Query 022164
Match_columns 301
No_of_seqs 307 out of 2349
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:31:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00341 Ring-infected erythro 100.0 4.8E-60 1E-64 483.7 30.0 286 1-295 569-875 (1136)
2 KOG0691 Molecular chaperone (D 100.0 3.3E-50 7.1E-55 373.4 22.8 283 1-295 1-284 (296)
3 PF14308 DnaJ-X: X-domain of D 100.0 5.5E-42 1.2E-46 305.7 19.3 164 132-295 2-165 (204)
4 PTZ00475 RESA-like protein; Pr 100.0 8.6E-30 1.9E-34 232.4 20.4 215 79-295 2-260 (282)
5 COG0484 DnaJ DnaJ-class molecu 99.9 6.7E-28 1.5E-32 229.5 10.0 93 2-94 1-102 (371)
6 KOG0713 Molecular chaperone (D 99.9 1.7E-26 3.7E-31 215.2 8.1 75 3-77 14-88 (336)
7 KOG0712 Molecular chaperone (D 99.9 2E-23 4.3E-28 196.6 7.9 88 2-92 1-88 (337)
8 PRK14288 chaperone protein Dna 99.9 3.2E-23 6.9E-28 200.1 9.0 73 4-76 2-74 (369)
9 PRK14286 chaperone protein Dna 99.9 1.8E-22 3.8E-27 195.1 9.7 73 3-75 2-74 (372)
10 PRK14296 chaperone protein Dna 99.9 1.5E-22 3.3E-27 195.5 8.9 73 3-76 2-74 (372)
11 PRK14277 chaperone protein Dna 99.9 8.7E-22 1.9E-26 191.2 10.0 76 1-76 1-76 (386)
12 PRK14298 chaperone protein Dna 99.9 1E-21 2.2E-26 190.2 9.1 75 1-76 1-75 (377)
13 PRK14287 chaperone protein Dna 99.9 1.5E-21 3.2E-26 188.6 9.9 90 3-93 2-98 (371)
14 PRK14282 chaperone protein Dna 99.9 1.2E-21 2.5E-26 189.2 9.0 73 3-75 2-75 (369)
15 PRK14285 chaperone protein Dna 99.9 1.4E-21 3E-26 188.5 9.5 73 4-76 2-74 (365)
16 PTZ00037 DnaJ_C chaperone prot 99.9 1.1E-21 2.4E-26 191.9 8.5 87 3-93 26-113 (421)
17 PRK14276 chaperone protein Dna 99.8 1.5E-21 3.3E-26 189.1 9.2 73 3-76 2-74 (380)
18 PRK14297 chaperone protein Dna 99.8 1.7E-21 3.7E-26 188.8 9.1 73 3-75 2-74 (380)
19 PRK14279 chaperone protein Dna 99.8 1.9E-21 4.1E-26 189.1 8.9 69 4-72 8-76 (392)
20 PRK14294 chaperone protein Dna 99.8 2.8E-21 6.2E-26 186.4 9.7 74 3-76 2-75 (366)
21 PRK14283 chaperone protein Dna 99.8 2E-21 4.2E-26 188.3 7.5 75 1-76 1-75 (378)
22 PRK14301 chaperone protein Dna 99.8 3.6E-21 7.8E-26 186.1 8.7 73 4-76 3-75 (373)
23 PRK14299 chaperone protein Dna 99.8 8.4E-21 1.8E-25 177.9 10.2 70 4-74 3-72 (291)
24 PRK14278 chaperone protein Dna 99.8 7.2E-21 1.6E-25 184.3 9.6 69 4-73 2-70 (378)
25 PRK14284 chaperone protein Dna 99.8 5.5E-21 1.2E-25 185.8 8.9 71 5-75 1-71 (391)
26 PRK14280 chaperone protein Dna 99.8 7.7E-21 1.7E-25 184.0 9.4 73 3-76 2-74 (376)
27 PRK10767 chaperone protein Dna 99.8 1.1E-20 2.4E-25 182.5 9.7 74 3-76 2-75 (371)
28 PRK14295 chaperone protein Dna 99.8 9E-21 1.9E-25 184.2 8.6 74 3-76 7-84 (389)
29 PHA03102 Small T antigen; Revi 99.8 1.4E-20 3E-25 160.1 7.2 97 5-106 5-103 (153)
30 PRK14291 chaperone protein Dna 99.8 1.8E-20 3.8E-25 181.8 8.7 71 4-75 2-72 (382)
31 PRK14290 chaperone protein Dna 99.8 2.6E-20 5.7E-25 179.6 9.6 89 5-93 3-102 (365)
32 PRK14289 chaperone protein Dna 99.8 3.9E-20 8.4E-25 179.7 9.9 76 1-76 1-76 (386)
33 PRK14281 chaperone protein Dna 99.8 3.8E-20 8.3E-25 180.3 9.4 73 4-76 2-74 (397)
34 KOG0716 Molecular chaperone (D 99.8 2.5E-20 5.5E-25 169.2 5.8 73 3-75 29-101 (279)
35 TIGR02349 DnaJ_bact chaperone 99.8 8.3E-20 1.8E-24 175.4 8.7 70 6-76 1-70 (354)
36 KOG0718 Molecular chaperone (D 99.8 1.9E-19 4E-24 173.4 10.5 103 4-140 8-114 (546)
37 PRK14292 chaperone protein Dna 99.8 1.3E-19 2.9E-24 175.1 9.3 88 5-93 2-97 (371)
38 PRK14300 chaperone protein Dna 99.8 3.5E-19 7.6E-24 172.2 8.5 71 5-76 3-73 (372)
39 PRK14293 chaperone protein Dna 99.8 4.9E-19 1.1E-23 171.3 9.2 72 4-76 2-73 (374)
40 KOG0715 Molecular chaperone (D 99.8 4.5E-19 9.8E-24 165.8 8.3 87 5-93 43-129 (288)
41 PRK10266 curved DNA-binding pr 99.8 1E-18 2.3E-23 164.8 9.5 69 3-72 2-70 (306)
42 PF00226 DnaJ: DnaJ domain; I 99.8 1.1E-18 2.4E-23 127.2 6.3 63 6-68 1-64 (64)
43 KOG0719 Molecular chaperone (D 99.7 1.2E-17 2.5E-22 148.9 12.0 71 4-74 13-85 (264)
44 KOG0717 Molecular chaperone (D 99.7 3.1E-18 6.8E-23 164.8 7.6 70 3-72 6-76 (508)
45 TIGR03835 termin_org_DnaJ term 99.7 1.1E-16 2.4E-21 162.7 9.6 71 5-76 2-72 (871)
46 smart00271 DnaJ DnaJ molecular 99.7 1.1E-16 2.4E-21 114.9 6.3 58 5-62 1-59 (60)
47 COG2214 CbpA DnaJ-class molecu 99.7 1.1E-16 2.3E-21 140.3 7.4 71 1-71 2-73 (237)
48 KOG0721 Molecular chaperone (D 99.7 2E-16 4.2E-21 139.8 7.7 74 3-76 97-170 (230)
49 cd06257 DnaJ DnaJ domain or J- 99.6 5E-16 1.1E-20 109.4 6.6 55 6-60 1-55 (55)
50 PRK00294 hscB co-chaperone Hsc 99.6 2.5E-14 5.3E-19 124.6 10.6 68 2-69 1-75 (173)
51 PRK05014 hscB co-chaperone Hsc 99.5 2.8E-14 6.1E-19 124.1 9.6 65 5-69 1-72 (171)
52 PRK03578 hscB co-chaperone Hsc 99.5 7.6E-14 1.7E-18 121.9 10.0 71 3-73 4-83 (176)
53 PRK01356 hscB co-chaperone Hsc 99.5 5.2E-14 1.1E-18 121.9 7.7 66 5-70 2-72 (166)
54 KOG0550 Molecular chaperone (D 99.5 2.9E-14 6.3E-19 136.5 5.4 90 1-90 369-461 (486)
55 KOG0714 Molecular chaperone (D 99.5 4.8E-14 1E-18 129.2 6.3 73 4-76 2-75 (306)
56 KOG0624 dsRNA-activated protei 99.5 2.8E-14 6.1E-19 134.3 4.0 68 3-70 392-462 (504)
57 KOG0722 Molecular chaperone (D 99.4 1.1E-13 2.4E-18 125.0 3.7 68 4-72 32-99 (329)
58 KOG0720 Molecular chaperone (D 99.4 4.4E-13 9.4E-18 129.6 6.0 68 4-72 234-301 (490)
59 PTZ00100 DnaJ chaperone protei 99.3 5.1E-12 1.1E-16 102.7 5.4 53 3-59 63-115 (116)
60 PHA02624 large T antigen; Prov 99.3 9E-12 1.9E-16 125.7 7.5 59 5-67 11-71 (647)
61 PRK09430 djlA Dna-J like membr 99.2 7.4E-12 1.6E-16 116.2 5.4 56 5-60 200-262 (267)
62 COG5407 SEC63 Preprotein trans 99.2 4.1E-11 8.9E-16 115.8 6.1 72 5-76 98-174 (610)
63 PRK01773 hscB co-chaperone Hsc 99.2 8.9E-11 1.9E-15 102.3 7.6 65 5-69 2-73 (173)
64 KOG1150 Predicted molecular ch 99.0 3.2E-10 6.8E-15 99.5 6.1 64 4-67 52-116 (250)
65 TIGR00714 hscB Fe-S protein as 99.0 8.1E-10 1.7E-14 94.9 7.0 54 17-70 3-61 (157)
66 COG5269 ZUO1 Ribosome-associat 98.8 4E-09 8.8E-14 96.4 6.1 85 4-88 42-132 (379)
67 KOG1789 Endocytosis protein RM 98.3 5.5E-07 1.2E-11 94.7 5.3 56 1-59 1277-1336(2235)
68 KOG0568 Molecular chaperone (D 98.2 1.2E-06 2.7E-11 78.8 4.0 55 5-60 47-102 (342)
69 KOG0723 Molecular chaperone (D 98.1 6.4E-06 1.4E-10 65.6 5.1 49 9-61 60-108 (112)
70 KOG3192 Mitochondrial J-type c 97.5 0.00028 6E-09 60.1 6.2 85 1-85 4-97 (168)
71 COG1076 DjlA DnaJ-domain-conta 96.3 0.004 8.6E-08 54.3 3.5 54 5-58 113-173 (174)
72 COG1076 DjlA DnaJ-domain-conta 95.9 0.0064 1.4E-07 53.0 3.2 65 6-70 2-73 (174)
73 KOG0431 Auxilin-like protein a 95.6 0.013 2.9E-07 58.4 4.2 27 15-41 398-424 (453)
74 PF03656 Pam16: Pam16; InterP 93.0 0.2 4.3E-06 41.7 5.1 51 8-62 61-111 (127)
75 PF03207 OspD: Borrelia outer 82.3 8.6 0.00019 33.5 8.1 27 263-289 187-219 (254)
76 PF13446 RPT: A repeated domai 78.0 4.7 0.0001 28.7 4.4 26 6-31 6-31 (62)
77 KOG0724 Zuotin and related mol 78.0 2.2 4.7E-05 40.7 3.4 55 16-70 3-61 (335)
78 PF14687 DUF4460: Domain of un 68.7 11 0.00024 30.5 4.9 47 15-61 4-54 (112)
79 PF11833 DUF3353: Protein of u 62.3 16 0.00035 32.5 5.1 40 14-61 1-40 (194)
80 COG5552 Uncharacterized conser 48.2 59 0.0013 24.6 5.2 34 6-39 4-37 (88)
81 PF07739 TipAS: TipAS antibiot 46.8 40 0.00088 26.4 4.7 52 12-72 51-104 (118)
82 KOG3442 Uncharacterized conser 34.9 48 0.001 27.5 3.3 32 8-39 62-93 (132)
83 PF11460 DUF3007: Protein of u 31.4 2.8E+02 0.006 22.3 7.2 22 235-259 80-101 (104)
84 cd01390 HMGB-UBF_HMG-box HMGB- 25.3 1.4E+02 0.003 20.5 4.1 40 26-70 15-54 (66)
85 cd00084 HMG-box High Mobility 25.0 1.5E+02 0.0032 20.2 4.1 42 23-69 12-53 (66)
86 cd01388 SOX-TCF_HMG-box SOX-TC 24.7 1.5E+02 0.0033 21.3 4.3 41 24-69 14-54 (72)
87 PF07709 SRR: Seven Residue Re 23.9 66 0.0014 16.1 1.5 13 47-59 2-14 (14)
88 PF10041 DUF2277: Uncharacteri 23.4 3.2E+02 0.0068 20.8 5.7 32 9-40 7-38 (78)
89 PF12434 Malate_DH: Malate deh 20.6 1.2E+02 0.0026 18.5 2.3 18 18-35 9-26 (28)
90 PF04719 TAFII28: hTAFII28-lik 20.4 1.6E+02 0.0036 22.9 3.8 36 248-294 8-43 (90)
No 1
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=100.00 E-value=4.8e-60 Score=483.66 Aligned_cols=286 Identities=19% Similarity=0.326 Sum_probs=249.3
Q ss_pred CCCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCCCC
Q 022164 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI 80 (301)
Q Consensus 1 m~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~~~ 80 (301)
|+++++||++|||+++||..+||+|||++|++||||+||++ .|.++|+.|++||+|||||.+|+.||+||..+++.+++
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~~~~ 647 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKGVNF 647 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCCCCc
Confidence 67899999999999999999999999999999999999864 68889999999999999999999999999999998999
Q ss_pred CChHHHHHhhhcchhHHHHhhhHHHhhhhhcccccc--cc--ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCh
Q 022164 81 IDPAAIFAMLFGSELFEDYIGQLAMASVASLDIFTE--GE--EFDAKKLQDKMKVVQKEREEKLADILRGRLNQYVQGNK 156 (301)
Q Consensus 81 ~dp~~~f~~~fg~~~f~~~~g~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~R~~~La~~L~~~l~~~v~~~~ 156 (301)
+||..+| ++||++.|.+|+|++.+++++....... .. ....+.+++.++..|++|+.+||..|++||++||+|+.
T Consensus 648 iDP~~Ff-mlFgse~F~dYiG~l~iatl~k~~fe~~~s~~d~~~~~e~l~e~m~~~QkeRE~kLA~~LkdRL~~YVdgd~ 726 (1136)
T PTZ00341 648 IHPSIFY-LLASLEKFADFTGSPQIVTLLKFFFEKKLSMNDLDNKSEHLLKFMEQYQKEREAHISENLINILQPCIAGDR 726 (1136)
T ss_pred cCHHHHH-HHhhhHHHHHhcCCHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 9999766 7899999999999999988765432111 11 11235678889999999999999999999999999886
Q ss_pred HHHHHHHHHHHHHhhhcchhhhHHhhHHHHHHHHHHHHhhhhccccCchhHHHHhhhhhhhHHHHHHHHHHHH-HHHHHH
Q 022164 157 EDFINYAEAEVSRLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFIAEWFRNKGHFIKSQVTAATGAI-ALIQLQ 235 (301)
Q Consensus 157 ~~f~~~~~~e~~~L~~~sfG~~~L~~IG~~Y~~~A~~~l~~~~~~~g~~~~~~~~r~k~~~~k~~~~~~~~a~-~~~~~~ 235 (301)
.|...+..||+.|+.+|||..|||+|||||.++|..|||+.++ |+++++.+++.++.+++++++.+++++ +++..+
T Consensus 727 -~w~~~~e~Ei~~L~~sSFG~~IL~tIGwiY~n~A~~fL~~~k~--g~~kl~~r~k~n~~~v~~~~n~lss~lkda~~t~ 803 (1136)
T PTZ00341 727 -KWDVPIIDKIEELKGSPFDIAIIDSIGWIFKHVAKSHLKKPKK--AAKKLEQRSKANKEELANENNKLMNILKEYFGNN 803 (1136)
T ss_pred -HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 5999999999999999999999999999999999999999875 778899999999999999999998888 777777
Q ss_pred HHHHHHhhhc----------------CCCCHHHHHHHHHHhHHHHHHHHHhHhHHHHHHHHHHHHHHhccccchhh
Q 022164 236 EDMKKQLSAE----------------GNYTEEELEEYMQSHKKLMIDSLWKLNVADIEATLSRVCQMVVLLVSYYL 295 (301)
Q Consensus 236 ~~~~k~~~~~----------------~~~~~ee~~~~~~~~~~~~L~a~W~~~~~dIe~tlr~Vc~~VL~D~~v~~ 295 (301)
+++.+..... ..++++ + +..+++++|.++|+++++||++|||.||++||.|++|..
T Consensus 804 eq~nki~~n~En~t~~~~nen~~k~i~~l~~e---e-e~~ilgkiL~~iw~isl~DIE~TVR~VCekVL~Dk~Vd~ 875 (1136)
T PTZ00341 804 EQINSITYNFENINLNEDNENGSKKILDLNHK---D-QKEIFEEIISYIVDISLSDIENTAKNAAEQILSDEGLDE 875 (1136)
T ss_pred HHHHHhhhhhcccccccccccccccccccCHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 7776543211 012233 2 666789999999999999999999999999999999854
No 2
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-50 Score=373.39 Aligned_cols=283 Identities=43% Similarity=0.598 Sum_probs=251.0
Q ss_pred CCCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCCCC
Q 022164 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI 80 (301)
Q Consensus 1 m~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~~~ 80 (301)
|++++|||++|||+++||..+|++|||+.+++|||||||+||.|.++|+.+.+||+||+||..|..||.+|..+....+.
T Consensus 1 M~~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~~~ 80 (296)
T KOG0691|consen 1 MVKDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQGR 80 (296)
T ss_pred CcccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccchhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998777788
Q ss_pred CChHHHHHhhhcchhHHHHhhhHHHhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccccCChHHHH
Q 022164 81 IDPAAIFAMLFGSELFEDYIGQLAMASVASLDIFTEGEEFDAKKLQDKMKVVQKEREEKLADILRGRLNQYVQGNKEDFI 160 (301)
Q Consensus 81 ~dp~~~f~~~fg~~~f~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~La~~L~~~l~~~v~~~~~~f~ 160 (301)
.++.++|...||++.|++|+|.++..... .+...+. +.++++....+.+|+++|++.|+++|+.|+++. + +
T Consensus 81 ~d~~~~~r~~f~~dl~~~~~~~~a~~~~~-~e~~~e~-----~~~~~k~~~~~~er~~~l~~~~~~~l~~~~~~~-~--~ 151 (296)
T KOG0691|consen 81 EDQADGFRKKFGSDLFERERGALALLKES-EESELER-----ERLQEKFRAVQRERVDKLVEILREKLSEVVESV-E--E 151 (296)
T ss_pred hhHHHHHHHHhhhhhhhhHHHHHhHHhhh-hhhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-h--h
Confidence 99999999999999999999999887665 1111111 145567888899999999999999999999977 3 9
Q ss_pred HHHHHHHHHhhhcchhhhHHhhHHHHHHH-HHHHHhhhhccccCchhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022164 161 NYAEAEVSRLSNAAYGVDMLNTIGYIYAR-QAAKELGKKAIYLGVPFIAEWFRNKGHFIKSQVTAATGAIALIQLQEDMK 239 (301)
Q Consensus 161 ~~~~~e~~~L~~~sfG~~~L~~IG~~Y~~-~A~~~l~~~~~~~g~~~~~~~~r~k~~~~k~~~~~~~~a~~~~~~~~~~~ 239 (301)
+++..|+..|..++||.+++|++|.+|.+ .+..++ ...+++|+++++.+.+.+|+.++.+|+++.+++..+..+.++.
T Consensus 152 ~~~~~e~~~l~~e~~~~e~~~~~g~~y~~~~~~~~~-~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~ 230 (296)
T KOG0691|consen 152 RKLATEALQLQRERFGEELLHTIGRTYSRTKALKPI-KFRTSPGVSKLSEGSRAKGGALRAMWNLAAGAVALYGGQDEME 230 (296)
T ss_pred hhhhHHHHHHHHhhhhHHHHHhhcccchhhHhhhcc-ccccccCcchhhhcccccchhHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996 555555 4445899999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHhHHHHHHHHHhHhHHHHHHHHHHHHHHhccccchhh
Q 022164 240 KQLSAEGNYTEEELEEYMQSHKKLMIDSLWKLNVADIEATLSRVCQMVVLLVSYYL 295 (301)
Q Consensus 240 k~~~~~~~~~~ee~~~~~~~~~~~~L~a~W~~~~~dIe~tlr~Vc~~VL~D~~v~~ 295 (301)
+.....+...++. .+.....++++++++|+++++||++||+.||++| +|++|.+
T Consensus 231 ~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~s~~dies~l~~~~~~~-~d~~v~~ 284 (296)
T KOG0691|consen 231 KLLEALGEALEKR-AEYASAKTGKSLDTLWHGSSFDIESTLIRVCQKI-KDPSVPL 284 (296)
T ss_pred hhhcchHHHhhhc-hHHHHHhhcchhhhhhHhHHHHHHHHHHHHHHHh-cChHHHH
Confidence 8765433333322 6677778999999999999999999999999999 9999986
No 3
>PF14308 DnaJ-X: X-domain of DnaJ-containing
Probab=100.00 E-value=5.5e-42 Score=305.68 Aligned_cols=164 Identities=36% Similarity=0.568 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHhhhcchhhhHHhhHHHHHHHHHHHHhhhhccccCchhHHHHh
Q 022164 132 VQKEREEKLADILRGRLNQYVQGNKEDFINYAEAEVSRLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFIAEWF 211 (301)
Q Consensus 132 ~~~~R~~~La~~L~~~l~~~v~~~~~~f~~~~~~e~~~L~~~sfG~~~L~~IG~~Y~~~A~~~l~~~~~~~g~~~~~~~~ 211 (301)
.|++|+.+||.+|++||++||+|+.+.|.+.|+.||++|+.+|||.+|||+|||||.++|+.|||+..+|+|+|++++++
T Consensus 2 ~q~~R~~~La~~L~~rL~~yv~~~~~~f~~~~~~Ea~~L~~~sFg~~iL~~IG~vY~~~A~~~l~~~~~~lG~~~~~~~~ 81 (204)
T PF14308_consen 2 EQKEREVELAEKLRDRLQPYVDGDKEEFKEKMEEEAEDLKEESFGVEILHSIGWVYENKAKQFLGKKKTFLGIGGFFARM 81 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhHHHHHHHHHhHhHHHHHHHHHHHHHHhcccc
Q 022164 212 RNKGHFIKSQVTAATGAIALIQLQEDMKKQLSAEGNYTEEELEEYMQSHKKLMIDSLWKLNVADIEATLSRVCQMVVLLV 291 (301)
Q Consensus 212 r~k~~~~k~~~~~~~~a~~~~~~~~~~~k~~~~~~~~~~ee~~~~~~~~~~~~L~a~W~~~~~dIe~tlr~Vc~~VL~D~ 291 (301)
+++++.++++++++++|++++++++++.+.....++.++++++++++..++++|.++|+++++||++|||+||++||+|+
T Consensus 82 k~k~~~~k~~~~~~~sa~~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~~~L~~~w~~~~~DIe~Tlr~Vc~~VL~D~ 161 (204)
T PF14308_consen 82 KEKGRSVKNQFSTAKSALDAQSTMEELQKAEEKNGEENEEERAELEEEILGKMLDAIWKINKFDIESTLREVCDKVLYDK 161 (204)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999877666789999999999999999999999999999999999999999999
Q ss_pred chhh
Q 022164 292 SYYL 295 (301)
Q Consensus 292 ~v~~ 295 (301)
+|..
T Consensus 162 ~V~~ 165 (204)
T PF14308_consen 162 GVDK 165 (204)
T ss_pred CCCH
Confidence 9963
No 4
>PTZ00475 RESA-like protein; Provisional
Probab=99.97 E-value=8.6e-30 Score=232.35 Aligned_cols=215 Identities=22% Similarity=0.299 Sum_probs=150.7
Q ss_pred CCCChHHHHHhhhcchhHHHHhhhHHHhhhhhccc----cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 022164 79 AIIDPAAIFAMLFGSELFEDYIGQLAMASVASLDI----FTEGEEFDAKKLQDKMKVVQKEREEKLADILRGRLNQYVQG 154 (301)
Q Consensus 79 ~~~dp~~~f~~~fg~~~f~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~R~~~La~~L~~~l~~~v~~ 154 (301)
.++||..+|.++||++.|.+|||++.++++++... +.+....+.+.+.+.|+..|++|+.+||..|++||+|||+|
T Consensus 2 ~iIDP~~fF~mlFgSe~l~~YIG~L~ma~~v~l~fe~~~~~edi~~~~~~i~~~M~~~QkeRE~kLAl~LrdrLq~YVdg 81 (282)
T PTZ00475 2 IIIVPFIFFNLIFTSDMMYEYIENTKVPIFVKLFFGKSIFIEDIFYYVGMIMKEMMEGQNIREEEVAELLKDRLDLYIDN 81 (282)
T ss_pred ccccHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998876432 11222335678889999999999999999999999999987
Q ss_pred ChHHHHHHHHHHHHHhhhcchhhhHHhhHHHHHHHHHHHHhhhhccccCchhHHHH-----hhhhhhhH-HH-----HHH
Q 022164 155 NKEDFINYAEAEVSRLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFIAEW-----FRNKGHFI-KS-----QVT 223 (301)
Q Consensus 155 ~~~~f~~~~~~e~~~L~~~sfG~~~L~~IG~~Y~~~A~~~l~~~~~~~g~~~~~~~-----~r~k~~~~-k~-----~~~ 223 (301)
.+.|+.+++.||..|+.+|||..|||+|||+|.+.|+.|||..+.. |++.-... -|...+.. .+ ..+
T Consensus 82 -~~ew~~~~e~Eak~L~~ssFg~~iLesIGwiY~Nva~~ylge~~~~-~l~~k~~~~~~~~~r~~rn~~~l~~~~~~~~~ 159 (282)
T PTZ00475 82 -EDEWEKLMENEISMLLKSSFSNFILESIGWTYENVSNIFLEEKANS-GINKKDIYLKEANERMIRNSIVLRQCKSRFIS 159 (282)
T ss_pred -hHHHHHHHHHHHHHHHhCcccHHHHHHhHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999988765 66533211 11111111 11 111
Q ss_pred HHHHHHHHHHHHHHHHHHhh---h-----cCC-----------------CCHHHH----HHHHHHhHHHHHHHHHhHhHH
Q 022164 224 AATGAIALIQLQEDMKKQLS---A-----EGN-----------------YTEEEL----EEYMQSHKKLMIDSLWKLNVA 274 (301)
Q Consensus 224 ~~~~a~~~~~~~~~~~k~~~---~-----~~~-----------------~~~ee~----~~~~~~~~~~~L~a~W~~~~~ 274 (301)
..++-......-..+-++.+ . ++. .-.+.. .+-.....+.+|..+.++...
T Consensus 160 ~~~~~~~~~~~~n~~~~~~~~~~ss~~~~~d~~nn~~~~~~~~~~~~~n~~~~ni~~l~~~ek~kil~~il~~i~~i~l~ 239 (282)
T PTZ00475 160 IITNYYPFKEQNNPFIKQAQYVSSSNYVLDDIINNIDYSIDNIHRAIDNLYYEHILNLLEEEKNEILEEILRNILKIILC 239 (282)
T ss_pred HHHhhccchhhhhhHHHHhhhcccccccccccccchhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111100000000000 0 000 000111 122233467789999999999
Q ss_pred HHHHHHHHHHHHhccccchhh
Q 022164 275 DIEATLSRVCQMVVLLVSYYL 295 (301)
Q Consensus 275 dIe~tlr~Vc~~VL~D~~v~~ 295 (301)
|||.|+|.||++||.|++|..
T Consensus 240 DIE~Tvk~~a~~vl~d~~vd~ 260 (282)
T PTZ00475 240 DVETTVRRSAQKVLQNAEGDT 260 (282)
T ss_pred HHHHHHHHHHHHHhhccCccH
Confidence 999999999999999999964
No 5
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.7e-28 Score=229.51 Aligned_cols=93 Identities=47% Similarity=0.805 Sum_probs=80.7
Q ss_pred CCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCCC--
Q 022164 2 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA-- 79 (301)
Q Consensus 2 ~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~~-- 79 (301)
+..+|||+||||+++||.+|||+|||+||++||||+||++++|+++|++|++||+|||||++|+.||+||..+....+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 357899999999999999999999999999999999999999999999999999999999999999999998764222
Q ss_pred ------CC-ChHHHHHhhhcch
Q 022164 80 ------II-DPAAIFAMLFGSE 94 (301)
Q Consensus 80 ------~~-dp~~~f~~~fg~~ 94 (301)
+. |..++|..+||+.
T Consensus 81 g~g~~~fgg~~~DIF~~~FgGg 102 (371)
T COG0484 81 GFGFGGFGGDFGDIFEDFFGGG 102 (371)
T ss_pred CCCcCCCCCCHHHHHHHhhcCC
Confidence 11 4566677777543
No 6
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.7e-26 Score=215.23 Aligned_cols=75 Identities=49% Similarity=0.882 Sum_probs=72.5
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST 77 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~ 77 (301)
.++|||+||||+.+||..|||+||||||++|||||||+||.|.+.|+.|+.||+|||||++|+.||.+|.+++..
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~ 88 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD 88 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence 579999999999999999999999999999999999999999999999999999999999999999999988764
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2e-23 Score=196.58 Aligned_cols=88 Identities=51% Similarity=0.812 Sum_probs=76.1
Q ss_pred CCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCCCCC
Q 022164 2 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAII 81 (301)
Q Consensus 2 ~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~~~~ 81 (301)
+.++.||+||||+++||.+|||+|||+||++|||||||+ +.++|++|+.||+|||||++|..||+||.+++..++..
T Consensus 1 ~~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~ 77 (337)
T KOG0712|consen 1 VKNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGG 77 (337)
T ss_pred CcccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCC
Confidence 468999999999999999999999999999999999986 78999999999999999999999999999887654332
Q ss_pred ChHHHHHhhhc
Q 022164 82 DPAAIFAMLFG 92 (301)
Q Consensus 82 dp~~~f~~~fg 92 (301)
....-|+++|+
T Consensus 78 ~g~~~f~~~F~ 88 (337)
T KOG0712|consen 78 GGFGGFSQFFG 88 (337)
T ss_pred CCCccHHHhcc
Confidence 21111777776
No 8
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=3.2e-23 Score=200.09 Aligned_cols=73 Identities=44% Similarity=0.754 Sum_probs=69.5
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+||..++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~ 74 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLN 74 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccc
Confidence 5899999999999999999999999999999999998888999999999999999999999999999987654
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.8e-22 Score=195.15 Aligned_cols=73 Identities=49% Similarity=0.834 Sum_probs=69.5
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 75 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~ 75 (301)
.+.|||++|||+++||.+|||+|||++|++||||+|+++++|+++|++|++||+||+||.+|+.||+||..++
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 4689999999999999999999999999999999999888899999999999999999999999999998754
No 10
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.5e-22 Score=195.49 Aligned_cols=73 Identities=44% Similarity=0.702 Sum_probs=68.5
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
..+|||++|||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||+|||||.+|+.||+||..++.
T Consensus 2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~ 74 (372)
T PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFD 74 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhc
Confidence 4689999999999999999999999999999999997 578999999999999999999999999999986543
No 11
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=8.7e-22 Score=191.16 Aligned_cols=76 Identities=47% Similarity=0.840 Sum_probs=72.1
Q ss_pred CCCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 1 m~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
|+...|||+||||+++||.++||+|||++|++||||+|++++.|+++|++|++||+||+||.+|..||+||..++.
T Consensus 1 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 76 (386)
T PRK14277 1 MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD 76 (386)
T ss_pred CCCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccc
Confidence 7888999999999999999999999999999999999998888999999999999999999999999999986543
No 12
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1e-21 Score=190.16 Aligned_cols=75 Identities=48% Similarity=0.805 Sum_probs=70.3
Q ss_pred CCCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 1 m~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
|...+|||+||||+++||.+|||+|||++|++||||+|+ ++.++++|++|++||+||+||.+|+.||+||..++.
T Consensus 1 ~~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (377)
T PRK14298 1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGID 75 (377)
T ss_pred CCCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccc
Confidence 667899999999999999999999999999999999997 578899999999999999999999999999987543
No 13
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.5e-21 Score=188.65 Aligned_cols=90 Identities=42% Similarity=0.694 Sum_probs=76.2
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCC----
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---- 78 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~---- 78 (301)
...|||++|||+++||.+|||+|||++|++||||+|+ +++|+++|++|++||+||+||.+|+.||+||..+....
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~ 80 (371)
T PRK14287 2 SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGG 80 (371)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCC
Confidence 3579999999999999999999999999999999997 57899999999999999999999999999998754321
Q ss_pred ---CCCChHHHHHhhhcc
Q 022164 79 ---AIIDPAAIFAMLFGS 93 (301)
Q Consensus 79 ---~~~dp~~~f~~~fg~ 93 (301)
++.+..++|..+||+
T Consensus 81 ~~~~f~~~~d~f~~~fgg 98 (371)
T PRK14287 81 GAGDFGGFSDIFDMFFGG 98 (371)
T ss_pred CCccccchHHHHHhhhcc
Confidence 112334667777763
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.2e-21 Score=189.24 Aligned_cols=73 Identities=44% Similarity=0.809 Sum_probs=68.3
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPND-PLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 75 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~-~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~ 75 (301)
..+|||+||||+++||.+|||+|||+||++||||+|+++ +.|+++|++|++||+||+||.+|+.||+||..+.
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 468999999999999999999999999999999999864 6789999999999999999999999999998654
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.4e-21 Score=188.48 Aligned_cols=73 Identities=44% Similarity=0.684 Sum_probs=69.1
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
..|||++|||+++||.+|||+|||+||++||||+|++++.|.++|++|++||+||+||.+|..||+||..++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~ 74 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFE 74 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhc
Confidence 4799999999999999999999999999999999998888999999999999999999999999999987543
No 16
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.85 E-value=1.1e-21 Score=191.91 Aligned_cols=87 Identities=40% Similarity=0.738 Sum_probs=75.9
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCC-CCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE-AII 81 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~-~~~ 81 (301)
.+.|||+||||+++||.+|||+|||+||++||||+|+ + .++|++|++||+|||||.+|+.||+||..++... +..
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~ 101 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-D---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPA 101 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-h---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCc
Confidence 4689999999999999999999999999999999996 3 3799999999999999999999999998765422 234
Q ss_pred ChHHHHHhhhcc
Q 022164 82 DPAAIFAMLFGS 93 (301)
Q Consensus 82 dp~~~f~~~fg~ 93 (301)
|+.++|..+||+
T Consensus 102 d~~d~f~~~Fgg 113 (421)
T PTZ00037 102 DASDLFDLIFGG 113 (421)
T ss_pred chhhhHHHhhcc
Confidence 667788888874
No 17
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.5e-21 Score=189.08 Aligned_cols=73 Identities=52% Similarity=0.839 Sum_probs=68.4
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
.+.|||+||||+++||.+|||+|||++|++||||+|+ ++.|+++|+.|++||+||+||.+|+.||+||..++.
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~ 74 (380)
T PRK14276 2 NNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN 74 (380)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence 4689999999999999999999999999999999998 578899999999999999999999999999987643
No 18
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.7e-21 Score=188.78 Aligned_cols=73 Identities=45% Similarity=0.761 Sum_probs=69.4
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 75 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~ 75 (301)
...|||++|||+++||.++||+|||++|++||||+|+++++|+++|++|++||+||+||.+|+.||+||..++
T Consensus 2 ~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 2 ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 4589999999999999999999999999999999999888899999999999999999999999999998764
No 19
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.9e-21 Score=189.12 Aligned_cols=69 Identities=52% Similarity=0.833 Sum_probs=66.9
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGK 72 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~ 72 (301)
++|||+||||+++||.+|||+|||++|++||||+|++++.|.++|++|++||+|||||++|+.||+||.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 579999999999999999999999999999999999888999999999999999999999999999985
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.8e-21 Score=186.39 Aligned_cols=74 Identities=51% Similarity=0.844 Sum_probs=70.1
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
...|||+||||+++||.+|||+|||++|++||||+|+++++++++|+.|++||+||+||.+|+.||+||..++.
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~ 75 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLS 75 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccccc
Confidence 46899999999999999999999999999999999998888999999999999999999999999999987654
No 21
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2e-21 Score=188.26 Aligned_cols=75 Identities=47% Similarity=0.784 Sum_probs=71.1
Q ss_pred CCCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 1 m~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
||.+.|||++|||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||+||..++.
T Consensus 1 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~ 75 (378)
T PRK14283 1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD 75 (378)
T ss_pred CCCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccc
Confidence 888999999999999999999999999999999999998 478999999999999999999999999999987643
No 22
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.6e-21 Score=186.07 Aligned_cols=73 Identities=51% Similarity=0.869 Sum_probs=69.5
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
..|||++|||+++||.++||+|||++|++||||+|+++++|+++|++|++||+||+||.+|+.||+||..++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~ 75 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVN 75 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccc
Confidence 5899999999999999999999999999999999998888999999999999999999999999999987654
No 23
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=8.4e-21 Score=177.88 Aligned_cols=70 Identities=50% Similarity=0.826 Sum_probs=66.7
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 74 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~ 74 (301)
..|||+||||+++||.++||+|||++|++||||+|+ ++.++++|+.|++||+||+||.+|..||+||..+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 579999999999999999999999999999999997 6789999999999999999999999999999863
No 24
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=7.2e-21 Score=184.29 Aligned_cols=69 Identities=49% Similarity=0.782 Sum_probs=66.1
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 73 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~ 73 (301)
.+|||+||||+++||.++||+|||++|++||||+|+ +++|+++|+.|++||+||+||.+|+.||+||..
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 379999999999999999999999999999999998 688999999999999999999999999999975
No 25
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=5.5e-21 Score=185.85 Aligned_cols=71 Identities=56% Similarity=0.869 Sum_probs=67.9
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCC
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 75 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~ 75 (301)
.|||+||||+++||+++||+|||++|++||||+|++++.|+++|+.|++||+||+||.+|+.||+||..++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 48999999999999999999999999999999999888899999999999999999999999999998654
No 26
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=7.7e-21 Score=183.97 Aligned_cols=73 Identities=47% Similarity=0.770 Sum_probs=68.1
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
...|||+||||+++||.++||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||+||..++.
T Consensus 2 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 74 (376)
T PRK14280 2 AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN 74 (376)
T ss_pred CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence 3479999999999999999999999999999999998 577999999999999999999999999999987643
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.1e-20 Score=182.53 Aligned_cols=74 Identities=54% Similarity=0.868 Sum_probs=69.7
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
...|||+||||+++||.++||+|||++|++||||+|++++.|+++|++|++||++|+||.+|..||+||..++.
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 75 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFE 75 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccc
Confidence 45899999999999999999999999999999999998888999999999999999999999999999987653
No 28
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=9e-21 Score=184.23 Aligned_cols=74 Identities=50% Similarity=0.811 Sum_probs=69.5
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHh----cCCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDA----YGKSGIS 76 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~----~g~~~~~ 76 (301)
-..|||+||||+++||.++||+|||+||++||||+|++++.|+++|++|++||+||+||.+|+.||+ ||..++.
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~ 84 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFR 84 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccc
Confidence 3679999999999999999999999999999999999888899999999999999999999999999 9987653
No 29
>PHA03102 Small T antigen; Reviewed
Probab=99.82 E-value=1.4e-20 Score=160.14 Aligned_cols=97 Identities=22% Similarity=0.313 Sum_probs=87.0
Q ss_pred CccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCCCCCC
Q 022164 5 TEYYDVLGVSPTA--SEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIID 82 (301)
Q Consensus 5 ~~~Y~iLgv~~~a--s~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~~~~d 82 (301)
..+|++|||+++| |..+||+|||++++++|||++++ .++|+.|++||++|+|+..|..||.+|......... .
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~~-~ 79 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEED-V 79 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCcccccccc-c
Confidence 4689999999999 99999999999999999999863 369999999999999999999999999987655543 3
Q ss_pred hHHHHHhhhcchhHHHHhhhHHHh
Q 022164 83 PAAIFAMLFGSELFEDYIGQLAMA 106 (301)
Q Consensus 83 p~~~f~~~fg~~~f~~~~g~~~~~ 106 (301)
|.++|.++||++.|.+|+|++...
T Consensus 80 ~~~~f~~~fg~~~~~~~~~~~~~c 103 (153)
T PHA03102 80 PSGYVGATFGDRVNALYCKDWDTC 103 (153)
T ss_pred HHHHhhhhcCCcchhhHhcchHHH
Confidence 999999999999999999987544
No 30
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.8e-20 Score=181.82 Aligned_cols=71 Identities=52% Similarity=0.880 Sum_probs=67.1
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 75 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~ 75 (301)
..|||++|||+++||.++||+|||++|++||||+|++ +.++++|+.|++||+|||||.+|+.||+||..++
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 4799999999999999999999999999999999984 7889999999999999999999999999998654
No 31
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.6e-20 Score=179.62 Aligned_cols=89 Identities=40% Similarity=0.712 Sum_probs=76.5
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCC--C--
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDP-LAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE--A-- 79 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~-~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~--~-- 79 (301)
.|||+||||+++||.+|||+|||+|+++||||+|++++ .|+++|+.|++||+||+||.+|..||+||..++... +
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 79999999999999999999999999999999998765 789999999999999999999999999998654311 0
Q ss_pred ------CCChHHHHHhhhcc
Q 022164 80 ------IIDPAAIFAMLFGS 93 (301)
Q Consensus 80 ------~~dp~~~f~~~fg~ 93 (301)
+.|+.++|..+||+
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~ 102 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGG 102 (365)
T ss_pred ccccccccchhHHHHHHhcC
Confidence 23556677777764
No 32
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.9e-20 Score=179.67 Aligned_cols=76 Identities=53% Similarity=0.868 Sum_probs=71.8
Q ss_pred CCCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 1 m~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
|+...|||++|||+++||.+|||+|||++|++||||+|+++++|.++|+.|++||++|+||.+|+.||+||..++.
T Consensus 1 ~~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~ 76 (386)
T PRK14289 1 MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVG 76 (386)
T ss_pred CCccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 6778999999999999999999999999999999999998889999999999999999999999999999986543
No 33
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.8e-20 Score=180.27 Aligned_cols=73 Identities=48% Similarity=0.838 Sum_probs=69.0
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
..|||+||||+++||.++||+|||++|++||||+|++++.|+++|+.|++||+||+||.+|..||+||..++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~ 74 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG 74 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence 4799999999999999999999999999999999998888999999999999999999999999999987543
No 34
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.5e-20 Score=169.21 Aligned_cols=73 Identities=48% Similarity=0.810 Sum_probs=69.4
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 75 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~ 75 (301)
.+.++|+|||++++|+.++|||+||+|+++||||+++++|++.++|+.||+||+||+||.+|..||++|..++
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l 101 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL 101 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999987653
No 35
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.80 E-value=8.3e-20 Score=175.42 Aligned_cols=70 Identities=53% Similarity=0.908 Sum_probs=66.2
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 6 ~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
|||++|||+++||.++||+|||++|++||||+|+ ++.+.++|+.|++||+||+||.+|..||+||..+..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 70 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhccccccc
Confidence 7999999999999999999999999999999997 677899999999999999999999999999987643
No 36
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.9e-19 Score=173.37 Aligned_cols=103 Identities=40% Similarity=0.662 Sum_probs=86.4
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDP----LAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 79 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~----~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~~ 79 (301)
+.+||.+|||+++||.+||++|||++++.|||||+. || .|++.|+.|.+||+|||||.+|+.||.||.+|+...+
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~-dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~g 86 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHT-DPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEG 86 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccC-ChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccccC
Confidence 468999999999999999999999999999999997 33 3788999999999999999999999999999876432
Q ss_pred CCChHHHHHhhhcchhHHHHhhhHHHhhhhhccccccccccchHHHHHHHHHHHHHHHHHH
Q 022164 80 IIDPAAIFAMLFGSELFEDYIGQLAMASVASLDIFTEGEEFDAKKLQDKMKVVQKEREEKL 140 (301)
Q Consensus 80 ~~dp~~~f~~~fg~~~f~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~L 140 (301)
- + .- .....|+++++++++.|++|++.+
T Consensus 87 w----------------E---------------l~--~r~~tpeEIreE~Erl~r~~de~~ 114 (546)
T KOG0718|consen 87 W----------------E---------------LG--FRGKTPEEIREEYERLQRERDERR 114 (546)
T ss_pred c----------------e---------------ee--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 0 00 011268899999999999988754
No 37
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.3e-19 Score=175.07 Aligned_cols=88 Identities=47% Similarity=0.708 Sum_probs=76.1
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCC-------
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST------- 77 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~------- 77 (301)
.|||++|||+++||.++||+|||+++++||||+|+ ++.++++|+.|++||+||+||.+|+.||+||..+...
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~ 80 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPF 80 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCccc
Confidence 48999999999999999999999999999999997 6789999999999999999999999999999864211
Q ss_pred CC-CCChHHHHHhhhcc
Q 022164 78 EA-IIDPAAIFAMLFGS 93 (301)
Q Consensus 78 ~~-~~dp~~~f~~~fg~ 93 (301)
.+ ..||.++|..+||+
T Consensus 81 ~~~~~d~~d~f~~~fg~ 97 (371)
T PRK14292 81 GGMGFDPMDIFEQLFGG 97 (371)
T ss_pred CccCCChHHHHHHhhCC
Confidence 01 13567788888875
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.5e-19 Score=172.22 Aligned_cols=71 Identities=42% Similarity=0.740 Sum_probs=66.9
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
.|||+||||+++||.+|||+|||+++++||||+|+ ++.++++|++|++||++|+||.+|..||+||..++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 73 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQ 73 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccc
Confidence 79999999999999999999999999999999997 567889999999999999999999999999987643
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=4.9e-19 Score=171.33 Aligned_cols=72 Identities=47% Similarity=0.854 Sum_probs=67.5
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
..|||+||||+++||.++||+|||+++++||||+|+ ++.++++|+.|++||+||+||.+|+.||.||..++.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~ 73 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVS 73 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccc
Confidence 479999999999999999999999999999999997 577899999999999999999999999999987653
No 40
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.5e-19 Score=165.78 Aligned_cols=87 Identities=43% Similarity=0.678 Sum_probs=77.6
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCCCCCChH
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPA 84 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~~~~dp~ 84 (301)
.|||+||||+++|+..|||+||++||++||||.|++ +.|.++|++|.+||+||+|+++|..||.+|..+ .....+||.
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~-~~~~~g~~~ 120 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ-HGEFGGNPF 120 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc-cccccCCcc
Confidence 389999999999999999999999999999999984 599999999999999999999999999999875 122334788
Q ss_pred HHHHhhhcc
Q 022164 85 AIFAMLFGS 93 (301)
Q Consensus 85 ~~f~~~fg~ 93 (301)
++|..+|++
T Consensus 121 ~~~~~~~~~ 129 (288)
T KOG0715|consen 121 DVFLEFFGG 129 (288)
T ss_pred chHHHhhcc
Confidence 888888886
No 41
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.77 E-value=1e-18 Score=164.83 Aligned_cols=69 Identities=41% Similarity=0.656 Sum_probs=65.0
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGK 72 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~ 72 (301)
...|||++|||+++||.++||+|||++|++||||+|+ ++.+.++|++|++||++|+||.+|..||.+|.
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 2 ELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 3479999999999999999999999999999999997 56799999999999999999999999999985
No 42
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.76 E-value=1.1e-18 Score=127.20 Aligned_cols=63 Identities=48% Similarity=0.837 Sum_probs=60.0
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHcCChhHHHHHH
Q 022164 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDP-LAAQNFQVLGEAYQVLSDPAQRQAYD 68 (301)
Q Consensus 6 ~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~-~a~~~f~~i~~AY~vLsdp~~R~~YD 68 (301)
|||+||||+++++.++||++|+++++.+|||++++++ .+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999998665 68899999999999999999999998
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.2e-17 Score=148.89 Aligned_cols=71 Identities=44% Similarity=0.694 Sum_probs=65.5
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP--NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 74 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~--~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~ 74 (301)
.+|+|+||||.++|+..+|++|||++++.+|||+++ ...++.++|+.++.||+||||.++|+.||+-|.-.
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 359999999999999999999999999999999995 44568899999999999999999999999999754
No 44
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.1e-18 Score=164.85 Aligned_cols=70 Identities=49% Similarity=0.746 Sum_probs=65.1
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHcCChhHHHHHHhcCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPND-PLAAQNFQVLGEAYQVLSDPAQRQAYDAYGK 72 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~-~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~ 72 (301)
..+.||+||||.++|++.+||++||+||++|||||||+. .+|.++|+.|+.||+|||||+.|+.||.+-.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 467899999999999999999999999999999999855 4688999999999999999999999998765
No 45
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.67 E-value=1.1e-16 Score=162.67 Aligned_cols=71 Identities=48% Similarity=0.809 Sum_probs=67.1
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
.|||++|||+++|+..+||+|||++++++|||++++ +.+..+|+.|++||++|+||.+|..||.||..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 699999999999999999999999999999999975 78889999999999999999999999999987654
No 46
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.67 E-value=1.1e-16 Score=114.86 Aligned_cols=58 Identities=55% Similarity=0.831 Sum_probs=54.7
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHcCChh
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPN-DPLAAQNFQVLGEAYQVLSDPA 62 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~-~~~a~~~f~~i~~AY~vLsdp~ 62 (301)
+|||++|||+++++.++||++|+++++.+|||++++ .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999986 5778899999999999999985
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-16 Score=140.27 Aligned_cols=71 Identities=52% Similarity=0.879 Sum_probs=67.3
Q ss_pred CCCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHHHHHcCChhHHHHHHhcC
Q 022164 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPL-AAQNFQVLGEAYQVLSDPAQRQAYDAYG 71 (301)
Q Consensus 1 m~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~-a~~~f~~i~~AY~vLsdp~~R~~YD~~g 71 (301)
|....+||+||||+++|+..+|++|||++++++|||+|++++. +.+.|+.|++||++|+||..|..||.++
T Consensus 2 ~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 2 MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred chhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 4567899999999999999999999999999999999998885 9999999999999999999999999983
No 48
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2e-16 Score=139.81 Aligned_cols=74 Identities=38% Similarity=0.651 Sum_probs=67.4
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
..-|+|+||||+|++|..|||+|||+|++++||||+|+..+.++.|..|++||+.|+|+..|+.|..||....+
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGp 170 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGP 170 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCc
Confidence 35689999999999999999999999999999999986566778899999999999999999999999986543
No 49
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.64 E-value=5e-16 Score=109.37 Aligned_cols=55 Identities=62% Similarity=0.999 Sum_probs=52.0
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCC
Q 022164 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSD 60 (301)
Q Consensus 6 ~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsd 60 (301)
|||++|||+++++.++||++||++++++|||++++.+.+.+.|+.|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999997557788999999999999987
No 50
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.55 E-value=2.5e-14 Score=124.61 Aligned_cols=68 Identities=28% Similarity=0.458 Sum_probs=61.1
Q ss_pred CCCCccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHcCChhHHHHHHh
Q 022164 2 VKETEYYDVLGVSPT--ASEAEIKKAYYIKARKVHPDKNPNDPL-----AAQNFQVLGEAYQVLSDPAQRQAYDA 69 (301)
Q Consensus 2 ~~~~~~Y~iLgv~~~--as~~eIkkayr~la~~~HPDkn~~~~~-----a~~~f~~i~~AY~vLsdp~~R~~YD~ 69 (301)
+...|||++||+++. .+..+|+++||++++++|||++++.+. +.+.|..||+||++|+||.+|..|+-
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 467899999999996 668999999999999999999876553 56689999999999999999999994
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.54 E-value=2.8e-14 Score=124.14 Aligned_cols=65 Identities=28% Similarity=0.489 Sum_probs=58.1
Q ss_pred CccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHcCChhHHHHHHh
Q 022164 5 TEYYDVLGVSPT--ASEAEIKKAYYIKARKVHPDKNPNDPL-----AAQNFQVLGEAYQVLSDPAQRQAYDA 69 (301)
Q Consensus 5 ~~~Y~iLgv~~~--as~~eIkkayr~la~~~HPDkn~~~~~-----a~~~f~~i~~AY~vLsdp~~R~~YD~ 69 (301)
.|||++|||+++ ++..+|+++||++++++|||++++.+. +.+.|..||+||++|+||.+|..|+-
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 489999999995 788999999999999999999875443 56689999999999999999999984
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.51 E-value=7.6e-14 Score=121.90 Aligned_cols=71 Identities=30% Similarity=0.413 Sum_probs=61.2
Q ss_pred CCCccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHH-----HHHHHHHHHHHHcCChhHHHHHHh--cCCC
Q 022164 3 KETEYYDVLGVSPT--ASEAEIKKAYYIKARKVHPDKNPNDPLAA-----QNFQVLGEAYQVLSDPAQRQAYDA--YGKS 73 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~--as~~eIkkayr~la~~~HPDkn~~~~~a~-----~~f~~i~~AY~vLsdp~~R~~YD~--~g~~ 73 (301)
...|||++|||+++ +++.+|+++||++++++|||++++.+.++ +.+..||+||++|+||.+|..|+- .|..
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~ 83 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVD 83 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCC
Confidence 46899999999995 68999999999999999999998666544 346899999999999999999984 5553
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=5.2e-14 Score=121.86 Aligned_cols=66 Identities=26% Similarity=0.393 Sum_probs=57.7
Q ss_pred CccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHHHHHcCChhHHHHHHhc
Q 022164 5 TEYYDVLGVSPT--ASEAEIKKAYYIKARKVHPDKNPNDPL---AAQNFQVLGEAYQVLSDPAQRQAYDAY 70 (301)
Q Consensus 5 ~~~Y~iLgv~~~--as~~eIkkayr~la~~~HPDkn~~~~~---a~~~f~~i~~AY~vLsdp~~R~~YD~~ 70 (301)
.|||++|||+++ ++..+|+++||++++++|||++++..+ +...+..||+||++|+||.+|..|+-.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 589999999996 789999999999999999999875332 334688999999999999999999753
No 54
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.9e-14 Score=136.55 Aligned_cols=90 Identities=41% Similarity=0.570 Sum_probs=77.8
Q ss_pred CCCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHcCChhHHHHHHhcCCC--CCCC
Q 022164 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPND-PLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS--GIST 77 (301)
Q Consensus 1 m~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~-~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~--~~~~ 77 (301)
|.+..|||.||||..+++..+|++|||++++.+|||+|.++ .+++.+|+++.+||.+|+||.+|..||..-.- ....
T Consensus 369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~~~~~ 448 (486)
T KOG0550|consen 369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEEVGSG 448 (486)
T ss_pred HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhhhcCC
Confidence 45688999999999999999999999999999999999887 78999999999999999999999999985432 2223
Q ss_pred CCCCChHHHHHhh
Q 022164 78 EAIIDPAAIFAML 90 (301)
Q Consensus 78 ~~~~dp~~~f~~~ 90 (301)
++.+||...|..+
T Consensus 449 ~a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 449 GAGFDPFNIFRAF 461 (486)
T ss_pred CcCcChhhhhhhc
Confidence 3678888877766
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.8e-14 Score=129.16 Aligned_cols=73 Identities=49% Similarity=0.882 Sum_probs=65.3
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPND-PLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~-~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
..|||.+|||+++|+..+|++|||++++++|||+|++. ..++.+|+++.+||++|+||.+|..||.+|.++..
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~ 75 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK 75 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence 46899999999999999999999999999999999865 24556899999999999999999999999975443
No 56
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.46 E-value=2.8e-14 Score=134.25 Aligned_cols=68 Identities=40% Similarity=0.618 Sum_probs=62.5
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHcCChhHHHHHHhc
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDP---LAAQNFQVLGEAYQVLSDPAQRQAYDAY 70 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~---~a~~~f~~i~~AY~vLsdp~~R~~YD~~ 70 (301)
..+|||.||||.++|+..||.||||++|.+||||..++.. .|+.+|..|..|-+||+||++|+.+|..
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 4689999999999999999999999999999999887543 3788999999999999999999999973
No 57
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.1e-13 Score=124.96 Aligned_cols=68 Identities=41% Similarity=0.636 Sum_probs=62.8
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGK 72 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~ 72 (301)
-.|+|++|||+++++..+|.+|||+||+++|||+++ ++++.+.|..|..||++|.|.+.|..||-.-.
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r-~~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNR-DPESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccC-CchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 368999999999999999999999999999999998 57777999999999999999999999996543
No 58
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.4e-13 Score=129.64 Aligned_cols=68 Identities=40% Similarity=0.583 Sum_probs=64.7
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGK 72 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~ 72 (301)
..|+|.+|||++++|+++||+.||++|...|||||. .|.|++.|+.++.||++|+|+++|..||.--.
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ 301 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELK 301 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 579999999999999999999999999999999998 89999999999999999999999999997654
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.27 E-value=5.1e-12 Score=102.75 Aligned_cols=53 Identities=30% Similarity=0.395 Sum_probs=47.3
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLS 59 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLs 59 (301)
...++|+||||++++|.++||++||++++++|||+++ + .+.|++|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence 3468999999999999999999999999999999863 3 367899999999985
No 60
>PHA02624 large T antigen; Provisional
Probab=99.26 E-value=9e-12 Score=125.72 Aligned_cols=59 Identities=29% Similarity=0.484 Sum_probs=55.5
Q ss_pred CccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHH
Q 022164 5 TEYYDVLGVSPTA--SEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAY 67 (301)
Q Consensus 5 ~~~Y~iLgv~~~a--s~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~Y 67 (301)
.++|++|||+++| +..+||+|||++++++|||+++ + .++|++|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG-d---eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG-D---EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-c---HHHHHHHHHHHHHHhcHHHhhhc
Confidence 4789999999999 9999999999999999999974 3 47999999999999999999999
No 61
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.24 E-value=7.4e-12 Score=116.20 Aligned_cols=56 Identities=34% Similarity=0.504 Sum_probs=50.6
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--c-----hHHHHHHHHHHHHHHHcCC
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPN--D-----PLAAQNFQVLGEAYQVLSD 60 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~--~-----~~a~~~f~~i~~AY~vLsd 60 (301)
.++|++|||++++|.++||++||+++++||||++.+ . +.+.++|++|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999742 1 3478999999999999975
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.15 E-value=4.1e-11 Score=115.79 Aligned_cols=72 Identities=32% Similarity=0.613 Sum_probs=65.6
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPN-----DPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 76 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~-----~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~ 76 (301)
=|+|+|||++.+++..+||++||+|+.++||||-++ ..+-++.+..|++||..|+|...|+.|-.||....+
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 489999999999999999999999999999999875 135678999999999999999999999999987654
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.15 E-value=8.9e-11 Score=102.31 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=57.5
Q ss_pred CccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHcCChhHHHHHHh
Q 022164 5 TEYYDVLGVSPT--ASEAEIKKAYYIKARKVHPDKNPNDPL-----AAQNFQVLGEAYQVLSDPAQRQAYDA 69 (301)
Q Consensus 5 ~~~Y~iLgv~~~--as~~eIkkayr~la~~~HPDkn~~~~~-----a~~~f~~i~~AY~vLsdp~~R~~YD~ 69 (301)
.|||++||+|+. .+...++++||++.+++|||+..+.+. +.+....||+||++|+||.+|+.|=-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 699999999995 899999999999999999999865543 44568899999999999999999953
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.2e-10 Score=99.47 Aligned_cols=64 Identities=33% Similarity=0.608 Sum_probs=58.9
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHcCChhHHHHH
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPND-PLAAQNFQVLGEAYQVLSDPAQRQAY 67 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~-~~a~~~f~~i~~AY~vLsdp~~R~~Y 67 (301)
+-|+|+||.|.|..+.++||+.||++++..||||||+| +.|...|..+.+||..|-|+..|..-
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 46899999999999999999999999999999999988 67889999999999999999866643
No 65
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.00 E-value=8.1e-10 Score=94.94 Aligned_cols=54 Identities=31% Similarity=0.407 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHcCChhHHHHHHhc
Q 022164 17 ASEAEIKKAYYIKARKVHPDKNPNDP-----LAAQNFQVLGEAYQVLSDPAQRQAYDAY 70 (301)
Q Consensus 17 as~~eIkkayr~la~~~HPDkn~~~~-----~a~~~f~~i~~AY~vLsdp~~R~~YD~~ 70 (301)
.+..+|+++||++++++|||+.++.+ .+...|..||+||++|+||.+|+.|+-.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 57889999999999999999976433 2567899999999999999999999854
No 66
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4e-09 Score=96.45 Aligned_cols=85 Identities=29% Similarity=0.431 Sum_probs=68.7
Q ss_pred CCccccccCCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCC-CCCC
Q 022164 4 ETEYYDVLGVSP---TASEAEIKKAYYIKARKVHPDKN--PNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS-GIST 77 (301)
Q Consensus 4 ~~~~Y~iLgv~~---~as~~eIkkayr~la~~~HPDkn--~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~-~~~~ 77 (301)
..|+|.+||++. .+++.+|.+++++.+.+||||+. .++......|+.|+.||+||+|+.+|..||..--. .++.
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~advpp 121 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADVPP 121 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccCCCC
Confidence 468999999985 78999999999999999999996 34556778999999999999999999999975543 3444
Q ss_pred CCCCChHHHHH
Q 022164 78 EAIIDPAAIFA 88 (301)
Q Consensus 78 ~~~~dp~~~f~ 88 (301)
.-...|.+||.
T Consensus 122 p~~~t~~~Ffe 132 (379)
T COG5269 122 PRIYTPDEFFE 132 (379)
T ss_pred ccCCCchhHHH
Confidence 44445666553
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.5e-07 Score=94.72 Aligned_cols=56 Identities=34% Similarity=0.541 Sum_probs=47.7
Q ss_pred CCCCCccccccCCCC----CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcC
Q 022164 1 MVKETEYYDVLGVSP----TASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLS 59 (301)
Q Consensus 1 m~~~~~~Y~iLgv~~----~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLs 59 (301)
|+...+-|+||.|+- .-.++.||++|+++|.+||||||| +-.+.|.++++||+.|+
T Consensus 1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLS 1336 (2235)
T ss_pred ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHH
Confidence 455667899999974 345588999999999999999997 45689999999999998
No 68
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.2e-06 Score=78.75 Aligned_cols=55 Identities=33% Similarity=0.591 Sum_probs=49.1
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH-HcCC
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQ-VLSD 60 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~-vLsd 60 (301)
+.||.+|||..+|+.++++.||..|++++|||... +....++|.+|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999885 3445679999999999 7774
No 69
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=6.4e-06 Score=65.61 Aligned_cols=49 Identities=29% Similarity=0.390 Sum_probs=42.3
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCh
Q 022164 9 DVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDP 61 (301)
Q Consensus 9 ~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp 61 (301)
-||||+|+++.+.||.|+|++....|||+.. .|= .=.+||||+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GG-SPY---lAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGG-SPY---LASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCC-CHH---HHHHHHHHHHHHhcc
Confidence 4999999999999999999999999999986 453 223799999999754
No 70
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00028 Score=60.09 Aligned_cols=85 Identities=28% Similarity=0.464 Sum_probs=64.4
Q ss_pred CCCCCccccccCCC--CCCCHHHHHHHHHHHHHHhCCCCCCC----ch-HHHHHHHHHHHHHHHcCChhHHHHHH--hcC
Q 022164 1 MVKETEYYDVLGVS--PTASEAEIKKAYYIKARKVHPDKNPN----DP-LAAQNFQVLGEAYQVLSDPAQRQAYD--AYG 71 (301)
Q Consensus 1 m~~~~~~Y~iLgv~--~~as~~eIkkayr~la~~~HPDkn~~----~~-~a~~~f~~i~~AY~vLsdp~~R~~YD--~~g 71 (301)
|....+||+++|.. +...++.+..-|.-...++|||+... ++ .|.+....+++||.+|.||-+|+.|= ..|
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 34567899999765 45567777778999999999998431 22 47788999999999999999999995 567
Q ss_pred CCCCCCCCCCChHH
Q 022164 72 KSGISTEAIIDPAA 85 (301)
Q Consensus 72 ~~~~~~~~~~dp~~ 85 (301)
.+........||.-
T Consensus 84 ~e~~sne~stDpe~ 97 (168)
T KOG3192|consen 84 QEQTSNELSTDPEF 97 (168)
T ss_pred CCCchhhhccCHHH
Confidence 65555554557753
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.004 Score=54.30 Aligned_cols=54 Identities=33% Similarity=0.429 Sum_probs=46.4
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--Cch-----HHHHHHHHHHHHHHHc
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP--NDP-----LAAQNFQVLGEAYQVL 58 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~--~~~-----~a~~~f~~i~~AY~vL 58 (301)
.+.|.+||+++.++..+|+++|+++....|||+-. +.| .+.+++++|++||+-+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999999999999999999843 222 3778899999999853
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0064 Score=53.02 Aligned_cols=65 Identities=26% Similarity=0.327 Sum_probs=51.7
Q ss_pred ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHcCChhHHHHHHhc
Q 022164 6 EYYDVLGVSPTA--SEAEIKKAYYIKARKVHPDKNPNDPL-----AAQNFQVLGEAYQVLSDPAQRQAYDAY 70 (301)
Q Consensus 6 ~~Y~iLgv~~~a--s~~eIkkayr~la~~~HPDkn~~~~~-----a~~~f~~i~~AY~vLsdp~~R~~YD~~ 70 (301)
+|+...|.++.+ ..+.++..|+.+.+.+|||+....+. +.+.+..++.||.+|.||-.|..|=.-
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 456666777654 45568999999999999999865443 345799999999999999999999653
No 73
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.56 E-value=0.013 Score=58.44 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 022164 15 PTASEAEIKKAYYIKARKVHPDKNPND 41 (301)
Q Consensus 15 ~~as~~eIkkayr~la~~~HPDkn~~~ 41 (301)
.=.++.+|||+|||..+..||||.++.
T Consensus 398 DLVtp~~VKKaYrKA~L~VHPDKlqq~ 424 (453)
T KOG0431|consen 398 DLVTPAQVKKAYRKAVLCVHPDKLQQK 424 (453)
T ss_pred hccCHHHHHHHHHhhhheeCcccccCC
Confidence 345899999999999999999998765
No 74
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=93.02 E-value=0.2 Score=41.69 Aligned_cols=51 Identities=22% Similarity=0.139 Sum_probs=35.4
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChh
Q 022164 8 YDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPA 62 (301)
Q Consensus 8 Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~ 62 (301)
..||||++..+.++|.+.|.+|-...+|++.+. . -.-.+|..|.+.|...-
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS-f---YLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKGGS-F---YLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCTS--H---HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC-H---HHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999998853 2 33346777777776443
No 75
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=82.34 E-value=8.6 Score=33.53 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=21.8
Q ss_pred HHHHHHHhHh------HHHHHHHHHHHHHHhcc
Q 022164 263 LMIDSLWKLN------VADIEATLSRVCQMVVL 289 (301)
Q Consensus 263 ~~L~a~W~~~------~~dIe~tlr~Vc~~VL~ 289 (301)
..++.+|+.+ .+|+|+++++.-+++-.
T Consensus 187 eaveiawkatv~akd~lidve~~vke~ldkikt 219 (254)
T PF03207_consen 187 EAVEIAWKATVEAKDKLIDVENTVKETLDKIKT 219 (254)
T ss_pred HHHHHHHHHHhhhhhhHhhHHHHHHHHHHHHhh
Confidence 3578889766 48999999999998753
No 76
>PF13446 RPT: A repeated domain in UCH-protein
Probab=78.03 E-value=4.7 Score=28.71 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.7
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHH
Q 022164 6 EYYDVLGVSPTASEAEIKKAYYIKAR 31 (301)
Q Consensus 6 ~~Y~iLgv~~~as~~eIkkayr~la~ 31 (301)
+-|+.|||+++.+.+.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998876
No 77
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=77.99 E-value=2.2 Score=40.70 Aligned_cols=55 Identities=31% Similarity=0.460 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHcCChhHHHHHHhc
Q 022164 16 TASEAEIKKAYYIKARKVHPDKNPN----DPLAAQNFQVLGEAYQVLSDPAQRQAYDAY 70 (301)
Q Consensus 16 ~as~~eIkkayr~la~~~HPDkn~~----~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~ 70 (301)
-++..+|+.+|+..+...||++-.. ....++.|+.|.+||.||++...|...|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 4678899999999999999998731 224567899999999999987665555543
No 78
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=68.73 E-value=11 Score=30.54 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCchHH----HHHHHHHHHHHHHcCCh
Q 022164 15 PTASEAEIKKAYYIKARKVHPDKNPNDPLA----AQNFQVLGEAYQVLSDP 61 (301)
Q Consensus 15 ~~as~~eIkkayr~la~~~HPDkn~~~~~a----~~~f~~i~~AY~vLsdp 61 (301)
...+..+++.|.|..-++.|||.....|+. ++-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 456778899999999999999987666653 33477777766666654
No 79
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=62.26 E-value=16 Score=32.45 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCh
Q 022164 14 SPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDP 61 (301)
Q Consensus 14 ~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp 61 (301)
+++||.+||.+|+.++..+|- +|+ +.-.+|..||+.+.=.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-----gd~---~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-----GDE---KSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHHHHHH
Confidence 579999999999999999883 233 3455799999954433
No 80
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=48.24 E-value=59 Score=24.62 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=28.2
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 022164 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP 39 (301)
Q Consensus 6 ~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~ 39 (301)
|--++.|++|-|++.||+.|-++.++++.--..|
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 3446789999999999999999999888666655
No 81
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=46.80 E-value=40 Score=26.38 Aligned_cols=52 Identities=27% Similarity=0.547 Sum_probs=33.0
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHH-hcCC
Q 022164 12 GVSPTASE-AEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYD-AYGK 72 (301)
Q Consensus 12 gv~~~as~-~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD-~~g~ 72 (301)
|++|+... .+|-+.++.+...++|. ++ +.+..|.+.| +.||.-+..|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~----~~---~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG----DP---ELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-------H---HHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC----CH---HHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 56665543 34677777777766661 22 5777888888 78899899888 6654
No 82
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.92 E-value=48 Score=27.54 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=28.9
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 022164 8 YDVLGVSPTASEAEIKKAYYIKARKVHPDKNP 39 (301)
Q Consensus 8 Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~ 39 (301)
-.||+|++..+.++|.+.|..|-....|.|..
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCcccCc
Confidence 36999999999999999999999988888775
No 83
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=31.37 E-value=2.8e+02 Score=22.32 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=15.4
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHH
Q 022164 235 QEDMKKQLSAEGNYTEEELEEYMQS 259 (301)
Q Consensus 235 ~~~~~k~~~~~~~~~~ee~~~~~~~ 259 (301)
.++++|+. ++++|||++++.++
T Consensus 80 ~~~lqkRl---e~l~~eE~~~L~~e 101 (104)
T PF11460_consen 80 NEELQKRL---EELSPEELEALQAE 101 (104)
T ss_pred HHHHHHHH---HhCCHHHHHHHHHH
Confidence 35677764 45799998887654
No 84
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=25.32 E-value=1.4e+02 Score=20.54 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhc
Q 022164 26 YYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAY 70 (301)
Q Consensus 26 yr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~ 70 (301)
.|.....-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 15 ~r~~~~~~~p~~~-----~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 15 QRPKLKKENPDAS-----VTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455566788854 347788999999999977665555543
No 85
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=25.00 E-value=1.5e+02 Score=20.22 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 022164 23 KKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDA 69 (301)
Q Consensus 23 kkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~ 69 (301)
.+.++...+.-||+.+ ..+..+.+.+.|..|++.++....+.
T Consensus 12 ~~~~~~~~~~~~~~~~-----~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGLS-----VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4456666777888854 34678889999999997665554443
No 86
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=24.68 E-value=1.5e+02 Score=21.30 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 022164 24 KAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDA 69 (301)
Q Consensus 24 kayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~ 69 (301)
+..|...+.-||+... .+..+.|.+.|..|++.++...++.
T Consensus 14 ~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKEN-----RAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455566677888542 3677889999999998776655544
No 87
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=23.85 E-value=66 Score=16.15 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHcC
Q 022164 47 NFQVLGEAYQVLS 59 (301)
Q Consensus 47 ~f~~i~~AY~vLs 59 (301)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888887764
No 88
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.44 E-value=3.2e+02 Score=20.79 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=26.6
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 022164 9 DVLGVSPTASEAEIKKAYYIKARKVHPDKNPN 40 (301)
Q Consensus 9 ~iLgv~~~as~~eIkkayr~la~~~HPDkn~~ 40 (301)
.+-|+.|-+|.+||+.|-.+.++|..--..|.
T Consensus 7 ~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps 38 (78)
T PF10041_consen 7 TLRNFEPPATDEEIRAAALQYVRKVSGFRKPS 38 (78)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHccCCCcc
Confidence 35578899999999999999999987666653
No 89
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=20.57 E-value=1.2e+02 Score=18.47 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 022164 18 SEAEIKKAYYIKARKVHP 35 (301)
Q Consensus 18 s~~eIkkayr~la~~~HP 35 (301)
..++.|.+-|+.|+.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347789999999999993
No 90
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=20.35 E-value=1.6e+02 Score=22.88 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHhHHHHHHHHHhHhHHHHHHHHHHHHHHhccccchh
Q 022164 248 YTEEELEEYMQSHKKLMIDSLWKLNVADIEATLSRVCQMVVLLVSYY 294 (301)
Q Consensus 248 ~~~ee~~~~~~~~~~~~L~a~W~~~~~dIe~tlr~Vc~~VL~D~~v~ 294 (301)
+++|++..++. |+-+.|.= ++||++|+.++.+.+|+
T Consensus 8 f~~eQ~~Rye~----------fRRs~~~k-~~ikkli~~~~~~qsv~ 43 (90)
T PF04719_consen 8 FDEEQLDRYEA----------FRRSSFNK-AAIKKLINQVLGNQSVS 43 (90)
T ss_dssp --HHHHHHHHH----------HHH----H-HHHHHHHHHHHS-S---
T ss_pred CCHHHHHHHHH----------HHHccCCH-HHHHHHHHHHcCCCCCC
Confidence 45566655542 44444432 25666666666655554
Done!