BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022166
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 71 WKEAIDKIY-VRKQIEHPVAQA--LASVLSENKISKGWLKRSVEA---RINDANREISDI 124
W+ ID Y R Q QA L S + G L R +E + + +E S++
Sbjct: 335 WEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEV 394
Query: 125 PEKIEDLEKYAEDT 138
+I+DLEKY EDT
Sbjct: 395 EGRIQDLEKYVEDT 408
>pdb|5HMG|B Chain B, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|D Chain D, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|F Chain F, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
Length = 175
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 71 WKEAIDKIY-VRKQIEHPVAQA--LASVLSENKISKGWLKRSVEA---RINDANREISDI 124
W+ ID Y R Q QA L S + G L R +E + + +E S++
Sbjct: 14 WEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEV 73
Query: 125 PEKIEDLEKYAEDT 138
+I+DLEKY EDT
Sbjct: 74 EGRIQDLEKYVEDT 87
>pdb|3SDY|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody Cr8020
Bound To The Influenza A H3 Hemagglutinin
Length = 176
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 71 WKEAIDKIY-VRKQIEHPVAQA--LASVLSENKISKGWLKRSVEA---RINDANREISDI 124
W+ ID Y R Q QA L S + G L R +E + + +E S++
Sbjct: 14 WEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEV 73
Query: 125 PEKIEDLEKYAEDT 138
+I+DLEKY EDT
Sbjct: 74 EGRIQDLEKYVEDT 87
>pdb|4GMS|B Chain B, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|D Chain D, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|F Chain F, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
Length = 176
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 71 WKEAIDKIY-VRKQIEHPVAQA--LASVLSENKISKGWLKRSVEA---RINDANREISDI 124
W+ ID Y R Q QA L S + G L R +E + + +E S++
Sbjct: 14 WEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEV 73
Query: 125 PEKIEDLEKYAEDT 138
+I+DLEKY EDT
Sbjct: 74 EGRIQDLEKYVEDT 87
>pdb|4FQY|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H3 Influenza Hemagglutinin
pdb|4FNK|B Chain B, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FNK|D Chain D, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FNK|F Chain F, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FQR|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|D Chain D, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|F Chain F, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|H Chain H, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|J Chain J, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|N Chain N, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|P Chain P, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|R Chain R, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|T Chain T, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|V Chain V, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|X Chain X, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
Length = 174
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 71 WKEAIDKIY-VRKQIEHPVAQA--LASVLSENKISKGWLKRSVEA---RINDANREISDI 124
W+ ID Y R Q QA L S + G L R +E + + +E S++
Sbjct: 14 WEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEV 73
Query: 125 PEKIEDLEKYAEDT 138
+I+DLEKY EDT
Sbjct: 74 EGRIQDLEKYVEDT 87
>pdb|3VUN|B Chain B, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|D Chain D, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|F Chain F, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group
Length = 175
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 71 WKEAIDKIY-VRKQIEHPVAQA--LASVLSENKISKGWLKRSVEA---RINDANREISDI 124
W+ ID Y R Q QA L S + G L R +E + + +E S++
Sbjct: 14 WEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEV 73
Query: 125 PEKIEDLEKYAEDT 138
+I+DLEKY EDT
Sbjct: 74 EGRIQDLEKYVEDT 87
>pdb|2HMG|B Chain B, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|D Chain D, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|F Chain F, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|B Chain B, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|D Chain D, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|F Chain F, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|B Chain B, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|D Chain D, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|F Chain F, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin
pdb|1QFU|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1EO8|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1KEN|B Chain B, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|D Chain D, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|F Chain F, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1HGG|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|3ZTJ|B Chain B, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|D Chain D, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|F Chain F, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|1HGF|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGF|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGF|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|2YPG|B Chain B, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|D Chain D, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|F Chain F, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|1HGI|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGI|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGI|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
Length = 175
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 71 WKEAIDKIY-VRKQIEHPVAQA--LASVLSENKISKGWLKRSVEA---RINDANREISDI 124
W+ ID Y R Q QA L S + G L R +E + + +E S++
Sbjct: 14 WEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEV 73
Query: 125 PEKIEDLEKYAEDT 138
+I+DLEKY EDT
Sbjct: 74 EGRIQDLEKYVEDT 87
>pdb|3EYM|B Chain B, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|D Chain D, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|F Chain F, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
Length = 172
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 71 WKEAIDKIY-VRKQIEHPVAQA--LASVLSENKISKGWLKRSVEA---RINDANREISDI 124
W+ ID Y R Q QA L S + G L R +E + + +E S++
Sbjct: 14 WEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEV 73
Query: 125 PEKIEDLEKYAEDT 138
+I+DLEKY EDT
Sbjct: 74 EGRIQDLEKYVEDT 87
>pdb|2YP7|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus
pdb|2YP8|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
Human Receptor Analogue 6sln
pdb|2YP9|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
Avian Receptor Analogue 3sln
Length = 503
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 71 WKEAIDKIY-VRKQIEHPVAQA--LASVLSENKISKGWLKR---SVEARINDANREISDI 124
W+ +D Y R Q + QA L S + G L R + + +E S++
Sbjct: 343 WEGMVDGWYGFRHQNSEGIGQAADLKSTQAAINQINGKLNRLIGKTNEKFHQIEKEFSEV 402
Query: 125 PEKIEDLEKYAEDT 138
+I+DLEKY EDT
Sbjct: 403 EGRIQDLEKYVEDT 416
>pdb|2YP2|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus
pdb|2YP3|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Human Receptor Analogue 6sln
pdb|2YP4|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YP5|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Avian Receptor Analogue 3sln
Length = 503
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 71 WKEAIDKIY-VRKQIEHPVAQA--LASVLSENKISKGWLKR---SVEARINDANREISDI 124
W+ +D Y R Q + QA L S + G L R + + +E S++
Sbjct: 343 WEGMVDGWYGFRHQNSEGIGQAADLKSTQAAINQINGKLNRLIGKTNEKFHQIEKEFSEV 402
Query: 125 PEKIEDLEKYAEDT 138
+I+DLEKY EDT
Sbjct: 403 EGRIQDLEKYVEDT 416
>pdb|1HTM|B Chain B, Structure Of Influenza Haemagglutinin At The Ph Of
Membrane Fusion
pdb|1HTM|D Chain D, Structure Of Influenza Haemagglutinin At The Ph Of
Membrane Fusion
pdb|1HTM|F Chain F, Structure Of Influenza Haemagglutinin At The Ph Of
Membrane Fusion
Length = 138
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 104 GWLKRSVEA---RINDANREISDIPEKIEDLEKYAEDT 138
G L R +E + + +E S++ +I+DLEKY EDT
Sbjct: 13 GKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDT 50
>pdb|1MQL|B Chain B, Bha Of Ukr63
pdb|1MQL|E Chain E, Bha Of Ukr63
pdb|1MQL|H Chain H, Bha Of Ukr63
pdb|1MQM|B Chain B, BhaLSTA
pdb|1MQM|E Chain E, BhaLSTA
pdb|1MQM|H Chain H, BhaLSTA
pdb|1MQN|B Chain B, BhaLSTC
pdb|1MQN|E Chain E, BhaLSTC
pdb|1MQN|H Chain H, BhaLSTC
Length = 221
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 71 WKEAIDKIY-VRKQIEHPVAQA--LASVLSE-NKISKGWLKRSVEA---RINDANREISD 123
W+ ID Y R Q QA L S + ++I++ L R +E + + +E S+
Sbjct: 14 WEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINRK-LNRVIEKTNEKFHQIEKEFSE 72
Query: 124 IPEKIEDLEKYAEDT 138
+ +I+DLEKY EDT
Sbjct: 73 VEGRIQDLEKYVEDT 87
>pdb|1QU1|A Chain A, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|B Chain B, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|C Chain C, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|D Chain D, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|E Chain E, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185)
Length = 155
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 104 GWLKRSVEA---RINDANREISDIPEKIEDLEKYAEDT 138
G L R +E + + +E S++ +I+DLEKY EDT
Sbjct: 20 GKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDT 57
>pdb|3HHS|A Chain A, Crystal Structure Of Manduca Sexta Prophenoloxidase
Length = 694
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 87 PVAQALASVLSENKISKGWLKRSVEARINDANREISDIPEKIEDLEKY 134
P+ +A L ++GW R R D R + + I+D+E+Y
Sbjct: 272 PIPEAYYPKLDSLTSARGWPPRQAGMRWQDLKRPVDGLNVTIDDMERY 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,003,110
Number of Sequences: 62578
Number of extensions: 278749
Number of successful extensions: 747
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 733
Number of HSP's gapped (non-prelim): 17
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)