Query 022165
Match_columns 301
No_of_seqs 112 out of 521
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:31:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02265 S1-P1_nuclease: S1/P1 100.0 1.6E-68 3.4E-73 484.3 10.9 248 26-291 1-252 (252)
2 smart00770 Zn_dep_PLPC Zinc de 96.5 0.0046 9.9E-08 55.7 5.2 112 29-159 38-154 (241)
3 PRK11546 zraP zinc resistance 55.9 5.2 0.00011 33.2 0.8 50 4-55 6-57 (143)
4 KOG3189 Phosphomannomutase [Li 50.5 8.3 0.00018 34.0 1.2 39 135-183 191-236 (252)
5 PF13801 Metal_resist: Heavy-m 23.6 73 0.0016 24.2 2.6 23 33-55 33-55 (125)
6 PF06370 DUF1069: Protein of u 18.6 68 0.0015 26.4 1.4 15 145-159 112-126 (206)
7 PF13758 Prefoldin_3: Prefoldi 18.6 1E+02 0.0022 24.0 2.3 22 262-283 78-99 (99)
8 PRK12750 cpxP periplasmic repr 18.0 1.7E+02 0.0036 24.9 3.7 25 31-55 42-66 (170)
9 PF15312 JSRP: Junctional sarc 17.1 71 0.0015 22.8 1.0 17 2-18 7-23 (65)
10 COG0158 Fbp Fructose-1,6-bisph 17.1 60 0.0013 30.4 0.8 41 114-159 210-250 (326)
No 1
>PF02265 S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR003154 This family contains both S1 and P1 nucleases (3.1.30.1 from EC) which cleave RNA and single stranded DNA with no base specificity. ; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006308 DNA catabolic process; PDB: 1AK0_A.
Probab=100.00 E-value=1.6e-68 Score=484.31 Aligned_cols=248 Identities=35% Similarity=0.693 Sum_probs=192.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCCccccCcccccccccc-CCCCCCCCcccCCCC--CCCCcccCCCc
Q 022165 26 WSKEGHIMTCRIAQSLLEPDAAHAVENLLPQHVNGDLSALCVWPDQVRHWY-RYRWTSPLHFIDTPD--DACTYEFSRDC 102 (301)
Q Consensus 26 Wg~~GH~~Va~IA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~-~~~~~~~wHyid~p~--~~~~~~~~~dc 102 (301)
||..|||+||+||+++|+|+++++|++||+.....+|+++|+|||+||+.+ +++++.+|||+|+|. ..|.+...++|
T Consensus 1 Wg~~GH~~va~iA~~~L~~~~~~~v~~il~~~~~~~l~~~A~WaD~ir~~~~~~~~~~~wHyi~~~~~~~~~~~~~~~~~ 80 (252)
T PF02265_consen 1 WGAEGHRVVAEIAQRHLSPEARKKVDKILGGDSSESLAEAATWADDIRSDPAQYKWTAPWHYINQPDNKYPRDFQPARDC 80 (252)
T ss_dssp --HHHHHHHHHHHHHHS-HHHHHHHHHHHT--STTTTGGGTTHHHHHHT-STTTGGGGGGG------BTTB----HHHHS
T ss_pred CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCccccccHHHHHHhHHHhhccccccCcCCCccccCCccccccccccccccC
Confidence 999999999999999999999999999999655589999999999999854 689999999999998 44556555677
Q ss_pred cccCCCCCCcHHHHHHHHHHHhcCCCCCCccccccHHHHHHHHHHHhccCCCCcc-ccCCCCCCCCcEEeccCCcccCch
Q 022165 103 HDTHGKKNMCIVGAIRNFTSQLLHYREGSSDRRHNMTEALLFLSHFMGDVHQPMH-VGFTSDEGGNTIELRWFRHKSNLH 181 (301)
Q Consensus 103 ~~~~~~~~~~~~~aI~~~~~~L~~~~~s~~~~~~~~~~aLk~LiHlvGDiHQPLH-~~~~~D~GGN~i~v~~~g~~~nLH 181 (301)
++ ++|++++|.+++++|++.+.+. .+++++|||||||||||||||| +++++|+|||+++|+++|+++|||
T Consensus 81 ~~-----~~~~~~ai~~~~~~L~~~~~~~----~~~~~aL~~LvH~vGDiHQPLH~~~~~~D~GGN~~~v~~~g~~~nLH 151 (252)
T PF02265_consen 81 PN-----GGCVVSAIKNYTSRLKDTSTSK----AERAFALKFLVHLVGDIHQPLHTVGRKGDRGGNDIKVKFNGKKTNLH 151 (252)
T ss_dssp -T-----T--HHHHHHHHHHHHT-TTS-H----HHHHHHHHHHHHHHHHTTSGGGG--H--HHHTTT-EEEETTEEEEHH
T ss_pred CC-----CCcHHHHHHHHHHHHhccCCCc----HHHHHHHHHHHHHhhhccCccccccccccCCCCeeEEEecCCcCcHH
Confidence 64 8999999999999999987663 3789999999999999999999 678999999999999999999999
Q ss_pred HHHhHhhHhHHhhccCCccHHHHHHHHHhhcCCCCcccccchhcccCCCCCChHHHHHHHHHHHhhhcCCCCCCCCCCCH
Q 022165 182 HVWDREIILTALADYYDKDTELLLQDIVANFTDGVWHDDVSSWKDCDNLMKCPNKYATESINMACKWGYKGVTPGETLAD 261 (301)
Q Consensus 182 ~vWDs~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~Wa~ES~~la~~~vY~~~~~~~~ls~ 261 (301)
++||++|++......+..++.++++.|.+.++.. ....|.. .+|.+|+.||++++|+++|+..+.+.+|++
T Consensus 152 ~~WD~~l~~~~~~~~~~~~~~~~a~~L~~~~~~~----~~~~~~~-----~~~~~Wa~ES~~la~~~~y~~~~~~~~l~~ 222 (252)
T PF02265_consen 152 SVWDSGLINYMIKNKYQSSWQEYADELDRKITKE----SFKSWQP-----GDPEDWANESHELACNIVYPGIKNGTELSD 222 (252)
T ss_dssp HHHHTHHHHHHHS--SHHHHHHHHHHHHHHHHH--------HHHH-----HHHHHHHHHHHHHHHHTTSTT-SGGGS-TT
T ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHhhccch----hhhhhhh-----hhHHHHHHHHHHHHHHHHhccCCCCCccCH
Confidence 9999999988766545557788999998777632 4556643 389999999999999999988888888999
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhhC
Q 022165 262 DYFNSRMPIVMKRIAQGGIRLAMFLNRIFS 291 (301)
Q Consensus 262 ~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~ 291 (301)
+|++++++++++||++||+|||.+||+||+
T Consensus 223 ~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~ 252 (252)
T PF02265_consen 223 EYYTKARPVAEEQLAKAGYRLAAVLNEIFD 252 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999985
No 2
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=96.47 E-value=0.0046 Score=55.68 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhcCCHH----HHHHHHhhCCCCCCCCccccCccccccccccCCCCCCCCcccCCCCCCCCcccCCCccc
Q 022165 29 EGHIMTCRIAQSLLEPD----AAHAVENLLPQHVNGDLSALCVWPDQVRHWYRYRWTSPLHFIDTPDDACTYEFSRDCHD 104 (301)
Q Consensus 29 ~GH~~Va~IA~~~L~~~----~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~p~~~~~~~~~~dc~~ 104 (301)
.-|..|..=|.+.|... ....| ++|... -..|..=.+|||.-.. .+. ..-+||.|... ..++-+.
T Consensus 38 ~tH~~I~~qAi~iL~nd~~~~~~~~~-~~l~~y-~~~l~~G~~~aD~~~~--~~~-~~~~HFydp~~-~~~yL~~----- 106 (241)
T smart00770 38 NTHLFIVNQALEILKNDNNKNEYKLV-EILKKN-YKELKLGSTYADYDNK--YYD-LSQDHFYDPDT-GKNYLPG----- 106 (241)
T ss_pred cHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHH-HHHHHcCCcccccCcc--ccc-cccccccCCCC-CCCCCCC-----
Confidence 66999999999999544 22211 233211 2256677899998552 233 33789998533 2332111
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCC-CCCCccccccHHHHHHHHHHHhccCCCCcccc
Q 022165 105 THGKKNMCIVGAIRNFTSQLLHY-REGSSDRRHNMTEALLFLSHFMGDVHQPMHVG 159 (301)
Q Consensus 105 ~~~~~~~~~~~aI~~~~~~L~~~-~~s~~~~~~~~~~aLk~LiHlvGDiHQPLH~~ 159 (301)
..........+.+.-... +.... ..--+.|-.-.|+++|+.||+|++
T Consensus 107 -----~~~A~~~~~ky~~~A~~~~~~g~~---~~A~~~LG~a~Hy~~D~~~P~Ha~ 154 (241)
T smart00770 107 -----FSNAKDTGRKYFKLALNEWKKGNY---KKAFFYLGRACHYLGDLSTPYHAN 154 (241)
T ss_pred -----CCcHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhcCCccccc
Confidence 122333433443333221 11111 012356777899999999999986
No 3
>PRK11546 zraP zinc resistance protein; Provisional
Probab=55.95 E-value=5.2 Score=33.19 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=31.5
Q ss_pred CchhHHHHHHHHHHhhccccccCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 022165 4 LCPLKFVLFVSLASVLVPGAWGWS--KEGHIMTCRIAQSLLEPDAAHAVENLLP 55 (301)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~a~AWg--~~GH~~Va~IA~~~L~~~~~~~v~~lL~ 55 (301)
.+.+.++.|+.+++ +.+.++||. -.||- -+.=.+..|||+..+++++|..
T Consensus 6 ~~~~~~~ala~~~~-~s~~a~A~~~~G~~~G-~~~~~~~~LT~EQQa~~q~I~~ 57 (143)
T PRK11546 6 KIALVLMALSALAM-GSGSAFAHHHWGGGHG-MWQQNAAPLTTEQQAAWQKIHN 57 (143)
T ss_pred hHHHHHHHHHHHHH-hhhHHHHhhccCCCCC-CCccccccCCHHHHHHHHHHHH
Confidence 44555566665555 455677662 12222 1244567899999999999976
No 4
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=50.52 E-value=8.3 Score=33.98 Aligned_cols=39 Identities=36% Similarity=0.540 Sum_probs=28.1
Q ss_pred cccHHHHHHHH-------HHHhccCCCCccccCCCCCCCCcEEeccCCcccCchHH
Q 022165 135 RHNMTEALLFL-------SHFMGDVHQPMHVGFTSDEGGNTIELRWFRHKSNLHHV 183 (301)
Q Consensus 135 ~~~~~~aLk~L-------iHlvGDiHQPLH~~~~~D~GGN~i~v~~~g~~~nLH~v 183 (301)
-|++.++|+.| |||+||.-.| |||+..+ |....+-=|+|
T Consensus 191 GWDKtyCLqhle~dgf~~IhFFGDkT~~---------GGNDyEI-f~dprtiGhsV 236 (252)
T KOG3189|consen 191 GWDKTYCLQHLEKDGFDTIHFFGDKTMP---------GGNDYEI-FADPRTIGHSV 236 (252)
T ss_pred CcchhHHHHHhhhcCCceEEEeccccCC---------CCCccee-eeCCccccccc
Confidence 78899999976 5677776555 8999988 44455555555
No 5
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=23.62 E-value=73 Score=24.19 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC
Q 022165 33 MTCRIAQSLLEPDAAHAVENLLP 55 (301)
Q Consensus 33 ~Va~IA~~~L~~~~~~~v~~lL~ 55 (301)
.........||++.+++|++++.
T Consensus 33 ~~~~~~~l~Lt~eQ~~~l~~~~~ 55 (125)
T PF13801_consen 33 HPMLADMLNLTPEQQAKLRALMD 55 (125)
T ss_dssp HHHHHHHS-TTHHHHHHHHHHHH
T ss_pred chhhhhhcCCCHHHHHHHHHHHH
Confidence 66677778999999999999976
No 6
>PF06370 DUF1069: Protein of unknown function (DUF1069); InterPro: IPR009421 This family consists of several Maize streak virus 21.7 kDa proteins. The function of this family is unknown.
Probab=18.58 E-value=68 Score=26.37 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=11.9
Q ss_pred HHHHhccCCCCcccc
Q 022165 145 LSHFMGDVHQPMHVG 159 (301)
Q Consensus 145 LiHlvGDiHQPLH~~ 159 (301)
|.---|=||||.|++
T Consensus 112 lsagsgvihqphhtg 126 (206)
T PF06370_consen 112 LSAGSGVIHQPHHTG 126 (206)
T ss_pred cccCCcceecCcccC
Confidence 444567899999997
No 7
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=18.56 E-value=1e+02 Score=23.97 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.2
Q ss_pred HHHhcHHHHHHHHHHHHHHHHH
Q 022165 262 DYFNSRMPIVMKRIAQGGIRLA 283 (301)
Q Consensus 262 ~Y~~~~~~~~~~ql~~AG~RLA 283 (301)
+|+.++...+++||..|=-|||
T Consensus 78 DYV~~Ni~tleKql~~aE~kla 99 (99)
T PF13758_consen 78 DYVQQNIETLEKQLEAAENKLA 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999988875
No 8
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=18.01 E-value=1.7e+02 Score=24.94 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC
Q 022165 31 HIMTCRIAQSLLEPDAAHAVENLLP 55 (301)
Q Consensus 31 H~~Va~IA~~~L~~~~~~~v~~lL~ 55 (301)
|..-..+..-.||++.+++|+.|..
T Consensus 42 ~~~~~m~~~L~LTdeQk~qik~i~~ 66 (170)
T PRK12750 42 GMDRGIMRQLDLTDAQKEQLKEMRE 66 (170)
T ss_pred cchhhhHhhCCCCHHHHHHHHHHHH
Confidence 4444566778899999999999875
No 9
>PF15312 JSRP: Junctional sarcoplasmic reticulum protein
Probab=17.11 E-value=71 Score=22.83 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=13.9
Q ss_pred CCCchhHHHHHHHHHHh
Q 022165 2 GGLCPLKFVLFVSLASV 18 (301)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (301)
+.++++.|+++++++++
T Consensus 7 ~~lTLNkCLvlAslVal 23 (65)
T PF15312_consen 7 GDLTLNKCLVLASLVAL 23 (65)
T ss_pred cccchhhHHHHHHHHHH
Confidence 56789999998888774
No 10
>COG0158 Fbp Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=17.06 E-value=60 Score=30.44 Aligned_cols=41 Identities=12% Similarity=0.349 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCCCCccccccHHHHHHHHHHHhccCCCCcccc
Q 022165 114 VGAIRNFTSQLLHYREGSSDRRHNMTEALLFLSHFMGDVHQPMHVG 159 (301)
Q Consensus 114 ~~aI~~~~~~L~~~~~s~~~~~~~~~~aLk~LiHlvGDiHQPLH~~ 159 (301)
..+++.|++.+......+ .+.+.+||+.-+|+|+|+=|==|
T Consensus 210 ~~~v~~yI~~~~~~~~~~-----~r~y~~RyigSmVADvHRiL~~G 250 (326)
T COG0158 210 EEGVKKYIKDCFAEDKGT-----RRPYNMRYIGSMVADVHRILLKG 250 (326)
T ss_pred cHHHHHHHHHHhccCCCc-----CCCcchhhHHHHHHHHHHHHHcC
Confidence 368888888887754332 26788999999999999988643
Done!