BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022165
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNG|A Chain A, X-ray Structure Of Fully Glycosylated Bifunctional
Nuclease Tbn1 From Solanum Lycopersicum (tomato)
Length = 277
Score = 462 bits (1190), Expect = e-131, Method: Compositional matrix adjust.
Identities = 206/271 (76%), Positives = 239/271 (88%)
Query: 26 WSKEGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVWPDQVRHWYRYRWTSPLH 85
WSKEGH+MTCRIAQ LL +AAHAV+ LLP++VNGDLSALCVWPDQVRHWY+Y+WTSPLH
Sbjct: 1 WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60
Query: 86 FIDTPDDACTYEFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYREGSSDRRHNMTEALLFL 145
FIDTPD AC +++ RDCHD HG K+MC+ GAI+NFT+QL HYREG+SDRR+NMTEALLFL
Sbjct: 61 FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQLSHYREGTSDRRYNMTEALLFL 120
Query: 146 SHFMGDVHQPMHVGFTSDEGGNTIELRWFRHKSNLHHVWDREIILTALADYYDKDTELLL 205
SHFMGD+HQPMHVGFTSD GGN+I+LRWFRHKSNLHHVWDREIILTA DYY KD LL
Sbjct: 121 SHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLLE 180
Query: 206 QDIVANFTDGVWHDDVSSWKDCDNLMKCPNKYATESINMACKWGYKGVTPGETLADDYFN 265
+DI NFTDG+W DD++SW++C N+ C NK+ATESIN+ACKWGYKGV GETL+DDYFN
Sbjct: 181 EDIEGNFTDGIWSDDLASWRECGNVFSCVNKFATESINIACKWGYKGVEAGETLSDDYFN 240
Query: 266 SRMPIVMKRIAQGGIRLAMFLNRIFSDSDEE 296
SR+PIVMKR+AQGGIRLAM LN +F S +E
Sbjct: 241 SRLPIVMKRVAQGGIRLAMLLNNVFGASQQE 271
>pdb|4DJ4|A Chain A, X-ray Structure Of Mutant N211d Of Bifunctional Nuclease
Tbn1 From Solanum Lycopersicum (tomato)
pdb|4DJ4|B Chain B, X-ray Structure Of Mutant N211d Of Bifunctional Nuclease
Tbn1 From Solanum Lycopersicum (tomato)
Length = 277
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 205/271 (75%), Positives = 239/271 (88%)
Query: 26 WSKEGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVWPDQVRHWYRYRWTSPLH 85
WSKEGH+MTCRIAQ LL +AAHAV+ LLP++VNGDLSALCVWPDQVRHWY+Y+WTSPLH
Sbjct: 1 WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60
Query: 86 FIDTPDDACTYEFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYREGSSDRRHNMTEALLFL 145
FIDTPD AC +++ RDCHD HG K+MC+ GAI+NFT+QL HYREG+SDRR+NMTEALLFL
Sbjct: 61 FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQLSHYREGTSDRRYNMTEALLFL 120
Query: 146 SHFMGDVHQPMHVGFTSDEGGNTIELRWFRHKSNLHHVWDREIILTALADYYDKDTELLL 205
SHFMGD+HQPMHVGFTSD GGN+I+LRWFRHKSNLHHVWDREIILTA DYY KD LL
Sbjct: 121 SHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLLE 180
Query: 206 QDIVANFTDGVWHDDVSSWKDCDNLMKCPNKYATESINMACKWGYKGVTPGETLADDYFN 265
+DI +FTDG+W DD++SW++C N+ C NK+ATESIN+ACKWGYKGV GETL+DDYFN
Sbjct: 181 EDIEGDFTDGIWSDDLASWRECGNVFSCVNKFATESINIACKWGYKGVEAGETLSDDYFN 240
Query: 266 SRMPIVMKRIAQGGIRLAMFLNRIFSDSDEE 296
SR+PIVMKR+AQGGIRLAM LN +F S +E
Sbjct: 241 SRLPIVMKRVAQGGIRLAMLLNNVFGASQQE 271
>pdb|1AK0|A Chain A, P1 Nuclease In Complex With A Substrate Analog
Length = 270
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 29/278 (10%)
Query: 26 WSKEGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVWPDQVRHWYRYRWTSPLH 85
W GH +AQ + P+AA + +L + L+++ W D+ R +W++ LH
Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 86 FIDTPDDA---CTYEFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYREGSSDRRHNMTEAL 142
FID D+ C ++ RDC + C + AI N+T ++ SS N EAL
Sbjct: 61 FIDAEDNPPTNCNVDYERDC-----GSSGCSISAIANYTQRV----SDSSLSSENHAEAL 111
Query: 143 LFLSHFMGDVHQPMHVGFTSDE----GGNTIELRWFRHKSNLHHVWDREIILTALADYYD 198
FL HF+GD+ QP+H DE GGN I + + + NLH WD + + +
Sbjct: 112 RFLVHFIGDMTQPLH-----DEAYAVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHAL 166
Query: 199 KDTELLLQDIVANFTDGVWHDDVSSWKDCDNL---MKCPNKYATESINMACKW----GYK 251
D E + +V N G + W DN+ + ++A+++ + C G
Sbjct: 167 SDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAA 226
Query: 252 GVTPGETLADDYFNSRMPIVMKRIAQGGIRLAMFLNRI 289
+ G+ L Y++S + + +IA+GG RLA ++N I
Sbjct: 227 ALQTGD-LYPTYYDSVIDTIELQIAKGGYRLANWINEI 263
>pdb|1P5X|A Chain A, Structure Of The D55n Mutant Of Phospholipase C From
Bacillus Cereus
pdb|1P6D|A Chain A, Structure Of The D55n Mutant Of Phospholipase C From
Bacillus Cereus In Complex With (3s)-3,4,di-n-
Hexanoyloxybutyl-1-phosphocholine
pdb|1P6E|A Chain A, Structure Of The D55n Mutant Of Phospholipase C From
Bacillus Cereus In Complex With 1,2-di-n-pentanoyl-sn-
Glycero-3-dithiophosphocholine
Length = 245
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 21/83 (25%)
Query: 81 TSPLHFIDTPDDACTY-EFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYREGSSDRRHNMT 139
T HF D PD+ TY F++ +T G K + G S + +M
Sbjct: 65 TFASHFYD-PDNGKTYIPFAKQAKET-GAKYFKLAG---------------ESYKNKDMK 107
Query: 140 EALLFLS---HFMGDVHQPMHVG 159
+A +L H++GDV+QPMH
Sbjct: 108 QAFFYLGLSLHYLGDVNQPMHAA 130
>pdb|2FFZ|A Chain A, Structural Studies Examining The Substrate Specificity
Profiles Of Pc-Plcbc Protein Variants
Length = 245
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 21/83 (25%)
Query: 81 TSPLHFIDTPDDACTY-EFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYREGSSDRRHNMT 139
T HF D PD+ TY F++ +T G K + G S + +M
Sbjct: 65 TFASHFYD-PDNGKTYIPFAKQAKET-GAKYFKLAG---------------ESYKNKDMK 107
Query: 140 EALLFLS---HFMGDVHQPMHVG 159
+A +L H++GDV+QPMH
Sbjct: 108 QAFFYLGLSLHYLGDVNQPMHAA 130
>pdb|1AH7|A Chain A, Phospholipase C From Bacillus Cereus
Length = 245
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 21/83 (25%)
Query: 81 TSPLHFIDTPDDACTY-EFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYREGSSDRRHNMT 139
T HF D PD+ TY F++ +T G K + G S + +M
Sbjct: 65 TFASHFYD-PDNGKTYIPFAKQAKET-GAKYFKLAG---------------ESYKNKDMK 107
Query: 140 EALLFLS---HFMGDVHQPMHVG 159
+A +L H++GDV+QPMH
Sbjct: 108 QAFFYLGLSLHYLGDVNQPMHAA 130
>pdb|2HUC|A Chain A, Structural Studies Examining The Substrate Specificity
Profiles Of Pc-Plcbc Protein Variants
Length = 245
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 21/83 (25%)
Query: 81 TSPLHFIDTPDDACTY-EFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYREGSSDRRHNMT 139
T HF D PD+ TY F++ +T G K + G S + +M
Sbjct: 65 TFASHFYD-PDNGKTYIPFAKQAKET-GAKYFKLAG---------------ESYKNKDMK 107
Query: 140 EALLFLS---HFMGDVHQPMHVG 159
+A +L H++GDV+QPMH
Sbjct: 108 QAFFYLGLSLHYLGDVNQPMHAA 130
>pdb|2FGN|A Chain A, Structural Studies Examining The Substrate Specificity
Profiles Of Pc-Plcbc Protein Variants
Length = 245
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 21/79 (26%)
Query: 85 HFIDTPDDACTY-EFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYREGSSDRRHNMTEALL 143
HF D PD+ TY F++ +T G K + G S + +M +A
Sbjct: 69 HFYD-PDNGKTYIPFAKQAKET-GAKYFKLAG---------------ESYKNKDMKQAFF 111
Query: 144 FLS---HFMGDVHQPMHVG 159
+L H++GDV+QPMH
Sbjct: 112 YLGLSLHYLGDVNQPMHAA 130
>pdb|1VBG|A Chain A, Pyruvate Phosphate Dikinase From Maize
pdb|1VBH|A Chain A, Pyruvate Phosphate Dikinase With Bound Mg-Pep From Maize
Length = 876
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 51 ENLLPQHVNGDLSALCVWPDQVRHWYRYRWTSPLHFIDTPDDACT 95
+ L P ++GDL W D VR L DTPDDA T
Sbjct: 513 QPLSPPALSGDLGTFMAWVDDVRKL------KVLANADTPDDALT 551
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 151 DVHQPMHVGFTSDEGGNTIELRWFRHKSNLHH 182
++H P +G +S+ G N E+++F K+ L
Sbjct: 265 EIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQ 296
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 29 EGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVWPDQVRHWYRYRWTSPLHFID 88
EG + CR+A+ +L+ A + + ++ + C+ R + SPL++ +
Sbjct: 57 EGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIA--------RNCYPSPLNYYN 108
Query: 89 TPDDACTYEFSRDCHDTHGKKNM 111
P CT CH ++ +
Sbjct: 109 FPKSCCTSVNEVICHGIPDRRPL 131
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 29 EGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVWPDQVRHWYRYRWTSPLHFID 88
EG + CR+A+ +L+ A + + ++ + C+ R + SPL++ +
Sbjct: 82 EGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIA--------RNCYPSPLNYYN 133
Query: 89 TPDDACTYEFSRDCHDTHGKKNM 111
P CT CH ++ +
Sbjct: 134 FPKSCCTSVNEVICHGIPDRRPL 156
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 29 EGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVWPDQVRHWYRYRWTSPLHFID 88
EG + CR+A+ +L+ A + + ++ + C+ R + SPL++ +
Sbjct: 58 EGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIA--------RNCYPSPLNYYN 109
Query: 89 TPDDACTYEFSRDCHDTHGKKNM 111
P CT CH ++ +
Sbjct: 110 FPKSCCTSVNEVICHGIPDRRPL 132
>pdb|3CHJ|A Chain A, Crystal Structure Of Alpha-14 Giardin
pdb|3CHK|A Chain A, Calcium Bound Structure Of Alpha-14 Giardin
pdb|3CHL|A Chain A, Crystal Structure Of Alpha-14 Giardin With Magnesium Bound
Length = 337
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 129 EGSSDRRHNMTEALLFL-SHFMGDVHQPMHVGFTSDEGGNTIELRWFRHKSNLHHVWDRE 187
+G+ + + LL + +H + ++ Q ++ +D G+ + R ++W +
Sbjct: 95 KGAGTDEKCLVDVLLTIETHEVREIRQ-LYYQLYNDSLGDVV-----RKDCGDKYMWAKL 148
Query: 188 IILTALADYYDKDTELLLQDIV----ANFTDGVWHDDVSSW 224
I A D +DT L +D+V A T GV D+VS+W
Sbjct: 149 INAVATGDRIPRDTHELEEDLVLVRKAIETKGVKKDEVSTW 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,764,129
Number of Sequences: 62578
Number of extensions: 420421
Number of successful extensions: 763
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 15
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)