Query 022164
Match_columns 301
No_of_seqs 307 out of 2349
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:58:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bq0_A DNAJ, HSP40; chaperone, 99.9 5.9E-23 2E-27 163.0 4.6 74 4-77 2-75 (103)
2 2dn9_A DNAJ homolog subfamily 99.9 2.6E-22 8.9E-27 151.6 7.9 73 3-75 5-77 (79)
3 1hdj_A Human HSP40, HDJ-1; mol 99.9 2.7E-22 9.1E-27 150.9 8.0 73 4-77 2-74 (77)
4 2och_A Hypothetical protein DN 99.9 2.8E-22 9.5E-27 149.4 8.0 69 1-72 4-72 (73)
5 2ej7_A HCG3 gene; HCG3 protein 99.8 1.4E-21 5E-26 148.5 8.2 72 4-75 8-80 (82)
6 2ctw_A DNAJ homolog subfamily 99.8 2.7E-21 9.1E-26 155.1 9.8 88 3-100 15-102 (109)
7 2ctp_A DNAJ homolog subfamily 99.8 1.9E-21 6.5E-26 146.6 8.4 71 3-74 5-75 (78)
8 2ctq_A DNAJ homolog subfamily 99.8 7.5E-22 2.6E-26 159.0 5.7 74 2-75 17-90 (112)
9 2cug_A Mkiaa0962 protein; DNAJ 99.8 2.8E-21 9.7E-26 149.1 7.9 71 3-74 15-85 (88)
10 2o37_A Protein SIS1; HSP40, J- 99.8 5.9E-21 2E-25 148.5 7.7 72 1-75 4-75 (92)
11 2lgw_A DNAJ homolog subfamily 99.8 3.6E-21 1.2E-25 151.9 6.3 73 5-77 2-75 (99)
12 2dmx_A DNAJ homolog subfamily 99.8 6.3E-21 2.2E-25 148.2 7.4 75 4-78 8-83 (92)
13 2yua_A Williams-beuren syndrom 99.8 1E-20 3.4E-25 149.2 8.4 70 3-72 15-84 (99)
14 2ctr_A DNAJ homolog subfamily 99.8 7.9E-21 2.7E-25 146.6 7.4 72 3-75 5-76 (88)
15 1wjz_A 1700030A21RIK protein; 99.8 9.6E-21 3.3E-25 147.5 6.7 72 2-73 13-90 (94)
16 3apq_A DNAJ homolog subfamily 99.8 3E-20 1E-24 163.0 8.5 73 5-77 2-74 (210)
17 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 9.2E-21 3.2E-25 151.8 4.5 72 2-73 12-87 (109)
18 3hho_A CO-chaperone protein HS 99.8 2.4E-18 8.4E-23 148.7 13.6 68 3-70 2-76 (174)
19 3bvo_A CO-chaperone protein HS 99.8 6.3E-18 2.2E-22 149.9 15.5 82 4-85 42-133 (207)
20 3lz8_A Putative chaperone DNAJ 99.8 2.5E-20 8.6E-25 176.1 0.0 71 2-73 25-95 (329)
21 1fpo_A HSC20, chaperone protei 99.8 5.5E-18 1.9E-22 146.1 14.2 68 5-72 1-75 (171)
22 2l6l_A DNAJ homolog subfamily 99.7 8.9E-19 3E-23 148.5 6.7 70 3-72 8-83 (155)
23 2ys8_A RAB-related GTP-binding 99.7 5.5E-19 1.9E-23 136.9 3.4 62 3-65 25-86 (90)
24 1gh6_A Large T antigen; tumor 99.7 1E-19 3.6E-24 147.0 -1.2 87 5-104 8-96 (114)
25 1faf_A Large T antigen; J doma 99.7 8E-18 2.7E-22 127.4 3.9 65 5-74 11-77 (79)
26 2pf4_E Small T antigen; PP2A, 99.7 1.8E-18 6.2E-23 149.2 -0.8 64 5-72 11-76 (174)
27 3uo3_A J-type CO-chaperone JAC 99.7 6.3E-17 2.2E-21 140.7 8.4 65 3-70 9-80 (181)
28 1iur_A KIAA0730 protein; DNAJ 99.7 1.4E-17 4.7E-22 128.7 2.5 61 4-64 15-76 (88)
29 2qwo_B Putative tyrosine-prote 99.6 3.4E-17 1.2E-21 127.3 2.1 56 5-60 33-91 (92)
30 1n4c_A Auxilin; four helix bun 99.6 3.8E-17 1.3E-21 141.8 1.4 63 5-67 117-182 (182)
31 3apo_A DNAJ homolog subfamily 99.6 3E-17 1E-21 169.6 0.7 75 3-77 19-93 (780)
32 3ag7_A Putative uncharacterize 99.6 1.2E-16 4.2E-21 127.4 3.1 59 3-62 39-104 (106)
33 2guz_A Mitochondrial import in 99.6 4.8E-16 1.7E-20 115.1 2.4 57 4-64 13-70 (71)
34 2y4t_A DNAJ homolog subfamily 99.0 1.2E-10 4E-15 109.1 5.3 66 4-69 381-449 (450)
35 2guz_B Mitochondrial import in 98.7 1.1E-08 3.9E-13 74.1 4.8 52 5-60 4-58 (65)
36 1ny9_A Transcriptional activat 45.7 37 0.0013 26.9 5.7 53 12-72 71-124 (143)
37 2cqn_A Formin-binding protein 35.4 85 0.0029 22.5 5.7 54 16-70 5-61 (77)
38 4a3n_A Transcription factor SO 24.0 88 0.003 21.1 3.9 41 23-68 14-54 (71)
39 1hry_A Human SRY; DNA, DNA-bin 23.7 1.5E+02 0.0052 20.2 5.3 41 23-68 16-56 (76)
40 1wz6_A HMG-box transcription f 21.5 1.6E+02 0.0055 20.5 5.1 42 23-69 19-60 (82)
41 1qqr_A Streptokinase domain B; 20.4 57 0.002 26.3 2.5 32 6-37 33-64 (138)
No 1
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.87 E-value=5.9e-23 Score=163.03 Aligned_cols=74 Identities=47% Similarity=0.785 Sum_probs=69.8
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST 77 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~ 77 (301)
..|||+||||++++|.++||+|||++++++|||++++++.+.++|+.|++||++|+||.+|..||.+|..++..
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 75 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcc
Confidence 47999999999999999999999999999999999877889999999999999999999999999999887654
No 2
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.6e-22 Score=151.61 Aligned_cols=73 Identities=52% Similarity=0.861 Sum_probs=69.0
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 75 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~ 75 (301)
...|||+||||+++++.++||+|||++++++|||++++++.+.++|+.|++||++|+||.+|..||.+|..+.
T Consensus 5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 77 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS 77 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence 4679999999999999999999999999999999999888899999999999999999999999999997653
No 3
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.87 E-value=2.7e-22 Score=150.92 Aligned_cols=73 Identities=45% Similarity=0.831 Sum_probs=67.9
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST 77 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~ 77 (301)
..|||+||||++++|.++||+|||++++++|||+++ ++.+.+.|+.|++||++|+||.+|..||.+|..++..
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 74 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCC-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence 468999999999999999999999999999999997 4678899999999999999999999999999876653
No 4
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.87 E-value=2.8e-22 Score=149.41 Aligned_cols=69 Identities=59% Similarity=0.923 Sum_probs=63.4
Q ss_pred CCCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCC
Q 022164 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGK 72 (301)
Q Consensus 1 m~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~ 72 (301)
|+.+.+||+||||+++++.++||+|||++++++|||+++++ .+.|+.|++||++|+||.+|..||++|.
T Consensus 4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 78899999999999999999999999999999999999854 5789999999999999999999999996
No 5
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=148.51 Aligned_cols=72 Identities=47% Similarity=0.718 Sum_probs=67.1
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDP-LAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 75 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~-~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~ 75 (301)
..|||+||||+++++.++||+|||++++++|||++++++ .+.+.|+.|++||++|+||.+|..||.+|..+.
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 579999999999999999999999999999999998654 678899999999999999999999999998664
No 6
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=2.7e-21 Score=155.13 Aligned_cols=88 Identities=40% Similarity=0.689 Sum_probs=75.6
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIID 82 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~~~~d 82 (301)
...+||+||||+++|+.++||+|||++++++|||++++++.+.++|+.|++||++|+||.+|..||.+|..+.
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~------- 87 (109)
T 2ctw_A 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL------- 87 (109)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH-------
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc-------
Confidence 4689999999999999999999999999999999999889999999999999999999999999999986431
Q ss_pred hHHHHHhhhcchhHHHHh
Q 022164 83 PAAIFAMLFGSELFEDYI 100 (301)
Q Consensus 83 p~~~f~~~fg~~~f~~~~ 100 (301)
.....+|.+.|.+|+
T Consensus 88 ---~~~~~~~~~~~~~~~ 102 (109)
T 2ctw_A 88 ---YVAEQFGEENVNTYF 102 (109)
T ss_dssp ---HHHHHTCTTHHHHHH
T ss_pred ---ccccccCCcchHHHh
Confidence 122345555666554
No 7
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-21 Score=146.59 Aligned_cols=71 Identities=46% Similarity=0.813 Sum_probs=67.2
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 74 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~ 74 (301)
...|||+||||+++++.++||+|||++++++|||+++ ++.+.+.|+.|++||++|+||.+|..||.+|..+
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCS-SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 4689999999999999999999999999999999997 5788999999999999999999999999999765
No 8
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=7.5e-22 Score=159.03 Aligned_cols=74 Identities=31% Similarity=0.613 Sum_probs=69.7
Q ss_pred CCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCC
Q 022164 2 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 75 (301)
Q Consensus 2 ~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~ 75 (301)
....|||+||||+++|+.++||+|||++++++|||++++++.+.++|+.|++||+||+||.+|..||++|..++
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 35689999999999999999999999999999999999888899999999999999999999999999997654
No 9
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=2.8e-21 Score=149.09 Aligned_cols=71 Identities=49% Similarity=0.733 Sum_probs=67.0
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 74 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~ 74 (301)
.+.|||+||||+++++.++||+|||++++++|||+++ ++.+.++|+.|++||++|+||.+|..||.+|..+
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCC-STTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 4789999999999999999999999999999999997 4778899999999999999999999999999764
No 10
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.9e-21 Score=148.53 Aligned_cols=72 Identities=50% Similarity=0.862 Sum_probs=67.0
Q ss_pred CCCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCC
Q 022164 1 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 75 (301)
Q Consensus 1 m~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~ 75 (301)
|+.+.|||+||||+++++.++||+|||++++++|||++++++ ++|+.|++||++|+||.+|..||.+|..++
T Consensus 4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 75 (92)
T 2o37_A 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEILNDPQKREIYDQYGLEAA 75 (92)
T ss_dssp CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCH---HHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChH---HHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence 778999999999999999999999999999999999998653 699999999999999999999999997643
No 11
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.83 E-value=3.6e-21 Score=151.89 Aligned_cols=73 Identities=47% Similarity=0.837 Sum_probs=65.4
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCC
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPND-PLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST 77 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~-~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~ 77 (301)
.|||+||||+++||.++||+|||++++++|||+++++ +.+.+.|+.|++||++|+||.+|..||.+|..++..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 6899999999999999999999999999999999865 458899999999999999999999999999876553
No 12
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.3e-21 Score=148.17 Aligned_cols=75 Identities=44% Similarity=0.699 Sum_probs=68.8
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCC
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPND-PLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE 78 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~-~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~ 78 (301)
..|||+||||+++++.++||+|||++++++|||+++++ +.+.++|+.|++||++|+||.+|..||.+|..+....
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 83 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAG 83 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCCC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence 57999999999999999999999999999999999865 4688999999999999999999999999998765543
No 13
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=149.15 Aligned_cols=70 Identities=40% Similarity=0.601 Sum_probs=66.4
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGK 72 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~ 72 (301)
...+||+||||+++|+.++||+|||++++++|||++++++.+.++|+.|++||+||+||.+|..||+...
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 4689999999999999999999999999999999999889999999999999999999999999998543
No 14
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.9e-21 Score=146.58 Aligned_cols=72 Identities=47% Similarity=0.748 Sum_probs=67.4
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 75 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~ 75 (301)
...|||+||||+++++.++||+|||++++++|||+++ ++.+.++|+.|++||++|+||.+|..||.+|..++
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF 76 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 4679999999999999999999999999999999998 68899999999999999999999999999997543
No 15
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.82 E-value=9.6e-21 Score=147.46 Aligned_cols=72 Identities=25% Similarity=0.512 Sum_probs=66.0
Q ss_pred CCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHcCChhHHHHHHhcCCC
Q 022164 2 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPND------PLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 73 (301)
Q Consensus 2 ~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~------~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~ 73 (301)
+...|||+||||+++|+.++||+|||++++++|||+++++ +.+.++|+.|++||+||+||.+|..||.+...
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 3578999999999999999999999999999999999743 56889999999999999999999999998753
No 16
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.81 E-value=3e-20 Score=163.01 Aligned_cols=73 Identities=47% Similarity=0.799 Sum_probs=69.4
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCC
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST 77 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~ 77 (301)
.|||+||||+++||.++||+|||++++++|||++++++++.++|+.|++||++|+||.+|..||++|..+...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~ 74 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 74 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccc
Confidence 5899999999999999999999999999999999988899999999999999999999999999999877543
No 17
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.81 E-value=9.2e-21 Score=151.76 Aligned_cols=72 Identities=36% Similarity=0.560 Sum_probs=66.6
Q ss_pred CCCCccccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHHcCChhHHHHHHhcCCC
Q 022164 2 VKETEYYDVLGVSPTA-SEAEIKKAYYIKARKVHPDKNPN---DPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 73 (301)
Q Consensus 2 ~~~~~~Y~iLgv~~~a-s~~eIkkayr~la~~~HPDkn~~---~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~ 73 (301)
....|||+||||+++| |.++||+|||++++++|||++++ .+.+.+.|+.|++||++|+||.+|..||.+|..
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 3578999999999999 99999999999999999999985 366889999999999999999999999999853
No 18
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.77 E-value=2.4e-18 Score=148.73 Aligned_cols=68 Identities=22% Similarity=0.429 Sum_probs=61.7
Q ss_pred CCCccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHcCChhHHHHHHhc
Q 022164 3 KETEYYDVLGVSPTAS--EAEIKKAYYIKARKVHPDKNPNDPL-----AAQNFQVLGEAYQVLSDPAQRQAYDAY 70 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as--~~eIkkayr~la~~~HPDkn~~~~~-----a~~~f~~i~~AY~vLsdp~~R~~YD~~ 70 (301)
...|||+||||+++++ ..+||++||++++++|||++++.+. +.+.|+.|++||+||+||.+|..||..
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 3679999999999998 9999999999999999999987654 668999999999999999999999974
No 19
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.77 E-value=6.3e-18 Score=149.92 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=67.3
Q ss_pred CCccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHcCChhHHHHHHh--cCCCC
Q 022164 4 ETEYYDVLGVSPT--ASEAEIKKAYYIKARKVHPDKNPNDPL-----AAQNFQVLGEAYQVLSDPAQRQAYDA--YGKSG 74 (301)
Q Consensus 4 ~~~~Y~iLgv~~~--as~~eIkkayr~la~~~HPDkn~~~~~-----a~~~f~~i~~AY~vLsdp~~R~~YD~--~g~~~ 74 (301)
..|||++|||+++ ++..+||++||++++++|||++++++. +.++|+.|++||+||+||.+|..||. .|..-
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~ 121 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEI 121 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCCCc
Confidence 5799999999986 799999999999999999999986543 55789999999999999999999984 55432
Q ss_pred CCC-CCCCChHH
Q 022164 75 IST-EAIIDPAA 85 (301)
Q Consensus 75 ~~~-~~~~dp~~ 85 (301)
... ...+||..
T Consensus 122 ~~e~~~~~d~~f 133 (207)
T 3bvo_A 122 PERTDYEMDRQF 133 (207)
T ss_dssp CSSCSSSSCHHH
T ss_pred ccccccCCCHHH
Confidence 222 34567753
No 20
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.77 E-value=2.5e-20 Score=176.05 Aligned_cols=71 Identities=39% Similarity=0.608 Sum_probs=0.0
Q ss_pred CCCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCC
Q 022164 2 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 73 (301)
Q Consensus 2 ~~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~ 73 (301)
+...|||++|||+++||.++||+|||+++++||||+|+ ++.|+++|++|++||++|+||.+|+.||+++..
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 95 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH 95 (329)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCC-ChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence 34579999999999999999999999999999999998 468899999999999999999999999998543
No 21
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.76 E-value=5.5e-18 Score=146.15 Aligned_cols=68 Identities=22% Similarity=0.368 Sum_probs=62.1
Q ss_pred CccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHcCChhHHHHHHhcCC
Q 022164 5 TEYYDVLGVSPTA--SEAEIKKAYYIKARKVHPDKNPNDPL-----AAQNFQVLGEAYQVLSDPAQRQAYDAYGK 72 (301)
Q Consensus 5 ~~~Y~iLgv~~~a--s~~eIkkayr~la~~~HPDkn~~~~~-----a~~~f~~i~~AY~vLsdp~~R~~YD~~g~ 72 (301)
.|||++|||++++ |..+||++||+++++||||++++++. |.++|+.|++||+||+||.+|..||....
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 3899999999999 99999999999999999999987653 45799999999999999999999998643
No 22
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=8.9e-19 Score=148.48 Aligned_cols=70 Identities=26% Similarity=0.522 Sum_probs=64.1
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHHHHHcCChhHHHHHHhcCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDP------LAAQNFQVLGEAYQVLSDPAQRQAYDAYGK 72 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~------~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~ 72 (301)
...|||+||||+++++.++||+|||++++++|||++++++ .+.+.|+.|++||++|+||.+|+.||..+.
T Consensus 8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 4679999999999999999999999999999999998653 367899999999999999999999998664
No 23
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.5e-19 Score=136.93 Aligned_cols=62 Identities=32% Similarity=0.457 Sum_probs=58.1
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHH
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQ 65 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~ 65 (301)
...|||+||||+++|+.++||+|||++++++|||+++ ++.+.++|+.|++||++|+||.+|.
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCC-CTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCccccc
Confidence 4689999999999999999999999999999999997 4778899999999999999999875
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.74 E-value=1e-19 Score=147.03 Aligned_cols=87 Identities=22% Similarity=0.408 Sum_probs=70.5
Q ss_pred CccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCCCCCCC
Q 022164 5 TEYYDVLGVSPTASE--AEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIID 82 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~--~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~~~~~d 82 (301)
.+||+||||+++|+. .+||+|||++++++|||++++ .++|++|++||+||+||.+|+.||.+|...-...
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~~w~~~~---- 79 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATE---- 79 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSCCCCCCC----
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccccccccc----
Confidence 589999999999999 999999999999999999975 4799999999999999999999999886421111
Q ss_pred hHHHHHhhhcchhHHHHhhhHH
Q 022164 83 PAAIFAMLFGSELFEDYIGQLA 104 (301)
Q Consensus 83 p~~~f~~~fg~~~f~~~~g~~~ 104 (301)
...||...|++|.+...
T Consensus 80 -----~~~~g~p~w~~w~~~~~ 96 (114)
T 1gh6_A 80 -----IPTYGTDEWEQWWNAFN 96 (114)
T ss_dssp -----CCCCSSSCHHHHHHHHH
T ss_pred -----CCCCCCchHHHHHhccc
Confidence 12355566676654433
No 25
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.69 E-value=8e-18 Score=127.36 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=58.8
Q ss_pred CccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 022164 5 TEYYDVLGVSPT--ASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 74 (301)
Q Consensus 5 ~~~Y~iLgv~~~--as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~ 74 (301)
.++|+||||+++ +|..+||+|||++++++|||++++ .++|++|++||++|+||.+|.. +.||..+
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~ 77 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLR-MNLGGTG 77 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHH-HhcCCcc
Confidence 478999999999 999999999999999999999863 4799999999999999999988 5677654
No 26
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.68 E-value=1.8e-18 Score=149.15 Aligned_cols=64 Identities=23% Similarity=0.453 Sum_probs=57.7
Q ss_pred CccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCC
Q 022164 5 TEYYDVLGVSPTAS--EAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGK 72 (301)
Q Consensus 5 ~~~Y~iLgv~~~as--~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~ 72 (301)
.+||+||||+++|+ .++||+|||++++++|||++++ .++|++|++||++|+||.+|+.||++|.
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 68999999999999 6999999999999999999975 3799999999999999999999999996
No 27
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.68 E-value=6.3e-17 Score=140.69 Aligned_cols=65 Identities=23% Similarity=0.460 Sum_probs=59.4
Q ss_pred CCCcccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhc
Q 022164 3 KETEYYDVL------GVSP-TASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAY 70 (301)
Q Consensus 3 ~~~~~Y~iL------gv~~-~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~ 70 (301)
...|||+|| |+++ ++|..+||+|||++++++|||++++ +.++|+.|++||+||+||.+|..||..
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 357999999 4665 9999999999999999999999985 678999999999999999999999983
No 28
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.67 E-value=1.4e-17 Score=128.65 Aligned_cols=61 Identities=30% Similarity=0.260 Sum_probs=56.4
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHcCChhHH
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDP-LAAQNFQVLGEAYQVLSDPAQR 64 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~-~a~~~f~~i~~AY~vLsdp~~R 64 (301)
..++|+||||+++||.++||+|||+++++||||+|++++ .+.++|+.|++||++|+|+..|
T Consensus 15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 357999999999999999999999999999999998764 5889999999999999998776
No 29
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.64 E-value=3.4e-17 Score=127.32 Aligned_cols=56 Identities=23% Similarity=0.394 Sum_probs=51.9
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHcCC
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDP---LAAQNFQVLGEAYQVLSD 60 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~---~a~~~f~~i~~AY~vLsd 60 (301)
.++|++|||+++||.++||+|||++++++||||||+++ .|+++|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999998765 378899999999999964
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.63 E-value=3.8e-17 Score=141.82 Aligned_cols=63 Identities=25% Similarity=0.456 Sum_probs=58.8
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHHHHHcCChhHHHHH
Q 022164 5 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPL---AAQNFQVLGEAYQVLSDPAQRQAY 67 (301)
Q Consensus 5 ~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~---a~~~f~~i~~AY~vLsdp~~R~~Y 67 (301)
.+||++|||+++|+.++||+|||++++++||||+++++. |.++|+.|++||+||+||.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 689999999999999999999999999999999986553 789999999999999999999765
No 31
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.63 E-value=3e-17 Score=169.57 Aligned_cols=75 Identities=45% Similarity=0.793 Sum_probs=40.9
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCCCCCCC
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST 77 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~~~~~~ 77 (301)
.+.|||++|||+++||.++||+|||++++++|||++++++.+.++|+.|++||++|+||.+|+.||++|..+...
T Consensus 19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~ 93 (780)
T 3apo_A 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 93 (780)
T ss_dssp ----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence 468999999999999999999999999999999999888899999999999999999999999999999876543
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.62 E-value=1.2e-16 Score=127.42 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=52.6
Q ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---ch----HHHHHHHHHHHHHHHcCChh
Q 022164 3 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPN---DP----LAAQNFQVLGEAYQVLSDPA 62 (301)
Q Consensus 3 ~~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~---~~----~a~~~f~~i~~AY~vLsdp~ 62 (301)
.+.|||+|||+++ ||.++||+|||++++++|||||++ ++ .|.++|+.|++||++|+||.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 4679999999996 999999999999999999999873 22 46889999999999999985
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.8e-16 Score=115.13 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=51.3
Q ss_pred CCccccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHH
Q 022164 4 ETEYYDVLGVSP-TASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQR 64 (301)
Q Consensus 4 ~~~~Y~iLgv~~-~as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R 64 (301)
..++|+||||++ ++|.++||+|||++++++|||+++ ++ +.|++|++||++|+|+..|
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g-~~---~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG-SP---FLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC-CH---HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CH---HHHHHHHHHHHHHhhhhhc
Confidence 358999999999 799999999999999999999974 43 5999999999999998655
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.04 E-value=1.2e-10 Score=109.07 Aligned_cols=66 Identities=39% Similarity=0.607 Sum_probs=56.4
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 022164 4 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPND---PLAAQNFQVLGEAYQVLSDPAQRQAYDA 69 (301)
Q Consensus 4 ~~~~Y~iLgv~~~as~~eIkkayr~la~~~HPDkn~~~---~~a~~~f~~i~~AY~vLsdp~~R~~YD~ 69 (301)
..++|.+||++++++.++|+++|+++++++|||+.+++ +.+++.|+.|++||++|+||++|..||+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 35899999999999999999999999999999999854 3478899999999999999999999997
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.1e-08 Score=74.12 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=44.9
Q ss_pred CccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCC
Q 022164 5 TEYYDVLGVSPT---ASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSD 60 (301)
Q Consensus 5 ~~~Y~iLgv~~~---as~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsd 60 (301)
.+-|.||||+++ ++.++|+++||+|...+|||+.. ++ .....|++|+++|..
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGG-S~---yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGG-SF---YLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTC-CH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHHHH
Confidence 356889999999 99999999999999999999975 33 566789999998864
No 36
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=45.73 E-value=37 Score=26.86 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=31.8
Q ss_pred CCCCCCC-HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHhcCC
Q 022164 12 GVSPTAS-EAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGK 72 (301)
Q Consensus 12 gv~~~as-~~eIkkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~~g~ 72 (301)
|++|+.. ..++-+.++.......++..+ +.|..|.+-| +.||.-+..||++|.
T Consensus 71 g~~p~s~eaq~l~~~h~~~l~~~~~~~s~------e~~~~L~~mY--v~D~rF~~~~d~~~~ 124 (143)
T 1ny9_A 71 GEPADSEGAMDAAEDHRQGIARNHYDCGY------EMHTCLGEMY--VSDERFTRNIDAAKP 124 (143)
T ss_dssp TCCTTCHHHHHHHHHHHHHHHHHSSCCCH------HHHHHHHHHT--TSTHHHHHHHGGGST
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHH--hcCHHHHHhHcccCh
Confidence 4545432 333555566554444555432 5677777776 378888888888764
No 37
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=35.45 E-value=85 Score=22.51 Aligned_cols=54 Identities=7% Similarity=0.160 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHHHcCCh-hHHHHHHhc
Q 022164 16 TASEAEIKKAYYIKARKVHPDKNPNDP--LAAQNFQVLGEAYQVLSDP-AQRQAYDAY 70 (301)
Q Consensus 16 ~as~~eIkkayr~la~~~HPDkn~~~~--~a~~~f~~i~~AY~vLsdp-~~R~~YD~~ 70 (301)
..-...++.+|+.+.+...|...+... .+...|..-. +|..+.++ .++..|+.|
T Consensus 5 ~~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeY 61 (77)
T 2cqn_A 5 SSGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDF 61 (77)
T ss_dssp CCSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHH
Confidence 344667899999998888788776554 3555665555 79999775 444555554
No 38
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=24.05 E-value=88 Score=21.09 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHH
Q 022164 23 KKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYD 68 (301)
Q Consensus 23 kkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD 68 (301)
.+.+|...+.-||+... .+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLHN-----AELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSCH-----HHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 45667777778888652 467788999999999766554433
No 39
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=23.66 E-value=1.5e+02 Score=20.22 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHH
Q 022164 23 KKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYD 68 (301)
Q Consensus 23 kkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD 68 (301)
.+.+|...+.-||+.+.. +..+.|.+.|.-|++.++....+
T Consensus 16 ~~~~r~~~~~~~p~~~~~-----eisk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS-----EISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS-----HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCHH-----HHHHHHHhHHHhCCHHHHHHHHH
Confidence 455666677779987643 56688999999998665544433
No 40
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=21.46 E-value=1.6e+02 Score=20.50 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 022164 23 KKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDA 69 (301)
Q Consensus 23 kkayr~la~~~HPDkn~~~~~a~~~f~~i~~AY~vLsdp~~R~~YD~ 69 (301)
.+.+|...+.-||+.+.. +..+.|.+.|.-|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~~~-----eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDNR-----GATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSSCTT-----HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHH-----HHHHHHHHHHhhCCHHHHHHHHHH
Confidence 455677777789997643 567789999999997665444443
No 41
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=20.37 E-value=57 Score=26.26 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=28.2
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 022164 6 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDK 37 (301)
Q Consensus 6 ~~Y~iLgv~~~as~~eIkkayr~la~~~HPDk 37 (301)
-++..|.|....+.++++++-..+..++||+-
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 44678888889999999999999999999984
Done!