BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022165
(301 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SXA6|ENDO1_ARATH Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1
Length = 305
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 202/273 (73%), Positives = 241/273 (88%)
Query: 20 VPGAWGWSKEGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVWPDQVRHWYRYR 79
V WSKEGHI+TCRIAQ+LLE AH VENLLP +V GDLSALCVWPDQ+RHWY+YR
Sbjct: 23 VSSVRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYR 82
Query: 80 WTSPLHFIDTPDDACTYEFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYREGSSDRRHNMT 139
WTS LH+IDTPD AC+YE+SRDCHD HG K+MC+ GAI+NFTSQL HY EG+SDRR+NMT
Sbjct: 83 WTSHLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQHYGEGTSDRRYNMT 142
Query: 140 EALLFLSHFMGDVHQPMHVGFTSDEGGNTIELRWFRHKSNLHHVWDREIILTALADYYDK 199
EALLFLSHFMGD+HQPMHVGFTSDEGGNTI+LRW++HKSNLHHVWDREIILTAL + YDK
Sbjct: 143 EALLFLSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYDK 202
Query: 200 DTELLLQDIVANFTDGVWHDDVSSWKDCDNLMKCPNKYATESINMACKWGYKGVTPGETL 259
+ +LL +D+ N T+G+WHDD+SSW +C++L+ CP+KYA+ESI +ACKWGYKGV GETL
Sbjct: 203 NLDLLQEDLEKNITNGLWHDDLSSWTECNDLIACPHKYASESIKLACKWGYKGVKSGETL 262
Query: 260 ADDYFNSRMPIVMKRIAQGGIRLAMFLNRIFSD 292
+++YFN+R+PIVMKRI QGG+RLAM LNR+FSD
Sbjct: 263 SEEYFNTRLPIVMKRIVQGGVRLAMILNRVFSD 295
>sp|F4JJL0|ENDO4_ARATH Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1
Length = 299
Score = 339 bits (870), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 156/281 (55%), Positives = 205/281 (72%), Gaps = 3/281 (1%)
Query: 13 VSLASVLVPGAWGWSKEGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVWPDQV 72
V + + L+ GA W KEGH C+IA+S E + AV+ LLP+ +GDL+++C WPD++
Sbjct: 12 VLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSWPDEI 71
Query: 73 RHWYRYRWTSPLHFIDTPDDACTYEFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYREGSS 132
+H +++RWTSPLH++DTPD C YE+ RDCHDTH ++ C+ GAI N+T QL+ E S
Sbjct: 72 KHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSASENSD 131
Query: 133 DRRH-NMTEALLFLSHFMGDVHQPMHVGFTSDEGGNTIELRWFRHKSNLHHVWDREIILT 191
H N+TEAL+FLSHF+GD+HQP+HVGF DEGGNTI +RW+R K+NLHHVWD II +
Sbjct: 132 TIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNMIIES 191
Query: 192 ALADYYDKDTELLLQDIVANFTDGVWHDDVSSWKDCD-NLMKCPNKYATESINMACKWGY 250
AL YY+K L+++ + AN T+ W +DV W+ C N CPN YA+ESIN+ACK+ Y
Sbjct: 192 ALKTYYNKSLPLMIEALQANLTND-WSNDVPLWESCQLNQTACPNPYASESINLACKYAY 250
Query: 251 KGVTPGETLADDYFNSRMPIVMKRIAQGGIRLAMFLNRIFS 291
+ TPG TL DDYF SR+PIV KR+AQGGIRLA LNRIFS
Sbjct: 251 RNATPGTTLGDDYFLSRLPIVEKRLAQGGIRLAATLNRIFS 291
>sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=2 SV=1
Length = 290
Score = 320 bits (820), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 147/272 (54%), Positives = 195/272 (71%), Gaps = 5/272 (1%)
Query: 20 VPGAWGWSKEGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVWPDQVRHWYRYR 79
P GW KEGH + C+IAQ+ L+ AA AV+ LLP+ GDLS+LC+W D+V+ +RY
Sbjct: 22 APNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVK--FRYH 79
Query: 80 WTSPLHFIDTPDDACTYEFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYR-EGSSDRRHNM 138
W+SPLH+I+TPD AC+Y+++RDC D G+K C+ GAI N+T+QLL Y+ SS ++N+
Sbjct: 80 WSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQYNL 138
Query: 139 TEALLFLSHFMGDVHQPMHVGFTSDEGGNTIELRWFRHKSNLHHVWDREIILTALADYYD 198
TEALLF+SHFMGD+HQP+HV + SD+GGNTIE+ W+ K+NLHH+WD II TA AD Y+
Sbjct: 139 TEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADLYN 198
Query: 199 KDTELLLQDIVANFTDGVWHDDVSSWKDCDNLMKCPNKYATESINMACKWGYKGVTPGET 258
E ++ + N T W D V W+ C CP+ YA+E I AC W YKGVT G+T
Sbjct: 199 SALEGMVDALKKNITTE-WADQVKRWETCTKKTACPDIYASEGIQAACDWAYKGVTEGDT 257
Query: 259 LADDYFNSRMPIVMKRIAQGGIRLAMFLNRIF 290
L D+YF SR+PIV +R+AQGG+RLA LNRIF
Sbjct: 258 LEDEYFYSRLPIVYQRLAQGGVRLAATLNRIF 289
>sp|F4JJL3|ENDO5_ARATH Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1
Length = 296
Score = 305 bits (781), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 199/286 (69%), Gaps = 4/286 (1%)
Query: 9 FVLFVSLASVLVPGAWGWSKEGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGD-LSALCV 67
+++ V + + LV GA W K+GH C++A+ E D AV+ LLP+ V+G L+ C
Sbjct: 4 WIVSVLVLTHLVHGALCWGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFCS 63
Query: 68 WPDQVRHWYRYRWTSPLHFIDTPDDACTYEFSRDCHDTHGKKNMCIVGAIRNFTSQLLHY 127
WPD+++ +++WTS LH+++TP+ C YE+ RDCHDTH K+ C+ GAI N+T+QL+
Sbjct: 64 WPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMSA 123
Query: 128 REGSSDRRH-NMTEALLFLSHFMGDVHQPMHVGFTSDEGGNTIELRWFRHKSNLHHVWDR 186
E S + H N+TEALLFLSH+MGDVHQP+H GF D GGNTI + W+ +KSNLHHVWD
Sbjct: 124 SENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWDN 183
Query: 187 EIILTALADYYDKDTELLLQDIVANFTDGVWHDDVSSWKDCDNLMK-CPNKYATESINMA 245
II +AL YY+ ++Q + A +G W +DV SWK C K CPN YA+ESI++A
Sbjct: 184 MIIDSALETYYNSSLPHMIQALQAKLKNG-WSNDVPSWKSCHFHQKACPNLYASESIDLA 242
Query: 246 CKWGYKGVTPGETLADDYFNSRMPIVMKRIAQGGIRLAMFLNRIFS 291
CK+ Y+ TPG TL D+YF SR+P+V KR+AQGGIRLA LNRIFS
Sbjct: 243 CKYAYRNATPGTTLGDEYFLSRLPVVEKRLAQGGIRLAATLNRIFS 288
>sp|Q8LDW6|ENDO3_ARATH Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1
Length = 294
Score = 295 bits (755), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/285 (49%), Positives = 191/285 (67%), Gaps = 8/285 (2%)
Query: 9 FVLFVSLASVLVPGAWGWSKEGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVW 68
+++ + + + LV GA W GH C+IAQS E D AV+ LLP+ NG+L+A+C W
Sbjct: 8 WIVSILVLTQLVNGALCWGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCSW 67
Query: 69 PDQVRHWYRYRWTSPLHFIDTPDDACTYEFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYR 128
PD+++ ++RWTS LHF DTPD C YE+SRDC K+ C+ GAI N+T+QL+
Sbjct: 68 PDEIKKLPQWRWTSALHFADTPDYKCNYEYSRDC-----PKDWCVTGAIFNYTNQLMSTS 122
Query: 129 EGSSDRRH-NMTEALLFLSHFMGDVHQPMHVGFTSDEGGNTIELRWFRHKSNLHHVWDRE 187
E S H N+TEAL+FLSH+MGD+HQP+H GF D GGN I++ W+ ++NLH VWD
Sbjct: 123 ENSQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDDM 182
Query: 188 IILTALADYYDKDTELLLQDIVANFTDGVWHDDVSSWKDCD-NLMKCPNKYATESINMAC 246
II +AL YY+ ++ ++ A +G W +DV SW+ C N CPN YA+ESI++AC
Sbjct: 183 IIESALETYYNSSLPRMIHELQAKLKNG-WSNDVPSWESCQLNQTACPNPYASESIDLAC 241
Query: 247 KWGYKGVTPGETLADDYFNSRMPIVMKRIAQGGIRLAMFLNRIFS 291
K+ Y+ T G TL D YF SR+P+V KR+AQGGIRLA LNRIFS
Sbjct: 242 KYAYRNATAGTTLGDYYFVSRLPVVEKRLAQGGIRLAGTLNRIFS 286
>sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1
Length = 270
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 131/278 (47%), Gaps = 29/278 (10%)
Query: 26 WSKEGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVWPDQVRHWYRYRWTSPLH 85
W GH +AQ + P+AA + +L + L+++ W D+ R +W++ LH
Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 86 FIDTPDDA---CTYEFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYREGSSDRRHNMTEAL 142
FID D+ C ++ RDC + C + AI N+T ++ SS N EAL
Sbjct: 61 FIDAEDNPPTNCNVDYERDC-----GSSGCSISAIANYTQRV----SDSSLSSENHAEAL 111
Query: 143 LFLSHFMGDVHQPMHVGFTSDE----GGNTIELRWFRHKSNLHHVWDREIILTALADYYD 198
FL HF+GD+ QP+H DE GGN I + + + NLH WD + + +
Sbjct: 112 RFLVHFIGDMTQPLH-----DEAYAVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHAL 166
Query: 199 KDTELLLQDIVANFTDGVWHDDVSSWKDCDNL---MKCPNKYATESINMACKW----GYK 251
D E + +V N G + + W DN+ + ++A+++ + C G
Sbjct: 167 SDAESWAKTLVQNIESGNYTAQATGWIKGDNISEPITTATRWASDANALVCTVVMPHGAA 226
Query: 252 GVTPGETLADDYFNSRMPIVMKRIAQGGIRLAMFLNRI 289
+ G+ L Y++S + + +IA+GG RLA ++N I
Sbjct: 227 ALQTGD-LYPTYYDSVIDTIELQIAKGGYRLANWINEI 263
>sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=nucS PE=1 SV=2
Length = 287
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 129/293 (44%), Gaps = 23/293 (7%)
Query: 10 VLFVSLASV-LVPGAWGWSKEGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVW 68
+L +S A++ L +GW GH IAQS + +N+L L+ + W
Sbjct: 4 LLPISAATLALAQLTYGWGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATW 63
Query: 69 PDQVRHWYRYRWTSPLHFIDT---PDDACTYEFSRDCHDTHGKKNMCIVGAIRNFTSQLL 125
D ++ ++ P HFID P +C ++ RDC C + AI+N+T+ LL
Sbjct: 64 ADTYKYTDAGEFSKPYHFIDAQDNPPQSCGVDYDRDCGSAG-----CSISAIQNYTNILL 118
Query: 126 HYREGSSDRRHNMTEALLFLSHFMGDVHQPMHVGFTSDEGGNTIELRWFRHKSNLHHVWD 185
GS AL F+ H +GD+HQP+H + GGN I++ + +NLHH+WD
Sbjct: 119 ESPNGS-----EALNALKFVVHIIGDIHQPLH-DENLEAGGNGIDVTYDGETTNLHHIWD 172
Query: 186 REIILTALADYYDKDTELLLQDIVANFTDGVWHDDVSSWKDCDNL---MKCPNKYATESI 242
+ A Y + + G + SW D ++ + +A ++
Sbjct: 173 TNMPEEAAGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDPVSTSMIWAADAN 232
Query: 243 NMACKW----GYKGVTPGETLADDYFNSRMPIVMKRIAQGGIRLAMFLNRIFS 291
C G + + L+ +Y++ P+ + IA+ G RLA +L+ I S
Sbjct: 233 TYVCSTVLDDGLAYINSTD-LSGEYYDKSQPVFEELIAKAGYRLAAWLDLIAS 284
>sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1
Length = 270
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 29/278 (10%)
Query: 26 WSKEGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVWPDQVRHWYRYRWTSPLH 85
W GH +AQ + P+AA + +L + L+++ W D+ R +W++ LH
Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 86 FIDTPDDA---CTYEFSRDCHDTHGKKNMCIVGAIRNFTSQLLHYREGSSDRRHNMTEAL 142
FID D+ C ++ RDC + C + AI N+T ++ SS N EAL
Sbjct: 61 FIDAEDNPPTNCNVDYERDC-----GSSGCSISAIANYTQRV----SDSSLSSENHAEAL 111
Query: 143 LFLSHFMGDVHQPMHVGFTSDE----GGNTIELRWFRHKSNLHHVWDREIILTALADYYD 198
FL HF+GD+ QP+H DE GGN I + + + NLH WD + + +
Sbjct: 112 RFLVHFIGDMTQPLH-----DEAYAVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHAL 166
Query: 199 KDTELLLQDIVANFTDGVWHDDVSSWKDCDNL---MKCPNKYATESINMACKW----GYK 251
D E + +V N G + W DN+ + ++A+++ + C G
Sbjct: 167 SDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAA 226
Query: 252 GVTPGETLADDYFNSRMPIVMKRIAQGGIRLAMFLNRI 289
+ G+ L Y++S + + +IA+GG RLA ++N I
Sbjct: 227 ALQTGD-LYPTYYDSVIDTIELQIAKGGYRLANWINEI 263
>sp|Q2NVU3|SECA_SODGM Protein translocase subunit SecA OS=Sodalis glossinidius (strain
morsitans) GN=secA PE=3 SV=1
Length = 902
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 172 RWFRHKSNLHHVWDREIILTALADYYDKDTELLLQDIVANFTDGVWHDDVSS-WKD 226
+W + LH RE +L + Y + E++ DI+ NF GV + S WK+
Sbjct: 722 QWLDDEPGLHEEILRERVLEQMLAQYQRKEEIVGSDIMRNFEKGVMLQTLDSLWKE 777
>sp|O04931|AGLU_BETVU Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1
Length = 913
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 246 CKWGYKGVTPGETLADDYFNSRMPI 270
C+WGY+ V ET+ D Y +R+P+
Sbjct: 327 CRWGYRDVNEIETVVDKYAEARIPL 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,317,047
Number of Sequences: 539616
Number of extensions: 5207634
Number of successful extensions: 9351
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9312
Number of HSP's gapped (non-prelim): 13
length of query: 301
length of database: 191,569,459
effective HSP length: 117
effective length of query: 184
effective length of database: 128,434,387
effective search space: 23631927208
effective search space used: 23631927208
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)