Query 022166
Match_columns 301
No_of_seqs 129 out of 1109
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 15:00:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hd1_A Squalene synthase HPNC; 100.0 1.4E-63 4.8E-68 450.6 29.1 275 5-299 8-285 (294)
2 3acx_A Dehydrosqualene synthas 100.0 6.2E-62 2.1E-66 440.1 30.9 257 7-279 9-275 (293)
3 3vj8_A Squalene synthase; farn 100.0 7.8E-52 2.7E-56 380.1 20.7 273 6-300 7-302 (343)
4 2ihi_A Pyrophosphate synthase; 95.5 1.5 5.3E-05 40.2 20.0 144 105-252 186-385 (395)
5 2qis_A Farnesyl pyrophosphate 95.4 0.94 3.2E-05 41.3 17.3 144 105-252 184-363 (374)
6 3mzv_A Decaprenyl diphosphate 95.4 0.7 2.4E-05 41.6 16.2 135 105-246 147-315 (341)
7 3tc1_A Octaprenyl pyrophosphat 95.4 0.44 1.5E-05 42.5 14.5 136 105-246 130-293 (315)
8 3lmd_A Geranylgeranyl pyrophos 95.4 0.41 1.4E-05 43.5 14.5 134 105-246 168-334 (360)
9 3apz_A Geranyl diphosphate syn 94.8 1.2 3.9E-05 40.3 15.9 135 105-246 161-324 (348)
10 4dhd_A Polyprenyl synthetase; 94.7 1.1 3.6E-05 40.7 15.4 137 105-247 140-322 (358)
11 3ts7_A Geranyltranstransferase 94.7 0.4 1.4E-05 42.9 12.3 120 107-246 158-286 (324)
12 4f62_A Geranyltranstransferase 94.7 0.45 1.5E-05 42.5 12.6 118 108-245 152-278 (317)
13 3lsn_A Geranyltranstransferase 94.7 0.56 1.9E-05 41.6 13.0 118 108-245 153-279 (304)
14 3pko_A Geranylgeranyl pyrophos 94.6 0.76 2.6E-05 41.3 13.9 136 105-246 151-316 (334)
15 1uby_A FPS, farnesyl diphospha 94.5 2.4 8.2E-05 38.5 17.3 87 106-194 178-287 (367)
16 1rtr_A Geranyltranstransferase 94.5 0.62 2.1E-05 41.2 13.0 127 107-252 148-282 (301)
17 3oyr_A Trans-isoprenyl diphosp 94.5 1.3 4.3E-05 40.0 15.1 143 105-252 159-334 (345)
18 3lk5_A Geranylgeranyl pyrophos 94.4 1.7 5.7E-05 39.8 16.0 138 107-252 185-362 (380)
19 1v4e_A Octoprenyl-diphosphate 94.4 0.49 1.7E-05 41.8 12.1 86 105-194 135-234 (299)
20 1yhl_A Farnesyl pyrophosphate 94.3 2.9 9.9E-05 37.8 18.7 138 105-246 159-342 (362)
21 3p8r_A Geranyltranstransferase 94.3 0.58 2E-05 41.5 12.2 120 107-246 158-286 (302)
22 2q80_A Geranylgeranyl pyrophos 94.0 0.46 1.6E-05 42.0 11.0 135 105-246 119-282 (301)
23 3rmg_A Octaprenyl-diphosphate 94.0 1.3 4.5E-05 39.7 14.0 140 105-252 141-315 (334)
24 3p8l_A Geranyltranstransferase 93.9 0.53 1.8E-05 41.7 11.1 72 107-180 156-234 (302)
25 3ipi_A Geranyltranstransferase 93.8 0.65 2.2E-05 41.0 11.4 120 105-246 135-266 (295)
26 3nf2_A Putative polyprenyl syn 93.6 1.5 5E-05 39.7 13.8 145 104-252 150-333 (352)
27 3uca_A Geranyltranstransferase 93.5 0.47 1.6E-05 42.5 10.1 121 107-246 180-308 (324)
28 3m0g_A Farnesyl diphosphate sy 93.5 0.18 6E-06 44.7 7.2 113 107-247 147-274 (297)
29 2ftz_A Geranyltranstransferase 93.4 0.87 3E-05 39.9 11.6 121 106-245 143-267 (284)
30 1wmw_A Geranylgeranyl diphosph 93.3 3.2 0.00011 37.0 15.4 88 105-194 138-242 (330)
31 3dyh_A Farnesyl pyrophosphate 93.2 4.4 0.00015 37.0 16.5 88 106-195 188-309 (390)
32 3pde_A Farnesyl-diphosphate sy 93.1 0.94 3.2E-05 40.2 11.4 119 107-245 155-281 (309)
33 2h8o_A Geranyltranstransferase 93.1 0.54 1.8E-05 42.3 9.9 119 107-245 192-318 (335)
34 3lom_A Geranyltranstransferase 93.1 0.76 2.6E-05 40.9 10.8 121 107-246 158-287 (313)
35 1wy0_A Geranylgeranyl pyrophos 92.9 2.5 8.5E-05 37.9 14.2 139 105-246 145-324 (342)
36 2her_A Fragment, farnesyl pyro 92.5 2.5 8.4E-05 38.4 13.6 143 105-252 176-345 (368)
37 3kb9_A EPI-isozizaene synthase 92.3 6.3 0.00022 35.8 20.3 165 28-201 93-289 (382)
38 2j1p_A Geranylgeranyl pyrophos 90.6 3 0.0001 36.6 11.7 114 108-252 161-282 (293)
39 3aqb_B Component B of hexapren 90.5 1.2 4.2E-05 39.7 9.2 137 105-246 138-307 (325)
40 1rqj_A Geranyltranstransferase 88.9 2.5 8.6E-05 37.2 9.8 72 107-180 152-231 (299)
41 2e8v_A Geranylgeranyl pyrophos 87.9 1.4 4.6E-05 39.7 7.5 88 105-194 139-245 (340)
42 3npk_A Geranyltranstransferase 86.2 6.5 0.00022 34.4 10.8 120 106-246 144-270 (291)
43 3llw_A Geranyltranstransferase 84.6 8.4 0.00029 34.0 10.8 117 107-244 159-283 (311)
44 2q58_A Fragment, farnesyl pyro 82.0 29 0.00098 31.3 13.8 138 105-247 176-339 (368)
45 2azj_A Geranylgeranyl pyrophos 81.6 18 0.00063 31.4 11.7 107 106-245 144-261 (289)
46 1ps1_A Pentalenene synthase; a 80.5 29 0.00099 30.3 20.1 168 28-201 53-247 (337)
47 3v1v_A 2-MIB synthase, 2-methy 78.1 41 0.0014 31.0 13.5 169 28-201 162-367 (433)
48 3kra_B Geranyl diphosphate syn 76.0 7.2 0.00025 33.8 7.2 64 107-172 149-219 (274)
49 1di1_A Aristolochene synthase; 74.6 40 0.0014 28.8 19.4 187 28-237 49-264 (300)
50 3mav_A Farnesyl pyrophosphate 74.5 44 0.0015 30.3 12.5 117 127-247 231-379 (395)
51 3qkc_B Geranyl diphosphate syn 72.3 7.9 0.00027 33.5 6.6 62 107-171 151-219 (273)
52 1n1b_A (+)-bornyl diphosphate 72.2 69 0.0024 30.5 16.6 185 31-237 279-498 (549)
53 1yyq_A Trichodiene synthase; t 66.5 74 0.0025 28.6 17.0 165 28-201 73-254 (374)
54 2j5c_A 1,8-cineole synthase; t 55.6 1.4E+02 0.0049 28.4 15.0 106 38-150 309-435 (569)
55 2ong_A 4S-limonene synthase; m 45.5 2E+02 0.0069 27.1 18.4 185 31-237 273-491 (543)
56 3bny_A Aristolochene synthase; 43.5 1.6E+02 0.0053 25.3 16.3 164 28-201 63-255 (320)
57 3g4d_A (+)-delta-cadinene synt 43.0 2.3E+02 0.0077 27.0 17.5 110 37-153 292-422 (554)
58 3n0f_A Isoprene synthase; terp 42.0 2.3E+02 0.008 26.9 17.6 178 37-236 290-499 (555)
59 2p0t_A UPF0307 protein pspto_4 37.3 79 0.0027 25.3 6.2 67 63-140 103-170 (176)
60 3m00_A Aristolochene synthase; 34.7 3E+02 0.01 26.1 17.1 178 37-236 288-496 (550)
61 1yfb_A Transition state regula 34.0 20 0.00069 23.2 1.8 17 185-201 21-37 (59)
62 2l66_A SSO7C4, transcriptional 31.8 28 0.00096 21.7 2.2 17 185-201 11-27 (53)
63 2pmr_A Uncharacterized protein 31.7 1.3E+02 0.0044 21.1 5.8 52 221-274 31-82 (87)
64 1yyp_B DNA polymerase, POL; pr 20.5 35 0.0012 18.2 0.8 12 186-197 3-14 (26)
No 1
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=1.4e-63 Score=450.58 Aligned_cols=275 Identities=16% Similarity=0.194 Sum_probs=239.8
Q ss_pred cchHHHHHHHHHHHHhccCChhhHHhhcCChhhhhHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhcCCCC
Q 022166 5 SSSLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRKQI 84 (301)
Q Consensus 5 ~~~~~~~~~~c~~~~~~~~~s~~~a~~~lp~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~~g~~~ 84 (301)
.++++++|++|.++++++++|||++++|+|++.|+++++||+|||++|||+|+..++ +..+|+||++.++.++.|. +
T Consensus 8 p~~l~~~y~~C~~i~~~~~~sF~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~~~--~~~~L~~~~~~l~~~~~g~-~ 84 (294)
T 4hd1_A 8 PVELRGDFEVCRRLTRSHYENFSVVSLFVPRHLRPHFYSVYAFCRGVDDLGDEFAGD--RMAALDAYEEELRRAFAGE-A 84 (294)
T ss_dssp CGGGHHHHHHHHHHHHHHCTTHHHHTTTCCTTTHHHHHHHHHHHHHHHHTSTTCCSC--HHHHHHHHHHHHHHHHHTC-C
T ss_pred CHHHHHHHHHHHHHHHHhCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccCCChh--HHHHHHHHHHHHHHHhcCC-C
Confidence 457999999999999999999999999999999999999999999999999987544 4458999999999999987 5
Q ss_pred CCHHHHHHHHhHhhCCCCHHHHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhcCCCCccHHHHHHHH
Q 022166 85 EHPVAQALASVLSENKISKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHI 164 (301)
Q Consensus 85 ~~Pv~~aL~~~~~~~~l~~~~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~lg~~~~~~~~~a~~l 164 (301)
.||+..+|.++++.+++|.++|.+||+||++|++..+ |+|++||+.||++|||+||+|++.++|..+++..+.|.++
T Consensus 85 ~~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~---~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~~~~~~~~A~~l 161 (294)
T 4hd1_A 85 TTPAFRALQFTIATCNLPMEPFLRLIEANRRDQRKHT---YDTWEDLRDYCRYSADPVGRLVLGIFGCLDDERARLSDAT 161 (294)
T ss_dssp CSHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHCSB---CCSHHHHHHHHHHHTHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCC---CCCHHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7999999999999999999999999999999999998 9999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHHHhchhhhhcCCCcccccHHHHHhCCCc--hhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022166 165 GKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLL--VKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGA 242 (301)
Q Consensus 165 G~alql~nilRd~~~d~~~~~gR~yLP~d~l~~~gv~--~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~ 242 (301)
|.|+|+||||||+++|+. +||||||.|+|.+||++ ++..+. .+++++.++.+++++|+.||.+|+.++..
T Consensus 162 G~AlQltNilRDv~eD~~--~gR~YlP~~~l~~~gv~~~dl~~~~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 233 (294)
T 4hd1_A 162 CTALQVANHMQDIDRDLA--LGRIYVPRADLEQFGATLDDIRARR------ATDGVRRCIALEVDRAQALFDEGRRLESL 233 (294)
T ss_dssp HHHHHHHHHHHTHHHHHH--TTCBCSCHHHHHTTTCCHHHHHTTC------CCHHHHHHHHHHHHHHHHHHHHHGGGGGS
T ss_pred HHHHHHHHHHHhchhhhc--cCceeCCHHHHHHcCCCHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 99999999999999999 777776 77999999999999999999999999999
Q ss_pred CCCcchhHH-hhHhHHHHHHHHHHhCCCCCCCccccccccCCCchhhhHHHHHHHhhc
Q 022166 243 VPIEARPVL-LESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWRG 299 (301)
Q Consensus 243 lp~~~r~~~-~~~~~~~~~L~~l~~~~~~v~~~r~~~~~~~~~~~~~~~~~~w~~~~~ 299 (301)
+|++.+.++ ++..+|..+|++|++.|||+|++|++++ +. +++.++|.+|.+
T Consensus 234 lp~~~r~~~~~~~~~y~~il~~i~~~~~~~~~~R~~vs-----~~-~Kl~l~~~al~~ 285 (294)
T 4hd1_A 234 VPPRLARQLKLYRLGGEAILAAIRRQGYNPFAGRPVVS-----GK-QKLRIALSVLAG 285 (294)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTTTCCC---------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccC-----HH-HHHHHHHHHHHH
Confidence 999887655 5677999999999999999999999986 22 345556666654
No 2
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=100.00 E-value=6.2e-62 Score=440.11 Aligned_cols=257 Identities=15% Similarity=0.137 Sum_probs=244.4
Q ss_pred hHHHHHHHHHHHHhccCChhhHHhhcCChhhhhHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhcCCC---
Q 022166 7 SLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRKQ--- 83 (301)
Q Consensus 7 ~~~~~~~~c~~~~~~~~~s~~~a~~~lp~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~~g~~--- 83 (301)
.+++++++|.++++++|+|||++++++|++.|+++++||+|||++|+|+|+.++|.. |+||++.+++++.|.+
T Consensus 9 ~~~~~~~~c~~~~~~~s~sF~~a~~~Lp~~~R~av~alYaf~R~~Ddi~D~~~~~~~----L~~w~~~l~~~~~g~~~~~ 84 (293)
T 3acx_A 9 MMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQF----LNQIKEDIQSIEKYPYEYH 84 (293)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGGTSSTHH----HHHHHHHHHHHHHCTTSCC
T ss_pred hhHHHHHHHHHHHhccCCcHHHHHHhCCHHHHHHHHHHHHHHHHHhhHhccCCCHHH----HHHHHHHHHHHhCCCCccc
Confidence 478899999999999999999999999999999999999999999999999887765 9999999999998876
Q ss_pred ---CCCHHHHHHHHhHhhCCCCHHHHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhcCCCC-ccHHH
Q 022166 84 ---IEHPVAQALASVLSENKISKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKS-AAADH 159 (301)
Q Consensus 84 ---~~~Pv~~aL~~~~~~~~l~~~~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~lg~~~-~~~~~ 159 (301)
+.|||+.+|.++++.|++|+++|.+||+||++|++..+ |+|++||+.||++|||+||+|+++++|..+ ++..+
T Consensus 85 ~~~~~~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~---~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~~~~~~~ 161 (293)
T 3acx_A 85 HFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTM---FETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYD 161 (293)
T ss_dssp CCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTCCC---CSSHHHHHHHHHHHTHHHHHHHHHHHCSSCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCCC---CCCHHHHHHHHHHhhHHHHHHHHHHhCCCCcHHHHH
Confidence 78999999999999999999999999999999999988 999999999999999999999999999987 67889
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCCCcccccHHHHHhCCCc--hhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHH
Q 022166 160 AASHIGKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLL--VKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKAR 237 (301)
Q Consensus 160 ~a~~lG~alql~nilRd~~~d~~~~~gR~yLP~d~l~~~gv~--~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~ 237 (301)
.|.++|.|+|+||||||+++|+. +||||||.|+|.+||++ ++..+. .++++++++.+++++|+.||.+|+
T Consensus 162 ~A~~lG~AlQltNilRDv~eD~~--~gR~YLP~d~l~~~gv~~e~l~~~~------~~~~~~~~~~~l~~~A~~~~~~a~ 233 (293)
T 3acx_A 162 VARRLGESLQLINILRDVGEDFE--NERIYFSKQRLKQYEVDIAEVYQNG------VNNHYIDLWEYYAAIAEKDFRDVM 233 (293)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHH--TTCCCSCHHHHHHHTCCHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCcEEeCHHHHHHcCCCHHHhcccC------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999 777766 779999999999999999999999
Q ss_pred hhcCCCCCcchhHHhh-HhHHHHHHHHHHhCCCCCCCcccccc
Q 022166 238 ELSGAVPIEARPVLLE-SVPAQVLLDSLNRVQFDVFDPRLARG 279 (301)
Q Consensus 238 ~~~~~lp~~~r~~~~~-~~~~~~~L~~l~~~~~~v~~~r~~~~ 279 (301)
.+++.+|++.++++.+ ..+|..+|++|++.||+ |++|++++
T Consensus 234 ~~~~~lp~~~r~~~~~~~~~~~~iL~~i~~~~~~-~~~r~~v~ 275 (293)
T 3acx_A 234 DQIKVFSIEAQPIIELAARIYIEILDEVRQANYT-LHERVFVE 275 (293)
T ss_dssp HTGGGSCTTHHHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCC
T ss_pred HhHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCceeC
Confidence 9999999999887765 78999999999999999 99999986
No 3
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=100.00 E-value=7.8e-52 Score=380.14 Aligned_cols=273 Identities=10% Similarity=0.011 Sum_probs=232.6
Q ss_pred chHHHHHHHHHHHHhccCChhhHHhhcCChhhhhHHHHHHHHHHHHHHhcccCC-ChHHHHHHHHHHHHHHHHH---hcC
Q 022166 6 SSLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIAS-DPRIGLMRLVWWKEAIDKI---YVR 81 (301)
Q Consensus 6 ~~~~~~~~~c~~~~~~~~~s~~~a~~~lp~~~R~~~~alyaf~r~~d~i~D~~~-~~~~~~~rL~~w~~~l~~~---~~g 81 (301)
+.+.+++++|.++++++|+|||++++++|++.|++++++|+|||++|+|+|+.+ ++..+..+|+||++.+... +.|
T Consensus 7 ~~l~~~~~~C~~~l~~~srsF~la~~lLp~~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~ 86 (343)
T 3vj8_A 7 DSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFME 86 (343)
T ss_dssp -CCCHHHHHHHHHHHHHHGGGHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCC
T ss_pred ccchHHHHHHHHHHHhcCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcC
Confidence 357889999999999999999999999999999999999999999999999986 5667788999999998753 333
Q ss_pred C-CCCCHHHHHHHHhHhhC-CC-------CHHHHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhcCC
Q 022166 82 K-QIEHPVAQALASVLSEN-KI-------SKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGI 152 (301)
Q Consensus 82 ~-~~~~Pv~~aL~~~~~~~-~l-------~~~~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~lg~ 152 (301)
. +..++++..+..++..+ .+ ..+.+.+|++||++|++ .+ |+|++||+.||++|||+||+|+++++|.
T Consensus 87 ~~~~~~~ll~~~p~v~~~f~~l~~~~~~~i~~~~~~m~~gm~~dl~-~~---~~t~~~L~~Yc~~vAg~VG~l~~~l~~~ 162 (343)
T 3vj8_A 87 SKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLD-KH---VTSEQEWDKYCHYVAGLVGIGLSRLFSA 162 (343)
T ss_dssp CCSTTTHHHHTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHGGG-CC---CCSHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CChhhHHHHhcCcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc-CC---CCCHHHHHHHHHhCcHHHHHHHHHHhCC
Confidence 2 33445544443333221 22 33456779999999997 55 9999999999999999999999999987
Q ss_pred CCc------cHHHHHHHHHHHHHHHHHHHhchhhhhcCCCcccccHHHHHhCCCc--hhccCCccccccCcHHHHHHHHH
Q 022166 153 KSA------AADHAASHIGKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLL--VKEGGRSEIHLDSREGLCDAVFE 224 (301)
Q Consensus 153 ~~~------~~~~~a~~lG~alql~nilRd~~~d~~~~~gR~yLP~d~l~~~gv~--~l~~~~~~~~~~~~~~~~~~~~~ 224 (301)
.+. ...+.|.++|.|+|+||||||+++|+. +||||||.|+|.+||++ ++..+. .+++++.++.+
T Consensus 163 ~~~~~~~~~~~~~~A~~lG~AlQltNilRDv~eD~~--~gR~YlP~e~l~~~g~~~~dl~~~~------~~~~~~~~l~~ 234 (343)
T 3vj8_A 163 SEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQ--GGREFWPQEVWSRYVKKLGDFAKPE------NIDLAVQCLNE 234 (343)
T ss_dssp HTSSCHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHH--TTCCCSCHHHHTTTCSSGGGGGSGG------GHHHHHHHHHH
T ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHHHHhHHHHh--CCCeeCCHHHHHHcCCCHHHHhccc------CCHHHHHHHHH
Confidence 442 356899999999999999999999999 99999999999999999 677666 77899999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCc--chhHHhhHhHHHHHHHHHHhCCCCCCCccccccccCCCchhhhHHHHHHHhhcc
Q 022166 225 MASVANVHLLKARELSGAVPIE--ARPVLLESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWRGK 300 (301)
Q Consensus 225 ~~~~A~~~l~~a~~~~~~lp~~--~r~~~~~~~~~~~~L~~l~~~~~~v~~~r~~~~~~~~~~~~~~~~~~w~~~~~~ 300 (301)
++.+|+.||.+|..++..||.. .++++++..++..+|++|.+ +++||++++.++ +++++|.+|+..
T Consensus 235 l~~~A~~~~~~a~~~~~~L~~~~~~~~~~ip~~lA~~tL~~i~~-~~~v~~~rvkis---------r~~~~~l~~ra~ 302 (343)
T 3vj8_A 235 LITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYN-NQQVFKGAVKIR---------KGQAVTLMMDAT 302 (343)
T ss_dssp HHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTT-CGGGGTSCCCCC---------HHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHh-CCccccCCCccc---------HHHHHHHHHHhC
Confidence 9999999999999999999986 35688888999999999976 589999999997 788888888753
No 4
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=95.45 E-value=1.5 Score=40.20 Aligned_cols=144 Identities=9% Similarity=-0.042 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhccc-----------------cC---CCC---CCCCHHHHHHHHHhhhhHH-HHHHH---Hhc-CCCCc-
Q 022166 105 WLKRSVEARINDAN-----------------RE---ISD---IPEKIEDLEKYAEDTVSTL-LYTTL---QAG-GIKSA- 155 (301)
Q Consensus 105 ~l~~li~~~~~dl~-----------------~~---~~~---~~~t~~dL~~Y~~~~ag~v-g~l~~---~~l-g~~~~- 155 (301)
...+++.|+..|++ .. .+. .-.|++++..-+..-.|.+ ..+.+ .++ |.+++
T Consensus 186 ~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~ 265 (395)
T 2ihi_A 186 ATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDN 265 (395)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhh
Confidence 34788999999992 00 000 0247777766666655554 22222 223 44333
Q ss_pred ----cHHHHHHHHHHHHHHHHHHHhc----------hhhhhcCCCcccccHHHHHhCCCc---hhcc---CCccccccCc
Q 022166 156 ----AADHAASHIGKASGLLLLLKSL----------PYHASRNRHFSYIPAEVAANHGLL---VKEG---GRSEIHLDSR 215 (301)
Q Consensus 156 ----~~~~~a~~lG~alql~nilRd~----------~~d~~~~~gR~yLP~d~l~~~gv~---~l~~---~~~~~~~~~~ 215 (301)
....++.++|.|+|+.+=+-|+ +.|+. .|++-+|.=..-+..-. ..+. +..++. .-
T Consensus 266 ~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~--egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~--~~ 341 (395)
T 2ihi_A 266 LIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ--NNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLA--CV 341 (395)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTT--TTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhh--cCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHH--HH
Confidence 2567899999999999988887 56777 78998887543322111 1110 110000 00
Q ss_pred HHHHH------HHHHHHHHHHHHHHHHHhhcCCCCCc-chhHHh
Q 022166 216 EGLCD------AVFEMASVANVHLLKARELSGAVPIE-ARPVLL 252 (301)
Q Consensus 216 ~~~~~------~~~~~~~~A~~~l~~a~~~~~~lp~~-~r~~~~ 252 (301)
..+++ ++......++.++.+|...+..+|.. .+.++.
T Consensus 342 ~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~r~~L~ 385 (395)
T 2ihi_A 342 KVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLK 385 (395)
T ss_dssp HHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHH
T ss_pred HHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 11222 23445567888999999999989884 343443
No 5
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=95.44 E-value=0.94 Score=41.33 Aligned_cols=144 Identities=8% Similarity=-0.101 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhccccCCCCCC----CCHHHHHHHHHhhhhHH-HHHHHHh---c-C-CCCc---cHHHHHHHHHHHHHHH
Q 022166 105 WLKRSVEARINDANREISDIP----EKIEDLEKYAEDTVSTL-LYTTLQA---G-G-IKSA---AADHAASHIGKASGLL 171 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~----~t~~dL~~Y~~~~ag~v-g~l~~~~---l-g-~~~~---~~~~~a~~lG~alql~ 171 (301)
...+++.|+..|+........ .|++++..-...-.|.+ ..+.+.+ + | .+.+ ....++.++|.|+|+.
T Consensus 184 ~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~ 263 (374)
T 2qis_A 184 SSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQ 263 (374)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 347789999999975421001 48888888777777776 5444433 2 4 3322 3567899999999999
Q ss_pred HHHHhc----------hhhhhcCCCcccccHHHH-HhCCCc--hhcc---CCccccccCcHHHHHHHH------HHHHHH
Q 022166 172 LLLKSL----------PYHASRNRHFSYIPAEVA-ANHGLL--VKEG---GRSEIHLDSREGLCDAVF------EMASVA 229 (301)
Q Consensus 172 nilRd~----------~~d~~~~~gR~yLP~d~l-~~~gv~--~l~~---~~~~~~~~~~~~~~~~~~------~~~~~A 229 (301)
+=+-|+ +.|+. .|++-+|.=.. ++..-. ..+. +..++. .-+.+++++. .....+
T Consensus 264 DDiLD~~gd~~~~GK~g~Dl~--~gK~T~p~l~al~~a~~~~~~~l~~~~~~~~~~--~~~~v~~li~~~g~~~~~~~~~ 339 (374)
T 2qis_A 264 DDYLDLFGDPSVTGKIGTDIQ--DNKCSWLVVQCLQRATPEQYQILKENYGQKEAE--KVARVKALYEELDLPAVFLQYE 339 (374)
T ss_dssp HHHHHHHSCHHHHCSCCCTTT--TTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHH--HHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHccCChhhcCCchhHHH--cCCccHHHHHHHHhCCHHHHHHHHHHhcCCCHH--HHHHHHHHHHHCCcHHHHHHHH
Confidence 888886 35677 78898887543 222111 1111 110000 0112233322 123347
Q ss_pred HHHHHHHHhhcCCCCCcc-hhHHh
Q 022166 230 NVHLLKARELSGAVPIEA-RPVLL 252 (301)
Q Consensus 230 ~~~l~~a~~~~~~lp~~~-r~~~~ 252 (301)
+.++.++...+..+|... +.++.
T Consensus 340 ~~~~~~a~~~L~~lp~~~~k~~L~ 363 (374)
T 2qis_A 340 EDSYSHIMALIEQYAAPLPPAVFL 363 (374)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHH
Confidence 788888888877777543 44443
No 6
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=95.42 E-value=0.7 Score=41.63 Aligned_cols=135 Identities=12% Similarity=-0.020 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhc
Q 022166 105 WLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSL 177 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~ 177 (301)
.+.+++.|+..|+.... ..-.|++++..-++.-.|++..+.+.+. |.+++ ....++.++|.|+|+.+=+-|+
T Consensus 147 ~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~ 225 (341)
T 3mzv_A 147 ASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDY 225 (341)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678899999997652 1136888888777777777777665543 33332 3567899999999999888776
Q ss_pred -----------hhhhhcCCCcccccHHHHHhCCCc-------hhccCCccccccCcHHHHHH---------HHHHHHHHH
Q 022166 178 -----------PYHASRNRHFSYIPAEVAANHGLL-------VKEGGRSEIHLDSREGLCDA---------VFEMASVAN 230 (301)
Q Consensus 178 -----------~~d~~~~~gR~yLP~d~l~~~gv~-------~l~~~~~~~~~~~~~~~~~~---------~~~~~~~A~ 230 (301)
+.|+. .|++-+|.=..-+..-. .++..... ..+.+..+ +......++
T Consensus 226 ~~d~~~~GK~~g~Dl~--egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~----~~~~~~~i~~~l~~~ga~~~a~~~a~ 299 (341)
T 3mzv_A 226 GGKSAEIGKNTGDDFR--ERKLTMPVIKAVALADEAERAFWKRVIEKGDQ----QDGDLEHAMALMTKHGTLEATRLAAI 299 (341)
T ss_dssp ----------CCHHHH--TTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCC----CTTHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cCChhhcCCCCCcccc--cCchhHHHHHHHHhCCHhHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 56777 78999997654433221 11111100 11223222 344556789
Q ss_pred HHHHHHHhhcCCCCCc
Q 022166 231 VHLLKARELSGAVPIE 246 (301)
Q Consensus 231 ~~l~~a~~~~~~lp~~ 246 (301)
.+..+|.+.+..+|..
T Consensus 300 ~~~~~A~~~L~~lp~~ 315 (341)
T 3mzv_A 300 GWTDTARKALAKLPDH 315 (341)
T ss_dssp HHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999999875
No 7
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=95.37 E-value=0.44 Score=42.48 Aligned_cols=136 Identities=13% Similarity=-0.064 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCccHHHHHHHHHHHHHHHHHHHhc---
Q 022166 105 WLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSAAADHAASHIGKASGLLLLLKSL--- 177 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~~~~~~a~~lG~alql~nilRd~--- 177 (301)
.+.+++.|+..|+.... ..-.|++++..-++.-.|++..+.+.+. |.+......++.++|.|+|+.+=+-|+
T Consensus 130 ~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DD~ld~~~d 208 (315)
T 3tc1_A 130 AVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDAKIYADFGLNFGMAFQIIDDLLDITQD 208 (315)
T ss_dssp HHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 46778899999987552 1136888887777777777766665543 444334668999999999999988887
Q ss_pred --------hhhhhcCCCcccccHHHHHhCCCc---h----hccCCccccccCcHHHHHH------HHHHHHHHHHHHHHH
Q 022166 178 --------PYHASRNRHFSYIPAEVAANHGLL---V----KEGGRSEIHLDSREGLCDA------VFEMASVANVHLLKA 236 (301)
Q Consensus 178 --------~~d~~~~~gR~yLP~d~l~~~gv~---~----l~~~~~~~~~~~~~~~~~~------~~~~~~~A~~~l~~a 236 (301)
+.|+. .|++-+|.=..-+..-. . ++... ++. .-+.+.++ +......++.+..+|
T Consensus 209 ~~~~GK~~g~Dl~--egK~T~p~i~al~~~~~~~~~~L~~~l~~~-~~~--~~~~i~~li~~~ga~~~~~~~~~~~~~~A 283 (315)
T 3tc1_A 209 AKTLGKPNFSDFK--EGKTTLPYLLLYEKLNQHDQGLLISYFKQD-SHE--IIEWTKEKFKQYGIIEETLKTAQVYSKKA 283 (315)
T ss_dssp TTCCCCCCCCTGG--GTCCCHHHHHHHTTSCHHHHHHHHHTTTCC-CHH--HHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhhHHH--cCChhHHHHHHHHhCCHHHHHHHHHHHcCC-CHH--HHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 55777 78899997654443211 1 11111 000 01122222 344455688999999
Q ss_pred HhhcCCCCCc
Q 022166 237 RELSGAVPIE 246 (301)
Q Consensus 237 ~~~~~~lp~~ 246 (301)
.+.+..+|+.
T Consensus 284 ~~~L~~lp~s 293 (315)
T 3tc1_A 284 LEAIKGENNL 293 (315)
T ss_dssp HHHTTTTCCH
T ss_pred HHHHHhCCCc
Confidence 9999999875
No 8
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=95.36 E-value=0.41 Score=43.49 Aligned_cols=134 Identities=11% Similarity=0.038 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhc
Q 022166 105 WLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSL 177 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~ 177 (301)
.+.+|+.|+..|+..... ..|++++..-++.-.|++..+.+++- |.+.+ ....++.++|.|+|+.+=+-|+
T Consensus 168 ~~~~~~~GQ~ldl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~ 245 (360)
T 3lmd_A 168 TFGELVTGQMRETVGPRD--TDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDI 245 (360)
T ss_dssp HHHHHHHHHHHHHHCCTT--SCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467889999999987631 26777777666777777766665442 33332 3567899999999999877776
Q ss_pred -----------hhhhhcCCCcccccHHHHHhCCCc------hhccCCccccccCcHHHHHH---------HHHHHHHHHH
Q 022166 178 -----------PYHASRNRHFSYIPAEVAANHGLL------VKEGGRSEIHLDSREGLCDA---------VFEMASVANV 231 (301)
Q Consensus 178 -----------~~d~~~~~gR~yLP~d~l~~~gv~------~l~~~~~~~~~~~~~~~~~~---------~~~~~~~A~~ 231 (301)
+.|+. .|++-+|.=..-+.+-. .++.+... ..+.+..+ +..-...++.
T Consensus 246 ~~d~~~~GK~~g~Dl~--egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~----~~~~~~~~~~ll~~~gal~~a~~~a~~ 319 (360)
T 3lmd_A 246 FSETHESGKTPGTDLR--EGVFTLPVLYALREDTPVGAELRDILTGPLE----DDETVNHVLELLSQSGGRQAALDEVYR 319 (360)
T ss_dssp HC--------CCHHHH--HTCCCHHHHHHHHCCSHHHHHHHHHCSSCCC----SHHHHHHHHHHHHHSSHHHHHHHHHHH
T ss_pred cCChhhhCCCchhHHh--cCCchHHHHHHHHcCCchHHHHHHHHcCCCC----CHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 46777 78888997665444211 22222110 11223322 3455567899
Q ss_pred HHHHHHhhcCCCCCc
Q 022166 232 HLLKARELSGAVPIE 246 (301)
Q Consensus 232 ~l~~a~~~~~~lp~~ 246 (301)
+..+|.+.+..+|..
T Consensus 320 ~~~~A~~~L~~lp~~ 334 (360)
T 3lmd_A 320 YMDIANAELDRLPDS 334 (360)
T ss_dssp HHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999999875
No 9
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=94.85 E-value=1.2 Score=40.27 Aligned_cols=135 Identities=11% Similarity=0.024 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHh---c-CCCCc---cHHHHHHHHHHHHHHHHHHHhc
Q 022166 105 WLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQA---G-GIKSA---AADHAASHIGKASGLLLLLKSL 177 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~---l-g~~~~---~~~~~a~~lG~alql~nilRd~ 177 (301)
.+.+++.|+..|+.... ..-.|++++..-.+.-.|++..+.+.+ + |.+++ ....++.++|.|+|+.+=+-|+
T Consensus 161 ~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~ 239 (348)
T 3apz_A 161 AVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDF 239 (348)
T ss_dssp HHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45788999999997542 002477777666666666666655543 2 33322 2467889999999999888776
Q ss_pred -----------hhhhhcCCCcccccHHHHHhCCCc--hhccCCccccccCcHHH---HH------HHHHHHHHHHHHHHH
Q 022166 178 -----------PYHASRNRHFSYIPAEVAANHGLL--VKEGGRSEIHLDSREGL---CD------AVFEMASVANVHLLK 235 (301)
Q Consensus 178 -----------~~d~~~~~gR~yLP~d~l~~~gv~--~l~~~~~~~~~~~~~~~---~~------~~~~~~~~A~~~l~~ 235 (301)
+.|+. .|++-+|.=..-+..-. .++..... ..+.+ .+ .+......++.+..+
T Consensus 240 ~gd~~~~GK~~g~Dl~--egK~Tlp~l~al~~~~~~~~~l~~~~~----~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~ 313 (348)
T 3apz_A 240 TGTSASLGKGSLSDIR--HGVITAPILFAMEEFPQLREVVDQVEK----DPRNVDIALEYLGKSKGIQRARELAMEHANL 313 (348)
T ss_dssp HTTTTCTTCSCCHHHH--TTCCCHHHHHHHHHCTTHHHHHHTTTT----CTHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cCChhhcCCcchhhHh--CCChhHHHHHHHHcCHHHHHHHHhccC----CHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 35677 78899997553222111 22221110 11222 22 234445678899999
Q ss_pred HHhhcCCCCCc
Q 022166 236 ARELSGAVPIE 246 (301)
Q Consensus 236 a~~~~~~lp~~ 246 (301)
|.+.+..+|..
T Consensus 314 A~~~L~~l~~~ 324 (348)
T 3apz_A 314 AAAAIGSLPET 324 (348)
T ss_dssp HHHHHTTSCCC
T ss_pred HHHHHHcCCCC
Confidence 99999999875
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=94.73 E-value=1.1 Score=40.72 Aligned_cols=137 Identities=15% Similarity=-0.015 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhccccC-----------CCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHH
Q 022166 105 WLKRSVEARINDANRE-----------ISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGK 166 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~-----------~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~ 166 (301)
.+.+++.|+..|+... ......|++++..-++.-.|++..+.+.+. |.+.+ ....++.++|.
T Consensus 140 ~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~ 219 (358)
T 4dhd_A 140 VIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGV 219 (358)
T ss_dssp HHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3567889999998754 100025888888777777777777666543 44332 35678999999
Q ss_pred HHHHHHHHHhc-----------hhhhhcCCCcc-cccHHHHHhCCCc-------hhccCCccccccCcHHHHHH------
Q 022166 167 ASGLLLLLKSL-----------PYHASRNRHFS-YIPAEVAANHGLL-------VKEGGRSEIHLDSREGLCDA------ 221 (301)
Q Consensus 167 alql~nilRd~-----------~~d~~~~~gR~-yLP~d~l~~~gv~-------~l~~~~~~~~~~~~~~~~~~------ 221 (301)
|+|+.+=+-|+ +.|+. .|++ -+|.=..-+..-. .++..... ..+.+..+
T Consensus 220 aFQI~DD~lD~~gd~~~~GK~~g~Dl~--egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~----~~~~~~~i~~li~~ 293 (358)
T 4dhd_A 220 AFQIIDDVLDIYGDPKKFGKEIGKDIK--EHKRGNAVVAVALSHLGEGERRRLLEILAREVV----EEADVREAVALLDS 293 (358)
T ss_dssp HHHHHHHHHHHHC-------CTTHHHH--TTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSC----CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCChhhcCCCchhhHh--cCChhhHHHHHHHHhCChhhHHHHHHHHcCCCC----CHHHHHHHHHHHHH
Confidence 99999877775 56788 7889 8887553332111 11111100 11222222
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCCCCCcc
Q 022166 222 ---VFEMASVANVHLLKARELSGAVPIEA 247 (301)
Q Consensus 222 ---~~~~~~~A~~~l~~a~~~~~~lp~~~ 247 (301)
+......++.+..+|.+.+..+|+..
T Consensus 294 ~gai~~a~~~a~~~~~~A~~~L~~lp~~~ 322 (358)
T 4dhd_A 294 VGAREEALRLAARYREEAERHLAKIPNNG 322 (358)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTSSSCH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 23345678999999999999998654
No 11
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=94.73 E-value=0.4 Score=42.93 Aligned_cols=120 Identities=13% Similarity=-0.033 Sum_probs=74.7
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----C-CCCc---cHHHHHHHHHHHHHHHHHHHhch
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----G-IKSA---AADHAASHIGKASGLLLLLKSLP 178 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g-~~~~---~~~~~a~~lG~alql~nilRd~~ 178 (301)
.+|+.|+..|+..... ..|.+++..-.+.-.|++..+.+.+- | .+.+ ....++.++|.|+|+.+=+-|+-
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~ 235 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEE 235 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4578889999976531 46888988887777777777666543 3 2222 35678999999999999888874
Q ss_pred hhhhcCCCcccccHHHHHhCCCc-hhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 022166 179 YHASRNRHFSYIPAEVAANHGLL-VKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIE 246 (301)
Q Consensus 179 ~d~~~~~gR~yLP~d~l~~~gv~-~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 246 (301)
-|... .|+ ++. |+..|.. +=.+--.+..-...++++..+|.+.+..+|..
T Consensus 236 ~d~~~-~GK-----------~~g~Dl~egK~------T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 286 (324)
T 3ts7_A 236 SDTQT-LGK-----------TRGKDRDHNKP------NYPALLGLSGAKEKAEEMHEAALESLAGFGPE 286 (324)
T ss_dssp CC---------------------------CC------CHHHHHCHHHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred CCHHH-hCC-----------CccchhhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 44321 121 011 3333331 11122234555678899999999999999875
No 12
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=94.72 E-value=0.45 Score=42.47 Aligned_cols=118 Identities=13% Similarity=0.036 Sum_probs=71.9
Q ss_pred HHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHh---c-C-CCCc---cHHHHHHHHHHHHHHHHHHHhchh
Q 022166 108 RSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQA---G-G-IKSA---AADHAASHIGKASGLLLLLKSLPY 179 (301)
Q Consensus 108 ~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~---l-g-~~~~---~~~~~a~~lG~alql~nilRd~~~ 179 (301)
+|+.|+..|+..... ..|++++..-.+.-.|++..+.+.+ + | .+.+ ....++.++|.|+|+.+=+-|+--
T Consensus 152 ~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~g 229 (317)
T 4f62_A 152 GMITGQMIDLSSENK--NISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTS 229 (317)
T ss_dssp THHHHHHHHHHTSSS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred hHHHhHHHHHhccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 478899999976531 4688888877776667766666544 2 3 2221 356789999999999998888754
Q ss_pred hhhcCCCcccccHHHHHhCCCc-hhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022166 180 HASRNRHFSYIPAEVAANHGLL-VKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPI 245 (301)
Q Consensus 180 d~~~~~gR~yLP~d~l~~~gv~-~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~ 245 (301)
|-.. .|+ ++. |+..|. .+=.+--.+..-...++++..+|.+.+..+|.
T Consensus 230 d~~~-~GK-----------~~g~Dl~egK------~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 278 (317)
T 4f62_A 230 DTET-LGK-----------TQFSDAEANK------ATYPKLLGLDGAKALVVRLHEQAIAQISEFGD 278 (317)
T ss_dssp ---------------------------CC------CCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred ChHh-hCC-----------CcchHHhcCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 4331 222 111 333333 11222234556667888899999988888886
No 13
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=94.66 E-value=0.56 Score=41.58 Aligned_cols=118 Identities=12% Similarity=-0.078 Sum_probs=74.1
Q ss_pred HHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc----cHHHHHHHHHHHHHHHHHHHhchh
Q 022166 108 RSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA----AADHAASHIGKASGLLLLLKSLPY 179 (301)
Q Consensus 108 ~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~----~~~~~a~~lG~alql~nilRd~~~ 179 (301)
.|+.|+..|+..... ..|++++..-++.-.|++..+.+.+- |..++ ....++.++|.|+|+.+=+-|+--
T Consensus 153 ~~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~ 230 (304)
T 3lsn_A 153 GMVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVES 230 (304)
T ss_dssp THHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 488899999976531 46888888777777777766665442 44132 356789999999999998888755
Q ss_pred hhhcCCCcccccHHHHHhCCCc-hhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022166 180 HASRNRHFSYIPAEVAANHGLL-VKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPI 245 (301)
Q Consensus 180 d~~~~~gR~yLP~d~l~~~gv~-~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~ 245 (301)
|-.. .|+ ++. |+..|.. +=.+--.+..-...++++..+|.+.+..+|.
T Consensus 231 ~~~~-~GK-----------~~g~Dl~egK~------T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 279 (304)
T 3lsn_A 231 DTAT-LGK-----------RQGADIARDKP------TYPALLGLAAAKEYALELRDQALHALRPFDA 279 (304)
T ss_dssp HHHH-C-----------------------C------CHHHHHCHHHHHHHHHHHHHHHHHHTTTSCG
T ss_pred ChHH-hCC-----------CcccHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 5432 222 011 3332321 1122223455567889999999999999986
No 14
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=94.59 E-value=0.76 Score=41.26 Aligned_cols=136 Identities=12% Similarity=0.079 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhc
Q 022166 105 WLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSL 177 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~ 177 (301)
.+.+|+.|...|+.... ..-.|++++..-+..-.|++..+.+.+- |.+++ ....++.++|.|+|+.+=+-|+
T Consensus 151 ~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~ 229 (334)
T 3pko_A 151 AMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDY 229 (334)
T ss_dssp HHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46678889888886542 1145787776666666677766665442 43332 3567889999999999877775
Q ss_pred -----------hhhhhcCCCcccccHHHHHhCCCc---hhccCCccccccCcHHHHHH---H------HHHHHHHHHHHH
Q 022166 178 -----------PYHASRNRHFSYIPAEVAANHGLL---VKEGGRSEIHLDSREGLCDA---V------FEMASVANVHLL 234 (301)
Q Consensus 178 -----------~~d~~~~~gR~yLP~d~l~~~gv~---~l~~~~~~~~~~~~~~~~~~---~------~~~~~~A~~~l~ 234 (301)
+.|+. .|++-+|.=..-+..-. .++...... ..+.+..+ + ..-...++++..
T Consensus 230 ~~~~~~~GK~~g~Dl~--egK~Tlp~i~al~~~~~~l~~~l~~~~~~---~~~~~~~i~~li~~~ga~~~a~~~~~~~~~ 304 (334)
T 3pko_A 230 AGDPKRTQKPVLEDLR--SGVYSLPLLLSLSHAPRDFHKLLKKKQAM---TLEDIKHVQALVAQYDGVGAAKQLAQDYTD 304 (334)
T ss_dssp CSCTTSCCHHHHHHHH--TTCCCHHHHHHGGGSHHHHHHHHTTGGGC---CHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cCChhhcCCCCCCccc--cCchhHHHHHHHHhCcHHHHHHHhcCCCC---CHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 46788 78898887543322101 222111000 11222222 2 344457889999
Q ss_pred HHHhhcCCCCCc
Q 022166 235 KARELSGAVPIE 246 (301)
Q Consensus 235 ~a~~~~~~lp~~ 246 (301)
+|.+.+..+|..
T Consensus 305 ~A~~~L~~lp~~ 316 (334)
T 3pko_A 305 RALTLIQQLPVG 316 (334)
T ss_dssp HHHHHHTTSCSS
T ss_pred HHHHHHHhCCCc
Confidence 999999999874
No 15
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=94.54 E-value=2.4 Score=38.51 Aligned_cols=87 Identities=8% Similarity=-0.102 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccccCCCC----CCCCHHHHHHHHHhhhhHH-HHHHHHh---c-C-CCCc---cHHHHHHHHHHHHHHHH
Q 022166 106 LKRSVEARINDANREISD----IPEKIEDLEKYAEDTVSTL-LYTTLQA---G-G-IKSA---AADHAASHIGKASGLLL 172 (301)
Q Consensus 106 l~~li~~~~~dl~~~~~~----~~~t~~dL~~Y~~~~ag~v-g~l~~~~---l-g-~~~~---~~~~~a~~lG~alql~n 172 (301)
..+++.|+..|+...... .-.|++++..-+..-.|.+ ..+.+.+ + | .+.+ ....++.++|.|+|+.+
T Consensus 178 ~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~D 257 (367)
T 1uby_A 178 AYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQD 257 (367)
T ss_dssp HHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999654200 0247888777776666665 4444332 2 5 3332 35678999999999999
Q ss_pred HHHhch----------hhhhcCCCcccccHHH
Q 022166 173 LLKSLP----------YHASRNRHFSYIPAEV 194 (301)
Q Consensus 173 ilRd~~----------~d~~~~~gR~yLP~d~ 194 (301)
=+-|+- .|+. .|++-+|.=.
T Consensus 258 D~LD~~gd~~~~GK~g~Dl~--egK~T~p~l~ 287 (367)
T 1uby_A 258 DYLDCFGDPALTGAVGTDIQ--DNKCSWLVVQ 287 (367)
T ss_dssp HHHHHHCCTTCSSCCCCCSS--SCCCCHHHHH
T ss_pred HHHHhcCChhhcCCchhhHH--cCCchHHHHH
Confidence 888874 5677 7889888754
No 16
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=94.53 E-value=0.62 Score=41.20 Aligned_cols=127 Identities=15% Similarity=0.033 Sum_probs=78.1
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhchh
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSLPY 179 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~~~ 179 (301)
.+|+.|+..|+..... ..|++++..-.+.-.|++..+.+.+- |.+.+ ....++.++|.|+|+.+=+-|+-.
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~ 225 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYG 225 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5688899999975531 46888888888887787777666542 44332 356789999999999998888765
Q ss_pred hhhcCCCcccccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc-chhHHh
Q 022166 180 HASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIE-ARPVLL 252 (301)
Q Consensus 180 d~~~~~gR~yLP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~-~r~~~~ 252 (301)
|-.. .|+-. | +|+..|. .+=.+.-.+..-...++++..+|.+.+..+|+. .+..+.
T Consensus 226 d~~~-~GK~~---------g-~Dl~~gK------~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~ 282 (301)
T 1rtr_A 226 DEAK-LGKKV---------G-SDLENNK------STYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLL 282 (301)
T ss_dssp HHCC------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSCCHHHH
T ss_pred CHHH-hCCCc---------c-hHHHcCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 5432 22200 0 1333332 112222334555678888999999888888843 344443
No 17
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=94.46 E-value=1.3 Score=40.02 Aligned_cols=143 Identities=15% Similarity=0.037 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhc
Q 022166 105 WLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSL 177 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~ 177 (301)
.+.+|+.|...|+.... ..-.|++++..-.+.-.|++..+.+++- |.+++ ....++.++|.|+|+.+=+-|+
T Consensus 159 ~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~ 237 (345)
T 3oyr_A 159 ASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDY 237 (345)
T ss_dssp HHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678899999997652 1136888888877777787777766543 43332 3567899999999999988776
Q ss_pred -----------hhhhhcCCCcccccHHHHHhCCCc---h----hccCC-ccccccCcHHHHHH------HHHHHHHHHHH
Q 022166 178 -----------PYHASRNRHFSYIPAEVAANHGLL---V----KEGGR-SEIHLDSREGLCDA------VFEMASVANVH 232 (301)
Q Consensus 178 -----------~~d~~~~~gR~yLP~d~l~~~gv~---~----l~~~~-~~~~~~~~~~~~~~------~~~~~~~A~~~ 232 (301)
+.|+. .|++-+|.=..-+..-. . ++... .+.. .-+.+.++ +..-...++.+
T Consensus 238 ~~d~~~~GK~~g~Dl~--egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~--~~~~v~~~i~~~gale~a~~~a~~~ 313 (345)
T 3oyr_A 238 GGATETLGKNAGDDFR--EGKATLPLLLAIARSGPREAEFWERAIGRREQTEA--DFRRARELIIGSGALDATLDLAADY 313 (345)
T ss_dssp ---------------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCS--SHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cCChhhcCCCccchhh--cCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 45777 78888987654332211 1 11111 0000 11233333 34556678999
Q ss_pred HHHHHhhcCCCCCcc-hhHHh
Q 022166 233 LLKARELSGAVPIEA-RPVLL 252 (301)
Q Consensus 233 l~~a~~~~~~lp~~~-r~~~~ 252 (301)
..+|.+.+..+|+.. +..+.
T Consensus 314 ~~~A~~~L~~lp~~~~~~~L~ 334 (345)
T 3oyr_A 314 ADKAKAALAMFPANDWREALE 334 (345)
T ss_dssp HHHHHHTTTTSCSSHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHH
Confidence 999999999999753 44443
No 18
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=94.45 E-value=1.7 Score=39.75 Aligned_cols=138 Identities=16% Similarity=0.048 Sum_probs=84.2
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHH-HHHHHHh---c-CCCCc---cHHHHHHHHHHHHHHHHHHHhc-
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTL-LYTTLQA---G-GIKSA---AADHAASHIGKASGLLLLLKSL- 177 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~v-g~l~~~~---l-g~~~~---~~~~~a~~lG~alql~nilRd~- 177 (301)
.+++.|+..|+.... ..-.|++++..-+..-.|++ ....+.+ + |.+++ ....+..++|.|+|+.+=+-|+
T Consensus 185 ~~~~~GQ~lDl~~~~-~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~ 263 (380)
T 3lk5_A 185 TEVIGGQLLDIYLES-HANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVF 263 (380)
T ss_dssp HHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467788888886542 11357888877666666665 3433332 2 44432 3567899999999999877776
Q ss_pred ----------hhhhhcCCCcccccHHHHHhCC----------CchhccCCccccccCcHH---HHHH------HHHHHHH
Q 022166 178 ----------PYHASRNRHFSYIPAEVAANHG----------LLVKEGGRSEIHLDSREG---LCDA------VFEMASV 228 (301)
Q Consensus 178 ----------~~d~~~~~gR~yLP~d~l~~~g----------v~~l~~~~~~~~~~~~~~---~~~~------~~~~~~~ 228 (301)
+.|+. .|++-+|.=..-+.. +..++.... ..+. +.++ +......
T Consensus 264 gd~~~~GK~~g~Dl~--egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~-----~~~~~~~v~~li~~~Ga~~~~~~~ 336 (380)
T 3lk5_A 264 GDPAITGKPAGDDIR--EGKRTVLLALALQRADKQSPEAATAIRAGVGKVT-----SPEDIAVITEHIRATGAEEEVEQR 336 (380)
T ss_dssp SCHHHHSSCTTHHHH--TTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCC-----SHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CChhhhCCCchhhHh--cCCchHHHHHHHHhCccCChHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHcChHHHHHHH
Confidence 56788 789988875432211 001221110 1122 2222 2345567
Q ss_pred HHHHHHHHHhhcCCCCCc--chhHHh
Q 022166 229 ANVHLLKARELSGAVPIE--ARPVLL 252 (301)
Q Consensus 229 A~~~l~~a~~~~~~lp~~--~r~~~~ 252 (301)
++.+..+|...+..+|.. .|..+.
T Consensus 337 ~~~~~~~A~~~L~~lp~~~~~r~~L~ 362 (380)
T 3lk5_A 337 ISQLTESGLAHLDDVDIPDEVRAQLR 362 (380)
T ss_dssp HHHHHHHHHHHGGGSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 899999999999999853 454444
No 19
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=94.42 E-value=0.49 Score=41.83 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCccHHHHHHHHHHHHHHHHHHHhch--
Q 022166 105 WLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSAAADHAASHIGKASGLLLLLKSLP-- 178 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~~~~~~a~~lG~alql~nilRd~~-- 178 (301)
.+.+++.|+..|+..... ..|++++..-++.-.|++..+.+.+- |.+++...+++.++|.|+|+.+=+-|+-
T Consensus 135 ~~~~~~~GQ~~dl~~~~~--~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 135 VIGKMSEAELIEQLSRYK--PITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhHHHHHHccCC--CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 467889999999976531 37888888777777777766665542 4443556789999999999998888864
Q ss_pred --------hhhhcCCCcccccHHH
Q 022166 179 --------YHASRNRHFSYIPAEV 194 (301)
Q Consensus 179 --------~d~~~~~gR~yLP~d~ 194 (301)
.|+. .|++-+|.=.
T Consensus 213 ~~~GK~~g~Dl~--egK~T~p~l~ 234 (299)
T 1v4e_A 213 EKIGKDGFLDLK--NGVASFPLVT 234 (299)
T ss_dssp CSCCTTSSCCCT--TTTCCHHHHH
T ss_pred cccCCCcchHhh--CCCchHHHHH
Confidence 4455 5777777643
No 20
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=94.34 E-value=2.9 Score=37.81 Aligned_cols=138 Identities=7% Similarity=-0.094 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhccccC-----------C-CCC---CCCHHHHHHHHHhhhhHH-HHHHHHh---c-C-CCCc---cHHHH
Q 022166 105 WLKRSVEARINDANRE-----------I-SDI---PEKIEDLEKYAEDTVSTL-LYTTLQA---G-G-IKSA---AADHA 160 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~-----------~-~~~---~~t~~dL~~Y~~~~ag~v-g~l~~~~---l-g-~~~~---~~~~~ 160 (301)
...+++.|+..|+... . +.. -.|++++..-++.-.|++ ..+.+.+ + | .+.+ ....+
T Consensus 159 ~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~ 238 (362)
T 1yhl_A 159 VDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERV 238 (362)
T ss_dssp HHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3478899999999755 1 000 257888877777767776 5554433 3 4 2222 35688
Q ss_pred HHHHHHHHHHHHHHHhch----------hhhhcCCCcccccHHHHHhCCCc---hhcc---CCccccccCcHHHHHHHH-
Q 022166 161 ASHIGKASGLLLLLKSLP----------YHASRNRHFSYIPAEVAANHGLL---VKEG---GRSEIHLDSREGLCDAVF- 223 (301)
Q Consensus 161 a~~lG~alql~nilRd~~----------~d~~~~~gR~yLP~d~l~~~gv~---~l~~---~~~~~~~~~~~~~~~~~~- 223 (301)
+.++|.|+|+.+=+-|+- .|+. .|++-+|.=..-+..-. ..+. +..++. .-+.+.+++.
T Consensus 239 g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~--egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~i~~ 314 (362)
T 1yhl_A 239 AHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIE--DAKCSWLAVTFLGKANAAQVAEFKANYGDKDPA--KVAVVKRLYSE 314 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT--TTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHhCCChhhHh--cCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHH--HHHHHHHHHHH
Confidence 999999999998887763 5777 78899987543332211 1110 010000 0112223222
Q ss_pred -----HHHHHHHHHHHHHHhhcCCCCCc
Q 022166 224 -----EMASVANVHLLKARELSGAVPIE 246 (301)
Q Consensus 224 -----~~~~~A~~~l~~a~~~~~~lp~~ 246 (301)
.....++.++.+|.+.+..+|..
T Consensus 315 ~g~~~~~~~~~~~~~~~A~~~L~~lp~~ 342 (362)
T 1yhl_A 315 ANLQADFAAYEAEVVREVESLIEQLKVK 342 (362)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 23356778888888887777765
No 21
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=94.29 E-value=0.58 Score=41.45 Aligned_cols=120 Identities=15% Similarity=0.024 Sum_probs=74.6
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc---CC--CC---ccHHHHHHHHHHHHHHHHHHHhch
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG---GI--KS---AAADHAASHIGKASGLLLLLKSLP 178 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l---g~--~~---~~~~~~a~~lG~alql~nilRd~~ 178 (301)
..|+.|+..|+..... ..|++++..-.+.-.|++..+.+.+- +. +. .....++.++|.|+|+.+=+-|+-
T Consensus 158 ~~~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~ 235 (302)
T 3p8r_A 158 QGMCLGQALDLAAENR--LISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDII 235 (302)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3678899999976521 46888888777777777766665442 22 22 235678999999999999887774
Q ss_pred hhhhcCCCcccccHHHHHhCCCc-hhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 022166 179 YHASRNRHFSYIPAEVAANHGLL-VKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIE 246 (301)
Q Consensus 179 ~d~~~~~gR~yLP~d~l~~~gv~-~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 246 (301)
.|-.. .|+ ++. |+..|. .+=.+--.+..-...++++..+|.+.+..+|..
T Consensus 236 ~~~~~-~GK-----------~~g~Dl~egK------~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 286 (302)
T 3p8r_A 236 SDTET-LGK-----------PQGSDQELNK------STYPALLGLEGAQQKAHTLLQEALLALEAIPYN 286 (302)
T ss_dssp TC---------------------------C------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CCHHH-hCC-----------CcchHHhcCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 44321 122 111 443333 222233345666778899999999999999875
No 22
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=93.99 E-value=0.46 Score=42.04 Aligned_cols=135 Identities=9% Similarity=-0.173 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc---CCCCccHHHHHHHHHHHHHHHHHHHhc----
Q 022166 105 WLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG---GIKSAAADHAASHIGKASGLLLLLKSL---- 177 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l---g~~~~~~~~~a~~lG~alql~nilRd~---- 177 (301)
.+.+|+.|+..|+.........|++++..-++.-.|++..+.+.+. +..++....++.++|.|+|+.+=+-|+
T Consensus 119 ~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~ 198 (301)
T 2q80_A 119 QLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKE 198 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHhhhcCCh
Confidence 4577899999999642100136888888877777777766665543 333345778999999999999877775
Q ss_pred -------hhhhhcCCCcccccHHHHHhCCCc-----hhccCCccccccCcHHHHH----H------HHHHHHHHHHHHHH
Q 022166 178 -------PYHASRNRHFSYIPAEVAANHGLL-----VKEGGRSEIHLDSREGLCD----A------VFEMASVANVHLLK 235 (301)
Q Consensus 178 -------~~d~~~~~gR~yLP~d~l~~~gv~-----~l~~~~~~~~~~~~~~~~~----~------~~~~~~~A~~~l~~ 235 (301)
+.|+. .|++-+|.=..-+.+-. ..+.... ..+.+.. + +......++.+..+
T Consensus 199 ~~~GK~~g~Dl~--egK~T~p~i~al~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~ 271 (301)
T 2q80_A 199 YSENKSFCEDLT--EGKFSFPTIHAIWSRPESTQVQNILRQRT-----ENIDIKKYCVHYLEDVGSFEYTRNTLKELEAK 271 (301)
T ss_dssp -----CTTHHHH--HTCCCHHHHHHHHHSTTCCHHHHHHHHTC-----CCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred hhhCCCccchhh--cCCcHHHHHHHHHcCccchHHHHHHhcCC-----CCHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 46777 68888887553332211 1111110 1122222 2 22444567888888
Q ss_pred HHhhcCCCCCc
Q 022166 236 ARELSGAVPIE 246 (301)
Q Consensus 236 a~~~~~~lp~~ 246 (301)
|.+.+..+|..
T Consensus 272 A~~~L~~l~~~ 282 (301)
T 2q80_A 272 AYKQIDARGGN 282 (301)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHcCCCC
Confidence 88888778754
No 23
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=93.95 E-value=1.3 Score=39.72 Aligned_cols=140 Identities=14% Similarity=0.002 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHh---c-CCCCc---cHHHHHHHHHHHHHHHHHHHhc
Q 022166 105 WLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQA---G-GIKSA---AADHAASHIGKASGLLLLLKSL 177 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~---l-g~~~~---~~~~~a~~lG~alql~nilRd~ 177 (301)
.+.+++.|+..|+.... ..-.|++++..-++.-.|++..+++.+ + |.+++ ....++.++|.|+|+.+=+-|+
T Consensus 141 ~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~ 219 (334)
T 3rmg_A 141 LGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDY 219 (334)
T ss_dssp HHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 46788999999997653 113688888877777777777666654 2 43332 3567899999999999988886
Q ss_pred ----------hhhhhcCCCcccccHHHHHhCCCc-------hhc-cCCccccccCcHHHH---HH------HHHHHHHHH
Q 022166 178 ----------PYHASRNRHFSYIPAEVAANHGLL-------VKE-GGRSEIHLDSREGLC---DA------VFEMASVAN 230 (301)
Q Consensus 178 ----------~~d~~~~~gR~yLP~d~l~~~gv~-------~l~-~~~~~~~~~~~~~~~---~~------~~~~~~~A~ 230 (301)
+.|+. .|++-+|.=..-+..-. +++ .+.. ..+.+. ++ +......++
T Consensus 220 ~~~~~~GK~~g~Dl~--egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~-----~~~~~~~v~~~i~~~g~~~~a~~~~~ 292 (334)
T 3rmg_A 220 FDSKKIGKPTGNDML--EGKLTLPALYALNTTKDAWAEQIAFKVKEGTA-----TPDEIVRLIEFTKDNGGIEYACRTIE 292 (334)
T ss_dssp SCC------CCHHHH--TTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CChhhcCCCchhhhh--cCchHHHHHHHHHhCChhhHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 37777 78899987553222111 111 1110 112222 22 344456788
Q ss_pred HHHHHHHhhcCCCCCcc-hhHHh
Q 022166 231 VHLLKARELSGAVPIEA-RPVLL 252 (301)
Q Consensus 231 ~~l~~a~~~~~~lp~~~-r~~~~ 252 (301)
.+..+|.+.+..+|+.. +..+.
T Consensus 293 ~~~~~A~~~L~~lp~~~~~~~L~ 315 (334)
T 3rmg_A 293 QYKKKAFDLLAALPDSNICLALR 315 (334)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999998653 43443
No 24
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=93.86 E-value=0.53 Score=41.68 Aligned_cols=72 Identities=21% Similarity=0.172 Sum_probs=50.6
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhchh
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSLPY 179 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~~~ 179 (301)
.+|+.|+..|+..... ..|++++..-.+.-.|++..+.+.+- |.+++ ....++.++|.|+|+.+=+-|+--
T Consensus 156 ~~~~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~ 233 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEKV--SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATS 233 (302)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3578889999876531 46888888777666677766665542 33332 356789999999999998888744
Q ss_pred h
Q 022166 180 H 180 (301)
Q Consensus 180 d 180 (301)
|
T Consensus 234 d 234 (302)
T 3p8l_A 234 T 234 (302)
T ss_dssp -
T ss_pred C
Confidence 3
No 25
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=93.76 E-value=0.65 Score=40.99 Aligned_cols=120 Identities=13% Similarity=0.059 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhc
Q 022166 105 WLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSL 177 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~ 177 (301)
...+|+.|+..|+..... ..|.+++..-.+.-.|++..+.+.+- |.+.+ ....++.++|.|+|+.+=+-|+
T Consensus 135 ~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~ 212 (295)
T 3ipi_A 135 AGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEF 212 (295)
T ss_dssp HHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788899999976531 35667776667677777766665542 33332 3567899999999999888887
Q ss_pred hhh-----hhcCCCcccccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 022166 178 PYH-----ASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIE 246 (301)
Q Consensus 178 ~~d-----~~~~~gR~yLP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 246 (301)
--+ .. .|.+.+|.=... . ..+ ...+..-.+.++++..+|.+.+..+|+.
T Consensus 213 ~~~~~gkd~~--~gk~Tlp~l~al----------~------~~~--~~~le~a~~~a~~~~~~A~~~L~~lp~~ 266 (295)
T 3ipi_A 213 LEVVEGKESK--FTSETLPHIYMK----------S------TSK--EEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp HHHHHC---------CCHHHHHTT----------T------SCH--HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred cCCccCCCcc--cCcccHHHHHHH----------h------cCc--hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 543 33 445555532210 1 001 1346666778899999999999999865
No 26
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=93.63 E-value=1.5 Score=39.71 Aligned_cols=145 Identities=16% Similarity=0.074 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHh
Q 022166 104 GWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKS 176 (301)
Q Consensus 104 ~~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd 176 (301)
+.+.+++.|+..|+.... ..-.|++++..-++.-.|++..+.+.+- |.+.+ ....++.++|.|+|+.+=+-|
T Consensus 150 ~~~~~l~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld 228 (352)
T 3nf2_A 150 KASRSLIDGQAQDISYEH-RDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLG 228 (352)
T ss_dssp HHHHHHHHHHHHHHHHTT-CSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999997552 1136888888777777777777666542 44332 356789999999999987777
Q ss_pred c-----------hhhhhcCCCcccccHHHHHhCCCc------hhccCCccc----cccCcHHHH---HH------HHHHH
Q 022166 177 L-----------PYHASRNRHFSYIPAEVAANHGLL------VKEGGRSEI----HLDSREGLC---DA------VFEMA 226 (301)
Q Consensus 177 ~-----------~~d~~~~~gR~yLP~d~l~~~gv~------~l~~~~~~~----~~~~~~~~~---~~------~~~~~ 226 (301)
+ +.|+. .|++-+|.=..-+.+-. .++.....+ .. ..+.+. ++ +..-.
T Consensus 229 ~~gd~~~~GK~~g~Dl~--egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~-~~~~~~~~~~li~~~g~~~~a~ 305 (352)
T 3nf2_A 229 IWGDPDATGKQTWSDLR--QRKKSLPVVAALAAGGAASERLGEILTADAKASDFANF-SEEEFAARAALIEEAGGREWTA 305 (352)
T ss_dssp HHCCHHHHSSCTTHHHH--TTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGC-CHHHHHHHHHHHHHTTHHHHHH
T ss_pred ccCChhhhCCCcCcccc--cCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCC-CHHHHHHHHHHHHHCCcHHHHH
Confidence 5 57778 78999987554332211 112110000 00 112222 22 34455
Q ss_pred HHHHHHHHHHHhhcCCCCCc--chhHHh
Q 022166 227 SVANVHLLKARELSGAVPIE--ARPVLL 252 (301)
Q Consensus 227 ~~A~~~l~~a~~~~~~lp~~--~r~~~~ 252 (301)
..++.+..+|.+.+..+|+. .+..+.
T Consensus 306 ~~a~~~~~~A~~~L~~lp~~~~~r~~L~ 333 (352)
T 3nf2_A 306 DEARRQHTIAIEALDAVDMPDRVRDRFT 333 (352)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 57899999999999999873 344444
No 27
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=93.50 E-value=0.47 Score=42.48 Aligned_cols=121 Identities=10% Similarity=-0.000 Sum_probs=71.0
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhchh
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSLPY 179 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~~~ 179 (301)
.+|+.|+..|+.... ..-.|++++..-.+.-.|++..+.+.+- |.+++ ....++.++|.|+|+.+=+-|+--
T Consensus 180 ~~m~~GQ~lDl~~~~-~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~g 258 (324)
T 3uca_A 180 DGMIGGQIVDIINED-KEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVG 258 (324)
T ss_dssp TTHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHhHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 458889999997653 1135888887776666677766665442 43332 356789999999999998887743
Q ss_pred hhhcCCCcccccHHHHHhCCCc-hhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 022166 180 HASRNRHFSYIPAEVAANHGLL-VKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIE 246 (301)
Q Consensus 180 d~~~~~gR~yLP~d~l~~~gv~-~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 246 (301)
|-.. .|+ ++. |+..|. .+=.+.-.+..-...++++..+|.+.+..+|..
T Consensus 259 d~~~-~GK-----------~~g~Dl~egK------~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 308 (324)
T 3uca_A 259 NAKD-LGK-----------NVHKDQESNK------NNYITIFGLEECKKKCVNITEECIEILSSIKGN 308 (324)
T ss_dssp C-----------------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred CHHH-hCC-----------CcchHhhcCC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3221 111 011 232222 111122234455567888888888888888864
No 28
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=93.46 E-value=0.18 Score=44.70 Aligned_cols=113 Identities=16% Similarity=0.104 Sum_probs=69.3
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCccHHHHHHHHHHHHHHHHHHHhchh---
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSAAADHAASHIGKASGLLLLLKSLPY--- 179 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~~~~~~a~~lG~alql~nilRd~~~--- 179 (301)
.+|+.|+..|+.........|++++..-.+.-.|++..+.+.+- |.+.+....++.++|.|+|+.+=+-|+--
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~ 226 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEE 226 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 46888999998755100146888888877777777766665443 44444577899999999999876666533
Q ss_pred --------hhhcCCCcccccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 022166 180 --------HASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIEA 247 (301)
Q Consensus 180 --------d~~~~~gR~yLP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~ 247 (301)
|+. .|++-+|.= -.+..-...++++..+|.+.+..+|...
T Consensus 227 ~~GK~~g~Dl~--~gK~T~p~l--------------------------~~l~~a~~~~~~~~~~A~~~L~~~~~~~ 274 (297)
T 3m0g_A 227 AAGKRLGKDAE--AHKATFVSL--------------------------LGLAGAKSRAADLVAEAEAALAPYGEAA 274 (297)
T ss_dssp ----------------CCHHHH--------------------------HCSSHHHHHHHHHHHHHHHHTGGGGGGG
T ss_pred HhCCCccchhh--cCCccHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 333 333333322 1223334567888888888888887653
No 29
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=93.44 E-value=0.87 Score=39.92 Aligned_cols=121 Identities=10% Similarity=-0.057 Sum_probs=75.0
Q ss_pred HHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCccHHHHHHHHHHHHHHHHHHHhchhhh
Q 022166 106 LKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSAAADHAASHIGKASGLLLLLKSLPYHA 181 (301)
Q Consensus 106 l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~~~~~~a~~lG~alql~nilRd~~~d~ 181 (301)
..+++.|+..|+.........|++++..-.+.-.|++..+.+.+- |.+.+....++.++|.|+|+.+=+-|+-.|.
T Consensus 143 ~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~ 222 (284)
T 2ftz_A 143 AYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYDDLXDILGSF 222 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 478889999998654210036888888888887787777666543 4444456789999999999999888886665
Q ss_pred hcCCCcccccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022166 182 SRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPI 245 (301)
Q Consensus 182 ~~~~gR~yLP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~ 245 (301)
.. .|+- .-. |+. . .+-.+.-.+..-...++++..+|.+.+..+|.
T Consensus 223 ~~-~GK~-~g~---------Dl~--K------~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 267 (284)
T 2ftz_A 223 EK-VGKD-LGK---------DTE--X------VTLVXXVGIQXAREMADXYYEEVLXGIESEGL 267 (284)
T ss_dssp CC-C-----------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred Hh-hCCC-cch---------hcc--c------cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 42 3331 001 111 0 11111122344556777788888877777775
No 30
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=93.26 E-value=3.2 Score=37.02 Aligned_cols=88 Identities=13% Similarity=0.028 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcccc-CCCCCCCCHHHHHHHHHhhhhHH-HHHHHHhc----CCCCc-cHHHHHHHHHHHHHHHHHHHhc
Q 022166 105 WLKRSVEARINDANR-EISDIPEKIEDLEKYAEDTVSTL-LYTTLQAG----GIKSA-AADHAASHIGKASGLLLLLKSL 177 (301)
Q Consensus 105 ~l~~li~~~~~dl~~-~~~~~~~t~~dL~~Y~~~~ag~v-g~l~~~~l----g~~~~-~~~~~a~~lG~alql~nilRd~ 177 (301)
...+++.|+..|+.. .....-.|++++..-++.-.|++ ..+.+.+. |.+.+ ....++.++|.|+|+.+=+-|+
T Consensus 138 ~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~l~~~g~~lG~aFQi~DD~ld~ 217 (330)
T 1wmw_A 138 VVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQIVDDVLNL 217 (330)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 358899999999976 31101468888887777777777 66665542 43332 2668999999999999888875
Q ss_pred ----------hhhhhcCCCcccccHHH
Q 022166 178 ----------PYHASRNRHFSYIPAEV 194 (301)
Q Consensus 178 ----------~~d~~~~~gR~yLP~d~ 194 (301)
+.|+. .|++-+|.=.
T Consensus 218 ~~d~~~GK~~g~Dl~--egK~T~p~i~ 242 (330)
T 1wmw_A 218 EGGEAYGKERAGDLY--EGKRTLILLR 242 (330)
T ss_dssp SCSCCCSSSTTHHHH--HTCCCHHHHH
T ss_pred cCCcccCCCcCchhh--CCCCCHHHHH
Confidence 57787 7889888754
No 31
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=93.20 E-value=4.4 Score=37.04 Aligned_cols=88 Identities=6% Similarity=-0.106 Sum_probs=58.9
Q ss_pred HHHHHHHHHhccccC-----------CC----CCCCCHHHHHHHHHhhhhHH-HHHHHH---hc-CCCCc----cHHHHH
Q 022166 106 LKRSVEARINDANRE-----------IS----DIPEKIEDLEKYAEDTVSTL-LYTTLQ---AG-GIKSA----AADHAA 161 (301)
Q Consensus 106 l~~li~~~~~dl~~~-----------~~----~~~~t~~dL~~Y~~~~ag~v-g~l~~~---~l-g~~~~----~~~~~a 161 (301)
..+++.|+..|+... +. ..-.|++++..-++.-.|.+ ..+.+. ++ |.+++ ....++
T Consensus 188 ~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g 267 (390)
T 3dyh_A 188 DYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELA 267 (390)
T ss_dssp HHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 467889999998651 00 00257888877666666665 443332 23 44332 356799
Q ss_pred HHHHHHHHHHHHHHhc----------hhhhhcCCCcccccHHHH
Q 022166 162 SHIGKASGLLLLLKSL----------PYHASRNRHFSYIPAEVA 195 (301)
Q Consensus 162 ~~lG~alql~nilRd~----------~~d~~~~~gR~yLP~d~l 195 (301)
.++|.|+|+.+=+-|+ +.|+. .|++-+|.=..
T Consensus 268 ~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~--egK~T~pvi~a 309 (390)
T 3dyh_A 268 MLMGEYFQVQDDVMDCFTPPERLGKVGTDIQ--DAKCSWLAVTF 309 (390)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT--TTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCChHHhCCCcchhh--cCCccHHHHHH
Confidence 9999999999888887 35788 88998886543
No 32
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=93.11 E-value=0.94 Score=40.20 Aligned_cols=119 Identities=13% Similarity=0.032 Sum_probs=69.3
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhchh
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSLPY 179 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~~~ 179 (301)
.+|+.|+..|+..... ..|++++..-.+.-.|++..+.+.+- |.+++ ....++.++|.|+|+.+=+-|+--
T Consensus 155 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~g 232 (309)
T 3pde_A 155 SGMVAGQAKDIQSEHV--NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVS 232 (309)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3577888899876531 35888888777777777766665442 44332 356799999999999998888743
Q ss_pred hhhcCCCcccccHHHHHhCCCc-hhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022166 180 HASRNRHFSYIPAEVAANHGLL-VKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPI 245 (301)
Q Consensus 180 d~~~~~gR~yLP~d~l~~~gv~-~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~ 245 (301)
|-.. .|+ ++. |+..|. .+=.+--.+..--..+++++.+|.+.+..+|.
T Consensus 233 d~~~-~GK-----------~~g~Dl~egK------~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~~ 281 (309)
T 3pde_A 233 SPAE-MGK-----------ATQKDADEAK------NTYPGKLGLIGANQALIDTIHSGQAALQGLPT 281 (309)
T ss_dssp C-----------------------CTTTS------SSHHHHHCHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CHHH-hCC-----------CccchhhcCC------ccHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 3221 111 011 332222 11112222344445677777777777766544
No 33
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=93.07 E-value=0.54 Score=42.28 Aligned_cols=119 Identities=15% Similarity=0.002 Sum_probs=71.0
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhchh
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSLPY 179 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~~~ 179 (301)
.+|+.|+..|+..... ..|++++..-.+.-.|++..+.+.+- |.+++ ...+++.++|.|+|+.+=+-|+--
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~g 269 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTA 269 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4578888888865421 36888888888877777766665442 44332 356789999999999988888754
Q ss_pred hhhcCCCcccccHHHHHhCCCc-hhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022166 180 HASRNRHFSYIPAEVAANHGLL-VKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPI 245 (301)
Q Consensus 180 d~~~~~gR~yLP~d~l~~~gv~-~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~ 245 (301)
|-.. .|+ ++. |+..|. .+-.+.-.+..-...++++..+|.+.+..+|.
T Consensus 270 d~~~-~GK-----------~~g~Dl~egK------~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~ 318 (335)
T 2h8o_A 270 DAAT-MGK-----------ATGKDAARGK------GTLVALRGEAWAREKLQEQVAEASELLAPYGE 318 (335)
T ss_dssp ----------------------------C------CCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred CHHH-hCC-----------CcchHHhcCC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 4331 121 011 333222 11112223455567788888889888888875
No 34
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=93.06 E-value=0.76 Score=40.90 Aligned_cols=121 Identities=12% Similarity=-0.022 Sum_probs=71.4
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHh--c-C--CCCc---cHHHHHHHHHHHHHHHHHHHhch
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQA--G-G--IKSA---AADHAASHIGKASGLLLLLKSLP 178 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~--l-g--~~~~---~~~~~a~~lG~alql~nilRd~~ 178 (301)
..|+.|+..|+.... ....|++++..-.+.-.|++..+.+.+ + | .+++ ....++.++|.|+|+.+=+-|+-
T Consensus 158 ~~m~~GQ~lDl~~~~-~~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~ 236 (313)
T 3lom_A 158 SGMVSGQSLDLSELA-KSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLY 236 (313)
T ss_dssp TTHHHHHHHHHHTTT-SSCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC-CCCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367889999997652 114688888877766666665555543 3 4 2222 35678999999999999888874
Q ss_pred hhhhcCCCcccccHHHHHhCCCc-hhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 022166 179 YHASRNRHFSYIPAEVAANHGLL-VKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIE 246 (301)
Q Consensus 179 ~d~~~~~gR~yLP~d~l~~~gv~-~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 246 (301)
-|-.. .|+ ++. |+..|.. +=.+--.+..-...++++..+|.+.+..+|..
T Consensus 237 gd~~~-~GK-----------~~g~Dl~~gK~------T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 287 (313)
T 3lom_A 237 APTQI-LGK-----------GRSSDQANQKT------TFATLFNKQQLEEEIAVHYQIAMDSLRLFGSK 287 (313)
T ss_dssp CC---------------------------CC------CHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGG
T ss_pred CCHHh-hCC-----------CCcchhhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 43321 121 011 2322221 11111124455567888999999999889874
No 35
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=92.92 E-value=2.5 Score=37.95 Aligned_cols=139 Identities=14% Similarity=0.025 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhc
Q 022166 105 WLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSL 177 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~ 177 (301)
...+++.|+..|+.... ..-.|++++..-++.-.|++..+.+.+- |.+.+ ....++.++|.|+|+.+=+-|+
T Consensus 145 ~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~ 223 (342)
T 1wy0_A 145 ASNELCEGQARDLEFEK-KSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDL 223 (342)
T ss_dssp HHHHHHHHHHHHHHHTT-CSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999997552 1134888888877777777777766543 44332 3567899999999999877775
Q ss_pred -----------hhhhhcCCCcccccHHHHHhCCCc-------hhccCCcc--cccc-----CcHHHH---HHH------H
Q 022166 178 -----------PYHASRNRHFSYIPAEVAANHGLL-------VKEGGRSE--IHLD-----SREGLC---DAV------F 223 (301)
Q Consensus 178 -----------~~d~~~~~gR~yLP~d~l~~~gv~-------~l~~~~~~--~~~~-----~~~~~~---~~~------~ 223 (301)
+.|+. .|++-+|.=..-+..-. ..+..... ...| ..+.+. +++ .
T Consensus 224 ~~d~~~~GK~~g~Dl~--egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~ 301 (342)
T 1wy0_A 224 IADEKKLGKPVGSDIR--KGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSID 301 (342)
T ss_dssp HSCHHHHTSCSCHHHH--HTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHH
T ss_pred cCChhhhCCCchhHHh--CCCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHH
Confidence 46777 68888887543322211 11111000 0000 011222 222 2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCc
Q 022166 224 EMASVANVHLLKARELSGAVPIE 246 (301)
Q Consensus 224 ~~~~~A~~~l~~a~~~~~~lp~~ 246 (301)
.....++.+..+|.+.+..+|..
T Consensus 302 ~~~~~~~~~~~~A~~~L~~l~~~ 324 (342)
T 1wy0_A 302 YAAEIAKDMIKKANEALRILPKS 324 (342)
T ss_dssp HHHHHHHHHHHHHHTTGGGSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 44557888999999999888864
No 36
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=92.53 E-value=2.5 Score=38.44 Aligned_cols=143 Identities=12% Similarity=-0.010 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhccccCCCCCCCCH-HHHHHHHHhhhhHH-HHHHHHh----cCCCCc-----cHHHHHHHHHHHHHHHHH
Q 022166 105 WLKRSVEARINDANREISDIPEKI-EDLEKYAEDTVSTL-LYTTLQA----GGIKSA-----AADHAASHIGKASGLLLL 173 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~-~dL~~Y~~~~ag~v-g~l~~~~----lg~~~~-----~~~~~a~~lG~alql~ni 173 (301)
...+++.|+..|+.......-.+. +++..-++.-.|.+ ..+.+.+ .|.+++ ....++.++|.|+|+.+=
T Consensus 176 ~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD 255 (368)
T 2her_A 176 SIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHND 255 (368)
T ss_dssp HHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999976520001244 44444344444444 3333322 244333 367899999999999998
Q ss_pred HHhc------hhhhhcCCCcccccHHHHHhCCCc---hhccCCccccccCcHHHHHHH------HHHHHHHHHHHHHHHh
Q 022166 174 LKSL------PYHASRNRHFSYIPAEVAANHGLL---VKEGGRSEIHLDSREGLCDAV------FEMASVANVHLLKARE 238 (301)
Q Consensus 174 lRd~------~~d~~~~~gR~yLP~d~l~~~gv~---~l~~~~~~~~~~~~~~~~~~~------~~~~~~A~~~l~~a~~ 238 (301)
+-|+ +.|+. .|++-+|.=..-+..-. ..+..... . ..+.+++++ ......+++++.+|..
T Consensus 256 ~LD~~~~GK~g~Dl~--egK~T~pvi~al~~a~~~~r~~L~~~~~-~--~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~ 330 (368)
T 2her_A 256 VSDYLFNDSNADDIC--RFKLTWPLQKSFEIADEEMKLKISENYG-K--NSSLVKDCYNLLKINEHYLEYQRNALDYLIK 330 (368)
T ss_dssp HHHHHSCCSSSCTTT--TTCCCHHHHSSTTTCCHHHHHHHHHHTT-T--CHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCChHh--CCcccHHHHHHHHhCCHHHHHHHHHHhC-C--cHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 8776 57888 88988886432211101 11110000 0 013444443 3445578899999999
Q ss_pred hcCCCCCcc-hhHHh
Q 022166 239 LSGAVPIEA-RPVLL 252 (301)
Q Consensus 239 ~~~~lp~~~-r~~~~ 252 (301)
.+..+|... +.++.
T Consensus 331 ~L~~lp~~~~k~~L~ 345 (368)
T 2her_A 331 LVKDITDDSLQKVFI 345 (368)
T ss_dssp HHTTCSCHHHHHHHH
T ss_pred HHHhCCCcHHHHHHH
Confidence 999999853 44444
No 37
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=92.34 E-value=6.3 Score=35.75 Aligned_cols=165 Identities=14% Similarity=0.070 Sum_probs=96.6
Q ss_pred HHhhcCChhhhh---HHHHHHHHHHHHHHhcccC--C-ChHHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHhHh
Q 022166 28 LCLLELPPELRK---TAFALRAFNVETSKAMDIA--S-DPRIGLMRLVWWKEAIDKIYVRK----QIEHPVAQALASVLS 97 (301)
Q Consensus 28 ~a~~~lp~~~R~---~~~alyaf~r~~d~i~D~~--~-~~~~~~~rL~~w~~~l~~~~~g~----~~~~Pv~~aL~~~~~ 97 (301)
+++.+.|..-.. -+.-+..|.-.+||+.|.. + ++.. +....+.+..+..|. ....|+..+|.++.+
T Consensus 93 laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~----~~~~~~~l~~~l~~~~~~p~~~~p~~~al~dl~~ 168 (382)
T 3kb9_A 93 LMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGA----WRRLRGLLHTALDSPGDHLHHEDTLVAGFADSVR 168 (382)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHSCGGGTTCSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHH----HHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHH
Confidence 466777754443 3445677888999999962 2 3332 222333344444442 245699999998876
Q ss_pred hC--CCCHHHHHHHHHHHH-------hcc---ccCCCCCCCCHHHHHHHHHhhhhHHHHHHH--HhcCCCCc-------c
Q 022166 98 EN--KISKGWLKRSVEARI-------NDA---NREISDIPEKIEDLEKYAEDTVSTLLYTTL--QAGGIKSA-------A 156 (301)
Q Consensus 98 ~~--~l~~~~l~~li~~~~-------~dl---~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~--~~lg~~~~-------~ 156 (301)
+. .+++.....+++++. ... .... ++|++|...+-..+.|.-..+.+ -.+|..-+ .
T Consensus 169 ~~~~~~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~---vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~p~ 245 (382)
T 3kb9_A 169 RLYAFLPATWNARFARHFHTVIEAYDREFHNRTRGI---VPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPA 245 (382)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhChH
Confidence 43 456655444444433 322 2233 78999999998777775433322 22354321 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhcCCCcc-cccHHHHHhCCCc
Q 022166 157 ADHAASHIGKASGLLLLLKSLPYHASRNRHFS-YIPAEVAANHGLL 201 (301)
Q Consensus 157 ~~~~a~~lG~alql~nilRd~~~d~~~~~gR~-yLP~d~l~~~gv~ 201 (301)
...+....+..+.++|=|-....... +|.+ -+-.-+|.++|++
T Consensus 246 ~~~l~~~~~~i~rL~NDi~S~~kE~~--~G~~~N~V~~~m~~~g~s 289 (382)
T 3kb9_A 246 YRRAALLSQEFAAWYNDLCSLPKEIA--GDEVHNLGISLITHHSLT 289 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCCSHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcccHHHHHHHcCCCC
Confidence 33456667777777777777777666 5653 3334467788877
No 38
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=90.60 E-value=3 Score=36.55 Aligned_cols=114 Identities=17% Similarity=0.049 Sum_probs=65.7
Q ss_pred HHHHHHHhccccCCCC-CCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhchh
Q 022166 108 RSVEARINDANREISD-IPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSLPY 179 (301)
Q Consensus 108 ~li~~~~~dl~~~~~~-~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~~~ 179 (301)
+++.|+..|+...... .-.|++++..-++.-.|++..+.+.+- |.+.+ ....++.++|.|+|+.+=+-|+-.
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~ 240 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTK 240 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4788999999754200 012445555445555566665555432 43322 356789999999999987777643
Q ss_pred hhhcCCCcccccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHh
Q 022166 180 HASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIEARPVLL 252 (301)
Q Consensus 180 d~~~~~gR~yLP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~~ 252 (301)
|. +.-+|. --.+..-.+.++++..+|.+.+..+|...+..+.
T Consensus 241 ~~-----K~T~p~--------------------------l~gle~a~~~a~~~~~~A~~~L~~l~~~~~~~L~ 282 (293)
T 2j1p_A 241 SS-----KLTYPK--------------------------LMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLL 282 (293)
T ss_dssp -------CCCHHH--------------------------HHHHHHHHHHHHHHHHHHHHHTTTSCTTTTHHHH
T ss_pred Cc-----cccHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 32 222331 1123444567788888888888888754444433
No 39
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=90.45 E-value=1.2 Score=39.68 Aligned_cols=137 Identities=9% Similarity=-0.018 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhc
Q 022166 105 WLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSL 177 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~ 177 (301)
...+++.|+..|+.... ..-.|++++..-++.-.|++..+.+.+- |.+.+ ...+++.++|.|+|+.|=+-|+
T Consensus 138 ~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~ 216 (325)
T 3aqb_B 138 TILEVCFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDY 216 (325)
T ss_dssp HHHHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35788999999997552 1136888888777777777777666543 33322 3567899999999999877775
Q ss_pred -----------hhhhhcCCCcccccHHHHH-hCC--Cchhcc----CCccccccCcHHH---HHHH-----HHHHHHHHH
Q 022166 178 -----------PYHASRNRHFSYIPAEVAA-NHG--LLVKEG----GRSEIHLDSREGL---CDAV-----FEMASVANV 231 (301)
Q Consensus 178 -----------~~d~~~~~gR~yLP~d~l~-~~g--v~~l~~----~~~~~~~~~~~~~---~~~~-----~~~~~~A~~ 231 (301)
+.|+. .|++-+|.=..- +.. ....+. .-..+. ..+.+ .+++ ......++.
T Consensus 217 ~~~~~~~GK~~g~Dl~--~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~ 292 (325)
T 3aqb_B 217 TSDEATLGKPVGSDIR--NGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTS--DDEVYQYIVSQVKQYGIEPAELLSRK 292 (325)
T ss_dssp HSCHHHHSSCTTHHHH--TTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTC--CHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cCChhhcCCccchHhh--CCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777 788999874432 111 001111 000000 11222 2222 223456788
Q ss_pred HHHHHHhhcCCCCCc
Q 022166 232 HLLKARELSGAVPIE 246 (301)
Q Consensus 232 ~l~~a~~~~~~lp~~ 246 (301)
+..+|.+.+..+|..
T Consensus 293 ~~~~A~~~L~~lp~~ 307 (325)
T 3aqb_B 293 YGDKAKYHLSQLQDS 307 (325)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 889999888888875
No 40
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=88.88 E-value=2.5 Score=37.20 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=50.4
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHh---c-CCCC----ccHHHHHHHHHHHHHHHHHHHhch
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQA---G-GIKS----AAADHAASHIGKASGLLLLLKSLP 178 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~---l-g~~~----~~~~~~a~~lG~alql~nilRd~~ 178 (301)
.+|+.|+..|+..... ..|++++..-...-.|++..+.+.+ + +..+ .....++.++|.|+|+.+=+-|+-
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~ 229 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVV 229 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678889999976531 4688888887777777776666554 2 2211 135678999999999998877764
Q ss_pred hh
Q 022166 179 YH 180 (301)
Q Consensus 179 ~d 180 (301)
-|
T Consensus 230 ~~ 231 (299)
T 1rqj_A 230 GD 231 (299)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 41
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=87.88 E-value=1.4 Score=39.70 Aligned_cols=88 Identities=11% Similarity=-0.135 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccccCCCC--CCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCC--ccHHHHHHHHHHHHHHHHHHHh
Q 022166 105 WLKRSVEARINDANREISD--IPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKS--AAADHAASHIGKASGLLLLLKS 176 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~~~--~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~--~~~~~~a~~lG~alql~nilRd 176 (301)
.+.+++.|+..|+...... ...|++++..-++.-.|++..+.+.+. |.+. .....++.++|.|+|+.+=+-|
T Consensus 139 ~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~l~~~g~~lG~aFQi~DD~ld 218 (340)
T 2e8v_A 139 ELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLVPFINLLGIIYQIRDDYLN 218 (340)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678889999998633100 035888888887777777777666543 3332 3456799999999999988877
Q ss_pred c-----------hhhhhcCCCcccccHHH
Q 022166 177 L-----------PYHASRNRHFSYIPAEV 194 (301)
Q Consensus 177 ~-----------~~d~~~~~gR~yLP~d~ 194 (301)
+ +.|+. .|++-+|.=.
T Consensus 219 ~~~~~~~~GK~~g~Dl~--egK~Tlp~i~ 245 (340)
T 2e8v_A 219 LKDFQMSSEKGFAEDIT--EGKLSFPIVH 245 (340)
T ss_dssp HHC-----CCCTTHHHH--TTCCCHHHHH
T ss_pred ccCChhhhCCCchhhHh--cCCchHHHHH
Confidence 6 36777 7888888643
No 42
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=86.19 E-value=6.5 Score=34.40 Aligned_cols=120 Identities=9% Similarity=-0.043 Sum_probs=69.2
Q ss_pred HHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHHHHHhch
Q 022166 106 LKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLLLLKSLP 178 (301)
Q Consensus 106 l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~nilRd~~ 178 (301)
+.+|+.|+..|+..... ..|.+++..-.+.-.|++..+.+.+- |.+++ ....++.++|.|+|+.+=+-|+-
T Consensus 144 ~~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~ 221 (291)
T 3npk_A 144 LNGMVIGQAIDCFFEDK--RLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVT 221 (291)
T ss_dssp TTTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCC--CCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678888899865421 46888888877777777776665542 43332 35678999999999999888886
Q ss_pred hhhhcCCCcccccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 022166 179 YHASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIE 246 (301)
Q Consensus 179 ~d~~~~~gR~yLP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 246 (301)
.|-.. .|+-. +. + .+. .+=.+.-.++.--..+++++.+|.+.+..++..
T Consensus 222 gd~~~-~GK~~---~~-------d--~gK------~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~ 270 (291)
T 3npk_A 222 TSQEQ-SGKPT---NN-------D--IHK------NSFVNLLGLEQAIKTKENLLNECEQDLEKLNEK 270 (291)
T ss_dssp -----------------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred CChHH-HCCcc---ch-------h--cCc------chHHHHHHHHHhHHHHHHHHHHHHHHHHHhchh
Confidence 65542 33321 10 0 111 111112223344456777778888777777653
No 43
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=84.60 E-value=8.4 Score=34.04 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=68.4
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc----cHHHHHHHHHHHHHHHHHHHhch
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA----AADHAASHIGKASGLLLLLKSLP 178 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~----~~~~~a~~lG~alql~nilRd~~ 178 (301)
.+|+.|+..|+.... .-.|.+++..-...-.|++..+.+.+- |.+++ ....++.++|.|+|+.+=+-|+-
T Consensus 159 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~ 236 (311)
T 3llw_A 159 KGMILGQALDCYFEN--TPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVT 236 (311)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhcC--CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457788888987552 146888888777777677666555442 44432 35578999999999999888886
Q ss_pred hhhhcCCCcccccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 022166 179 YHASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVP 244 (301)
Q Consensus 179 ~d~~~~~gR~yLP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp 244 (301)
-|-.. .|+ |.. + ..+. .+=.+.-.+..--..+++++.+|.+.+..++
T Consensus 237 gd~~~-~GK---~~g--------~-~~gK------~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~ 283 (311)
T 3llw_A 237 QDEEE-SGK---TTH--------L-DSAK------NSFVNLLGLERANNYAQTLKTEVLNDLDALK 283 (311)
T ss_dssp C--------------------------CC------SCHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred CChHH-HCc---ccc--------c-ccCc------chHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55432 232 111 1 1111 1111222334445677788888888777744
No 44
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=81.99 E-value=29 Score=31.27 Aligned_cols=138 Identities=12% Similarity=-0.068 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhccccCC-CCCCCCHHHHHHHHH-hhhhHHHHHHH---Hhc-CC--CC---ccHHHHHHHHHHHHHHHHH
Q 022166 105 WLKRSVEARINDANREI-SDIPEKIEDLEKYAE-DTVSTLLYTTL---QAG-GI--KS---AAADHAASHIGKASGLLLL 173 (301)
Q Consensus 105 ~l~~li~~~~~dl~~~~-~~~~~t~~dL~~Y~~-~~ag~vg~l~~---~~l-g~--~~---~~~~~~a~~lG~alql~ni 173 (301)
....+..|+..|+.... .....+.+++..-+. -+++-.+.+++ .++ |. ++ .....++..+|.|+|+.+=
T Consensus 176 ~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DD 255 (368)
T 2q58_A 176 SIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHND 255 (368)
T ss_dssp HHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999986432 111234555444333 34443233332 222 32 22 2467899999999999998
Q ss_pred HHh------chhhhhcCCCcccccHHHHHhCCCc---hhccCCccccccCcHHHHHHHH------HHHHHHHHHHHHHHh
Q 022166 174 LKS------LPYHASRNRHFSYIPAEVAANHGLL---VKEGGRSEIHLDSREGLCDAVF------EMASVANVHLLKARE 238 (301)
Q Consensus 174 lRd------~~~d~~~~~gR~yLP~d~l~~~gv~---~l~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~l~~a~~ 238 (301)
+-| ++.|+. .|++-+|.=..-+..-. ..+.... .. ..+.++++.. ...+.++..+..+..
T Consensus 256 iLD~~~gK~~g~Dl~--egK~T~p~i~al~~~~~~~r~~L~~~~-~~--~~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~ 330 (368)
T 2q58_A 256 VSDYLFNDSNADDIC--RFKLTWPLQKSFEIADEEMKLKISENY-GK--NSSLVKDCYNLLKINEHYLEYQRNALDYLIK 330 (368)
T ss_dssp HHHHHSCCCSSCTTT--SCCCCHHHHSSTTTCCHHHHHHHHHHT-TT--CHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccCCCCCchHh--cCCcHHHHHHHHHhCCHHHHHHHHHHh-CC--CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 888 568888 89999986421111000 0110000 00 1223333322 223456777888888
Q ss_pred hcCCCCCcc
Q 022166 239 LSGAVPIEA 247 (301)
Q Consensus 239 ~~~~lp~~~ 247 (301)
.+..+|...
T Consensus 331 ~i~~l~~~~ 339 (368)
T 2q58_A 331 LVKDITDDS 339 (368)
T ss_dssp HHTTCSCHH
T ss_pred HHHhccchh
Confidence 888888653
No 45
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=81.59 E-value=18 Score=31.42 Aligned_cols=107 Identities=14% Similarity=0.016 Sum_probs=64.2
Q ss_pred HHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHh---cCCCCc----cHHHHHHHHHHHHHHHHHHHhch
Q 022166 106 LKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQA---GGIKSA----AADHAASHIGKASGLLLLLKSLP 178 (301)
Q Consensus 106 l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~---lg~~~~----~~~~~a~~lG~alql~nilRd~~ 178 (301)
+.+|+.|+..|+.. .+++....+.-.|++..+.+.+ ++ .++ ....++.++|.|+|+.+=+-|+-
T Consensus 144 ~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~ 214 (289)
T 2azj_A 144 WKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYK 214 (289)
T ss_dssp HHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 56788888888863 2333444444455555444433 35 332 35678999999999998888873
Q ss_pred h----hhhcCCCcccccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022166 179 Y----HASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPI 245 (301)
Q Consensus 179 ~----d~~~~~gR~yLP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~ 245 (301)
. |+. .|.+-+|.=. .+.| ...++ ...++++..+|.+.+..+|.
T Consensus 215 ~~~K~dl~--~gk~Tlp~l~-~~~g------------------~~~a~---~~~a~~~~~~A~~~L~~lp~ 261 (289)
T 2azj_A 215 TKKVEEID--GSAKQLFKYY-REGK------------------LEEYV---RSVYLEYKQKYDELISNIPF 261 (289)
T ss_dssp TSCTTTCC--TTGGGGHHHH-TTTC------------------HHHHH---HHHHHHHHHHHHHHHHTSCC
T ss_pred CCCChhhh--cCcccHHHHH-HcCC------------------HHHHH---HHHHHHHHHHHHHHHHhCCC
Confidence 2 333 3445555432 1100 11111 23788888888888888886
No 46
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=80.49 E-value=29 Score=30.35 Aligned_cols=168 Identities=14% Similarity=0.131 Sum_probs=95.3
Q ss_pred HHhhcCChhh--hh-HHHHHHHHHHHHHHhcccCC--ChHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHhHhh--
Q 022166 28 LCLLELPPEL--RK-TAFALRAFNVETSKAMDIAS--DPRIGLMRLVWWKEAIDKIYVRKQ--IEHPVAQALASVLSE-- 98 (301)
Q Consensus 28 ~a~~~lp~~~--R~-~~~alyaf~r~~d~i~D~~~--~~~~~~~rL~~w~~~l~~~~~g~~--~~~Pv~~aL~~~~~~-- 98 (301)
+++.+.|... |- .+.-+.+|.-.+||+-|... +++. +..+.+.+.++..|.. ...|+..++.++..+
T Consensus 53 ~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee----~~~~~~~l~~~~~~~~p~~~~~~~~~l~d~~~~~~ 128 (337)
T 1ps1_A 53 LASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPED----TKQLTDQVAAALDGPLPDTAPPIAHGFADIWRRTC 128 (337)
T ss_dssp HHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHH----HHHHHHHHHGGGTSCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHH----HHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHh
Confidence 4566777443 33 34446788889999998762 3332 3344556666555542 356888888887653
Q ss_pred CCCCHHHHHHHHHH-------HHhccccCCCCCCC-CHHHHHHHHHhhhhHHHHHHHHh--cCCCCc-------cHHHHH
Q 022166 99 NKISKGWLKRSVEA-------RINDANREISDIPE-KIEDLEKYAEDTVSTLLYTTLQA--GGIKSA-------AADHAA 161 (301)
Q Consensus 99 ~~l~~~~l~~li~~-------~~~dl~~~~~~~~~-t~~dL~~Y~~~~ag~vg~l~~~~--lg~~~~-------~~~~~a 161 (301)
...++.....+++. ............++ |++|...+-..+.|.-..+.+-. +|..-+ ....+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~l~ 208 (337)
T 1ps1_A 129 EGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAML 208 (337)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHHHHH
Confidence 23455544444444 33322211111267 89999888777776544433322 244211 223566
Q ss_pred HHHHHHHHHHHHHHhchhhhhcCCCcc-cccHHHHHhCCCc
Q 022166 162 SHIGKASGLLLLLKSLPYHASRNRHFS-YIPAEVAANHGLL 201 (301)
Q Consensus 162 ~~lG~alql~nilRd~~~d~~~~~gR~-yLP~d~l~~~gv~ 201 (301)
...+..+.++|=|-....... +|-+ -.-.-+|.++|++
T Consensus 209 ~~~~~i~rL~NDl~S~~kE~~--~G~~~n~V~~~m~~~g~s 247 (337)
T 1ps1_A 209 QIAVDVNLLLNDIASLEKEEA--RGEQNNMVMILRREHGWS 247 (337)
T ss_dssp HHHHHHHHHHHHHHTHHHHHH--TTCCCSHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhhHHHHHh--cCCcchHHHHHHHHcCCC
Confidence 677777778887777777776 5552 3344567788877
No 47
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=78.13 E-value=41 Score=30.98 Aligned_cols=169 Identities=12% Similarity=0.004 Sum_probs=89.4
Q ss_pred HHhhcCChh-hhhHH---HHHHHHHHHHHHh-cccCC-ChHHHHHHHHHHHHHHHHH---hcCC------CCCCHHHHHH
Q 022166 28 LCLLELPPE-LRKTA---FALRAFNVETSKA-MDIAS-DPRIGLMRLVWWKEAIDKI---YVRK------QIEHPVAQAL 92 (301)
Q Consensus 28 ~a~~~lp~~-~R~~~---~alyaf~r~~d~i-~D~~~-~~~~~~~rL~~w~~~l~~~---~~g~------~~~~Pv~~aL 92 (301)
+++...|.. ..+.+ .-+..|.-.+||. .|+.+ ++.....++..++..++.+ ..|. .+.+|+..+|
T Consensus 162 laa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~~~~g~p~~~~~~~~dp~~~al 241 (433)
T 3v1v_A 162 YMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHSTAEYTPTWQASLAADAPRRAY 241 (433)
T ss_dssp HHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCCCTTTHHHHHHHTTSSHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhcccCCCCccccccCCchHHHHH
Confidence 456666755 34433 3345677788999 78743 2221122333333233211 1111 1367888999
Q ss_pred HHhHhhC--CCCHHHHHHHHHH-------HHhcc---ccCCCCCCCCHHHHHHHHHhhhhH-HHHHHHHhcCCCCc----
Q 022166 93 ASVLSEN--KISKGWLKRSVEA-------RINDA---NREISDIPEKIEDLEKYAEDTVST-LLYTTLQAGGIKSA---- 155 (301)
Q Consensus 93 ~~~~~~~--~l~~~~l~~li~~-------~~~dl---~~~~~~~~~t~~dL~~Y~~~~ag~-vg~l~~~~lg~~~~---- 155 (301)
.++.++. ..++.....+++. +.... .... ++|++|+..+-..+++. +..++....|..-.
T Consensus 242 ~d~~~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~---vPsleEYl~~R~~sg~~p~~~l~e~~~g~~lp~~v~ 318 (433)
T 3v1v_A 242 DSAMGYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGH---VPEVWEYLAMRQFNNFRPCPTITDTVGGYELPADLH 318 (433)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CCCHHHHHHHHHHSSSTTTGGGHHHHHTCCCCHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhHHHHHHHHHHHcCCCCCHHHH
Confidence 9887643 3444444444444 33222 2233 78999999887766322 11222222354321
Q ss_pred ---cHHHHHHHHHHHHHHHHHHHhchhhhhcCC-Ccc-cccHHHHHhCCCc
Q 022166 156 ---AADHAASHIGKASGLLLLLKSLPYHASRNR-HFS-YIPAEVAANHGLL 201 (301)
Q Consensus 156 ---~~~~~a~~lG~alql~nilRd~~~d~~~~~-gR~-yLP~d~l~~~gv~ 201 (301)
....+....+..+-++|=|-....... + |.+ -+-.-+|+++|++
T Consensus 319 ~~p~~~~L~~~~~~i~rL~NDI~Sy~kE~~--~gg~~~N~V~~~mke~g~S 367 (433)
T 3v1v_A 319 ARPDMQRVIALAGNATTIVNDLYSYTKELN--SPGRHLNLPVVIAEREQLC 367 (433)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHSHHHHTT--SSSCCCCHHHHHHHHHTCC
T ss_pred hCchHHHHHHHHHHHHHHhchHHHHHHHHh--cCCCCCcHHHHHHHhcCCC
Confidence 223455666777777777777666666 4 333 4555677788877
No 48
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=75.97 E-value=7.2 Score=33.78 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=45.0
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHHH
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLLL 172 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~n 172 (301)
.+++.|+..|+..... ..|.+++..-++.-.|++..+.+.+- |.+.+ ....++.++|.|+|+.+
T Consensus 149 ~~~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~D 219 (274)
T 3kra_B 149 EGMISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMME 219 (274)
T ss_dssp TTHHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999976531 46888888777777777777665542 33332 35678899999999964
No 49
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=74.58 E-value=40 Score=28.80 Aligned_cols=187 Identities=13% Similarity=0.045 Sum_probs=98.2
Q ss_pred HHhhcCChhh--hh-HHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHhHhhCC-
Q 022166 28 LCLLELPPEL--RK-TAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRK---QIEHPVAQALASVLSENK- 100 (301)
Q Consensus 28 ~a~~~lp~~~--R~-~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~~g~---~~~~Pv~~aL~~~~~~~~- 100 (301)
+++.+.|..- |- -+.-+..|.-.+||+-|.. ..... ..+-+.+.++..|. ....|+..+|.++.++..
T Consensus 49 ~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~~-~~~e~----~~~~~~~~~~~~~~~lp~~~~~~~~~l~d~~~~~~~ 123 (300)
T 1di1_A 49 VTCLYFPLALDDRIHFACRLLTVLFLIDDVLEHM-SFADG----EAYNNRLIPISRGDVLPDRTKPEEFILYDLWESMRA 123 (300)
T ss_dssp HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHHS-CHHHH----HHHHHHHHHHHHTSSCCCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHhccccC-CHHHH----HHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHh
Confidence 4556667433 33 4455788889999999984 33221 22333444433332 134688888777664321
Q ss_pred -C---CHHHHHHHHHHHHh--ccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHH--hcCCCCc-----cHHHHHHHHHHH
Q 022166 101 -I---SKGWLKRSVEARIN--DANREISDIPEKIEDLEKYAEDTVSTLLYTTLQ--AGGIKSA-----AADHAASHIGKA 167 (301)
Q Consensus 101 -l---~~~~l~~li~~~~~--dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~--~lg~~~~-----~~~~~a~~lG~a 167 (301)
. -++.+..++.++.. +..... ++|++|...+-..+.|.-..+.+- .+|..-+ ....+....+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~ea~~~~~~~---~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~ 200 (300)
T 1di1_A 124 HDAELANEVLEPTFVFMRAQTDRARLS---IHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQ 200 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCC---CCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHhccccCC---CCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 12224444555432 112223 789999998887777753333322 2354321 123455566666
Q ss_pred HHHHHHHHhchhhhhcCCCc---------ccccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHH
Q 022166 168 SGLLLLLKSLPYHASRNRHF---------SYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKAR 237 (301)
Q Consensus 168 lql~nilRd~~~d~~~~~gR---------~yLP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~ 237 (301)
+.++|=|-....... +|- .-.-.-+|.++|++ . +...+.+.++++.+...+....
T Consensus 201 ~~l~NDl~S~~kE~~--~g~~~h~~~~~~~n~V~~~m~~~g~s------------~-eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 201 LSVVNDIYSYDKEEE--ASRTGHKEGAFLCSAVKVLAEESKLG------------I-PATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHHHHHHHTTTTCC--C----------CCCHHHHHHHHHTCC------------H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHH--hhccccccccccchhHHHHHHHcCCC------------H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555 443 13445567777776 1 2233445555666655555554
No 50
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=74.52 E-value=44 Score=30.34 Aligned_cols=117 Identities=7% Similarity=-0.005 Sum_probs=64.1
Q ss_pred CHHHHHHHHHhhhhHH-HHHHH---Hh-cCCC-Cc----cHHHHHHHHHHHHHHHHHHHhc----------hhhhhcCCC
Q 022166 127 KIEDLEKYAEDTVSTL-LYTTL---QA-GGIK-SA----AADHAASHIGKASGLLLLLKSL----------PYHASRNRH 186 (301)
Q Consensus 127 t~~dL~~Y~~~~ag~v-g~l~~---~~-lg~~-~~----~~~~~a~~lG~alql~nilRd~----------~~d~~~~~g 186 (301)
|++++..-.+.=.|++ +.+.+ .+ .|.. ++ ....++.++|.|+|+.+=+-|+ +.|+. .|
T Consensus 231 t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~--eg 308 (395)
T 3mav_A 231 NFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ--NN 308 (395)
T ss_dssp SHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTT--TT
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHh--cC
Confidence 5666655555544443 22222 22 2443 21 3567889999999999888885 46777 78
Q ss_pred cccccHHHHHh-CCCc--h-hcc--CCccccccCcHHHHHHH------HHHHHHHHHHHHHHHhhcCCCCCcc
Q 022166 187 FSYIPAEVAAN-HGLL--V-KEG--GRSEIHLDSREGLCDAV------FEMASVANVHLLKARELSGAVPIEA 247 (301)
Q Consensus 187 R~yLP~d~l~~-~gv~--~-l~~--~~~~~~~~~~~~~~~~~------~~~~~~A~~~l~~a~~~~~~lp~~~ 247 (301)
++-+|.=..-+ ..-. . +.. +..++. ..+.++.++ ......++.+..++...+..+|...
T Consensus 309 K~T~p~i~al~~~~~~~r~~L~~~~~~~d~~--~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~ 379 (395)
T 3mav_A 309 KLTWPLIKTFELCSEPDKIKIVKNYGKNNLA--CVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEG 379 (395)
T ss_dssp CCCHHHHHHHHHSCHHHHHHHHHHTTCSCHH--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCCHH
T ss_pred CchHHHHHHHHhCCHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 88888754322 2111 1 111 111100 112233332 2233456778888888888888653
No 51
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=72.29 E-value=7.9 Score=33.47 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=38.9
Q ss_pred HHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc----CCCCc---cHHHHHHHHHHHHHHH
Q 022166 107 KRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG----GIKSA---AADHAASHIGKASGLL 171 (301)
Q Consensus 107 ~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l----g~~~~---~~~~~a~~lG~alql~ 171 (301)
.+|+.|+..|+.... -.+.+.++.-++.-.|.+..+.+.+- |.+++ ....++.++|.|+|+.
T Consensus 151 ~~~~~GQ~lDl~~~~---~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~ 219 (273)
T 3qkc_B 151 EGIVEGQYHELGLNQ---LNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLL 219 (273)
T ss_dssp TTHHHHHHHHTTCCS---SCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCC---CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999998754 34665555443444555555555442 44332 3557888888888886
No 52
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=72.21 E-value=69 Score=30.49 Aligned_cols=185 Identities=11% Similarity=-0.020 Sum_probs=92.8
Q ss_pred hcCChh--hhhHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhc---CCCCC--CHHHHHHHHhHhh-----
Q 022166 31 LELPPE--LRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYV---RKQIE--HPVAQALASVLSE----- 98 (301)
Q Consensus 31 ~~lp~~--~R~~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~~---g~~~~--~Pv~~aL~~~~~~----- 98 (301)
.|-|.. .|-.+.=+.++.-.+||+-|..+..+. ++-+-+++++.-. +..|. .++..+|.+++..
T Consensus 279 ~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eE----l~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~ 354 (549)
T 1n1b_A 279 FEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDE----LELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDI 354 (549)
T ss_dssp CCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHH----HHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHH----HHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHH
Confidence 443533 344444567788889999998765432 2333344433211 11222 3556666666542
Q ss_pred ---CCCC-----HHHHHHHHHHHHh---ccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhcCCCC---ccH-H-----
Q 022166 99 ---NKIS-----KGWLKRSVEARIN---DANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKS---AAA-D----- 158 (301)
Q Consensus 99 ---~~l~-----~~~l~~li~~~~~---dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~lg~~~---~~~-~----- 158 (301)
++.. ++.+.++++++.. +..... .||++|.......+.|..-.++...++... .++ .
T Consensus 355 ~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~---vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~ 431 (549)
T 1n1b_A 355 LKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGY---TPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQ 431 (549)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHT
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcc
Confidence 1211 3445666666543 333444 689999999988887765555555554322 222 2
Q ss_pred --HHHHHHHHHHHHHHHHHhchhhhhcCCCcc-cccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHH
Q 022166 159 --HAASHIGKASGLLLLLKSLPYHASRNRHFS-YIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLK 235 (301)
Q Consensus 159 --~~a~~lG~alql~nilRd~~~d~~~~~gR~-yLP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 235 (301)
.+....+..+.+.|=|........ +|.+ -.=.-.|.++|++ .+...+-+..+++.+...+.+
T Consensus 432 ~p~i~~~~~~i~RL~NDi~S~~~E~~--rG~v~n~V~cyMke~g~s-------------~eeA~~~i~~~i~~~wk~ln~ 496 (549)
T 1n1b_A 432 YHDILCLAGIILRLPDDLGTSYFELA--RGDVPKTIQCYMKETNAS-------------EEEAVEHVKFLIREAWKDMNT 496 (549)
T ss_dssp TCHHHHHHHHHHHHHHHHC-----------CCCCHHHHHHHHHCCC-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccchhhhhhc--cCCccHHHHHHHHHcCCC-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 233333444444444444444444 5543 1112457777776 123344566777777776666
Q ss_pred HH
Q 022166 236 AR 237 (301)
Q Consensus 236 a~ 237 (301)
..
T Consensus 497 e~ 498 (549)
T 1n1b_A 497 AI 498 (549)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 53
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=66.54 E-value=74 Score=28.65 Aligned_cols=165 Identities=6% Similarity=-0.057 Sum_probs=86.5
Q ss_pred HHhhcCC---hhhhhHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhh--CCCC
Q 022166 28 LCLLELP---PELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSE--NKIS 102 (301)
Q Consensus 28 ~a~~~lp---~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~~g~~~~~Pv~~aL~~~~~~--~~l~ 102 (301)
++++..| .+....+.-+..|.-.+||+.|+.. ..+..+.+.+ ..|.++.||++.++.+..++ ...+
T Consensus 73 laar~YP~a~~e~l~liad~~~~~F~lDD~~d~~~------~~l~~~~~~l---l~G~~~~~Pl~~al~dl~~rl~~~~~ 143 (374)
T 1yyq_A 73 MVVYSWAKVSKECMADLSIHYTYTLVLDDSKDDPY------PTMVNYFDDL---QAGREQAHPWWALVNEHFPNVLRHFG 143 (374)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHHHHTTCCSCSH------HHHTTHHHHH---HHTCCCSSHHHHHHHHHHHHHHTTSC
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHhhcccccCcH------HHHHHHHHHH---hcCCCCCChHHHHHHHHHHHHHHhcC
Confidence 5566666 4455555556778888999988643 1233333332 23777789999999998864 4667
Q ss_pred HHHHHHHHHHHHhcccc-----CCCCCCCCHHHHHHHHHhhhhHHHHHHHHhcCCC--Cc-----cHHHHHHHHHHHHHH
Q 022166 103 KGWLKRSVEARINDANR-----EISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIK--SA-----AADHAASHIGKASGL 170 (301)
Q Consensus 103 ~~~l~~li~~~~~dl~~-----~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~lg~~--~~-----~~~~~a~~lG~alql 170 (301)
+.+...++.++...+.. ..-...++.+++..|.+...|..-....-+++.. ++ ....+...+...+-.
T Consensus 144 p~~~~rf~~s~~~~~~a~~~Ea~n~~~~p~~~~Y~~~rR~~sG~~E~~~~~~~P~~~~~e~~~~~~~~~~i~am~~~i~~ 223 (374)
T 1yyq_A 144 PFCSLNLIRSTLDFFEGCWIEQYNFGGFPGSHDYPQFLRRMNGLGHCVGASLWPKEQFNERSLFLEITSAIAQMENWMVW 223 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCTTHHHHHHHHHHCHHHHHHTTCCTTTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhccHHHHHHHhhccccccchhhcchhHHHHHHHHHHHHHh
Confidence 77755555554443321 1111245666676666666665322222233221 11 123444455544444
Q ss_pred HHHHHhchhhhhcCCCcccccHHHHHhCCCc
Q 022166 171 LLLLKSLPYHASRNRHFSYIPAEVAANHGLL 201 (301)
Q Consensus 171 ~nilRd~~~d~~~~~gR~yLP~d~l~~~gv~ 201 (301)
+|=|=+.+..........-+...+...+|++
T Consensus 224 ~NDIlSf~KE~~~~Gd~~NlV~vl~~~~g~S 254 (374)
T 1yyq_A 224 VNDLMSFYKEFDDERDQISLVKNYVVSDEIS 254 (374)
T ss_dssp HHHHHHHHHHTTCSSCCCCHHHHHHHHHTCC
T ss_pred hhhhhccchhhhccCCccchhhhehhcCCCC
Confidence 4433333333321012445556666666655
No 54
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=55.55 E-value=1.4e+02 Score=28.39 Aligned_cols=106 Identities=12% Similarity=0.063 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhc---CCCC--CCHHHHHHHHhHhh--------CCCC--
Q 022166 38 RKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYV---RKQI--EHPVAQALASVLSE--------NKIS-- 102 (301)
Q Consensus 38 R~~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~~---g~~~--~~Pv~~aL~~~~~~--------~~l~-- 102 (301)
|-.+.=+.++.-.+||+-|..+..+. ++.+-+++.+.-. +..| -.++..+|.+++.. ++..
T Consensus 309 Rl~~aK~~~litviDD~fD~ygT~eE----l~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~ 384 (569)
T 2j5c_A 309 RIMLTKINALVTTIDDVFDIYGTLEE----LQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDST 384 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHH----HHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHH----HHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 44333467788889999998765533 3333444443211 1112 23456666665542 1211
Q ss_pred ---HHHHHHHHHHHHhc---cccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc
Q 022166 103 ---KGWLKRSVEARIND---ANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG 150 (301)
Q Consensus 103 ---~~~l~~li~~~~~d---l~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l 150 (301)
++.+.++++++... ..... .||++|.......+.|..-.++...+
T Consensus 385 ~~l~~~w~~l~~ayl~EAkW~~~g~---vPt~eEYl~~~~vSsg~~~l~~~~~~ 435 (569)
T 2j5c_A 385 PYLRKVWVGLIESYLIEAKWYYKGH---KPSLEEYMKNSWISIGGIPILSHLFF 435 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC---CCCHHHHHhcccccchHHHHHHHHHH
Confidence 34456666665533 33343 68999998888777765444444333
No 55
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=45.49 E-value=2e+02 Score=27.15 Aligned_cols=185 Identities=9% Similarity=-0.075 Sum_probs=98.8
Q ss_pred hcCChh--hhhHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhc---CCCCC--CHHHHHHHHhHhh-----
Q 022166 31 LELPPE--LRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYV---RKQIE--HPVAQALASVLSE----- 98 (301)
Q Consensus 31 ~~lp~~--~R~~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~~---g~~~~--~Pv~~aL~~~~~~----- 98 (301)
.|-|.. .|-.+.=+.++.-.+||+-|..+..+. ++.+-+++.+.-. +..|. .++..+|.+++.+
T Consensus 273 ~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eE----l~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~ 348 (543)
T 2ong_A 273 IEPRQHASARIMMGKVNALITVIDDIYDVYGTLEE----LEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDV 348 (543)
T ss_dssp TCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHH----HHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHH----HHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 443533 344344467788889999998765432 3444455543211 11121 3566677666542
Q ss_pred ---CCCC-----HHHHHHHHHHHHhc---cccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc--CCCC-ccHH------
Q 022166 99 ---NKIS-----KGWLKRSVEARIND---ANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG--GIKS-AAAD------ 158 (301)
Q Consensus 99 ---~~l~-----~~~l~~li~~~~~d---l~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l--g~~~-~~~~------ 158 (301)
++.. ++.+.++++++... ..... .||++|.......+.|..-.++...+ |..- .++.
T Consensus 349 ~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~---vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~ 425 (543)
T 2ong_A 349 MKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGH---KPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKY 425 (543)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTT
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhccc
Confidence 1211 34456666665533 33343 68999998888777775544444333 3321 1111
Q ss_pred -HHHHHHHHHHHHHHHHHhchhhhhcCCCcc-cccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHHH
Q 022166 159 -HAASHIGKASGLLLLLKSLPYHASRNRHFS-YIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKA 236 (301)
Q Consensus 159 -~~a~~lG~alql~nilRd~~~d~~~~~gR~-yLP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a 236 (301)
.+....+...-+.|=|........ +|-+ -.=.-.|.++|++ . +...+-+..+++.+...+.+.
T Consensus 426 p~i~~~~~~i~RL~NDi~S~~~E~~--rG~~~n~V~cyMke~g~s------------~-eeA~~~i~~~ie~~wk~ln~e 490 (543)
T 2ong_A 426 HDLVRWSSFVLRLADDLGTSVEEVS--RGDVPKSLQCYMSDYNAS------------E-AEARKHVKWLIAEVWKKMNAE 490 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHSSHHHHH--TSCCCCHHHHHHHHTCCC------------H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhhhccc--cCCccHHHHHHHHHcCCC------------H-HHHHHHHHHHHHHHHHHHHHH
Confidence 233444445555555555555555 5553 1113457777776 1 223345667777777777664
Q ss_pred H
Q 022166 237 R 237 (301)
Q Consensus 237 ~ 237 (301)
.
T Consensus 491 ~ 491 (543)
T 2ong_A 491 R 491 (543)
T ss_dssp H
T ss_pred h
Confidence 3
No 56
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=43.48 E-value=1.6e+02 Score=25.25 Aligned_cols=164 Identities=14% Similarity=0.080 Sum_probs=85.0
Q ss_pred HHhhcCChh--hhh-HHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHhHhhCCC
Q 022166 28 LCLLELPPE--LRK-TAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRK---QIEHPVAQALASVLSENKI 101 (301)
Q Consensus 28 ~a~~~lp~~--~R~-~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~~g~---~~~~Pv~~aL~~~~~~~~l 101 (301)
+++.+.|.. .|- .+.-+.+|.-.+||+-|.. ..... ..+.+.+.++..|. ....|+..+|.++.++..-
T Consensus 63 ~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~-~~~e~----~~~~~~l~~~~~~~~~p~~~~~~~~al~d~~~e~~~ 137 (320)
T 3bny_A 63 VTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYM-SFEEG----SAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRA 137 (320)
T ss_dssp HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTTS-CHHHH----HHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHH
T ss_pred hHhhhCCCCCHHHHHHHHHHHHHHHHhhcccccC-ChhhH----HHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 455666743 233 4456788999999999984 33221 22233444433332 1356888888776543210
Q ss_pred -CHHHHHH----HHHHHHh--ccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHH--hcCCCCc-cH----HHHHHHHHHH
Q 022166 102 -SKGWLKR----SVEARIN--DANREISDIPEKIEDLEKYAEDTVSTLLYTTLQ--AGGIKSA-AA----DHAASHIGKA 167 (301)
Q Consensus 102 -~~~~l~~----li~~~~~--dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~--~lg~~~~-~~----~~~a~~lG~a 167 (301)
.+....+ ++..+.. +..... ++|++|...+-..+.|.-..+.+- .+|..-+ +. ..+....+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~---~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~ 214 (320)
T 3bny_A 138 HDREMADEILEPVFLFMRAQTDRTRAR---PMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKH 214 (320)
T ss_dssp HHHHHHHHTHHHHHHHHHHTSCCCCCC---CCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHhhhccCC---CCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 0222222 2322211 112223 789999988887777753333222 2354321 12 3455556666
Q ss_pred HHHHHHHHhchhhhhcCCCc---------ccccHHHHHhCCCc
Q 022166 168 SGLLLLLKSLPYHASRNRHF---------SYIPAEVAANHGLL 201 (301)
Q Consensus 168 lql~nilRd~~~d~~~~~gR---------~yLP~d~l~~~gv~ 201 (301)
+.++|=|-....... +|- .-.-.-+|.++|++
T Consensus 215 ~~L~NDl~S~~kE~~--~g~~~~~~~~~~~N~V~~~m~~~g~s 255 (320)
T 3bny_A 215 LSVVNDIYSYEKELY--TSKTAHSEGGILCTSVQILAQEADVT 255 (320)
T ss_dssp HHHHHHHHHHHHHCC-------------CCSHHHHHHHHHTCC
T ss_pred HHHhcccchhHHHHH--hhcccccccccccchHHHHHHHcCCC
Confidence 666666666555555 443 23445567777777
No 57
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=42.96 E-value=2.3e+02 Score=26.98 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHh---cCCCCCC--HHHHHHHHhHh--------hCCC--
Q 022166 37 LRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIY---VRKQIEH--PVAQALASVLS--------ENKI-- 101 (301)
Q Consensus 37 ~R~~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~---~g~~~~~--Pv~~aL~~~~~--------~~~l-- 101 (301)
.|-.+.=+.++.-.+||+-|..+..+. |+-+-+++++.- .+..|.. ++..+|.+++. ..+.
T Consensus 292 ~R~~~aK~~~l~tviDD~yD~ygTleE----l~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~ 367 (554)
T 3g4d_A 292 GRKMLTKVIAMASIVDDTYDSYATYEE----LIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYR 367 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCHHH----HHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHH----HHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 355556677888999999998765432 222333333211 0112222 45566666543 2221
Q ss_pred ---CHHHHHHHHHHHHhccc---cCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhcCCC
Q 022166 102 ---SKGWLKRSVEARINDAN---REISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIK 153 (301)
Q Consensus 102 ---~~~~l~~li~~~~~dl~---~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~lg~~ 153 (301)
-++.+.++++++..... ... .||++|.......+.|..-.++...+|..
T Consensus 368 ~~ylk~~w~~l~~ayl~EAkW~~~gy---vPT~EEYl~na~vSsg~~~l~~~~~~~mg 422 (554)
T 3g4d_A 368 VEYAKNAMIRLAQSYLVEAKWTLQNY---KPSFEEFKANALPTCGYAMLAITSFVGMG 422 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC---CCCHHHHHHHHGGGSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CCCHHHHHhccceeehHHHHHHHHHHhcC
Confidence 12345666776655433 233 68999999998887777655555555543
No 58
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=42.01 E-value=2.3e+02 Score=26.88 Aligned_cols=178 Identities=13% Similarity=0.015 Sum_probs=90.8
Q ss_pred hhhHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhc---CCCCCC--HHHHHHHHhHh--------hCCCC-
Q 022166 37 LRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYV---RKQIEH--PVAQALASVLS--------ENKIS- 102 (301)
Q Consensus 37 ~R~~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~~---g~~~~~--Pv~~aL~~~~~--------~~~l~- 102 (301)
.|-.+.=+.++.-.+||+-|..+..+. |+-+-+++++.-. +..|.. ++..+|.+++. .++..
T Consensus 290 ~R~~~aK~~~l~tviDD~yD~ygt~eE----l~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~ 365 (555)
T 3n0f_A 290 CRNSVAKMFSFVTIIDDIYDVYGTLDE----LELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENI 365 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHH----HHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHhccccCCHHH----HHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 366566677889999999998765432 2222333332110 111221 35556655543 22211
Q ss_pred ----HHHHHHHHHHHHhcc---ccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhc--CCC-CccHH-------HHHHHHH
Q 022166 103 ----KGWLKRSVEARINDA---NREISDIPEKIEDLEKYAEDTVSTLLYTTLQAG--GIK-SAAAD-------HAASHIG 165 (301)
Q Consensus 103 ----~~~l~~li~~~~~dl---~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~l--g~~-~~~~~-------~~a~~lG 165 (301)
++.+.+++.++.... .... .||++|.......+.|..-.++...+ |.. +.++. ......+
T Consensus 366 ~~~l~~~w~~l~~ayl~EAkW~~~gy---vPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~ 442 (555)
T 3n0f_A 366 LPYLTKAWADLCNAFLQEAKWLYNKS---TPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPS 442 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC---CCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHH
Confidence 234566666665433 2333 78999999998887776444443333 432 12222 2333334
Q ss_pred HHHHHHHHHHhchhhhhcCCCccc-ccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHHH
Q 022166 166 KASGLLLLLKSLPYHASRNRHFSY-IPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKA 236 (301)
Q Consensus 166 ~alql~nilRd~~~d~~~~~gR~y-LP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a 236 (301)
..+.|.|=|........ +|-+- .=.-.|.++|++. +...+-+..+++.+...+.+.
T Consensus 443 ~i~RL~NDi~S~~~E~~--rG~vas~V~cYMke~GvSe-------------EeA~~~i~~~Ie~~wK~lN~e 499 (555)
T 3n0f_A 443 HIFRLCNDLASASAEIA--RGETANSVSCYMRTKGISE-------------ELATESVMNLIDETWKKMNKE 499 (555)
T ss_dssp HHHHHHHHHHHHHHHHT--TTCCCSHHHHHHHHHTCCH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhhhhhh--cCCcchHHHHHHHHcCCCH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433334 56541 1133577778771 233445667777776655543
No 59
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=37.27 E-value=79 Score=25.28 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhhC-CCCHHHHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhh
Q 022166 63 IGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSEN-KISKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVS 140 (301)
Q Consensus 63 ~~~~rL~~w~~~l~~~~~g~~~~~Pv~~aL~~~~~~~-~l~~~~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag 140 (301)
....++..|+|.|-. .| +++ +..++..| ..+...|+.+|..-........ ++...-+|-.|+..++.
T Consensus 103 ~~~h~lE~wRdrLi~--~g----d~a---l~e~~~~~P~~DrQ~LRqLiR~A~kE~~~~k--ppka~ReLFqyLr~~~~ 170 (176)
T 2p0t_A 103 ERFHNLERWRDRLIA--GD----DAD---LEKFVIEYPDADRQQLRSLIRQAQHEVARNK--PPATSRKIFKYIRELDE 170 (176)
T ss_dssp HHHHHHHHHHHHHHH--SC----HHH---HHHHHHHSTTSCHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CC----HHH---HHHHHHHCchhhHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHh
Confidence 345578899988632 22 343 44445555 6789999999988877776543 15678899999887543
No 60
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=34.74 E-value=3e+02 Score=26.07 Aligned_cols=178 Identities=11% Similarity=0.007 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhc---CCCCCC--HHHHHHHHhHh--------hCCC-C
Q 022166 37 LRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYV---RKQIEH--PVAQALASVLS--------ENKI-S 102 (301)
Q Consensus 37 ~R~~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~~---g~~~~~--Pv~~aL~~~~~--------~~~l-~ 102 (301)
.|-.+.=+.++.-.+||+-|..+..+. |+-+-+++++.-. +..|.. ++..+|.+++. ..+. .
T Consensus 288 ~R~~~aK~~~l~tviDD~yD~ygTleE----l~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~ 363 (550)
T 3m00_A 288 ARVMLVKTISMISIVDDTFDAYGTVKE----LEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHI 363 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHH----HHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHHHHHHHHHHHHHHHHHccccCCHHH----HHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 366566677888999999998765432 2223333333110 111221 34555555543 2221 1
Q ss_pred ----HHHHHHHHHHHHhccc---cCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhcCCC--CccHHH-------HHHHHHH
Q 022166 103 ----KGWLKRSVEARINDAN---REISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIK--SAAADH-------AASHIGK 166 (301)
Q Consensus 103 ----~~~l~~li~~~~~dl~---~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~lg~~--~~~~~~-------~a~~lG~ 166 (301)
++.+.++++++..... ... .||++|.......+.|....+++..+|.. +.++.+ .....+.
T Consensus 364 ~~ylk~~w~~l~~ayl~EAkW~~~gy---vPT~EEYl~na~vSsg~~~l~~~~f~g~~~lt~e~~e~~~~~p~i~~~~~~ 440 (550)
T 3m00_A 364 VCHAIERMKEIVRNYNVESTWFIEGY---TPPVSEYLSNALATTTYYLLATTSYLGMKSATEQDFEWLSKNPKILEASVI 440 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CCCHHHHHHHHTGGGSHHHHHHHHHHTCTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CCCHHHHHHhccccchHHHHHHHHHHcCCCCcHHHHHhhcccHHHHHHHhh
Confidence 2345666766654332 233 68999999998888887655555566752 122222 2233333
Q ss_pred HHHHHHHHHhchhhhhcCCCcc-cccHHHHHhCCCchhccCCccccccCcHHHHHHHHHHHHHHHHHHHHH
Q 022166 167 ASGLLLLLKSLPYHASRNRHFS-YIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKA 236 (301)
Q Consensus 167 alql~nilRd~~~d~~~~~gR~-yLP~d~l~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a 236 (301)
-+-|.|=|........ +|-+ -.=.-.|.++|++ . +...+-+..+++.+...+.+.
T Consensus 441 I~RL~NDI~S~k~E~~--rG~vas~V~cYMke~GvS------------e-EeA~~~i~~~Ie~~wK~lN~e 496 (550)
T 3m00_A 441 ICRVIDDTATYEVEKS--RGQIATGIECCMRDYGIS------------T-KEAMAKFQNMAETAWKDINEG 496 (550)
T ss_dssp HHHHHHHHHSHHHHHH--TTCTTSHHHHHHHHHTCC------------H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeccchhHHHHHh--cCCcccHHHHHHHhcCCC------------H-HHHHHHHHHHHHHHHHHHHHH
Confidence 3333443333333344 5654 1123357777877 1 223444667777776655544
No 61
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=34.01 E-value=20 Score=23.18 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=16.4
Q ss_pred CCcccccHHHHHhCCCc
Q 022166 185 RHFSYIPAEVAANHGLL 201 (301)
Q Consensus 185 ~gR~yLP~d~l~~~gv~ 201 (301)
.|++.||.++.++.|+.
T Consensus 21 kGqItIPkeiR~~Lgi~ 37 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIA 37 (59)
T ss_dssp TCEEECCHHHHHHTTCC
T ss_pred CCEEEeCHHHHHHcCCC
Confidence 79999999999999998
No 62
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=31.83 E-value=28 Score=21.72 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=16.3
Q ss_pred CCcccccHHHHHhCCCc
Q 022166 185 RHFSYIPAEVAANHGLL 201 (301)
Q Consensus 185 ~gR~yLP~d~l~~~gv~ 201 (301)
.|++.||.++.++.|+.
T Consensus 11 kgqi~IPk~ir~~lgi~ 27 (53)
T 2l66_A 11 NYQVTIPAKVRQKFQIK 27 (53)
T ss_dssp SSCBCCCHHHHHHSCCC
T ss_pred CCEEEeCHHHHHHcCcC
Confidence 79999999999999998
No 63
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=31.67 E-value=1.3e+02 Score=21.05 Aligned_cols=52 Identities=13% Similarity=-0.176 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchhHHhhHhHHHHHHHHHHhCCCCCCCc
Q 022166 221 AVFEMASVANVHLLKARELSGAVPIEARPVLLESVPAQVLLDSLNRVQFDVFDP 274 (301)
Q Consensus 221 ~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~~~~~~~~~~L~~l~~~~~~v~~~ 274 (301)
...++.+.|+.++..++.+++. .+.-.+|.....+.+.|+.++-.++.+|-.
T Consensus 31 ~a~~~l~mA~~Y~~Da~~fl~k--GD~v~Ala~isYa~GwLDAlR~~~~~~~~~ 82 (87)
T 2pmr_A 31 DEEAVVERALNYRDDSVYYLEK--GDHITSFGCITYAHGLLDSLRMLHRIIEGH 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4467788899999999888764 233467777778999999998888888744
No 64
>1yyp_B DNA polymerase, POL; processivity fold (SAME fold AS HSV UL42, PCNA, and homotrim sliding clamps), replication-transferase complex; HET: DNA; 2.50A {Human herpesvirus 5}
Probab=20.47 E-value=35 Score=18.22 Aligned_cols=12 Identities=0% Similarity=-0.178 Sum_probs=9.4
Q ss_pred CcccccHHHHHh
Q 022166 186 HFSYIPAEVAAN 197 (301)
Q Consensus 186 gR~yLP~d~l~~ 197 (301)
.|+|||...|.-
T Consensus 3 ~RiYl~~~Fl~~ 14 (26)
T 1yyp_B 3 RRLHLEPAFLPY 14 (26)
T ss_pred ceEecCHHHHHH
Confidence 489999888753
Done!