Query 022163
Match_columns 301
No_of_seqs 205 out of 1608
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:30:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0428 Non-canonical ubiquiti 100.0 1.4E-52 3E-57 376.9 17.6 296 1-300 1-312 (314)
2 KOG0417 Ubiquitin-protein liga 100.0 1.2E-42 2.6E-47 293.4 14.1 141 12-155 2-147 (148)
3 COG5078 Ubiquitin-protein liga 100.0 8.5E-42 1.8E-46 293.0 15.9 144 9-155 3-152 (153)
4 PTZ00390 ubiquitin-conjugating 100.0 1.3E-38 2.9E-43 274.0 17.4 142 12-156 3-149 (152)
5 PLN00172 ubiquitin conjugating 100.0 4.7E-38 1E-42 269.2 17.5 141 12-155 2-147 (147)
6 KOG0419 Ubiquitin-protein liga 100.0 1.7E-38 3.6E-43 262.3 13.5 142 8-152 1-147 (152)
7 KOG0894 Ubiquitin-protein liga 100.0 2.4E-34 5.2E-39 254.9 16.3 156 9-167 3-158 (244)
8 KOG0424 Ubiquitin-protein liga 100.0 5.3E-34 1.2E-38 238.7 14.8 147 8-155 1-157 (158)
9 KOG0418 Ubiquitin-protein liga 100.0 9.7E-34 2.1E-38 246.6 15.0 160 8-171 1-175 (200)
10 KOG0426 Ubiquitin-protein liga 100.0 2.2E-33 4.9E-38 232.0 14.5 144 8-152 1-161 (165)
11 KOG0425 Ubiquitin-protein liga 100.0 8.5E-33 1.8E-37 234.4 15.2 141 11-152 5-162 (171)
12 PF00179 UQ_con: Ubiquitin-con 100.0 3.9E-33 8.5E-38 235.5 12.2 134 15-150 1-140 (140)
13 cd00195 UBCc Ubiquitin-conjuga 100.0 2.8E-32 6E-37 230.7 14.9 135 14-150 2-141 (141)
14 KOG0421 Ubiquitin-protein liga 100.0 1.3E-32 2.9E-37 230.3 11.4 138 9-150 27-169 (175)
15 smart00212 UBCc Ubiquitin-conj 100.0 1.6E-31 3.5E-36 227.0 16.4 139 14-154 1-145 (145)
16 KOG0422 Ubiquitin-protein liga 100.0 7.9E-29 1.7E-33 206.7 12.5 142 12-156 3-150 (153)
17 KOG0423 Ubiquitin-protein liga 99.9 1E-27 2.3E-32 206.4 10.9 150 1-167 1-155 (223)
18 KOG0416 Ubiquitin-protein liga 99.9 9E-28 1.9E-32 206.3 10.2 141 12-158 4-151 (189)
19 KOG0427 Ubiquitin conjugating 99.9 1.7E-25 3.6E-30 185.1 11.0 115 5-123 9-126 (161)
20 KOG0420 Ubiquitin-protein liga 99.9 2.1E-25 4.5E-30 192.1 10.7 141 8-154 25-174 (184)
21 KOG0895 Ubiquitin-conjugating 99.6 8.5E-16 1.8E-20 161.4 8.1 114 13-126 853-975 (1101)
22 KOG0429 Ubiquitin-conjugating 99.6 1.4E-14 3.1E-19 129.6 13.0 136 14-154 22-169 (258)
23 KOG0895 Ubiquitin-conjugating 99.5 1.7E-14 3.8E-19 151.7 10.7 116 11-126 282-408 (1101)
24 KOG0896 Ubiquitin-conjugating 99.1 4.8E-10 1E-14 93.8 7.7 106 12-121 6-121 (138)
25 KOG0897 Predicted ubiquitin-co 98.1 1.8E-06 4E-11 70.6 3.2 61 60-122 13-76 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.1 1.4E-05 3E-10 67.3 7.5 70 56-125 34-108 (133)
27 PF05743 UEV: UEV domain; Int 97.8 1.8E-05 3.9E-10 65.9 4.3 79 39-125 31-119 (121)
28 PF08694 UFC1: Ubiquitin-fold 97.3 0.00017 3.7E-09 61.4 2.6 98 10-114 23-135 (161)
29 KOG2391 Vacuolar sorting prote 97.1 0.0028 6.1E-08 61.0 9.1 110 8-125 17-139 (365)
30 KOG3357 Uncharacterized conser 96.5 0.0037 8.1E-08 52.6 4.5 79 11-95 27-118 (167)
31 PF05773 RWD: RWD domain; Int 94.9 0.091 2E-06 41.5 6.3 68 14-82 4-73 (113)
32 smart00591 RWD domain in RING 94.1 0.3 6.4E-06 38.3 7.6 25 57-81 40-64 (107)
33 PF14462 Prok-E2_E: Prokaryoti 94.0 0.57 1.2E-05 39.3 9.4 91 29-121 12-119 (122)
34 PF14457 Prok-E2_A: Prokaryoti 87.3 0.61 1.3E-05 40.8 3.4 63 57-121 49-124 (162)
35 PF09765 WD-3: WD-repeat regio 74.8 3.7 8.1E-05 39.2 4.0 87 11-121 99-186 (291)
36 KOG0309 Conserved WD40 repeat- 70.3 14 0.00031 39.7 7.3 69 12-82 421-491 (1081)
37 PF01307 Plant_vir_prot: Plant 64.1 6.4 0.00014 32.1 2.7 42 260-301 3-52 (104)
38 KOG4018 Uncharacterized conser 59.9 32 0.00068 31.6 6.6 66 15-82 6-73 (215)
39 PF03908 Sec20: Sec20; InterP 52.8 14 0.0003 28.9 2.7 24 263-286 67-90 (92)
40 PF04995 CcmD: Heme exporter p 52.7 16 0.00036 25.0 2.8 18 267-284 5-22 (46)
41 TIGR03141 cytochro_ccmD heme e 50.4 19 0.00041 24.7 2.8 18 267-284 6-23 (45)
42 PF06679 DUF1180: Protein of u 48.6 1.1E+02 0.0024 26.9 7.9 27 262-289 92-118 (163)
43 PF05763 DUF835: Protein of un 46.5 20 0.00043 30.4 2.9 24 277-300 60-83 (136)
44 COG4499 Predicted membrane pro 42.0 19 0.00042 35.9 2.4 21 264-284 216-236 (434)
45 COG4298 Uncharacterized protei 41.2 27 0.00059 27.6 2.7 17 266-282 17-33 (95)
46 cd00421 intradiol_dioxygenase 38.4 41 0.00089 28.5 3.7 25 57-81 65-90 (146)
47 cd03457 intradiol_dioxygenase_ 37.1 43 0.00092 30.0 3.7 25 57-81 86-110 (188)
48 COG3114 CcmD Heme exporter pro 37.0 38 0.00082 25.4 2.7 18 267-284 17-34 (67)
49 PF12669 P12: Virus attachment 36.9 30 0.00065 25.1 2.2 21 274-294 6-27 (58)
50 TIGR02848 spore_III_AC stage I 36.0 41 0.00088 25.2 2.8 21 265-285 4-24 (64)
51 PF13544 N_methyl_2: Type IV p 35.5 40 0.00087 21.3 2.4 26 258-283 6-31 (31)
52 PF06113 BRE: Brain and reprod 29.6 1E+02 0.0023 30.2 5.2 35 40-80 53-87 (333)
53 PF03366 YEATS: YEATS family; 28.5 1.3E+02 0.0028 23.3 4.7 43 41-85 2-44 (84)
54 PRK10381 LPS O-antigen length 28.3 92 0.002 30.8 4.8 44 248-291 320-366 (377)
55 PF07462 MSP1_C: Merozoite sur 27.7 1.2E+02 0.0027 31.6 5.6 14 109-122 218-231 (574)
56 cd03459 3,4-PCD Protocatechuat 27.0 81 0.0018 27.4 3.7 25 57-81 72-101 (158)
57 PF03021 CM2: Influenza C viru 26.9 39 0.00084 27.6 1.5 27 264-290 49-75 (139)
58 PF04863 EGF_alliinase: Alliin 24.8 32 0.0007 25.0 0.6 11 290-300 19-29 (56)
59 PF01618 MotA_ExbB: MotA/TolQ/ 24.5 99 0.0021 25.7 3.7 24 268-291 103-126 (139)
60 PF10215 Ost4: Oligosaccaryltr 24.4 1.1E+02 0.0024 20.2 3.0 25 265-289 4-29 (35)
61 PF13807 GNVR: G-rich domain o 24.4 70 0.0015 24.2 2.5 16 272-287 67-82 (82)
62 PF06686 SpoIIIAC: Stage III s 23.4 1E+02 0.0022 21.9 3.1 21 267-287 2-22 (58)
63 PHA01735 hypothetical protein 23.0 57 0.0012 24.9 1.7 17 285-301 39-55 (76)
64 COG4333 Uncharacterized protei 22.9 59 0.0013 28.2 2.0 17 283-299 60-76 (167)
65 PRK15471 chain length determin 22.9 96 0.0021 30.1 3.7 42 250-291 278-322 (325)
66 COG3765 WzzB Chain length dete 22.9 1.3E+02 0.0027 29.8 4.4 47 245-291 295-344 (347)
67 TIGR02797 exbB tonB-system ene 22.8 1E+02 0.0022 27.8 3.7 23 268-290 167-189 (211)
68 smart00340 HALZ homeobox assoc 22.7 73 0.0016 22.0 2.0 15 12-26 20-34 (44)
69 PF13950 Epimerase_Csub: UDP-g 22.3 42 0.00091 24.5 0.8 25 103-127 37-61 (62)
70 KOG3251 Golgi SNAP receptor co 22.1 80 0.0017 29.0 2.8 22 264-285 189-210 (213)
71 PF10617 DUF2474: Protein of u 21.5 2.1E+02 0.0046 19.4 4.0 26 269-294 14-39 (40)
72 PF12652 CotJB: CotJB protein; 21.4 2.7E+02 0.0059 21.4 5.2 40 114-154 15-54 (78)
73 PF07963 N_methyl: Prokaryotic 20.8 1E+02 0.0022 17.8 2.1 18 266-283 1-18 (20)
74 PF06474 MLTD_N: MltD lipid at 20.6 1.5E+02 0.0032 19.5 3.0 26 258-283 4-29 (34)
75 COG3190 FliO Flagellar biogene 20.6 1.2E+02 0.0027 26.0 3.4 31 264-294 22-55 (137)
76 PF05961 Chordopox_A13L: Chord 20.5 98 0.0021 23.4 2.5 16 270-285 5-20 (68)
77 PHA03049 IMV membrane protein; 20.4 1E+02 0.0022 23.3 2.5 16 270-285 5-20 (68)
78 PF05808 Podoplanin: Podoplani 20.3 34 0.00074 30.1 0.0 18 270-287 139-156 (162)
79 TIGR02423 protocat_alph protoc 20.1 1.2E+02 0.0027 27.2 3.6 24 57-80 96-124 (193)
No 1
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-52 Score=376.93 Aligned_cols=296 Identities=45% Similarity=0.687 Sum_probs=248.0
Q ss_pred CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEe
Q 022163 1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL 80 (301)
Q Consensus 1 ma~~~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~Fl 80 (301)
|++.+||..+++.|||+||.++|+ +|...+.+.|.++|+|+|+++|+||.||-||||+||.+|.||.|||++||.+..+
T Consensus 1 ~m~erYN~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLL 79 (314)
T KOG0428|consen 1 MMEERYNLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILL 79 (314)
T ss_pred CchhhhcccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEE
Confidence 788999999999999999999999 7888899999999999999999999999999999999999999999999999999
Q ss_pred cCCceecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCCCchhhhHhhHHhHHHHHHHHHHHHhh-hCChhHH
Q 022163 81 TPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPK-FGTPERQ 159 (301)
Q Consensus 81 TPn~nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~nP~~~l~A~~~~~edr~~f~~kare~~~k-ya~~~r~ 159 (301)
|||++|..+.+|||+|.++||+.|.|+|+|++.|++|+.+|.+.|++++++++|-.++|+..++++++|.+| |++..++
T Consensus 80 TpNGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~GAlGSlDYpp~ERr~LAkkS~e~~ck~cGs~mk~ 159 (314)
T KOG0428|consen 80 TPNGRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPEGALGSLDYPPEERRALAKKSQEFCCKGCGSAMKD 159 (314)
T ss_pred cCCCceeeCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCCCccccCcCCHHHHHHHHHhhcccCccccCChhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 8888888
Q ss_pred HHH----H-HHHHHHhcCCCCCCCCCC---CCCCCCCCccccccccCCcccccCCCCCCC---CCCCchhhhhhh-ccCC
Q 022163 160 KLI----D-EIHEYMLSKAPPVPQLST---CEEQPGNREGEAQASSIDAMVTGAGEGLPA---PVGDRIIEEVQE-DLPA 227 (301)
Q Consensus 160 ~l~----~-~~~~~~~~~~~~vP~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~ 227 (301)
.++ + +++++..++...++-.++ +.+...-++...+.++...+-....+|.++ ..++... +.++ ..++
T Consensus 160 ~llp~~~d~~~~Q~~eaK~la~q~~f~~E~~~~~k~vsea~~q~~p~et~~~~e~~s~~T~~~~~~~~~a-~~~e~~~~V 238 (314)
T KOG0428|consen 160 VLLPLKSDSDSSQAQEAKELARQISFKAEVNSSGKTVSEADLQHSPSETDLQDEIASASTSYGLQNSSAA-SFHEPTQPV 238 (314)
T ss_pred eeeeccCCchHHHHHHHHHHhhcCcchhhhccccchhhhhhccCCcccccchhhhhcccccccccchhhh-hhcCCCccc
Confidence 877 4 788887777777777666 344444566666766666655555555554 2222222 3332 3333
Q ss_pred CCCCCCCC---CCCcccccCCCCccccCCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCceeeccC
Q 022163 228 SMNPNPVV---AGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDG 300 (301)
Q Consensus 228 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (301)
+.|++... +-..++..-+.|+.-+++...+..+++.|| +||++|||||||++|++|+|+++|||-.-|||.
T Consensus 239 n~n~S~vP~~~aqpavq~~~~~sp~v~Q~hapR~a~t~~d~--~t~l~viltiAl~~lif~~~~lan~y~~dfmd~ 312 (314)
T KOG0428|consen 239 NKNTSMVPQRRAQPAVQRRLSTSPDVIQGHAPRDAHTDHDG--STVLIVILTIALAALIFRRIYLANEYIFDFMDF 312 (314)
T ss_pred ccccccCchhcccccccceecCCchhhhccCcccccCCCCC--ceehHHHHHHHHHHHHHHHHHHhccceeccccc
Confidence 33333222 224455556777777888888999999777 999999999999999999999999999999974
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-42 Score=293.39 Aligned_cols=141 Identities=30% Similarity=0.666 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCC
Q 022163 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQ 89 (301)
Q Consensus 12 a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~ 89 (301)
+.+||.||+++|++++++||.+.|.++|+++|+++|.||.+||||||+|++.|.||++|||+||+|+|.|+++ ||+..
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999987 67788
Q ss_pred CcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163 90 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT 155 (301)
Q Consensus 90 G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~ 155 (301)
|+||+|||+ +.|+|+++|+.||.+|++||.+ ||++++. ++..|+.|+.+|.+.||+||+|||.
T Consensus 82 G~IclDILk---~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 82 GRICLDILK---DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccchHHhhh---ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 999999998 7899999999999999999976 8899886 4688899999999999999999985
No 3
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-42 Score=293.03 Aligned_cols=144 Identities=31% Similarity=0.693 Sum_probs=135.0
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEecCCC-CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R 85 (301)
Q Consensus 9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~d-nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n 85 (301)
+..+.+||++|++.|+++++++|++.|..+ |+++|++.|.||.+||||||+|++.|.||++||++||+|+|.|+++ |
T Consensus 3 s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN 82 (153)
T COG5078 3 SPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN 82 (153)
T ss_pred chhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence 344999999999999999999999999987 9999999999999999999999999999999999999999999987 5
Q ss_pred ecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163 86 FETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT 155 (301)
Q Consensus 86 v~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~ 155 (301)
|+.+|+|||+||+ ++|+|+++|++||.+|++||.+ |++++++ |+.++++|+++|.++||+|+++|+.
T Consensus 83 V~~~G~vCLdIL~---~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 83 VDPSGNVCLDILK---DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred cCCCCCChhHHHh---CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 7777999999998 8999999999999999999976 7778877 6789999999999999999999874
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.3e-38 Score=274.04 Aligned_cols=142 Identities=28% Similarity=0.547 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCC
Q 022163 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQ 89 (301)
Q Consensus 12 a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~ 89 (301)
+.|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++ ||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999876 68889
Q ss_pred CcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163 90 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP 156 (301)
Q Consensus 90 G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~ 156 (301)
|.||+++|+ +.|+|+++|++||.+|++||.+ +|+++++ ++++|++|++.|.++||+|+++|+..
T Consensus 83 G~iCl~iL~---~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 83 GRICLDILK---DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CeEECccCc---ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 999999997 8899999999999999999965 7788877 67889999999999999999999963
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=4.7e-38 Score=269.20 Aligned_cols=141 Identities=31% Similarity=0.637 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCC
Q 022163 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQ 89 (301)
Q Consensus 12 a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~ 89 (301)
+.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++ ||+.+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999876 68889
Q ss_pred CcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163 90 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT 155 (301)
Q Consensus 90 G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~ 155 (301)
|.||+++|+ +.|+|+++|++||.+|++||.+ +++++++ |+++|.+|+++|+++||+|+++|+.
T Consensus 82 G~iCl~il~---~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 82 GSICLDILR---DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CEEEcccCc---CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999997 8899999999999999999965 7778776 5788999999999999999999873
No 6
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=262.29 Aligned_cols=142 Identities=29% Similarity=0.624 Sum_probs=133.1
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R 85 (301)
Q Consensus 8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n 85 (301)
|+.+|.|||++|+++|+++++.||++.|.++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|++..+ |
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999654 6
Q ss_pred ecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhh
Q 022163 86 FETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK 152 (301)
Q Consensus 86 v~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~k 152 (301)
||.+|.+|+|+|. ..|+|.|++..||.+||+||.+ ||+++.| |+.++.+++++|.+++++.+.+
T Consensus 81 vya~G~iClDiLq---NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veq 147 (152)
T KOG0419|consen 81 VYADGSICLDILQ---NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQ 147 (152)
T ss_pred cCCCCcchHHHHh---cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHH
Confidence 8999999999998 7899999999999999999965 6777765 6799999999999999988754
No 7
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-34 Score=254.91 Aligned_cols=156 Identities=41% Similarity=0.847 Sum_probs=138.0
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCceecC
Q 022163 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFET 88 (301)
Q Consensus 9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~nv~~ 88 (301)
+..+.|||+|||+.|+++|+++|.++|.++||.+||.+|.||+||||+||.|+.+|.||.+|||+||.|+++|||++|-.
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFkt 82 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKT 82 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceec
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCCCchhhhHhhHHhHHHHHHHHHHHHhhhCChhHHHHHHHHHH
Q 022163 89 QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHE 167 (301)
Q Consensus 89 ~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~nP~~~l~A~~~~~edr~~f~~kare~~~kya~~~r~~l~~~~~~ 167 (301)
+.++||+|.++||+.|+|.|+|.+||.+|.++|.++ ....++......+++.|++.+..+- +-...+.++..|+.+
T Consensus 83 ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~-~pTtGSI~tS~~~kr~lA~~SlaFN--~kn~~F~~lFPE~Ve 158 (244)
T KOG0894|consen 83 NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED-SPTTGSIETSDQDKRMLAKSSLAFN--LKNPKFCELFPEVVE 158 (244)
T ss_pred CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC-CCccCcccccHHHHHHHHHhhhhhc--cCChHHHHHhHHHHH
Confidence 999999999999999999999999999999999653 2345566666788999999887776 334445555555443
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-34 Score=238.66 Aligned_cols=147 Identities=23% Similarity=0.498 Sum_probs=133.7
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEecCC-----CCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecC
Q 022163 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-----ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP 82 (301)
Q Consensus 8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~-----dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTP 82 (301)
||..++.||+.|-+.|.++.+.||++.|.. .|++.|+|.|.|+.+|+||||.|.++|.||++||++||+++|.+|
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 677899999999999999999999999983 389999999999999999999999999999999999999999998
Q ss_pred Cc--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163 83 NG--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT 155 (301)
Q Consensus 83 n~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~ 155 (301)
.+ |||..|.|||+||+.. .+|+|+.||.+||++|+.||.+ |+.++.+ |...|.+||.+|++++|.++++|+.
T Consensus 81 l~HPNVypsgtVcLsiL~e~-~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEE-KDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CcCCCcCCCCcEehhhhccc-cCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 65 7899999999999842 4599999999999999999954 6666644 6788899999999999999999874
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-34 Score=246.55 Aligned_cols=160 Identities=29% Similarity=0.489 Sum_probs=142.1
Q ss_pred CChHHHHHHHHHHHHHhhCC---CCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc
Q 022163 8 LKNPAVKRILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG 84 (301)
Q Consensus 8 ms~~a~kRL~kEl~~L~~~p---~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~ 84 (301)
|++ +.+||++|++++.+++ -.||.+....+|+.+..+.|.||+|||||||+|.+.|.+|++|||+||+|+|.|.++
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 677 9999999999999988 679999999999999999999999999999999999999999999999999999776
Q ss_pred eec---CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchhh--hHhhHHhHHHHHHHHHHHHhhhCCh--
Q 022163 85 RFE---TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGS--LDYKKEERRALAIKSREAAPKFGTP-- 156 (301)
Q Consensus 85 nv~---~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~A--~~~~~edr~~f~~kare~~~kya~~-- 156 (301)
|.+ .+|.||||+|+ +.|.+++|++++|++||++|.. +|.++..| ++.|.++++.|.+.||.|+..||+.
T Consensus 80 HPnVSs~tGaICLDilk---d~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~~ 156 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILK---DQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGRL 156 (200)
T ss_pred cCCCCcccccchhhhhh---cccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCC
Confidence 433 36999999998 8999999999999999999975 77777766 4677799999999999999999986
Q ss_pred ----hHHHHHHHHHHHHhc
Q 022163 157 ----ERQKLIDEIHEYMLS 171 (301)
Q Consensus 157 ----~r~~l~~~~~~~~~~ 171 (301)
...++++++.++..+
T Consensus 157 ~~~~~~~~~v~~l~~mGf~ 175 (200)
T KOG0418|consen 157 PDDPWDKKKVDSLIEMGFS 175 (200)
T ss_pred CCCchhHHHHHHHHHhccc
Confidence 346677777765443
No 10
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-33 Score=232.02 Aligned_cols=144 Identities=29% Similarity=0.655 Sum_probs=129.0
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEecC-CCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--
Q 022163 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG-- 84 (301)
Q Consensus 8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~-~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~-- 84 (301)
|+..|+|||++||++|..++++||.+.|. ++|+++|.|.|.||++|+|+||+|..++.||.|||.+||+++|..-++
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 66789999999999999999999999998 689999999999999999999999999999999999999999987443
Q ss_pred eecCCCcEEeccCCCC----------CCCCCccccHHHHHHHHHHhCCCCCCCc----hhhhHhhHHhHHHHHHHHHHHH
Q 022163 85 RFETQTKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPTNPNGA----LGSLDYKKEERRALAIKSREAA 150 (301)
Q Consensus 85 nv~~~G~IClsiL~~~----------~e~WsP~~tI~~IL~~I~~lL~~nP~~~----l~A~~~~~edr~~f~~kare~~ 150 (301)
||+.+|+||++||... .+.|+|.++++.||.++.++| ..|++. ..|..++++||.+|.+.+|..+
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SML-aEPNdESgANvdA~~mWRe~R~ef~~i~~~lv 159 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSML-AEPNDESGANVDACKMWREDREEFEKIAKRLV 159 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHH-cCCCcccCcccHHHHHHHHhHHHHHHHHHHHH
Confidence 5899999999999542 268999999999999999999 555543 3367899999999999999887
Q ss_pred hh
Q 022163 151 PK 152 (301)
Q Consensus 151 ~k 152 (301)
.|
T Consensus 160 rK 161 (165)
T KOG0426|consen 160 RK 161 (165)
T ss_pred HH
Confidence 65
No 11
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-33 Score=234.45 Aligned_cols=141 Identities=29% Similarity=0.605 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEecCC-CCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eec
Q 022163 11 PAVKRILQEVKEMQSNPSDDFMSLPLE-ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFE 87 (301)
Q Consensus 11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~-dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~ 87 (301)
.+..-|+++|++|++++..|+.+...+ +|+++|.|.|.||++|+||||+|+..+.||.|||++||+++|.|.++ |||
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy 84 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY 84 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence 477889999999999999999997775 59999999999999999999999999999999999999999999765 689
Q ss_pred CCCcEEeccCCCCC----------CCCCccccHHHHHHHHHHhCCCCCCC--c--hhhhHhhHHhHHHHHHHHHHHHhh
Q 022163 88 TQTKICLSISNHHP----------EHWQPSWSVRTALVALIAFMPTNPNG--A--LGSLDYKKEERRALAIKSREAAPK 152 (301)
Q Consensus 88 ~~G~IClsiL~~~~----------e~WsP~~tI~~IL~~I~~lL~~nP~~--~--l~A~~~~~edr~~f~~kare~~~k 152 (301)
.+|+||++||.... +.|.|..|+++||++|++|| +.|++ + +.|+..|++++++|.++++.++.+
T Consensus 85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL-~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~ 162 (171)
T KOG0425|consen 85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISML-NSPNDESPANVDAAKEWRENPEEYKKKVRRCVRR 162 (171)
T ss_pred CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHH-cCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHH
Confidence 99999999996421 68999999999999999999 55543 3 236788899999999999998865
No 12
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3.9e-33 Score=235.46 Aligned_cols=134 Identities=39% Similarity=0.791 Sum_probs=117.5
Q ss_pred HHHHHHHHHhhCCCCCeEEecCCC-CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCCCc
Q 022163 15 RILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQTK 91 (301)
Q Consensus 15 RL~kEl~~L~~~p~~gi~a~p~~d-nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~G~ 91 (301)
||++|+++|+++++.|+.+.+.++ |+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+++ ||+.+|+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999986 9999999999999999999999999999999999999999999765 6888999
Q ss_pred EEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHH
Q 022163 92 ICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAA 150 (301)
Q Consensus 92 IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~ 150 (301)
||+++|+ .+.|+|.++|.+||.+|+++|.+ +++++++ |+.++++|+++|.++||+|.
T Consensus 81 icl~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILN--PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGT--TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhh--cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 9999997 34699999999999999999954 5566665 57888999999999999873
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2.8e-32 Score=230.70 Aligned_cols=135 Identities=38% Similarity=0.750 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCCCc
Q 022163 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQTK 91 (301)
Q Consensus 14 kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~G~ 91 (301)
|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++ ||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999765 6888999
Q ss_pred EEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHH
Q 022163 92 ICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAA 150 (301)
Q Consensus 92 IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~ 150 (301)
||+++|+. +.|+|+++|++||.+|+++|.+ +++++.+ |+.++++|++.|.++|++|+
T Consensus 82 icl~~l~~--~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKT--HGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCC--CCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 99999982 2499999999999999999964 4455555 67888999999999999874
No 14
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.3e-32 Score=230.30 Aligned_cols=138 Identities=25% Similarity=0.519 Sum_probs=125.8
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--ee
Q 022163 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RF 86 (301)
Q Consensus 9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv 86 (301)
.....|||++|+..|.....+||++.|.++|++.|.++|.||.+|+|||-.|++.+.||.+||++||+|+|+||++ ||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999987 67
Q ss_pred cCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHH
Q 022163 87 ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAA 150 (301)
Q Consensus 87 ~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~ 150 (301)
+..|.|||+||+ +.|+..|.+++||.+||+||-+ |-..++| |++++. |.++|.+.+.+.-
T Consensus 107 D~~GnIcLDILk---dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y 169 (175)
T KOG0421|consen 107 DLSGNICLDILK---DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALY 169 (175)
T ss_pred cccccchHHHHH---HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHh
Confidence 888999999998 9999999999999999999954 4456787 468884 9999998876554
No 15
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.98 E-value=1.6e-31 Score=226.98 Aligned_cols=139 Identities=34% Similarity=0.707 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEecCCC-CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCCC
Q 022163 14 KRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQT 90 (301)
Q Consensus 14 kRL~kEl~~L~~~p~~gi~a~p~~d-nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~G 90 (301)
+||++|+++|++++++|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++ ||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998875 9999999999999999999999999999999999999999999865 688999
Q ss_pred cEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhC
Q 022163 91 KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG 154 (301)
Q Consensus 91 ~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya 154 (301)
.||+++|. +++|+|.+++++||.+|+++|.+ +++++.+ |+.++.++++.|+++++++++||+
T Consensus 81 ~icl~~l~--~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILK--QEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcC--CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999996 26899999999999999999965 5566655 678889999999999999999874
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.9e-29 Score=206.67 Aligned_cols=142 Identities=25% Similarity=0.488 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHhhCCCCCeEE-ecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecC
Q 022163 12 AVKRILQEVKEMQSNPSDDFMS-LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFET 88 (301)
Q Consensus 12 a~kRL~kEl~~L~~~p~~gi~a-~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~ 88 (301)
+.+||+||+.+|+++....+.- .-.+.|++.|++.|. |.+-||..|.|+++|.||.+|||+||++.|.|.+| ||+.
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 7899999999999998775533 334679999999999 89999999999999999999999999999999877 6788
Q ss_pred CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchhh--hHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163 89 QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGS--LDYKKEERRALAIKSREAAPKFGTP 156 (301)
Q Consensus 89 ~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~A--~~~~~edr~~f~~kare~~~kya~~ 156 (301)
.|.||+.|+. .++|+|.+.+.+||.+|..++.+ +|..++.+ +..|.+|+..|.++|.+|++||+.+
T Consensus 82 ~gqvClPiis--~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 82 KGQVCLPIIS--AENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred CCceeeeeee--cccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 8999999998 48999999999999999999965 67778764 6788899999999999999999865
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-27 Score=206.36 Aligned_cols=150 Identities=27% Similarity=0.496 Sum_probs=137.9
Q ss_pred CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEe
Q 022163 1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL 80 (301)
Q Consensus 1 ma~~~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~Fl 80 (301)
|+ ...|.-.-.+|.|.+|++.|...||.||.+.+.++|+....+.|.||.||||++|+|++.+.+..|||.+||+-.|+
T Consensus 1 m~-snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFl 79 (223)
T KOG0423|consen 1 MA-SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFL 79 (223)
T ss_pred CC-cccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceee
Confidence 66 56788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163 81 TPNG--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT 155 (301)
Q Consensus 81 TPn~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~ 155 (301)
|+++ ||..+|.||.+.|+ .+|+|.++|++||..|.|||.+ ||+.++| |-.++.+++++|.+.+|
T Consensus 80 TKIFHPNVaaNGEICVNtLK---kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rAR-------- 148 (223)
T KOG0423|consen 80 TKIFHPNVAANGEICVNTLK---KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRAR-------- 148 (223)
T ss_pred eeeccCCcccCceehhhhhh---cccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHH--------
Confidence 9887 57789999999998 8999999999999999999986 9998887 44666799999998886
Q ss_pred hhHHHHHHHHHH
Q 022163 156 PERQKLIDEIHE 167 (301)
Q Consensus 156 ~~r~~l~~~~~~ 167 (301)
++++||+
T Consensus 149 -----l~TeIHa 155 (223)
T KOG0423|consen 149 -----LYTEIHA 155 (223)
T ss_pred -----HHHHhhc
Confidence 7778886
No 18
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9e-28 Score=206.31 Aligned_cols=141 Identities=23% Similarity=0.512 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCce--ec-C
Q 022163 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGR--FE-T 88 (301)
Q Consensus 12 a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~n--v~-~ 88 (301)
.-|||..|+..|.... ..+....+++.+++|.++||.+||||||+|+++|.+|++|||+.|+|.|+|+++| |+ .
T Consensus 4 ~~rRid~Dv~KL~~s~---yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMSD---YEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhcC---CeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 5689999999998754 4566678889999999999999999999999999999999999999999998774 33 2
Q ss_pred CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCC--CCCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChhH
Q 022163 89 QTKICLSISNHHPEHWQPSWSVRTALVALIAFMP--TNPNGALG--SLDYKKEERRALAIKSREAAPKFGTPER 158 (301)
Q Consensus 89 ~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~--~nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~r 158 (301)
.|.|||+.++ ..|+|.+.+..|+..+.-.|. .||.|++| |+.++.++++.|++++|++++|||.+..
T Consensus 81 SGsVCLDViN---QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~ 151 (189)
T KOG0416|consen 81 SGSVCLDVIN---QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEA 151 (189)
T ss_pred cCccHHHHHh---hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhh
Confidence 5999999998 899999999999988765554 48888988 6778889999999999999999998874
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.7e-25 Score=185.15 Aligned_cols=115 Identities=25% Similarity=0.599 Sum_probs=108.2
Q ss_pred cCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc
Q 022163 5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG 84 (301)
Q Consensus 5 ~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~ 84 (301)
+.-|+..|.+||+||+.+||.+||.|+... ..+|+..|.+.+.|.+||.|+|..|.+.+.||+.||+..|.|.|..|.+
T Consensus 9 rk~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P 87 (161)
T KOG0427|consen 9 RKALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAP 87 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCC
Confidence 556778899999999999999999999776 7799999999999999999999999999999999999999999999754
Q ss_pred ---eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC
Q 022163 85 ---RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 123 (301)
Q Consensus 85 ---nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~ 123 (301)
|||+||.|||+||. +.|+|++++.+|.++|.++|.+
T Consensus 88 ~HPHiYSNGHICL~iL~---d~WsPAmsv~SvClSIlSMLSS 126 (161)
T KOG0427|consen 88 LHPHIYSNGHICLDILY---DSWSPAMSVQSVCLSILSMLSS 126 (161)
T ss_pred CCCceecCCeEEEEeec---ccCCcchhhHHHHHHHHHHHcc
Confidence 89999999999998 9999999999999999999964
No 20
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.1e-25 Score=192.08 Aligned_cols=141 Identities=21% Similarity=0.429 Sum_probs=120.2
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEE-ecC-CCCcc--EEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCC
Q 022163 8 LKNPAVKRILQEVKEMQSNPSDDFMS-LPL-EENIF--EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPN 83 (301)
Q Consensus 8 ms~~a~kRL~kEl~~L~~~p~~gi~a-~p~-~dnl~--~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn 83 (301)
-.+.+.-||++|+.++.-- +++.. .+. .+++. +++++|. |..+.|+||.|+|.+.+|+.||++||+|+++|.+
T Consensus 25 ~~s~a~lrl~~di~elnLp--~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV 101 (184)
T KOG0420|consen 25 KVSAALLRLKKDILELNLP--PTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKV 101 (184)
T ss_pred cccHHHHHHHhhhhhccCC--CccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecc
Confidence 3446788888888887653 33332 222 33333 5999999 9999999999999999999999999999999987
Q ss_pred c--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhC
Q 022163 84 G--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG 154 (301)
Q Consensus 84 ~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya 154 (301)
+ ||+.+|.|||+||+ ++|+|..+|.+|+.+|+.||.+ +|+|++| |++++.+|++.|+.++|+....|+
T Consensus 102 ~HPNId~~GnVCLnILR---edW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 102 YHPNIDLDGNVCLNILR---EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred ccCCcCCcchHHHHHHH---hcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 6 68899999999999 8899999999999999999977 8999998 788999999999999999887665
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.5e-16 Score=161.44 Aligned_cols=114 Identities=25% Similarity=0.432 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecC----CceecC
Q 022163 13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP----NGRFET 88 (301)
Q Consensus 13 ~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTP----n~nv~~ 88 (301)
.+..+.|++-|..+-+.||+++..++.+.-..+.|.||.+|||.+|.|.|.|.||++||..||.|.+.+- |+|.|.
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~ 932 (1101)
T KOG0895|consen 853 AKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE 932 (1101)
T ss_pred HHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc
Confidence 3445567777778889999999999988888999999999999999999999999999999999999883 446889
Q ss_pred CCcEEeccCCCC----CCCCCccccHHHHHHHHHHhCC-CCCC
Q 022163 89 QTKICLSISNHH----PEHWQPSWSVRTALVALIAFMP-TNPN 126 (301)
Q Consensus 89 ~G~IClsiL~~~----~e~WsP~~tI~~IL~~I~~lL~-~nP~ 126 (301)
+|+||+++|++| .+-|+|+.++.+||++||.|+. +.|+
T Consensus 933 ~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py 975 (1101)
T KOG0895|consen 933 DGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPY 975 (1101)
T ss_pred ccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccc
Confidence 999999999986 3789999999999999999975 4664
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.4e-14 Score=129.61 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCC--CCCCeeEEecCCce--ecC-
Q 022163 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP--FKPPSFMLLTPNGR--FET- 88 (301)
Q Consensus 14 kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP--~~PP~V~FlTPn~n--v~~- 88 (301)
--|+.||..+.+.+.+||++.|+..|-+.|+++|++ ..+.|.||+|+|+|.+|++|| ..-|+|.|.++.+| |.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 457788888888999999999999999999999995 667999999999999999999 46899999998654 333
Q ss_pred CCcEEeccCCCCCCCCC-ccccHHHHHHHHHHhCCCCCCCc------hhhhHhhHHhHHHHHHHHHHHHhhhC
Q 022163 89 QTKICLSISNHHPEHWQ-PSWSVRTALVALIAFMPTNPNGA------LGSLDYKKEERRALAIKSREAAPKFG 154 (301)
Q Consensus 89 ~G~IClsiL~~~~e~Ws-P~~tI~~IL~~I~~lL~~nP~~~------l~A~~~~~edr~~f~~kare~~~kya 154 (301)
++.+|++-.- ++ |. -...|.+||..|+..|. +|++. -+|+.+|++++++|.++++++++...
T Consensus 101 skeLdl~raf--~e-WRk~ehhiwqvL~ylqriF~-dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr 169 (258)
T KOG0429|consen 101 SKELDLNRAF--PE-WRKEEHHIWQVLVYLQRIFY-DPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASR 169 (258)
T ss_pred ccceeHhhhh--hh-hhccccHHHHHHHHHHHHhc-CcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5778876432 34 84 47789999999999994 44432 23788999999999999999986443
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.7e-14 Score=151.71 Aligned_cols=116 Identities=26% Similarity=0.448 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecC-----Cce
Q 022163 11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP-----NGR 85 (301)
Q Consensus 11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTP-----n~n 85 (301)
.-.+|+++|++.|.++.+.|+.+.|.+..+...+++|.||.+|||++|+|.|.|.||..||..||.|.++|- |+|
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999994 556
Q ss_pred ecCCCcEEeccCCCCC----CCCCcc-ccHHHHHHHHHHhCCCC-CC
Q 022163 86 FETQTKICLSISNHHP----EHWQPS-WSVRTALVALIAFMPTN-PN 126 (301)
Q Consensus 86 v~~~G~IClsiL~~~~----e~WsP~-~tI~~IL~~I~~lL~~n-P~ 126 (301)
.|.+|+||+++|..+- +.|+|. .+|.++|..|+.++..+ |.
T Consensus 362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~Py 408 (1101)
T KOG0895|consen 362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEPY 408 (1101)
T ss_pred cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCcc
Confidence 7889999999998763 579998 89999999999999654 54
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.8e-10 Score=93.82 Aligned_cols=106 Identities=27% Similarity=0.431 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCC--CC--ccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc-e-
Q 022163 12 AVKRILQEVKEMQSNPSDDFMSLPLE--EN--IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG-R- 85 (301)
Q Consensus 12 a~kRL~kEl~~L~~~p~~gi~a~p~~--dn--l~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~-n- 85 (301)
..-||.+|+.+=++--.++-...-.+ +| +..|...|.||+.|+||+.+|.++|.+..+||..||.|+|.|.+- +
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 34578888887766554554333332 33 568999999999999999999999999999999999999999642 1
Q ss_pred e-cCCCcEE---eccCCCCCCCCCccccHHHHHHHHHHhC
Q 022163 86 F-ETQTKIC---LSISNHHPEHWQPSWSVRTALVALIAFM 121 (301)
Q Consensus 86 v-~~~G~IC---lsiL~~~~e~WsP~~tI~~IL~~I~~lL 121 (301)
+ ..+|.|- +..| .+|+-.++++.+|..++-.|
T Consensus 86 vn~~~g~Vd~~~i~~L----~~W~~~y~~~~vl~~lr~~m 121 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVL----ARWQRSYSIKMVLGQLRKEM 121 (138)
T ss_pred cccCCCccCccccchh----hcccccchhhHHHHhhhHHH
Confidence 1 2344442 2334 68999999999999998665
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.8e-06 Score=70.60 Aligned_cols=61 Identities=16% Similarity=0.347 Sum_probs=53.7
Q ss_pred EEEEEEcCCCCCCCCCeeEEecCCc---eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCC
Q 022163 60 YHGRIQLPAEYPFKPPSFMLLTPNG---RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP 122 (301)
Q Consensus 60 F~~~I~fP~dYP~~PP~V~FlTPn~---nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~ 122 (301)
.-+.+.|++|||+.||.+|...|.. -+-.+|.||+.+|. +++|+.+++|+.++++|...+-
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt--~qgwssay~Ve~vi~qiaatlV 76 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT--KQGWSSAYEVERVIMQIAATLV 76 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc--cccccchhhHHHHHHHHHHHhh
Confidence 3467889999999999999999974 45668999999998 5899999999999999999884
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.06 E-value=1.4e-05 Score=67.32 Aligned_cols=70 Identities=24% Similarity=0.524 Sum_probs=58.2
Q ss_pred CCCeEEEEEEcCCCCCCCCCeeEEecCC-----ceecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCC
Q 022163 56 EGGIYHGRIQLPAEYPFKPPSFMLLTPN-----GRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 125 (301)
Q Consensus 56 eGG~F~~~I~fP~dYP~~PP~V~FlTPn-----~nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~nP 125 (301)
.|+.|.+.|.||++||..||.|....|. .|++.+|.+|+---....+.|.|.-.+.++|.....+|.+.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~~~ 108 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLEDGL 108 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999888753 389999999993112224899999999999999999995443
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.85 E-value=1.8e-05 Score=65.93 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=54.3
Q ss_pred CccEEEEEEeCCCCCCCCCCeE--EEEEEcCCCCCCCCCeeEEec-C------CceecCCCcEEeccCCCCCCCCCc-cc
Q 022163 39 NIFEWQFAIRGPGDTEFEGGIY--HGRIQLPAEYPFKPPSFMLLT-P------NGRFETQTKICLSISNHHPEHWQP-SW 108 (301)
Q Consensus 39 nl~~W~v~I~GP~~TpYeGG~F--~~~I~fP~dYP~~PP~V~FlT-P------n~nv~~~G~IClsiL~~~~e~WsP-~~ 108 (301)
.+....++|. -.|+|..| .+.|.+|.+||..||.+.... + +-+++.+|+|++..| +.|++ ..
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL----~~W~~~~s 102 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL----QNWNPPSS 102 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH----HT--TTTS
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh----ccCCCCCC
Confidence 4445555554 35888888 467889999999999996653 1 227899999999999 47987 88
Q ss_pred cHHHHHHHHHHhCCCCC
Q 022163 109 SVRTALVALIAFMPTNP 125 (301)
Q Consensus 109 tI~~IL~~I~~lL~~nP 125 (301)
++.+++..+...|.++|
T Consensus 103 ~L~~lv~~l~~~F~~~p 119 (121)
T PF05743_consen 103 NLVDLVQELQAVFSEEP 119 (121)
T ss_dssp -HHHHHHHHHHCCCHS-
T ss_pred CHHHHHHHHHHHHhHcC
Confidence 99999999998885543
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.27 E-value=0.00017 Score=61.41 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHhh-------CCCCCeEEecCCCCccEEEEEEeCCCCCCCCC--CeEEEEEEcCCCCCCCCCeeEEe
Q 022163 10 NPAVKRILQEVKEMQS-------NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEG--GIYHGRIQLPAEYPFKPPSFMLL 80 (301)
Q Consensus 10 ~~a~kRL~kEl~~L~~-------~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeG--G~F~~~I~fP~dYP~~PP~V~Fl 80 (301)
..-..||..||..|-+ +....|.+..+ .+=+.|.+..-= .|+- ..|.+.+.+|..||..||.+..-
T Consensus 23 ~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn-~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lP 97 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIKYVENNKENDNDWFRLESN-KEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALP 97 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-G
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCeEEeccC-CCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceecc
Confidence 3457899999999854 22233433322 222344322110 0111 34667888999999999999875
Q ss_pred c---CCceecCCCcEEeccCCCCCCCC---CccccHHHHH
Q 022163 81 T---PNGRFETQTKICLSISNHHPEHW---QPSWSVRTAL 114 (301)
Q Consensus 81 T---Pn~nv~~~G~IClsiL~~~~e~W---sP~~tI~~IL 114 (301)
. +.-..|..|+||++.= ..--| .|.++|.+.|
T Consensus 98 eLdGKTaKMYRGGkIClt~H--FkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 98 ELDGKTAKMYRGGKICLTDH--FKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp GGTTT-SSBCCCCBB---TT--HHHHHHCTTTT--HHHHH
T ss_pred ccCCchhhhhcCceEeeecc--cchhhhhcCCchhHHHHH
Confidence 4 2224688999999742 11123 3455666554
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0028 Score=61.00 Aligned_cols=110 Identities=19% Similarity=0.327 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHHhhCCCCC-eEEecC--CCCccEEEEEEeCCCCCCCCCCeEE--EEEEcCCCCCCCCCeeEEecC
Q 022163 8 LKNPAVKRILQEVKEMQSNPSDD-FMSLPL--EENIFEWQFAIRGPGDTEFEGGIYH--GRIQLPAEYPFKPPSFMLLTP 82 (301)
Q Consensus 8 ms~~a~kRL~kEl~~L~~~p~~g-i~a~p~--~dnl~~W~v~I~GP~~TpYeGG~F~--~~I~fP~dYP~~PP~V~FlTP 82 (301)
-...+.+.+...+.......+.. -+...+ ..+++...++|. .+|.|-.|- +.|.+.+.||+.||.+.....
T Consensus 17 ~~~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT 92 (365)
T KOG2391|consen 17 YKDLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPT 92 (365)
T ss_pred chhhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCC
Confidence 33345555555555555443332 223333 235666666664 567787765 677899999999998854431
Q ss_pred C-------ceecCCCcEEeccCCCCCCCCCc-cccHHHHHHHHHHhCCCCC
Q 022163 83 N-------GRFETQTKICLSISNHHPEHWQP-SWSVRTALVALIAFMPTNP 125 (301)
Q Consensus 83 n-------~nv~~~G~IClsiL~~~~e~WsP-~~tI~~IL~~I~~lL~~nP 125 (301)
+ -||+.+|+|.|..|. .|.+ ++.+..++..+.+.|.++|
T Consensus 93 ~~M~ik~~~hVd~nG~V~LPYLh----~W~~pssdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 93 STMIIKVHEHVDPNGKVYLPYLH----NWDPPSSDLVGLIQELIAAFSEDP 139 (365)
T ss_pred chhhhHHhhccCCCCeEechhhc----cCCCccchHHHHHHHHHHHhcCCC
Confidence 1 279999999999994 7965 7788888888888885533
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.0037 Score=52.65 Aligned_cols=79 Identities=20% Similarity=0.320 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCC----------eEEEEEEcCCCCCCCCCeeEEe
Q 022163 11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGG----------IYHGRIQLPAEYPFKPPSFMLL 80 (301)
Q Consensus 11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG----------~F~~~I~fP~dYP~~PP~V~Fl 80 (301)
.=.+||..||+.|-.. +....++-..|+-.=..++||-|-|. .|.+.+.+|-.||-..|.+..-
T Consensus 27 ~wvqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialp 100 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALP 100 (167)
T ss_pred HHHHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccc
Confidence 3478999999998641 11122233345444455777777763 4667788899999999998654
Q ss_pred c---CCceecCCCcEEec
Q 022163 81 T---PNGRFETQTKICLS 95 (301)
Q Consensus 81 T---Pn~nv~~~G~ICls 95 (301)
- +.-..|..|+|||.
T Consensus 101 eldgktakmyrggkiclt 118 (167)
T KOG3357|consen 101 ELDGKTAKMYRGGKICLT 118 (167)
T ss_pred ccCchhhhhhcCceEeec
Confidence 3 12245788999986
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.86 E-value=0.091 Score=41.51 Aligned_cols=68 Identities=21% Similarity=0.216 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeC--CCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecC
Q 022163 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRG--PGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP 82 (301)
Q Consensus 14 kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~G--P~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTP 82 (301)
.+...|+..|+.--+..+ ......+...+.+.+.+ ...+.-....+++.|.||++||..+|.|.+.++
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 467788888887443333 22233445566777732 233444466899999999999999999986654
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.05 E-value=0.3 Score=38.28 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCCCCCCCeeEEec
Q 022163 57 GGIYHGRIQLPAEYPFKPPSFMLLT 81 (301)
Q Consensus 57 GG~F~~~I~fP~dYP~~PP~V~FlT 81 (301)
.-.+.+.|.||.+||..+|.|.+.+
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEEC
Confidence 4558899999999999999998764
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.02 E-value=0.57 Score=39.27 Aligned_cols=91 Identities=18% Similarity=0.303 Sum_probs=58.9
Q ss_pred CCeEEecCCCCccEEEEEEeC--CCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCceecC--------------CCcE
Q 022163 29 DDFMSLPLEENIFEWQFAIRG--PGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFET--------------QTKI 92 (301)
Q Consensus 29 ~gi~a~p~~dnl~~W~v~I~G--P~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~nv~~--------------~G~I 92 (301)
.|+...-..+.-..|.+ |.| -+.+.|....-.+.|.+|..||..+|-+.+..|-...-. +|+.
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~ 90 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRT 90 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCee
Confidence 34445444444456765 776 345669999999999999999999998888886432111 2443
Q ss_pred EeccCCCCCCCCCccc-cHHHHHHHHHHhC
Q 022163 93 CLSISNHHPEHWQPSW-SVRTALVALIAFM 121 (301)
Q Consensus 93 ClsiL~~~~e~WsP~~-tI~~IL~~I~~lL 121 (301)
---+.++ ...|.|.. +|.+.|..|...|
T Consensus 91 wQrWSRH-~~~W~P~~D~l~T~l~~v~~~L 119 (122)
T PF14462_consen 91 WQRWSRH-NNPWRPGVDDLWTHLARVEHAL 119 (122)
T ss_pred eeeecCC-CCCCCCCCCcHHHHHHHHHHHH
Confidence 3333332 35687743 5777777666554
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=87.35 E-value=0.61 Score=40.84 Aligned_cols=63 Identities=24% Similarity=0.485 Sum_probs=47.7
Q ss_pred CCeEE---EEEEcCCCCCCCCCeeEEecCC-----ceecCC-----CcEEeccCCCCCCCCCccccHHHHHHHHHHhC
Q 022163 57 GGIYH---GRIQLPAEYPFKPPSFMLLTPN-----GRFETQ-----TKICLSISNHHPEHWQPSWSVRTALVALIAFM 121 (301)
Q Consensus 57 GG~F~---~~I~fP~dYP~~PP~V~FlTPn-----~nv~~~-----G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL 121 (301)
+|+.. +.|.|+.+||+.+|.|.++... .|++.. ..+|+.--.. ..|.+.+++..+|..|..-|
T Consensus 49 ~gir~~E~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~--~e~~~~~g~~~~l~rl~~Wl 124 (162)
T PF14457_consen 49 VGIRRVERVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPW--SEWRPSWGPEGFLDRLFDWL 124 (162)
T ss_pred CCccccceEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCH--HHhhhccCHHHHHHHHHHHH
Confidence 35554 5689999999999988777632 355554 6799976553 57999999999999998877
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=74.76 E-value=3.7 Score=39.22 Aligned_cols=87 Identities=21% Similarity=0.391 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCceecCCC
Q 022163 11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQT 90 (301)
Q Consensus 11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~nv~~~G 90 (301)
....+|.+|+.+|..+..-.+ -.++++...++.+. ++ ...-.++|.+|.+||+++|.+..--|..
T Consensus 99 ~~ys~ll~EIe~IGW~kl~~i---~~d~~ls~i~l~~~---D~---~R~H~l~l~l~~~yp~~~p~~~~~~P~~------ 163 (291)
T PF09765_consen 99 QYYSNLLKEIEAIGWDKLVQI---QFDDDLSTIKLKIF---DS---SRQHYLELKLPSNYPFEPPSCSLDLPIP------ 163 (291)
T ss_dssp GGC-CHHHHHHHHHCGCCEEE---EE-CCCSEEEEEEE---TT---CEEEEEEEETTTTTTTSEEEECS-TTS-------
T ss_pred HHHHHHHHHHHHhccccceEE---ecCCCccEEEEEEE---cC---CceEEEEEEECCCCCCCCceeeCCCCcc------
Confidence 456788899998887554222 13678888899988 22 2456789999999999999764333331
Q ss_pred cEEeccCCCCCCCCCc-cccHHHHHHHHHHhC
Q 022163 91 KICLSISNHHPEHWQP-SWSVRTALVALIAFM 121 (301)
Q Consensus 91 ~IClsiL~~~~e~WsP-~~tI~~IL~~I~~lL 121 (301)
+. ..|.+ ..++.+++..++..|
T Consensus 164 -----~~----~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 164 -----FS----LSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp -----HH----HHHHCHT-SHHHHHHHHHHHH
T ss_pred -----hh----hhhcccccCHHHHHHHHHHHH
Confidence 11 35888 778888888777666
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=70.34 E-value=14 Score=39.72 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeE-EEEEEcCCCCCCC-CCeeEEecC
Q 022163 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY-HGRIQLPAEYPFK-PPSFMLLTP 82 (301)
Q Consensus 12 a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F-~~~I~fP~dYP~~-PP~V~FlTP 82 (301)
..+-|.+|+.-|-..- +++.+.-.+---..-.+.+.||-.-- .|.+| ++.|.||.+||.+ +|+++|..|
T Consensus 421 ~pQnLgeE~S~Ig~k~-~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGVKI-RNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhccc-cccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4455667776664422 23323222223345667777765433 44444 7889999999975 799999875
No 37
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=64.12 E-value=6.4 Score=32.07 Aligned_cols=42 Identities=26% Similarity=0.539 Sum_probs=31.4
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHH--------HHhcCCceeeccCC
Q 022163 260 QKPADDRLFTWAAVGLTIAILVLLLKKF--------MKSNGHGTVFMDGS 301 (301)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 301 (301)
+.|..-+.+..+|+|+++|+++.++.+- +-+-=||+.|-||.
T Consensus 3 pPpd~sk~~l~~aiG~~lal~i~~ltr~tlPhvGDniH~LPhGG~YrDGT 52 (104)
T PF01307_consen 3 PPPDYSKSYLAAAIGVSLALIIFTLTRSTLPHVGDNIHSLPHGGRYRDGT 52 (104)
T ss_pred CcCCCccchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcccCCC
Confidence 3455667788999999999998887652 22335899999983
No 38
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=59.89 E-value=32 Score=31.61 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCC--CeEEEEEEcCCCCCCCCCeeEEecC
Q 022163 15 RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEG--GIYHGRIQLPAEYPFKPPSFMLLTP 82 (301)
Q Consensus 15 RL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeG--G~F~~~I~fP~dYP~~PP~V~FlTP 82 (301)
-...|+.-|..--+.-+... .+.+...+.+.|. +...-++. |.|.+.+.++.+||..+|-+.+..+
T Consensus 6 eQe~E~EaLeSIY~de~~~i-~~~~~~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~~~~~ 73 (215)
T KOG4018|consen 6 EQEEELEALESIYPDEFKHI-NSEDPPIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLIEAFEN 73 (215)
T ss_pred HHHHHHHHHHHhccchhhhh-hccCCccceeeee-cccccCCCccccEEEEEEccCCCCCCCcceecccc
Confidence 34566666665433333111 2233333666666 33222222 2788999999999999999955443
No 39
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=52.83 E-value=14 Score=28.95 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHH
Q 022163 263 ADDRLFTWAAVGLTIAILVLLLKK 286 (301)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~ 286 (301)
.-||++-|+|+++.++.++++++|
T Consensus 67 ~~D~~li~~~~~~f~~~v~yI~~r 90 (92)
T PF03908_consen 67 KTDRILIFFAFLFFLLVVLYILWR 90 (92)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhh
Confidence 469999999999999999999887
No 40
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=52.65 E-value=16 Score=25.03 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 022163 267 LFTWAAVGLTIAILVLLL 284 (301)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~ 284 (301)
++-|+|.|+|+.+++.++
T Consensus 5 ~yVW~sYg~t~~~l~~l~ 22 (46)
T PF04995_consen 5 FYVWSSYGVTALVLAGLI 22 (46)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999988777665
No 41
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=50.36 E-value=19 Score=24.67 Aligned_cols=18 Identities=33% Similarity=0.757 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 022163 267 LFTWAAVGLTIAILVLLL 284 (301)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~ 284 (301)
.+-|+|.|+|+..++.|+
T Consensus 6 ~yVW~sYg~t~l~l~~li 23 (45)
T TIGR03141 6 FYVWLAYGITALVLAGLI 23 (45)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999988876654
No 42
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=48.60 E-value=1.1e+02 Score=26.93 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=17.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 022163 262 PADDRLFTWAAVGLTIAILVLLLKKFMK 289 (301)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (301)
|.--|.| ...+|++.+|+++++-+.++
T Consensus 92 ~~l~R~~-~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 92 PMLKRAL-YVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred cchhhhH-HHHHHHHHHHHHHHHHHHHh
Confidence 3344777 56678887777766655554
No 43
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=46.50 E-value=20 Score=30.39 Aligned_cols=24 Identities=38% Similarity=0.747 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhcCCceeeccC
Q 022163 277 IAILVLLLKKFMKSNGHGTVFMDG 300 (301)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~ 300 (301)
+.++.=.+.+||+++|+|.|++||
T Consensus 60 L~~l~~~i~~fl~~~~~~vViiD~ 83 (136)
T PF05763_consen 60 LHKLLDTIVRFLKENGNGVVIIDG 83 (136)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEec
Confidence 456667789999999999999997
No 44
>COG4499 Predicted membrane protein [Function unknown]
Probab=41.96 E-value=19 Score=35.90 Aligned_cols=21 Identities=29% Similarity=0.679 Sum_probs=17.3
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 022163 264 DDRLFTWAAVGLTIAILVLLL 284 (301)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~ 284 (301)
.=+.|.|+||||+|+.|.+++
T Consensus 216 k~~ifk~~giGliillvl~li 236 (434)
T COG4499 216 KYTIFKYFGIGLIILLVLLLI 236 (434)
T ss_pred cceehhhHHHhHHHHHHHHHH
Confidence 568899999999988776665
No 45
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.19 E-value=27 Score=27.63 Aligned_cols=17 Identities=41% Similarity=0.747 Sum_probs=13.3
Q ss_pred chhHHHHHHHHHHHHHH
Q 022163 266 RLFTWAAVGLTIAILVL 282 (301)
Q Consensus 266 ~~~~~~~~~~~~~~~~~ 282 (301)
-.|+|||||+.+..+.|
T Consensus 17 i~f~waafg~s~~m~~~ 33 (95)
T COG4298 17 IMFNWAAFGASYFMLGL 33 (95)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 47999999988765544
No 46
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=38.41 E-value=41 Score=28.53 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCCC-CCCCeeEEec
Q 022163 57 GGIYHGRIQLPAEYP-FKPPSFMLLT 81 (301)
Q Consensus 57 GG~F~~~I~fP~dYP-~~PP~V~FlT 81 (301)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 489999999999999 9999999874
No 47
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=37.07 E-value=43 Score=29.98 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCCCCCCeeEEec
Q 022163 57 GGIYHGRIQLPAEYPFKPPSFMLLT 81 (301)
Q Consensus 57 GG~F~~~I~fP~dYP~~PP~V~FlT 81 (301)
.|.|.|+=.||--||.++|.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4899999999999999999999874
No 48
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=37.02 E-value=38 Score=25.42 Aligned_cols=18 Identities=39% Similarity=0.898 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 022163 267 LFTWAAVGLTIAILVLLL 284 (301)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~ 284 (301)
.+-|.|+|+|+.-++.|+
T Consensus 17 fyVWlA~~~tll~l~~l~ 34 (67)
T COG3114 17 FYVWLAVGMTLLPLAVLV 34 (67)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478999999987766665
No 49
>PF12669 P12: Virus attachment protein p12 family
Probab=36.87 E-value=30 Score=25.13 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=11.7
Q ss_pred HHHHHHHHHH-HHHHHHhcCCc
Q 022163 274 GLTIAILVLL-LKKFMKSNGHG 294 (301)
Q Consensus 274 ~~~~~~~~~~-~~~~~~~~~~~ 294 (301)
++.+++++++ +++|+|..--|
T Consensus 6 ~Ii~~~~~~v~~r~~~k~~K~G 27 (58)
T PF12669_consen 6 IIILAAVAYVAIRKFIKDKKKG 27 (58)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 3444444443 59999764433
No 50
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=35.96 E-value=41 Score=25.16 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=15.1
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 022163 265 DRLFTWAAVGLTIAILVLLLK 285 (301)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~ 285 (301)
|-+|..||||+.+|++--+||
T Consensus 4 ~lIFkIAgVGIlvavl~~vLk 24 (64)
T TIGR02848 4 SLIFKIAGVGILVAVIHTILK 24 (64)
T ss_pred hhhhhHhhHHHHHHHHHHHHH
Confidence 557899999987776554444
No 51
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=35.52 E-value=40 Score=21.26 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=10.3
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHH
Q 022163 258 RVQKPADDRLFTWAAVGLTIAILVLL 283 (301)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (301)
...++...|+||+.=+=.+++|++++
T Consensus 6 ~~~~~~~~~GFTLiEllVa~~I~~il 31 (31)
T PF13544_consen 6 RRRRRRRQRGFTLIELLVAMAILAIL 31 (31)
T ss_dssp ------------HHHHHHHHHHHHHH
T ss_pred ccccccccCCccHHHHHHHHHHHHHC
Confidence 33455678999998877777777654
No 52
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=29.56 E-value=1e+02 Score=30.16 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=29.5
Q ss_pred ccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEe
Q 022163 40 IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL 80 (301)
Q Consensus 40 l~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~Fl 80 (301)
...+.+.| ||.|-..+-.|.|...||..||-|.|-
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~ 87 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFG 87 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeC
Confidence 33556666 488999999999999999999999996
No 53
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=28.45 E-value=1.3e+02 Score=23.33 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=28.9
Q ss_pred cEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCce
Q 022163 41 FEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGR 85 (301)
Q Consensus 41 ~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~n 85 (301)
.+|.+.+.|+.+.--..-+=++.+.+-+.|+. |...+..|-+.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 58999999988865445556788888888775 77777666443
No 54
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=28.33 E-value=92 Score=30.79 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=32.5
Q ss_pred ccccCCCccccccCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhc
Q 022163 248 GVQLQPKPETRVQKPADDRL---FTWAAVGLTIAILVLLLKKFMKSN 291 (301)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 291 (301)
+-..++.|+..+++=+--|. +-|+.+|+.+++++.|++.|+++.
T Consensus 320 ~fryl~~p~~P~~rd~Pkr~lIlvl~~llG~~lg~~~vL~r~~~r~~ 366 (377)
T PRK10381 320 PFKYQLSPSLPVKKDGPGKALIVILAALIGGMLACGFVLLRHAMRSR 366 (377)
T ss_pred eEEecCCCcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777776444554 457889999999999999999875
No 55
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=27.69 E-value=1.2e+02 Score=31.56 Aligned_cols=14 Identities=7% Similarity=0.225 Sum_probs=9.6
Q ss_pred cHHHHHHHHHHhCC
Q 022163 109 SVRTALVALIAFMP 122 (301)
Q Consensus 109 tI~~IL~~I~~lL~ 122 (301)
++.+||..+..++.
T Consensus 218 gLhHv~tElKeii~ 231 (574)
T PF07462_consen 218 GLHHVFTELKEIIK 231 (574)
T ss_pred hHHHHHHHHHHHHh
Confidence 46777777777773
No 56
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.03 E-value=81 Score=27.36 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCCC-----CCCCeeEEec
Q 022163 57 GGIYHGRIQLPAEYP-----FKPPSFMLLT 81 (301)
Q Consensus 57 GG~F~~~I~fP~dYP-----~~PP~V~FlT 81 (301)
.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999998874
No 57
>PF03021 CM2: Influenza C virus M2 protein; InterPro: IPR004267 This family represents the matrix protein, M2, of Influenza C virus. The M1 protein is the product of a spliced mRNA (see IPR004271 from INTERPRO). Small quantities of the unspliced mRNA are found in the cell additionally encoding the M2 protein.
Probab=26.92 E-value=39 Score=27.61 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=22.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHh
Q 022163 264 DDRLFTWAAVGLTIAILVLLLKKFMKS 290 (301)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (301)
..-.+|+|.+||.|--|..||-|.+-.
T Consensus 49 qgymltlaslglgiitmlyllvkiiie 75 (139)
T PF03021_consen 49 QGYMLTLASLGLGIITMLYLLVKIIIE 75 (139)
T ss_pred CceeeEHHhccchHHHHHHHHHHHHHH
Confidence 356899999999999998888887654
No 58
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=24.78 E-value=32 Score=24.98 Aligned_cols=11 Identities=55% Similarity=1.247 Sum_probs=7.3
Q ss_pred hcCCceeeccC
Q 022163 290 SNGHGTVFMDG 300 (301)
Q Consensus 290 ~~~~~~~~~~~ 300 (301)
=+|||-+|.||
T Consensus 19 CSGHGr~flDg 29 (56)
T PF04863_consen 19 CSGHGRAFLDG 29 (56)
T ss_dssp -TTSEE--TTS
T ss_pred cCCCCeeeecc
Confidence 48999999997
No 59
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=24.51 E-value=99 Score=25.70 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Q 022163 268 FTWAAVGLTIAILVLLLKKFMKSN 291 (301)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~ 291 (301)
|.-.++||.+||+++++-.+++..
T Consensus 103 l~tT~~GL~vai~~~~~~~~l~~~ 126 (139)
T PF01618_consen 103 LITTAYGLVVAIPALPFYNYLKRR 126 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999998888753
No 60
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=24.45 E-value=1.1e+02 Score=20.16 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=16.1
Q ss_pred cchhHHHHHHHHHHHHHHHH-HHHHH
Q 022163 265 DRLFTWAAVGLTIAILVLLL-KKFMK 289 (301)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~~~~~ 289 (301)
|--|...|..|.+++|+|++ --|+.
T Consensus 4 D~qL~~lan~lG~~~~~LIVlYH~v~ 29 (35)
T PF10215_consen 4 DVQLYTLANFLGVAAMVLIVLYHFVE 29 (35)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44456667888888887754 34443
No 61
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=24.44 E-value=70 Score=24.18 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 022163 272 AVGLTIAILVLLLKKF 287 (301)
Q Consensus 272 ~~~~~~~~~~~~~~~~ 287 (301)
.+||.++|.+.++|.|
T Consensus 67 ~~Gl~lgi~~~~~re~ 82 (82)
T PF13807_consen 67 FLGLILGIGLAFLREM 82 (82)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 3677788888887754
No 62
>PF06686 SpoIIIAC: Stage III sporulation protein AC/AD protein family
Probab=23.39 E-value=1e+02 Score=21.88 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 022163 267 LFTWAAVGLTIAILVLLLKKF 287 (301)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~ 287 (301)
+|..+++|++.++...++|+-
T Consensus 2 I~ki~gigii~~~l~~vlk~~ 22 (58)
T PF06686_consen 2 ILKIVGIGIIAAFLALVLKQA 22 (58)
T ss_pred hHHHHHHHHHHHHHHHHHHHc
Confidence 467788888888888888763
No 63
>PHA01735 hypothetical protein
Probab=23.01 E-value=57 Score=24.87 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=14.8
Q ss_pred HHHHHhcCCceeeccCC
Q 022163 285 KKFMKSNGHGTVFMDGS 301 (301)
Q Consensus 285 ~~~~~~~~~~~~~~~~~ 301 (301)
.+|||+|+.-||-.||+
T Consensus 39 ~d~Lk~NdItgv~~~gs 55 (76)
T PHA01735 39 CDWLKSNDITGVAVDGS 55 (76)
T ss_pred HHHHHHCCCceeeCCCC
Confidence 48999999999988885
No 64
>COG4333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.95 E-value=59 Score=28.23 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCceeecc
Q 022163 283 LLKKFMKSNGHGTVFMD 299 (301)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ 299 (301)
.+-.|-+|-|||||||-
T Consensus 60 rci~fA~swgyGgvy~~ 76 (167)
T COG4333 60 RCISFAKSWGYGGVYMA 76 (167)
T ss_pred HHHHHHhhcccCcEEee
Confidence 34578899999999984
No 65
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=22.95 E-value=96 Score=30.11 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=28.8
Q ss_pred ccCCCccccccCCCCcc---hhHHHHHHHHHHHHHHHHHHHHHhc
Q 022163 250 QLQPKPETRVQKPADDR---LFTWAAVGLTIAILVLLLKKFMKSN 291 (301)
Q Consensus 250 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (301)
..++.|...+.+-+--| ++.|+.+|+.+++++.|+|.|++..
T Consensus 278 ~yl~~p~~Pv~~d~Pkr~lIlil~~~lG~~lg~~~vL~r~~~r~~ 322 (325)
T PRK15471 278 RYVMKPTLPVRRDSPKKAITLVLAVLLGGMIGAGIVLGRNALRNY 322 (325)
T ss_pred EEecCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555555533344 5567888999999888899998764
No 66
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=22.92 E-value=1.3e+02 Score=29.76 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=34.0
Q ss_pred CCCccccCCCccccccCCCCcchh---HHHHHHHHHHHHHHHHHHHHHhc
Q 022163 245 NASGVQLQPKPETRVQKPADDRLF---TWAAVGLTIAILVLLLKKFMKSN 291 (301)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 291 (301)
.-+....+++|...+.+-+--|-+ -|+.||+.++..+.|++.|+|++
T Consensus 295 ~~~~yRYl~~P~~Pvkrd~PrrA~ilil~~LiGgm~g~g~vL~R~~lk~~ 344 (347)
T COG3765 295 RFSTYRYLQKPTLPVKRDSPRRAIILILGALIGGMLGAGVVLLRNALKKY 344 (347)
T ss_pred ceeEEEecCCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556667887777664444544 46778888999999999999986
No 67
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=22.85 E-value=1e+02 Score=27.79 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 022163 268 FTWAAVGLTIAILVLLLKKFMKS 290 (301)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~ 290 (301)
|.--|+||.+||.+++.-.|+..
T Consensus 167 LitTA~GL~VAIPAli~yn~f~~ 189 (211)
T TIGR02797 167 LLATAIGLVAAIPAVVIYNVFAR 189 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467899999999999888764
No 68
>smart00340 HALZ homeobox associated leucin zipper.
Probab=22.65 E-value=73 Score=21.96 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhC
Q 022163 12 AVKRILQEVKEMQSN 26 (301)
Q Consensus 12 a~kRL~kEl~~L~~~ 26 (301)
-.+||++|+.+|+.-
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 368999999999864
No 69
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=22.27 E-value=42 Score=24.46 Aligned_cols=25 Identities=28% Similarity=0.679 Sum_probs=16.3
Q ss_pred CCCccccHHHHHHHHHHhCCCCCCC
Q 022163 103 HWQPSWSVRTALVALIAFMPTNPNG 127 (301)
Q Consensus 103 ~WsP~~tI~~IL~~I~~lL~~nP~~ 127 (301)
+|+|.++|++++.........||++
T Consensus 37 gW~p~~~L~~~i~~~w~W~~~np~G 61 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQKKNPNG 61 (62)
T ss_dssp ----SSSHHHHHHHHHHHHHHSTTT
T ss_pred CCCcCCCHHHHHHHHHHHHHHCcCC
Confidence 5999999999998877766456653
No 70
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.15 E-value=80 Score=29.02 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=19.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 022163 264 DDRLFTWAAVGLTIAILVLLLK 285 (301)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~ 285 (301)
.|+++-|++++||+-||.|+++
T Consensus 189 ~Dk~iF~~G~i~~~v~~yl~~~ 210 (213)
T KOG3251|consen 189 EDKIIFYGGVILTLVIMYLFYR 210 (213)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999988887664
No 71
>PF10617 DUF2474: Protein of unknown function (DUF2474); InterPro: IPR018895 This family of short proteins has no known function.
Probab=21.46 E-value=2.1e+02 Score=19.41 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc
Q 022163 269 TWAAVGLTIAILVLLLKKFMKSNGHG 294 (301)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (301)
-|++-=+++++|+.++|-+|+.-|..
T Consensus 14 iW~~SV~aL~~va~~~Rllm~aAGl~ 39 (40)
T PF10617_consen 14 IWAASVLALGVVAMLFRLLMTAAGLK 39 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46666688999999999999988864
No 72
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=21.38 E-value=2.7e+02 Score=21.41 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=23.9
Q ss_pred HHHHHHhCCCCCCCchhhhHhhHHhHHHHHHHHHHHHhhhC
Q 022163 114 LVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFG 154 (301)
Q Consensus 114 L~~I~~lL~~nP~~~l~A~~~~~edr~~f~~kare~~~kya 154 (301)
+..+.-.|.+.|+|. .|+.+|.+-.+...+..+++.++|+
T Consensus 15 ~~dl~LyLDTHP~d~-~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 15 VVDLNLYLDTHPDDQ-EALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred HHHHHHHhcCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555565677754 3556666666666666666666665
No 73
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=20.76 E-value=1e+02 Score=17.76 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=13.2
Q ss_pred chhHHHHHHHHHHHHHHH
Q 022163 266 RLFTWAAVGLTIAILVLL 283 (301)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~ 283 (301)
|.||+.=+=.+++|+.++
T Consensus 1 ~GFTLiE~~v~l~i~~i~ 18 (20)
T PF07963_consen 1 KGFTLIELLVALAIIAIL 18 (20)
T ss_pred CceeHHHHHHHHHHHHHH
Confidence 568887777777777765
No 74
>PF06474 MLTD_N: MltD lipid attachment motif; InterPro: IPR010511 This entry represents the MltD lipid attachment domain. It is a short N-terminal domain found in membrane-bound lytic murein transglycosylase D (Mltd).
Probab=20.63 E-value=1.5e+02 Score=19.48 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=16.9
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHH
Q 022163 258 RVQKPADDRLFTWAAVGLTIAILVLL 283 (301)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (301)
..++|.|-|++|-++=--.++++.+|
T Consensus 4 ~~r~~~~~~altr~~q~~~l~l~a~l 29 (34)
T PF06474_consen 4 DFRQPSHSDALTRLAQISVLALGALL 29 (34)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHH
Confidence 36788899999876644444444443
No 75
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=20.56 E-value=1.2e+02 Score=25.96 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=22.1
Q ss_pred CcchhHHHHHHHHHHHH---HHHHHHHHHhcCCc
Q 022163 264 DDRLFTWAAVGLTIAIL---VLLLKKFMKSNGHG 294 (301)
Q Consensus 264 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 294 (301)
-|-.++..+.++.||++ ++|+|||.++-+.+
T Consensus 22 ~~~~~~~gsL~~iL~lil~~~wl~kr~~~~~~~~ 55 (137)
T COG3190 22 LELAQMFGSLILILALILFLAWLVKRLGRAPLFK 55 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 46677788888877765 56789999655443
No 76
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=20.50 E-value=98 Score=23.39 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 022163 270 WAAVGLTIAILVLLLK 285 (301)
Q Consensus 270 ~~~~~~~~~~~~~~~~ 285 (301)
++-+|.|+||++|++-
T Consensus 5 ~iLi~ICVaii~lIlY 20 (68)
T PF05961_consen 5 FILIIICVAIIGLILY 20 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5668999999999874
No 77
>PHA03049 IMV membrane protein; Provisional
Probab=20.39 E-value=1e+02 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 022163 270 WAAVGLTIAILVLLLK 285 (301)
Q Consensus 270 ~~~~~~~~~~~~~~~~ 285 (301)
++-++.|+||++|++-
T Consensus 5 ~~l~iICVaIi~lIvY 20 (68)
T PHA03049 5 IILVIICVVIIGLIVY 20 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4568899999999874
No 78
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=20.29 E-value=34 Score=30.09 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022163 270 WAAVGLTIAILVLLLKKF 287 (301)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~ 287 (301)
+.|||+..+|+.+++||.
T Consensus 139 LlaIG~igGIIivvvRKm 156 (162)
T PF05808_consen 139 LLAIGFIGGIIIVVVRKM 156 (162)
T ss_dssp ------------------
T ss_pred HHHHHHHhheeeEEeehh
Confidence 456777778888888885
No 79
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=20.05 E-value=1.2e+02 Score=27.15 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred CCeEEEEEEcCCCCCC-----CCCeeEEe
Q 022163 57 GGIYHGRIQLPAEYPF-----KPPSFMLL 80 (301)
Q Consensus 57 GG~F~~~I~fP~dYP~-----~PP~V~Fl 80 (301)
.|.|.|+-.+|--||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999998 88888776
Done!