BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022163
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A +R+ Q+ ++ +P + PL NI EW + +RGP T +EGG YHG++ P E+P
Sbjct: 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 74
Query: 72 FKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 131
FKPPS ++TPNGRF+ T++CLSI++ HP+ W P+WSV T L L++FM LGS
Sbjct: 75 FKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM-VEKGPTLGS 133
Query: 132 LDYKKEERRALAIKS 146
++ +R LA++S
Sbjct: 134 IETSDFTKRQLAVQS 148
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E++++Q +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 7 ALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYP 66
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ +V L+++ + + +PN
Sbjct: 67 FKPPKVAFTTKIYHPN--INSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 119
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 21/125 (16%)
Query: 14 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
K +L E+K +Q P + F ++L E +++ W+ AI GP +T +EGG + R++ P +YP+
Sbjct: 10 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69
Query: 73 KPPSFMLLT----PNGRFETQTKICLSISNHHP------------EHWQPSWSVRTALVA 116
PP+F LT PN +ET +C+SI HP E W P+ +VRT L++
Sbjct: 70 SPPAFRFLTKMWHPN-IYET-GDVCISI--LHPPVDDPQSGELPSERWNPTQNVRTILLS 125
Query: 117 LIAFM 121
+I+ +
Sbjct: 126 VISLL 130
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + + P+ +++F WQ I GP D+ + GG++ I P++YP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN +Q ICL I + W P+ ++ L+++ + + T+PN
Sbjct: 82 FKPPKVNFTTKIYHPN--INSQGAICLDILK---DQWSPALTISKVLLSISSLL-TDPN 134
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 21/125 (16%)
Query: 14 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
K +L E+K +Q P + F ++L E +++ W+ AI GP +T +EGG + R++ P +YP+
Sbjct: 7 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 66
Query: 73 KPPSFMLLT----PNGRFETQTKICLSISNHHP------------EHWQPSWSVRTALVA 116
PP+F LT PN +ET +C+SI HP E W P+ +VRT L++
Sbjct: 67 SPPAFRFLTKMWHPN-IYET-GDVCISI--LHPPVDDPQSGELPSERWNPTQNVRTILLS 122
Query: 117 LIAFM 121
+I+ +
Sbjct: 123 VISLL 127
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++Q +P + P+ +++F WQ I GP D+ ++GG++ + P +YP
Sbjct: 20 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 79
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ +V L+++ + + +PN
Sbjct: 80 FKPPKIAFTTKIYHPN--INSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 132
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++Q +P + P+ +++F WQ I GP D+ ++GG++ + P +YP
Sbjct: 4 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 63
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ +V L+++ + + +PN
Sbjct: 64 FKPPKIAFTTKIYHPN--INSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 116
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++Q +P + P+ +++F WQ I GP D+ ++GG++ + P +YP
Sbjct: 8 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ +V L+++ + + +PN
Sbjct: 68 FKPPKIAFTTKIYHPN--INSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 120
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ + GG++ I P +YP
Sbjct: 2 ALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I + W P+ ++ L+++ + + T+PN
Sbjct: 62 FKPPKVNFTTRIYHPN--INSNGSICLDILR---DQWSPALTISKVLLSISSLL-TDPN 114
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 80 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 132
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 7 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 66
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 67 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 119
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A++RI +E++E+Q +P + + P+ ++IF W I GP D+ ++GG++ + P +YP
Sbjct: 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64
Query: 72 FKPP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FK P +FM + ICL I + W P+ ++ L+++ + + T+PN
Sbjct: 65 FKAPRVTFMTKVYHPNINKNGVICLDILK---DQWSPALTLSRVLLSISSLL-TDPN 117
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 62 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 114
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 12 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 72 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 124
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 61 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 113
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 10 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 69
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 70 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 122
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 12 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 72 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 124
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWGPALTISKVLLSICSLL-CDPN 116
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI +E+ +++ +P + P+ ++++ WQ +I GP D+ + GG++ I P +YPFK
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 74 PP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP-TNPNGAL 129
PP SF + ICL I + W P+ ++ L+++ + + NP+ L
Sbjct: 65 PPKISFTTKIYHPNINANGNICLDILK---DQWSPALTLSKVLLSICSLLTDANPDDPL 120
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 29/144 (20%)
Query: 7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
++ A+KR++ E K++ NP + ++ P+ EEN FEW+ I GP DT FE G++ +
Sbjct: 2 HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 61
Query: 66 LPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQP 106
P +YP PP + P+GR +C+SI H P E W P
Sbjct: 62 FPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSP 114
Query: 107 SWSVRTALVALIAFM--PTNPNGA 128
SV L+++++ + P + +GA
Sbjct: 115 VQSVEKILLSVVSMLAEPNDESGA 138
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPN--INSNGSICLDALR---SQWSPALTISKVLLSICSLL-CDPN 116
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 29/144 (20%)
Query: 7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
++ A+KR++ E K++ NP + ++ P+ EEN FEW+ I GP DT FE G++ +
Sbjct: 3 HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 62
Query: 66 LPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQP 106
P +YP PP + P+GR +C+SI H P E W P
Sbjct: 63 FPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSP 115
Query: 107 SWSVRTALVALIAFM--PTNPNGA 128
SV L+++++ + P + +GA
Sbjct: 116 VQSVEKILLSVVSMLAEPNDESGA 139
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 29/139 (20%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A+KR++ E K++ NP + ++ P+ EEN FEW+ I GP DT FE G++ + P +Y
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 71 PFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVR 111
P PP + P+GR +C+SI H P E W P SV
Sbjct: 64 PLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVE 116
Query: 112 TALVALIAFM--PTNPNGA 128
L+++++ + P + +GA
Sbjct: 117 KILLSVVSMLAEPNDESGA 135
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 29/139 (20%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A+KR++ E K++ NP + ++ P+ EEN FEW+ I GP DT FE G++ + P +Y
Sbjct: 10 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 69
Query: 71 PFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVR 111
P PP + P+GR +C+SI H P E W P SV
Sbjct: 70 PLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVE 122
Query: 112 TALVALIAFM--PTNPNGA 128
L+++++ + P + +GA
Sbjct: 123 KILLSVVSMLAEPNDESGA 141
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++Q +P + P+ +++F WQ I GP D+ ++GG++ + P +YP
Sbjct: 8 ALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + I L I W P+ +V L+++ + + +PN
Sbjct: 68 FKPPKIAFTTKIYHPN--INSNGSIKLDILR---SQWSPALTVSKVLLSICSLL-CDPN 120
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E++++ +P + P+ +++F WQ I GP ++ ++GG++ I P +YP
Sbjct: 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + ICL I W P+ ++ L+++ + + +PN
Sbjct: 65 FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 117
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 5 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 64
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + I L I W P+ ++ L+++ + + +PN
Sbjct: 65 FKPPKVAFTTRIYHPN--INSNGSISLDILR---SQWSPALTISKVLLSICSLL-CDPN 117
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI +E + + + P M++P+ EN + I GP T +EGG Y + LP +YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 74 PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
PP LT PN + +ICL I + W P+ +RT L+++ A +
Sbjct: 64 PPKVRFLTKIYHPN--IDKLGRICLDILK---DKWSPALQIRTVLLSIQALL 110
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI +E + + + P M++P+ EN + I GP T +EGG Y + LP +YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 74 PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
PP LT PN + +ICL I + W P+ +RT L+++ A +
Sbjct: 64 PPKVRFLTKIYHPN--IDKLGRICLDILK---DKWSPALQIRTVLLSIQALL 110
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + I L I W P+ ++ L+++ + + +PN
Sbjct: 80 FKPPKVAFTTRIYHPN--INSNGSIXLDILR---SQWSPALTISKVLLSICSLL-CDPN 132
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 14/143 (9%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI++E +++ S+P + P ++N+ +Q I GP + +E GI+ + LP +YP +
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 74 PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
P LT PN + +ICL + +W P+ +RT L+++ A + + NPN
Sbjct: 68 APKVRFLTKIYHPN--IDRLGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDP 122
Query: 129 LG---SLDYKKEERRALAIKSRE 148
L + D+ K E+ A A K+RE
Sbjct: 123 LANDVAEDWIKNEQGAKA-KARE 144
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 14/143 (9%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI++E +++ S+P + P ++N+ +Q I GP + +E GI+ + LP +YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74 PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
P LT PN + +ICL + +W P+ +RT L+++ A + + NPN
Sbjct: 66 APKVRFLTKIYHPN--IDRLGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 129 LG---SLDYKKEERRALAIKSRE 148
L + D+ K E+ A A K+RE
Sbjct: 121 LANDVAEDWIKNEQGAKA-KARE 142
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + I L I W P+ ++ L+++ + + +PN
Sbjct: 62 FKPPKVAFTTRIYHPN--INSNGSISLDILR---SQWSPALTISKVLLSICSLL-CDPN 114
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
L + + KRI +E+ ++ +P + + P +NI+EW+ I GP + +EGG++ I
Sbjct: 45 LLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFT 104
Query: 68 AEYPFKPP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP-TN 124
EYPFKPP +F + +Q ICL I ++W P+ ++ L+++ + + N
Sbjct: 105 PEYPFKPPKVTFRTRIYHCNINSQGVICLDILK---DNWSPALTISKVLLSICSLLTDCN 161
Query: 125 PNGAL-GSLDYKKEERRA 141
P L GS+ + RA
Sbjct: 162 PADPLVGSIATQYMTNRA 179
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
+ P+ +R++++ K++Q +P P E+NI W+ I GP +T FE G + ++
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 68 AEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-- 121
EYP KPP+ ++ PN ICL I + W P++ V L ++ + +
Sbjct: 61 EEYPNKPPTVKFISKMFHPN--VYADGSICLDILQN---RWSPTYDVAAILTSIQSLLDE 115
Query: 122 --PTNPNGALGSLDYKKEER 139
P +P +L + Y++ R
Sbjct: 116 PNPNSPANSLAAQLYQENRR 135
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
++ P+ +R++++ K++Q +P P E+NI W+ I GP +T FE G + ++
Sbjct: 3 HMTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEF 62
Query: 67 PAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM- 121
EYP KPP+ ++ PN ICL I + W P++ V L ++ + +
Sbjct: 63 TEEYPNKPPTVKFISKMFHPN--VYADGSICLDILQN---RWSPTYDVAAILTSIQSLLD 117
Query: 122 ---PTNPNGALGSLDYKKEER 139
P +P +L + Y++ R
Sbjct: 118 EPNPNSPANSLAAQLYQENRR 138
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
+ KRI +E+ E+ +P + + P +NI+EW+ I GP + +EGG++ I +YP
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 72 FKPP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP-TNPNGA 128
FKPP +F + +Q ICL I ++W P+ ++ L+++ + + NP
Sbjct: 64 FKPPKVTFRTRIYHCNINSQGVICLDILK---DNWSPALTISKVLLSICSLLTDCNPADP 120
Query: 129 L-GSLDYKKEERRA 141
L GS+ + RA
Sbjct: 121 LVGSIATQYMTNRA 134
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 2 ALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72 FKPP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP +F + + I L I W P+ ++ L+++ + + +PN
Sbjct: 62 FKPPKVAFTTRIYHPAINSNGSISLDILR---SQWSPALTISKVLLSICSLL-CDPN 114
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 19/183 (10%)
Query: 3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
E+ Y + + R+ +E+K++++ + + + N FEW I+GP T +EGG +
Sbjct: 15 ENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTL 74
Query: 63 RIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALI 118
I +P +YP+ PP +T PN +T ICL + + W P+ ++RTAL+++
Sbjct: 75 AITIPNDYPYNPPKIKFVTKIWHPNISSQTGA-ICLDVLKN---EWSPALTIRTALLSIQ 130
Query: 119 AFM----PTNPNGALGSLDYKKEERRALAIKSREAAPK-FGT-PE---RQKLIDEIHEYM 169
A + P +P A + YK E AL +K+ K F T P+ R+ +I +I E
Sbjct: 131 ALLSDPQPDDPQDAEVAKMYK--ENHALFVKTASVWTKTFATGPKEEPREVIIKKITEMG 188
Query: 170 LSK 172
S+
Sbjct: 189 FSE 191
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 21/139 (15%)
Query: 18 QEVKEMQSNPSDDFMSLPLEEN-IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS 76
+++ E+ NP + F + +++N ++ W+ I GP DT +EGG++ + P +YP +PP
Sbjct: 24 RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPK 83
Query: 77 FMLLT----PNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM 121
+T PN + +C+SI H P E W P +V T ++++I+ +
Sbjct: 84 MKFITEIWHPN--VDKNGDVCISIL-HEPGEDKYGYEKPEERWLPIHTVETIMISVISML 140
Query: 122 PTNPNG-ALGSLDYKKEER 139
+PNG + ++D KE R
Sbjct: 141 -ADPNGDSPANVDAAKEWR 158
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + I L I W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPN--INSNGSISLDILR---SQWSPALTISKVLLSICSLL-CDPN 116
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
++ KR+ QE++ + + + P +N+F+W + GP DT +E Y ++ P+
Sbjct: 7 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66
Query: 69 EYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
+YP+KPP TP + + ICL I E+W S+ VRT L++L + + PN
Sbjct: 67 DYPYKPPVVKFTTPCWHPNVDQSGNICLDILK---ENWTASYDVRTILLSLQSLL-GEPN 122
Query: 127 GA 128
A
Sbjct: 123 NA 124
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 72 FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
FKPP T PN + I L I W P+ + L+++ + + +PN
Sbjct: 61 FKPPKVAFTTRIYHPN--INSNGSISLDILR---SQWSPALKISKVLLSICSLL-CDPN 113
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
+ PA +R++++ K +Q +P P E NI +W I GP T FE G + I+
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 68 AEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-- 121
EYP KPP+ L+ PN ICL I + W P++ V + L ++ + +
Sbjct: 61 EEYPNKPPTVRFLSKMFHPN--VYADGSICLDILQN---RWSPTYDVSSILTSIQSLLDE 115
Query: 122 -----PTNPNGALGSLDYKKE-ERRALAI 144
P N A + K+E E+R AI
Sbjct: 116 PNPNSPANSQAAQLYQENKREYEKRVSAI 144
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
+ PA KR++++ K +Q +P P + NI W I GP DT ++GG + +Q
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 68 AEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-- 121
+YP KPP+ ++ PN ICL I + W P + V L ++ + +
Sbjct: 61 EDYPNKPPTVRFVSRMFHPN--IYADGSICLDILQN---QWSPIYDVAAILTSIQSLLCD 115
Query: 122 --PTNPNGALGSLDYKKEER 139
P +P + + Y + +R
Sbjct: 116 PNPNSPANSEAARMYSESKR 135
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 14/143 (9%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI++E +++ S+P + P ++N+ +Q I GP + +E GI+ + LP +YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74 PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
P LT PN + +I L + +W P+ +RT L+++ A + + NPN
Sbjct: 66 APKVRFLTKIYHPN--IDRLGRISLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 129 LG---SLDYKKEERRALAIKSRE 148
L + D+ K E+ A A K+RE
Sbjct: 121 LANDVAEDWIKNEQGAKA-KARE 142
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI++E +++ S+P + P ++N+ +Q I GP + +E GI+ + LP +YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74 PPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 130
P LT + + +I L + +W P+ +RT L+++ A + + NPN L
Sbjct: 66 APKVRFLTKIYHPAIDRLGRISLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLA 122
Query: 131 ---SLDYKKEERRALAIKSRE 148
+ D+ K E+ A A K+RE
Sbjct: 123 NDVAEDWIKNEQGAKA-KARE 142
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 21/150 (14%)
Query: 18 QEVKEMQSNPSDDFMSLPLEEN-IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS 76
+++ +M+ P D F + +++N I++W+ + GP DT +EGG + + P +YP KPP
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 77 FMLLT----PNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM 121
++ PN + + +C+SI H P E W P +V T L+++I+ M
Sbjct: 70 MKFISEIWHPN--IDKEGNVCISIL-HDPGDDKWGYERPEERWLPVHTVETILLSVIS-M 125
Query: 122 PTNPN-GALGSLDYKKEERRALAIKSREAA 150
T+PN + ++D K +R A ++ A
Sbjct: 126 LTDPNFESPANVDAAKMQRENYAEFKKKVA 155
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
+ PA +R++++ K M+ + + PL +N+ W I GP DT +E G + ++
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 68 AEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 123
EYP KPP L+ PN +ICL I + W P++ V + L ++ +
Sbjct: 61 EEYPNKPPHVKFLSEMFHPN--VYANGEICLDILQN---RWTPTYDVASILTSIQSLF-N 114
Query: 124 NPNGA 128
+PN A
Sbjct: 115 DPNPA 119
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 74 PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
P +T PN + +ICL I + W P+ +RT L+++ A + NP+
Sbjct: 71 APKVRFMTKIYHPN--VDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDP 125
Query: 129 LGS 131
L +
Sbjct: 126 LAN 128
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 74 PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
P +T PN + +ICL I + W P+ +RT L+++ A + NP+
Sbjct: 68 APKVRFMTKIYHPN--VDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDP 122
Query: 129 LGS 131
L +
Sbjct: 123 LAN 125
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 74 PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
P +T PN + +ICL I + W P+ +RT L+++ A + NP+
Sbjct: 66 APKVRFMTKIYHPN--VDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDP 120
Query: 129 LGS 131
L +
Sbjct: 121 LAN 123
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 74 PPS--FMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 130
P FM + + +ICL I + W P+ +RT L+++ A + NP+ L
Sbjct: 64 APKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLA 120
Query: 131 S 131
+
Sbjct: 121 N 121
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 74 PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
P +T PN + +ICL I + W P+ +RT L+++ A + NP+
Sbjct: 69 APKVRFMTKIYHPN--VDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDP 123
Query: 129 LGS 131
L +
Sbjct: 124 LAN 126
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A +R+++E++E++ +F ++ ++E N+ WQ I P + ++ G + I PAEY
Sbjct: 5 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 63
Query: 71 PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM----P 122
PFKPP T PN + + ++CL + + E+W+P+ + +LIA + P
Sbjct: 64 PFKPPKITFKTKIYHPN--IDEKGQVCLPVISA--ENWKPATKTDQVIQSLIALVNDPQP 119
Query: 123 TNPNGALGSLDYKKEERRALAIKSREAAPKFG 154
+P A + +Y K +R+ + E K+G
Sbjct: 120 EHPLRADLAEEYSK-DRKKFCKNAEEFTKKYG 150
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A +R+++E++E++ +F ++ ++E N+ WQ I P + ++ G + I PAEY
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61
Query: 71 PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM----P 122
PFKPP T PN + + ++CL + + E+W+P+ + +LIA + P
Sbjct: 62 PFKPPKITFKTKIYHPN--IDEKGQVCLPVISA--ENWKPATKTDQVIQSLIALVNDPQP 117
Query: 123 TNPNGALGSLDYKKEERRALAIKSREAAPKFG 154
+P A + +Y K +R+ + E K+G
Sbjct: 118 EHPLRADLAEEYSK-DRKKFCKNAEEFTKKYG 148
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 20/136 (14%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A KR+L+E++++ + ++ P E NIF W I+GP DT + G+++ +++ P +Y
Sbjct: 5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 71 PFKPPSFM----LLTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALV 115
P PP +L PN ++C+SI H P E W P SV L+
Sbjct: 65 PLSPPKLTFTPSILHPN--IYPNGEVCISIL-HSPGDDPNMYELAEERWSPVQSVEKILL 121
Query: 116 ALIAFMPTNPNGALGS 131
++++ + + PN G+
Sbjct: 122 SVMSML-SEPNIESGA 136
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 15/142 (10%)
Query: 6 YNLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHG 62
+++ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y
Sbjct: 52 FDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 111
Query: 63 RIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALI 118
I++P YPF PP +T PN T ICL I + W + ++RT L++L
Sbjct: 112 EIKIPETYPFNPPKVRFITKIWHPNISSVTGA-ICLDILK---DQWAAAMTLRTVLLSLQ 167
Query: 119 AFM----PTNPNGALGSLDYKK 136
A + P +P A+ + YK+
Sbjct: 168 ALLAAAEPDDPQDAVVANQYKQ 189
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
+ P KR+ QE+ + + + P +N+F+W I G T +E Y ++ P+
Sbjct: 28 RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 87
Query: 69 EYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
YP+ P+ LTP + +TQ I L I E W + VRT L+++ + +
Sbjct: 88 GYPYNAPTVKFLTPCYHPNVDTQGNISLDILK---EKWSALYDVRTILLSIQSLL 139
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
Query: 39 NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICL 94
+I W+ I GP T +EGG + I +P +YP+ PP +T PN +T ICL
Sbjct: 73 DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGA-ICL 131
Query: 95 SISNHHPEHWQPSWSVRTALVALIAFM----PTNPNGA 128
I H W P+ ++RTAL+++ A + PT+P A
Sbjct: 132 DILKH---EWSPALTIRTALLSIQAMLADPVPTDPQDA 166
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 14 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
KRI++E++ ++ +P+ + E +I + GP T +EGG + I++P EYPF
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 73 KPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM----PTN 124
KPP T PN T ICL I + W P ++++AL++L A + P +
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGA-ICLDILKN---AWSPVITLKSALISLQALLQSPEPND 119
Query: 125 PNGALGSLDYKKE 137
P A + Y ++
Sbjct: 120 PQDAEVAQHYLRD 132
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 14 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
KRI++E++ ++ +P+ + E +I + GP T +EGG + I++P EYPF
Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 73 KPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM----PTN 124
KPP T PN T ICL I + W P ++++AL++L A + P +
Sbjct: 65 KPPKMQFDTKVYHPNISSVTGA-ICLDILRN---AWSPVITLKSALISLQALLQSPEPND 120
Query: 125 PNGA 128
P A
Sbjct: 121 PQDA 124
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 5 RYNLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYH 61
R ++ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y
Sbjct: 15 RGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 74
Query: 62 GRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
I++P YPF PP +T PN T ICL I + W + ++RT L++L
Sbjct: 75 LEIKIPETYPFNPPKVRFITKIWHPNISSVTGA-ICLDILK---DQWAAAMTLRTVLLSL 130
Query: 118 IAFM----PTNPNGALGSLDYKK 136
A + P +P A+ + YK+
Sbjct: 131 QALLAAAEPDDPQDAVVANQYKQ 153
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 15/141 (10%)
Query: 7 NLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGR 63
++ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y
Sbjct: 2 SMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 61
Query: 64 IQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIA 119
I++P YPF PP +T PN T ICL I + W + ++RT L++L A
Sbjct: 62 IKIPETYPFNPPKVRFITKIWHPNISSVTGA-ICLDILK---DQWAAAMTLRTVLLSLQA 117
Query: 120 FM----PTNPNGALGSLDYKK 136
+ P +P A+ + YK+
Sbjct: 118 LLAAAEPDDPQDAVVANQYKQ 138
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 15/140 (10%)
Query: 8 LKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
+ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y I
Sbjct: 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 64
Query: 65 QLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
++P YPF PP +T PN T ICL I + W + ++RT L++L A
Sbjct: 65 KIPETYPFNPPKVRFITKIWHPNISSVTGA-ICLDILK---DQWAAAMTLRTVLLSLQAL 120
Query: 121 M----PTNPNGALGSLDYKK 136
+ P +P A+ + YK+
Sbjct: 121 LAAAEPDDPQDAVVANQYKQ 140
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 15/140 (10%)
Query: 8 LKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
+ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y I
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 65 QLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
++P YPF PP +T PN T ICL I + W + ++RT L++L A
Sbjct: 62 KIPETYPFNPPKVRFITKIWHPNISSVTGA-ICLDILK---DQWAAAMTLRTVLLSLQAL 117
Query: 121 M----PTNPNGALGSLDYKK 136
+ P +P A+ + YK+
Sbjct: 118 LAAAEPDDPQDAVVANQYKQ 137
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
M + NL ++ + +EV + ++P D P EE++ + Q I GP T + GG++
Sbjct: 3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF 62
Query: 61 HGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVA 116
++ L ++P PP LT PN +IC+++ W +R L+
Sbjct: 63 RMKLLLGKDFPASPPKGYFLTKIFHPN--VGANGEICVNVLK---RDWTAELGIRHVLLT 117
Query: 117 LIAFMPT-NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIH 166
+ + NP AL +E R L E A R +L+ EIH
Sbjct: 118 IKCLLIHPNPESAL-----NEEAGRLLLENYEEYA------ARARLLTEIH 157
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 8 LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
+ + + RI++E K +++ SDD ++ P E ++ +W+ I GP DT +
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56 EGGIYHGRIQLPAEYPFKPP--SFM---LLTPNGRFETQTKICLSISNHHPEHWQPSWSV 110
E + I++P+ YP PP SFM +L N + T +ICL+I PE W P W +
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSAT-GEICLNILK--PEEWTPVWDL 119
Query: 111 RTALVAL 117
+ A+
Sbjct: 120 LHCVHAV 126
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 8 LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
+ + + RI++E K +++ SDD ++ P E ++ +W+ I GP DT +
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56 EGGIYHGRIQLPAEYPFKPP--SFM---LLTPNGRFETQTKICLSISNHHPEHWQPSWSV 110
E + I++P+ YP PP SFM +L N + T +ICL+I PE W P W +
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT-GEICLNILK--PEEWTPVWDL 119
Query: 111 RTALVAL 117
+ A+
Sbjct: 120 LHCVHAV 126
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 8 LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
+ + + RI++E K +++ SDD ++ P E ++ +W+ I GP DT +
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56 EGGIYHGRIQLPAEYPFKPP--SFM---LLTPNGRFETQTKICLSISNHHPEHWQPSWSV 110
E + I++P+ YP PP SFM +L N + T +ICL+I PE W P W +
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT-GEICLNILK--PEEWTPVWDL 119
Query: 111 RTALVAL 117
+ A+
Sbjct: 120 LHCVHAV 126
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 15 RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP 74
R+ +E+ + + P ++ + + + I G +T +E G++ + +P YPF+P
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 75 PSFMLLTP--NGRFETQTKICLSISNHHPE-HWQPSWSVRTALVALIAFMPT-NPNGAL 129
P LTP + ++ +ICL + P+ W+PS ++ T L ++ M NP+ L
Sbjct: 68 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 126
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 42 EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS--FM--LLTPNGRFETQTKICLSIS 97
++ GP T +EGGI+ + LP +YPF PS FM LL PN E +CL +
Sbjct: 30 DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVD-EASGSVCLDVI 88
Query: 98 NHHPEHWQPSWSVRTALVALIAFMPTNPN 126
N + W P +S+ + + T PN
Sbjct: 89 N---QTWTPLYSLVNVFEVFLPQLLTYPN 114
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 15 RILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
R+ +E K+ + + F + P + ++ W+ I G T +EGG+Y + P E
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 70 YPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNG 127
YP +PP P + +CLSI N E W+P+ +++ L+ + + +PN
Sbjct: 74 YPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEE-EGWKPAITIKQILLGIQDLL-DDPNI 131
Query: 128 A---------LGSLDYKKEERRALAIKSREAAP 151
A + D + E+R A ++RE AP
Sbjct: 132 ASPAQTEAYTMFKKDKVEYEKRVRA-QARENAP 163
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYH 61
N+ A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++
Sbjct: 2 NMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 62 GRIQLPAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
R+ +YP PP L PN +CLSI + W+P+ +++ L+ +
Sbjct: 62 LRMLFKDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 118
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
++R+ +E K+ + + F + P+++ ++ +W+ I G T + GG+Y ++
Sbjct: 7 CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEY 66
Query: 67 PAEYPFKPPSFMLLTPNGRFETQT----KICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
P EYP KPP P G + ICLSI N + W+P+ +++ ++ + +
Sbjct: 67 PNEYPSKPPKVKF--PAGFYHPNVYPSGTICLSILNED-QDWRPAITLKQIVLGVQDLLD 123
Query: 123 T-NPN 126
+ NPN
Sbjct: 124 SPNPN 128
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
++R+ +E K+ + + F + P+++ ++ +W+ I G T + GG+Y ++
Sbjct: 5 CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEY 64
Query: 67 PAEYPFKPPSFMLLTPNGRFETQT----KICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
P EYP KPP P G + ICLSI N + W+P+ +++ ++ + +
Sbjct: 65 PNEYPSKPPKVKF--PAGFYHPNVYPSGTICLSILNED-QDWRPAITLKQIVLGVQDLLD 121
Query: 123 T-NPN 126
+ NPN
Sbjct: 122 SPNPN 126
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 10 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 69
Query: 67 PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
+YP PP L PN +CLSI + W+P+ +++ L+ +
Sbjct: 70 KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 121
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
+YP PP L PN +CLSI + W+P+ +++ L+ +
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPN--VAPSGTVCLSILEED-KDWRPAITIKQILLGI 119
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 7 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 66
Query: 67 PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
+YP PP L PN +CLSI + W+P+ +++ L+ +
Sbjct: 67 KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 118
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 6 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 65
Query: 67 PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
+YP PP L PN +CLSI + W+P+ +++ L+ +
Sbjct: 66 KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 117
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 7 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 66
Query: 64 IQLPAEYPFKPPSFMLLTP---NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
++ +YP PPS +T NG + + + S WQ S+S++ L L
Sbjct: 67 VECGPKYPEAPPSVRFVTKINMNG-INNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRL 125
Query: 121 MPTNPNGAL 129
M + N L
Sbjct: 126 MMSKENMKL 134
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 12 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 71
Query: 64 IQLPAEYPFKPPSFMLLTP---NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
++ +YP PPS +T NG + + + S WQ S+S++ L L
Sbjct: 72 VECGPKYPEAPPSVRFVTKINMNG-INNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRL 130
Query: 121 MPTNPNGAL 129
M + N L
Sbjct: 131 MMSKENMKL 139
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67 PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
+YP PP L PN +CLSI + W+P+ +++ L+ +
Sbjct: 65 KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 116
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
+YP PP L PN +CLSI + W+P+ +++ L+ +
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 119
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
+YP PP L PN +CLSI + W+P+ +++ L+ +
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 119
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 2 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 61
Query: 64 IQLPAEYPFKPPSFMLLTP---NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
++ +YP PPS +T NG + + + S WQ S+S++ L L
Sbjct: 62 VECGPKYPEAPPSVRFVTKINMNG-INNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRL 120
Query: 121 MPTNPNGAL 129
M + N L
Sbjct: 121 MMSKENMKL 129
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
+YP PP L PN +CLSI + W+P+ +++ L+ +
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 119
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYPFKPPSFMLLTPNGRFETQT----KICLSISNHHPEHWQPSWSVRTALVAL 117
+YP PP P F Q +CLSI + W+P+ +++ L+ +
Sbjct: 68 KDDYPSSPPKCKFEPP--LFHPQVYPSGTVCLSILEED-KDWRPAITIKQILLGI 119
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 1 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 60
Query: 64 IQLPAEYPFKPPSFMLLTP---NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
++ +YP PPS +T NG + + + S WQ S+S++ L L
Sbjct: 61 VECGPKYPEAPPSVRFVTKINMNG-INNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRL 119
Query: 121 MPTNPNGAL 129
M + N L
Sbjct: 120 MMSKENMKL 128
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A R+++E++++Q P +L ++ N+ W A+ P + ++ RI P EY
Sbjct: 2 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 60
Query: 71 PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
PFKPP T PN + +ICL I + E+W+P L AL
Sbjct: 61 PFKPPMIKFTTKIYHPN--VDENGQICLPIISS--ENWKPCTKTCQVLEAL 107
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A R+++E++++Q P +L ++ N+ W A+ P + ++ RI P EY
Sbjct: 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 63
Query: 71 PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
PFKPP T PN + +ICL I + E+W+P L AL
Sbjct: 64 PFKPPMIKFTTKIYHPN--VDENGQICLPIISS--ENWKPCTKTCQVLEAL 110
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 42 EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS--FM--LLTPNGRFETQTKICLSIS 97
E+ GP T +EGG++ R+ LP +YPFK PS FM + PN E +CL +
Sbjct: 52 EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID-EASGTVCLDVI 110
Query: 98 NHHPEHWQPSWSV----RTALVALIAF-MPTNP-NGALGSLDYKKEERRALAIKSREAAP 151
N + W + + + L L+A+ P +P NG ++ + E IK E
Sbjct: 111 N---QTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIK--EYIQ 165
Query: 152 KFGTPERQK 160
K+ T E K
Sbjct: 166 KYATEEALK 174
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 38 ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSF----MLLTPNGRFETQTKIC 93
+ + E+ +GP T +E G + +QLP++YPFK PS +L PN E +C
Sbjct: 35 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVD-ERSGSVC 93
Query: 94 LSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
L + N + W P + + + + PN
Sbjct: 94 LDVIN---QTWTPMYQLENIFDVFLPQLLRYPN 123
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
+ +YNL N A RI +E+ NP + NI W G +T + +Y
Sbjct: 13 KTKYNLGN-ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKI 71
Query: 63 RIQLPAEYPFKPPSFMLLT---PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIA 119
+I P YP KPP L + + ICLS+ + + PS S+ ++++I+
Sbjct: 72 KIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG---DDYNPSLSISGLILSIIS 128
Query: 120 FM 121
+
Sbjct: 129 ML 130
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
+YN+ N A RI +E+ +NP + NI W G +T + +Y +I
Sbjct: 1 KYNMGN-ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59
Query: 65 QLPAEYPFKPPSFMLLT---PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
P +YP KPP L + + ICLS+ + + PS S+ ++++I+ +
Sbjct: 60 IFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISML 116
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 18 QEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSF 77
++ +++ N + P+ E++ EW+ I G ++ ++G ++ I +EY + PP
Sbjct: 30 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV 89
Query: 78 MLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 125
+T PN T + C+ + +PE W ++++ + L+AL M +NP
Sbjct: 90 KFITIPFHPNVDPHT-GQPCIDFLD-NPEKWNTNYTLSSILLAL-QVMLSNP 138
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 32 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91
Query: 64 IQLPAEYPFKPPSFMLLT---------PNGRFETQTKICLSISNHHPEHWQPSWSVRTAL 114
I+ +YP PP +T NG + + L+ WQ S+S++ L
Sbjct: 92 IECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-------KWQNSYSIKVVL 144
Query: 115 VALIAFMPTNPNGAL 129
L M + N L
Sbjct: 145 QELRRLMMSKENMKL 159
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 4 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLK 63
Query: 64 IQLPAEYPFKPPSFMLLT---------PNGRFETQTKICLSISNHHPEHWQPSWSVRTAL 114
I+ +YP PP +T NG + + L+ WQ S+S++ L
Sbjct: 64 IECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-------KWQNSYSIKVVL 116
Query: 115 VALIAFMPTNPNGAL 129
L M + N L
Sbjct: 117 QELRRLMMSKENMKL 131
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 14 KRILQEVKEMQSNPSDDFMSL---PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
KR+ +E+ +Q++P M+L ++ +I +W + G T +EG + + + Y
Sbjct: 25 KRLQKELLALQNDPPPG-MTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRY 83
Query: 71 PFKPPSFMLLTPNG----RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
PF P M N + ICLSI E W P+ SV++ +++I+ +
Sbjct: 84 PFDSPQVMFTGENIPVHPHVYSNGHICLSILT---EDWSPALSVQSVCLSIISML 135
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 81
Query: 64 IQLPAEYPFKPPSFMLLT---------PNGRFETQTKICLSISNHHPEHWQPSWSVRTAL 114
I+ +YP PP +T NG + + L+ WQ S+S++ L
Sbjct: 82 IECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-------KWQNSYSIKVVL 134
Query: 115 VALIAFMPTNPNGAL 129
L M + N L
Sbjct: 135 QELRRLMMSKENMKL 149
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67 PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
+YP PP L PN + LSI + W+P+ +++ L+ +
Sbjct: 65 KDDYPSSPPKCKFEPPLFHPN--VYPSGTVSLSILEED-KDWRPAITIKQILLGI 116
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67 PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
+YP PP L PN + LSI + W+P+ +++ L+ +
Sbjct: 65 KDDYPSSPPKCKFEPPLFHPN--VYPSGTVXLSILEED-KDWRPAITIKQILLGI 116
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 37 EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG---RFE----TQ 89
EE + + I GP DT + G + + P +YP PP L T G RF
Sbjct: 106 EERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYND 165
Query: 90 TKICLSISN----HHPEHWQPSWS 109
K+CLSI N E W P S
Sbjct: 166 GKVCLSILNTWHGRPEEKWNPQTS 189
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 19/131 (14%)
Query: 11 PAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
P R+L E++ Q + +S LE + W I G T FE IY I
Sbjct: 25 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFC 84
Query: 67 PAEYPFKPPSFMLLTPNGRFETQTKI-CLS-----ISN--HHPEHWQPSWSVRTALVALI 118
YP PP+ +F+T+ ++ C+ I N H ++W ++++ T L++L
Sbjct: 85 DDNYPDSPPTV-------KFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLR 137
Query: 119 AFMPTNPNGAL 129
M ++ N L
Sbjct: 138 QEMLSSANKRL 148
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 19/131 (14%)
Query: 11 PAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
P R+L E++ Q + +S LE + W I G T FE IY I
Sbjct: 21 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFC 80
Query: 67 PAEYPFKPPSFMLLTPNGRFETQTKI-CLS-----ISN--HHPEHWQPSWSVRTALVALI 118
YP PP+ +F+T+ ++ C+ I N H ++W ++++ T L++L
Sbjct: 81 DDNYPDSPPTV-------KFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLR 133
Query: 119 AFMPTNPNGAL 129
M ++ N L
Sbjct: 134 QEMLSSANKRL 144
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 7 NLKNPAVKRILQEVK----EMQSNPSDDFMSLPLE--------ENIFEWQFAIRGPGDTE 54
++KN + KRI++++K E+ +N + P + I+ W ++ P D+
Sbjct: 4 SMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSV 63
Query: 55 F--EGGIYHGRIQLPAEYPFKPPSFMLLTP 82
+ G Y + +YP +PP+ +TP
Sbjct: 64 YGGAGNTYQLSVLFSDDYPHEPPTVRFVTP 93
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 14 KRILQEVKEMQSN-PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
K +++EV E+++N P + P + +Q + P + ++GG + ++P Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNM 75
Query: 73 KPPSFMLLT----PNGRFETQT-KICLSISNHHP---EHWQPS-------WSVRTALVAL 117
PP LT PN T+T +ICLS+ H W P+ W + + L
Sbjct: 76 VPPKVKCLTKIWHPNI---TETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDL 132
Query: 118 IAF-MPTNPNGALGSLDYKKEERRAL 142
+ F P N A L K++ R +
Sbjct: 133 LNFDDPLNIEAAEHHLRDKEDFRNKV 158
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 19/145 (13%)
Query: 14 KRILQEVKEMQSN-PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
K +++EV E+++N P + P + +Q + P + ++GG + ++P Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNM 75
Query: 73 KPPSFMLLT----PNGRFETQTKICLSISNHHP---EHWQPS-------WSVRTALVALI 118
PP LT PN +ICLS+ H W P+ W + + L+
Sbjct: 76 VPPKVKCLTKIWHPN--ITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL 133
Query: 119 AF-MPTNPNGALGSLDYKKEERRAL 142
F P N A L K++ R +
Sbjct: 134 NFDDPLNIEAAEHHLRDKEDFRNKV 158
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 78 MLLTPNGRFETQTK-----ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSL 132
+ + NG F T I S++N+ SW+ TA VA +++ P N A GSL
Sbjct: 497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 556
Query: 133 D 133
D
Sbjct: 557 D 557
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 23/135 (17%)
Query: 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGRI 64
K P R+L+E+++ + + S L ++ + +W I GP + E IY I
Sbjct: 3 KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI 62
Query: 65 QLPAEYPFKPPSFMLLTPNGRFETQTKICLSISN----------HHPEHWQPSWSVRTAL 114
YP PP + +KI L N H W+ ++++ T L
Sbjct: 63 DCGPNYPDSPPKVTFI---------SKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLL 113
Query: 115 VALIAFMPTNPNGAL 129
+ L M T N L
Sbjct: 114 LDLRKEMATPANKKL 128
>pdb|2DMF|A Chain A, An Extended Conformation Of The Rwd Domain Of Human Ring
Finger Protein 25
Length = 137
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 64 IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNH 99
+Q+PAEYP + P + P G + Q L + H
Sbjct: 65 LQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGH 100
>pdb|2DAY|A Chain A, Solution Structure Of The Rwd Domain Of Human Ring Finger
Protein 25
Length = 128
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 64 IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNH 99
+Q+PAEYP + P + P G + Q L + H
Sbjct: 65 LQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGH 100
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 23/135 (17%)
Query: 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGRI 64
K P R+L+E+++ + + S L ++ + +W I GP + E IY I
Sbjct: 4 KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI 63
Query: 65 QLPAEYPFKPPSFMLLTPNGRFETQTKICLSISN----------HHPEHWQPSWSVRTAL 114
YP PP + +KI L N H W+ ++++ T L
Sbjct: 64 DCGPNYPDSPPKVTFI---------SKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLL 114
Query: 115 VALIAFMPTNPNGAL 129
+ L M T N L
Sbjct: 115 LDLRKEMATPANKKL 129
>pdb|1R8N|A Chain A, The Crystal Structure Of The Kunitz (Sti) Type Inhibitor
From Seeds Of Delonix Regia
Length = 185
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 32 MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS-----FMLLTPNGRF 86
MS+ E++ + +R E +G IY +L E+ KP ++++ +G
Sbjct: 46 MSIIQEQSDLQMGLPVRFSSPEEKQGKIYT-DTELEIEFVEKPDCAESSKWVIVKDSG-- 102
Query: 87 ETQTKICLSISNHHP--EHWQPSWSVRT--ALVALIAFMPTNPNGALGSLDYKKEERRAL 142
+ ++ + S HP E + + + +L + F P + +G+ + E RR+L
Sbjct: 103 --EARVAIGGSEDHPQGELVRGFFKIEKLGSLAYKLVFCPKSDSGSCSDIGINYEGRRSL 160
Query: 143 AIKSREAAP 151
+KS + P
Sbjct: 161 VLKSSDDVP 169
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 133 DYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAP--PVPQLSTCEEQPGN-- 188
D ++++RAL + + +FG+ Q++I+ + +L P PV + +Q GN
Sbjct: 280 DXSEKQKRALXVIKEKVLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVL 339
Query: 189 ------REGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSR 240
++G + T G+G + R V ED N + +R
Sbjct: 340 PHVFLXKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSVTR 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,003,392
Number of Sequences: 62578
Number of extensions: 431335
Number of successful extensions: 886
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 124
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)