcceeccccc
Confidence 99999999999999998653
No 3
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=6.5e-54 Score=389.90 Aligned_cols=179 Identities=53% Similarity=0.870 Sum_probs=174.5
Q ss_pred hhhcchhhhhcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcC
Q 022161 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 110 ~~~~dv~s~L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G 189 (301)
+++.|+|++|+++|||||+|+||+.+++.+++||++|+.+++.++|+||||||||+|++|++|||+|++++.||+|+|.|
T Consensus 42 ~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G 121 (221)
T PRK14514 42 VTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTG 121 (221)
T ss_pred CcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
+|||||++|+++|++|+|+|.|||++|||||+++..|+++|+++++++++++++.+.++|+++||++.++|++++++|+|
T Consensus 122 ~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~w 201 (221)
T PRK14514 122 MAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYW 201 (221)
T ss_pred EehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCceeecCCc
Q 022161 270 MSAEEAKDYGLIDGVVMNP 288 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~~~ 288 (301)
|||+||++|||||+|+++.
T Consensus 202 mtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 202 MTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred CCHHHHHHcCCccEEeecC
Confidence 9999999999999999753
No 4
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=2.8e-53 Score=385.55 Aligned_cols=176 Identities=48% Similarity=0.782 Sum_probs=171.4
Q ss_pred chhhhhcCCcEEEEccccChh----------HHHHHHHHHHhhhhcCCCCceEEEEcCCCCc---------HHHHHHHHH
Q 022161 114 NVLSQLFQHRIIRCGGPVEDD----------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGS---------VTAGMAIFD 174 (301)
Q Consensus 114 dv~s~L~~~rII~L~G~Idd~----------~a~~iiaqL~~L~~~d~~k~I~L~INSPGGs---------V~ag~aIyd 174 (301)
|+|++|+++|||||+|+|+++ +++.|++||++|+.+++.++|+||||||||+ +++|++|||
T Consensus 22 d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD 101 (222)
T PRK12552 22 DLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICD 101 (222)
T ss_pred CHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHH
Confidence 799999999999999999999 9999999999999999999999999999988 778899999
Q ss_pred HHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Q 022161 175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTG 254 (301)
Q Consensus 175 ~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG 254 (301)
+|++++.+|+|+|.|+|||+|++|+++|++|+|+++|||++|||||+++..|++.|++++++|++++++.+.++|+++||
T Consensus 102 ~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG 181 (222)
T PRK12552 102 TMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTG 181 (222)
T ss_pred HHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCceeecCCcc
Q 022161 255 QTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPH 289 (301)
Q Consensus 255 ~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~ 289 (301)
++.|+|.++++||+||||+||++|||||+|++...
T Consensus 182 ~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~ 216 (222)
T PRK12552 182 QTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRK 216 (222)
T ss_pred CCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCC
Confidence 99999999999999999999999999999998653
No 5
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=6.8e-53 Score=378.56 Aligned_cols=179 Identities=52% Similarity=0.833 Sum_probs=174.4
Q ss_pred hhhcchhhhhcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcC
Q 022161 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 110 ~~~~dv~s~L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G 189 (301)
+++.|+|++|+++|||||+++|++++++.|+++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|
T Consensus 15 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G 94 (201)
T PRK14513 15 ERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVG 94 (201)
T ss_pred ccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
+|||||++|+++|++|+|+|.|||++|||||+++..|++.|++++++|+++.++.+.++|+++||++.++|.+++++|+|
T Consensus 95 ~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~ 174 (201)
T PRK14513 95 IAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYF 174 (201)
T ss_pred eehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCceeecCCc
Q 022161 270 MSAEEAKDYGLIDGVVMNP 288 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~~~ 288 (301)
|||+||++|||||+|++..
T Consensus 175 msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 175 MSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred cCHHHHHHcCCCcEEeccC
Confidence 9999999999999999753
No 6
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=1.8e-52 Score=375.78 Aligned_cols=179 Identities=41% Similarity=0.768 Sum_probs=174.2
Q ss_pred hhhcchhhhhcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcC
Q 022161 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 110 ~~~~dv~s~L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G 189 (301)
.+|.|+|++|+++|||||+|+||+++++.+++||++|+.+++.++|.||||||||+|++|++|||+|++++.||+|+|.|
T Consensus 18 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~Tv~~G 97 (200)
T CHL00028 18 ATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFVKPDVHTICLG 97 (200)
T ss_pred cccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCC-CCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG-AQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g-~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~ 268 (301)
+|||||++|+++|++|+|++.|||++|||||+++ ..|++.|++++++++.++++.+.++|+++||++.++|++++++|+
T Consensus 98 ~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~ 177 (200)
T CHL00028 98 LAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDV 177 (200)
T ss_pred ehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCc
Confidence 9999999999999999999999999999999988 899999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHcCCceeecCCc
Q 022161 269 FMSAEEAKDYGLIDGVVMNP 288 (301)
Q Consensus 269 ~lTa~EA~e~GLID~I~~~~ 288 (301)
||||+||++|||||+|+++.
T Consensus 178 ~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 178 FMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred cCCHHHHHHcCCCcEEeecC
Confidence 99999999999999999754
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=7e-52 Score=370.85 Aligned_cols=178 Identities=64% Similarity=0.967 Sum_probs=173.4
Q ss_pred hhcchhhhhcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCc
Q 022161 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (301)
Q Consensus 111 ~~~dv~s~L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~ 190 (301)
++.|+|++|+++|||||+|+||+++++.++++|++|+.+++.++|+||||||||+|++|++|||+|++++.||+|+|.|+
T Consensus 14 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~ 93 (196)
T PRK12551 14 RAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGL 93 (196)
T ss_pred cccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEE
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
|||+|++|+++|++|+|+|.|||++|||||+++..|++.|++++++++.+.++.+.++|+++||++.++|.+++++|+||
T Consensus 94 AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~m 173 (196)
T PRK12551 94 AASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFM 173 (196)
T ss_pred ehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCC
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCceeecCCc
Q 022161 271 SAEEAKDYGLIDGVVMNP 288 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~~~ 288 (301)
||+||++|||||+|+++.
T Consensus 174 sa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 174 SPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CHHHHHHcCCCcEEeccC
Confidence 999999999999999753
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=6.1e-48 Score=343.89 Aligned_cols=177 Identities=67% Similarity=1.054 Sum_probs=171.9
Q ss_pred hhhcchhhhhcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcC
Q 022161 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 110 ~~~~dv~s~L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G 189 (301)
+++.|++++|+++|+|||+|+|++.+++.++++|++++.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|
T Consensus 14 ~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G 93 (191)
T TIGR00493 14 ERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIG 93 (191)
T ss_pred cccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 35679999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
+|+|+|++|+++|++++|+|.|||++|||||+++..|++.|++++++++.++++.+.++|+++||++.+++++++++|+|
T Consensus 94 ~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~ 173 (191)
T TIGR00493 94 QAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFF 173 (191)
T ss_pred eeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcc
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCceeecC
Q 022161 270 MSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~ 286 (301)
|||+||++|||||+|++
T Consensus 174 lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 174 MSAEEAKEYGLIDSVLT 190 (191)
T ss_pred CcHHHHHHcCCccEEec
Confidence 99999999999999975
No 9
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.1e-47 Score=343.90 Aligned_cols=180 Identities=39% Similarity=0.699 Sum_probs=173.6
Q ss_pred chhhhhcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccch
Q 022161 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS 193 (301)
Q Consensus 114 dv~s~L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AAS 193 (301)
|++++|+++|+|||+|+|++++++.|+++|++++..++.++|+||||||||+|++|++|||+|++++.||+|+|.|.|||
T Consensus 15 ~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~AaS 94 (197)
T PRK14512 15 KSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLVAS 94 (197)
T ss_pred hHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeeeHh
Confidence 58999999999999999999999999999999998788899999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 022161 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAE 273 (301)
Q Consensus 194 aaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~ 273 (301)
||++|+++|++|+|++.||+++|+|||+++..|++.|++++++++.++++.+.++|+++||++.++|++++++|+||||+
T Consensus 95 aaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~ 174 (197)
T PRK14512 95 AAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSS 174 (197)
T ss_pred HHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeecCCccccch
Q 022161 274 EAKDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 274 EA~e~GLID~I~~~~~~al~ 293 (301)
||++|||||+|+++..+.++
T Consensus 175 EA~~yGliD~I~~~~~~l~~ 194 (197)
T PRK14512 175 SAVKYGLVFEVVETRLELEE 194 (197)
T ss_pred HHHHcCCccEeecCcHHhHh
Confidence 99999999999998766554
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=5.3e-47 Score=339.95 Aligned_cols=182 Identities=64% Similarity=1.013 Sum_probs=176.0
Q ss_pred hhhcchhhhhcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcC
Q 022161 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 110 ~~~~dv~s~L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G 189 (301)
+.|.|++++|+++|+|||+|+|++++++.++++|++++.+++.++|+||||||||++++|++|||+|++++.||+|+|.|
T Consensus 19 ~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~~~~v~t~~~G 98 (200)
T PRK00277 19 ERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPDVSTICIG 98 (200)
T ss_pred cccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 45789999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
.|+|+|++|+++|++++|++.||+++|+|||.++..|++.|++.+++++.++++.+.++|+++||++.+++++++++|+|
T Consensus 99 ~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 178 (200)
T PRK00277 99 QAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNF 178 (200)
T ss_pred EeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcc
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCceeecCCcccc
Q 022161 270 MSAEEAKDYGLIDGVVMNPHKI 291 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~~~~~a 291 (301)
|||+||++|||||+|+++..++
T Consensus 179 lsa~EA~e~GliD~Ii~~~~~~ 200 (200)
T PRK00277 179 MSAEEAKEYGLIDEVLTKRKEA 200 (200)
T ss_pred ccHHHHHHcCCccEEeecCCCC
Confidence 9999999999999999987654
No 11
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.5e-45 Score=332.20 Aligned_cols=179 Identities=56% Similarity=0.916 Sum_probs=172.8
Q ss_pred hcchhhhhcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCcc
Q 022161 112 FQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLA 191 (301)
Q Consensus 112 ~~dv~s~L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~A 191 (301)
..|++++|+++|+|||+|+|++.+++.++++|++++.+++.++|+||||||||++++|++|||+|+.++.||+|+|.|.|
T Consensus 25 ~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 25 ESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred cccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEeeh
Confidence 36899999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred chHhHHHHhcCCCCceEecCCeEEEeecCC--CCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPL--GGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 192 ASaaa~Il~aG~kgkR~a~PnS~imIHqp~--~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
+|+|++|+++|++|+|+|.|||++|+|||. ++..|++.|++.+++++.++++.+.++|+++||++.+++++++++++|
T Consensus 105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~ 184 (207)
T PRK12553 105 ASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKW 184 (207)
T ss_pred hhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcc
Confidence 999999999999999999999999999998 567899999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCceeecCCccc
Q 022161 270 MSAEEAKDYGLIDGVVMNPHK 290 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~~~~~ 290 (301)
|||+||++|||||+|+++..+
T Consensus 185 lta~EA~e~GliD~I~~~~~d 205 (207)
T PRK12553 185 LTAEEAKDYGLVDQIITSYRD 205 (207)
T ss_pred ccHHHHHHcCCccEEcCchhh
Confidence 999999999999999988765
No 12
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=3e-46 Score=327.81 Aligned_cols=178 Identities=44% Similarity=0.737 Sum_probs=169.5
Q ss_pred hhhcchhhhhcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcC
Q 022161 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 110 ~~~~dv~s~L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G 189 (301)
++|+|+|++|+++|+|||+|+||+++++.++++|.+|+.+++.++|+|+||||||++.+|++|||+|+.++.+|+|+|.|
T Consensus 4 ~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G 83 (182)
T PF00574_consen 4 EEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLG 83 (182)
T ss_dssp EEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred cEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeC
Confidence 57999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
.|+|+|++|+++|++++|++.|+|++|+|+|..+..|+..++.++++++.+.++.+.++|+++||+++++|++++++|+|
T Consensus 84 ~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~ 163 (182)
T PF00574_consen 84 LAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTW 163 (182)
T ss_dssp EEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEE
T ss_pred ccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCceeecCC
Q 022161 270 MSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~~ 287 (301)
|+|+||++|||||+|+++
T Consensus 164 l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 164 LSAEEALEYGIIDEIIES 181 (182)
T ss_dssp EEHHHHHHHTSSSEEESS
T ss_pred ccHHHHHHcCCCCEeccC
Confidence 999999999999999975
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=1.9e-44 Score=315.26 Aligned_cols=171 Identities=65% Similarity=1.072 Sum_probs=166.7
Q ss_pred chhhhhcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccch
Q 022161 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS 193 (301)
Q Consensus 114 dv~s~L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AAS 193 (301)
|++++|+++|+|||+|+|++++++.++++|++++.+++.++|+|+||||||++++|++|||.|+.++.+|+|+|.|+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 68999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 022161 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAE 273 (301)
Q Consensus 194 aaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~ 273 (301)
+|++|+++|++|+|++.||+++|+|+|+.+..|+..|+..+++++.++++.+.++|+++||++.+++.+++++++|||++
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~ 160 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAE 160 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceee
Q 022161 274 EAKDYGLIDGV 284 (301)
Q Consensus 274 EA~e~GLID~I 284 (301)
||++|||||+|
T Consensus 161 EA~e~GiiD~V 171 (171)
T cd07017 161 EAKEYGLIDKI 171 (171)
T ss_pred HHHHcCCCccC
Confidence 99999999986
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=1.9e-43 Score=307.00 Aligned_cols=162 Identities=50% Similarity=0.784 Sum_probs=158.6
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccchHhHHHHhcC
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG 202 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG 202 (301)
|+|||.|+|++.+++.++++|++++.+++.++|+|+||||||+++++++|||+|+.++.||+|+|.|+|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 79999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCce
Q 022161 203 TKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLID 282 (301)
Q Consensus 203 ~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID 282 (301)
++|+|++.|++++|+|||+++..|+..|++++++++.+.++.+.++|+++||++.++|++++++++||||+||++|||||
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCC
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 022161 283 GV 284 (301)
Q Consensus 283 ~I 284 (301)
+|
T Consensus 161 ~i 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred cC
Confidence 86
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=1.8e-33 Score=242.19 Aligned_cols=156 Identities=29% Similarity=0.412 Sum_probs=148.2
Q ss_pred EEEEccccCh---hHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccchHhHHHHh
Q 022161 124 IIRCGGPVED---DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLS 200 (301)
Q Consensus 124 II~L~G~Idd---~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~ 200 (301)
-|+|.|+|++ .+++.+.++|..++.+ ++|.|+||||||++.++++|++.|+.+++||+|++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 4899999999 7999999999877554 899999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCC
Q 022161 201 AGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGL 280 (301)
Q Consensus 201 aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GL 280 (301)
+|+. |++.|+++||+|+|..+..|+..+++...+++.++++.+.+.|++++|++.+++.+++.+++||+++||+++||
T Consensus 79 a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~Gl 156 (160)
T cd07016 79 AGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGF 156 (160)
T ss_pred cCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCC
Confidence 9998 99999999999999988888888898889999999999999999999999999999999999999999999999
Q ss_pred ceee
Q 022161 281 IDGV 284 (301)
Q Consensus 281 ID~I 284 (301)
||+|
T Consensus 157 iD~v 160 (160)
T cd07016 157 ADEI 160 (160)
T ss_pred CCcC
Confidence 9986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=100.00 E-value=2.2e-33 Score=246.91 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=144.5
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEc---CccchHhHHHHh
Q 022161 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLS 200 (301)
Q Consensus 124 II~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~---G~AASaaa~Il~ 200 (301)
+|.+.|.|++...+.+.+.|..++. ++.++|+|+||||||.+.++++||++|+..++||+|+|. |+|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~~-~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHhc-CCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 6889999999999999999887664 568999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCceEecCCeEEEeecCCCCCCCC-----CcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHH
Q 022161 201 AGTKGKRYSLPNSRIMIHQPLGGAQGG-----QSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEA 275 (301)
Q Consensus 201 aG~kgkR~a~PnS~imIHqp~~g~~G~-----~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA 275 (301)
+|++ |+|.|++++|+|+|..+ .|+ ..|.+.+..++.++++ ++++||++.+.+++++++++|||++||
T Consensus 82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA 153 (172)
T cd07015 82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEA 153 (172)
T ss_pred hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHH
Confidence 9999 99999999999999754 354 4455655655555543 799999999999999999999999999
Q ss_pred HHcCCceeecCCccccch
Q 022161 276 KDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 276 ~e~GLID~I~~~~~~al~ 293 (301)
++||+||.|..+..++|+
T Consensus 154 ~~~G~iD~ia~~~~~ll~ 171 (172)
T cd07015 154 LKYGVIEVVARDINELLK 171 (172)
T ss_pred HHcCCceeeeCCHHHHhh
Confidence 999999999999988876
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.97 E-value=3.9e-31 Score=226.79 Aligned_cols=159 Identities=33% Similarity=0.538 Sum_probs=147.7
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccchHhHHHHhcCC
Q 022161 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT 203 (301)
Q Consensus 124 II~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~ 203 (301)
||+|+|+|++.+.+.+++.|..++.+++.+.|+|++|||||++.++..|+++|+.+++||++++.|.|+|+|++|+++|+
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCceEecCCeEEEeecCCCCCCCCC--cchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCc
Q 022161 204 KGKRYSLPNSRIMIHQPLGGAQGGQ--SDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLI 281 (301)
Q Consensus 204 kgkR~a~PnS~imIHqp~~g~~G~~--~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLI 281 (301)
+ |++.|++.+++|+|..+..+.. .+.+...+.+..+.+.+.+.++++||++.+++++++.++.||+++||+++|||
T Consensus 81 ~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLv 158 (161)
T cd00394 81 K--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLV 158 (161)
T ss_pred E--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCc
Confidence 8 9999999999999987655544 55555667777788999999999999999999999999999999999999999
Q ss_pred eee
Q 022161 282 DGV 284 (301)
Q Consensus 282 D~I 284 (301)
|+|
T Consensus 159 D~i 161 (161)
T cd00394 159 DAL 161 (161)
T ss_pred CcC
Confidence 986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.96 E-value=2e-28 Score=216.87 Aligned_cols=168 Identities=21% Similarity=0.276 Sum_probs=143.4
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEc---CccchHhHHHHh
Q 022161 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLS 200 (301)
Q Consensus 124 II~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~---G~AASaaa~Il~ 200 (301)
+|.|.|.|++..++.+.++|+.++.+ +.+.|+|+||||||++.++.+|++.|+.+++||++.|. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 68999999999999999999998854 58999999999999999999999999999999999998 999999999999
Q ss_pred cCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCC
Q 022161 201 AGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGL 280 (301)
Q Consensus 201 aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GL 280 (301)
+||. |++.|+++|++|+|..+..+...+...+.+.+..+.. +...|++++|++.+.+++++..+.||+++||+++||
T Consensus 82 a~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Gl 158 (187)
T cd07020 82 AAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGV 158 (187)
T ss_pred hCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCC
Confidence 9999 9999999999999975433333333444454444444 455678999999999999998899999999999999
Q ss_pred ceeecCCccccchhh
Q 022161 281 IDGVVMNPHKILQPV 295 (301)
Q Consensus 281 ID~I~~~~~~al~~~ 295 (301)
||+|+++..++++.+
T Consensus 159 vd~v~~~~~~~~~~~ 173 (187)
T cd07020 159 IDLIAADLNELLKKL 173 (187)
T ss_pred cccccCCHHHHHHHc
Confidence 999997765555543
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.95 E-value=5.9e-27 Score=207.00 Aligned_cols=162 Identities=21% Similarity=0.334 Sum_probs=139.9
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccchHhHHHHhcCC
Q 022161 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT 203 (301)
Q Consensus 124 II~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~ 203 (301)
+|.+.|.|++..++.+.+.|..+..+ +.+.|+|+||||||.+.++..|++.|+.+++||++++.|.|+|+|++|+++|+
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 68899999999999999999887765 48899999999999999999999999999999999999999999999999999
Q ss_pred CCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCC-------------ccc
Q 022161 204 KGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRD-------------FFM 270 (301)
Q Consensus 204 kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd-------------~~l 270 (301)
+ ++|.|++.++.|+|.....+...+ .|....+...+. -+++++|++.+.++++++++ .||
T Consensus 82 ~--i~m~p~a~iG~~~~v~~~~~~~~~----~K~~~~~~~~~~-~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~l 154 (178)
T cd07021 82 E--IYMAPGATIGAAEPIPGDGNGAAD----EKVQSYWRAKMR-AAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTL 154 (178)
T ss_pred e--EEECCCCeEecCeeEcCCCccchh----HHHHHHHHHHHH-HHHHHhCCCHHHHHHHhhhhcccccccccccceeee
Confidence 9 999999999999997654333222 122222333344 47999999999999999998 599
Q ss_pred CHHHHHHcCCceeecCCccccch
Q 022161 271 SAEEAKDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~~~~~al~ 293 (301)
|++||+++|++|.|..+..++|+
T Consensus 155 ta~eA~~~g~~d~ia~~~~~ll~ 177 (178)
T cd07021 155 TADEALKVGYAEGIAGSLDELLV 177 (178)
T ss_pred CHHHHHHhCCeEEEECCHHHHhh
Confidence 99999999999999999988775
No 20
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.88 E-value=2.7e-22 Score=191.58 Aligned_cols=171 Identities=22% Similarity=0.273 Sum_probs=136.1
Q ss_pred cEEEEccccChhH-------HHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCC--CeEEEEcCccch
Q 022161 123 RIIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRP--DVSTVCVGLAAS 193 (301)
Q Consensus 123 rII~L~G~Idd~~-------a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~--pV~Tvv~G~AAS 193 (301)
-+|++.|.|.... .+.+.+.|..+..+++.++|.|+||||||+|.++..||++|+.++. ||++++.++|||
T Consensus 62 avi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AAS 141 (317)
T COG0616 62 AVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAAS 141 (317)
T ss_pred EEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecc
Confidence 3688899998543 6677788888888889999999999999999999999999999975 699999999999
Q ss_pred HhHHHHhcCCCCceEecCCeEEEeecCCC------------C------CCCCCcch------------HHHHHHHHHHHH
Q 022161 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLG------------G------AQGGQSDI------------DLQANEMLHHKA 243 (301)
Q Consensus 194 aaa~Il~aG~kgkR~a~PnS~imIHqp~~------------g------~~G~~~di------------~~~akel~~~k~ 243 (301)
+||||+|+|++ |+|.|+|.++.-.+.. | ..|...++ +...+++....+
T Consensus 142 GGY~IA~aAd~--I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~ 219 (317)
T COG0616 142 GGYYIALAADK--IVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYD 219 (317)
T ss_pred hhhhhhccCCE--EEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999875332211 0 12332222 122344555677
Q ss_pred HHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccchhhHh
Q 022161 244 NLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVAA 297 (301)
Q Consensus 244 ~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~~~~ 297 (301)
.|.+.+++.|+.+.+++.+..++..| ++++|++.||||++++ .+++++.+..
T Consensus 220 ~F~~~V~~~R~~~~~~~~~~a~g~v~-~g~~A~~~gLVDelg~-~~~av~~~~~ 271 (317)
T COG0616 220 EFVDKVAEGRGLSDEAVDKLATGRVW-TGQQALELGLVDELGG-LDDAVKDAAE 271 (317)
T ss_pred HHHHHHHhcCCCChhHHHHHhcccee-cHHHhhhcCCchhcCC-HHHHHHHHHH
Confidence 89999999999999998888888777 9999999999999986 4455555443
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.88 E-value=1.4e-21 Score=175.68 Aligned_cols=169 Identities=18% Similarity=0.250 Sum_probs=136.6
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhC--CCeEEEEcCccchHhHHHHhc
Q 022161 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGLAASMGAFLLSA 201 (301)
Q Consensus 124 II~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~--~pV~Tvv~G~AASaaa~Il~a 201 (301)
+|+|.|+|+ .+.+.+.+.|..+..++..+.|+|++|||||++..+..|++.|+.++ +||++++.|.|+|+|++|+++
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence 789999998 56678889999888888899999999999999999999999999998 999999999999999999999
Q ss_pred CCCCceEecCCeEEEeecCCC------------C------CCCCCc-------chHH-----HHHHHHHHHHHHHHHHHH
Q 022161 202 GTKGKRYSLPNSRIMIHQPLG------------G------AQGGQS-------DIDL-----QANEMLHHKANLNGYLSY 251 (301)
Q Consensus 202 G~kgkR~a~PnS~imIHqp~~------------g------~~G~~~-------di~~-----~akel~~~k~~~~~i~A~ 251 (301)
|++ |+|.|++.++...+.. | ..|+.+ ++.. ....+..+.+.|.+.+++
T Consensus 83 aD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~ 160 (207)
T TIGR00706 83 ADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAK 160 (207)
T ss_pred CCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 9999999865433211 1 123222 1222 222344566778888999
Q ss_pred hhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccchhhHh
Q 022161 252 HTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVAA 297 (301)
Q Consensus 252 ~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~~~~ 297 (301)
.+|++.+++++++++..| +++||+++||||+|.. .+++++.+..
T Consensus 161 ~R~~~~~~~~~~~~~~~~-~~~~A~~~gLvD~i~~-~~~~~~~~~~ 204 (207)
T TIGR00706 161 GRNLPVEDVKKFADGRVF-TGRQALKLRLVDKLGT-EDDALKWLAE 204 (207)
T ss_pred cCCCCHHHHHHHhcCCcc-cHHHHHHcCCCcccCC-HHHHHHHHHH
Confidence 999999999999888765 9999999999999974 6676665543
No 22
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.87 E-value=3e-21 Score=173.05 Aligned_cols=168 Identities=21% Similarity=0.293 Sum_probs=135.1
Q ss_pred cEEEEccccC---hhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhh---CCCeEEEEcCccchHhH
Q 022161 123 RIIRCGGPVE---DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGA 196 (301)
Q Consensus 123 rII~L~G~Id---d~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~---~~pV~Tvv~G~AASaaa 196 (301)
-+|++.|+|+ +.+...+.++|..++.++..+.|+|++|||||++..+..|++.|+.+ ++||++++.|.|+|+|+
T Consensus 3 ~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~ 82 (208)
T cd07023 3 AVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGY 82 (208)
T ss_pred EEEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHH
Confidence 3689999999 78999999999999888889999999999999999999999988766 47999999999999999
Q ss_pred HHHhcCCCCceEecCCeEEEeecCCC------------C------CCCCCc-------ch-----HHHHHHHHHHHHHHH
Q 022161 197 FLLSAGTKGKRYSLPNSRIMIHQPLG------------G------AQGGQS-------DI-----DLQANEMLHHKANLN 246 (301)
Q Consensus 197 ~Il~aG~kgkR~a~PnS~imIHqp~~------------g------~~G~~~-------di-----~~~akel~~~k~~~~ 246 (301)
+|+++|++ |++.|++.++...... | ..|+.+ ++ +.....+..+.+.|.
T Consensus 83 ~lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~ 160 (208)
T cd07023 83 YIAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFV 160 (208)
T ss_pred HHHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999874322110 0 122211 11 222233445667788
Q ss_pred HHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccchh
Q 022161 247 GYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 294 (301)
Q Consensus 247 ~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~ 294 (301)
+.+++.||++.+++.++.+...| +++||+++||||+|.. .+++++.
T Consensus 161 ~~Va~~R~~~~~~~~~~~~~~~~-~a~~A~~~gLiD~i~~-~~~~~~~ 206 (208)
T cd07023 161 DVVAEGRGMSGERLDKLADGRVW-TGRQALELGLVDELGG-LDDAIAK 206 (208)
T ss_pred HHHHhcCCCCHHHHHHhcCCcEE-EHHHHHHcCCCcccCC-HHHHHHh
Confidence 88999999999999998888776 8999999999999984 5555543
No 23
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.86 E-value=5.1e-21 Score=195.87 Aligned_cols=169 Identities=21% Similarity=0.228 Sum_probs=136.4
Q ss_pred EEEEccccChh-------HHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhh---CCCeEEEEcCccch
Q 022161 124 IIRCGGPVEDD-------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAAS 193 (301)
Q Consensus 124 II~L~G~Idd~-------~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~---~~pV~Tvv~G~AAS 193 (301)
+|++.|+|.+. ..+.+.++|..+..++..+.|+|+||||||++.++..|+++|+.. ++||++++.|+|+|
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 89999999752 256788888888888889999999999999999999999999865 48999999999999
Q ss_pred HhHHHHhcCCCCceEecCCeEE------EeecCC------CC------CCCCC-----------cchHHHHHHHHHHHHH
Q 022161 194 MGAFLLSAGTKGKRYSLPNSRI------MIHQPL------GG------AQGGQ-----------SDIDLQANEMLHHKAN 244 (301)
Q Consensus 194 aaa~Il~aG~kgkR~a~PnS~i------mIHqp~------~g------~~G~~-----------~di~~~akel~~~k~~ 244 (301)
+||+|+++|++ |+|.|++.+ +.+... .| ..|.. .+.+.....+.+.++.
T Consensus 392 ggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~ 469 (584)
T TIGR00705 392 GGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR 469 (584)
T ss_pred HHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999976 333110 00 11221 1223344556667888
Q ss_pred HHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccchhhH
Q 022161 245 LNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVA 296 (301)
Q Consensus 245 ~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~~~ 296 (301)
|.+.+++.+|++.+++++++++.+| +++||+++||||+|.. ..+|++...
T Consensus 470 F~~~Va~~R~l~~e~v~~ia~Grv~-tg~eA~~~GLVD~ig~-~~~Ai~~a~ 519 (584)
T TIGR00705 470 FLSVVSAGRNLTPTQVDKVAQGRVW-TGEDAVSNGLVDALGG-LDEAVAKAA 519 (584)
T ss_pred HHHHHHhhCCCCHHHHHHHHhCCCc-CHHHHHHcCCcccCCC-HHHHHHHHH
Confidence 8889999999999999999998777 9999999999999975 467766544
No 24
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.86 E-value=7.4e-21 Score=166.54 Aligned_cols=151 Identities=19% Similarity=0.143 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhh---CCCeEEEEcCccchHhHHHHhcCCCCceEecC
Q 022161 135 MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLP 211 (301)
Q Consensus 135 ~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~---~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~P 211 (301)
+.+.+.+.|..++.++..+.|+|.+|||||++.....|++.++.+ ++||++++.|.|+|+|++|+++||. |+|.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence 357888899888888889999999999999999888887766554 6899999999999999999999999 99999
Q ss_pred CeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCcccc
Q 022161 212 NSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKI 291 (301)
Q Consensus 212 nS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~a 291 (301)
++.|++|....+ .+.....+..+.+.|.+.+++.+|++.+++.+++....+|+++||+++||||+|+. .+++
T Consensus 101 ~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~-~~e~ 172 (177)
T cd07014 101 STLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGS-FDDA 172 (177)
T ss_pred CCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCC-HHHH
Confidence 999999977543 11123345667788888999999999999999998888999999999999999996 5566
Q ss_pred chhh
Q 022161 292 LQPV 295 (301)
Q Consensus 292 l~~~ 295 (301)
++.|
T Consensus 173 ~~~l 176 (177)
T cd07014 173 VAKL 176 (177)
T ss_pred HHHh
Confidence 5544
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.84 E-value=3.1e-20 Score=167.57 Aligned_cols=167 Identities=21% Similarity=0.225 Sum_probs=131.3
Q ss_pred EEEEccccCh-----------hHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhC--CCeEEEEcCc
Q 022161 124 IIRCGGPVED-----------DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGL 190 (301)
Q Consensus 124 II~L~G~Idd-----------~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~--~pV~Tvv~G~ 190 (301)
+|.+.|+|.+ .+.+.+.++|..++.++..+.|+|.+|||||++.....|+++|+.++ +||++++.|.
T Consensus 4 vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~ 83 (214)
T cd07022 4 VIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGL 83 (214)
T ss_pred EEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 4566666655 45688999999999888899999999999999999999999999998 9999999999
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCCC------------C------CCCCCc-------chHH-----HHHHHHH
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLG------------G------AQGGQS-------DIDL-----QANEMLH 240 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~------------g------~~G~~~-------di~~-----~akel~~ 240 (301)
|+|+|++|+++||+ +++.|++.++...... | ..|..+ ++.. ....+..
T Consensus 84 a~s~gy~lA~~aD~--i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~ 161 (214)
T cd07022 84 AASAAYWIASAADR--IVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDA 161 (214)
T ss_pred hhhHHHHHHhcCCE--EEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998 9999999874432210 0 123221 2221 2223344
Q ss_pred HHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccchhh
Q 022161 241 HKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPV 295 (301)
Q Consensus 241 ~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~~ 295 (301)
+.+.|.+.+++.||++.+++++.+ + ..|+++||+++||||+|.. .+++++.|
T Consensus 162 ~~~~f~~~V~~~R~~~~~~~~~~~-~-~~~~~~~Al~~gLvD~i~~-~~~~~~~~ 213 (214)
T cd07022 162 LYAMFVAAVARNRGLSAAAVRATE-G-GVFRGQEAVAAGLADAVGT-LDDALAAL 213 (214)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHhh-c-CeeeHHHHHHcCCCcccCC-HHHHHHHh
Confidence 667888889999999999999888 4 4469999999999999974 66666654
No 26
>PRK10949 protease 4; Provisional
Probab=99.84 E-value=4.5e-20 Score=189.79 Aligned_cols=171 Identities=20% Similarity=0.227 Sum_probs=134.7
Q ss_pred cEEEEccccChh-------HHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhh---CCCeEEEEcCccc
Q 022161 123 RIIRCGGPVEDD-------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAA 192 (301)
Q Consensus 123 rII~L~G~Idd~-------~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~---~~pV~Tvv~G~AA 192 (301)
-||++.|.|.+. ..+.+.++|..+..++..|.|+|+||||||++.++..|+++|+.. ++||++++.++||
T Consensus 329 avi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aA 408 (618)
T PRK10949 329 AVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408 (618)
T ss_pred EEEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCc
Confidence 379999999753 256789999999999999999999999999999999999999765 4799999999999
Q ss_pred hHhHHHHhcCCCCceEecCCeEEEe------ecCC------CC------CCCCCcc------h-----HHHHHHHHHHHH
Q 022161 193 SMGAFLLSAGTKGKRYSLPNSRIMI------HQPL------GG------AQGGQSD------I-----DLQANEMLHHKA 243 (301)
Q Consensus 193 Saaa~Il~aG~kgkR~a~PnS~imI------Hqp~------~g------~~G~~~d------i-----~~~akel~~~k~ 243 (301)
|+||||+++|++ +++.|++.++. |.-. .| ..|...+ + +.....+...++
T Consensus 409 SggY~iA~aad~--I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~ 486 (618)
T PRK10949 409 SGGYWISTPANY--IVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYK 486 (618)
T ss_pred cHHHHHHHhcCE--EEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 99999876532 2110 01 1122211 1 112234455678
Q ss_pred HHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccchhhHh
Q 022161 244 NLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVAA 297 (301)
Q Consensus 244 ~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~~~~ 297 (301)
.|.+.+++.||++.+++++..++..| |++||+++||||+++. .++|++.+..
T Consensus 487 ~F~~~Va~~R~~~~~~v~~ia~Grv~-tg~~A~~~GLVD~lG~-~~~ai~~a~~ 538 (618)
T PRK10949 487 RFITLVADSRHKTPEQIDKIAQGHVW-TGQDAKANGLVDSLGD-FDDAVAKAAE 538 (618)
T ss_pred HHHHHHHhhCCCCHHHHHHHhcCCcc-cHHHHHHcCCCccCCC-HHHHHHHHHH
Confidence 89999999999999999998887665 9999999999999975 6677765543
No 27
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.82 E-value=1.7e-19 Score=162.57 Aligned_cols=168 Identities=19% Similarity=0.153 Sum_probs=131.6
Q ss_pred EEEEccccChhH-------HHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHh---hCCCeEEEEcCccch
Q 022161 124 IIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH---IRPDVSTVCVGLAAS 193 (301)
Q Consensus 124 II~L~G~Idd~~-------a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~---~~~pV~Tvv~G~AAS 193 (301)
||.+.|+|.+.. ...+.+.|..+..++..+.|+|.+|||||++.+...|++.|+. .++||++++.|.|+|
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s 83 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS 83 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 678888887533 3678899999988888999999999999999999999886654 568999999999999
Q ss_pred HhHHHHhcCCCCceEecCCeEEEeecCC------------CCC------C-CC-----Ccch-----HHHHHHHHHHHHH
Q 022161 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPL------------GGA------Q-GG-----QSDI-----DLQANEMLHHKAN 244 (301)
Q Consensus 194 aaa~Il~aG~kgkR~a~PnS~imIHqp~------------~g~------~-G~-----~~di-----~~~akel~~~k~~ 244 (301)
+|++|+++||+ ++|.|++.++..... .|. . |. ..++ +.....+..+.+.
T Consensus 84 ~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~ 161 (211)
T cd07019 84 GGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKR 161 (211)
T ss_pred HHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999987543321 010 1 21 1111 1122345567788
Q ss_pred HHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccchhh
Q 022161 245 LNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPV 295 (301)
Q Consensus 245 ~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~~ 295 (301)
|.+.+++.++++++++++..++ .+|+++||+++||||+|.+ .+++++.+
T Consensus 162 f~~~Va~~R~~~~~~l~~~~~~-~~~~~~~A~~~GLvD~i~~-~~~~~~~~ 210 (211)
T cd07019 162 FITLVADARHSTPEQIDKIAQG-HVWTGQDAKANGLVDSLGD-FDDAVAKA 210 (211)
T ss_pred HHHHHHhhCCCCHHHHHHhcCC-cEEeHHHHHHcCCcccCCC-HHHHHHHh
Confidence 8899999999999999987765 5679999999999999885 66666654
No 28
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.79 E-value=1.4e-18 Score=166.78 Aligned_cols=169 Identities=13% Similarity=0.206 Sum_probs=117.9
Q ss_pred cEEEEccccChhHHHHHHHHHHhh-hhcCCCCceEEEEcCCCCcHHHHHHHHHHHH---hhCCCeEEEEcCccchHhHHH
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYL-DAVDPNKDIIMYLNSPGGSVTAGMAIFDTIR---HIRPDVSTVCVGLAASMGAFL 198 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L-~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~---~~~~pV~Tvv~G~AASaaa~I 198 (301)
-+|.+.|.|+......+.+.+..+ +...+.+.|+|+||||||+|.+...++..|+ ..++||++++.++|||+||||
T Consensus 93 ~VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~i 172 (330)
T PRK11778 93 FVLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMM 172 (330)
T ss_pred EEEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHH
Confidence 368899999976654444444332 2222347899999999999988666665554 445799999999999999999
Q ss_pred HhcCCCCceEecCCeEEEeecCCC------------C------CCCCCcch------------HHHHHHHHHHHHHHHHH
Q 022161 199 LSAGTKGKRYSLPNSRIMIHQPLG------------G------AQGGQSDI------------DLQANEMLHHKANLNGY 248 (301)
Q Consensus 199 l~aG~kgkR~a~PnS~imIHqp~~------------g------~~G~~~di------------~~~akel~~~k~~~~~i 248 (301)
+|+|++ +++.|.+.++...... | ..|...+. +....++....+.|.+.
T Consensus 173 AsaAD~--I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~ 250 (330)
T PRK11778 173 ACVADK--IIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDF 250 (330)
T ss_pred HHhCCE--EEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999876543211 0 12332211 22233455567788888
Q ss_pred HHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccchhhHh
Q 022161 249 LSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVAA 297 (301)
Q Consensus 249 ~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~~~~ 297 (301)
++++++ ...+++..++..| +++||+++||||+|.+ .++++..+..
T Consensus 251 Va~~R~--~l~~~~va~G~v~-~g~~Al~~GLVD~Ig~-~dd~i~~~~~ 295 (330)
T PRK11778 251 VQRYRP--QLDIDKVATGEHW-YGQQALELGLVDEIQT-SDDYLLELMK 295 (330)
T ss_pred HHhcCC--cCCHHHHHhCCCc-CHHHHHHCCCCCcCCC-HHHHHHHHHh
Confidence 898875 2334455566565 9999999999999985 6677665543
No 29
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.78 E-value=1.9e-18 Score=156.85 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=130.0
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhh---CCCeEEEEcCccchHhHHHHhcCCC
Q 022161 128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTK 204 (301)
Q Consensus 128 ~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~---~~pV~Tvv~G~AASaaa~Il~aG~k 204 (301)
.+..+..+...++.+|..+..++..+.|+|.+|||||++.+...|++.|+.. ++||++++.+ |+|+||+|+++|++
T Consensus 23 ~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~ 101 (222)
T cd07018 23 GGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE 101 (222)
T ss_pred cCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE
Confidence 3444566778899999999988889999999999999999999999999765 5899999987 99999999999999
Q ss_pred CceEecCCeEEEeecCCCC------------------CCCCCc---------chHHHH-----HHHHHHHHHHHHHHHHh
Q 022161 205 GKRYSLPNSRIMIHQPLGG------------------AQGGQS---------DIDLQA-----NEMLHHKANLNGYLSYH 252 (301)
Q Consensus 205 gkR~a~PnS~imIHqp~~g------------------~~G~~~---------di~~~a-----kel~~~k~~~~~i~A~~ 252 (301)
++|.|++.+++...... ..|..+ ++.... ..+..+.+.|.+.+++.
T Consensus 102 --I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~ 179 (222)
T cd07018 102 --IYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAAS 179 (222)
T ss_pred --EEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988754211 012221 122222 22334677788889999
Q ss_pred hCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccchhh
Q 022161 253 TGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPV 295 (301)
Q Consensus 253 tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~~ 295 (301)
+|++.++++++.++..| ++++|++.||||+|. +.+++++.|
T Consensus 180 R~~~~~~~~~~~~~~~~-~~~~A~~~GLvD~i~-~~~e~~~~l 220 (222)
T cd07018 180 RGLSPDALEALIDLGGD-SAEEALEAGLVDGLA-YRDELEARL 220 (222)
T ss_pred cCCCHHHHHHHHHcCCc-HHHHHHHCCCCCcCC-cHHHHHHHH
Confidence 99999999999886555 999999999999998 577777665
No 30
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7e-18 Score=165.59 Aligned_cols=168 Identities=20% Similarity=0.265 Sum_probs=142.2
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEc---CccchHhHHHH
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLL 199 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~---G~AASaaa~Il 199 (301)
.+|.++|+|++.+++.+.+.|..++++ ....|+|.+|+|||-++++..|.+.+..++.||+.++. ++|+|+|+||+
T Consensus 29 ~vi~i~g~I~~~s~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~ 107 (436)
T COG1030 29 YVIEIDGAIDPASADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYIL 107 (436)
T ss_pred EEEEecCccCHHHHHHHHHHHHHHHhC-CCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHH
Confidence 478999999999999999999887654 46799999999999999999999999999999888875 58999999999
Q ss_pred hcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcC
Q 022161 200 SAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYG 279 (301)
Q Consensus 200 ~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~G 279 (301)
++++. .+|.|++.++-.+|..+. |+..+.+. -+..+.+.+. -+|+.+|++.+..+++.+++.-++++||.++|
T Consensus 108 m~~hi--aaMAPgT~iGaa~Pi~~~-g~~~~~~~---~~n~~~ay~~-~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~ 180 (436)
T COG1030 108 MATHI--AAMAPGTNIGAATPIAGG-GTSAKEAN---TTNAAVAYIR-SLAEERGRNPTWAERFVTENLSLTAEEALRQG 180 (436)
T ss_pred HhcCh--hhhCCCCcccccceecCC-CCCccchh---hHHHHHHHHH-HHHHHcCCChHHHHHHhhhccCCChhHHHhcC
Confidence 99999 999999999999996543 33322222 1222223333 35899999999999999999999999999999
Q ss_pred CceeecCCccccchhhHhh
Q 022161 280 LIDGVVMNPHKILQPVAAA 298 (301)
Q Consensus 280 LID~I~~~~~~al~~~~~~ 298 (301)
+||-|..+..|+|+.+...
T Consensus 181 vid~iA~~~~ell~~~~g~ 199 (436)
T COG1030 181 VIDLIARDLNELLKKLDGR 199 (436)
T ss_pred ccccccCCHHHHHHHccCC
Confidence 9999999999999887654
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.60 E-value=2.4e-14 Score=133.79 Aligned_cols=147 Identities=20% Similarity=0.234 Sum_probs=109.9
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccchHhHHHHhcCCCCce
Q 022161 128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKR 207 (301)
Q Consensus 128 ~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR 207 (301)
...|+.+.++.|.+.+... ++.++|.|.||||||.+.++..|.+.|+.+..+|+++|...|.|+|++|+++|++ +
T Consensus 69 ~~~I~i~dse~v~raI~~~---~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe--I 143 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE--I 143 (285)
T ss_pred ceeEcHhhHHHHHHHHHhc---CCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe--E
Confidence 3458888888888887543 4567899999999999999999999999999999999999999999999999999 9
Q ss_pred EecCCeEEEeecCCCCCCC--------------CCcchH-----HHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhh----
Q 022161 208 YSLPNSRIMIHQPLGGAQG--------------GQSDID-----LQANEMLHHKANLNGYLSYHTGQTLEKINEDT---- 264 (301)
Q Consensus 208 ~a~PnS~imIHqp~~g~~G--------------~~~di~-----~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~---- 264 (301)
+|.|+|.++--.|..+..- ..+|.. ...|.+.++++...+++.. +++.++.++..
T Consensus 144 vM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~--~~~~eka~~ia~~L~ 221 (285)
T PF01972_consen 144 VMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKD--KMDEEKAEEIAEKLS 221 (285)
T ss_pred EECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHhc
Confidence 9999999997777543211 111110 1123334444545555543 45566555442
Q ss_pred ----cCCcccCHHHHHHcCCc
Q 022161 265 ----DRDFFMSAEEAKDYGLI 281 (301)
Q Consensus 265 ----~rd~~lTa~EA~e~GLI 281 (301)
..|+-+|.+||+++||=
T Consensus 222 ~g~~tHdypi~~eea~~lGL~ 242 (285)
T PF01972_consen 222 SGKWTHDYPITVEEAKELGLP 242 (285)
T ss_pred CCCCCCCCCCCHHHHHHcCCC
Confidence 35778999999999983
No 32
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.44 E-value=1e-12 Score=134.94 Aligned_cols=160 Identities=12% Similarity=0.002 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHhhhhcCCCCceEEEEcC-CCCcHHHHHHHHHHHHhhC---CCeEEEEcCccchHhHHHHhcCCCCceE
Q 022161 133 DDMANIIVAQLLYLDAVDPNKDIIMYLNS-PGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAASMGAFLLSAGTKGKRY 208 (301)
Q Consensus 133 d~~a~~iiaqL~~L~~~d~~k~I~L~INS-PGGsV~ag~aIyd~m~~~~---~pV~Tvv~G~AASaaa~Il~aG~kgkR~ 208 (301)
+.....++.+|..+..++..+.|+|.||+ |||.+....+|+++|+..+ +||+++..+ ++|++|||++++++ ++
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~AD~--I~ 151 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASFADE--II 151 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhhCCE--EE
Confidence 34567899999999999999999999996 6788888899999998764 799998765 57999999999999 99
Q ss_pred ecCCeEEEeecCCCC------------------CCCCC---------cchHHHHH-----HHHHHHHHHHHHHHHhhCCC
Q 022161 209 SLPNSRIMIHQPLGG------------------AQGGQ---------SDIDLQAN-----EMLHHKANLNGYLSYHTGQT 256 (301)
Q Consensus 209 a~PnS~imIHqp~~g------------------~~G~~---------~di~~~ak-----el~~~k~~~~~i~A~~tG~s 256 (301)
+.|.+.++++..... ..|.. .++....+ .+..+.+.+.+.+++.|+++
T Consensus 152 ~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~ 231 (584)
T TIGR00705 152 LNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIP 231 (584)
T ss_pred ECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999877643211 01221 13322222 33446677888899999999
Q ss_pred HHHHHhhhcCCcc-------cCHHHHHHcCCceeecCCccccchhhH
Q 022161 257 LEKINEDTDRDFF-------MSAEEAKDYGLIDGVVMNPHKILQPVA 296 (301)
Q Consensus 257 ~e~I~~~~~rd~~-------lTa~EA~e~GLID~I~~~~~~al~~~~ 296 (301)
.+++.+..++-.| +++++|++.||||+|.. .+++.+.+.
T Consensus 232 ~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~-~de~~~~l~ 277 (584)
T TIGR00705 232 VQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCS-YAEAGKALK 277 (584)
T ss_pred HHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCC-HHHHHHHHH
Confidence 9999988876554 38999999999999984 556555544
No 33
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.42 E-value=5.4e-13 Score=114.81 Aligned_cols=120 Identities=20% Similarity=0.205 Sum_probs=85.4
Q ss_pred HHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCC------------C------CCCCCc-------c
Q 022161 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLG------------G------AQGGQS-------D 230 (301)
Q Consensus 176 m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~------------g------~~G~~~-------d 230 (301)
.+..++||++++.++|+|+||+|+++|++ +++.|.+.++...... | ..|+.. +
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 45678999999999999999999999999 9999999886544321 1 123322 2
Q ss_pred hHHH-----HHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccchhhHhhc
Q 022161 231 IDLQ-----ANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVAAAA 299 (301)
Q Consensus 231 i~~~-----akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~~~~~~ 299 (301)
+... .+.+..+.+.|.+.+++.+|++.+++++++++ ..|+++||+++||||+|. ..+++++.+....
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~-~~~~~~~~l~~~~ 151 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIG-TFDEAIARLAKLA 151 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEET-SHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcC-CHHHHHHHHHHHc
Confidence 2222 23334466778888999999999999999888 556999999999999998 5778888876543
No 34
>PRK10949 protease 4; Provisional
Probab=99.33 E-value=1.3e-11 Score=127.64 Aligned_cols=160 Identities=18% Similarity=0.102 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHH-HHHHHHHHhhC---CCeEEEEcCccchHhHHHHhcCCCCceE
Q 022161 133 DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG-MAIFDTIRHIR---PDVSTVCVGLAASMGAFLLSAGTKGKRY 208 (301)
Q Consensus 133 d~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag-~aIyd~m~~~~---~pV~Tvv~G~AASaaa~Il~aG~kgkR~ 208 (301)
+-....++.+|..+..++..+.|+|+||+|||...+. ..|+++|+..+ +||+++ ...+++.+|||++++|+ ++
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~ 170 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IY 170 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EE
Confidence 3456688999999999999999999999998876655 78999887764 789886 56678999999999999 99
Q ss_pred ecCCeEEEeecCCCC------------------CCCCC---------cchHHHHHH-----HHHHHHHHHHHHHHhhCCC
Q 022161 209 SLPNSRIMIHQPLGG------------------AQGGQ---------SDIDLQANE-----MLHHKANLNGYLSYHTGQT 256 (301)
Q Consensus 209 a~PnS~imIHqp~~g------------------~~G~~---------~di~~~ake-----l~~~k~~~~~i~A~~tG~s 256 (301)
+.|.+.++++..... ..|.. .++....+| +..+.+.+.+.+++.++++
T Consensus 171 l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~ 250 (618)
T PRK10949 171 LSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIT 250 (618)
T ss_pred ECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999887754321 01221 233333333 3345677888889999999
Q ss_pred HHHHHhhhcC-------CcccCHHHHHHcCCceeecCCccccchhhH
Q 022161 257 LEKINEDTDR-------DFFMSAEEAKDYGLIDGVVMNPHKILQPVA 296 (301)
Q Consensus 257 ~e~I~~~~~r-------d~~lTa~EA~e~GLID~I~~~~~~al~~~~ 296 (301)
.+++....++ .--+++++|++.||||+|.. .+++.+.+.
T Consensus 251 ~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~-~de~~~~l~ 296 (618)
T PRK10949 251 PQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALAS-SAEIEKALT 296 (618)
T ss_pred HHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCC-HHHHHHHHH
Confidence 9998643322 11259999999999999985 556555444
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.99 E-value=9.5e-09 Score=89.89 Aligned_cols=139 Identities=19% Similarity=0.126 Sum_probs=97.2
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHH-----------------HHHHHHHHHHhhCCCeEEEEc
Q 022161 130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT-----------------AGMAIFDTIRHIRPDVSTVCV 188 (301)
Q Consensus 130 ~Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~-----------------ag~aIyd~m~~~~~pV~Tvv~ 188 (301)
.++..+.+.+.+.|..++.++..+.|+|.-+ |.|+++. ....++..|..+++||++.+.
T Consensus 22 ~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~ 101 (195)
T cd06558 22 ALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVN 101 (195)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 3577888999999998887666776666655 5555543 234555667778899999999
Q ss_pred CccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 022161 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268 (301)
Q Consensus 189 G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~ 268 (301)
|.|.++|+.++++||. |++.++++|.+.....|.. .+... . ..+.+..| .....+++-...
T Consensus 102 G~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~~---p~~g~----~--------~~l~~~~g--~~~a~~~~l~g~ 162 (195)
T cd06558 102 GAALGGGLELALACDI--RIAAEDAKFGLPEVKLGLV---PGGGG----T--------QRLPRLVG--PARARELLLTGR 162 (195)
T ss_pred CeeecHHHHHHHhCCE--EEecCCCEEechhhhcCCC---CCCcH----H--------HHHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 9999999998866544321 00000 0 11122222 223333443356
Q ss_pred ccCHHHHHHcCCceeecCC
Q 022161 269 FMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 269 ~lTa~EA~e~GLID~I~~~ 287 (301)
.++++||++.||||+++..
T Consensus 163 ~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 163 RISAEEALELGLVDEVVPD 181 (195)
T ss_pred ccCHHHHHHcCCCCeecCh
Confidence 6799999999999999975
No 36
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.75 E-value=3e-07 Score=83.74 Aligned_cols=150 Identities=25% Similarity=0.255 Sum_probs=97.7
Q ss_pred EEEccc----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHH---------------HHHHHHHHhhCC
Q 022161 125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG---------------MAIFDTIRHIRP 181 (301)
Q Consensus 125 I~L~G~----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag---------------~aIyd~m~~~~~ 181 (301)
|.++.+ ++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..+++.|..+++
T Consensus 21 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~k 100 (222)
T PRK05869 21 LLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPK 100 (222)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCC
Confidence 555555 778888889999988887666666555311 233443221 235667788899
Q ss_pred CeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Q 022161 182 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKIN 261 (301)
Q Consensus 182 pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~ 261 (301)
||++.+.|.|..+|..|+++||. |++.++++|.+-....|. ..+..- .. .+.+..| .....
T Consensus 101 PvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~----~~--------~l~~~ig--~~~a~ 161 (222)
T PRK05869 101 PTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEILAGL---APSGDG----MA--------RLTRAAG--PSRAK 161 (222)
T ss_pred CEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchhccCC---CCCccH----HH--------HHHHHhC--HHHHH
Confidence 99999999999999999999999 999999988764433221 111100 00 0112222 22333
Q ss_pred hhhcCCcccCHHHHHHcCCceeecCCccccchh
Q 022161 262 EDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 294 (301)
Q Consensus 262 ~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~ 294 (301)
+++-...+++++||+++||||+|+. ..+.++.
T Consensus 162 ~l~ltg~~~~a~eA~~~Glv~~vv~-~~~l~~~ 193 (222)
T PRK05869 162 ELVFSGRFFDAEEALALGLIDEMVA-PDDVYDA 193 (222)
T ss_pred HHHHcCCCcCHHHHHHCCCCCEeeC-chHHHHH
Confidence 4443345789999999999999985 4444443
No 37
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.74 E-value=2.2e-07 Score=85.74 Aligned_cols=137 Identities=20% Similarity=0.160 Sum_probs=91.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEE----EcCCCCcHHH--------------HHHHHHHHHhhCCCeEEEEcCccc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTA--------------GMAIFDTIRHIRPDVSTVCVGLAA 192 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~----INSPGGsV~a--------------g~aIyd~m~~~~~pV~Tvv~G~AA 192 (301)
++.++.+.+.+.|..++.++..+.|+|. .=|.|+++.. ...+++.|..+++||++.+.|.|.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~ 108 (259)
T PRK06688 29 LTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAV 108 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 7888888999998888776656666654 1244444321 234566777888999999999999
Q ss_pred hHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCH
Q 022161 193 SMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSA 272 (301)
Q Consensus 193 Saaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa 272 (301)
++|..|+++||. |++.++++|.+.....|.. .+..-. . .+.+..|. ....+++-....+++
T Consensus 109 GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~---p~~g~~----~--------~l~~~~G~--~~a~~l~l~g~~~~a 169 (259)
T PRK06688 109 GVGVSLALACDL--VYASESAKFSLPFAKLGLC---PDAGGS----A--------LLPRLIGR--ARAAEMLLLGEPLSA 169 (259)
T ss_pred cHHHHHHHhCCE--EEecCCCEecCchhhcCCC---CCcchh----h--------HHHHHhhH--HHHHHHHHhCCccCH
Confidence 999999999999 9999999998755433321 111000 0 01111111 122222222345799
Q ss_pred HHHHHcCCceeecC
Q 022161 273 EEAKDYGLIDGVVM 286 (301)
Q Consensus 273 ~EA~e~GLID~I~~ 286 (301)
+||+++||||+|+.
T Consensus 170 ~eA~~~Glv~~v~~ 183 (259)
T PRK06688 170 EEALRIGLVNRVVP 183 (259)
T ss_pred HHHHHcCCcceecC
Confidence 99999999999986
No 38
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.72 E-value=3.3e-07 Score=85.83 Aligned_cols=139 Identities=21% Similarity=0.227 Sum_probs=91.2
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHH-------------------HHHHHHHHhhCCCeEEEE
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------MAIFDTIRHIRPDVSTVC 187 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag-------------------~aIyd~m~~~~~pV~Tvv 187 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++... ..+++.|..+++||++.+
T Consensus 41 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 120 (277)
T PRK08258 41 LTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAV 120 (277)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 778888888888888776555555544211 334444321 235667778899999999
Q ss_pred cCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCC
Q 022161 188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRD 267 (301)
Q Consensus 188 ~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd 267 (301)
.|.|..+|.-|+++||. |++.++++|.+.....|... .+..- . ..+.+..|. ....+++-..
T Consensus 121 ~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p--~~~g~----~--------~~l~~~vG~--~~a~~l~ltg 182 (277)
T PRK08258 121 DGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGLAG--ADMGA----C--------ALLPRIIGQ--GRASELLYTG 182 (277)
T ss_pred CCeeehHHHHHHHhCCE--EEecCCCEEeccccccCcCC--CCchH----H--------HHHHHHhCH--HHHHHHHHcC
Confidence 99999999999999999 99999999987655433220 11110 0 011111122 2233333333
Q ss_pred cccCHHHHHHcCCceeecCC
Q 022161 268 FFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 268 ~~lTa~EA~e~GLID~I~~~ 287 (301)
..++++||+++||||+|+..
T Consensus 183 ~~~~a~eA~~~Glv~~vv~~ 202 (277)
T PRK08258 183 RSMSAEEGERWGFFNRLVEP 202 (277)
T ss_pred CCCCHHHHHHcCCCcEecCH
Confidence 56799999999999999863
No 39
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=2.7e-07 Score=85.50 Aligned_cols=141 Identities=14% Similarity=0.148 Sum_probs=95.5
Q ss_pred EEEEccc----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHH-----------------HHHHHHHHh
Q 022161 124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-----------------MAIFDTIRH 178 (301)
Q Consensus 124 II~L~G~----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag-----------------~aIyd~m~~ 178 (301)
+|.|+.| ++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..+++.|..
T Consensus 16 ~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (257)
T PRK06495 16 VVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRE 95 (257)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHh
Confidence 3566665 788888899999888877665665555411 233343221 234556777
Q ss_pred hCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 022161 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 258 (301)
Q Consensus 179 ~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e 258 (301)
+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|..|.. . .+.+..| ..
T Consensus 96 ~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~---~---------------~l~~~~g--~~ 153 (257)
T PRK06495 96 CAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAGGG---K---------------HAMRLFG--HS 153 (257)
T ss_pred CCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCccccH---H---------------HHHHHhC--HH
Confidence 88999999999999999999999999 9999999987654443332210 0 0112222 23
Q ss_pred HHHhhhcCCcccCHHHHHHcCCceeecC
Q 022161 259 KINEDTDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 259 ~I~~~~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
...+++-....++++||+++||||+|+.
T Consensus 154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~ 181 (257)
T PRK06495 154 LTRRMMLTGYRVPAAELYRRGVIEACLP 181 (257)
T ss_pred HHHHHHHcCCeeCHHHHHHcCCcceecC
Confidence 3444443445679999999999999986
No 40
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.69 E-value=3.7e-07 Score=84.73 Aligned_cols=149 Identities=21% Similarity=0.135 Sum_probs=94.5
Q ss_pred EEEccc----cChhHHHHHHHHHHhhhhcCCCCceEEEE-----cCCCCcHHH--------------HHHHHHHHHhhCC
Q 022161 125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA--------------GMAIFDTIRHIRP 181 (301)
Q Consensus 125 I~L~G~----Idd~~a~~iiaqL~~L~~~d~~k~I~L~I-----NSPGGsV~a--------------g~aIyd~m~~~~~ 181 (301)
|.|+-| ++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...++..|..+++
T Consensus 16 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 95 (261)
T PRK03580 16 ITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDK 95 (261)
T ss_pred EEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCC
Confidence 455554 67788888888888877665555555531 144455432 1234566778889
Q ss_pred CeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Q 022161 182 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKIN 261 (301)
Q Consensus 182 pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~ 261 (301)
||++.+.|.|..+|.-|+++||. |++.++++|.+-....| -..+..-. . .+.+.-| .....
T Consensus 96 PvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G---~~p~~g~~----~--------~l~~~vg--~~~a~ 156 (261)
T PRK03580 96 PVIAAVNGYAFGGGFELALAADF--IVCADNASFALPEAKLG---IVPDSGGV----L--------RLPKRLP--PAIAN 156 (261)
T ss_pred CEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeCcccccC---cCCCccHH----H--------HHHHHhC--HHHHH
Confidence 99999999999999999999999 99999999865332222 11111100 0 0111112 22333
Q ss_pred hhhcCCcccCHHHHHHcCCceeecCCccccch
Q 022161 262 EDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 262 ~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~ 293 (301)
+++-....++++||+++||||+|+. ..+.++
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~-~~~l~~ 187 (261)
T PRK03580 157 EMVMTGRRMDAEEALRWGIVNRVVP-QAELMD 187 (261)
T ss_pred HHHHhCCccCHHHHHHcCCCcEecC-HhHHHH
Confidence 3332334679999999999999986 344433
No 41
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.68 E-value=5.7e-07 Score=81.54 Aligned_cols=158 Identities=19% Similarity=0.151 Sum_probs=105.8
Q ss_pred hcCCcE--EEEccccChhHHHHHHHHHHhhhhcCCCCceE-EEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccchHh
Q 022161 119 LFQHRI--IRCGGPVEDDMANIIVAQLLYLDAVDPNKDII-MYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMG 195 (301)
Q Consensus 119 L~~~rI--I~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~-L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AASaa 195 (301)
.+..|. +.+.+++-+.-+......+. .......+. +-+|||||+|..++++-..|+..+-++..--..+|+|++
T Consensus 71 ~~dgr~l~VvVse~~a~~da~sal~~li---r~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaC 147 (245)
T COG3904 71 TLDGRQLPVVVSEPGANVDAASALGRLI---RKAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASAC 147 (245)
T ss_pred hccCceeeEEEcCCCCCccHHHHHHHHH---hccCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccc
Confidence 345565 44566655443333333332 223333344 679999999999999999999998887777778999999
Q ss_pred HHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHH-HHHHHHHHHHHhhCCCHHHHHhhhc----CCccc
Q 022161 196 AFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLH-HKANLNGYLSYHTGQTLEKINEDTD----RDFFM 270 (301)
Q Consensus 196 a~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~-~k~~~~~i~A~~tG~s~e~I~~~~~----rd~~l 270 (301)
.+++++|.. |++.+.+.|++||+.....-. .-...+++...+ ....+..|+ ...|..+.-+..+.. +-+++
T Consensus 148 pl~fagGvr--Rvve~~ayiGVHq~~~~g~~~-r~~~~~a~Sanq~~tar~a~yl-rEMgigpgLlq~ml~tpp~dir~l 223 (245)
T COG3904 148 PLMFAGGVR--RVVEDFAYIGVHQITTTGRRE-RIVNGKAKSANQKVTARLAAYL-REMGIGPGLLQMMLATPPSDIRQL 223 (245)
T ss_pred hhhhhccee--eeecccceeeeeeccccCCcc-ccCcHhhhhhhhhhHHHHHHHH-HHcCCCHHHHHHHhcCChHhhhhh
Confidence 999999998 999999999999997542210 011112222222 223344443 557888766655543 34789
Q ss_pred CHHHHHHcCCcee
Q 022161 271 SAEEAKDYGLIDG 283 (301)
Q Consensus 271 Ta~EA~e~GLID~ 283 (301)
+.+|..+|.|+.+
T Consensus 224 ~~kem~~~~L~t~ 236 (245)
T COG3904 224 GLKEMTAMKLVTS 236 (245)
T ss_pred hHHHHhhhccccc
Confidence 9999999998764
No 42
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.67 E-value=3.4e-07 Score=85.11 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=89.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc------CCCCcHHHH--------------HHHHHHHHhhCCCeEEEEcCc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTAG--------------MAIFDTIRHIRPDVSTVCVGL 190 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN------SPGGsV~ag--------------~aIyd~m~~~~~pV~Tvv~G~ 190 (301)
++.++.+.+.+.+..++.++ .+.|+|.=+ |.|+++... ..+++.|..+++||++.+.|.
T Consensus 28 l~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~ 106 (261)
T PRK11423 28 LSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGS 106 (261)
T ss_pred CCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecE
Confidence 78888888888888777654 655554321 334444321 235566778889999999999
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
|..+|.-|+++||. |++.++++|.+-....|. .-+..- .. .+.+..| .....+++-....+
T Consensus 107 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~~~~g~----~~--------~l~~~vg--~~~a~~l~l~g~~~ 167 (261)
T PRK11423 107 VWGGAFELIMSCDL--IIAASTSTFAMTPANLGV---PYNLSG----IL--------NFTNDAG--FHIVKEMFFTASPI 167 (261)
T ss_pred EechHHHHHHhCCE--EEecCCCEecCchhhcCC---CCCccH----HH--------HHHHHhH--HHHHHHHHHcCCCc
Confidence 99999999999999 999999988754433221 111100 00 0111112 22333333334567
Q ss_pred CHHHHHHcCCceeecC
Q 022161 271 SAEEAKDYGLIDGVVM 286 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~ 286 (301)
+++||+++||||+|+.
T Consensus 168 ~a~eA~~~GLv~~vv~ 183 (261)
T PRK11423 168 TAQRALAVGILNHVVE 183 (261)
T ss_pred CHHHHHHcCCcCcccC
Confidence 9999999999999986
No 43
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=4.7e-07 Score=83.81 Aligned_cols=146 Identities=20% Similarity=0.165 Sum_probs=94.3
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEE----EcCCCCcHHHH----------------------HHH
Q 022161 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG----------------------MAI 172 (301)
Q Consensus 124 II~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~----INSPGGsV~ag----------------------~aI 172 (301)
+|.|+-+ ++.++.+.+.+.|..++.++..+.|+|. .=|.|+++... ..+
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T PRK07509 15 DVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRV 94 (262)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHH
Confidence 3555544 7888889999999888776555555552 11334443311 113
Q ss_pred HHHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 022161 173 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYH 252 (301)
Q Consensus 173 yd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~ 252 (301)
+..|+.+++||++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. .+..- . ..+.+.
T Consensus 95 ~~~~~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~ 157 (262)
T PRK07509 95 SLGWRRLPVPVIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWGLV---PDMAG----T--------VSLRGL 157 (262)
T ss_pred HHHHHhCCCCEEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccCCC---CCchH----H--------HHHHHH
Confidence 34466788999999999999999999999999 9999999988755433321 11110 0 011111
Q ss_pred hCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCc
Q 022161 253 TGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNP 288 (301)
Q Consensus 253 tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~ 288 (301)
-| .....+++-....++++||+++||||+|++..
T Consensus 158 ~g--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 191 (262)
T PRK07509 158 VR--KDVARELTYTARVFSAEEALELGLVTHVSDDP 191 (262)
T ss_pred hC--HHHHHHHHHcCCCcCHHHHHHcCChhhhhchH
Confidence 12 22334444334567999999999999998643
No 44
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.66 E-value=2.8e-07 Score=85.08 Aligned_cols=151 Identities=14% Similarity=0.046 Sum_probs=98.5
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHH------------HHHHHHHHhhCCCe
Q 022161 125 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------MAIFDTIRHIRPDV 183 (301)
Q Consensus 125 I~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag------------~aIyd~m~~~~~pV 183 (301)
|.|+.+ ++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..++..|..+++||
T Consensus 18 i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 97 (249)
T PRK07110 18 VTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPV 97 (249)
T ss_pred EEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCE
Confidence 555543 778888888888888876655565555411 344554321 24667788889999
Q ss_pred EEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhh
Q 022161 184 STVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED 263 (301)
Q Consensus 184 ~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~ 263 (301)
++.+.|.|..+|..|+++||. |++.++++|.+.....| -..+..- -. .+.+..| .....++
T Consensus 98 Iaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G---l~p~~g~--~~----------~l~~~~g--~~~a~~l 158 (249)
T PRK07110 98 IAAMQGHAIGGGLVLGLYADI--VVLSRESVYTANFMKYG---FTPGMGA--TA----------ILPEKLG--LALGQEM 158 (249)
T ss_pred EEEecCceechHHHHHHhCCE--EEEeCCCEecCchhccC---CCCCchH--HH----------HHHHHhC--HHHHHHH
Confidence 999999999999999999999 99999998865433222 1111110 00 1112222 2334444
Q ss_pred hcCCcccCHHHHHHcCCceeecCCccccchhh
Q 022161 264 TDRDFFMSAEEAKDYGLIDGVVMNPHKILQPV 295 (301)
Q Consensus 264 ~~rd~~lTa~EA~e~GLID~I~~~~~~al~~~ 295 (301)
+-...-|+++||+++||||+|+. +.+.++..
T Consensus 159 lltg~~~~a~eA~~~Glv~~vv~-~~~l~~~a 189 (249)
T PRK07110 159 LLTARYYRGAELKKRGVPFPVLP-RAEVLEKA 189 (249)
T ss_pred HHcCCccCHHHHHHcCCCeEEeC-hHHHHHHH
Confidence 43345569999999999999986 44444443
No 45
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.64 E-value=1e-06 Score=82.06 Aligned_cols=137 Identities=18% Similarity=0.097 Sum_probs=92.2
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH-------------HHHHHHHHHhhCCCeEEEEcCccch
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS 193 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a-------------g~aIyd~m~~~~~pV~Tvv~G~AAS 193 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 107 (258)
T PRK06190 28 LSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVT 107 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 788888998888888876655565555321 44555432 1345677888899999999999999
Q ss_pred HhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 022161 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAE 273 (301)
Q Consensus 194 aaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~ 273 (301)
+|.-|+++||. |++.++++|.+-....| -..+..-. ..+.+.-| .....+++-....++++
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~~G---l~p~~g~~------------~~l~r~vG--~~~a~~l~ltg~~~~a~ 168 (258)
T PRK06190 108 GGLELALACDI--LIASERARFADTHARVG---ILPGWGLS------------VRLPQKVG--IGRARRMSLTGDFLDAA 168 (258)
T ss_pred HHHHHHHhCCE--EEEeCCCEEECcccccC---cCCCccHH------------HHHHHHhC--HHHHHHHHHhCCccCHH
Confidence 99999999999 99999999875333222 11111100 01112222 23333443333457999
Q ss_pred HHHHcCCceeecC
Q 022161 274 EAKDYGLIDGVVM 286 (301)
Q Consensus 274 EA~e~GLID~I~~ 286 (301)
||+++||||+|+.
T Consensus 169 eA~~~GLv~~vv~ 181 (258)
T PRK06190 169 DALRAGLVTEVVP 181 (258)
T ss_pred HHHHcCCCeEecC
Confidence 9999999999986
No 46
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.63 E-value=6e-07 Score=83.74 Aligned_cols=149 Identities=19% Similarity=0.231 Sum_probs=93.9
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH--------------------------H
Q 022161 125 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA--------------------------G 169 (301)
Q Consensus 125 I~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a--------------------------g 169 (301)
|.|+-| ++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. .
T Consensus 19 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (272)
T PRK06142 19 VTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRL 98 (272)
T ss_pred EEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHH
Confidence 455544 788888888888887776555555554311 22344321 1
Q ss_pred HHHHHHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 022161 170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYL 249 (301)
Q Consensus 170 ~aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~ 249 (301)
..+++.|..+++||++.+.|.|..+|.-|+++||. |++.++++|.+.....|. ..+..- .. .+
T Consensus 99 ~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~----~~--------~l 161 (272)
T PRK06142 99 QAAINAVADCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLGM---VADVGS----LQ--------RL 161 (272)
T ss_pred HHHHHHHHhCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhCC---CCCchH----HH--------HH
Confidence 23445677788999999999999999999999999 999999988764433221 111110 00 01
Q ss_pred HHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccc
Q 022161 250 SYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKIL 292 (301)
Q Consensus 250 A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al 292 (301)
.+..|. ....+++-...-++++||+++||||+|+.+..+.+
T Consensus 162 ~~~~G~--~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~ 202 (272)
T PRK06142 162 PRIIGD--GHLRELALTGRDIDAAEAEKIGLVNRVYDDADALL 202 (272)
T ss_pred HHHhCH--HHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHH
Confidence 111221 22333332234469999999999999997544443
No 47
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.62 E-value=8.4e-07 Score=82.40 Aligned_cols=138 Identities=18% Similarity=0.164 Sum_probs=88.3
Q ss_pred cChhHHHHHHHHHHhhhhcCC-CCceEEEEc----CCCCcHHH--------------H-------HHHHHHHHhhCCCeE
Q 022161 131 VEDDMANIIVAQLLYLDAVDP-NKDIIMYLN----SPGGSVTA--------------G-------MAIFDTIRHIRPDVS 184 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~-~k~I~L~IN----SPGGsV~a--------------g-------~aIyd~m~~~~~pV~ 184 (301)
++.++.+.+.+.|..++.+++ .+.|+|.=. |.|+++.+ + ..++..|..+++||+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI 107 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIV 107 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 677788888888877765443 454555421 23344322 1 234566778899999
Q ss_pred EEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhh
Q 022161 185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDT 264 (301)
Q Consensus 185 Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~ 264 (301)
+.+.|.|..+|..|+++||. |++.++++|.+..+..|.. .+..- -.. +.+..| .....+++
T Consensus 108 aav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG~~---p~~g~--~~~----------l~~~vg--~~~a~~l~ 168 (266)
T PRK05981 108 TAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIGLV---PDGGS--TWL----------LPRLVG--KARAMELS 168 (266)
T ss_pred EEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcCCC---CCccH--HHH----------HHHHhH--HHHHHHHH
Confidence 99999999999999999999 9999999998665543321 11110 000 111111 12223333
Q ss_pred cCCcccCHHHHHHcCCceeecCC
Q 022161 265 DRDFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 265 ~rd~~lTa~EA~e~GLID~I~~~ 287 (301)
-....|+++||+++||||+|+..
T Consensus 169 l~g~~~~a~eA~~~Glv~~vv~~ 191 (266)
T PRK05981 169 LLGEKLPAETALQWGLVNRVVDD 191 (266)
T ss_pred HhCCCcCHHHHHHcCCceEeeCH
Confidence 23345799999999999999863
No 48
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.62 E-value=8.4e-07 Score=81.92 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=92.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHH----------------HHHHHHHHHhhCCCeEEEEcCc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVGL 190 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~a----------------g~aIyd~m~~~~~pV~Tvv~G~ 190 (301)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~ 104 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGA 104 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence 77788888888888777665555555531 133455421 1235567778899999999999
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
|..+|.-|+++||. |++.++++|.+-....|. ..+..-. . .+.+..|. ....+++-....+
T Consensus 105 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~----~--------~l~~~vG~--~~a~~l~l~g~~~ 165 (257)
T PRK07658 105 ALGGGLELAMSCHI--RFATESAKLGLPELNLGL---IPGFAGT----Q--------RLPRYVGK--AKALEMMLTSEPI 165 (257)
T ss_pred eeeHHHHHHHhCCE--EEecCCCcccCcccccCC---CCCCcHH----H--------HHHHHhCH--HHHHHHHHcCCCc
Confidence 99999999999999 999999988754332221 1111100 0 01122222 2223333334567
Q ss_pred CHHHHHHcCCceeecCCccccchh
Q 022161 271 SAEEAKDYGLIDGVVMNPHKILQP 294 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~~~~~al~~ 294 (301)
+++||+++||||+|+. ..+.++.
T Consensus 166 ~a~eA~~~Glv~~vv~-~~~l~~~ 188 (257)
T PRK07658 166 TGAEALKWGLVNGVFP-EETLLDD 188 (257)
T ss_pred CHHHHHHcCCcCeecC-hhHHHHH
Confidence 9999999999999985 4444443
No 49
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.61 E-value=1.1e-06 Score=81.39 Aligned_cols=145 Identities=16% Similarity=0.112 Sum_probs=94.3
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHH------------------HHHHHHHH
Q 022161 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------------GMAIFDTI 176 (301)
Q Consensus 124 II~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~a------------------g~aIyd~m 176 (301)
+|.|+.+ ++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...++..|
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (260)
T PRK07511 15 VLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAI 94 (260)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 3556655 77888888888888877665555555531 133444322 12345567
Q ss_pred HhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022161 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 256 (301)
Q Consensus 177 ~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s 256 (301)
..+++||++.+.|.|..+|..|+++||. |++.++++|.+.....|.. .+..-. ..+.+..|
T Consensus 95 ~~~~kpvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vg-- 155 (260)
T PRK07511 95 RAFPKPVIAAVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVKVGLT---PDGGGS------------WFLARALP-- 155 (260)
T ss_pred HcCCCCEEEEECCeeehHHHHHHHhCCE--EEeeCCCEEeccccccCcC---CCchHH------------HHHHHHhC--
Confidence 7788999999999999999999999999 9999999988644333321 111000 00111122
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCceeecCC
Q 022161 257 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 257 ~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~ 287 (301)
.....+++-....++++||+++||||+|++.
T Consensus 156 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 186 (260)
T PRK07511 156 RQLATELLLEGKPISAERLHALGVVNRLAEP 186 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCccEeeCc
Confidence 2333444433456799999999999999853
No 50
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.61 E-value=7.4e-07 Score=83.02 Aligned_cols=144 Identities=17% Similarity=0.122 Sum_probs=92.3
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHH-------------------------H
Q 022161 125 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------------M 170 (301)
Q Consensus 125 I~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag-------------------------~ 170 (301)
|.|+-| ++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++... .
T Consensus 19 itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (272)
T PRK06210 19 ITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQ 98 (272)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHH
Confidence 455544 778888888888887776554555555411 223443321 1
Q ss_pred HHHHHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 022161 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLS 250 (301)
Q Consensus 171 aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A 250 (301)
.+++.|..+++||++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. .+..... .+.
T Consensus 99 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g~~~------------~l~ 161 (272)
T PRK06210 99 TRYHFLTALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRGLI---AEHGISW------------ILP 161 (272)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcCCC---CCCchhh------------hhH
Confidence 2245677788999999999999999999999999 9999999998765543321 1110000 001
Q ss_pred HhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCC
Q 022161 251 YHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 251 ~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~ 287 (301)
+..| .....+++-....++++||+++||||+|+..
T Consensus 162 ~~ig--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 196 (272)
T PRK06210 162 RLVG--HANALDLLLSARTFYAEEALRLGLVNRVVPP 196 (272)
T ss_pred hhhC--HHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 1111 2333444333344599999999999999853
No 51
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.60 E-value=8.7e-07 Score=82.93 Aligned_cols=144 Identities=19% Similarity=0.137 Sum_probs=92.3
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHHH--------------------------
Q 022161 125 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------------- 169 (301)
Q Consensus 125 I~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~ag-------------------------- 169 (301)
|.|+-| ++.++.+.+.+.|..++.++..+.|+|.= =|-|+++...
T Consensus 21 itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (275)
T PLN02664 21 LNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFL 100 (275)
T ss_pred EEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHH
Confidence 455544 78888888888888887665555444421 1233443211
Q ss_pred HHHHHHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 022161 170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYL 249 (301)
Q Consensus 170 ~aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~ 249 (301)
..+++.|..+++||++.+.|.|..+|..|+++||. |++.++++|.+-....|. ..+... .. .+
T Consensus 101 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl---~p~~g~----~~--------~l 163 (275)
T PLN02664 101 QDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLAI---TADLGT----LQ--------RL 163 (275)
T ss_pred HHHHHHHHhCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhCC---CCCccH----HH--------HH
Confidence 12455677889999999999999999999999999 999999998764333221 111110 00 01
Q ss_pred HHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCC
Q 022161 250 SYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 250 A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~ 287 (301)
.+..|. ....+++-....|+++||+++||||+|+..
T Consensus 164 ~~~vG~--~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 164 PSIVGY--GNAMELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred HHHhCH--HHHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 111222 223333323346699999999999999864
No 52
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.60 E-value=9.8e-07 Score=81.84 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=95.0
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHH---------------HHHHHHHHHh
Q 022161 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRH 178 (301)
Q Consensus 124 II~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~a---------------g~aIyd~m~~ 178 (301)
+|.|+-| ++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.. ...+++.|..
T Consensus 19 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (256)
T PRK06143 19 TLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRH 98 (256)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHh
Confidence 3555543 788888999999988877665665555321 33444322 1234566777
Q ss_pred hCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 022161 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 258 (301)
Q Consensus 179 ~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e 258 (301)
+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|. ...... ..+.+..|. .
T Consensus 99 ~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~---p~~~~~-------------~~l~~~iG~--~ 158 (256)
T PRK06143 99 FPVPVIARIPGWCLGGGLELAAACDL--RIAAHDAQFGMPEVRVGI---PSVIHA-------------ALLPRLIGW--A 158 (256)
T ss_pred CCCCEEEEECCEEeehhHHHHHhCCE--EEecCCCEEeCCccccCC---CCccHH-------------HHHHHhcCH--H
Confidence 88999999999999999999999999 999999998763332221 111100 012222232 2
Q ss_pred HHHhhhcCCcccCHHHHHHcCCceeecC
Q 022161 259 KINEDTDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 259 ~I~~~~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
...+++-....++++||+++||||+|+.
T Consensus 159 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 186 (256)
T PRK06143 159 RTRWLLLTGETIDAAQALAWGLVDRVVP 186 (256)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCcCeecC
Confidence 3344443445679999999999999986
No 53
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.59 E-value=1.2e-06 Score=81.25 Aligned_cols=138 Identities=16% Similarity=0.085 Sum_probs=89.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHH---------------HHHHHHHHHhhCCCeEEEEcCc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL 190 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~a---------------g~aIyd~m~~~~~pV~Tvv~G~ 190 (301)
++.++.+.+.+.|..++.++..+.|+|.=. |.|+++.. ...+++.|..+++||++.+.|.
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 105 (258)
T PRK09076 26 WTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGY 105 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 778888888888888776655555555321 23444422 1234566777899999999999
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
|..+|.-|+++||. |++.++++|.+-....|. ..+..-. ..+.+..|. ....+++-....+
T Consensus 106 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~------------~~l~~~iG~--~~a~~l~l~g~~~ 166 (258)
T PRK09076 106 AMGGGLECALACDI--RIAEEQAQMALPEASVGL---LPCAGGT------------QNLPWLVGE--GWAKRMILCGERV 166 (258)
T ss_pred EecHHHHHHHhCCE--EEecCCCEeeCcccccCC---CCCccHH------------HHHHHHhCH--HHHHHHHHcCCcC
Confidence 99999999999999 999999998764333221 1111000 001112222 1222333233456
Q ss_pred CHHHHHHcCCceeecCC
Q 022161 271 SAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~~ 287 (301)
+++||+++||||+|+..
T Consensus 167 ~a~eA~~~Glv~~vv~~ 183 (258)
T PRK09076 167 DAATALRIGLVEEVVEK 183 (258)
T ss_pred CHHHHHHCCCCceecCc
Confidence 99999999999999864
No 54
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.59 E-value=1.4e-06 Score=80.56 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=91.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHH-------------HHHHHHHHHhhCCCeEEEEcCccch
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS 193 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~a-------------g~aIyd~m~~~~~pV~Tvv~G~AAS 193 (301)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 26 l~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALG 105 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeeh
Confidence 67888888888888887665555555531 134444432 1235667788899999999999999
Q ss_pred HhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 022161 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAE 273 (301)
Q Consensus 194 aaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~ 273 (301)
+|.-|+++||. |++.++++|.+.....|. ..+..-. ..+.+..| .....+++-....|+++
T Consensus 106 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~------------~~l~~~ig--~~~a~~l~l~g~~~~a~ 166 (255)
T PRK09674 106 AGCELALLCDI--VIAGENARFGLPEITLGI---MPGAGGT------------QRLIRSVG--KSLASQMVLTGESITAQ 166 (255)
T ss_pred HHHHHHHhCCE--EEecCCCEEeCchhhcCC---CCCccHH------------HHHHHHhC--HHHHHHHHHcCCccCHH
Confidence 99999999999 999999998765443332 1111100 01122223 22333444334457999
Q ss_pred HHHHcCCceeecCC
Q 022161 274 EAKDYGLIDGVVMN 287 (301)
Q Consensus 274 EA~e~GLID~I~~~ 287 (301)
||+++||||+|+..
T Consensus 167 eA~~~Glv~~vv~~ 180 (255)
T PRK09674 167 QAQQAGLVSEVFPP 180 (255)
T ss_pred HHHHcCCCcEecCh
Confidence 99999999999853
No 55
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.59 E-value=1.1e-06 Score=81.47 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=89.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE-----cCCCCcHHHH--------------HHHHHHHHhhCCCeEEEEcCcc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTAG--------------MAIFDTIRHIRPDVSTVCVGLA 191 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I-----NSPGGsV~ag--------------~aIyd~m~~~~~pV~Tvv~G~A 191 (301)
++.++.+.+.+.|..++.++..+.|+|.= =|.||++..- ..+++.|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYA 105 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 67788888888888777665555555532 1335554321 2355677788999999999999
Q ss_pred chHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccC
Q 022161 192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMS 271 (301)
Q Consensus 192 ASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lT 271 (301)
..+|.-|+++||. |++.++++|.+-.+..|.. ...... ..+.+..|. ....+++-....|+
T Consensus 106 ~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~--~~~~~~-------------~~l~~~vG~--~~A~~lll~g~~~~ 166 (256)
T TIGR03210 106 IGGGNVLVTICDL--TIASEKAQFGQVGPKVGSV--DPGYGT-------------ALLARVVGE--KKAREIWYLCRRYT 166 (256)
T ss_pred ehhhHHHHHhCCE--EEEeCCCEEeccccccccc--CCccHH-------------HHHHHHhCH--HHHHHHHHhCCCcC
Confidence 9999999999999 9999999987644332211 000000 011222222 22223332234579
Q ss_pred HHHHHHcCCceeecC
Q 022161 272 AEEAKDYGLIDGVVM 286 (301)
Q Consensus 272 a~EA~e~GLID~I~~ 286 (301)
++||+++||||+|+.
T Consensus 167 a~eA~~~Glv~~vv~ 181 (256)
T TIGR03210 167 AQEALAMGLVNAVVP 181 (256)
T ss_pred HHHHHHcCCceeeeC
Confidence 999999999999986
No 56
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.57 E-value=9e-07 Score=81.95 Aligned_cols=141 Identities=20% Similarity=0.231 Sum_probs=90.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEcCCC-------CcHHH---------------HHHHHHHHHhhCCCeEEEEc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GSVTA---------------GMAIFDTIRHIRPDVSTVCV 188 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPG-------GsV~a---------------g~aIyd~m~~~~~pV~Tvv~ 188 (301)
++.++...+.+.+..++.++..+.|+| .+.| +++.. ...+++.|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDDNVYAVIL--TGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEE--EcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 678888888888887776555554444 3333 33321 12356677788999999999
Q ss_pred CccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 022161 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268 (301)
Q Consensus 189 G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~ 268 (301)
|.|..+|.-|+++||. |++.++++|.+.....|. ..+..-. ..+.+..|. ....+++-...
T Consensus 106 G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~Gl---~p~~g~~------------~~l~~~vG~--~~a~~l~l~g~ 166 (260)
T PRK05809 106 GFALGGGCELSMACDI--RIASEKAKFGQPEVGLGI---TPGFGGT------------QRLARIVGP--GKAKELIYTGD 166 (260)
T ss_pred CeeecHHHHHHHhCCE--EEeeCCCEEeCcccccCC---CCCccHH------------HHHHHHhCH--HHHHHHHHhCC
Confidence 9999999999999999 999999998764433222 1111100 011122222 22233332334
Q ss_pred ccCHHHHHHcCCceeecCCccccch
Q 022161 269 FMSAEEAKDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 269 ~lTa~EA~e~GLID~I~~~~~~al~ 293 (301)
.++++||+++||||+|+. ..+.++
T Consensus 167 ~~~a~eA~~~Glv~~vv~-~~~l~~ 190 (260)
T PRK05809 167 MINAEEALRIGLVNKVVE-PEKLME 190 (260)
T ss_pred CCCHHHHHHcCCCCcccC-hHHHHH
Confidence 569999999999999986 334333
No 57
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.57 E-value=9.4e-07 Score=82.02 Aligned_cols=137 Identities=21% Similarity=0.112 Sum_probs=87.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHH----------------HHHHHHHHHhhCCCeEEEEcC
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~a----------------g~aIyd~m~~~~~pV~Tvv~G 189 (301)
++.++.+.+.+.|..++.++..+.|+|.=. |-|+++.. ...+++.|..+++||++.+.|
T Consensus 27 l~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (259)
T TIGR01929 27 FRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNG 106 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 677778888888877766554554444311 22344321 123456778889999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
.|..+|.-|+++||. |++.++++|.+-....|.. .+..-. . .+.+..| .....+++-....
T Consensus 107 ~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~---p~~~~~-~-----------~l~~~vG--~~~a~~l~l~g~~ 167 (259)
T TIGR01929 107 YAIGGGHVLHVVCDL--TIAAENARFGQTGPKVGSF---DGGYGS-S-----------YLARIVG--QKKAREIWFLCRQ 167 (259)
T ss_pred EEehHHHHHHHhCCE--EEecCCCEecCcccccccC---CCccHH-H-----------HHHHHhH--HHHHHHHHHhCCc
Confidence 999999999999999 9999999998755443321 110000 0 0111112 1122333323345
Q ss_pred cCHHHHHHcCCceeecC
Q 022161 270 MSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~ 286 (301)
++++||+++||||+|+.
T Consensus 168 ~~a~eA~~~Glv~~vv~ 184 (259)
T TIGR01929 168 YDAEQALDMGLVNTVVP 184 (259)
T ss_pred cCHHHHHHcCCcccccC
Confidence 79999999999999986
No 58
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.57 E-value=8.7e-07 Score=80.95 Aligned_cols=143 Identities=20% Similarity=0.172 Sum_probs=94.3
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEcCCC------CcH---------------HHHHHHHHHHHh
Q 022161 125 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSV---------------TAGMAIFDTIRH 178 (301)
Q Consensus 125 I~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPG------GsV---------------~ag~aIyd~m~~ 178 (301)
|.|+.+ ++.++.+.+...|..++.++..+ .+.|.+.| +++ .....++..|..
T Consensus 11 i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~ 88 (245)
T PF00378_consen 11 ITLNRPEKRNALNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLAN 88 (245)
T ss_dssp EEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchh
Confidence 445544 77888999999999988876666 33334444 333 334556778888
Q ss_pred hCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 022161 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 258 (301)
Q Consensus 179 ~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e 258 (301)
+++||++.+.|.|..+|..++++||. |++.+++.|.+.....|..-..--.. .+.+..|..
T Consensus 89 ~~kp~Iaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G~~p~~g~~~---------------~l~r~~g~~-- 149 (245)
T PF00378_consen 89 FPKPTIAAVNGHAVGGGFELALACDF--RIAAEDAKFGFPEVRLGIFPGAGGTF---------------RLPRLIGPS-- 149 (245)
T ss_dssp SSSEEEEEESSEEETHHHHHHHHSSE--EEEETTTEEETGGGGGTSSSTSTHHH---------------HHHHHHHHH--
T ss_pred hhhheeecccccccccccccccccce--EEeecccceeeeecccCccccccccc---------------ccceeeecc--
Confidence 89999999999999999999999999 99999999765443322111110010 011111111
Q ss_pred HHHhh-hcCCcccCHHHHHHcCCceeecCCcc
Q 022161 259 KINED-TDRDFFMSAEEAKDYGLIDGVVMNPH 289 (301)
Q Consensus 259 ~I~~~-~~rd~~lTa~EA~e~GLID~I~~~~~ 289 (301)
...++ +.+ ..++++||+++||||+|+....
T Consensus 150 ~a~~l~l~g-~~~~a~eA~~~Glv~~v~~~~~ 180 (245)
T PF00378_consen 150 RARELLLTG-EPISAEEALELGLVDEVVPDEE 180 (245)
T ss_dssp HHHHHHHHT-CEEEHHHHHHTTSSSEEESGGG
T ss_pred ccccccccc-ccchhHHHHhhcceeEEcCchh
Confidence 11222 333 3569999999999999987543
No 59
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.56 E-value=1.2e-06 Score=81.97 Aligned_cols=143 Identities=20% Similarity=0.095 Sum_probs=91.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE-----cCCCCcHHH----------------HHHHHHHHHhhCCCeEEEEcC
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I-----NSPGGsV~a----------------g~aIyd~m~~~~~pV~Tvv~G 189 (301)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|
T Consensus 37 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 116 (273)
T PRK07396 37 FRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAG 116 (273)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEECC
Confidence 67888888888888777665555555532 133444321 112455677888999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
.|..+|.-|+++||. |++.++++|.+-.+..|.. ....-. . .+.+..| .....+++-....
T Consensus 117 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~~~~----~--------~l~~~vG--~~~a~~l~ltg~~ 177 (273)
T PRK07396 117 YAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVGSF---DGGYGA----S--------YLARIVG--QKKAREIWFLCRQ 177 (273)
T ss_pred EEehHHHHHHHhCCE--EEeeCCcEEeccccccccc---CCchHH----H--------HHHHHhh--HHHHHHHHHhCCC
Confidence 999999999999999 9999999988644433211 110000 0 0111122 1223333333346
Q ss_pred cCHHHHHHcCCceeecCCccccch
Q 022161 270 MSAEEAKDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~~~~~al~ 293 (301)
|+++||+++||||+|+. ..+.++
T Consensus 178 ~~A~eA~~~GLv~~vv~-~~~l~~ 200 (273)
T PRK07396 178 YDAQEALDMGLVNTVVP-LADLEK 200 (273)
T ss_pred cCHHHHHHcCCcCeecC-HHHHHH
Confidence 79999999999999986 334433
No 60
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.56 E-value=1e-06 Score=81.61 Aligned_cols=138 Identities=17% Similarity=0.125 Sum_probs=89.2
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHH------------H-------HHHHHHHHhhCCCeEEE
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA------------G-------MAIFDTIRHIRPDVSTV 186 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~a------------g-------~aIyd~m~~~~~pV~Tv 186 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. . ..+++.|..+++||++.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAA 106 (260)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 778888888888888776655565555321 23344321 0 12455677788999999
Q ss_pred EcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcC
Q 022161 187 CVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDR 266 (301)
Q Consensus 187 v~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~r 266 (301)
+.|.|..+|.-|+++||. |++.++++|.+-....|. ..+..-. ..+.+..| .....+++-.
T Consensus 107 v~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl---~p~~g~~------------~~l~~~vG--~~~a~~l~l~ 167 (260)
T PRK05980 107 VNGLAFGGGCEITEAVHL--AIASERALFAKPEIRLGM---PPTFGGT------------QRLPRLAG--RKRALELLLT 167 (260)
T ss_pred EcCEEEhhhhHHhHhCCE--EEecCCCEecCcccccCC---CCCchHh------------hHHHhhcC--HHHHHHHHHc
Confidence 999999999999999999 999999998763332221 1111100 01112222 2223333333
Q ss_pred CcccCHHHHHHcCCceeecCC
Q 022161 267 DFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 267 d~~lTa~EA~e~GLID~I~~~ 287 (301)
...++++||+++||||+|+..
T Consensus 168 g~~~~a~eA~~~Glv~~vv~~ 188 (260)
T PRK05980 168 GDAFSAERALEIGLVNAVVPH 188 (260)
T ss_pred CCccCHHHHHHcCCCCcccCH
Confidence 356799999999999999863
No 61
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.56 E-value=8.5e-07 Score=81.94 Aligned_cols=139 Identities=12% Similarity=0.064 Sum_probs=91.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEE----EcCCCCcHHHH----------------HHHHHHHHhhCCCeEEEEcCc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVGL 190 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~----INSPGGsV~ag----------------~aIyd~m~~~~~pV~Tvv~G~ 190 (301)
++.++.+.+.+.|..++.++..+.|+|. .=|-|+++..- ..+++.|..+++||++.+.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~ 104 (249)
T PRK07938 25 LPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGF 104 (249)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 7778888888888877766555555553 11344554321 124456777889999999999
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
|..+|.-|+++||. |++.++++|.+-....|..|.. ..+.+..| .....+++-....+
T Consensus 105 a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g~~------------------~~l~~~vg--~~~a~~l~ltg~~~ 162 (249)
T PRK07938 105 CLGGGIGLVGNADV--IVASDDATFGLPEVDRGALGAA------------------THLQRLVP--QHLMRALFFTAATI 162 (249)
T ss_pred EeehHHHHHHhCCE--EEEeCCCEeeCccceecCchhH------------------HHHHHhcC--HHHHHHHHHhCCcC
Confidence 99999999999999 9999999987633322322110 01112222 22334443334567
Q ss_pred CHHHHHHcCCceeecCCccccc
Q 022161 271 SAEEAKDYGLIDGVVMNPHKIL 292 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~~~~~al 292 (301)
+++||+++||||+|+. +.+.+
T Consensus 163 ~a~eA~~~Glv~~vv~-~~~l~ 183 (249)
T PRK07938 163 TAAELHHFGSVEEVVP-RDQLD 183 (249)
T ss_pred CHHHHHHCCCccEEeC-HHHHH
Confidence 9999999999999986 33433
No 62
>PLN02600 enoyl-CoA hydratase
Probab=98.56 E-value=1.9e-06 Score=79.66 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=91.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHH---------------HHHHHHHHHhhCCCeEEEEcCc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL 190 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~a---------------g~aIyd~m~~~~~pV~Tvv~G~ 190 (301)
++.++.+.+.+.+..++.++..+.|+|.=. |.|+++.. ...+++.|..+++||++.+.|.
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 98 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGA 98 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence 678888888888888876655555555311 33454432 1123455667789999999999
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
|..+|.-|+++||. |++.++++|.+-.... |-..+..- .. .+.+..| .....+++-....|
T Consensus 99 a~GgG~~lala~D~--~ia~~~a~f~~pe~~~---Gl~p~~g~----~~--------~l~~~~G--~~~a~~l~ltg~~~ 159 (251)
T PLN02600 99 ALGGGLELALSCDL--RICGEEAVFGLPETGL---AIIPGAGG----TQ--------RLPRLVG--RSRAKELIFTGRRI 159 (251)
T ss_pred ecchhHHHHHhCCE--EEeeCCCEEeCccccc---CcCCCchH----HH--------HHHHHhC--HHHHHHHHHhCCcc
Confidence 99999999999999 9999999987633222 21111110 00 0111112 22233333233457
Q ss_pred CHHHHHHcCCceeecCCccccchh
Q 022161 271 SAEEAKDYGLIDGVVMNPHKILQP 294 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~~~~~al~~ 294 (301)
+++||+++||||+|+.. .+.++.
T Consensus 160 ~a~eA~~~Glv~~vv~~-~~~~~~ 182 (251)
T PLN02600 160 GAREAASMGLVNYCVPA-GEAYEK 182 (251)
T ss_pred CHHHHHHcCCCcEeeCh-hHHHHH
Confidence 99999999999999853 344433
No 63
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.56 E-value=1.2e-06 Score=81.05 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=94.1
Q ss_pred EEEccc----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH------------HHHHHHHHHhhCCCeE
Q 022161 125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------GMAIFDTIRHIRPDVS 184 (301)
Q Consensus 125 I~L~G~----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a------------g~aIyd~m~~~~~pV~ 184 (301)
|.++.+ ++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.+ ...++..|..+++||+
T Consensus 14 itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 93 (251)
T TIGR03189 14 LRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPIL 93 (251)
T ss_pred EEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 556665 788888888888888876665565555311 33444432 1234556777889999
Q ss_pred EEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhh
Q 022161 185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDT 264 (301)
Q Consensus 185 Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~ 264 (301)
+.+.|.|..+|.-|+++||- |++.++++|.+-....|.. ..... . .+.+..| .....+++
T Consensus 94 aav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~---p~~~~--~-----------~l~~~vg--~~~a~~l~ 153 (251)
T TIGR03189 94 VAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQPEIVLGVF---APAAS--C-----------LLPERMG--RVAAEDLL 153 (251)
T ss_pred EEecCeeeeHHHHHHHhCCE--EEEcCCCEEeCchhhcCCC---CCchH--H-----------HHHHHhC--HHHHHHHH
Confidence 99999999999999999999 9999999887643322221 11110 0 1122223 22334444
Q ss_pred cCCcccCHHHHHHcCCceeecCC
Q 022161 265 DRDFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 265 ~rd~~lTa~EA~e~GLID~I~~~ 287 (301)
-...-++++||+++||||+|++.
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~ 176 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAED 176 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCc
Confidence 33345799999999999999864
No 64
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.55 E-value=1.4e-06 Score=82.36 Aligned_cols=137 Identities=22% Similarity=0.156 Sum_probs=89.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHH--------------------------------HHHHH
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG--------------------------------MAIFD 174 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag--------------------------------~aIyd 174 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..+++
T Consensus 28 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (296)
T PRK08260 28 FTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTL 107 (296)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 778888888888887776655554444211 334443220 12456
Q ss_pred HHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Q 022161 175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTG 254 (301)
Q Consensus 175 ~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG 254 (301)
.|..+++||++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. .+..-. ..+.+..|
T Consensus 108 ~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~r~vG 170 (296)
T PRK08260 108 RIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRGIV---PEAASS------------WFLPRLVG 170 (296)
T ss_pred HHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcCcC---CCcchh------------hhHHHhhC
Confidence 677788999999999999999999999999 9999999998755433321 111000 00111112
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCceeecC
Q 022161 255 QTLEKINEDTDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 255 ~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
.....+++-....++++||+++||||+|+.
T Consensus 171 --~~~A~~llltg~~~~a~eA~~~GLv~~vv~ 200 (296)
T PRK08260 171 --LQTALEWVYSGRVFDAQEALDGGLVRSVHP 200 (296)
T ss_pred --HHHHHHHHHcCCccCHHHHHHCCCceeecC
Confidence 222333433334579999999999999986
No 65
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.55 E-value=1.2e-06 Score=82.47 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=91.8
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCceEEEE------cCCCCcHHHH-----------------HHHHHHHHhhCCCeEEE
Q 022161 130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYL------NSPGGSVTAG-----------------MAIFDTIRHIRPDVSTV 186 (301)
Q Consensus 130 ~Idd~~a~~iiaqL~~L~~~d~~k~I~L~I------NSPGGsV~ag-----------------~aIyd~m~~~~~pV~Tv 186 (301)
.++.++.+.+.+.|..++.++..+.|+|.= =|.|+++... ..++..|..+++||++.
T Consensus 34 al~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 113 (278)
T PLN03214 34 SMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCA 113 (278)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 377888888888888887766566555532 1334443321 11345677778999999
Q ss_pred EcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcC
Q 022161 187 CVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDR 266 (301)
Q Consensus 187 v~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~r 266 (301)
+.|.|..+|..|+++||. |++.++++|.+-....|.. ..+... ...+.+..| .....+++-.
T Consensus 114 V~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~--~p~~~~------------~~~l~~~~G--~~~a~~lllt 175 (278)
T PLN03214 114 IRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALGIP--VPKFWA------------RLFMGRVID--RKVAESLLLR 175 (278)
T ss_pred EcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhCCC--CCChhH------------HHHHHHhcC--HHHHHHHHHc
Confidence 999999999999999999 9999999987643322210 111110 011222233 3334444433
Q ss_pred CcccCHHHHHHcCCceeecCC
Q 022161 267 DFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 267 d~~lTa~EA~e~GLID~I~~~ 287 (301)
..-|+++||+++||||+|+..
T Consensus 176 g~~~~a~eA~~~Glv~~vv~~ 196 (278)
T PLN03214 176 GRLVRPAEAKQLGLIDEVVPA 196 (278)
T ss_pred CCccCHHHHHHcCCCcEecCh
Confidence 455799999999999999864
No 66
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.55 E-value=2.1e-06 Score=80.06 Aligned_cols=136 Identities=17% Similarity=0.196 Sum_probs=88.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH----------------HHHHHHHHHhhCCCeEEEEcCc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVGL 190 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a----------------g~aIyd~m~~~~~pV~Tvv~G~ 190 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. ...+++.|..+++||++.+.|.
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 114 (266)
T PRK08139 35 LSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGI 114 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECce
Confidence 678888888888887776554554444211 22344321 1124556778889999999999
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
|..+|.-|+++||. |++.++++|.+-....|... .... . . +.+..| .....+++-....+
T Consensus 115 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p---~~~~-~-~-----------l~r~vG--~~~A~~l~ltg~~~ 174 (266)
T PRK08139 115 ATAAGCQLVASCDL--AVAADTARFAVPGVNIGLFC---STPM-V-A-----------LSRNVP--RKQAMEMLLTGEFI 174 (266)
T ss_pred eeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCCCC---CccH-H-H-----------HHHHhC--HHHHHHHHHcCCcc
Confidence 99999999999999 99999999876544433221 1100 0 0 112222 22333443333456
Q ss_pred CHHHHHHcCCceeecC
Q 022161 271 SAEEAKDYGLIDGVVM 286 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~ 286 (301)
+++||+++||||+|+.
T Consensus 175 ~a~eA~~~GLv~~vv~ 190 (266)
T PRK08139 175 DAATAREWGLVNRVVP 190 (266)
T ss_pred CHHHHHHcCCccEeeC
Confidence 9999999999999986
No 67
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=1.5e-06 Score=80.16 Aligned_cols=137 Identities=16% Similarity=0.077 Sum_probs=88.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHH--------------HHHHHHHHHhhCCCeEEEEcCccc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA--------------GMAIFDTIRHIRPDVSTVCVGLAA 192 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~a--------------g~aIyd~m~~~~~pV~Tvv~G~AA 192 (301)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...++..|..+++||++.+.|.|.
T Consensus 30 l~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (251)
T PRK06023 30 ITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAI 109 (251)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCcee
Confidence 67888888888888777665555555421 133344321 123556778889999999999999
Q ss_pred hHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCH
Q 022161 193 SMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSA 272 (301)
Q Consensus 193 Saaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa 272 (301)
.+|..|+++||. |++.++++|.+.....|. ..+..-. . .+.+..| .....+++-....+++
T Consensus 110 GgG~~la~acD~--ria~~~a~f~~pe~~~Gl---~p~~g~~--~----------~l~~~~g--~~~a~~l~l~g~~~~a 170 (251)
T PRK06023 110 GIGTTIHLHCDL--TFASPRSLFRTPFVDLAL---VPEAGSS--L----------LAPRLMG--HQRAFALLALGEGFSA 170 (251)
T ss_pred cHHHHHHHhCCE--EEEeCCCEecCcccccCC---CCCchHH--H----------HHHHHHh--HHHHHHHHHhCCCCCH
Confidence 999999999999 999999999864433322 1111100 0 0111112 1222333322345799
Q ss_pred HHHHHcCCceeecC
Q 022161 273 EEAKDYGLIDGVVM 286 (301)
Q Consensus 273 ~EA~e~GLID~I~~ 286 (301)
+||+++||||+|+.
T Consensus 171 ~eA~~~Glv~~vv~ 184 (251)
T PRK06023 171 EAAQEAGLIWKIVD 184 (251)
T ss_pred HHHHHcCCcceeeC
Confidence 99999999999985
No 68
>PLN02888 enoyl-CoA hydratase
Probab=98.54 E-value=2.2e-06 Score=79.92 Aligned_cols=138 Identities=21% Similarity=0.168 Sum_probs=89.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHHH------------HHHHHHHHhhCCCeEEEEcCccchH
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG------------MAIFDTIRHIRPDVSTVCVGLAASM 194 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~ag------------~aIyd~m~~~~~pV~Tvv~G~AASa 194 (301)
++.++...+.+.|..++.++..+.|+|.= =|-|+++... ..++..|..+++||++.+.|.|..+
T Consensus 34 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~Gg 113 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITA 113 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence 77888888888888887766566555541 1233454321 2344567778899999999999999
Q ss_pred hHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHH
Q 022161 195 GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEE 274 (301)
Q Consensus 195 aa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~E 274 (301)
|..|+++||. |++.+++.|.+-....| -..+..-. ..+.+..| .....+++-....++++|
T Consensus 114 G~~lal~cD~--ria~~~a~f~~pe~~~G---l~p~~g~~------------~~l~~~vG--~~~a~~l~ltg~~~~a~e 174 (265)
T PLN02888 114 GFEIALACDI--LVASRGAKFIDTHAKFG---IFPSWGLS------------QKLSRIIG--ANRAREVSLTAMPLTAET 174 (265)
T ss_pred HHHHHHhCCE--EEecCCCEecCcccccc---CCCCccHh------------hHHHHHhC--HHHHHHHHHhCCccCHHH
Confidence 9999999999 99999998875332222 11111100 01112222 222233332234569999
Q ss_pred HHHcCCceeecCC
Q 022161 275 AKDYGLIDGVVMN 287 (301)
Q Consensus 275 A~e~GLID~I~~~ 287 (301)
|+++||||+|+..
T Consensus 175 A~~~Glv~~vv~~ 187 (265)
T PLN02888 175 AERWGLVNHVVEE 187 (265)
T ss_pred HHHcCCccEeeCh
Confidence 9999999999863
No 69
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=2.6e-06 Score=79.00 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=88.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH---------------HHHHHHHHHhhCCCeEEEEcCcc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGLA 191 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a---------------g~aIyd~m~~~~~pV~Tvv~G~A 191 (301)
++.++.+.+.+.|..++ +..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 103 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAV 103 (255)
T ss_pred CCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 67777788888877665 33454444321 23444421 12345667788999999999999
Q ss_pred chHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccC
Q 022161 192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMS 271 (301)
Q Consensus 192 ASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lT 271 (301)
..+|.-|+++||. |++.++++|.+-....| -..+..-.. .+.+..|. ....+++-....|+
T Consensus 104 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~G---l~p~~g~~~------------~l~~~iG~--~~a~~l~ltg~~~~ 164 (255)
T PRK08150 104 VGGGLELASAAHI--RVADESTYFALPEGQRG---IFVGGGGSV------------RVPRLIGV--ARMTDMMLTGRVYD 164 (255)
T ss_pred EcHHHHHHHhCCE--EEEeCCCEEeccccccC---CCCCccHHH------------HHHHHhCH--HHHHHHHHcCCcCC
Confidence 9999999999999 99999998876333222 111111000 01122222 22233332334579
Q ss_pred HHHHHHcCCceeecCCccccch
Q 022161 272 AEEAKDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 272 a~EA~e~GLID~I~~~~~~al~ 293 (301)
++||+++||||+|+.. .+.++
T Consensus 165 a~eA~~~Glv~~vv~~-~~l~~ 185 (255)
T PRK08150 165 AQEGERLGLAQYLVPA-GEALD 185 (255)
T ss_pred HHHHHHcCCccEeeCc-hHHHH
Confidence 9999999999999874 34433
No 70
>PLN02921 naphthoate synthase
Probab=98.54 E-value=2.1e-06 Score=82.85 Aligned_cols=137 Identities=18% Similarity=0.114 Sum_probs=91.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHHH----------------HHHHHHHHhhCCCeEEEEcC
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~ag----------------~aIyd~m~~~~~pV~Tvv~G 189 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |.||++... ..++..|+.+++||++.+.|
T Consensus 91 l~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG 170 (327)
T PLN02921 91 FRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAG 170 (327)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 788888999999888876655554444311 344554310 12455677788999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
.|..+|..|+++||. |++.+++.|.+..+..|.. ....-.. .+.+..| .....+++-....
T Consensus 171 ~a~GGG~~LalacD~--riA~~~A~f~~pe~~~Gl~---p~~gg~~------------~L~rliG--~~~A~ellltG~~ 231 (327)
T PLN02921 171 YAVGGGHILHMVCDL--TIAADNAVFGQTGPKVGSF---DAGYGSS------------IMARLVG--QKKAREMWFLARF 231 (327)
T ss_pred EEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCC---CCccHHH------------HHHHHhC--HHHHHHHHHcCCc
Confidence 999999999999999 9999999998766544321 1100000 0111112 2233344433456
Q ss_pred cCHHHHHHcCCceeecC
Q 022161 270 MSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~ 286 (301)
|+|+||+++||||+|+.
T Consensus 232 ~~A~eA~~~GLV~~vv~ 248 (327)
T PLN02921 232 YTASEALKMGLVNTVVP 248 (327)
T ss_pred CCHHHHHHCCCceEEeC
Confidence 79999999999999985
No 71
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.53 E-value=3.1e-06 Score=78.57 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=90.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHH-------------HHHHHHHHHhhCCCeEEEEcCccch
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS 193 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~a-------------g~aIyd~m~~~~~pV~Tvv~G~AAS 193 (301)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 111 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALG 111 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEc
Confidence 78888888888888887665556555531 133444422 1234566777889999999999999
Q ss_pred HhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 022161 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAE 273 (301)
Q Consensus 194 aaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~ 273 (301)
+|.-|+++||. |++.++++|.+-....|. ..+..-. ..+.+..| .....+++-....++++
T Consensus 112 gG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~------------~~l~~~vG--~~~a~~l~l~g~~~~a~ 172 (261)
T PRK08138 112 GGCELAMHADI--IVAGESASFGQPEIKVGL---MPGAGGT------------QRLVRAVG--KFKAMRMALTGCMVPAP 172 (261)
T ss_pred HHHHHHHhCCE--EEecCCCEeeCccccccc---CCCCcHH------------HHHHHHhC--HHHHHHHHHcCCCCCHH
Confidence 99999999999 999999988764333221 1111100 00112222 22233333333457999
Q ss_pred HHHHcCCceeecCC
Q 022161 274 EAKDYGLIDGVVMN 287 (301)
Q Consensus 274 EA~e~GLID~I~~~ 287 (301)
||+++||||+|+..
T Consensus 173 eA~~~Glv~~vv~~ 186 (261)
T PRK08138 173 EALAIGLVSEVVED 186 (261)
T ss_pred HHHHCCCCcEecCc
Confidence 99999999999853
No 72
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=2.8e-06 Score=79.25 Aligned_cols=137 Identities=17% Similarity=0.076 Sum_probs=90.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHH-----------------HHHHHHHHHhhCCCeEEEEc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA-----------------GMAIFDTIRHIRPDVSTVCV 188 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~a-----------------g~aIyd~m~~~~~pV~Tvv~ 188 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~ 114 (269)
T PRK06127 35 MSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIR 114 (269)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 788888888888888877655555554321 12344321 01234567778899999999
Q ss_pred CccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 022161 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268 (301)
Q Consensus 189 G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~ 268 (301)
|.|..+|.-|+++||. |++.++++|.+.....|.. -+..- . ..+.+..| .....+++-...
T Consensus 115 G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~vG--~~~a~~l~ltg~ 175 (269)
T PRK06127 115 GYCIGGGMGIALACDI--RIAAEDSRFGIPAARLGLG---YGYDG----V--------KNLVDLVG--PSAAKDLFYTAR 175 (269)
T ss_pred CEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhCCC---CCccH----H--------HHHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 9999999998755433321 11100 0 00111122 223344433345
Q ss_pred ccCHHHHHHcCCceeecC
Q 022161 269 FMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 269 ~lTa~EA~e~GLID~I~~ 286 (301)
.++++||+++||||+|+.
T Consensus 176 ~~~a~eA~~~Glv~~vv~ 193 (269)
T PRK06127 176 RFDAAEALRIGLVHRVTA 193 (269)
T ss_pred CCCHHHHHHcCCCCEeeC
Confidence 579999999999999985
No 73
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=1.8e-06 Score=80.45 Aligned_cols=143 Identities=15% Similarity=0.088 Sum_probs=88.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHHH-----------------HHHHHHHHhhCCCeEEEEcC
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-----------------MAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~ag-----------------~aIyd~m~~~~~pV~Tvv~G 189 (301)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++... ..++..|..+++||++.+.|
T Consensus 36 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 115 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHG 115 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 67888888888888887766555555531 1333443210 12334556778999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
.|..+|.-|+++||. |++.++++|.+-....|. ..+..-.. . +.+..|. ....+++-....
T Consensus 116 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~~--~----------l~~~vG~--~~a~~l~ltg~~ 176 (268)
T PRK07327 116 PAVGAGLVAALLADI--SIAAKDARIIDGHTRLGV---AAGDHAAI--V----------WPLLCGM--AKAKYYLLLCEP 176 (268)
T ss_pred eeeehhhHHHHhCCE--EEecCCCEEeCcccccCC---CCCcchhh--H----------HHHHhCH--HHHHHHHHcCCc
Confidence 999999999999999 999999998753322221 11110000 0 0111111 122223323345
Q ss_pred cCHHHHHHcCCceeecCCccccch
Q 022161 270 MSAEEAKDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~~~~~al~ 293 (301)
|+++||+++||||+|+.. .+.++
T Consensus 177 ~~a~eA~~~Glv~~vv~~-~~l~~ 199 (268)
T PRK07327 177 VSGEEAERIGLVSLAVDD-DELLP 199 (268)
T ss_pred cCHHHHHHcCCcceecCH-HHHHH
Confidence 799999999999999853 34433
No 74
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=2.5e-06 Score=79.25 Aligned_cols=136 Identities=15% Similarity=0.110 Sum_probs=88.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH------------------HHHHHHHHHhhCCCeEEEEc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV 188 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a------------------g~aIyd~m~~~~~pV~Tvv~ 188 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. ...+++.|+.+++||++.+.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 108 (262)
T PRK07468 29 LSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQ 108 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 677788888888877765554555555421 23344321 01256678888999999999
Q ss_pred CccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 022161 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268 (301)
Q Consensus 189 G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~ 268 (301)
|.|..+|.-|+++||. |++.++++|.+-....|.. -+..-. .+..+ +......+++-...
T Consensus 109 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~---p~~g~~-------------~~~~~--vG~~~a~~lll~g~ 168 (262)
T PRK07468 109 GQAFGGGVGLISVCDV--AIAVSGARFGLTETRLGLI---PATISP-------------YVVAR--MGEANARRVFMSAR 168 (262)
T ss_pred CEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccCCC---cccchh-------------hHHhh--ccHHHHHHHHHhCC
Confidence 9999999999999999 9999999887644332211 111000 01111 22233344443345
Q ss_pred ccCHHHHHHcCCceeecC
Q 022161 269 FMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 269 ~lTa~EA~e~GLID~I~~ 286 (301)
-++++||+++||||+|..
T Consensus 169 ~~~a~eA~~~Glv~~v~~ 186 (262)
T PRK07468 169 LFDAEEAVRLGLLSRVVP 186 (262)
T ss_pred ccCHHHHHHcCCcceecC
Confidence 569999999999999986
No 75
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.52 E-value=2.1e-06 Score=82.53 Aligned_cols=137 Identities=23% Similarity=0.314 Sum_probs=96.3
Q ss_pred CCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHH-------HHHHHHHHHH---hhCCCeEEEEcCc
Q 022161 121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTIR---HIRPDVSTVCVGL 190 (301)
Q Consensus 121 ~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~-------ag~aIyd~m~---~~~~pV~Tvv~G~ 190 (301)
++++-..+|.++++-+....+-+...+. -.-+|+-.+||||..+. .+.+|...+. ....|+++++.|-
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R~m~lA~~--f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe 199 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALRLMKMAER--FKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE 199 (316)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 4566667788999888877666655443 35699999999997632 2345555554 4568999999999
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
|+|+|++.+..++. .+|.|++.+.+-.|.+. ..++.-.. ...++..+. .-+
T Consensus 200 ggsGGAla~~~aD~--v~m~~~a~~sVisPEg~------------a~Il~kd~-----------~~a~~aae~----~~~ 250 (316)
T TIGR00513 200 GGSGGALAIGVGDK--VNMLEYSTYSVISPEGC------------AAILWKDA-----------SKAPKAAEA----MKI 250 (316)
T ss_pred cccHHHhhhccCCE--EEEecCceEEecCHHHH------------HHHhccch-----------hhHHHHHHH----ccC
Confidence 99999998888888 99999999998887431 11111000 001222221 335
Q ss_pred CHHHHHHcCCceeecCCc
Q 022161 271 SAEEAKDYGLIDGVVMNP 288 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~~~ 288 (301)
|+.++++.|+||+|+..|
T Consensus 251 ta~~l~~~G~iD~II~ep 268 (316)
T TIGR00513 251 TAPDLKELGLIDSIIPEP 268 (316)
T ss_pred CHHHHHHCCCCeEeccCC
Confidence 899999999999999876
No 76
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=1.9e-06 Score=79.90 Aligned_cols=136 Identities=17% Similarity=0.090 Sum_probs=87.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHH------------------HHHHHHHHHhhCCCeEEEEc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV 188 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~a------------------g~aIyd~m~~~~~pV~Tvv~ 188 (301)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...++..|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 107 (262)
T PRK05995 28 FNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVH 107 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 67788888888888777655555444431 123344321 12244567778899999999
Q ss_pred CccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 022161 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268 (301)
Q Consensus 189 G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~ 268 (301)
|.|..+|.-|+++||. |++.++++|.+-....|.. .+... . .+.+..| .....+++-...
T Consensus 108 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~-~------------~l~~~vg--~~~a~~l~l~g~ 167 (262)
T PRK05995 108 GDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLGLI---PATIS-P------------YVIRAMG--ERAARRYFLTAE 167 (262)
T ss_pred CEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccccC---ccchH-H------------HHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 9999999987644433321 11110 0 0112222 223334333334
Q ss_pred ccCHHHHHHcCCceeecC
Q 022161 269 FMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 269 ~lTa~EA~e~GLID~I~~ 286 (301)
.++++||+++||||+|+.
T Consensus 168 ~~~a~eA~~~Glv~~vv~ 185 (262)
T PRK05995 168 RFDAAEALRLGLVHEVVP 185 (262)
T ss_pred ccCHHHHHHcCCCCeecC
Confidence 569999999999999985
No 77
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=1.9e-06 Score=80.09 Aligned_cols=137 Identities=20% Similarity=0.144 Sum_probs=85.7
Q ss_pred cCh-hHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHH----------------------HHHHHHHHhhCCCe
Q 022161 131 VED-DMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG----------------------MAIFDTIRHIRPDV 183 (301)
Q Consensus 131 Idd-~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag----------------------~aIyd~m~~~~~pV 183 (301)
++. ++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..+++.|..+++||
T Consensus 27 l~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpv 106 (266)
T PRK09245 27 LSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPV 106 (266)
T ss_pred CChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCE
Confidence 553 667777777777766555555555311 334443211 12445677788999
Q ss_pred EEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhh
Q 022161 184 STVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED 263 (301)
Q Consensus 184 ~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~ 263 (301)
++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. .+..-. . .+.+..|. ....++
T Consensus 107 Iaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~---p~~g~~--~----------~l~~~vG~--~~a~~l 167 (266)
T PRK09245 107 IAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLGLI---PGDGGA--W----------LLPRIIGM--ARAAEM 167 (266)
T ss_pred EEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccCcC---CCcchh--h----------hHHHHhhH--HHHHHH
Confidence 999999999999999999999 9999999987644433321 111000 0 01111111 122233
Q ss_pred hcCCcccCHHHHHHcCCceeecC
Q 022161 264 TDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 264 ~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
+-....|+++||+++||||+|+.
T Consensus 168 ~l~g~~~~a~eA~~~Glv~~vv~ 190 (266)
T PRK09245 168 AFTGDAIDAATALEWGLVSRVVP 190 (266)
T ss_pred HHcCCCcCHHHHHHcCCcceecC
Confidence 32335679999999999999986
No 78
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=1.6e-06 Score=81.16 Aligned_cols=137 Identities=18% Similarity=0.131 Sum_probs=87.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHHH----------------------HHHHHHHHhhCCCeE
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------------------MAIFDTIRHIRPDVS 184 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~ag----------------------~aIyd~m~~~~~pV~ 184 (301)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++... ..+++.|..+++||+
T Consensus 34 l~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 113 (276)
T PRK05864 34 MAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVI 113 (276)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 77888888888888777665555555531 1334444321 123456677889999
Q ss_pred EEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhh-
Q 022161 185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED- 263 (301)
Q Consensus 185 Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~- 263 (301)
+.+.|.|..+|.-|+++||. |++.++++|.+-....|... .+.... ..+.+..| .....++
T Consensus 114 aav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p--~~~g~~------------~~l~~~vG--~~~A~~l~ 175 (276)
T PRK05864 114 AAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGINNGLTA--SELGLS------------YLLPRAIG--SSRAFEIM 175 (276)
T ss_pred EEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccccCCCC--CCcchh------------eehHhhhC--HHHHHHHH
Confidence 99999999999999999999 99999998875433322110 011000 00111222 2223333
Q ss_pred hcCCcccCHHHHHHcCCceeecC
Q 022161 264 TDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 264 ~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
+.+ ..++++||+++||||+|+.
T Consensus 176 l~g-~~~~a~eA~~~Glv~~vv~ 197 (276)
T PRK05864 176 LTG-RDVDAEEAERIGLVSRQVP 197 (276)
T ss_pred HcC-CccCHHHHHHcCCcceeeC
Confidence 333 3469999999999999985
No 79
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.50 E-value=3.2e-06 Score=78.41 Aligned_cols=138 Identities=15% Similarity=0.076 Sum_probs=88.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHHHH----------HH--HHHHHhhCCCeEEEEcCccch
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAGM----------AI--FDTIRHIRPDVSTVCVGLAAS 193 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~ag~----------aI--yd~m~~~~~pV~Tvv~G~AAS 193 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.... .+ +..+..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 107 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMG 107 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEec
Confidence 677888888888888877665665555322 2255543211 11 122335678999999999999
Q ss_pred HhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 022161 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAE 273 (301)
Q Consensus 194 aaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~ 273 (301)
+|.-|+++||. |++.++++|.+.....|. ..+..- .. .+.+..| .....+++-....++++
T Consensus 108 gG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~----~~--------~l~~~vg--~~~a~~lll~g~~~~a~ 168 (259)
T PRK06494 108 GGFELALACDL--IVAAENATFALPEPRVGL---AALAGG----LH--------RLPRQIG--LKRAMGMILTGRRVTAR 168 (259)
T ss_pred HHHHHHHhCCE--EEEeCCCEEeCcccccCC---CCCchH----HH--------HHHHHcC--HHHHHHHHHcCCcCCHH
Confidence 99999999999 999999998875443332 111110 00 1122222 22333333333567999
Q ss_pred HHHHcCCceeecCC
Q 022161 274 EAKDYGLIDGVVMN 287 (301)
Q Consensus 274 EA~e~GLID~I~~~ 287 (301)
||+++||||+|+..
T Consensus 169 eA~~~GLv~~vv~~ 182 (259)
T PRK06494 169 EGLELGFVNEVVPA 182 (259)
T ss_pred HHHHcCCCcEecCH
Confidence 99999999999863
No 80
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.50 E-value=4e-06 Score=77.19 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=92.9
Q ss_pred EEEEccc----cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHH-----------------HHHHHHHHH
Q 022161 124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA-----------------GMAIFDTIR 177 (301)
Q Consensus 124 II~L~G~----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~a-----------------g~aIyd~m~ 177 (301)
+|.|+.+ ++.++.+.+.+.+..++.++..+.++|.-. |.|+++.. ...++..|.
T Consensus 12 ~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (239)
T PLN02267 12 ILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLI 91 (239)
T ss_pred EEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHh
Confidence 3445444 778888888888887776544343444322 23444321 112345567
Q ss_pred hhCCCeEEEEcCccchHhHHHHhcCCCCceEecC-CeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022161 178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLP-NSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 256 (301)
Q Consensus 178 ~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~P-nS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s 256 (301)
.+++||++.+.|.|..+|..|+++||. |++.+ .++|.+-....|.. ..+.. ...+.++.|..
T Consensus 92 ~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~--~p~~~-------------~~~l~~~vG~~ 154 (239)
T PLN02267 92 SLPMPTIAAVTGHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIGLP--LPDYF-------------MALLRAKIGSP 154 (239)
T ss_pred cCCCCEEEEECCcchHHHHHHHHHCCE--EEecCCCCeEeccccccCCC--CChHH-------------HHHHHHHcChH
Confidence 778999999999999999999999999 99985 46776543332221 01110 01122333322
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCceeecCCccccchh
Q 022161 257 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 294 (301)
Q Consensus 257 ~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~ 294 (301)
.. ..+++-....|+++||+++||||+|+....+.++.
T Consensus 155 ~a-~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~ 191 (239)
T PLN02267 155 AA-RRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEA 191 (239)
T ss_pred HH-HHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHH
Confidence 21 12344334567999999999999999754444443
No 81
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.50 E-value=2.2e-06 Score=79.25 Aligned_cols=137 Identities=19% Similarity=0.151 Sum_probs=88.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH-----------H-------HHHHHHHHhhCCCeEEEEc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-----------G-------MAIFDTIRHIRPDVSTVCV 188 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a-----------g-------~aIyd~m~~~~~pV~Tvv~ 188 (301)
++.++.+.+.+.|..++.++ .+.|+|.=+ |.|+++.. . ..+++.|..+++||++.+.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 101 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVN 101 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 67888888888888887665 666665311 23343321 0 1234567788999999999
Q ss_pred CccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 022161 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268 (301)
Q Consensus 189 G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~ 268 (301)
|.|..+|..|+++||. |++.+++.|.+-....| -..+..-. . .+.+..|. ....+++-...
T Consensus 102 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~lG---~~p~~g~~----~--------~l~~~vG~--~~a~~l~l~g~ 162 (256)
T TIGR02280 102 GVAAGAGANLALACDI--VLAAESARFIQAFAKIG---LIPDSGGT----W--------SLPRLVGR--ARAMGLAMLGE 162 (256)
T ss_pred CeeehHHHHHHHhCCE--EEecCCCEEeChhhhcC---CCCCccHH----H--------HHHHHhCH--HHHHHHHHcCC
Confidence 9999999999999999 99999999875333222 11111100 0 01111121 22233332334
Q ss_pred ccCHHHHHHcCCceeecCC
Q 022161 269 FMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 269 ~lTa~EA~e~GLID~I~~~ 287 (301)
.++++||+++||||+|+..
T Consensus 163 ~~~a~eA~~~Glv~~vv~~ 181 (256)
T TIGR02280 163 KLDARTAASWGLIWQVVDD 181 (256)
T ss_pred CCCHHHHHHcCCcceeeCh
Confidence 5799999999999999864
No 82
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.50 E-value=2.6e-06 Score=78.41 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=91.1
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEE----EcCCCCcHHH----------HHHHHHHHHhhCCCeE
Q 022161 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTA----------GMAIFDTIRHIRPDVS 184 (301)
Q Consensus 124 II~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~----INSPGGsV~a----------g~aIyd~m~~~~~pV~ 184 (301)
+|.|+-| ++.++.+.+.+.+..++. +..+.|+|. .=|.|+++.. ...+++.|..+++||+
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~I 90 (243)
T PRK07854 12 TIELQRPERRNALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVI 90 (243)
T ss_pred EEEeCCCccccCCCHHHHHHHHHHHHHHhc-CCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 3555533 788888888888887763 344444443 1133444321 1335566778899999
Q ss_pred EEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhh
Q 022161 185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDT 264 (301)
Q Consensus 185 Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~ 264 (301)
+.+.|.|.++|..|+++||- |++.++++|.+-....| -.-+..- . ..+.+..|. ....+++
T Consensus 91 aav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G---~~p~~g~----~--------~~l~~~~G~--~~a~~l~ 151 (243)
T PRK07854 91 AAINGPAIGAGLQLAMACDL--RVVAPEAYFQFPVAKYG---IALDNWT----I--------RRLSSLVGG--GRARAML 151 (243)
T ss_pred EEecCcccccHHHHHHhCCE--EEEcCCCEEeccccccc---cCCCccH----H--------HHHHHHhCH--HHHHHHH
Confidence 99999999999999999999 99999999875322222 1111110 0 012222232 2333444
Q ss_pred cCCcccCHHHHHHcCCceeecC
Q 022161 265 DRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 265 ~rd~~lTa~EA~e~GLID~I~~ 286 (301)
-....++++||+++||||+|..
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC
Confidence 3345679999999999999953
No 83
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.50 E-value=2e-06 Score=79.36 Aligned_cols=140 Identities=19% Similarity=0.184 Sum_probs=90.1
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHH------------HHHHHHHHHhhCCC
Q 022161 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------GMAIFDTIRHIRPD 182 (301)
Q Consensus 124 II~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~a------------g~aIyd~m~~~~~p 182 (301)
+|.|+-| ++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...++..|..+++|
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kP 91 (248)
T PRK06072 12 IVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKI 91 (248)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4555543 78888889988888887665555555431 134455432 12244566778899
Q ss_pred eEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHh
Q 022161 183 VSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINE 262 (301)
Q Consensus 183 V~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~ 262 (301)
|++.+.|.|..+|..|+++||. |++.++++|.+.....| -..+..-. . .+.+..|. ...+
T Consensus 92 vIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~~~~~~G---l~p~~g~~--~----------~l~~~~g~---~a~~ 151 (248)
T PRK06072 92 YISAINGVTAGACIGIALSTDF--KFASRDVKFVTAFQRLG---LASDTGVA--Y----------FLLKLTGQ---RFYE 151 (248)
T ss_pred EEEEECCeeehHHHHHHHhCCE--EEEcCCCEEecchhhcC---cCCCchHH--H----------HHHHHhhH---HHHH
Confidence 9999999999999999999999 99999999876444322 22121110 0 01111231 1222
Q ss_pred -hhcCCcccCHHHHHHcCCceee
Q 022161 263 -DTDRDFFMSAEEAKDYGLIDGV 284 (301)
Q Consensus 263 -~~~rd~~lTa~EA~e~GLID~I 284 (301)
++.++ .++++||+++||||++
T Consensus 152 lll~g~-~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 152 ILVLGG-EFTAEEAERWGLLKIS 173 (248)
T ss_pred HHHhCC-ccCHHHHHHCCCcccc
Confidence 23443 4699999999999964
No 84
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.49 E-value=2.3e-06 Score=84.68 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=90.5
Q ss_pred EccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHH-------HHHHHHHHH---HhhCCCeEEEEcCccchHhH
Q 022161 127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTI---RHIRPDVSTVCVGLAASMGA 196 (301)
Q Consensus 127 L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~-------ag~aIyd~m---~~~~~pV~Tvv~G~AASaaa 196 (301)
..|.++++-+....+-+...+. -.-+|+-.|||||.... .+.+|...+ ...+.|+++++.|-+.|+|+
T Consensus 198 nfG~~~peGyRKAlR~mklAek--f~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGA 275 (431)
T PLN03230 198 NFAMPQPNGYRKALRFMRHAEK--FGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGA 275 (431)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHH
Confidence 3466778777776666655443 35699999999996531 234565544 44568999999999999999
Q ss_pred HHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHH
Q 022161 197 FLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAK 276 (301)
Q Consensus 197 ~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~ 276 (301)
+.+..|+. .+|.+++.+.+-.|.+. ..++. +...... +..+ ..-+|+++++
T Consensus 276 lalg~aD~--VlMle~A~ysVisPEga------------AsILw----------kd~~~A~-eAAe----alkitA~dL~ 326 (431)
T PLN03230 276 LAIGCGNR--MLMMENAVYYVASPEAC------------AAILW----------KSAAAAP-KAAE----ALRITAAELV 326 (431)
T ss_pred HHhhcCCE--EEEecCCEEEecCHHHH------------HHHHh----------ccccchH-HHHH----HcCCCHHHHH
Confidence 99998988 99999999988777321 11110 0000111 1111 2256999999
Q ss_pred HcCCceeecCCc
Q 022161 277 DYGLIDGVVMNP 288 (301)
Q Consensus 277 e~GLID~I~~~~ 288 (301)
++|+||+|+..+
T Consensus 327 ~~GiID~II~Ep 338 (431)
T PLN03230 327 KLGVVDEIVPEP 338 (431)
T ss_pred hCCCCeEeccCC
Confidence 999999999866
No 85
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.49 E-value=3.2e-06 Score=81.44 Aligned_cols=137 Identities=19% Similarity=0.301 Sum_probs=95.2
Q ss_pred CCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHH-------HHHHHHHHH---HhhCCCeEEEEcCc
Q 022161 121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTI---RHIRPDVSTVCVGL 190 (301)
Q Consensus 121 ~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~-------ag~aIyd~m---~~~~~pV~Tvv~G~ 190 (301)
++++-..+|.++++.++...+-+...+. -.-+|+-.|||||..+. .+.+|...+ .....|+++++.|-
T Consensus 122 ~e~~~~~~G~~~peg~rKa~R~m~lA~~--f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGe 199 (319)
T PRK05724 122 KEKIRRNFGMPRPEGYRKALRLMKMAEK--FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGE 199 (319)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4455567788888887777666654443 35699999999996532 123444444 45668999999999
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
|.|+|++.+..++. .+|.|++.+.+-.|.+. ..++. +...+ .++..+ ..-+
T Consensus 200 g~sGGAla~~~aD~--v~m~~~A~~svisPEg~------------a~Il~----------~~~~~-a~~aae----~~~i 250 (319)
T PRK05724 200 GGSGGALAIGVGDR--VLMLEYSTYSVISPEGC------------ASILW----------KDASK-APEAAE----AMKI 250 (319)
T ss_pred ccHHHHHHHhccCe--eeeecCceEeecCHHHH------------HHHHh----------cCchh-HHHHHH----HcCC
Confidence 99999999998988 99999999998877431 11111 00011 122222 2336
Q ss_pred CHHHHHHcCCceeecCCc
Q 022161 271 SAEEAKDYGLIDGVVMNP 288 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~~~ 288 (301)
|+.++++.|+||+|+..+
T Consensus 251 ta~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 251 TAQDLKELGIIDEIIPEP 268 (319)
T ss_pred CHHHHHHCCCceEeccCC
Confidence 999999999999999866
No 86
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=1.4e-06 Score=82.34 Aligned_cols=136 Identities=17% Similarity=0.143 Sum_probs=86.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH-------------------------------------H
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------------------------------G 169 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a-------------------------------------g 169 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. .
T Consensus 28 l~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (288)
T PRK08290 28 QNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVY 107 (288)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 677788888888877776555555554211 22333321 0
Q ss_pred HHHHHHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 022161 170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYL 249 (301)
Q Consensus 170 ~aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~ 249 (301)
..++..|+.+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|..| ... +. +
T Consensus 108 ~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~~----~~~----~~-l-------- 168 (288)
T PRK08290 108 LGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIPG----VEY----FA-H-------- 168 (288)
T ss_pred HHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcCc----chH----HH-H--------
Confidence 12335577789999999999999999999999999 99999999875333333222 110 00 0
Q ss_pred HHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCC
Q 022161 250 SYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 250 A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~ 287 (301)
....| .....+++-....++++||+++||||+|+..
T Consensus 169 ~~~iG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~ 204 (288)
T PRK08290 169 PWELG--PRKAKELLFTGDRLTADEAHRLGMVNRVVPR 204 (288)
T ss_pred HHHhh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH
Confidence 01112 2233333333356799999999999999863
No 87
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=2e-06 Score=79.90 Aligned_cols=139 Identities=16% Similarity=0.147 Sum_probs=88.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHH----------------HHHHHHHHHhhCCCeEEEEcC
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~a----------------g~aIyd~m~~~~~pV~Tvv~G 189 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.|
T Consensus 32 l~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 111 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAG 111 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 577778888888887776555555554311 23444321 122445667788999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
.|..+|.-|+++||. |++.++++|.+-... ..|-..+..-. . .+.+..| .....+++-....
T Consensus 112 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~--~~G~~p~~g~~----~--------~l~~~vG--~~~a~~l~l~g~~ 173 (262)
T PRK06144 112 ACVGGGAAIAAACDL--RIATPSARFGFPIAR--TLGNCLSMSNL----A--------RLVALLG--AARVKDMLFTARL 173 (262)
T ss_pred eeeehHHHHHHhCCE--EEecCCCEeechhHH--hccCCCCccHH----H--------HHHHHhC--HHHHHHHHHcCCC
Confidence 999999999999999 999999998753221 01211111100 0 1122222 2233444434456
Q ss_pred cCHHHHHHcCCceeecCC
Q 022161 270 MSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~~ 287 (301)
++++||+++||||+|+..
T Consensus 174 ~~a~eA~~~Glv~~vv~~ 191 (262)
T PRK06144 174 LEAEEALAAGLVNEVVED 191 (262)
T ss_pred cCHHHHHHcCCcCeecCH
Confidence 799999999999999864
No 88
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.49 E-value=4.1e-06 Score=78.48 Aligned_cols=137 Identities=18% Similarity=0.263 Sum_probs=96.1
Q ss_pred CCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHH-------HHHHHHHHHH---hhCCCeEEEEcCc
Q 022161 121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTIR---HIRPDVSTVCVGL 190 (301)
Q Consensus 121 ~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~-------ag~aIyd~m~---~~~~pV~Tvv~G~ 190 (301)
++++...+|.++++......+-+...+. -.-+|+-.+||||..+. .+..|...+. ....|+++++.|-
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R~~~lA~~--~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALRLMKQAEK--FGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4456667899999888877666654443 35699999999997642 1234555444 3458999999999
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
|+|+|++.++.+|. .+|.|++.+.+-.|.+. ..+.. +. ....++..+.+ -+
T Consensus 147 ~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~------------a~il~----------~~-~~~a~~aa~~~----~~ 197 (256)
T PRK12319 147 GGSGGALALAVADQ--VWMLENTMYAVLSPEGF------------ASILW----------KD-GSRATEAAELM----KI 197 (256)
T ss_pred cCcHHHHHhhcCCE--EEEecCceEEEcCHHHH------------HHHHh----------cC-cccHHHHHHHc----CC
Confidence 99999999999998 99999999998877331 11110 00 01112222222 24
Q ss_pred CHHHHHHcCCceeecCCc
Q 022161 271 SAEEAKDYGLIDGVVMNP 288 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~~~ 288 (301)
|+.++.+.|+||+|+..+
T Consensus 198 ~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 198 TAGELLEMGVVDKVIPEH 215 (256)
T ss_pred CHHHHHHCCCCcEecCCC
Confidence 999999999999999865
No 89
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.48 E-value=3.7e-06 Score=78.84 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=88.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHH-------------------HHHHHHHHHhhCCCeEEEE
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------------GMAIFDTIRHIRPDVSTVC 187 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~a-------------------g~aIyd~m~~~~~pV~Tvv 187 (301)
++.++.+.+.+.|..++.++..+.|+|.= =|-|+++.. ...+++.|..+++||++.+
T Consensus 32 l~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMV 111 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 78888888888888887665555555531 123344322 1123456777889999999
Q ss_pred cCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCC
Q 022161 188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRD 267 (301)
Q Consensus 188 ~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd 267 (301)
.|.|..+|.-|+++||. |++.++++|.+-....|. ..+..-. ..+.+..| .....+++-..
T Consensus 112 ~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~------------~~l~~~iG--~~~a~~llltg 172 (275)
T PRK09120 112 NGWCFGGGFSPLVACDL--AIAADEAQFGLSEINWGI---PPGGGVS------------KAMADTVG--HRDALYYIMTG 172 (275)
T ss_pred cCEEechhHHHHHhCCE--EEEeCCcEecCCccccCC---CCCcchH------------HHHHHHcC--HHHHHHHHhcC
Confidence 99999999999999999 999999998763322221 1111100 01112222 22333333333
Q ss_pred cccCHHHHHHcCCceeecC
Q 022161 268 FFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 268 ~~lTa~EA~e~GLID~I~~ 286 (301)
..++++||+++||||+|+.
T Consensus 173 ~~~~A~eA~~~Glv~~vv~ 191 (275)
T PRK09120 173 ETFTGRKAAEMGLVNESVP 191 (275)
T ss_pred CccCHHHHHHcCCcceecC
Confidence 4579999999999999986
No 90
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.47 E-value=3.2e-06 Score=78.16 Aligned_cols=135 Identities=18% Similarity=0.146 Sum_probs=86.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEcCCC------CcHHH-------------------HHHHHHHHHhhCCCeEE
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTA-------------------GMAIFDTIRHIRPDVST 185 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPG------GsV~a-------------------g~aIyd~m~~~~~pV~T 185 (301)
++.++...+.+.|..++.++..+.|+| .+-| +++.. ...++..|..+++||++
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 26 FNIPMCQEILEALRLAEEDPSVRFLLI--NANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 677888888888877776554554443 3333 33321 12344567778999999
Q ss_pred EEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhc
Q 022161 186 VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTD 265 (301)
Q Consensus 186 vv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~ 265 (301)
.+.|.|..+|..|+++||. |++.++++|.+-....| -..+..-.. .+.+.-| .....+++-
T Consensus 104 av~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~G---l~p~~g~~~------------~l~~~vg--~~~a~~l~l 164 (255)
T PRK07260 104 CVDGAVAGAAANMAVAADF--CIASTKTKFIQAFVGVG---LAPDAGGLF------------LLTRAIG--LNRATHLAM 164 (255)
T ss_pred EecCeeehhhHHHHHhCCE--EEEeCCCEEechHhhcC---CCCCCchhh------------hhHHhhC--HHHHHHHHH
Confidence 9999999999999999999 99999999875322222 111110000 0111112 222344443
Q ss_pred CCcccCHHHHHHcCCceeecC
Q 022161 266 RDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 266 rd~~lTa~EA~e~GLID~I~~ 286 (301)
....++++||+++||||+|+.
T Consensus 165 ~g~~~sa~eA~~~Glv~~vv~ 185 (255)
T PRK07260 165 TGEALTAEKALEYGFVYRVAE 185 (255)
T ss_pred hCCccCHHHHHHcCCcceecC
Confidence 345679999999999999985
No 91
>PRK08321 naphthoate synthase; Validated
Probab=98.47 E-value=4e-06 Score=79.79 Aligned_cols=143 Identities=19% Similarity=0.114 Sum_probs=93.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEE-----------EcCCCCcHHHH-----------------------H---HHH
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMY-----------LNSPGGSVTAG-----------------------M---AIF 173 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~-----------INSPGGsV~ag-----------------------~---aIy 173 (301)
++.++...+.+.|..++.++..+.|+|. .=|.||++... . .+.
T Consensus 49 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (302)
T PRK08321 49 FRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQ 128 (302)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 7888888888888888776666666664 23566665320 0 234
Q ss_pred HHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEec-CCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 022161 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL-PNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYH 252 (301)
Q Consensus 174 d~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~-PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~ 252 (301)
+.|..+++||++.+.|.|..+|.-|+++||. |++. ++++|.+-....|. .....-. ..+.+.
T Consensus 129 ~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl---~p~~~~~------------~~L~r~ 191 (302)
T PRK08321 129 RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDADVGS---FDGGYGS------------AYLARQ 191 (302)
T ss_pred HHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCcccccc---CCCchHH------------HHHHHH
Confidence 5567788999999999999999999999999 9998 68988753332221 1010000 011222
Q ss_pred hCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccch
Q 022161 253 TGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 253 tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~ 293 (301)
.| .....+++-....++|+||+++||||+|+.. .+.++
T Consensus 192 vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~ 229 (302)
T PRK08321 192 VG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH-AELET 229 (302)
T ss_pred hC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCH-HHHHH
Confidence 23 2223344433456799999999999999863 34433
No 92
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.47 E-value=2.7e-06 Score=78.79 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=87.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHH-----------------HHHHHHHHHhhCCCeEEEEcC
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-----------------GMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~a-----------------g~aIyd~m~~~~~pV~Tvv~G 189 (301)
++.++.+.+.+.|..++ +..+.|+|.= =|.|+++.. ...++..|..+++||++.|.|
T Consensus 28 l~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 105 (255)
T PRK07112 28 INDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRG 105 (255)
T ss_pred CCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEec
Confidence 67777777777777665 2234333321 133343321 123455667778999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
.|..+|..|+++||. |++.++++|.+.....|.. ..... ..+.+..| .....+++-...-
T Consensus 106 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~~~-------------~~l~~~vg--~~~a~~l~l~g~~ 165 (255)
T PRK07112 106 KVNAGGIGFVAASDI--VIADETAPFSLSELLFGLI---PACVL-------------PFLIRRIG--TQKAHYMTLMTQP 165 (255)
T ss_pred EEEcchhHHHHcCCE--EEEcCCCEEeCchhhhccC---cchhh-------------HHHHHHhC--HHHHHHHHHhCCc
Confidence 999999999999999 9999999998755433321 11100 01112222 2233333333345
Q ss_pred cCHHHHHHcCCceeecCCccccchh
Q 022161 270 MSAEEAKDYGLIDGVVMNPHKILQP 294 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~~~~~al~~ 294 (301)
++++||+++||||+|+.+..+....
T Consensus 166 ~~a~eA~~~Glv~~vv~~~~~~~~~ 190 (255)
T PRK07112 166 VTAQQAFSWGLVDAYGANSDTLLRK 190 (255)
T ss_pred ccHHHHHHcCCCceecCcHHHHHHH
Confidence 7999999999999998755433333
No 93
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.46 E-value=3.9e-06 Score=77.57 Aligned_cols=137 Identities=16% Similarity=0.111 Sum_probs=85.2
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHHH---------------HH-HHHHHHhhCCCeEEEEcC
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG---------------MA-IFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~ag---------------~a-Iyd~m~~~~~pV~Tvv~G 189 (301)
++.++.+.+.+.|..++.++..+.|+|. . |-|+++... .. +...|+.+++||++.+.|
T Consensus 23 l~~~~~~~l~~~l~~~~~d~~vrvvvl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 101 (255)
T PRK06563 23 FDSAMLDDLALALGEYEADDELRVAVLF-AHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQG 101 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEE-CCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcC
Confidence 6778888888888777665444443332 2 223443210 11 122466678999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
.|..+|..|+++||. |++.++++|.+.....|.. .+..-. .. +.+..|. ....+++-....
T Consensus 102 ~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~~--------l~~~vG~--~~a~~l~ltg~~ 162 (255)
T PRK06563 102 YCLTLGIELMLAADI--VVAADNTRFAQLEVQRGIL---PFGGAT----LR--------FPQAAGW--GNAMRYLLTGDE 162 (255)
T ss_pred eeecHHHHHHHhCCE--EEecCCCEEeChhhhcCCC---CCccHH----HH--------HHHHhhH--HHHHHHHHcCCC
Confidence 999999999999999 9999999987754433321 111000 00 1111121 222333333345
Q ss_pred cCHHHHHHcCCceeecCC
Q 022161 270 MSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~~ 287 (301)
|+++||+++||||+|+..
T Consensus 163 ~~a~eA~~~Glv~~vv~~ 180 (255)
T PRK06563 163 FDAQEALRLGLVQEVVPP 180 (255)
T ss_pred cCHHHHHHcCCCcEeeCH
Confidence 799999999999999854
No 94
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.46 E-value=2.7e-06 Score=78.82 Aligned_cols=142 Identities=14% Similarity=0.113 Sum_probs=86.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEcCCC------CcHHH------------------HHHHHHHHHhhCCCeEEE
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTA------------------GMAIFDTIRHIRPDVSTV 186 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPG------GsV~a------------------g~aIyd~m~~~~~pV~Tv 186 (301)
++.++.+.+.+.|..++.++..+.|+| .+.| +++.. ...+++.|..+++||++.
T Consensus 30 l~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAADPAVRAVVL--THTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAA 107 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 677777788777777765544444444 3333 23211 122445566778999999
Q ss_pred EcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhh-hc
Q 022161 187 CVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED-TD 265 (301)
Q Consensus 187 v~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~-~~ 265 (301)
+.|.|..+|.-|+++||. |++.++++|.+-....|. ..+..-. .+. . . .+ .....++ +.
T Consensus 108 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~--~~l--~----~-----l~--~~~a~~l~l~ 167 (260)
T PRK07827 108 IDGHVRAGGFGLVGACDI--VVAGPESTFALTEARIGV---APAIISL--TLL--P----R-----LS--PRAAARYYLT 167 (260)
T ss_pred EcCeeecchhhHHHhCCE--EEEcCCCEEeCcccccCC---CCCcccc--hhH--H----h-----hh--HHHHHHHHHh
Confidence 999999999999999999 999999988763332221 1111100 000 0 0 00 0011222 33
Q ss_pred CCcccCHHHHHHcCCceeecCCccccchhh
Q 022161 266 RDFFMSAEEAKDYGLIDGVVMNPHKILQPV 295 (301)
Q Consensus 266 rd~~lTa~EA~e~GLID~I~~~~~~al~~~ 295 (301)
+ ..++++||+++||||+|.++..+....+
T Consensus 168 g-~~~~a~eA~~~Glv~~v~~~l~~~a~~~ 196 (260)
T PRK07827 168 G-EKFGAAEAARIGLVTAAADDVDAAVAAL 196 (260)
T ss_pred C-CccCHHHHHHcCCcccchHHHHHHHHHH
Confidence 4 4469999999999999976544444333
No 95
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.46 E-value=4.3e-06 Score=77.33 Aligned_cols=144 Identities=19% Similarity=0.066 Sum_probs=90.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEE----EcCCCCcHHHHH----------HHHHHH-HhhCCCeEEEEcCccchHh
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGM----------AIFDTI-RHIRPDVSTVCVGLAASMG 195 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~----INSPGGsV~ag~----------aIyd~m-~~~~~pV~Tvv~G~AASaa 195 (301)
++.++.+.+.+.|..++.++..+.|+|. .=|.|+++.... .+...+ ..+++||++.+.|.|..+|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG 106 (254)
T PRK08252 27 VNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGG 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEehHH
Confidence 7888889999999888766555655553 113445543210 111111 3467899999999999999
Q ss_pred HHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHH
Q 022161 196 AFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEA 275 (301)
Q Consensus 196 a~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA 275 (301)
.-|+++||. |++.++++|.+-....| -.-+..- . ..+.+..| .....+++-....++++||
T Consensus 107 ~~lalacD~--~ia~~~a~f~~pe~~~G---l~p~~g~----~--------~~l~~~vg--~~~a~~l~l~g~~~~a~eA 167 (254)
T PRK08252 107 FELALACDL--IVAARDAKFGLPEVKRG---LVAAGGG----L--------LRLPRRIP--YHIAMELALTGDMLTAERA 167 (254)
T ss_pred HHHHHhCCE--EEEeCCCEEeCchhhcC---CCCCchH----H--------HHHHHHcC--HHHHHHHHHcCCccCHHHH
Confidence 999999999 99999999875333222 1111110 0 01122223 2333444433455799999
Q ss_pred HHcCCceeecCCccccchh
Q 022161 276 KDYGLIDGVVMNPHKILQP 294 (301)
Q Consensus 276 ~e~GLID~I~~~~~~al~~ 294 (301)
+++||||+|+. ..+.++.
T Consensus 168 ~~~Glv~~vv~-~~~l~~~ 185 (254)
T PRK08252 168 HELGLVNRLTE-PGQALDA 185 (254)
T ss_pred HHcCCcceecC-cchHHHH
Confidence 99999999986 3344433
No 96
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.46 E-value=1.7e-06 Score=79.70 Aligned_cols=133 Identities=19% Similarity=0.077 Sum_probs=86.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHHH---------------HHHHHHHHhhCCCeEEEEcCcc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG---------------MAIFDTIRHIRPDVSTVCVGLA 191 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~ag---------------~aIyd~m~~~~~pV~Tvv~G~A 191 (301)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++... ...+..|..+++||++.+.|.|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 106 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAA 106 (249)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 67888888888888877665555554431 1233443221 1233456677899999999999
Q ss_pred chHhHHHHhcCCCCceEecCCeEEEeecCCCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 022161 192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA---QGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268 (301)
Q Consensus 192 ASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~---~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~ 268 (301)
..+|.-|+++||. |++.++++|.+.....|. .|-..- +.+..| .....+++-...
T Consensus 107 ~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~------------------l~~~~G--~~~a~~l~ltg~ 164 (249)
T PRK05870 107 VGAGLNLALAADV--RIAGPKALFDARFQKLGLHPGGGATWM------------------LQRAVG--PQVARAALLFGM 164 (249)
T ss_pred EchhHHHHHhCCE--EEEcCCCEEeCcccccCcCCCCcceee------------------HHhhhC--HHHHHHHHHhCC
Confidence 9999999999999 999999999765443331 111100 111111 223333333334
Q ss_pred ccCHHHHHHcCCceeec
Q 022161 269 FMSAEEAKDYGLIDGVV 285 (301)
Q Consensus 269 ~lTa~EA~e~GLID~I~ 285 (301)
.++++||+++||||+|+
T Consensus 165 ~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 165 RFDAEAAVRHGLALMVA 181 (249)
T ss_pred ccCHHHHHHcCCHHHHH
Confidence 67999999999999998
No 97
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.46 E-value=3.8e-06 Score=77.74 Aligned_cols=138 Identities=19% Similarity=0.175 Sum_probs=88.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH-------------HHHHHHHHHhhCCCeEEEEcCccch
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS 193 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a-------------g~aIyd~m~~~~~pV~Tvv~G~AAS 193 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. ...++..|..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~G 107 (257)
T PRK05862 28 LNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALG 107 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeH
Confidence 677888888888887776655555555411 12343321 1234556778889999999999999
Q ss_pred HhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 022161 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAE 273 (301)
Q Consensus 194 aaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~ 273 (301)
+|.-|+++||. |++.++++|.+-....|. ..+..-. . .+.+..|. ....+++-....++++
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~----~--------~l~~~vG~--~~a~~l~l~g~~~~a~ 168 (257)
T PRK05862 108 GGCELAMMCDI--IIAADTAKFGQPEIKLGV---LPGMGGS----Q--------RLTRAVGK--AKAMDLCLTGRMMDAA 168 (257)
T ss_pred HHHHHHHHCCE--EEEeCCCEEeCchhccCc---CCCccHH----H--------HHHHHhCH--HHHHHHHHhCCccCHH
Confidence 99999999999 999999988763332221 1111100 0 11122222 2233333333467999
Q ss_pred HHHHcCCceeecCC
Q 022161 274 EAKDYGLIDGVVMN 287 (301)
Q Consensus 274 EA~e~GLID~I~~~ 287 (301)
||+++||||+|+..
T Consensus 169 eA~~~Glv~~vv~~ 182 (257)
T PRK05862 169 EAERAGLVSRVVPA 182 (257)
T ss_pred HHHHcCCCCEeeCH
Confidence 99999999999863
No 98
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.46 E-value=4.6e-06 Score=77.32 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=88.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEcCCC-------CcHHH---------------HHHHHHHHHhhCCCeEEEEc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GSVTA---------------GMAIFDTIRHIRPDVSTVCV 188 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPG-------GsV~a---------------g~aIyd~m~~~~~pV~Tvv~ 188 (301)
++.++...+.+.+..++.++..+.|+| .+-| +++.. ...+++.|..+++||++.+.
T Consensus 28 l~~~~~~~l~~al~~~~~d~~v~~vVl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 28 LSLALLEELQNILTQINEEANVRVVIL--TGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEE--ecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 788888899999888877655554444 3333 33321 12345667778899999999
Q ss_pred CccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 022161 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268 (301)
Q Consensus 189 G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~ 268 (301)
|.|..+|.-|+++||. |++.++++|.+-....|.. .+..- ...+ .+..| .....+++-...
T Consensus 106 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~---p~~g~-~~~l-----------~~~vG--~~~a~~l~l~g~ 166 (260)
T PRK07657 106 GIALGGGLELALACDF--RIAAESASLGLTETTLAII---PGAGG-TQRL-----------PRLIG--VGRAKELIYTGR 166 (260)
T ss_pred CEeechHHHHHHhCCE--EEeeCCCEEcCchhccCcC---CCccH-HHHH-----------HHHhC--HHHHHHHHHhCC
Confidence 9999999999999999 9999999987644433321 11110 0001 11112 112233332234
Q ss_pred ccCHHHHHHcCCceeecCC
Q 022161 269 FMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 269 ~lTa~EA~e~GLID~I~~~ 287 (301)
.++++||+++||||+|+..
T Consensus 167 ~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK07657 167 RISAQEAKEIGLVEFVVPA 185 (260)
T ss_pred CCCHHHHHHcCCCCeecCH
Confidence 5799999999999999863
No 99
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.43 E-value=4.3e-06 Score=77.97 Aligned_cols=136 Identities=10% Similarity=0.073 Sum_probs=88.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH------------------HHHHHHHHHhhCCCeEEEEc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV 188 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a------------------g~aIyd~m~~~~~pV~Tvv~ 188 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.. ...+...|..+++||++.+.
T Consensus 30 l~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~ 109 (265)
T PRK05674 30 FNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQ 109 (265)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 677888888888887776655565555211 33444321 01344556677899999999
Q ss_pred CccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 022161 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268 (301)
Q Consensus 189 G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~ 268 (301)
|.|..+|.-|+++||. |++.++++|.+-....| -..+... . .+.+..|. ....+++-...
T Consensus 110 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G---i~p~~~~--~-----------~l~~~vG~--~~a~~l~ltg~ 169 (265)
T PRK05674 110 GAAFGGALGLISCCDM--AIGADDAQFCLSEVRIG---LAPAVIS--P-----------FVVKAIGE--RAARRYALTAE 169 (265)
T ss_pred CEEEechhhHhhhcCE--EEEeCCCEEeCcccccC---CCcchhH--H-----------HHHHHhCH--HHHHHHHHhCc
Confidence 9999999999999999 99999999876332222 2212110 0 01122222 23333333334
Q ss_pred ccCHHHHHHcCCceeecC
Q 022161 269 FMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 269 ~lTa~EA~e~GLID~I~~ 286 (301)
.|+++||+++||||+|+.
T Consensus 170 ~~~a~eA~~~Glv~~vv~ 187 (265)
T PRK05674 170 RFDGRRARELGLLAESYP 187 (265)
T ss_pred ccCHHHHHHCCCcceecC
Confidence 579999999999999986
No 100
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.43 E-value=4.1e-06 Score=80.68 Aligned_cols=136 Identities=17% Similarity=0.234 Sum_probs=94.7
Q ss_pred CcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHH-------HHHHHHHHH---HhhCCCeEEEEcCcc
Q 022161 122 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTI---RHIRPDVSTVCVGLA 191 (301)
Q Consensus 122 ~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~-------ag~aIyd~m---~~~~~pV~Tvv~G~A 191 (301)
+++-..+|.++++-.....+-+...+. -.-+|+-.|||||..+. .+.+|...+ .....|+++++.|-|
T Consensus 126 e~~~~~~G~~~p~g~rKa~Rlm~lA~~--f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeg 203 (322)
T CHL00198 126 ENVLRNFGMPSPGGYRKALRLMKHANK--FGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEG 203 (322)
T ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcc
Confidence 344455677888877777666654443 35699999999997632 234555544 455689999999999
Q ss_pred chHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccC
Q 022161 192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMS 271 (301)
Q Consensus 192 ASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lT 271 (301)
+|+|++.++.+|. .+|.+++.+.+-.|.+. ..++. ++.++..+..+. .-+|
T Consensus 204 gsGGAlal~~aD~--V~m~e~a~~sVisPEg~------------a~Il~--------------~d~~~a~~aA~~-~~it 254 (322)
T CHL00198 204 GSGGALGIGIGDS--IMMLEYAVYTVATPEAC------------AAILW--------------KDSKKSLDAAEA-LKIT 254 (322)
T ss_pred cHHHHHhhhcCCe--EEEeCCeEEEecCHHHH------------HHHHh--------------cchhhHHHHHHH-cCCC
Confidence 9999999998988 99999999998888431 11110 111222222222 3369
Q ss_pred HHHHHHcCCceeecCCc
Q 022161 272 AEEAKDYGLIDGVVMNP 288 (301)
Q Consensus 272 a~EA~e~GLID~I~~~~ 288 (301)
+++-+++|+||+|+..|
T Consensus 255 a~dL~~~giiD~ii~Ep 271 (322)
T CHL00198 255 SEDLKVLGIIDEIIPEP 271 (322)
T ss_pred HHHHHhCCCCeEeccCC
Confidence 99999999999999866
No 101
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.43 E-value=3.7e-06 Score=79.77 Aligned_cols=138 Identities=15% Similarity=0.073 Sum_probs=85.4
Q ss_pred cChhHHHHHHHHHHhhhh-----cCCCCceEEEEc-----CCCCcHHHH----------------HHHHHHHH------h
Q 022161 131 VEDDMANIIVAQLLYLDA-----VDPNKDIIMYLN-----SPGGSVTAG----------------MAIFDTIR------H 178 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~-----~d~~k~I~L~IN-----SPGGsV~ag----------------~aIyd~m~------~ 178 (301)
++.++.+.+.+.+..++. ++..+.|+|.=+ |.|+++... ..+++.+. .
T Consensus 40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (287)
T PRK08788 40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG 119 (287)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 677778888888887765 333444444222 334443321 12233333 4
Q ss_pred hCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 022161 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 258 (301)
Q Consensus 179 ~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e 258 (301)
+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....| -..+..-. ..+.+..| ..
T Consensus 120 ~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lG---l~p~~g~~------------~~l~~~vG--~~ 180 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFN---LFPGMGAY------------SFLARRVG--PK 180 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhC---cCCCchHH------------HHHHHHhh--HH
Confidence 67899999999999999999999999 99999998875332222 11111100 01122222 22
Q ss_pred HHHhhhcCCcccCHHHHHHcCCceeecCC
Q 022161 259 KINEDTDRDFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 259 ~I~~~~~rd~~lTa~EA~e~GLID~I~~~ 287 (301)
...+++-....|+++||+++||||+|+..
T Consensus 181 ~A~ellltG~~l~A~eA~~~GLV~~vv~~ 209 (287)
T PRK08788 181 LAEELILSGKLYTAEELHDMGLVDVLVED 209 (287)
T ss_pred HHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence 33444433456799999999999999863
No 102
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=5.9e-06 Score=76.58 Aligned_cols=137 Identities=19% Similarity=0.147 Sum_probs=88.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHHH-------------------HHHHHHHHhhCCCeEEEE
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------MAIFDTIRHIRPDVSTVC 187 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~ag-------------------~aIyd~m~~~~~pV~Tvv 187 (301)
++.++.+.+.+.+..++ ++..+.|+|.= =|.|+++..- ..++..|..+++||++.+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 106 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAV 106 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67888888888888887 65566555531 1334443210 124556778889999999
Q ss_pred cCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCC
Q 022161 188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRD 267 (301)
Q Consensus 188 ~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd 267 (301)
.|.|..+|..|+++||. |++.++++|.+-.... |-..+..-. . .+.+.-| .....+++-..
T Consensus 107 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~---G~~p~~g~~----~--------~l~~~vG--~~~a~~l~l~g 167 (262)
T PRK08140 107 NGVAAGAGANLALACDI--VLAARSASFIQAFVKI---GLVPDSGGT----W--------FLPRLVG--MARALGLALLG 167 (262)
T ss_pred CCeeehhHHHHHHhCCE--EEecCCCEEecccccc---CCCCCccHH----H--------HHHHHhC--HHHHHHHHHcC
Confidence 99999999999999999 9999999987533222 221111100 0 0111112 12223333333
Q ss_pred cccCHHHHHHcCCceeecCC
Q 022161 268 FFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 268 ~~lTa~EA~e~GLID~I~~~ 287 (301)
..++++||+++||||+|+..
T Consensus 168 ~~~~a~eA~~~Glv~~vv~~ 187 (262)
T PRK08140 168 EKLSAEQAEQWGLIWRVVDD 187 (262)
T ss_pred CCcCHHHHHHcCCccEeeCh
Confidence 45799999999999999863
No 103
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.41 E-value=5.7e-06 Score=75.32 Aligned_cols=133 Identities=20% Similarity=0.217 Sum_probs=83.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEcCCC------CcHH--------------HHHHHHHHHHhhCCCeEEEEcCc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVT--------------AGMAIFDTIRHIRPDVSTVCVGL 190 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPG------GsV~--------------ag~aIyd~m~~~~~pV~Tvv~G~ 190 (301)
++.++.+.+.+.|..++ +..+.|+ |...| +++. ....++..|..+++||++.+.|.
T Consensus 26 l~~~~~~~l~~~l~~~~--~~~~vvv--l~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE--DDRAVVV--ITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh--ccCcEEE--EeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 77788888888887665 2233333 33333 3322 12334556667789999999999
Q ss_pred cchHhHHHHhcCCCCceEecCC-eEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 022161 191 AASMGAFLLSAGTKGKRYSLPN-SRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 269 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~Pn-S~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~ 269 (301)
|..+|..|+++||. |++.++ ++|.+-....|.. ..... .. .+.++.|. ....+++-....
T Consensus 102 a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~Gl~--~~~~~---~~----------~l~~~~g~--~~a~~lll~g~~ 162 (229)
T PRK06213 102 AIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIGMT--MPHAA---IE----------LARDRLTP--SAFQRAVINAEM 162 (229)
T ss_pred eeHHHHHHHHhCCe--eeEecCCcEEECchhhhCCc--CChHH---HH----------HHHHHcCH--HHHHHHHHcCcc
Confidence 99999999999999 999999 8887633322210 11100 00 11122222 233334434456
Q ss_pred cCHHHHHHcCCceeecC
Q 022161 270 MSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 270 lTa~EA~e~GLID~I~~ 286 (301)
++++||+++||||+|+.
T Consensus 163 ~~a~eA~~~Glv~~vv~ 179 (229)
T PRK06213 163 FDPEEAVAAGFLDEVVP 179 (229)
T ss_pred cCHHHHHHCCCceeccC
Confidence 89999999999999985
No 104
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.40 E-value=7.8e-06 Score=75.75 Aligned_cols=143 Identities=16% Similarity=0.048 Sum_probs=88.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHHH-----HH--------HHHHHhhCCCeEEEEcCccch
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-----AI--------FDTIRHIRPDVSTVCVGLAAS 193 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag~-----aI--------yd~m~~~~~pV~Tvv~G~AAS 193 (301)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.... .. ...+..+++||++.+.|.|..
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 106 (254)
T PRK08259 27 VDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVA 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEEEh
Confidence 778888888888888876665555555311 3445543210 00 111234678999999999999
Q ss_pred HhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 022161 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAE 273 (301)
Q Consensus 194 aaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~ 273 (301)
+|.-|+++||. |++.++++|.+-....| -.....- .. .+.+..| .....+++-....|+++
T Consensus 107 gG~~lalacD~--~ia~~~a~f~~pe~~~G---l~p~~g~----~~--------~l~~~iG--~~~a~~lll~g~~~~a~ 167 (254)
T PRK08259 107 GGLELALWCDL--RVAEEDAVFGVFCRRWG---VPLIDGG----TV--------RLPRLIG--HSRAMDLILTGRPVDAD 167 (254)
T ss_pred HHHHHHHhCCE--EEecCCCEecCcccccC---CCCCccH----HH--------HHHHHhC--HHHHHHHHHcCCccCHH
Confidence 99999999999 99999998865332222 1111100 00 0112222 22334444333567999
Q ss_pred HHHHcCCceeecCCccccch
Q 022161 274 EAKDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 274 EA~e~GLID~I~~~~~~al~ 293 (301)
||+++||||+|+.. .+.++
T Consensus 168 eA~~~Glv~~vv~~-~~l~~ 186 (254)
T PRK08259 168 EALAIGLANRVVPK-GQARA 186 (254)
T ss_pred HHHHcCCCCEeeCh-hHHHH
Confidence 99999999999863 34433
No 105
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.39 E-value=6.1e-06 Score=78.29 Aligned_cols=140 Identities=15% Similarity=0.117 Sum_probs=90.8
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHH--------------------------
Q 022161 125 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------------- 169 (301)
Q Consensus 125 I~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag-------------------------- 169 (301)
|.|+-| ++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++...
T Consensus 23 Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (302)
T PRK08272 23 ITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDD 102 (302)
T ss_pred EEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccc
Confidence 555544 778888888888887776655555544321 233443221
Q ss_pred --------------HHHHHHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHH
Q 022161 170 --------------MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQA 235 (301)
Q Consensus 170 --------------~aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~a 235 (301)
..++..|..+++||++.+.|.|..+|..|+++||. |++.+++.|.+-... ..|-.. . .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~pe~~--~gg~~~-~---~ 174 (302)
T PRK08272 103 PWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYPPTR--VWGVPA-T---G 174 (302)
T ss_pred cccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCcchh--cccCCh-H---H
Confidence 12455667788999999999999999999999999 999999988653222 112111 0 0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecC
Q 022161 236 NEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 236 kel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
. +....| .....+++-....++++||+++||||+|+.
T Consensus 175 --~----------~~~~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~ 211 (302)
T PRK08272 175 --M----------WAYRLG--PQRAKRLLFTGDCITGAQAAEWGLAVEAVP 211 (302)
T ss_pred --H----------HHHHhh--HHHHHHHHHcCCccCHHHHHHcCCCceecC
Confidence 0 011122 233344443345679999999999999985
No 106
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.39 E-value=4e-06 Score=77.86 Aligned_cols=150 Identities=19% Similarity=0.142 Sum_probs=93.3
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHHH----------------HH--HHHH
Q 022161 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM----------------AI--FDTI 176 (301)
Q Consensus 124 II~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag~----------------aI--yd~m 176 (301)
+|.|+-| ++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.... .+ ...+
T Consensus 17 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (263)
T PRK07799 17 IVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKG 96 (263)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHH
Confidence 3555544 778888889898888877665665555311 3344443210 01 1113
Q ss_pred HhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022161 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 256 (301)
Q Consensus 177 ~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s 256 (301)
+.+++||++.+.|.|..+|.-|+++||. |++.++++|.+.....|. ..+..- .. .+.+..|
T Consensus 97 ~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~----~~--------~l~r~vG-- 157 (263)
T PRK07799 97 RRLTKPLIAAVEGPAIAGGTEILQGTDI--RVAGESAKFGISEAKWSL---FPMGGS----AV--------RLVRQIP-- 157 (263)
T ss_pred hcCCCCEEEEECCeEeccHHHHHHhCCE--EEecCCCEecCcccccCc---CCCccH----HH--------HHHHHhC--
Confidence 4668899999999999999999999999 999999998764433221 111110 00 0111222
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCceeecCCccccch
Q 022161 257 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 257 ~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~ 293 (301)
.....+++-....|+++||+++||||+|+.. .+.++
T Consensus 158 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~ 193 (263)
T PRK07799 158 YTVACDLLLTGRHITAAEAKEIGLIGHVVPD-GQALD 193 (263)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEecCc-chHHH
Confidence 2333444433456799999999999999863 34443
No 107
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.38 E-value=4.5e-06 Score=77.44 Aligned_cols=135 Identities=19% Similarity=0.127 Sum_probs=85.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHHH----------------HHHHHHHHhhCCCeEEEEcCc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVGL 190 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~ag----------------~aIyd~m~~~~~pV~Tvv~G~ 190 (301)
++.++.+.+.+.|..+ .++..+.|+|.= =|.|+++... ..++..|..+++||++.+.|.
T Consensus 30 l~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~ 108 (260)
T PRK07659 30 LDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGP 108 (260)
T ss_pred CCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Confidence 7778888888888777 344344333321 1233443221 123445666789999999999
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
|..+|.-|+++||. |++.++++|.+.....|.. -+..- . ..+.+. +......+++-....|
T Consensus 109 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~----~--------~~L~~~--vg~~~a~~l~ltg~~~ 169 (260)
T PRK07659 109 AAGLGLSIALTADY--VIADISAKLAMNFIGIGLI---PDGGG----H--------FFLQKR--VGENKAKQIIWEGKKL 169 (260)
T ss_pred eecHHHHHHHhCCE--EEEcCCCEEcCchhhcCCC---CCCch----h--------hhHHHh--cCHHHHHHHHHhCCcc
Confidence 99999999999999 9999999987655433321 11000 0 001111 1223334444344567
Q ss_pred CHHHHHHcCCceeec
Q 022161 271 SAEEAKDYGLIDGVV 285 (301)
Q Consensus 271 Ta~EA~e~GLID~I~ 285 (301)
+++||+++||||+|+
T Consensus 170 ~a~eA~~~Glv~~vv 184 (260)
T PRK07659 170 SATEALDLGLIDEVI 184 (260)
T ss_pred CHHHHHHcCChHHHh
Confidence 999999999999997
No 108
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.37 E-value=4.4e-06 Score=77.24 Aligned_cols=144 Identities=19% Similarity=0.190 Sum_probs=95.2
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCceEEE----EcCCCCcHHHHH----------------HHHHHHHhhCCCeEEEEcC
Q 022161 130 PVEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGM----------------AIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 130 ~Idd~~a~~iiaqL~~L~~~d~~k~I~L~----INSPGGsV~ag~----------------aIyd~m~~~~~pV~Tvv~G 189 (301)
.++.++.+.+.+.|..++.++..+.|+|. .=|-|+++.... .+...|+.+++||++.+.|
T Consensus 28 al~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 107 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNG 107 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcc
Confidence 47888889999999888876555544443 123345554311 2566788889999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCeEEEeecCCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA-QGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~-~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~ 268 (301)
.|..+|.-|+++||. |++.++++|.+.....|. -|.-. . ..+.+..|. ....+++-...
T Consensus 108 ~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iGl~Pg~g~-~---------------~~l~r~~G~--~~a~~l~ltg~ 167 (257)
T COG1024 108 YALGGGLELALACDI--RIAAEDAKFGLPEVNLGLLPGDGG-T---------------QRLPRLLGR--GRAKELLLTGE 167 (257)
T ss_pred eEeechhhhhhcCCe--EEecCCcEecCcccccccCCCCcH-H---------------HHHHHhcCH--HHHHHHHHcCC
Confidence 999999999999999 999999999876654332 11100 0 011111221 12222222234
Q ss_pred ccCHHHHHHcCCceeecCCccccch
Q 022161 269 FMSAEEAKDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 269 ~lTa~EA~e~GLID~I~~~~~~al~ 293 (301)
.++++||+++||||+++....+.++
T Consensus 168 ~~~a~eA~~~Glv~~vv~~~~~l~~ 192 (257)
T COG1024 168 PISAAEALELGLVDEVVPDAEELLE 192 (257)
T ss_pred cCCHHHHHHcCCcCeeeCCHHHHHH
Confidence 5699999999999999876534433
No 109
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.36 E-value=3.2e-06 Score=79.58 Aligned_cols=142 Identities=17% Similarity=0.164 Sum_probs=100.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHHH-------------HHHHHHHHhhCCCeEEEEcCccch
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------MAIFDTIRHIRPDVSTVCVGLAAS 193 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~ag-------------~aIyd~m~~~~~pV~Tvv~G~AAS 193 (301)
++..++.++...+..++.++..+.|+|+= =+-|.++.+. +..++.+..+++||++.+.|.|-.
T Consensus 61 l~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~Alg 140 (290)
T KOG1680|consen 61 LCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFALG 140 (290)
T ss_pred ccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceeec
Confidence 77888899999999999888777666651 1223333222 223566777889999999999999
Q ss_pred HhHHHHhcCCCCceEecCCeEEEeecCCCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA---QGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 194 aaa~Il~aG~kgkR~a~PnS~imIHqp~~g~---~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
+|.-|++.||- |+|.+++.|+.-++..|. +|-..-+ .++ -|. .+..+++-....+
T Consensus 141 GG~ELalmCDi--rva~~~Akfg~~~~~~Gi~p~~GGT~rl--------------~r~----vG~--s~Ale~~ltg~~~ 198 (290)
T KOG1680|consen 141 GGLELALMCDI--RVAGEGAKFGFFEIRMGIIPSWGGTQRL--------------PRI----VGK--SRALEMILTGRRL 198 (290)
T ss_pred cchhhhhhcce--EeccCCCeecccccccCCccCCCchhhH--------------HHH----hCh--HHHHHHHHhcCcc
Confidence 99999999999 999999999987776542 2322211 112 122 2333444455677
Q ss_pred CHHHHHHcCCceeecCCccccchhh
Q 022161 271 SAEEAKDYGLIDGVVMNPHKILQPV 295 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~~~~~al~~~ 295 (301)
+++||++.|||++|+... +++++.
T Consensus 199 ~AqeA~~~GlVn~Vvp~~-~~l~eA 222 (290)
T KOG1680|consen 199 GAQEAKKIGLVNKVVPSG-DALGEA 222 (290)
T ss_pred cHHHHHhCCceeEeecch-hHHHHH
Confidence 999999999999999754 455543
No 110
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.33 E-value=5.2e-06 Score=78.91 Aligned_cols=139 Identities=17% Similarity=0.077 Sum_probs=91.7
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH-------------------H-------
Q 022161 125 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------------G------- 169 (301)
Q Consensus 125 I~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a-------------------g------- 169 (301)
|.|+-| ++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. .
T Consensus 18 ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (298)
T PRK12478 18 ITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTAR 97 (298)
T ss_pred EEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhhh
Confidence 555543 678888888888887776655555555311 23344321 0
Q ss_pred ----HHHHHHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCC-CCCCCCcchHHHHHHHHHHHHH
Q 022161 170 ----MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLG-GAQGGQSDIDLQANEMLHHKAN 244 (301)
Q Consensus 170 ----~aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~-g~~G~~~di~~~akel~~~k~~ 244 (301)
...+..|..+++||++.+.|.|..+|.-|+++||- |++.++++|.+-.... |... . .. +
T Consensus 98 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~l~G~~~--~--~~----~------ 161 (298)
T PRK12478 98 ETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSRMWGAYL--T--GM----W------ 161 (298)
T ss_pred hcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccccccCCc--h--hH----H------
Confidence 11344577788999999999999999999999999 9999999998754431 2211 0 00 0
Q ss_pred HHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecC
Q 022161 245 LNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 245 ~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
..+ +......+++-....++++||+++||||+|+.
T Consensus 162 -----~~~--vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~ 196 (298)
T PRK12478 162 -----LYR--LSLAKVKWHSLTGRPLTGVQAAEAELINEAVP 196 (298)
T ss_pred -----HHH--hhHHHHHHHHHcCCccCHHHHHHcCCcceecC
Confidence 011 12334444544445679999999999999985
No 111
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.31 E-value=1.5e-05 Score=77.97 Aligned_cols=136 Identities=18% Similarity=0.094 Sum_probs=88.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHH------------------HHHHHHHHHhhCCCeEEEE
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVC 187 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~a------------------g~aIyd~m~~~~~pV~Tvv 187 (301)
++.++...+...+..++.++..+.|+|.=. |-|+++.+ ...+++.|..+++||++.|
T Consensus 52 ls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAV 131 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRV 131 (360)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 788888899999888876655555554221 22343321 1234566777889999999
Q ss_pred cCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhh-hcC
Q 022161 188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED-TDR 266 (301)
Q Consensus 188 ~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~-~~r 266 (301)
.|.|..+|.-|+++||. |++.++++|.+-....|. ..+..-. . .+.+..|. .....+ +.+
T Consensus 132 nG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlGl---~P~~Ggt--~----------rLprlvG~--~rA~~llltG 192 (360)
T TIGR03200 132 NGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHGS---APIGGAT--D----------FLPLMIGC--EQAMVSGTLC 192 (360)
T ss_pred CCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccCC---CCCccHH--H----------HHHHhhCH--HHHHHHHHhC
Confidence 99999999999999999 999999998874443321 1111100 0 01111121 122222 333
Q ss_pred CcccCHHHHHHcCCceeecC
Q 022161 267 DFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 267 d~~lTa~EA~e~GLID~I~~ 286 (301)
..++|+||+++||||+|+.
T Consensus 193 -e~~sA~EA~~~GLVd~VVp 211 (360)
T TIGR03200 193 -EPWSAHKAKRLGIIMDVVP 211 (360)
T ss_pred -CcCcHHHHHHcCChheecC
Confidence 3569999999999999976
No 112
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.25 E-value=9.9e-06 Score=83.29 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=88.6
Q ss_pred cChhHHHHHHHHHHhhh-hcCCCCceEEEEc-----CCCCcHHHH---------------H----HHHHHHHhhCCCeEE
Q 022161 131 VEDDMANIIVAQLLYLD-AVDPNKDIIMYLN-----SPGGSVTAG---------------M----AIFDTIRHIRPDVST 185 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~-~~d~~k~I~L~IN-----SPGGsV~ag---------------~----aIyd~m~~~~~pV~T 185 (301)
++.++.+.+.+.|..++ .++..+.|+|.=+ |.|+++... . .+.+.|+.+++||++
T Consensus 49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA 128 (550)
T PRK08184 49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA 128 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67788888888888877 4445555555432 445554321 0 144566778899999
Q ss_pred EEcCccchHhHHHHhcCCCCceEecCC--eEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhh
Q 022161 186 VCVGLAASMGAFLLSAGTKGKRYSLPN--SRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED 263 (301)
Q Consensus 186 vv~G~AASaaa~Il~aG~kgkR~a~Pn--S~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~ 263 (301)
.+.|.|..+|..|+++||. |++.++ ++|.+-... ..|-..+..- .. .+...+........++
T Consensus 129 AVnG~a~GGG~~LALacD~--rIas~~~~a~fg~pEv~--~~Gl~P~~gg----~~--------rl~~~~~vg~~~A~~l 192 (550)
T PRK08184 129 AVNGTCAGGGYELALACDE--IVLVDDRSSAVSLPEVP--LLGVLPGTGG----LT--------RVTDKRKVRRDLADIF 192 (550)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchh--ccccCCCcch----HH--------HhhhhhhcCHHHHHHH
Confidence 9999999999999999999 999987 676653221 1111111110 00 0111122333344444
Q ss_pred hcCCcccCHHHHHHcCCceeecC
Q 022161 264 TDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 264 ~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
+-....|+++||+++||||+|+.
T Consensus 193 lltG~~i~AeeA~~~GLVd~vv~ 215 (550)
T PRK08184 193 CTIEEGVRGKRAVDWRLVDEVVK 215 (550)
T ss_pred HHhCCcccHHHHHHcCCccEeeC
Confidence 33334679999999999999986
No 113
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.24 E-value=1.4e-05 Score=83.82 Aligned_cols=130 Identities=20% Similarity=0.324 Sum_probs=87.8
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHH-------HHHHHHHHHH---hhCCCeEEEEcCccchHhHH
Q 022161 128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTIR---HIRPDVSTVCVGLAASMGAF 197 (301)
Q Consensus 128 ~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~-------ag~aIyd~m~---~~~~pV~Tvv~G~AASaaa~ 197 (301)
+|.++++-++...+-+..++. -.-+|+-.|||||..+. .+.+|+..+. ....|+++++.|-|+|+|++
T Consensus 220 fG~~~peGyRKAlRlmkLAek--fgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAl 297 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGAL 297 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHH
Confidence 444555555665555544433 35699999999997652 3445665555 45689999999999999999
Q ss_pred HHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHH
Q 022161 198 LLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKD 277 (301)
Q Consensus 198 Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e 277 (301)
.++.|+. .+|.+++.+.+-.|.+. ..+ +-+.. ....+..+. .-+|+++-++
T Consensus 298 A~g~aD~--VlMle~A~~sVisPEga------------AsI----------Lwkd~-~~A~eAAe~----lkiTa~dL~~ 348 (762)
T PLN03229 298 AIGCANK--LLMLENAVFYVASPEAC------------AAI----------LWKSA-KAAPKAAEK----LRITAQELCR 348 (762)
T ss_pred HhhcCCE--EEEecCCeEEecCHHHH------------HHH----------HhcCc-ccHHHHHHH----cCCCHHHHHh
Confidence 9999998 99999999888777331 111 10111 111112111 3369999999
Q ss_pred cCCceeecCCc
Q 022161 278 YGLIDGVVMNP 288 (301)
Q Consensus 278 ~GLID~I~~~~ 288 (301)
+|+||+|+..|
T Consensus 349 lGiiD~IIpEp 359 (762)
T PLN03229 349 LQIADGIIPEP 359 (762)
T ss_pred CCCCeeeccCC
Confidence 99999999866
No 114
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.21 E-value=2.2e-05 Score=77.93 Aligned_cols=144 Identities=13% Similarity=0.047 Sum_probs=93.7
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHHH----------------H---HHHH
Q 022161 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM----------------A---IFDT 175 (301)
Q Consensus 124 II~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag~----------------a---Iyd~ 175 (301)
+|.|+=| ++.++...+.+.|..++.++..+.|+|.=+ |-||++.+-. . +...
T Consensus 49 ~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (401)
T PLN02157 49 TAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYL 128 (401)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence 4555555 788889999999988877666665555422 4567664210 1 2234
Q ss_pred HHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCC
Q 022161 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQ 255 (301)
Q Consensus 176 m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~ 255 (301)
|..+++||++.+.|.|..+|.-|+++|+. |++.++++|.+-....| -..+..-. .. +.+..|.
T Consensus 129 i~~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iG---l~Pd~G~s--~~----------L~rl~G~ 191 (401)
T PLN02157 129 LGTYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIG---FHPDAGAS--FN----------LSHLPGR 191 (401)
T ss_pred HHhCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcC---CCCCccHH--HH----------HHHhhhH
Confidence 67788999999999999999999999999 99999999876443322 22222110 00 1111221
Q ss_pred CHHHHHhhhcCCcccCHHHHHHcCCceeecCC
Q 022161 256 TLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 256 s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~ 287 (301)
.-..++-....++++||+++||||+++..
T Consensus 192 ---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~ 220 (401)
T PLN02157 192 ---LGEYLGLTGLKLSGAEMLACGLATHYIRS 220 (401)
T ss_pred ---HHHHHHHcCCcCCHHHHHHcCCceEEeCH
Confidence 11122222356799999999999999853
No 115
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.15 E-value=2.2e-05 Score=76.06 Aligned_cols=132 Identities=19% Similarity=0.131 Sum_probs=84.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHHH-------------------HHHHHHHHhhCCCeEEE
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG-------------------MAIFDTIRHIRPDVSTV 186 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~ag-------------------~aIyd~m~~~~~pV~Tv 186 (301)
++.++.+.+.+.+..++.++..+.|+|.=. |-|+++..- ..++..|..+++||++.
T Consensus 27 l~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 106 (342)
T PRK05617 27 LSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIAL 106 (342)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 778888888888877766554444444211 123443210 12345667788999999
Q ss_pred EcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhh
Q 022161 187 CVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA---QGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED 263 (301)
Q Consensus 187 v~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~---~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~ 263 (301)
+.|.|..+|.-|+++||. |++.++++|.+-....|. .|...-+ .+.-| . ...++
T Consensus 107 VnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~P~~g~~~~L------------------~r~~g--~-~a~~l 163 (342)
T PRK05617 107 MDGIVMGGGVGISAHGSH--RIVTERTKMAMPETGIGFFPDVGGTYFL------------------SRAPG--A-LGTYL 163 (342)
T ss_pred EcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccccCcCCCccceeEe------------------hhccc--H-HHHHH
Confidence 999999999999999999 999999998864443332 1211111 11111 0 11222
Q ss_pred -hcCCcccCHHHHHHcCCceeecC
Q 022161 264 -TDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 264 -~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
+.+ ..++++||+++||||+|+.
T Consensus 164 lltG-~~i~A~eA~~~GLv~~vv~ 186 (342)
T PRK05617 164 ALTG-ARISAADALYAGLADHFVP 186 (342)
T ss_pred HHcC-CCCCHHHHHHcCCcceecC
Confidence 334 3469999999999999986
No 116
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.13 E-value=3.6e-05 Score=81.19 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=90.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHH----------------HHHHHHHHHhhCCCeEEEEcC
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~a----------------g~aIyd~m~~~~~pV~Tvv~G 189 (301)
++.++.+.+.+.|..++.++..+.|+|.-. |-|+++.. ...++..|..+++||++.+.|
T Consensus 26 l~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG 105 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHG 105 (699)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 678888888888888876655555544321 33444432 133566788889999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCC--eEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCC
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPN--SRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRD 267 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~Pn--S~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd 267 (301)
.|.++|.-|+++||. |+|.++ ++|.+.....|.. .+..- . ..+.+..| .....+++-..
T Consensus 106 ~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lGl~---p~~g~----~--------~~L~r~vG--~~~A~~llltG 166 (699)
T TIGR02440 106 ACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLGLL---PGSGG----T--------QRLPRLIG--VSTALDMILTG 166 (699)
T ss_pred EeecHHHHHHHhCCE--EEEcCCCCcEEechhhcccCC---CCccH----H--------HHHHHhcC--HHHHHHHHHcC
Confidence 999999999999999 999987 5665544333311 11000 0 00111122 12223344344
Q ss_pred cccCHHHHHHcCCceeecCCccccch
Q 022161 268 FFMSAEEAKDYGLIDGVVMNPHKILQ 293 (301)
Q Consensus 268 ~~lTa~EA~e~GLID~I~~~~~~al~ 293 (301)
..++++||+++||||+|+.. ++.++
T Consensus 167 ~~~~a~eA~~~GLV~~vv~~-~~l~~ 191 (699)
T TIGR02440 167 KQLRAKQALKLGLVDDVVPQ-SILLD 191 (699)
T ss_pred CcCCHHHHHhCCCCcEecCh-hHHHH
Confidence 56799999999999999853 34443
No 117
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.12 E-value=5.7e-05 Score=75.13 Aligned_cols=147 Identities=13% Similarity=0.017 Sum_probs=95.4
Q ss_pred CcEEEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHH------------H-------HHH
Q 022161 122 HRIIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------M-------AIF 173 (301)
Q Consensus 122 ~rII~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag------------~-------aIy 173 (301)
-++|.|+-+ ++.++.+.+.+.|..++.++..+.|+|.=+ |-||++.+. . .+.
T Consensus 52 ~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~ 131 (407)
T PLN02851 52 SRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFV 131 (407)
T ss_pred EEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 357788777 888999999999998887766665555422 345665321 1 112
Q ss_pred HHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 022161 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHT 253 (301)
Q Consensus 174 d~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~t 253 (301)
..|..+++||++.+.|.|..+|.-|+++|+. |++.++++|.+-....|. ..|+.-.. .+. +..
T Consensus 132 ~~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iGl---~PdvG~s~-~L~-----------rl~ 194 (407)
T PLN02851 132 YLQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMGF---HPDAGASY-YLS-----------RLP 194 (407)
T ss_pred HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccCC---CCCccHHH-HHH-----------Hhc
Confidence 2345678999999999999999999999999 999999988764433322 22221100 011 111
Q ss_pred CCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCc
Q 022161 254 GQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNP 288 (301)
Q Consensus 254 G~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~ 288 (301)
|..-..+ .+.+ ..++++||+++||+|.++.+.
T Consensus 195 g~~g~~L--~LTG-~~i~a~eA~~~GLa~~~v~~~ 226 (407)
T PLN02851 195 GYLGEYL--ALTG-QKLNGVEMIACGLATHYCLNA 226 (407)
T ss_pred CHHHHHH--HHhC-CcCCHHHHHHCCCceeecCHh
Confidence 1110111 2334 456999999999999998533
No 118
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.11 E-value=4.7e-05 Score=80.48 Aligned_cols=138 Identities=20% Similarity=0.186 Sum_probs=89.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH------------------HHHHHHHHHhhCCCeEEEEc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV 188 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a------------------g~aIyd~m~~~~~pV~Tvv~ 188 (301)
++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++.. ...+++.|..+++||++.+.
T Consensus 31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 110 (715)
T PRK11730 31 LDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAIN 110 (715)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 678888888888888776655555555321 33444422 11244567778899999999
Q ss_pred CccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 022161 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 268 (301)
Q Consensus 189 G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~ 268 (301)
|.|..+|.-|+++||. |++.++++|.+-....|. .-+..-. . .+.+..| .....+++-...
T Consensus 111 G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lGl---~p~~g~~----~--------~L~rlvG--~~~A~~llltG~ 171 (715)
T PRK11730 111 GYALGGGCECVLATDY--RVASPDARIGLPETKLGI---MPGFGGT----V--------RLPRLIG--ADNALEWIAAGK 171 (715)
T ss_pred CEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcCC---CCCchHH----H--------HHHHhcC--HHHHHHHHHcCC
Confidence 9999999999999999 999999998764433221 1111100 0 0112222 223334443345
Q ss_pred ccCHHHHHHcCCceeecCC
Q 022161 269 FMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 269 ~lTa~EA~e~GLID~I~~~ 287 (301)
.++++||+++||||+|+..
T Consensus 172 ~~~A~eA~~~GLv~~vv~~ 190 (715)
T PRK11730 172 DVRAEDALKVGAVDAVVAP 190 (715)
T ss_pred cCCHHHHHHCCCCeEecCH
Confidence 6799999999999999853
No 119
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.10 E-value=5.5e-05 Score=74.37 Aligned_cols=143 Identities=18% Similarity=0.144 Sum_probs=91.2
Q ss_pred cEEEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEE----cCCCCcHHHH----------H-------HHHHHH
Q 022161 123 RIIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------M-------AIFDTI 176 (301)
Q Consensus 123 rII~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~I----NSPGGsV~ag----------~-------aIyd~m 176 (301)
.+|.|+-+ ++.++...+.+.|..++.++..+.|+|.= =|-||++... . .+...|
T Consensus 22 ~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i 101 (379)
T PLN02874 22 RVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHI 101 (379)
T ss_pred EEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 34667665 78888899999998887765555554421 1234544321 0 112346
Q ss_pred HhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022161 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 256 (301)
Q Consensus 177 ~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s 256 (301)
..+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....| -..+..-. .. +.+..|.
T Consensus 102 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iG---l~p~~g~~--~~----------L~rl~g~- 163 (379)
T PLN02874 102 HTYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVG---FHTDCGFS--YI----------LSRLPGH- 163 (379)
T ss_pred HhCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccC---cCCChhHH--HH----------HHhhhHH-
Confidence 6778999999999999999999999999 99999999876443332 22222110 00 1111110
Q ss_pred HHHHHh-hhcCCcccCHHHHHHcCCceeecC
Q 022161 257 LEKINE-DTDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 257 ~e~I~~-~~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
.-.+ .+.+ ..++++||+++||||+|+.
T Consensus 164 --~a~~l~ltG-~~i~a~eA~~~GLv~~vv~ 191 (379)
T PLN02874 164 --LGEYLALTG-ARLNGKEMVACGLATHFVP 191 (379)
T ss_pred --HHHHHHHcC-CcccHHHHHHcCCccEEeC
Confidence 0112 2344 4569999999999999986
No 120
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.10 E-value=8.5e-05 Score=68.98 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=84.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCc----------HHHHHHHHHHHHhh---CCCeEEEEcCccchHhHH
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGS----------VTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAF 197 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGs----------V~ag~aIyd~m~~~---~~pV~Tvv~G~AASaaa~ 197 (301)
++-+.+......+...-..+...+|+..+|+||=. ..++-.+.+.+... +.|+++++.|.+.|+|++
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 55444455444444432223567999999999943 34444444455544 489999999999999888
Q ss_pred HHhc-CCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcC--CcccCHHH
Q 022161 198 LLSA-GTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDR--DFFMSAEE 274 (301)
Q Consensus 198 Il~a-G~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~r--d~~lTa~E 274 (301)
.+.. ++. .+|.|++.+.+..|.+. -.+ +.++.++..+..+. ..-.+++.
T Consensus 125 amg~~ad~--v~Alp~A~i~vm~~e~a------------a~I--------------~~~~~~~~~e~a~~~~~~a~~~~~ 176 (238)
T TIGR03134 125 AHGLQADR--IIALPGAMVHVMDLESM------------ARV--------------TKRSVEELEALAKSSPVFAPGIEN 176 (238)
T ss_pred HHccCcCe--EEEcCCcEEEecCHHHH------------HHH--------------HccCHhHHHHHHHhhhhhccCHHH
Confidence 7753 565 99999999987666321 111 11233333333221 23457889
Q ss_pred HHHcCCceeecCCcc
Q 022161 275 AKDYGLIDGVVMNPH 289 (301)
Q Consensus 275 A~e~GLID~I~~~~~ 289 (301)
+.+.|+||+|++.+.
T Consensus 177 ~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 177 FVKLGGVHALLDVAD 191 (238)
T ss_pred HHhCCCccEEeCCCC
Confidence 999999999998554
No 121
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.09 E-value=7e-05 Score=79.21 Aligned_cols=144 Identities=18% Similarity=0.169 Sum_probs=93.8
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHH------------------HHHHHHHH
Q 022161 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTI 176 (301)
Q Consensus 124 II~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~a------------------g~aIyd~m 176 (301)
+|.|+-+ ++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. +..+++.|
T Consensus 19 ~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (714)
T TIGR02437 19 ELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKL 98 (714)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 3555544 678888888888888877665665555321 23344321 23466778
Q ss_pred HhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022161 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 256 (301)
Q Consensus 177 ~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s 256 (301)
..+++||++.+.|.|.++|.-|+++||. |++.++++|.+-....|.. ....-. .. +.+..|..
T Consensus 99 ~~~pkPvIAai~G~alGGGleLalacD~--ria~~~a~fglPEv~lGl~---Pg~Ggt----~r--------L~rliG~~ 161 (714)
T TIGR02437 99 EDLPVPTVAAINGIALGGGCECVLATDF--RIADDTAKIGLPETKLGIM---PGFGGT----VR--------LPRVIGAD 161 (714)
T ss_pred HhCCCCEEEEECCeeecHHHHHHHhCCE--EEEeCCCEEecchhhcCCC---CCccHH----HH--------HHHHhCHH
Confidence 8889999999999999999999999999 9999999998744332211 111000 00 11112222
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCceeecC
Q 022161 257 LEKINEDTDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 257 ~e~I~~~~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
...+++-....++++||+++||||+|+.
T Consensus 162 --~A~~llltG~~~~A~eA~~~GLvd~vv~ 189 (714)
T TIGR02437 162 --NALEWIASGKENRAEDALKVGAVDAVVT 189 (714)
T ss_pred --HHHHHHHcCCcCCHHHHHHCCCCcEeeC
Confidence 2223333334579999999999999985
No 122
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.09 E-value=5.5e-05 Score=74.57 Aligned_cols=144 Identities=18% Similarity=0.198 Sum_probs=92.2
Q ss_pred cEEEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEc----CCCCcHHHHH-------------------HHHH
Q 022161 123 RIIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-------------------AIFD 174 (301)
Q Consensus 123 rII~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN----SPGGsV~ag~-------------------aIyd 174 (301)
.+|.|+-| ++.++.+.+.+.|..++.++..+.|+|.=+ |-||++.... .+..
T Consensus 20 ~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~ 99 (381)
T PLN02988 20 RILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNY 99 (381)
T ss_pred EEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHH
Confidence 34666655 788899999999998877665655555321 3356654311 1223
Q ss_pred HHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Q 022161 175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTG 254 (301)
Q Consensus 175 ~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG 254 (301)
.|..+++||++.+.|.|..+|.-|+++|+. |++.++++|.+-....| -..+..-. --+.+ +....+
T Consensus 100 ~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iG---l~Pd~G~s-~~L~r----l~G~~~---- 165 (381)
T PLN02988 100 VMATYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALG---LFPDVGAS-YFLSR----LPGFFG---- 165 (381)
T ss_pred HHHHCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcC---cCCCccHH-HHHHH----HHHHHH----
Confidence 566788999999999999999999999999 99999998865333222 22222110 00111 111111
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCceeecC
Q 022161 255 QTLEKINEDTDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 255 ~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
..+ .+.+ ..++++||++.||+|+++.
T Consensus 166 ---~~l--~LTG-~~i~a~eA~~~GLv~~vv~ 191 (381)
T PLN02988 166 ---EYV--GLTG-ARLDGAEMLACGLATHFVP 191 (381)
T ss_pred ---HHH--HHcC-CCCCHHHHHHcCCceEecC
Confidence 011 2233 4569999999999999985
No 123
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.09 E-value=3.6e-05 Score=79.15 Aligned_cols=140 Identities=14% Similarity=0.082 Sum_probs=85.4
Q ss_pred cChhHHHHHHHHHHhhh-hcCCCCceEEEEc-----CCCCcHHHH-------------------HHHHHHHHhhCCCeEE
Q 022161 131 VEDDMANIIVAQLLYLD-AVDPNKDIIMYLN-----SPGGSVTAG-------------------MAIFDTIRHIRPDVST 185 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~-~~d~~k~I~L~IN-----SPGGsV~ag-------------------~aIyd~m~~~~~pV~T 185 (301)
++.++.+.+.+.|..++ .++..+.|+|.-. |.|+++... ..+.+.|+.+++||++
T Consensus 45 l~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIA 124 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLA 124 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 66778888888888776 4444555555432 456654321 1244566778899999
Q ss_pred EEcCccchHhHHHHhcCCCCceEecCC--eEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhh
Q 022161 186 VCVGLAASMGAFLLSAGTKGKRYSLPN--SRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED 263 (301)
Q Consensus 186 vv~G~AASaaa~Il~aG~kgkR~a~Pn--S~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~ 263 (301)
.+.|.|..+|.-|+++||. |++.++ ++|.+ |.....|-..+..- +.. +............++
T Consensus 125 AVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~--pEv~~lGl~P~~gg----~~~--------l~~~~~vg~~~A~~l 188 (546)
T TIGR03222 125 AVNGTCAGGGYELALACDE--IMLVDDRSSSVSL--PEVPLLGVLPGTGG----LTR--------VTDKRRVRRDHADIF 188 (546)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEc--cchhccCcCCccch----hhh--------ccccchhCHHHHHHH
Confidence 9999999999999999999 999986 56654 32210111111110 000 000011122223333
Q ss_pred hcCCcccCHHHHHHcCCceeecC
Q 022161 264 TDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 264 ~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
+-...-++++||+++||||+|+.
T Consensus 189 lltG~~i~A~eA~~~GLV~~vv~ 211 (546)
T TIGR03222 189 CTIEEGVRGKRAKEWRLVDEVVK 211 (546)
T ss_pred HHcCCCccHHHHHHcCCceEEeC
Confidence 22223569999999999999986
No 124
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.06 E-value=8e-05 Score=78.64 Aligned_cols=138 Identities=18% Similarity=0.147 Sum_probs=88.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHH----------------HHHHHHHHHhhCCCeEEEEcC
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG 189 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~a----------------g~aIyd~m~~~~~pV~Tvv~G 189 (301)
++.++.+.+.+.|..++.++..+.|+|.=. |-|+++.. ...+++.|..+++||++.+.|
T Consensus 31 l~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 110 (708)
T PRK11154 31 LKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHG 110 (708)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 677888888888888876554444444311 23344321 123567788889999999999
Q ss_pred ccchHhHHHHhcCCCCceEecCCe--EEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCC
Q 022161 190 LAASMGAFLLSAGTKGKRYSLPNS--RIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRD 267 (301)
Q Consensus 190 ~AASaaa~Il~aG~kgkR~a~PnS--~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd 267 (301)
.|..+|.-|+++||. |++.+++ +|.+.....|.. .+..- . ..+.+..|. ....+++-..
T Consensus 111 ~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lGl~---p~~gg----~--------~~L~r~vG~--~~A~~llltG 171 (708)
T PRK11154 111 ACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLGLL---PGSGG----T--------QRLPRLIGV--STALDMILTG 171 (708)
T ss_pred eeechHHHHHHhCCE--EEEeCCCCceEeCccccCCCC---CCccH----H--------hHHHhhcCH--HHHHHHHHhC
Confidence 999999999999999 9999975 666554433321 11100 0 011122222 2333444344
Q ss_pred cccCHHHHHHcCCceeecCC
Q 022161 268 FFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 268 ~~lTa~EA~e~GLID~I~~~ 287 (301)
..++++||+++||||+|+..
T Consensus 172 ~~i~a~eA~~~GLv~~vv~~ 191 (708)
T PRK11154 172 KQLRAKQALKLGLVDDVVPH 191 (708)
T ss_pred CcCCHHHHHHCCCCcEecCh
Confidence 55799999999999999863
No 125
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.04 E-value=0.0001 Score=78.22 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=87.2
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEcCC------CCcHHH----------------HHHHHHHHHhhCCCeEEEEc
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSVTA----------------GMAIFDTIRHIRPDVSTVCV 188 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSP------GGsV~a----------------g~aIyd~m~~~~~pV~Tvv~ 188 (301)
++.++.+.+.+.|..++.++..+.|+| +..- |+++.. ...+++.|..+++||++.+.
T Consensus 38 l~~~~~~~L~~al~~~~~d~~vr~vVv-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~ 116 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTNEAIKSAVL-ISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAIS 116 (737)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCEEEEE-EECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 567778888888887776554443333 2333 344321 23466778888999999999
Q ss_pred CccchHhHHHHhcCCCCceEecCCe--EEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcC
Q 022161 189 GLAASMGAFLLSAGTKGKRYSLPNS--RIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDR 266 (301)
Q Consensus 189 G~AASaaa~Il~aG~kgkR~a~PnS--~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~r 266 (301)
|.|..+|.-|+++||. |++.+++ +|.+.....|.. .+..-. . .+.+..|. ....+++-.
T Consensus 117 G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~lGl~---Pg~Ggt----~--------rLprliG~--~~A~~l~lt 177 (737)
T TIGR02441 117 GSCLGGGLELALACHY--RIATKDRKTLLGLPEVMLGLL---PGAGGT----Q--------RLPKLTGV--PAALDMMLT 177 (737)
T ss_pred CEeecHHHHHHHhCCE--EEEcCCCCCeEecchhhhCCC---CCccHh----h--------hHHHhhCH--HHHHHHHHc
Confidence 9999999999999999 9999985 566544322211 000000 0 01111222 222333334
Q ss_pred CcccCHHHHHHcCCceeecCC
Q 022161 267 DFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 267 d~~lTa~EA~e~GLID~I~~~ 287 (301)
...++++||+++||||+|+..
T Consensus 178 G~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 178 GKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred CCcCCHHHHHHCCCCeEecCC
Confidence 456799999999999999975
No 126
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.79 E-value=0.00052 Score=70.71 Aligned_cols=139 Identities=13% Similarity=0.020 Sum_probs=86.8
Q ss_pred cChhHHHHHHHHHHhhhhc-CCCCceEEEEc-----CCCCcHH-----------HH----HHHHHHHHhhCCCeEEEE-c
Q 022161 131 VEDDMANIIVAQLLYLDAV-DPNKDIIMYLN-----SPGGSVT-----------AG----MAIFDTIRHIRPDVSTVC-V 188 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~-d~~k~I~L~IN-----SPGGsV~-----------ag----~aIyd~m~~~~~pV~Tvv-~ 188 (301)
++.++...+.+.+..++.+ +..+.|+|.=. |-|+++. .. ..+++.|..+++||++.+ .
T Consensus 295 l~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~ 374 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEP 374 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 6677788888888877644 33333333211 2223321 11 124567778899999999 8
Q ss_pred CccchHh-HHHHhcCCCCceEe-------cCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhh-CCCHHH
Q 022161 189 GLAASMG-AFLLSAGTKGKRYS-------LPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHT-GQTLEK 259 (301)
Q Consensus 189 G~AASaa-a~Il~aG~kgkR~a-------~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~t-G~s~e~ 259 (301)
|.|..+| .-|+++||- |++ .++++|.+-....|..-...-. ..+.+.. |.+...
T Consensus 375 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~---------------~~L~~~v~G~~~a~ 437 (546)
T TIGR03222 375 GSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGLYPMVNGL---------------SRLATRFYAEPAPV 437 (546)
T ss_pred CeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCccccccCCCcCcH---------------HHHHHHhcCchhHH
Confidence 9999999 999999999 999 8999987655443321110000 0123333 443332
Q ss_pred HHhh-hcCCcccCHHHHHHcCCceeecCC
Q 022161 260 INED-TDRDFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 260 I~~~-~~rd~~lTa~EA~e~GLID~I~~~ 287 (301)
-.++ +.+ ..++++||+++|||++|...
T Consensus 438 ~~~~~ltg-~~i~A~eA~~~Glv~~vv~~ 465 (546)
T TIGR03222 438 AAVRDKIG-QALDAEEAERLGLVTAAPDD 465 (546)
T ss_pred HHHHHHhC-CCCCHHHHHHcCCcccccCc
Confidence 2222 333 45799999999999999753
No 127
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.73 E-value=0.00051 Score=65.08 Aligned_cols=139 Identities=15% Similarity=0.092 Sum_probs=97.1
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCC---CCceEEEEcCCCCcHHHHH-------HHHHHHHhhC--CCeEEEEcCc--c
Q 022161 126 RCGGPVEDDMANIIVAQLLYLDAVDP---NKDIIMYLNSPGGSVTAGM-------AIFDTIRHIR--PDVSTVCVGL--A 191 (301)
Q Consensus 126 ~L~G~Idd~~a~~iiaqL~~L~~~d~---~k~I~L~INSPGGsV~ag~-------aIyd~m~~~~--~pV~Tvv~G~--A 191 (301)
|.+|.+.+.....+...+..+..++. .-++++.++|.|+....+. .|+..+...+ .|+++++.|- |
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc 149 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGC 149 (274)
T ss_pred ccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCc
Confidence 56888988888888887776544222 2489999999999876644 3343333333 6999999999 8
Q ss_pred chHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCC---CHHH---HHhhhc
Q 022161 192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQ---TLEK---INEDTD 265 (301)
Q Consensus 192 ASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~---s~e~---I~~~~~ 265 (301)
+.+++++++.+|. .+|.+++++++-.|.. +...+|. +.++ +++
T Consensus 150 ~GG~a~~a~l~D~--vim~~~a~i~~aGP~V--------------------------Ie~~~G~e~~~~~d~~l~~~--- 198 (274)
T TIGR03133 150 FGGMGIAAGLCSY--LIMTEEGRLGLSGPEV--------------------------IEQEAGVEEFDSRDRALVWR--- 198 (274)
T ss_pred chHHHHHHhcCCE--EEEeCCcEEeccCHHH--------------------------HHHhcCCCccCHHHhccccc---
Confidence 8999999999998 9999999999877621 1112232 1111 111
Q ss_pred CCcccCHHHHHHcCCceeecCCccccchhhHhh
Q 022161 266 RDFFMSAEEAKDYGLIDGVVMNPHKILQPVAAA 298 (301)
Q Consensus 266 rd~~lTa~EA~e~GLID~I~~~~~~al~~~~~~ 298 (301)
.+.++.....|++|.++++..++|+..+.+
T Consensus 199 ---~lGG~~~~~sG~~D~~v~dd~~a~~~~~~~ 228 (274)
T TIGR03133 199 ---TTGGKHRFLSGDADVLVEDDVDAFRAAVIA 228 (274)
T ss_pred ---ccchHhHhhcccceEEeCCHHHHHHHHHHH
Confidence 235556677899999999888888776654
No 128
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.66 E-value=0.00037 Score=71.28 Aligned_cols=91 Identities=19% Similarity=0.297 Sum_probs=71.4
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCC----------cHHHHHHHHHHHHhhCCCeEEEEcCccchHhHH
Q 022161 128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG----------SVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF 197 (301)
Q Consensus 128 ~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGG----------sV~ag~aIyd~m~~~~~pV~Tvv~G~AASaaa~ 197 (301)
+|.+++..++.+.+.+...+. -.-+|+..+||||= .+..+-.+...+.....|.++++.|-|+++|++
T Consensus 328 ~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 577888888888777765543 35799999999994 355666677777777899999999999998777
Q ss_pred HHhc----CCCCceEecCCeEEEeecCCC
Q 022161 198 LLSA----GTKGKRYSLPNSRIMIHQPLG 222 (301)
Q Consensus 198 Il~a----G~kgkR~a~PnS~imIHqp~~ 222 (301)
.+++ ++. .+|.|++.+.+-.|.+
T Consensus 406 am~~~~~~~d~--~~a~p~a~~~v~~pe~ 432 (512)
T TIGR01117 406 AMCSKHLGADQ--VYAWPTAEIAVMGPAG 432 (512)
T ss_pred HhccccCCCCE--EEEcCCCeEeecCHHH
Confidence 7654 555 8999999999888754
No 129
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.62 E-value=0.0005 Score=70.86 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=83.8
Q ss_pred cChhHHHHHHHHHHhhhh-cCCCCceEEEEc-----CCCCcHH-----------HH----HHHHHHHHhhCCCeEEEEc-
Q 022161 131 VEDDMANIIVAQLLYLDA-VDPNKDIIMYLN-----SPGGSVT-----------AG----MAIFDTIRHIRPDVSTVCV- 188 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~-~d~~k~I~L~IN-----SPGGsV~-----------ag----~aIyd~m~~~~~pV~Tvv~- 188 (301)
++.++...+.+.|..++. ++..+.|+|.=. |-|+++. .. ..++..|..+++||++.+.
T Consensus 299 l~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~ 378 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEP 378 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 567777888888877764 333444444321 2234421 10 1234556677899999997
Q ss_pred CccchHh-HHHHhcCCCCceEec-------CCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHh-hCCCHHH
Q 022161 189 GLAASMG-AFLLSAGTKGKRYSL-------PNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYH-TGQTLEK 259 (301)
Q Consensus 189 G~AASaa-a~Il~aG~kgkR~a~-------PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~-tG~s~e~ 259 (301)
|.|..+| .-|+++||. |++. ++++|.+-....|..-...-.. .+.++ -|.....
T Consensus 379 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~---------------~L~r~~vG~~~A~ 441 (550)
T PRK08184 379 GSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFGLYPMVNGLS---------------RLARRFYGEPDPL 441 (550)
T ss_pred CceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECccccccCCCCCCcHH---------------HhHHHhcChHHHH
Confidence 9999999 999999999 9999 9999886554433211000000 01122 1332211
Q ss_pred HHh-hhcCCcccCHHHHHHcCCceeecC
Q 022161 260 INE-DTDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 260 I~~-~~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
-.. ++.+ ..++++||+++||||+|+.
T Consensus 442 ~~~l~~tg-~~i~A~eA~~~GLv~~vv~ 468 (550)
T PRK08184 442 AAVRAKIG-QPLDADAAEELGLVTAAPD 468 (550)
T ss_pred HHHHHHhC-CcCCHHHHHHcCCcccccC
Confidence 111 1233 4579999999999999986
No 130
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.37 E-value=0.0011 Score=63.26 Aligned_cols=110 Identities=24% Similarity=0.406 Sum_probs=78.4
Q ss_pred CCceEEEEcCCCCcH-------HHHHHHHHHHH---hhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCC
Q 022161 152 NKDIIMYLNSPGGSV-------TAGMAIFDTIR---HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (301)
Q Consensus 152 ~k~I~L~INSPGGsV-------~ag~aIyd~m~---~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~ 221 (301)
.-+|+.+|++||-.. -.+.+|...+. .++.||++++.|-..|+|++-...|++ .+|+.||++-+-.|.
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPE 227 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPE 227 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChh
Confidence 579999999999442 35667765444 457899999999999999999999999 899999999888885
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccc
Q 022161 222 GGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 290 (301)
Q Consensus 222 ~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~ 290 (301)
+- ++=++ +. +.+..+.. +.| -+|+++-+++||||.|+..+..
T Consensus 228 G~----AsILW---kD---------------~~ka~eAA-e~m----kita~dLk~lgiID~II~Ep~g 269 (317)
T COG0825 228 GC----ASILW---KD---------------ASKAKEAA-EAM----KITAHDLKELGIIDGIIPEPLG 269 (317)
T ss_pred hh----hhhhh---cC---------------hhhhHHHH-HHc----CCCHHHHHhCCCcceeccCCCC
Confidence 42 22111 11 11111111 111 2588889999999999987654
No 131
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.26 E-value=0.0097 Score=61.77 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=69.0
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCC----------CcHHHHHHHHHHHHhhCCCeEEEEcCccchHhHH
Q 022161 128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF 197 (301)
Q Consensus 128 ~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPG----------GsV~ag~aIyd~m~~~~~pV~Tvv~G~AASaaa~ 197 (301)
+|.++.+.++...+-+...+. -.-+|+..+|+|| |.+..+-.+..++.....|++|++.|-|+++|++
T Consensus 379 ~g~l~~~~a~Kaarfi~lc~~--~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~ 456 (569)
T PLN02820 379 NGILFTESALKGAHFIELCAQ--RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNY 456 (569)
T ss_pred CCccCHHHHHHHHHHHHHHHh--cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHH
Confidence 466888887776665555443 3568999999999 4455666777777788899999999999999998
Q ss_pred HHhcCC--CCceEecCCeEEEeecCC
Q 022161 198 LLSAGT--KGKRYSLPNSRIMIHQPL 221 (301)
Q Consensus 198 Il~aG~--kgkR~a~PnS~imIHqp~ 221 (301)
.+++.. ....+|.|++.+.+..|.
T Consensus 457 aM~g~~~~~d~~~awp~A~i~vmg~e 482 (569)
T PLN02820 457 GMCGRAYSPNFLFMWPNARIGVMGGA 482 (569)
T ss_pred HhcCcCCCCCEEEECCCCeEEecCHH
Confidence 887432 123788899998876663
No 132
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.25 E-value=0.0047 Score=59.07 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=67.8
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHH-------HHHHHH---hhCCCeEEEEcCccchHh
Q 022161 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA-------IFDTIR---HIRPDVSTVCVGLAASMG 195 (301)
Q Consensus 126 ~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~a-------Iyd~m~---~~~~pV~Tvv~G~AASaa 195 (301)
|++|.++...++.+.+.+...... .-++++...|+|....++.. +...+. ....|.++++.|-|+.++
T Consensus 132 f~gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~ 209 (292)
T PRK05654 132 FMGGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 209 (292)
T ss_pred cccCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHH
Confidence 457888888899988887765543 46899999999987666542 222332 234799999999998887
Q ss_pred HHHHh-cCCCCceEecCCeEEEeecC
Q 022161 196 AFLLS-AGTKGKRYSLPNSRIMIHQP 220 (301)
Q Consensus 196 a~Il~-aG~kgkR~a~PnS~imIHqp 220 (301)
++.+. .++- ++|.|++.+++-.|
T Consensus 210 aas~a~~~D~--iia~p~A~ig~aGp 233 (292)
T PRK05654 210 SASFAMLGDI--IIAEPKALIGFAGP 233 (292)
T ss_pred HHHHHHcCCE--EEEecCcEEEecCH
Confidence 77655 4777 89999999998766
No 133
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.21 E-value=0.0043 Score=59.13 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=85.6
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHH-------HHHH---hhCCCeEEEEcCccchHh
Q 022161 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF-------DTIR---HIRPDVSTVCVGLAASMG 195 (301)
Q Consensus 126 ~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIy-------d~m~---~~~~pV~Tvv~G~AASaa 195 (301)
|++|.++....+.+.+.+..+... .-+|++.++|+|.....+.... ..+. ....|.++++.|-|+.++
T Consensus 131 f~gGSmg~~~geKi~r~~e~A~~~--~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~ 208 (285)
T TIGR00515 131 FMGGSMGSVVGEKFVRAIEKALED--NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGV 208 (285)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHH
Confidence 346788888889988887765433 4589999999998766554222 2222 234799999999999887
Q ss_pred HHHHh-cCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHH
Q 022161 196 AFLLS-AGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEE 274 (301)
Q Consensus 196 a~Il~-aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~E 274 (301)
++.++ .++- ++|.|++.+++..|. + +.+.+| +++. . -+-+++-
T Consensus 209 aas~a~~~D~--iia~p~A~ig~aGpr----------------V----------ie~ti~---e~lp----e-~~q~ae~ 252 (285)
T TIGR00515 209 SASFAMLGDL--NIAEPKALIGFAGPR----------------V----------IEQTVR---EKLP----E-GFQTSEF 252 (285)
T ss_pred HHHHHhCCCE--EEEECCeEEEcCCHH----------------H----------HHHHhc---Cccc----h-hcCCHHH
Confidence 77664 7887 999999999986662 0 111122 1111 1 2447888
Q ss_pred HHHcCCceeecCC
Q 022161 275 AKDYGLIDGVVMN 287 (301)
Q Consensus 275 A~e~GLID~I~~~ 287 (301)
+.+.|+||.|++.
T Consensus 253 ~~~~G~vD~iv~~ 265 (285)
T TIGR00515 253 LLEHGAIDMIVHR 265 (285)
T ss_pred HHhCCCCcEEECc
Confidence 8899999999863
No 134
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.19 E-value=0.0011 Score=67.24 Aligned_cols=91 Identities=21% Similarity=0.297 Sum_probs=68.8
Q ss_pred cccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCC----------CcHHHHHHHHHHHHhhCCCeEEEEcCccchHhHHH
Q 022161 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL 198 (301)
Q Consensus 129 G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPG----------GsV~ag~aIyd~m~~~~~pV~Tvv~G~AASaaa~I 198 (301)
|.|+.+.+....+-+...+.. .-+|+..+|+|| |.+.++-.+.+++...+.|+++++.|-+.++|++.
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a 385 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA 385 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence 778888888877776666553 459999999999 67888999999999999999999999999988877
Q ss_pred HhcCCCC--ceEecCCeEEEeecCC
Q 022161 199 LSAGTKG--KRYSLPNSRIMIHQPL 221 (301)
Q Consensus 199 l~aG~kg--kR~a~PnS~imIHqp~ 221 (301)
+++...+ ..++.|++.+.+..|.
T Consensus 386 m~~~~~~~~~~~Awp~a~~~vm~~e 410 (493)
T PF01039_consen 386 MCGRGYGPDFVFAWPTAEIGVMGPE 410 (493)
T ss_dssp TTGGGGTTSEEEEETT-EEESS-HH
T ss_pred hcccccchhhhhhhhcceeeecChh
Confidence 7776222 2788999999887763
No 135
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.04 E-value=0.00087 Score=62.16 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=75.5
Q ss_pred HHHHHHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 022161 170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYL 249 (301)
Q Consensus 170 ~aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~ 249 (301)
..-|..|..+++||++-+-|.|..+|.=|..|||. ||+...+.|-+...-. |-+.|+.. +.++ -+++
T Consensus 116 Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDv---glaADvGT----L~Rl----pkvV 182 (292)
T KOG1681|consen 116 QDTFTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDV---GLAADVGT----LNRL----PKVV 182 (292)
T ss_pred HHHHHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeee---ehhhchhh----Hhhh----hHHh
Confidence 33456777788999999999999999999999999 9999999998876533 33334432 2211 1221
Q ss_pred HHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCccccchhh
Q 022161 250 SYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPV 295 (301)
Q Consensus 250 A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~al~~~ 295 (301)
| +...+.++.-..+-|+|.||++.|||-+|..+..+.|...
T Consensus 183 ----G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~ 223 (292)
T KOG1681|consen 183 ----G-NQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGA 223 (292)
T ss_pred ----c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhh
Confidence 1 1122333333334579999999999999999887776544
No 136
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.71 E-value=0.0095 Score=57.27 Aligned_cols=93 Identities=13% Similarity=0.122 Sum_probs=72.2
Q ss_pred EEccccChhHHHHHHHHHHhhhhcC---CCCceEEEEcCCCCcHHHHH-------HHHHHHHhhC--CCeEEEEcCc--c
Q 022161 126 RCGGPVEDDMANIIVAQLLYLDAVD---PNKDIIMYLNSPGGSVTAGM-------AIFDTIRHIR--PDVSTVCVGL--A 191 (301)
Q Consensus 126 ~L~G~Idd~~a~~iiaqL~~L~~~d---~~k~I~L~INSPGGsV~ag~-------aIyd~m~~~~--~pV~Tvv~G~--A 191 (301)
|++|.+.+.....+...+..+.... .-.++++.+.|.|+....+. .|+..+...+ .|+++++.|- |
T Consensus 79 f~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc 158 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGC 158 (301)
T ss_pred ccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 5689999988888888776554332 02589999999998865433 3444444444 7999999998 9
Q ss_pred chHhHHHHhcCCCCceEecCCeEEEeecC
Q 022161 192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQP 220 (301)
Q Consensus 192 ASaaa~Il~aG~kgkR~a~PnS~imIHqp 220 (301)
+.+++++++.||. ++|.+++++++-.|
T Consensus 159 ~GG~a~~a~l~D~--iIm~~~a~iglaGP 185 (301)
T PRK07189 159 FGGMGIAAALCSY--LIVSEEGRLGLSGP 185 (301)
T ss_pred cHHHHHHHhcCCE--EEEECCcEEeccCH
Confidence 9999999999998 99999999998777
No 137
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=96.49 E-value=0.042 Score=52.78 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=83.8
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHH----HHHHH---HH----hhCCCeEEEEcCccchH
Q 022161 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM----AIFDT---IR----HIRPDVSTVCVGLAASM 194 (301)
Q Consensus 126 ~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~----aIyd~---m~----~~~~pV~Tvv~G~AASa 194 (301)
|++|.+.....+.+.+.+..+.. ..-++++...|.|+....|. ++... +. .-..|.++++.|-++.+
T Consensus 144 f~gGSmG~v~geKi~ra~e~A~~--~rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG 221 (296)
T CHL00174 144 FMGGSMGSVVGEKITRLIEYATN--ESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGG 221 (296)
T ss_pred ccccCcCHHHHHHHHHHHHHHHH--cCCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchH
Confidence 45777777788888887765543 24689999999998765544 21111 22 23468999999988888
Q ss_pred hHHHHhc-CCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 022161 195 GAFLLSA-GTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAE 273 (301)
Q Consensus 195 aa~Il~a-G~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~ 273 (301)
+++.++. ||. +++.|++.+++-.|.. +.+.+|. + +..+ |=+++
T Consensus 222 ~aas~a~l~Di--iiae~~A~IgfAGPrV--------------------------Ie~t~ge---~----lpe~-fq~ae 265 (296)
T CHL00174 222 VTASFGMLGDI--IIAEPNAYIAFAGKRV--------------------------IEQTLNK---T----VPEG-SQAAE 265 (296)
T ss_pred HHHHHHHcccE--EEEeCCeEEEeeCHHH--------------------------HHHhcCC---c----CCcc-cccHH
Confidence 8887664 888 8899999999877721 1122221 1 1112 33788
Q ss_pred HHHHcCCceeecC
Q 022161 274 EAKDYGLIDGVVM 286 (301)
Q Consensus 274 EA~e~GLID~I~~ 286 (301)
-.++.|+||.|+.
T Consensus 266 ~l~~~G~vD~iV~ 278 (296)
T CHL00174 266 YLFDKGLFDLIVP 278 (296)
T ss_pred HHHhCcCceEEEc
Confidence 8889999999986
No 138
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=96.27 E-value=0.013 Score=54.26 Aligned_cols=134 Identities=23% Similarity=0.222 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHHhhhhcCCCCceEEEEcCCC-------Cc----------H-------HHHHHHHHHHHhhCCCeEEEE
Q 022161 132 EDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GS----------V-------TAGMAIFDTIRHIRPDVSTVC 187 (301)
Q Consensus 132 dd~~a~~iiaqL~~L~~~d~~k~I~L~INSPG-------Gs----------V-------~ag~aIyd~m~~~~~pV~Tvv 187 (301)
.+.++..++..|..+..++...-|+|-=|+-| |+ + ...+.+-..||.+++||++.|
T Consensus 44 rP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V 123 (282)
T COG0447 44 RPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMV 123 (282)
T ss_pred CCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceEEEE
Confidence 45667777788776666555544544434222 22 2 134555678899999999999
Q ss_pred cCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHhhCCC-HHHHHhhhc
Q 022161 188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA-QGGQSDIDLQANEMLHHKANLNGYLSYHTGQT-LEKINEDTD 265 (301)
Q Consensus 188 ~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~-~G~~~di~~~akel~~~k~~~~~i~A~~tG~s-~e~I~~~~~ 265 (301)
.|.|..+|-++-..|+- -++..|++|+=..|..+. .|-.- ..++|+.-|+. ..+|.=+.
T Consensus 124 ~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~G----------------s~ylar~VGqKkArEIwfLc- 184 (282)
T COG0447 124 AGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYG----------------SSYLARIVGQKKAREIWFLC- 184 (282)
T ss_pred eeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCccc----------------HHHHHHHhhhhhhHHhhhhh-
Confidence 99999999999999998 789999999877776542 11111 12333333432 23443222
Q ss_pred CCcccCHHHHHHcCCceeecC
Q 022161 266 RDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 266 rd~~lTa~EA~e~GLID~I~~ 286 (301)
+.++|+||++.|+|..|+.
T Consensus 185 --R~Y~A~eal~MGlVN~Vvp 203 (282)
T COG0447 185 --RQYDAEEALDMGLVNTVVP 203 (282)
T ss_pred --hhccHHHHHhcCceeeecc
Confidence 3359999999999999874
No 139
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=96.17 E-value=0.015 Score=53.66 Aligned_cols=131 Identities=21% Similarity=0.195 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEEcCCCC--------------------cHHHHHHHHHHHHhhCCCeEEEEcCccchH
Q 022161 135 MANIIVAQLLYLDAVDPNKDIIMYLNSPGG--------------------SVTAGMAIFDTIRHIRPDVSTVCVGLAASM 194 (301)
Q Consensus 135 ~a~~iiaqL~~L~~~d~~k~I~L~INSPGG--------------------sV~ag~aIyd~m~~~~~pV~Tvv~G~AASa 194 (301)
+.+.+...|..+..++..+-|.|+=-+||= .|..-..+++.|..++.||++-++|.|-.+
T Consensus 59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG 138 (291)
T KOG1679|consen 59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG 138 (291)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence 345555666667777777777777777882 134455677888888999999999999999
Q ss_pred hHHHHhcCCCCceEecCCeEEEeecCC----CCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 022161 195 GAFLLSAGTKGKRYSLPNSRIMIHQPL----GGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 270 (301)
Q Consensus 195 aa~Il~aG~kgkR~a~PnS~imIHqp~----~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~l 270 (301)
|-=++++||. |++..++.+++-.-. .|..|.. .+ -+++ | ....++++-..+.|
T Consensus 139 GLElALACDi--Rva~s~akmGLvET~laiiPGaGGtQ-RL--------------pR~v----g--~alaKELIftarvl 195 (291)
T KOG1679|consen 139 GLELALACDI--RVAASSAKMGLVETKLAIIPGAGGTQ-RL--------------PRIV----G--VALAKELIFTARVL 195 (291)
T ss_pred chhhhhhccc--eehhhhccccccccceeeecCCCccc-hh--------------HHHH----h--HHHHHhHhhhheec
Confidence 9999999999 999999988875432 1223321 11 1111 1 11223344444667
Q ss_pred CHHHHHHcCCceeecCCc
Q 022161 271 SAEEAKDYGLIDGVVMNP 288 (301)
Q Consensus 271 Ta~EA~e~GLID~I~~~~ 288 (301)
++.||+++|||..+++..
T Consensus 196 ~g~eA~~lGlVnhvv~qn 213 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVEQN 213 (291)
T ss_pred cchhHHhcchHHHHHhcC
Confidence 999999999999987643
No 140
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=95.89 E-value=0.11 Score=48.37 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=74.4
Q ss_pred hcCCCCceEEEEcCCC---CcHHHHHHHHH----------HHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeE
Q 022161 148 AVDPNKDIIMYLNSPG---GSVTAGMAIFD----------TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSR 214 (301)
Q Consensus 148 ~~d~~k~I~L~INSPG---GsV~ag~aIyd----------~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~ 214 (301)
.+.+.++|++.|++|| |.-.+.+.|.. .-|....||++.+.|.|.|+| ||+.+--....+++|++
T Consensus 60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGa-FLA~GlqA~rl~AL~ga- 137 (234)
T PF06833_consen 60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGA-FLAHGLQANRLIALPGA- 137 (234)
T ss_pred hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHH-HHHHHHHhcchhcCCCC-
Confidence 4457889999999999 55555555544 444456799999999999988 45544222238888843
Q ss_pred EEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc--ccCHHHHHHcCCceeecC
Q 022161 215 IMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF--FMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 215 imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~--~lTa~EA~e~GLID~I~~ 286 (301)
++|-.. . ...|+-|.+|.|+++++...-- -...+-=..+|.++++.+
T Consensus 138 -~i~vM~---------~---------------~s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 138 -MIHVMG---------K---------------PSAARVTKRPVEELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred -eeecCC---------h---------------HHhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 444320 0 1235668888888888765422 234555578888888876
No 141
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=95.37 E-value=0.091 Score=54.04 Aligned_cols=92 Identities=21% Similarity=0.337 Sum_probs=68.9
Q ss_pred EccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCC----------CcHHHHHHHHHHHHhhCCCeEEEEcCccchHhH
Q 022161 127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGA 196 (301)
Q Consensus 127 L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPG----------GsV~ag~aIyd~m~~~~~pV~Tvv~G~AASaaa 196 (301)
++|.|+.+.++.--+-+.+.+. -.-+|++..|.|| |-+--|-.|..++-....|.+|++.+-+..+|+
T Consensus 336 ~~G~l~~~sa~KaArFI~~cd~--~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~ 413 (526)
T COG4799 336 LGGVLDIDSADKAARFIRLCDA--FNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAY 413 (526)
T ss_pred cccccchHHHHHHHHHHHhhhc--cCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEeccccccee
Confidence 3788998887775444433332 2458999999999 557788888999999999999999999999998
Q ss_pred HHHhcCCCC--ceEecCCeEEEeecC
Q 022161 197 FLLSAGTKG--KRYSLPNSRIMIHQP 220 (301)
Q Consensus 197 ~Il~aG~kg--kR~a~PnS~imIHqp 220 (301)
+..++..-+ ..+|-|++++.+..|
T Consensus 414 ~~M~~~~~~~~~~~AwP~a~iaVMG~ 439 (526)
T COG4799 414 YVMGGKALGPDFNYAWPTAEIAVMGP 439 (526)
T ss_pred eeecCccCCCceeEecCcceeeecCH
Confidence 888765443 245567777766554
No 142
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.43 E-value=0.27 Score=51.23 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=67.2
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHH----------HHHHHHHH-HHhh--CCCeEEEEcCccc
Q 022161 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT----------AGMAIFDT-IRHI--RPDVSTVCVGLAA 192 (301)
Q Consensus 126 ~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~----------ag~aIyd~-m~~~--~~pV~Tvv~G~AA 192 (301)
+.+|.+.+...+.+.+.+..... ..-+|+..++|+|+.+. ..-.|+.. .+.+ ..|.++++.|-|+
T Consensus 140 v~GGs~g~~~~~Ki~r~~elA~~--~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~ 217 (569)
T PLN02820 140 VKGGTYYPITVKKHLRAQEIAAQ--CRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCT 217 (569)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 46889999999998877765443 24689999999997761 11234444 3323 3699999999999
Q ss_pred hHhHHHHhcCCCCceEec-CCeEEEeecC
Q 022161 193 SMGAFLLSAGTKGKRYSL-PNSRIMIHQP 220 (301)
Q Consensus 193 Saaa~Il~aG~kgkR~a~-PnS~imIHqp 220 (301)
++|+++...++. .+|. +++.+.+-.|
T Consensus 218 gGgAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 218 AGGAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred hHHHHHHHhCCc--eEEecCCcEEEecCH
Confidence 999999888877 5554 6788888777
No 143
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=92.81 E-value=0.75 Score=47.34 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=68.6
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHH-------HHH-HHHHh-hCCCeEEEEcCccchHhH
Q 022161 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM-------AIF-DTIRH-IRPDVSTVCVGLAASMGA 196 (301)
Q Consensus 126 ~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~-------aIy-d~m~~-~~~pV~Tvv~G~AASaaa 196 (301)
|++|.+.....+.+.+.+..+.. ..-+++..++|.|+.+..+. .++ ...+. -..|+++++.|-|+.+++
T Consensus 93 ~~gGS~g~~~~~K~~r~~e~A~~--~~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a 170 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIMDLAMK--MGAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAV 170 (512)
T ss_pred ccccCCCHHHHHHHHHHHHHHHH--cCCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHH
Confidence 56888999888888877765543 24689999999998864432 223 22222 236999999999999999
Q ss_pred HHHhcCCCCceEecCC-eEEEeecC
Q 022161 197 FLLSAGTKGKRYSLPN-SRIMIHQP 220 (301)
Q Consensus 197 ~Il~aG~kgkR~a~Pn-S~imIHqp 220 (301)
+.++.||. ++|.++ +.+++-.|
T Consensus 171 ~~~al~D~--vim~~~~a~i~~aGP 193 (512)
T TIGR01117 171 YSPALTDF--IYMVDNTSQMFITGP 193 (512)
T ss_pred HHHHhcCc--eEEeccceEEEecCh
Confidence 99999998 999997 46777766
No 144
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=91.60 E-value=1.4 Score=41.69 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=59.4
Q ss_pred HHHHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 022161 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSY 251 (301)
Q Consensus 172 Iyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A~ 251 (301)
..++.-.+++|+++.+.|=|-..|+.|+--+|. .++...+. +|.|... -|+..|--... . +-+
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~--V~A~Dka~--F~TPfa~-lGq~PEG~Ss~--t----------~p~ 161 (266)
T KOG0016|consen 99 FVNTFINFPKPLVALVNGPAIGLGASILPLCDY--VWASDKAW--FQTPFAK-LGQSPEGCSSV--T----------LPK 161 (266)
T ss_pred HHHHHhcCCCCEEEEecCCccchhhHHhhhhhe--EEeccceE--Eeccchh-cCCCCCcceee--e----------ehH
Confidence 457777888999999999999999999999998 77775554 4666532 12211110000 0 000
Q ss_pred hhCCCHHHHHhh-hcCCcccCHHHHHHcCCceeecCC
Q 022161 252 HTGQTLEKINED-TDRDFFMSAEEAKDYGLIDGVVMN 287 (301)
Q Consensus 252 ~tG~s~e~I~~~-~~rd~~lTa~EA~e~GLID~I~~~ 287 (301)
..| .+.-.++ +-+ .-|+++||.+.|||++|...
T Consensus 162 imG--~~~A~E~ll~~-~kltA~Ea~~~glVskif~~ 195 (266)
T KOG0016|consen 162 IMG--SASANEMLLFG-EKLTAQEACEKGLVSKIFPA 195 (266)
T ss_pred hhc--hhhHHHHHHhC-CcccHHHHHhcCchhhhcCh
Confidence 011 1111122 222 34699999999999999853
No 145
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=91.37 E-value=0.46 Score=48.47 Aligned_cols=91 Identities=20% Similarity=0.293 Sum_probs=66.8
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCC--cHHHHH-------HHHHHHHhh--CCCeEEEEcCccchH
Q 022161 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG--SVTAGM-------AIFDTIRHI--RPDVSTVCVGLAASM 194 (301)
Q Consensus 126 ~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGG--sV~ag~-------aIyd~m~~~--~~pV~Tvv~G~AASa 194 (301)
+++|.+.+.....+.+.+...... .-+++..++|.|+ ....++ .|+..+... ..|+++++.|-|..+
T Consensus 68 ~~gGs~g~~~~~Ki~ra~~~A~~~--~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg 145 (493)
T PF01039_consen 68 VLGGSVGEVHGEKIARAIELALEN--GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGG 145 (493)
T ss_dssp SGGGTBSHHHHHHHHHHHHHHHHH--TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGG
T ss_pred eecCCCCcccceeeehHHHHHHHc--CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccc
Confidence 467888888888888777655443 4578888999999 432222 233333222 479999999999999
Q ss_pred hHHHHhcCCCCceEecCC-eEEEeecC
Q 022161 195 GAFLLSAGTKGKRYSLPN-SRIMIHQP 220 (301)
Q Consensus 195 aa~Il~aG~kgkR~a~Pn-S~imIHqp 220 (301)
+++++..++. .++.++ +.+++..|
T Consensus 146 ~A~~~~~~d~--~i~~~~~a~i~l~GP 170 (493)
T PF01039_consen 146 GAYLAALSDF--VIMVKGTARIFLAGP 170 (493)
T ss_dssp GGHHHHHSSE--EEEETTTCEEESSTH
T ss_pred hhhcccccCc--cccCccceEEEeccc
Confidence 9999999988 888887 99998877
No 146
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=90.11 E-value=2.3 Score=39.33 Aligned_cols=96 Identities=20% Similarity=0.147 Sum_probs=60.0
Q ss_pred HHHHHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 022161 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLS 250 (301)
Q Consensus 171 aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~~~di~~~akel~~~k~~~~~i~A 250 (301)
.+.+.||.++.||++-+.|.|+-+|.-|.++||- .++..++.|..-....|..-...-+. .++.
T Consensus 116 dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tPG~~vGlFCSTPGvA-laRa------------- 179 (287)
T KOG1682|consen 116 DVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTPGAGVGLFCSTPGVA-LARA------------- 179 (287)
T ss_pred HHHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCCCCceeeEecCcchh-Hhhh-------------
Confidence 4456788888999999999999999999999998 77888887753221111110111111 1111
Q ss_pred HhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecC
Q 022161 251 YHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVM 286 (301)
Q Consensus 251 ~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~ 286 (301)
.+......++-...-.+++||+-.||+.+++.
T Consensus 180 ----vpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp 211 (287)
T KOG1682|consen 180 ----VPRKVAAYMLMTGLPITGEEALISGLVSKVVP 211 (287)
T ss_pred ----cchhHHHHHHHhCCCCchHHHHHhhhhhhcCC
Confidence 12222222222223458999999999999875
No 147
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=86.62 E-value=9.8 Score=36.51 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=59.7
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHH----HH------HHHHHhhCCCeEEEEc-----Cc
Q 022161 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM----AI------FDTIRHIRPDVSTVCV-----GL 190 (301)
Q Consensus 126 ~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~----aI------yd~m~~~~~pV~Tvv~-----G~ 190 (301)
|++|-+...+.+.|++.+.++-.+ ..++++.--|.|-....|+ ++ ...++..+.|+++|.. |+
T Consensus 133 FmgGSmGsVvGeki~ra~E~A~e~--k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGV 210 (294)
T COG0777 133 FMGGSMGSVVGEKITRAIERAIED--KLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 210 (294)
T ss_pred ccccchhHHHHHHHHHHHHHHHHh--CCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 456666677788999998876543 3678888888776544332 11 2334444568877775 55
Q ss_pred cchHhHHHHhcCCCCceEecCCeEEEeecCC
Q 022161 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (301)
Q Consensus 191 AASaaa~Il~aG~kgkR~a~PnS~imIHqp~ 221 (301)
-||-| +-||. .++.|.+.|++..|.
T Consensus 211 sASfA----~lGDi--~iAEP~AlIGFAGpR 235 (294)
T COG0777 211 SASFA----MLGDI--IIAEPGALIGFAGPR 235 (294)
T ss_pred hHhHH----hccCe--eecCcccccccCcch
Confidence 55544 55888 899999999998874
No 148
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=82.86 E-value=2 Score=37.59 Aligned_cols=44 Identities=20% Similarity=0.486 Sum_probs=31.2
Q ss_pred EEEEccccChhHHHHHHHHHHh-hhhcCCCCceEEEEcCCCCcHH
Q 022161 124 IIRCGGPVEDDMANIIVAQLLY-LDAVDPNKDIIMYLNSPGGSVT 167 (301)
Q Consensus 124 II~L~G~Idd~~a~~iiaqL~~-L~~~d~~k~I~L~INSPGGsV~ 167 (301)
++-+.|.|+-.-++.+.+.+-. |....+.+.|.|++-||||-|.
T Consensus 102 VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~Vh 146 (155)
T PF08496_consen 102 VLDFKGDIKASEVESLREEISAILSVATPEDEVLVRLESPGGMVH 146 (155)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCceee
Confidence 5677899987666555444432 2334567899999999999874
No 149
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=81.59 E-value=10 Score=33.83 Aligned_cols=79 Identities=20% Similarity=0.195 Sum_probs=56.6
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh------------------------
Q 022161 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH------------------------ 178 (301)
Q Consensus 124 II~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~m~~------------------------ 178 (301)
.|.+..-..+...+.+.+.+..++. +.+.++|.+ +-|||.+..+..|.+.+-.
T Consensus 63 Yi~i~~f~~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (224)
T cd06567 63 YIRIPSFSAESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGG 140 (224)
T ss_pred EEEECccCCcchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCC
Confidence 3444443335566677777766654 467777775 5689999999998887753
Q ss_pred --hCCCeEEEEcCccchHhHHHHhcCCC
Q 022161 179 --IRPDVSTVCVGLAASMGAFLLSAGTK 204 (301)
Q Consensus 179 --~~~pV~Tvv~G~AASaaa~Il~aG~k 204 (301)
...||++.+.+..+|+|-+++.+=..
T Consensus 141 ~~~~~pv~vL~~~~taSaaE~~a~~lk~ 168 (224)
T cd06567 141 SLYDGPLVVLVNEGSASASEIFAGALQD 168 (224)
T ss_pred cccCCCEEEEECCCCccHHHHHHHHHHh
Confidence 13589999999999999988886443
No 150
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=70.52 E-value=17 Score=36.29 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=64.7
Q ss_pred CcEEEEccc-----cChhHHHHHHHHHHhhhhcCCCCceEEEEc-----CCCCcHHHH-------------------HHH
Q 022161 122 HRIIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG-------------------MAI 172 (301)
Q Consensus 122 ~rII~L~G~-----Idd~~a~~iiaqL~~L~~~d~~k~I~L~IN-----SPGGsV~ag-------------------~aI 172 (301)
.|+|.|+-| ++-++...+..+|..++.++..+-|+|.=+ |-||+|.+. ..+
T Consensus 48 ~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl 127 (401)
T KOG1684|consen 48 ARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSL 127 (401)
T ss_pred eeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 477777765 777888888889988887766665555544 346775422 223
Q ss_pred HHHHHhhCCCeEEEEcCccchHhHHHHhcCCCCceEecCCeE
Q 022161 173 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSR 214 (301)
Q Consensus 173 yd~m~~~~~pV~Tvv~G~AASaaa~Il~aG~kgkR~a~PnS~ 214 (301)
...|-.+.+|+++++.|+-..+|.=|...|.- |+|...+.
T Consensus 128 ~~~igtY~KP~ValmdGITMGgG~GLS~hg~f--RVATerT~ 167 (401)
T KOG1684|consen 128 NHLIGTYLKPYVALMDGITMGGGVGLSVHGRF--RVATERTV 167 (401)
T ss_pred HHHHHHhcCceEEEeeceeecCCcceeeccee--EEeeccce
Confidence 34556667899999999999999888887766 66655443
No 151
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=68.40 E-value=13 Score=38.68 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=64.6
Q ss_pred EccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHH--------HHHHHHHHHhhC-CCeEEEEcCccchHhHH
Q 022161 127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA--------GMAIFDTIRHIR-PDVSTVCVGLAASMGAF 197 (301)
Q Consensus 127 L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~a--------g~aIyd~m~~~~-~pV~Tvv~G~AASaaa~ 197 (301)
.+|...+-.++.+++....+.. ...+++...+|.|+.+.. |.-.|+..+.+. .|.++++.|-|+.+|+|
T Consensus 103 ~gGt~~~~~~~Ki~r~~~~A~~--~g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY 180 (526)
T COG4799 103 KGGTLGEMTAKKILRAQELAIE--NGLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAY 180 (526)
T ss_pred ecccccccccchHHHHHHHHHH--cCCCEEEEEcccccccccCccccccchHHHHHHHHhccCCCEEEEEEecCcccccc
Confidence 4666777666666665543322 245777777777765432 555566666665 68999999999999999
Q ss_pred HHhcCCCCceEecCC-eEEEeecC
Q 022161 198 LLSAGTKGKRYSLPN-SRIMIHQP 220 (301)
Q Consensus 198 Il~aG~kgkR~a~Pn-S~imIHqp 220 (301)
+..-+|. .+|..+ +.+.+-.|
T Consensus 181 ~pal~D~--~imv~~~~~mfltGP 202 (526)
T COG4799 181 SPALTDF--VIMVRDQSYMFLTGP 202 (526)
T ss_pred cccccce--EEEEcCCccEEeeCH
Confidence 9999998 888888 77777666
No 152
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=61.34 E-value=29 Score=35.63 Aligned_cols=86 Identities=22% Similarity=0.330 Sum_probs=57.3
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCC---Cc-------HHHHHHHHHHHHhhCCCeEEEEcCccchHhHH
Q 022161 128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG---GS-------VTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF 197 (301)
Q Consensus 128 ~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPG---Gs-------V~ag~aIyd~m~~~~~pV~Tvv~G~AASaaa~ 197 (301)
+|-++.+++.....-+++..+ ..-++++..|+|| |. .-.|-.+.++....+.|.+|++.|-+.. |.+
T Consensus 362 ~G~L~s~sa~KgarfIe~c~q--~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y 438 (536)
T KOG0540|consen 362 GGVLFSESAVKGARFIELCDQ--RNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNY 438 (536)
T ss_pred ccccchhhhhhhHHHHHHHHh--cCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-Ccc
Confidence 356666777666555555443 3568999999999 22 3344445566666677999999998888 444
Q ss_pred HHh----cCCCCceEecCCeEEEee
Q 022161 198 LLS----AGTKGKRYSLPNSRIMIH 218 (301)
Q Consensus 198 Il~----aG~kgkR~a~PnS~imIH 218 (301)
-.| .|+. .||-||++|.+.
T Consensus 439 ~m~sr~~~gd~--~yawP~A~Iavm 461 (536)
T KOG0540|consen 439 AMCSRGYSGDI--NYAWPNARIAVM 461 (536)
T ss_pred cccccccCCce--eEEcccceeeec
Confidence 433 3555 778888888653
No 153
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=61.00 E-value=22 Score=34.27 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=52.6
Q ss_pred CcEEEEccc--cChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccc
Q 022161 122 HRIIRCGGP--VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA 192 (301)
Q Consensus 122 ~rII~L~G~--Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AA 192 (301)
..+|-+|.. .|-+ +...|.|+..++.++.|.||+-+-|-.+..+..+.+..+. ++||+++..|..+
T Consensus 178 S~~VS~Gn~~~adv~----~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 178 STCVGIGGDPFNGTN----FVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEEEeCCCCCCCCC----HHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 356888888 5543 3456677888888999999999988888888888887664 7899999988775
No 154
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=60.54 E-value=58 Score=25.26 Aligned_cols=76 Identities=14% Similarity=0.299 Sum_probs=44.1
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCceEE------EEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccchHhH
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIM------YLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGA 196 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L------~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AASaaa 196 (301)
-++.+.|+++-..++.+..++..+-...+.+.|+| ||+|.| +.+-..++..++.. .+..+..|.-...--
T Consensus 10 ~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssg--i~~L~~~~~~~~~~--g~~l~l~~~~~~v~~ 85 (106)
T TIGR02886 10 LIVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSG--LGVILGRYKKIKNE--GGEVIVCNVSPAVKR 85 (106)
T ss_pred EEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchH--HHHHHHHHHHHHHc--CCEEEEEeCCHHHHH
Confidence 47889999999999999999876433234566776 444444 12222334444443 344445555544444
Q ss_pred HHHhcC
Q 022161 197 FLLSAG 202 (301)
Q Consensus 197 ~Il~aG 202 (301)
++-.+|
T Consensus 86 ~l~~~g 91 (106)
T TIGR02886 86 LFELSG 91 (106)
T ss_pred HHHHhC
Confidence 444444
No 155
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=59.47 E-value=66 Score=28.99 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=57.2
Q ss_pred chhhhhcCC-cEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh-------------
Q 022161 114 NVLSQLFQH-RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH------------- 178 (301)
Q Consensus 114 dv~s~L~~~-rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~m~~------------- 178 (301)
|.|++++.. ..|.+.. .+....+.+.+.|..+...+ .+.++|.+ +.+||++..+..|...+-.
T Consensus 41 ~~~~~~~~~igYi~i~s-f~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g~ 118 (211)
T cd07560 41 DPYSRYLTPIGYIRITS-FSENTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNGK 118 (211)
T ss_pred CCcceeeCceEEEEEcc-cCchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCCc
Confidence 444444443 1233332 34455667777777666543 56777664 4578998888887764432
Q ss_pred -----------hCCCeEEEEcCccchHhHHHHhcCCC
Q 022161 179 -----------IRPDVSTVCVGLAASMGAFLLSAGTK 204 (301)
Q Consensus 179 -----------~~~pV~Tvv~G~AASaaa~Il~aG~k 204 (301)
...||++.+.+..+|+|-+++.+=..
T Consensus 119 ~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~lk~ 155 (211)
T cd07560 119 REAYASDDGGLYDGPLVVLVNGGSASASEIVAGALQD 155 (211)
T ss_pred eEEEecCCCccCCCCEEEEeCCCcccHHHHHHHHHhh
Confidence 24688999999999999988886443
No 156
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=57.71 E-value=52 Score=27.38 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh-----------------------------hCCCe
Q 022161 134 DMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH-----------------------------IRPDV 183 (301)
Q Consensus 134 ~~a~~iiaqL~~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~m~~-----------------------------~~~pV 183 (301)
...+.+.+.+..+.. ...+.++|.| +.+||+...+..+...+.. ...||
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (169)
T PF03572_consen 15 SFDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPV 93 (169)
T ss_dssp HHHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEE
T ss_pred ccHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCE
Confidence 344555555555554 4577888887 5678898888888765542 23578
Q ss_pred EEEEcCccchHhHHHHhcCCC
Q 022161 184 STVCVGLAASMGAFLLSAGTK 204 (301)
Q Consensus 184 ~Tvv~G~AASaaa~Il~aG~k 204 (301)
+.++.+.++|+|-+++.+...
T Consensus 94 ~vL~~~~t~Saae~fa~~lk~ 114 (169)
T PF03572_consen 94 YVLTDENTASAAEIFASALKD 114 (169)
T ss_dssp EEEE-TTBBTHHHHHHHHHHH
T ss_pred EEEeCCCCCChhHHHHHHHHh
Confidence 889999999999988886543
No 157
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=55.80 E-value=74 Score=27.63 Aligned_cols=67 Identities=24% Similarity=0.284 Sum_probs=43.9
Q ss_pred CcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccchH
Q 022161 122 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASM 194 (301)
Q Consensus 122 ~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AASa 194 (301)
.+|.++||. +++.+.+.+.|. ...|.-.|.-+-+-| -+-.+-.+|.+.|+..+++++.++.|.==.-
T Consensus 49 ~~ifllG~~--~~~~~~~~~~l~---~~yP~l~ivg~~~g~-f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 49 KRIFLLGGS--EEVLEKAAANLR---RRYPGLRIVGYHHGY-FDEEEEEAIINRINASGPDIVFVGLGAPKQE 115 (172)
T ss_pred CeEEEEeCC--HHHHHHHHHHHH---HHCCCeEEEEecCCC-CChhhHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 467667765 556666666653 334433333333333 3778889999999999999999988754433
No 158
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=54.71 E-value=82 Score=24.24 Aligned_cols=72 Identities=15% Similarity=0.324 Sum_probs=40.7
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCceEE------EEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccchHhH
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIM------YLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGA 196 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L------~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AASaaa 196 (301)
-+|.+.|.++-..+..+.+.|..+......+.|.+ +|+|-|-. .=..++..++.. .+..++.|.-....-
T Consensus 14 ~vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssgl~--~L~~~~~~~~~~--~~~~~l~~~~~~~~~ 89 (108)
T TIGR00377 14 VIVRLSGELDAHTAPLLREKVTPAAERTGPRPIVLDLEDLEFMDSSGLG--VLLGRYKQVRRV--GGQLVLVSVSPRVAR 89 (108)
T ss_pred EEEEEecccccccHHHHHHHHHHHHHhcCCCeEEEECCCCeEEccccHH--HHHHHHHHHHhc--CCEEEEEeCCHHHHH
Confidence 46789999999999888888876554334556666 44554422 222233444432 344444454444444
Q ss_pred HH
Q 022161 197 FL 198 (301)
Q Consensus 197 ~I 198 (301)
++
T Consensus 90 ~l 91 (108)
T TIGR00377 90 LL 91 (108)
T ss_pred HH
Confidence 33
No 159
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=54.42 E-value=46 Score=33.35 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=56.1
Q ss_pred ChhHHHHHHHHHHhhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh-------------------------hCCCeEE
Q 022161 132 EDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH-------------------------IRPDVST 185 (301)
Q Consensus 132 dd~~a~~iiaqL~~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~m~~-------------------------~~~pV~T 185 (301)
++...+.+..+|..|+.+. .+.++|.+ |-|||...++..|.+.... ...|+++
T Consensus 214 ~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~Plvv 292 (406)
T COG0793 214 GEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVV 292 (406)
T ss_pred ccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEE
Confidence 4555666777887888765 88899887 6799999999999987762 1258899
Q ss_pred EEcCccchHhHHHHhcCC
Q 022161 186 VCVGLAASMGAFLLSAGT 203 (301)
Q Consensus 186 vv~G~AASaaa~Il~aG~ 203 (301)
.+.+..||++=+++-+=.
T Consensus 293 Lvn~~SASAsEI~agalq 310 (406)
T COG0793 293 LVNEGSASASEIFAGALQ 310 (406)
T ss_pred EECCCCccHHHHHHHHHH
Confidence 999999999988887644
No 160
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=52.57 E-value=48 Score=28.18 Aligned_cols=61 Identities=21% Similarity=0.378 Sum_probs=36.3
Q ss_pred CcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhC--CCeEEEEcCc
Q 022161 122 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGL 190 (301)
Q Consensus 122 ~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~--~pV~Tvv~G~ 190 (301)
..+|.+|...|-.. .+-|.|+..++.++.|.+||.+-+- +....+.++... +||+++-.|.
T Consensus 29 s~~vs~Gn~~dv~~----~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 29 SYVVSVGNEADVDF----ADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp SEEEE-TT-SSS-H----HHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE---
T ss_pred eEEEEeCccccCCH----HHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 45788888776543 3345667777889999999997553 677888888876 8999998776
No 161
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=51.26 E-value=71 Score=24.71 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=26.5
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEE
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYL 159 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~I 159 (301)
.++.+.|+++-.+++.+..++..+-.++..+.|+|.+
T Consensus 10 ~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vilDl 46 (100)
T cd06844 10 WVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDI 46 (100)
T ss_pred EEEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 4789999999999999998886433333345566543
No 162
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=49.59 E-value=42 Score=32.41 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=51.3
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHH--HHHHHHHHHhhCCCeEEEEcCccchHhHHHHh
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA--GMAIFDTIRHIRPDVSTVCVGLAASMGAFLLS 200 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~a--g~aIyd~m~~~~~pV~Tvv~G~AASaaa~Il~ 200 (301)
..|=|+|. +-.-..++..|..+++| +....++.|-=.||...+ +.-|-+ +..++||++++.|..|
T Consensus 174 ~~IGiGGD--pi~Gt~fid~L~~fe~D-p~T~~ivmiGEiGG~aEe~AA~~i~~--~~~~KPVVa~iaG~ta-------- 240 (293)
T COG0074 174 TAIGIGGD--PIPGTSFIDALEMFEAD-PETEAIVMIGEIGGPAEEEAAEYIKA--NATRKPVVAYIAGRTA-------- 240 (293)
T ss_pred EEEEeCCC--CcCCccHHHHHHHHhcC-ccccEEEEEecCCCcHHHHHHHHHHH--hccCCCEEEEEeccCC--------
Confidence 45667665 22223456677666655 555677789999998643 333333 3455899999999888
Q ss_pred cCCCCceEecCCeEEE
Q 022161 201 AGTKGKRYSLPNSRIM 216 (301)
Q Consensus 201 aG~kgkR~a~PnS~im 216 (301)
.+|||...-.+++.
T Consensus 241 --p~gkrmGhaGaiv~ 254 (293)
T COG0074 241 --PEGKRMGHAGAIVS 254 (293)
T ss_pred --Cccchhhhhhhhhc
Confidence 67777776666654
No 163
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=49.39 E-value=49 Score=32.25 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=48.2
Q ss_pred CcEEEEcccc--ChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccc
Q 022161 122 HRIIRCGGPV--EDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA 192 (301)
Q Consensus 122 ~rII~L~G~I--dd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AA 192 (301)
..+|-+|+.- +- .+.+.|.+++.++.++.|.||+-.-|-....+.+..+. ...++||+++..|..+
T Consensus 197 S~~VsiGnd~~~g~----~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 197 STCVGIGGDPFNGT----NFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred EEEEEeCCCCCCCC----CHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 4567888874 32 24556777788888999999999888776666555555 2346899999988765
No 164
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=49.33 E-value=83 Score=30.17 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=54.1
Q ss_pred ChhHHHHHHHHHHhhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh------------------------hCCCeEEE
Q 022161 132 EDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH------------------------IRPDVSTV 186 (301)
Q Consensus 132 dd~~a~~iiaqL~~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~m~~------------------------~~~pV~Tv 186 (301)
+....+.+.+.|..++.. +.+.++|.+ +-+||.+..+..|...+-. ...||++.
T Consensus 162 ~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pv~vL 240 (334)
T TIGR00225 162 SEHTTEDVKKALDKLEKK-NAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQPYNLPLVVL 240 (334)
T ss_pred ccchHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCccCCCCEEEE
Confidence 445667788888777654 467777775 6689999999888886521 23589999
Q ss_pred EcCccchHhHHHHhcCCC
Q 022161 187 CVGLAASMGAFLLSAGTK 204 (301)
Q Consensus 187 v~G~AASaaa~Il~aG~k 204 (301)
+.+..||+|-+++.+-..
T Consensus 241 vn~~TaSaaE~~a~~l~~ 258 (334)
T TIGR00225 241 VNRGSASASEIFAGALQD 258 (334)
T ss_pred ECCCCCcHHHHHHHHHHh
Confidence 999999999998887544
No 165
>PLN02522 ATP citrate (pro-S)-lyase
Probab=49.04 E-value=48 Score=35.17 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=46.6
Q ss_pred CcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHh--hCCCeEEEEcCccc
Q 022161 122 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH--IRPDVSTVCVGLAA 192 (301)
Q Consensus 122 ~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~--~~~pV~Tvv~G~AA 192 (301)
..+|-+|+..+..+ .+.+-|.+++.++.++.|.||+-=.|.+- ....+.++. .++||++++.|..+
T Consensus 195 S~~VsiGnd~~~g~--~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e---~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 195 YEGIAIGGDVFPGS--TLSDHVLRFNNIPQIKMIVVLGELGGRDE---YSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred EEEEEeCCCCCCCC--CHHHHHHHHhcCCCCCEEEEEEecCchhH---HHHHHHHHHhcCCCCEEEEeccCCC
Confidence 45788998766333 34566777888888999999988555443 344455554 46899999999877
No 166
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=47.85 E-value=1.3e+02 Score=23.35 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=46.6
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcC-CCCcHHHHHHHHHHHHhhC-CCeEEEEcCccchHhHHHHh
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNS-PGGSVTAGMAIFDTIRHIR-PDVSTVCVGLAASMGAFLLS 200 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INS-PGGsV~ag~aIyd~m~~~~-~pV~Tvv~G~AASaaa~Il~ 200 (301)
.++.+.|+++...++.+.+.+...-..++.+.|+|.+.. +-=+.+....|.+..+..+ ..+..++.|+-....-++-.
T Consensus 12 ~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~ 91 (109)
T cd07041 12 LVLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTLVE 91 (109)
T ss_pred EEEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 467899999999999998887543322345566664421 1112233334444444443 34556666666666666655
Q ss_pred cCC
Q 022161 201 AGT 203 (301)
Q Consensus 201 aG~ 203 (301)
+|-
T Consensus 92 ~gl 94 (109)
T cd07041 92 LGI 94 (109)
T ss_pred hCC
Confidence 553
No 167
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=46.86 E-value=1.2e+02 Score=27.67 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=38.0
Q ss_pred CceEEEE-cCCCCcHHHHHHHHHHHHh---------------------------------hCCCeEEEEcCccchHhHHH
Q 022161 153 KDIIMYL-NSPGGSVTAGMAIFDTIRH---------------------------------IRPDVSTVCVGLAASMGAFL 198 (301)
Q Consensus 153 k~I~L~I-NSPGGsV~ag~aIyd~m~~---------------------------------~~~pV~Tvv~G~AASaaa~I 198 (301)
+.++|-+ +.+||+...+..|...+-. .+.||++.+.+.++|+|-.+
T Consensus 96 ~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~T~SaaE~~ 175 (250)
T cd07563 96 DALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKPVYVLTSPVTFSAAEEF 175 (250)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCCEEEEeCCCcCcHHHHH
Confidence 6666664 4478888888888776640 12478899999999999988
Q ss_pred HhcCCC
Q 022161 199 LSAGTK 204 (301)
Q Consensus 199 l~aG~k 204 (301)
+.+-..
T Consensus 176 a~~lk~ 181 (250)
T cd07563 176 AYALKQ 181 (250)
T ss_pred HHHHHh
Confidence 886544
No 168
>smart00245 TSPc tail specific protease. tail specific protease
Probab=44.09 E-value=1.3e+02 Score=26.34 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=50.2
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEEcC-CCCcHHHHHHHHHHHHhh-------------------------CCCeE
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS-PGGSVTAGMAIFDTIRHI-------------------------RPDVS 184 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~INS-PGGsV~ag~aIyd~m~~~-------------------------~~pV~ 184 (301)
.+..+.+.+.+.+..++.. +.+.++|.+=. +||.+.++..|.+.+-.- ..||+
T Consensus 38 f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 116 (192)
T smart00245 38 FSEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPANLGRKYSKPLV 116 (192)
T ss_pred EChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecCCCcccCCCEE
Confidence 3444556666777777654 46777777644 888888888888766220 14688
Q ss_pred EEEcCccchHhHHHHhcCCC
Q 022161 185 TVCVGLAASMGAFLLSAGTK 204 (301)
Q Consensus 185 Tvv~G~AASaaa~Il~aG~k 204 (301)
+.+.+..+|+|=+++.+-..
T Consensus 117 vL~~~~TaSaaE~~a~~lk~ 136 (192)
T smart00245 117 VLVNEGTASASEIFAGALKD 136 (192)
T ss_pred EEECCCCeeHHHHHHHHHhh
Confidence 88888899998888876543
No 169
>PHA00099 minor capsid protein
Probab=42.76 E-value=1.3e+02 Score=25.91 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=30.0
Q ss_pred HHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceeecCCcccc
Q 022161 249 LSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKI 291 (301)
Q Consensus 249 ~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I~~~~~~a 291 (301)
+.++.|-+++++.+.+.+.. +-+||+.+||+ -.+.+.+|
T Consensus 84 iR~~F~NdP~eml~~L~dp~--NydEa~~LGl~--~~~~p~~a 122 (147)
T PHA00099 84 IRERFGNDPEEMLDFLSDPE--NYDEAKALGLV--YEDGPSGA 122 (147)
T ss_pred HHHHhCCCHHHHHHHHcChh--hHHHHHhccee--eecCcccc
Confidence 45788999999988887665 46899999999 44556555
No 170
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=42.72 E-value=68 Score=27.90 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=25.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhhCCCeEEE
Q 022161 157 MYLNSPGGSVTAGMAIFDTIRHIRPDVSTV 186 (301)
Q Consensus 157 L~INSPGGsV~ag~aIyd~m~~~~~pV~Tv 186 (301)
+.|| ||+.-..+.+|.|+++.+..|++=|
T Consensus 70 IvIN-pga~THTSvAlrDAi~av~iP~vEV 98 (146)
T COG0757 70 IVIN-PGAYTHTSVALRDAIAAVSIPVVEV 98 (146)
T ss_pred EEEc-CccchhhHHHHHHHHHhcCCCEEEE
Confidence 6676 9999999999999999999887644
No 171
>PRK06091 membrane protein FdrA; Validated
Probab=40.97 E-value=62 Score=33.97 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=49.8
Q ss_pred CcEEEEccc-cChhH-HHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccc
Q 022161 122 HRIIRCGGP-VEDDM-ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA 192 (301)
Q Consensus 122 ~rII~L~G~-Idd~~-a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AA 192 (301)
..+|-+|+. +.++. .-.+...|.+|..++.++.|.+|+-=|+-.+.. .+.+.++..++||+++..|.-.
T Consensus 221 S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~--~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 221 THAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRL--KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred EEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHH--HHHHHHhhCCCCEEEEEecCCc
Confidence 346777877 10111 112345667778888899999999888877775 8889888899999999988644
No 172
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=40.36 E-value=1.4e+02 Score=29.43 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=53.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh--------------------------hCCCe
Q 022161 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH--------------------------IRPDV 183 (301)
Q Consensus 131 Idd~~a~~iiaqL~~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~m~~--------------------------~~~pV 183 (301)
.+....+.+.+.|..++..+ .+.++|.+ |-|||.+..+..|.+.+-. ...|+
T Consensus 204 F~~~~~~~~~~~l~~l~~~~-~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv 282 (389)
T PLN00049 204 FNQNASSAVKEAIETLRANG-VDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADGSSAIATSEPL 282 (389)
T ss_pred ccchhHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCCCccccCCCCE
Confidence 34556777888888776653 66777775 6689999999999887721 12488
Q ss_pred EEEEcCccchHhHHHHhcC
Q 022161 184 STVCVGLAASMGAFLLSAG 202 (301)
Q Consensus 184 ~Tvv~G~AASaaa~Il~aG 202 (301)
++.+.+..||++=+++.+=
T Consensus 283 vVLvn~~TaSasEi~a~al 301 (389)
T PLN00049 283 AVLVNKGTASASEILAGAL 301 (389)
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 9999999999998888753
No 173
>PRK11186 carboxy-terminal protease; Provisional
Probab=38.02 E-value=1.4e+02 Score=32.15 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHhhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh-------------------------hCCCeEEE
Q 022161 133 DDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH-------------------------IRPDVSTV 186 (301)
Q Consensus 133 d~~a~~iiaqL~~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~m~~-------------------------~~~pV~Tv 186 (301)
....+.+.++|..++.. +.+.++|-+ |-|||.+..+..|.+.+-. ...|+++.
T Consensus 365 ~~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVL 443 (667)
T PRK11186 365 VGLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVL 443 (667)
T ss_pred cchHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEEE
Confidence 34567778888777664 577888875 6789999999999876421 12488999
Q ss_pred EcCccchHhHHHHhc
Q 022161 187 CVGLAASMGAFLLSA 201 (301)
Q Consensus 187 v~G~AASaaa~Il~a 201 (301)
+.+..||++-+++.+
T Consensus 444 VN~~SASASEIfA~a 458 (667)
T PRK11186 444 VDRYSASASEIFAAA 458 (667)
T ss_pred eCCCCccHHHHHHHH
Confidence 999999999988874
No 174
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=37.72 E-value=2.2e+02 Score=24.61 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=42.9
Q ss_pred CcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccchH
Q 022161 122 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASM 194 (301)
Q Consensus 122 ~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AASa 194 (301)
.||.++|+. +++.+.+.+.| +...+.-.|.-+-+-|=+..... .|.+.|+..+++++-++.|.=-.-
T Consensus 47 ~~v~llG~~--~~~~~~~~~~l---~~~yp~l~i~g~~~g~~~~~~~~-~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 47 LRVFLLGAK--PEVLEKAAERL---RARYPGLKIVGYHHGYFGPEEEE-EIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred CeEEEECCC--HHHHHHHHHHH---HHHCCCcEEEEecCCCCChhhHH-HHHHHHHHcCCCEEEEECCCCHHH
Confidence 466666653 44555555454 34445545555566666655444 499999999999999998865444
No 175
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=37.03 E-value=2.1e+02 Score=26.64 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHhhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHhhC-------------------------------
Q 022161 133 DDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRHIR------------------------------- 180 (301)
Q Consensus 133 d~~a~~iiaqL~~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~m~~~~------------------------------- 180 (301)
....+.+.+.+..++.. ..+.++|-+ +-|||.+..+..|.+.+-.-.
T Consensus 76 ~~~~~~l~~a~~~l~~~-~~~~LIlDLR~N~GG~~~~a~~las~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
T cd07561 76 SGYDDELNQAFAEFKAQ-GVTELVLDLRYNGGGLVSSANLLASLLAPAVALGQVFATLEYNDKRSANNEDLLFSSKTLAG 154 (256)
T ss_pred cchHHHHHHHHHHHHHc-CCCeEEEEeCCCCCccHHHHHHHHHHhcCcccCCCeEEEEEecCCccCCCceeecccccccc
Confidence 34667788888877765 466777764 569999999999887776410
Q ss_pred ------CCeEEEEcCccchHhHHHHhcC
Q 022161 181 ------PDVSTVCVGLAASMGAFLLSAG 202 (301)
Q Consensus 181 ------~pV~Tvv~G~AASaaa~Il~aG 202 (301)
.||++.+.+..||+|=+++.+=
T Consensus 155 ~~~~~~~pv~VL~~~~TASAaE~~a~~L 182 (256)
T cd07561 155 GNSLNLSKVYVLTSGSTASASELVINSL 182 (256)
T ss_pred cCcCCcccEEEEECCCcccHHHHHHHHh
Confidence 2567777777778777777654
No 176
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=36.08 E-value=1.1e+02 Score=29.26 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=42.9
Q ss_pred CcEEEEccccC--hhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHh-hCCCeEEEEcCccc
Q 022161 122 HRIIRCGGPVE--DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH-IRPDVSTVCVGLAA 192 (301)
Q Consensus 122 ~rII~L~G~Id--d~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~-~~~pV~Tvv~G~AA 192 (301)
..+|-+|...+ -+. .+-|.|+..++.++.|.||+-+-|-....+ ...++. .++||+++-.|...
T Consensus 171 S~~Vs~Gn~a~~dv~~----~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~---~~~~~~~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 171 STCVGIGGDPVNGTSF----IDVLEAFEKDPETEAIVMIGEIGGSAEEEA---ADFIKQNMSKPVVGFIAGATA 237 (286)
T ss_pred EEEEEeCCCcCCCCCH----HHHHHHHhhCCCCcEEEEEEecCCchHHHH---HHHHHhcCCCCEEEEEecCCC
Confidence 35678888844 333 345567778888999999999654433322 334444 66899999888754
No 177
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=31.41 E-value=1.6e+02 Score=22.97 Aligned_cols=77 Identities=27% Similarity=0.309 Sum_probs=47.7
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCC--------CCceEEEEcCCCC-cHHHHHHHHHHHHhhC-CCeEEEEcCccc
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDP--------NKDIIMYLNSPGG-SVTAGMAIFDTIRHIR-PDVSTVCVGLAA 192 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L~~~d~--------~k~I~L~INSPGG-sV~ag~aIyd~m~~~~-~pV~Tvv~G~AA 192 (301)
.|+.+.|+++...++.+.+.+..+....+ .+.|+|.+..--. +..+...|.+..+.++ ..+..+..|..-
T Consensus 11 ~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 11 LIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp EEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred EEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 68999999999999999999987665543 3566666544333 2334444455555544 345555555544
Q ss_pred hHhHHHH
Q 022161 193 SMGAFLL 199 (301)
Q Consensus 193 Saaa~Il 199 (301)
..--.+-
T Consensus 91 ~v~~~l~ 97 (117)
T PF01740_consen 91 DVRRILE 97 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4443333
No 178
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=31.34 E-value=1.1e+02 Score=29.10 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=42.8
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEE
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVC 187 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv 187 (301)
||+|+|.-+...--..+...|..+..+.+.+-++.--....|..--...+++.|.....+|.|..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEcc
Confidence 68899888776545556666666766554432322233333333446889999999999999885
No 179
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=31.21 E-value=2.3e+02 Score=23.63 Aligned_cols=69 Identities=14% Similarity=0.302 Sum_probs=41.8
Q ss_pred chhhhhc--CCcEEEEccccChh---HHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEE
Q 022161 114 NVLSQLF--QHRIIRCGGPVEDD---MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVST 185 (301)
Q Consensus 114 dv~s~L~--~~rII~L~G~Idd~---~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~T 185 (301)
+....+. +.+|..++|.=|+. ..+.|.+.+..+. +..+.+.+..+= ||++.......+.++.-...+++
T Consensus 18 ~~~~~~~g~~~~i~~~gg~~d~~~gt~~~~I~~ai~~~~--~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~~~v~ 91 (125)
T TIGR02364 18 ELIKQMAGDDVTIISAGGTDDGRLGTSPDKIIEAIEKAD--NEADGVLIFYDL-GSAVMNAEMAVELLEDEDRDKVH 91 (125)
T ss_pred HHHHHHcCCCccEEEEecCCCCCccchHHHHHHHHHHhc--CCCCCEEEEEcC-CCcHhHHHHHHHHhccccccEEE
Confidence 3444443 46788887765543 3455555554332 225689999999 99998776666766643333333
No 180
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=30.10 E-value=77 Score=21.53 Aligned_cols=32 Identities=16% Similarity=0.038 Sum_probs=25.5
Q ss_pred HHHHHHhhCCCHHHHHhhhcCCcccCHHHHHH
Q 022161 246 NGYLSYHTGQTLEKINEDTDRDFFMSAEEAKD 277 (301)
Q Consensus 246 ~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e 277 (301)
..-+|+.+|.+...|.++..+....+.+.+.+
T Consensus 12 ~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ 43 (55)
T PF01381_consen 12 QKELAEKLGISRSTISRIENGKRNPSLDTLKK 43 (55)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHH
T ss_pred HHHHHHHhCCCcchhHHHhcCCCCCCHHHHHH
Confidence 34578999999999999998888888887765
No 181
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=29.72 E-value=1.3e+02 Score=26.12 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=35.0
Q ss_pred HHHHHHhhhhcCCCCceEEEEcCC-CCcHHHHHHHHHHHHhhC-----CCeEEEEcCccch
Q 022161 139 IVAQLLYLDAVDPNKDIIMYLNSP-GGSVTAGMAIFDTIRHIR-----PDVSTVCVGLAAS 193 (301)
Q Consensus 139 iiaqL~~L~~~d~~k~I~L~INSP-GGsV~ag~aIyd~m~~~~-----~pV~Tvv~G~AAS 193 (301)
+...|..+..++.++.|.|.+==. |..-..+..|...++..+ .||++.+.|..+-
T Consensus 61 ~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 61 RNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 444555555555566655555444 334567778888887764 6788888887665
No 182
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=28.60 E-value=1.9e+02 Score=27.70 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=40.9
Q ss_pred CcEEEEccccC--hhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHh-hCCCeEEEEcCccc
Q 022161 122 HRIIRCGGPVE--DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH-IRPDVSTVCVGLAA 192 (301)
Q Consensus 122 ~rII~L~G~Id--d~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~-~~~pV~Tvv~G~AA 192 (301)
..+|-+|...+ -+ +.+-|.|+..++.++.|.||+-+-|-.-.. ....+.. .++||+++-.|...
T Consensus 173 s~~Vs~Gn~~~~dv~----~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~---a~~~~~~~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 173 STCVGIGGDPINGTN----FIDVLEAFEEDPETEAIVMIGEIGGSAEEE---AAEYIKANVTKPVVGYIAGVTA 239 (291)
T ss_pred EEEEEeCCCcCCCCC----HHHHHHHHhhCCCCcEEEEEEecCCcHHHH---HHHHHHHcCCCCEEEEEecCCC
Confidence 35678888733 22 234566778888899999999943322112 1233333 37999999988754
No 183
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=27.07 E-value=1.1e+02 Score=23.24 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=21.7
Q ss_pred HHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 022161 245 LNGYLSYHTGQTLEKINEDTDRDFFMSAE 273 (301)
Q Consensus 245 ~~~i~A~~tG~s~e~I~~~~~rd~~lTa~ 273 (301)
+.+.+|+.+|.+..++.+++..... |++
T Consensus 46 ~~~~lAk~~G~t~~~l~~~~~~Gki-t~~ 73 (75)
T TIGR02675 46 ALQALAKAMGVTRGELRKMLSDGKL-TAD 73 (75)
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCC-ccc
Confidence 4567899999999999999876543 554
No 184
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.02 E-value=1.6e+02 Score=24.39 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=39.1
Q ss_pred CcEEEEccccChhH--HHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHH--HHHHHHhhCCCeEEEEcCc
Q 022161 122 HRIIRCGGPVEDDM--ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA--IFDTIRHIRPDVSTVCVGL 190 (301)
Q Consensus 122 ~rII~L~G~Idd~~--a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~a--Iyd~m~~~~~pV~Tvv~G~ 190 (301)
+||+++|.-|.... ...+...| ....+...+.+.--+-+|.....+. +...+...+++++++..|.
T Consensus 2 ~~v~~~GDSit~g~~~~~~~~~~l---~~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~G~ 71 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVETYL---AARYPELKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGI 71 (191)
T ss_pred CEEEEeCCChhhccccHHHHHHHH---HHhCCCCCcEEEEcccCccchhhhhhhhhcccccCCCCEEEEEeec
Confidence 58999998888754 33333333 3333444677766666676655442 3333444556788887763
No 185
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.72 E-value=2.2e+02 Score=26.00 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=51.1
Q ss_pred cchhhcchhh----hhcCCcEEEEccccChhH----HHHHHHHHHh-hhhcCCCCceEEEEcCCC-CcHHHHHHHHHHHH
Q 022161 108 LLGRFQNVLS----QLFQHRIIRCGGPVEDDM----ANIIVAQLLY-LDAVDPNKDIIMYLNSPG-GSVTAGMAIFDTIR 177 (301)
Q Consensus 108 ~~~~~~dv~s----~L~~~rII~L~G~Idd~~----a~~iiaqL~~-L~~~d~~k~I~L~INSPG-GsV~ag~aIyd~m~ 177 (301)
++|...|++. ..|+.+.--|+|.|++-. -+.-+..|.. ++ ++..+.|+|=+|+.= |..+ +.-|.+.++
T Consensus 83 VVE~~~Dv~aiE~~~~y~G~YhVL~G~iSPldgigp~~l~i~~L~~Ri~-~~~v~EVIlAt~~tvEGe~T-a~yi~~~lk 160 (195)
T TIGR00615 83 VVEDPKDVFALEKTKEFRGRYHVLGGHISPLDGIGPEDLTIAALLKRLQ-EESVKEVILATNPTVEGEAT-ALYIARLLQ 160 (195)
T ss_pred EECCHHHHHHHHhhCccceEEEEccCccCccCCCChhhcCHHHHHHHHh-cCCCcEEEEeCCCCchHHHH-HHHHHHHhh
Confidence 4566667755 477888888888876521 1222344432 33 346889999988654 5554 456888888
Q ss_pred hhCCCeEEEEcCc
Q 022161 178 HIRPDVSTVCVGL 190 (301)
Q Consensus 178 ~~~~pV~Tvv~G~ 190 (301)
....+|+=+..|+
T Consensus 161 ~~~ikvtRlA~Gi 173 (195)
T TIGR00615 161 PFGVKVTRIASGL 173 (195)
T ss_pred hcCCcEEeeeecC
Confidence 7666666666554
No 186
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=26.14 E-value=1.2e+02 Score=24.34 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=26.8
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCC
Q 022161 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG 163 (301)
Q Consensus 124 II~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPG 163 (301)
++.+.|.||...+..+.+.+...-.....+. +.||--|
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~~--ivIDls~ 53 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAASGARG--LVIDLSG 53 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcCCCcE--EEEECCC
Confidence 7889999999999999988874333333333 5555555
No 187
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=26.09 E-value=2.7e+02 Score=20.50 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=48.8
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCC-cHHHHHHHHHHHHhhC-CCeEEEEcCccchHhHHHHh
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG-SVTAGMAIFDTIRHIR-PDVSTVCVGLAASMGAFLLS 200 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGG-sV~ag~aIyd~m~~~~-~pV~Tvv~G~AASaaa~Il~ 200 (301)
.++.+.|+++...+..+.+++....... .+.|.|.+..-.. +..+...|....+... ..+...+.|.-....-++-.
T Consensus 10 ~ii~l~G~l~~~~~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~~ 88 (99)
T cd07043 10 LVVRLSGELDAATAPELREALEELLAEG-PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLEL 88 (99)
T ss_pred EEEEEeceecccchHHHHHHHHHHHHcC-CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 5788999999998888888876654332 4566655444333 2344445555555554 35666666666666655555
Q ss_pred cC
Q 022161 201 AG 202 (301)
Q Consensus 201 aG 202 (301)
+|
T Consensus 89 ~g 90 (99)
T cd07043 89 TG 90 (99)
T ss_pred hC
Confidence 54
No 188
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=25.71 E-value=1.5e+02 Score=28.40 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=47.5
Q ss_pred hcCCcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcH--HHHHHHHHH
Q 022161 119 LFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSV--TAGMAIFDT 175 (301)
Q Consensus 119 L~~~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV--~ag~aIyd~ 175 (301)
....|+.-..+.++......+.++|..|+++...+-+++.|.|-||.- ..+..++|.
T Consensus 31 ~~~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~ 89 (271)
T COG1512 31 TLSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDK 89 (271)
T ss_pred cccceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 345688889999999999999999999999888888899999999885 345556666
No 189
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.60 E-value=4.7e+02 Score=23.05 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=40.5
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEcCccchH
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASM 194 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~G~AASa 194 (301)
++.++|+. +++++...+.|. ..-|.-.|.-+ + +.-+-.+..+|.+.|+..++++.-+..|.=---
T Consensus 50 ~vfllG~~--~~v~~~~~~~l~---~~yP~l~i~g~-~-g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE 114 (177)
T TIGR00696 50 PIFLYGGK--PDVLQQLKVKLI---KEYPKLKIVGA-F-GPLEPEERKAALAKIARSGAGIVFVGLGCPKQE 114 (177)
T ss_pred eEEEECCC--HHHHHHHHHHHH---HHCCCCEEEEE-C-CCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhH
Confidence 66666653 556666666653 33344444433 3 222344567899999999999999988754443
No 190
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=25.39 E-value=1.6e+02 Score=27.49 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=44.9
Q ss_pred EEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCeEE
Q 022161 125 IRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVST 185 (301)
Q Consensus 125 I~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~~pV~T 185 (301)
+.-+++|-..+...+..++..++ .+-..+.+|+||+.++++.++-+.+++.+..+.|
T Consensus 51 ~~atPaiaaG~~~el~r~~~~~d----gr~l~VvVse~~a~~da~sal~~lir~~G~y~~t 107 (245)
T COG3904 51 ISATPAIAAGTPAELKRTLKTLD----GRQLPVVVSEPGANVDAASALGRLIRKAGLYIAT 107 (245)
T ss_pred hcCCCcccCCCHHHHHHhhhhcc----CceeeEEEcCCCCCccHHHHHHHHHhccCceeEE
Confidence 34456677766667777765442 4578899999999999999999999999988777
No 191
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=24.78 E-value=3.2e+02 Score=22.68 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=26.7
Q ss_pred HHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCceee
Q 022161 249 LSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGV 284 (301)
Q Consensus 249 ~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GLID~I 284 (301)
+.++.|-++++..+++.+.. .-+||+.+||.|.-
T Consensus 54 vRe~FgNdPeeml~~L~d~~--nyde~~algll~~e 87 (114)
T TIGR02763 54 VRENFGNDPEEMLSWLEDEA--NYDEVEALGLLDPE 87 (114)
T ss_pred HHHHhCCCHHHHHHHHhChh--hHHHHHHhcccccc
Confidence 45788999999988876544 24789999999975
No 192
>smart00250 PLEC Plectin repeat.
Probab=24.55 E-value=49 Score=21.67 Aligned_cols=17 Identities=47% Similarity=0.401 Sum_probs=14.5
Q ss_pred cccCHHHHHHcCCceee
Q 022161 268 FFMSAEEAKDYGLIDGV 284 (301)
Q Consensus 268 ~~lTa~EA~e~GLID~I 284 (301)
.-||-.||++.||||..
T Consensus 20 ~~lsv~eA~~~glid~~ 36 (38)
T smart00250 20 QKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCcCHHHHHHcCCCCcc
Confidence 45799999999999974
No 193
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.21 E-value=5e+02 Score=27.32 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=70.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhCCCeEEEEc--Cccc-----hHhHHHHhcCCCCceEecCCeEEEeecCCCCCCCC
Q 022161 155 IIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV--GLAA-----SMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGG 227 (301)
Q Consensus 155 I~L~INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~--G~AA-----Saaa~Il~aG~kgkR~a~PnS~imIHqp~~g~~G~ 227 (301)
....|=+|+=+|+--..|.+.=+.-++-|+++|. |+.= =.++||+.-.- ++||.-.-+...|.
T Consensus 352 aLvQILTP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkf----------rVLIAACDTFRsGA 421 (587)
T KOG0781|consen 352 ALVQILTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKF----------RVLIAACDTFRSGA 421 (587)
T ss_pred HHHHHcCCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCc----------eEEEEeccchhhhH
Confidence 3455667888776555554444433444566553 5543 47888887643 35666555556788
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCC
Q 022161 228 QSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGL 280 (301)
Q Consensus 228 ~~di~~~akel~~~k~~~~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~GL 280 (301)
.+.+....+.+..+..-+..++.+..|++...|.+.. -+||...|+
T Consensus 422 vEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~A-------I~~a~~~gf 467 (587)
T KOG0781|consen 422 VEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEA-------IQEARNQGF 467 (587)
T ss_pred HHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHH-------HHHHHhcCC
Confidence 8888877777777777788889999999987775432 345555554
No 194
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.72 E-value=63 Score=28.66 Aligned_cols=29 Identities=34% Similarity=0.764 Sum_probs=20.4
Q ss_pred CC-CcHHHHH------HHHHHHHhhCCCeEEEEcCc
Q 022161 162 PG-GSVTAGM------AIFDTIRHIRPDVSTVCVGL 190 (301)
Q Consensus 162 PG-GsV~ag~------aIyd~m~~~~~pV~Tvv~G~ 190 (301)
|| |...+++ .+.+.++..+.||..+|.|+
T Consensus 45 PG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG~ 80 (196)
T PRK13170 45 PGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGM 80 (196)
T ss_pred CCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHHH
Confidence 88 7766663 34677777778888888663
No 195
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=22.62 E-value=2e+02 Score=27.03 Aligned_cols=64 Identities=20% Similarity=0.158 Sum_probs=43.3
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEE--EcCCCCcHHHHHHHHHHHHhhCCCeEEEEc
Q 022161 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMY--LNSPGGSVTAGMAIFDTIRHIRPDVSTVCV 188 (301)
Q Consensus 123 rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~--INSPGGsV~ag~aIyd~m~~~~~pV~Tvv~ 188 (301)
||+|+|.-+...-...+...|..+..+.+. ++.+. =|.-||. --...+++.|.....++.|.-.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~-D~vi~NgEn~~gg~-gl~~~~~~~L~~~G~D~iTlGN 66 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKI-DFVIANGENAAGGK-GITPKIAKELLSAGVDVITMGN 66 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCC-CEEEECCccccCCC-CCCHHHHHHHHhcCCCEEEecc
Confidence 689999888877777777777777665433 33332 2344552 1236889999999999888854
No 196
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=22.59 E-value=1.8e+02 Score=19.39 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=22.8
Q ss_pred HHHHHHhhCCCHHHHHhhhcCCcccCHHHHHH
Q 022161 246 NGYLSYHTGQTLEKINEDTDRDFFMSAEEAKD 277 (301)
Q Consensus 246 ~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e 277 (301)
..-+|+..|.+...|.++..+..-.+.+++..
T Consensus 18 q~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~ 49 (58)
T TIGR03070 18 QADLADLAGVGLRFIRDVENGKPTVRLDKVLR 49 (58)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHH
Confidence 44578889999999988877665556665443
No 197
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=22.50 E-value=5e+02 Score=23.90 Aligned_cols=83 Identities=22% Similarity=0.169 Sum_probs=49.2
Q ss_pred hhhcCCcEEEEccc-cChhHHHHHHHHHHhhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh----------------
Q 022161 117 SQLFQHRIIRCGGP-VEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH---------------- 178 (301)
Q Consensus 117 s~L~~~rII~L~G~-Idd~~a~~iiaqL~~L~~~d~~k~I~L~I-NSPGGsV~ag~aIyd~m~~---------------- 178 (301)
.++..++|-||.-+ +.+...+.+.++++ .....+.++|.+ +-+||.+. ..|.+.+..
T Consensus 82 ~~~~~~~igYi~i~~~~~~~~~~~~~~~~---~~~~~~glIiDlR~N~GG~~~--~~l~~~~~~~~~~~~~~r~~~~~~~ 156 (266)
T cd07562 82 EELSDGRIGYVHIPDMGDDGFAEFLRDLL---AEVDKDGLIIDVRFNGGGNVA--DLLLDFLSRRRYGYDIPRGGGKPVT 156 (266)
T ss_pred HHhcCCcEEEEEeCCCChHHHHHHHHHHH---hcCCCceEEEEecCCCCCcHH--HHHHHHhCCCceEEEccCCCCCCCC
Confidence 34555677665433 24444444444443 222267888776 34666633 334444321
Q ss_pred -----hCCCeEEEEcCccchHhHHHHhcCCC
Q 022161 179 -----IRPDVSTVCVGLAASMGAFLLSAGTK 204 (301)
Q Consensus 179 -----~~~pV~Tvv~G~AASaaa~Il~aG~k 204 (301)
.+.||++++.+.++|+|-+++.+-..
T Consensus 157 ~p~~~~~~pv~vL~~~~t~SaaE~~a~~lk~ 187 (266)
T cd07562 157 YPSGRWRGPVVVLVNEGSASDAEIFAYGFRA 187 (266)
T ss_pred CcccccCCCEEEEECCCCCchHHHHHHHHHH
Confidence 24689999999999999998886543
No 198
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=22.35 E-value=1.3e+02 Score=27.39 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhC
Q 022161 136 ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR 180 (301)
Q Consensus 136 a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~~ 180 (301)
...|..+.+.+..-...|.|-+|++.++|.|+.+.-|-++++.=+
T Consensus 31 s~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~gK 75 (200)
T KOG3093|consen 31 SEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDGK 75 (200)
T ss_pred HHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcCC
Confidence 344555555544445678999999999999999988888777643
No 199
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=22.25 E-value=1.6e+02 Score=27.39 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhCCCHHHHHhhh-----cCCcccCHHHHHHcCCceeecCCc
Q 022161 242 KANLNGYLSYHTGQTLEKINEDT-----DRDFFMSAEEAKDYGLIDGVVMNP 288 (301)
Q Consensus 242 k~~~~~i~A~~tG~s~e~I~~~~-----~rd~~lTa~EA~e~GLID~I~~~~ 288 (301)
++.+.++|. ..|++++..+... +.+.|+...-..|+|+.++...+|
T Consensus 100 ~~el~~iy~-~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~e~g~~~~~~~~P 150 (234)
T cd02433 100 AAELALIYR-AKGLDEEEAKRVASQLMNDPEQALDTLAREELGLDPELLGNP 150 (234)
T ss_pred HHHHHHHHH-HcCCCHHHHHHHHHHHHhCcchhHHHHHHHhcCCCccccCCH
Confidence 456777774 4599988766543 345677777778899987755554
No 200
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=21.60 E-value=1.4e+02 Score=27.96 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=30.6
Q ss_pred eEEEEcCCC-CcHHHHHHHHHHHHhhCCCeEEEEcCc
Q 022161 155 IIMYLNSPG-GSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (301)
Q Consensus 155 I~L~INSPG-GsV~ag~aIyd~m~~~~~pV~Tvv~G~ 190 (301)
|.+.+..+| |-++-+++|.+.|+. +.+|..++.|.
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 788899999 999999999999998 77777666665
No 201
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=21.51 E-value=2e+02 Score=26.52 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=32.6
Q ss_pred HHHHHHhhCCCHHHHHhhhcCCcccCHHHH---------------------HHcCCceeecCCccc
Q 022161 246 NGYLSYHTGQTLEKINEDTDRDFFMSAEEA---------------------KDYGLIDGVVMNPHK 290 (301)
Q Consensus 246 ~~i~A~~tG~s~e~I~~~~~rd~~lTa~EA---------------------~e~GLID~I~~~~~~ 290 (301)
.+++++.+|.+.+.+.+.+.+..|.+.++. ++.|+|+....+...
T Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~ 292 (300)
T TIGR01729 227 VQKMAKLIGGDAEGVPQLLKGLSFPTADEQVSDKWLGGGAVKALEASAKFLKEQGKVDAVLDDYSP 292 (300)
T ss_pred HHHHHHHhCcCHHHHHHHHhcCCCCCHHHhhhhhhcCchHHHHHHHHHHHHHHcCCcCccchhhHh
Confidence 366788899999999998887777776553 477888875544433
No 202
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=21.24 E-value=2.2e+02 Score=28.70 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=45.3
Q ss_pred CcEEEEccccChhHHHHHHHHHHhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhh--CCCeEEEEcCccc
Q 022161 122 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI--RPDVSTVCVGLAA 192 (301)
Q Consensus 122 ~rII~L~G~Idd~~a~~iiaqL~~L~~~d~~k~I~L~INSPGGsV~ag~aIyd~m~~~--~~pV~Tvv~G~AA 192 (301)
...|-+|...|-+. ..-|.|+..++.++.|.||+-+- ..+....+..+.. ++||+++..|...
T Consensus 178 s~~vs~Gn~~d~~~----~d~l~~l~~D~~t~~I~ly~E~~----~~~~~f~~aa~~a~~~KPVv~~k~Grs~ 242 (447)
T TIGR02717 178 SYFVSLGNKADIDE----SDLLEYLADDPDTKVILLYLEGI----KDGRKFLKTAREISKKKPIVVLKSGTSE 242 (447)
T ss_pred ceEEECCchhhCCH----HHHHHHHhhCCCCCEEEEEecCC----CCHHHHHHHHHHHcCCCCEEEEecCCCh
Confidence 45678887765433 34566777888899999999964 3455666666665 5899999988754
No 203
>PRK14635 hypothetical protein; Provisional
Probab=20.40 E-value=2e+02 Score=25.06 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=24.3
Q ss_pred cccChhHHHHHHHHHHh-hhhcCCCCceEEEEcCCCCc
Q 022161 129 GPVEDDMANIIVAQLLY-LDAVDPNKDIIMYLNSPGGS 165 (301)
Q Consensus 129 G~Idd~~a~~iiaqL~~-L~~~d~~k~I~L~INSPGGs 165 (301)
|.|+-+.+..+-+.+-. |+..++..+-.|-+.|||=+
T Consensus 48 ~gv~lddC~~vSr~is~~LD~~d~~~~Y~LEVSSPGld 85 (162)
T PRK14635 48 GSVSLLECEQVSRKLKEELERISPDLDFTLKVSSAGAE 85 (162)
T ss_pred CCcCHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCC
Confidence 34666666666555532 45445557889999999943
No 204
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=20.37 E-value=57 Score=22.23 Aligned_cols=19 Identities=42% Similarity=0.375 Sum_probs=14.8
Q ss_pred CCcccCHHHHHHcCCceee
Q 022161 266 RDFFMSAEEAKDYGLIDGV 284 (301)
Q Consensus 266 rd~~lTa~EA~e~GLID~I 284 (301)
....|+-+||++.||||.-
T Consensus 18 tg~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 18 TGERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TTEEEEHHHHHHTTSS-HH
T ss_pred CCeEEcHHHHHHCCCcCHH
Confidence 3456899999999999973
No 205
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=20.35 E-value=2.6e+02 Score=24.45 Aligned_cols=32 Identities=13% Similarity=-0.041 Sum_probs=27.5
Q ss_pred HHHHHhhCCCHHHHHhhhcCCcccCHHHHHHc
Q 022161 247 GYLSYHTGQTLEKINEDTDRDFFMSAEEAKDY 278 (301)
Q Consensus 247 ~i~A~~tG~s~e~I~~~~~rd~~lTa~EA~e~ 278 (301)
+-+|++.|++...+....-+...+++++|+..
T Consensus 25 e~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kl 56 (150)
T TIGR00673 25 ADIADGLGLAEVFVAAALYGQAAAPADEARLV 56 (150)
T ss_pred HHHHHHHCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 34689999999999998888899999999875
Done!