BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022164
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSD 60
MVKET YYDVLGV P AS+ E+KKAY A K HPDKNP+ A+ F+ + +AY+VLSD
Sbjct: 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSD 60
Query: 61 PAQRQAYDAYG 71
+RQ YD G
Sbjct: 61 EKKRQIYDQGG 71
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQ 65
+YY +LGV AS+ EIKKAYY A+K HPD N +DP A + F L EAY+VLSD +R+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 66 AYDAYGKSGIST 77
YDAYG SG S+
Sbjct: 68 QYDAYG-SGPSS 78
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSD 60
MVKET YYDVLGV P A++ E+KKAY A K HPDKNPN+ + F+ + +AY+VLSD
Sbjct: 2 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSD 58
Query: 61 PAQRQAYDAYG 71
+R+ YD G
Sbjct: 59 AKKRELYDKGG 69
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSD 60
MVKET+ YD+LGVSP+A+E E+KK Y A K HPDK D + F+ + EA+++L+D
Sbjct: 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILND 60
Query: 61 PAQRQAYDAYG 71
P +R+ YD YG
Sbjct: 61 PQKREIYDQYG 71
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQ 65
+YY++LGVS TA E EI+KAY A K HPD+N D A F+ + EAY+VL+D +R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 66 AYDAYGKSGIS----TEAIIDPAAIFAMLFGSELFEDYIG 101
AYD YG + A F+ +FG ++F D G
Sbjct: 64 AYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 102
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQ 65
+YY++LGVS TA E EI+KAY A K HPD+N D A F+ + EAY+VL+D +R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 66 AYDAYGKSGIS----TEAIIDPAAIFAMLFGSELFEDYIG 101
AYD YG + A F+ +FG ++F D G
Sbjct: 64 AYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 102
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 7 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQA 66
+Y +LGVS TAS EI++A+ A K+HPDKNPN+P A +F + AY+VL D R+
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 67 YDAYGKSGI 75
YD YG+ G+
Sbjct: 64 YDKYGEKGL 72
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQ 63
+ +Y +LGVS TAS EI++A+ A K+HPDKNPN+P A +F + AY+VL D
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 64 RQAYDAYGKSGI 75
R+ YD YG+ G+
Sbjct: 80 RKKYDKYGEKGL 91
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQ 65
+YY++LGVS TA E EI+KAY A K HPD+N D A F+ + EAY+VL+D +R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 66 AYDAYG 71
AYD YG
Sbjct: 64 AYDQYG 69
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQ 65
+YY LG++ AS+ EIK+AY +A + HPDKN +P A + F+ + EAY VLSDP +R+
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 66 AYDAYGKSGI 75
+D YG+ G+
Sbjct: 63 IFDRYGEEGL 72
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 7 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQ 65
YY++L V +AS +IKKAY KA + HPDKNP N A + F+ + EAY+VLSD +R+
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 66 AYDAYGKSGIS 76
YD YG+ G++
Sbjct: 64 IYDRYGREGLT 74
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQ 65
+YY++LGVS AS+ ++KKAY A K HPDKN + P A + F+ +G AY VLS+P +R+
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 66 AYDAYGKSGIST 77
YD +G SG S+
Sbjct: 67 QYDQFG-SGPSS 77
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 7 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQA 66
YYD+LGV +ASE +IKKA++ A K HPDKN P A F+ + EAY+ LSD +R+
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKN-KSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 67 YDAYGKSGIST 77
YD G S ++
Sbjct: 68 YDTLGHSAFTS 78
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 8 YDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAY 67
Y VLGVS TAS+A+IKKAY AR+ HPDKN DP A F + +AY++LS+ +R Y
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPGAEDRFIQISKAYEILSNEEKRTNY 78
Query: 68 DAYGKSGIST 77
D YG SG S+
Sbjct: 79 DHYG-SGPSS 87
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 8 YDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAY 67
Y VLG+ A+ +IKK+Y A K HPDKNP++P AA F+ + A+ +L+D +R Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 68 DAYGKSGI 75
D YG G+
Sbjct: 80 DKYGSLGL 87
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 7 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQ 65
YY+VLGV +AS +IKKAY A + HPDKNP N A + F+++ EAY+VLSD +R
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70
Query: 66 AYDAYG 71
YD G
Sbjct: 71 LYDRAG 76
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQR 64
+YY+VL V AS IKKAY A K HPDKNP N A + F+ + EAY+VLSD +R
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 65 QAYDAYGKSGIST 77
YD YG SG S+
Sbjct: 70 DIYDRYG-SGPSS 81
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 57.4 bits (137), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQR 64
T YD+LGV TA++A+IK AYY + HPD+N AA+ F + +AY VL R
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76
Query: 65 QAYD 68
+ YD
Sbjct: 77 RKYD 80
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQ 65
+YY +LG +S +I + ++A + HPDK+P +P A + FQ L +A ++L++ R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 66 AYDAYGKSGIS 76
YD + +S +S
Sbjct: 81 RYDHWRRSQMS 91
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQ 65
+YY ++GV PT IK AY ARK HPD + +P A F+ + EA++VLSD +R
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRRA 64
Query: 66 AYD 68
YD
Sbjct: 65 EYD 67
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPD-KNPNDPLAAQNFQVLGEAYQVLSDPAQR 64
+YY +LGV PT IK AY ARK HPD ND A F+ L EA++VL D +R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEND--AEAKFKDLAEAWEVLKDEQRR 86
Query: 65 QAYD 68
YD
Sbjct: 87 AEYD 90
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPN---DPLAAQNFQVLGEAYQVLSDPA 62
+YY +LGV A + EI KAY A + HPD N A + F + A +VLSDP
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 63 QRQAYD 68
R+ +D
Sbjct: 443 MRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPN---DPLAAQNFQVLGEAYQVLSDPA 62
+YY +LGV A + EI KAY A + HPD N A + F + A +VLSDP
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 63 QRQAYD 68
R+ +D
Sbjct: 443 XRKKFD 448
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 8 YDVLGVSPTA-SEAEIKKAYYIKARKVHPDKNPNDP---LAAQNFQVLGEAYQVLSDPAQ 63
YDVL V+ + ++ KAY ARK HPD+ N LA + F+V+ AY+ L D
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 64 RQAYDAY 70
+ YD Y
Sbjct: 78 KTNYDYY 84
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAA------QNFQVLGEAYQVLS 59
++Y +LG P+A+ +++K+ Y HPDK D A Q F + +A+++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 60 DPAQRQAYD 68
+ ++ YD
Sbjct: 71 NEETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAA------QNFQVLGEAYQVLS 59
++Y +LG P+A+ +++K+ Y HPDK D A Q F + +A+++L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 60 DPAQRQAYDAYGKSGIST 77
+ ++ YD +SG S+
Sbjct: 77 NEETKKKYDLQ-RSGPSS 93
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 35.0 bits (79), Expect = 0.057, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 8 YDVLGVSPTASEAEIKKAYYIKARKVHPDK 37
+D+LGV P AS E+ KAY A +HPDK
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 133 QKEREEKLADILRGRLNQYVQGNKEDFINYAEAEVSRLSNAAYGVDMLNTIGYIY 187
+K+R +++ ++ + ++ N EDF++Y + +++R+ VD N + IY
Sbjct: 534 KKDRHYEMSSMVETQALNKLKDNPEDFVDYNKKQITRIYPKGTRVDSSNYVPQIY 588
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 133 QKEREEKLADILRGRLNQYVQGNKEDFINYAEAEVSRLSNAAYGVDMLNTIGYIY 187
+K+R +++ ++ + ++ N EDF++Y + +++R+ VD N + IY
Sbjct: 534 KKDRHYEMSSMVETQALNKLKDNPEDFVDYNKKQLTRIYPKGTRVDSSNYVPQIY 588
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 9 DVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAY 55
D+ + T E E+ + +HPD PN PLAA F+++ + Y
Sbjct: 285 DIPPIKGTTPEGEVVE--------IHPD--PNGPLAALAFKIMADPY 321
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 9 DVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAY 55
D+ + T E E+ + +HPD PN PLAA F+++ + Y
Sbjct: 285 DIPPIKGTTPEGEVVE--------IHPD--PNGPLAALAFKIMADPY 321
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 9 DVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAY 55
D+ + T E E+ + +HPD PN PLAA F+++ + Y
Sbjct: 285 DIPPIKGTTPEGEVVE--------IHPD--PNGPLAALAFKIMADPY 321
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 9 DVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAY 55
D+ + T E E+ + +HPD PN PLAA F+++ + Y
Sbjct: 285 DIPPIKGTTPEGEVVE--------IHPD--PNGPLAALAFKIMADPY 321
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 9 DVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAY 55
D+ + T E E+ + +HPD PN PLAA F+++ + Y
Sbjct: 285 DIPPIKGTTPEGEVVE--------IHPD--PNGPLAALAFKIMADPY 321
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 9 DVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAY 55
D+ + T E E+ + +HPD PN PLAA F+++ + Y
Sbjct: 285 DIPPIKGTTPEGEVVE--------IHPD--PNGPLAALAFKIMADPY 321
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 9 DVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAY 55
D+ + T E E+ + +HPD PN PLAA F+++ + Y
Sbjct: 285 DIPPIKGTTPEGEVVE--------IHPD--PNGPLAALAFKIMADPY 321
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 9 DVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAY 55
D+ + T E E+ + +HPD PN PLAA F+++ + Y
Sbjct: 285 DIPPIKGTTPEGEVVE--------IHPD--PNGPLAALAFKIMADPY 321
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 9 DVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAY 55
D+ + T E E+ + +HPD PN PLAA F+++ + Y
Sbjct: 252 DIPPIKGTTPEGEVVE--------IHPD--PNGPLAALAFKIMADPY 288
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 66 AYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIGQLAMASVASLDIFTEGEEFD 121
+DAY SG + P I + F + YIG +++ S L+I +G EF+
Sbjct: 394 TWDAYSGSGHQKRKALKPTVILILAFFACWLPYYIG-ISIDSFILLEIIKQGCEFE 448
>pdb|4F3V|A Chain A, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
From Esx-1 Secretion System Of Mycobacterium
Tuberculosis
pdb|4F3V|B Chain B, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
From Esx-1 Secretion System Of Mycobacterium
Tuberculosis
Length = 282
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 93 SELFEDYIGQLAMASVASLDIFTEGEEFD 121
+ LFE + L M+ SLD+FTE +D
Sbjct: 8 ASLFESAVSMLPMSEARSLDLFTEITNYD 36
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 3 KETEYYDVLGVSPTASE----AEIKKAYYIKARKVH--PDKN 38
K +++Y+ +GV PT++E YY+K K+ PD N
Sbjct: 450 KISDFYNTIGVHPTSAEELCSMRTPSYYYVKGEKMEKLPDSN 491
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 3 KETEYYDVLGVSPTASE----AEIKKAYYIKARKVH--PDKN 38
K +++Y+ +GV PT++E YY+K K+ PD N
Sbjct: 453 KISDFYNTIGVHPTSAEELCSMRTPSYYYVKGEKMEKLPDSN 494
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,048,793
Number of Sequences: 62578
Number of extensions: 304930
Number of successful extensions: 848
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 50
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)