BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022167
(301 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255566078|ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 508
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/296 (74%), Positives = 252/296 (85%), Gaps = 1/296 (0%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGLSAGKRLLSS+FYYSD++EK S N+ G + Q+ STK ++ AKKSSNY PS
Sbjct: 1 MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFA-STAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120
FPSSNR TQ IKALKEHVDT A STA + N +EEESS+LDYSVEALLLLQKSMLE
Sbjct: 61 FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120
Query: 121 KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQL 180
KQWNLSFERT +DSPS+K+ KK+PVTCSGVSARQRR+N ++K LSQ+K +Q N KQL
Sbjct: 121 KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQL 180
Query: 181 RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240
+S +SPEL+QNRLKGYVKGVVSEELL+HAEVVRLS+ IK GLSL+DHK RLKERLGC+PS
Sbjct: 181 KSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPS 240
Query: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EQ+A SL+ISR ELQS + CSLAREKL MSNVRLVMSIAQRYDNMGA+MADLVQ
Sbjct: 241 DEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQ 296
>gi|224146103|ref|XP_002325882.1| predicted protein [Populus trichocarpa]
gi|222862757|gb|EEF00264.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/297 (71%), Positives = 246/297 (82%), Gaps = 1/297 (0%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
MMATAAVIGLS+GKRLLSSSFYYSD++EK S +ND G +TKNV+ AKKSSNY P
Sbjct: 1 MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60
Query: 61 SFPSSNRQTQPIKALKEHVDTNFAST-AEPWAEPPNSIEEESSELDYSVEALLLLQKSML 119
SFPSSNR + IKALKEHVDT AS+ W + + EEESS LDYSVEALLLLQKSML
Sbjct: 61 SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120
Query: 120 EKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQ 179
EKQWNLSFERT +DS SKK +KK+PVTCSGVSARQRR+N+++K +Q+K + Q + K
Sbjct: 121 EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180
Query: 180 LRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239
LRS+ SP+L+QNRLKGYVKGVVS+E+L H EVVRLS+ I+ GLS +DHK RLKERLGCEP
Sbjct: 181 LRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240
Query: 240 SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S EQ+A SLRISR +LQS L++CSLAREKL MSNVRLVMSIAQ+YDNMGA+MADLVQ
Sbjct: 241 SDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQ 297
>gi|449468291|ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
gi|449514942|ref|XP_004164521.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
Length = 508
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/297 (69%), Positives = 245/297 (82%), Gaps = 2/297 (0%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
MMATAA+IGL A KRLL+SS YYSD +EK Y ND +QV S+K+VV AK S+N++P
Sbjct: 1 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60
Query: 61 SFPSSNRQTQP-IKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSML 119
+PSSNR +Q IKA+KEHV+T + AEPW S E+E +EL Y+VEALLLLQKSML
Sbjct: 61 RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWHNT-TSWEDEETELKYTVEALLLLQKSML 119
Query: 120 EKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQ 179
EKQW+LSFE+TV TD+P +KT KKVPVTCSGVSARQRR++SK+KI S++ + Q SKQ
Sbjct: 120 EKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 179
Query: 180 LRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239
LR ISPEL+QNRLKGYVKG++SEELL+HAEVVRLSKKIK GL+L++ K RLK+RLGCEP
Sbjct: 180 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEP 239
Query: 240 SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S +QLA SL+ISR EL+S +ME SLAREKL MSNVRLVMSIAQRYDNMGA+MADLVQ
Sbjct: 240 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQ 296
>gi|356543070|ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/298 (67%), Positives = 248/298 (83%), Gaps = 10/298 (3%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGLS GKRLLSSS++YSDI EK SY +D GS + Q+ TK+++ AKKSSNY P+
Sbjct: 1 MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNS--IEEESSELDYSVEALLLLQKSML 119
FP+SN+Q Q IKALKEHVD + + A+PW + NS +E ESSE+ YSVEALLLLQKSML
Sbjct: 61 FPASNQQNQSIKALKEHVD-DAPTIADPWFQSYNSNDLEVESSEMGYSVEALLLLQKSML 119
Query: 120 EKQWNLSFERTVLTDSPSK-KTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSK 178
EKQWNLSFER VLT++ SK K +KV VTCSGVSARQRR+N+K+K + ++ G+
Sbjct: 120 EKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTKRK------TAIKTCGAM 173
Query: 179 QLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE 238
QL+S ISPEL+Q+RLKGYVKG+VSEELL+HAEVV LS+KIK GLSL++HK RLKE+LGCE
Sbjct: 174 QLKSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCE 233
Query: 239 PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
PS +Q+A SL+ISR EL++ ++ECSLAREKL MSNVRLVMSIAQ+YDN+GA+M DLVQ
Sbjct: 234 PSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQ 291
>gi|356531599|ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/298 (67%), Positives = 247/298 (82%), Gaps = 10/298 (3%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGLS GKRLLSSS++YSD+ EK SY +D GS + Q+ TK+++AAKKSSNY P+
Sbjct: 1 MATAAVIGLSGGKRLLSSSYHYSDVIEKLSYGSDFGSTHYQIVPTKSLIAAKKSSNYTPT 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNS--IEEESSELDYSVEALLLLQKSML 119
FP+SN+Q Q IKALKEHVD + + A+ W + NS +E ESSE+ YSVEALLLLQKSML
Sbjct: 61 FPASNQQNQSIKALKEHVD-DAPTIADSWFQSCNSNDLEVESSEMGYSVEALLLLQKSML 119
Query: 120 EKQWNLSFERTVLTDSPSK-KTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSK 178
EKQWNLSFER VLT+ SK K KKV VTCSGVSARQRR+N+K+K + ++ G+
Sbjct: 120 EKQWNLSFEREVLTEHSSKGKKCKKVAVTCSGVSARQRRMNTKRK------TAIKTCGAM 173
Query: 179 QLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE 238
QL+S ISPEL+Q+RLKGYVKG+VSEELL+HAEVV LS++IK GLSL++HK RLKERLGCE
Sbjct: 174 QLKSKISPELLQHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRLKERLGCE 233
Query: 239 PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
PS +Q+A SL+ISR EL++ ++EC+LAREKL MSNVRLVMSIAQ+YDN+GA+M DLVQ
Sbjct: 234 PSDDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQ 291
>gi|224124068|ref|XP_002319237.1| predicted protein [Populus trichocarpa]
gi|222857613|gb|EEE95160.1| predicted protein [Populus trichocarpa]
Length = 499
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 200/297 (67%), Positives = 233/297 (78%), Gaps = 11/297 (3%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
MMATA+ IGL+ GKRLLSSSFY+SD++EK S +ND G A+ Q+ +TK+V+ AKKSS Y P
Sbjct: 1 MMATASFIGLTTGKRLLSSSFYFSDLTEKLSNVNDHGVAHYQITTTKSVIVAKKSSKYGP 60
Query: 61 SFPSSNRQTQPIKALKEHVDTNFAS-TAEPWAEPPNSIEEESSELDYSVEALLLLQKSML 119
SFPSS R KALKE +DT AS T W + + EEESS LDYSVEAL+LLQKSML
Sbjct: 61 SFPSSYRNPHSNKALKELIDTASASSTVATWFKTLDDFEEESSVLDYSVEALILLQKSML 120
Query: 120 EKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQ 179
EKQWNLSFE +DS KK++KK+PVTCSGVSARQRRLN+K+K QN SK
Sbjct: 121 EKQWNLSFESINSSDSKIKKSNKKIPVTCSGVSARQRRLNNKRK---------NQNQSKF 171
Query: 180 LRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239
+ S ISP L+ NRLKGYVKGVVS+E+L H EVVRLS+ I+ GLSL+DHK LKERLGCEP
Sbjct: 172 M-SDISPGLLLNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSLEDHKSSLKERLGCEP 230
Query: 240 SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S EQLA SLRISR +LQS L++CSLAREKL MSNVRLVMSIAQ+ DNMGA+MADLVQ
Sbjct: 231 SDEQLADSLRISRADLQSQLIQCSLAREKLAMSNVRLVMSIAQKNDNMGAEMADLVQ 287
>gi|2565297|gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
Length = 502
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 190/307 (61%), Positives = 230/307 (74%), Gaps = 29/307 (9%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY PS
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYRPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLL 113
FPSSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LL
Sbjct: 61 FPSSNRHTQSAKALKESVDV--ASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILL 116
Query: 114 LQKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNK 169
LQKSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K
Sbjct: 117 LQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVK 176
Query: 170 SILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
++ + KQ+R GYVKGV+SE++L+HAEVVRLSKKIK+GL LDDHK
Sbjct: 177 AVSDVSSGKQVR-------------GYVKGVISEDVLSHAEVVRLSKKIKSGLRLDDHKS 223
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289
RLK+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA
Sbjct: 224 RLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGA 283
Query: 290 DMADLVQ 296
+M+DLVQ
Sbjct: 284 EMSDLVQ 290
>gi|15217767|ref|NP_176666.1| sigma factor A [Arabidopsis thaliana]
gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA polymerase sigma factor sigA; Short=Sigma factor
A; Short=Sigma-A; AltName: Full=RNA polymerase sigma
factor sig1; Short=Atsig1; Short=Sigma factor 1;
AltName: Full=RNA polymerase sigma factor sig2;
Short=Atsig2; Short=Sigma factor 2; AltName: Full=RNA
polymerase sigma factor sigB; Short=Sigma factor B;
Short=Sigma-B; Flags: Precursor
gi|5042421|gb|AAD38260.1|AC006193_16 RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis thaliana]
gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis thaliana]
gi|2558514|emb|CAA74640.1| plastid RNA polymerase sigma factor [Arabidopsis thaliana]
gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis thaliana]
gi|17064900|gb|AAL32604.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|222423019|dbj|BAH19492.1| AT1G64860 [Arabidopsis thaliana]
gi|332196177|gb|AEE34298.1| sigma factor A [Arabidopsis thaliana]
Length = 502
Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 189/307 (61%), Positives = 230/307 (74%), Gaps = 29/307 (9%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY+PS
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLL 113
FPSSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LL
Sbjct: 61 FPSSNRHTQSAKALKESVDV--ASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILL 116
Query: 114 LQKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNK 169
LQKSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K
Sbjct: 117 LQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVK 176
Query: 170 SILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
++ + KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK
Sbjct: 177 AVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKS 223
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289
RLK+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA
Sbjct: 224 RLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGA 283
Query: 290 DMADLVQ 296
+M+DLVQ
Sbjct: 284 EMSDLVQ 290
>gi|334183639|ref|NP_001185314.1| sigma factor A [Arabidopsis thaliana]
gi|332196178|gb|AEE34299.1| sigma factor A [Arabidopsis thaliana]
Length = 498
Score = 353 bits (905), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 189/307 (61%), Positives = 230/307 (74%), Gaps = 29/307 (9%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY+PS
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLL 113
FPSSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LL
Sbjct: 61 FPSSNRHTQSAKALKESVD--VASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILL 116
Query: 114 LQKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNK 169
LQKSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K
Sbjct: 117 LQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVK 176
Query: 170 SILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
++ + KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK
Sbjct: 177 AVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKS 223
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289
RLK+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA
Sbjct: 224 RLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGA 283
Query: 290 DMADLVQ 296
+M+DLVQ
Sbjct: 284 EMSDLVQ 290
>gi|11762220|gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]
Length = 502
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 188/307 (61%), Positives = 230/307 (74%), Gaps = 29/307 (9%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY+PS
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLL 113
FPSSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LL
Sbjct: 61 FPSSNRHTQSAKALKESVDV--ASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILL 116
Query: 114 LQKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNK 169
LQKSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K
Sbjct: 117 LQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVK 176
Query: 170 SILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
++ + KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK
Sbjct: 177 AVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKS 223
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289
RLK+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRY+N+GA
Sbjct: 224 RLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYNNLGA 283
Query: 290 DMADLVQ 296
+M+DLVQ
Sbjct: 284 EMSDLVQ 290
>gi|2398851|dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 502
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 188/307 (61%), Positives = 229/307 (74%), Gaps = 29/307 (9%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY+PS
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLL 113
FPSSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LL
Sbjct: 61 FPSSNRHTQSAKALKESVDV--ASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILL 116
Query: 114 LQKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNK 169
LQKSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SAR RR+ +KKK ++ K
Sbjct: 117 LQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARPRRIGAKKKTNMTHVK 176
Query: 170 SILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
++ + KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK
Sbjct: 177 AVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKS 223
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289
RLK+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA
Sbjct: 224 RLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGA 283
Query: 290 DMADLVQ 296
+M+DLVQ
Sbjct: 284 EMSDLVQ 290
>gi|2385344|emb|CAA74896.1| sigma factorB [Arabidopsis thaliana]
Length = 500
Score = 349 bits (896), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 187/305 (61%), Positives = 228/305 (74%), Gaps = 29/305 (9%)
Query: 4 TAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPSFP 63
TAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY+PSFP
Sbjct: 1 TAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPSFP 60
Query: 64 SSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLLLQ 115
SSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LLLQ
Sbjct: 61 SSNRHTQSAKALKESVDV--ASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILLLQ 116
Query: 116 KSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNKSI 171
KSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K++
Sbjct: 117 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKAV 176
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL 231
+ KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK RL
Sbjct: 177 SDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 223
Query: 232 KERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADM 291
K+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA+M
Sbjct: 224 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 283
Query: 292 ADLVQ 296
+DLVQ
Sbjct: 284 SDLVQ 288
>gi|6682869|dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
Length = 508
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 188/301 (62%), Positives = 234/301 (77%), Gaps = 10/301 (3%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
MM+TAAVIGLSAGKRLLSSSFYYSD++EK + +D V S KNV+ AKKSS+Y+P
Sbjct: 1 MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60
Query: 61 SFPSSNRQTQPIKALKEHVDTNFASTAEP-----WAEPPNSIEEESSELDYSVEALLLLQ 115
S SS R++Q K+LKEHVD TA+P W E ++ ES + D SVE LLLLQ
Sbjct: 61 SCVSS-RKSQSAKSLKEHVDI----TADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQ 115
Query: 116 KSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQN 175
KSMLEKQWNLS E+T+ +K KK+ +TCSG SAR+RR++S++++L ++ S +
Sbjct: 116 KSMLEKQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTS 175
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
+K LRS+I PEL+QNRLKGYVKGVVSEELLTHAEV++LSKKI+ GL L++ K RLKERL
Sbjct: 176 AAKPLRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERL 235
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
GCEPS +QLA SL++SR +LQS L+ECSLARE+L MSNVRLVMSIAQRYDN+GA+MADLV
Sbjct: 236 GCEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLV 295
Query: 296 Q 296
Q
Sbjct: 296 Q 296
>gi|297837779|ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
Length = 503
Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 192/306 (62%), Positives = 231/306 (75%), Gaps = 26/306 (8%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKK--SSNYN 59
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK SSNY+
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASSSNYS 60
Query: 60 PSFPSSNRQTQPIKALKEHVDTNFASTAEPWAE--PPNSIEEESSELD---YSVEALLLL 114
PSFPSSNR TQ KALKE VD AST +PW +EEE + D +SVEALLLL
Sbjct: 61 PSFPSSNRHTQSAKALKESVDV--ASTEKPWIHNGTDKELEEEGYDDDLIGHSVEALLLL 118
Query: 115 QKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNKS 170
QKSMLEK WNLSFE+ ++S SK+T KK+PV TCSG+SARQRR+ +KKK ++ K+
Sbjct: 119 QKSMLEKSWNLSFEKAASSESSSKRTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKA 178
Query: 171 ILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLR 230
+ + KQ+R GYVKGV+SE++L+HAEVVRLSKKIK+GL LDDHK R
Sbjct: 179 VSDVSSGKQVR-------------GYVKGVISEDVLSHAEVVRLSKKIKSGLRLDDHKSR 225
Query: 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 290
LK+RLGCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA+
Sbjct: 226 LKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAE 285
Query: 291 MADLVQ 296
M+DLVQ
Sbjct: 286 MSDLVQ 291
>gi|2706544|emb|CAA75859.1| Sig1 [Sinapis alba]
Length = 481
Score = 320 bits (819), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 182/301 (60%), Positives = 219/301 (72%), Gaps = 38/301 (12%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MAT AVIGL+AGKRLLSSSFYYSD++EKF +NDL S+ T++ + AKK+S+ + S
Sbjct: 1 MATTAVIGLNAGKRLLSSSFYYSDVTEKFLSVNDLCSSQYH---TRSGITAKKTSSSSSS 57
Query: 62 FPSSN-----RQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQK 116
S + RQTQ KALKE V AS+ +PW P + E E ++D+SVEALLLLQ+
Sbjct: 58 NYSPSFPSSSRQTQSAKALKESV----ASSVQPWLPPGSDQELEEDDIDHSVEALLLLQR 113
Query: 117 SMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNG 176
SMLEKQWNLSFE KT KKVPVTCSG+SARQRR+ +KKK + K++ + N
Sbjct: 114 SMLEKQWNLSFE----------KTRKKVPVTCSGISARQRRIGAKKK--TNVKAVSEVN- 160
Query: 177 SKQLRSMISPELIQNRL-KGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
QN L KGYVKGV+S+ +L+HAEVVRLSKKIK+GL LD+HK RL +RL
Sbjct: 161 ------------FQNNLVKGYVKGVISDHVLSHAEVVRLSKKIKSGLRLDEHKSRLTDRL 208
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
GCEPS EQLA SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDNMGA+M+DLV
Sbjct: 209 GCEPSDEQLAMSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLV 268
Query: 296 Q 296
Q
Sbjct: 269 Q 269
>gi|359489968|ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
vinifera]
Length = 497
Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 180/301 (59%), Positives = 220/301 (73%), Gaps = 21/301 (6%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFS-YINDLGSANSQVGSTKNVVAAKKSSNYN 59
MM TAAVIGLSAG RLL+SS +YSD++EK S Y+ND+G + KN+++AKK SNY
Sbjct: 1 MMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYT 60
Query: 60 PSFPSSNRQTQPIKALKEHVDTNFA-STAEPWAEPPNSIEEESSELDYSVEALLLLQKSM 118
PS SNR Q +KALKEHV++ A STA+P +S E + +Y VEA LLLQKSM
Sbjct: 61 PS---SNRSIQSMKALKEHVESASAPSTADP---DLSSSSSEVEDEEYLVEAFLLLQKSM 114
Query: 119 LEKQWNLSFERTVLT---DSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQN 175
LEKQWNLSFE D K K+ VTCSG SARQRR++ +K+++++
Sbjct: 115 LEKQWNLSFEEEEEEEEEDMGKKARQKRREVTCSGTSARQRRISGRKRVMNEK------- 167
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
++R+ + ++NRLKGYVKGVVSEELLTHA+VV LS KIK GL L+DHK RLKER+
Sbjct: 168 SKSRVRAALG---VENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERI 224
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
G EP+ EQ+AASLR+SR ELQS L+ECSLAREKL MSNVRLVMSIAQRYDNMGA+MADLV
Sbjct: 225 GSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 284
Query: 296 Q 296
Q
Sbjct: 285 Q 285
>gi|297737220|emb|CBI26421.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 178/298 (59%), Positives = 218/298 (73%), Gaps = 28/298 (9%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFS-YINDLGSANSQVGSTKNVVAAKKSSNYN 59
MM TAAVIGLSAG RLL+SS +YSD++EK S Y+ND+G + KN+++AKK SNY
Sbjct: 72 MMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYT 131
Query: 60 PSFPSSNRQTQPIKALKEHVDTNFA-STAEPWAEPPNSIEEESSELDYSVEALLLLQKSM 118
PS SNR Q +KALKEHV++ A STA+P +S E + +Y VEA LLLQKSM
Sbjct: 132 PS---SNRSIQSMKALKEHVESASAPSTADP---DLSSSSSEVEDEEYLVEAFLLLQKSM 185
Query: 119 LEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSK 178
LEKQWNLSF K K+ VTCSG SARQRR++ +K+++++
Sbjct: 186 LEKQWNLSF----------KARQKRREVTCSGTSARQRRISGRKRVMNEK-------SKS 228
Query: 179 QLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE 238
++R+ + ++NRLKGYVKGVVSEELLTHA+VV LS KIK GL L+DHK RLKER+G E
Sbjct: 229 RVRAALG---VENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSE 285
Query: 239 PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
P+ EQ+AASLR+SR ELQS L+ECSLAREKL MSNVRLVMSIAQRYDNMGA+MADLVQ
Sbjct: 286 PTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQ 343
>gi|6682871|dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
Length = 502
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 173/293 (59%), Positives = 217/293 (74%), Gaps = 7/293 (2%)
Query: 6 AVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPSFPSS 65
A+IGLSAG R+LSSSFYYS ++EKF ++D S KNV+ AK SSNY+PS+ S
Sbjct: 3 AIIGLSAGNRILSSSFYYSVLTEKFC-VSDHALPCHHFPSPKNVINAKNSSNYSPSYVS- 60
Query: 66 NRQTQPIKALKEHVD--TNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLEKQW 123
NR+ Q +KALKEHVD +N S EPW + ++ S + SVE LLLLQKSMLEKQW
Sbjct: 61 NRKKQSVKALKEHVDIASNRDSDTEPWVQMFKQLQNGSCSEEDSVEVLLLLQKSMLEKQW 120
Query: 124 NLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSM 183
NLS E+ + ++ KK K+ +TCSG SAR+RR++++K+ L S + SK+LRS+
Sbjct: 121 NLSAEKAMTNENNCKK---KMQITCSGTSARRRRMDTRKRDLLPKNSATSDSSSKRLRSV 177
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
I PEL+QNR KGY+ GVV +ELLTH EVV+LSKKIK GL L++ K RLKERLGCEPS +Q
Sbjct: 178 IGPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQ 237
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
LA SL+ISR +L+S L+ECSLAREKL MSNVRLVMSIAQRYD G +MADL+Q
Sbjct: 238 LAISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQ 290
>gi|346680879|gb|AEO45243.1| sigma factor [Nicotiana tabacum]
Length = 264
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 195/267 (73%), Gaps = 7/267 (2%)
Query: 6 AVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPSFPSS 65
A+IGLSAG R+LSSSFYYSD++EKF ++D S KNV+ AK SSNY+PS+ S
Sbjct: 3 AIIGLSAGNRILSSSFYYSDLTEKFC-VSDHALPCHHFPSPKNVINAKNSSNYSPSY-VS 60
Query: 66 NRQTQPIKALKEHVD--TNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLEKQW 123
NR+ Q +KALKEHVD +N S EPW + ++ S + SVE LLLLQKSMLEKQW
Sbjct: 61 NRKKQSVKALKEHVDIASNRDSDTEPWVQMFKQLQNGSCSEEDSVEVLLLLQKSMLEKQW 120
Query: 124 NLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSM 183
NLS E+ + ++ KK K+ TCSG SAR+RR++++K+ L S + +K+LRS+
Sbjct: 121 NLSAEKAMTNENNCKK---KMQTTCSGTSARRRRMDTRKRDLLPKNSATSDSSNKRLRSV 177
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
I PEL+QNR KGY+ GVV +ELLTH EVV+LSKKIK GL L++ K RLKERLGCEPS +Q
Sbjct: 178 IGPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQ 237
Query: 244 LAASLRISRPELQSILMECSLAREKLV 270
LA SL+ISR +L+SIL+ECSLAREKL
Sbjct: 238 LAISLKISRADLRSILIECSLAREKLA 264
>gi|414878913|tpg|DAA56044.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
gi|414878914|tpg|DAA56045.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
gi|414878915|tpg|DAA56046.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
Length = 287
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 184/302 (60%), Gaps = 20/302 (6%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYIN-DLGSANSQVGSTKNVVAAKKSSNYN 59
M AT AVIGLSAG RLL++SF ++++ +Y + +A ++ + +A SS N
Sbjct: 1 MTATPAVIGLSAGNRLLATSFGSAELASPDAYPSRQFAAAAPKLTVVAHRASASASSPAN 60
Query: 60 PSFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESS-ELDYSVEALLLLQKSM 118
R I+AL+ H A + E +S E + S+EA++LLQ+SM
Sbjct: 61 IGGAGHAR-AHAIRALRNHSAPALAPPPPA----DPAPELDSKFEFESSLEAIVLLQRSM 115
Query: 119 LEKQWNLSFERTVL-TDSPSKKTHKKVPVTCSGVSARQRRLNSKKK-ILSQNKSILQQNG 176
LEKQW L FE + T+ + V V SGVSARQRR++ +++ + KS+
Sbjct: 116 LEKQWELPFEDDISSTEDEDEDERSTVVVARSGVSARQRRMSGRRRGAVVGRKSV----- 170
Query: 177 SKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG 236
+SPEL+Q+R + Y++G VS++LLTH +VV+LS+KIK G+ L + +LKE+LG
Sbjct: 171 ------TVSPELMQSRNRIYLRGTVSKDLLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLG 224
Query: 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EPS +QLA SLRI PEL++ + E LARE L MSN RLV+SIAQ+YDN+G ++ DL+Q
Sbjct: 225 NEPSYKQLAQSLRIPAPELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQ 284
Query: 297 VI 298
V+
Sbjct: 285 VM 286
>gi|242078297|ref|XP_002443917.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
gi|241940267|gb|EES13412.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
Length = 500
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 127/306 (41%), Positives = 186/306 (60%), Gaps = 28/306 (9%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
M AT A+IGLSAGKRLL++SF +D++ ++ S + K V A ++S +
Sbjct: 1 MTATPAMIGLSAGKRLLATSFGNTDLAPPDAH----PSLQFAPAAPKLTVVAHRASASSS 56
Query: 61 SF---PSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIE-------EESSELDYSVEA 110
S P+ + + I+AL+ H A PP + + E EL+ S+EA
Sbjct: 57 SSSSSPAGHARAHAIRALRNHSAPALAPPLPLPLPPPPAADPAPELDSEFEFELESSLEA 116
Query: 111 LLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKS 170
++LLQ+SMLEKQW L F + + T V V SGVSARQRR++ +++ KS
Sbjct: 117 IVLLQRSMLEKQWQLPF--EDEDEDDERLTKAAVVVARSGVSARQRRMSGRRRG-PGRKS 173
Query: 171 ILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLR 230
+ +SPEL+Q+R + Y++G VS++LLTH +V++LS+KIK G+ L + +
Sbjct: 174 V-----------TVSPELMQSRNRIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSK 222
Query: 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 290
LKE+LG EPS +QLA SL IS PEL++ + E LARE L MSN+RLV+SIAQ+YDN+G +
Sbjct: 223 LKEKLGNEPSYKQLAQSLHISPPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVE 282
Query: 291 MADLVQ 296
+ADL+Q
Sbjct: 283 LADLIQ 288
>gi|2624403|emb|CAA74653.1| plastid RNA polymerase sigma factor [Sorghum bicolor]
Length = 500
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 127/306 (41%), Positives = 186/306 (60%), Gaps = 28/306 (9%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
M AT A+IGLSAGKRLL++SF +D++ ++ S + K V A ++S +
Sbjct: 1 MTATPAMIGLSAGKRLLATSFGNTDLAPPDAH----PSLQFAPAAPKLTVVAHRASASSS 56
Query: 61 SF---PSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIE-------EESSELDYSVEA 110
S P+ + + I+AL+ H A PP + + E EL+ S+EA
Sbjct: 57 SSSSSPAGHARAHAIRALRNHSAPALAPPLPLPLPPPPAADPAPELDSEFEFELESSLEA 116
Query: 111 LLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKS 170
++LLQ+SMLEKQW L F + + T V V SGVSARQRR++ +++ KS
Sbjct: 117 IVLLQRSMLEKQWQLPF--EDEDEDDERLTKAAVVVARSGVSARQRRMSGRRRG-PGRKS 173
Query: 171 ILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLR 230
+ +SPEL+Q+R + Y++G VS++LLTH +V++LS+KIK G+ L + +
Sbjct: 174 V-----------TVSPELMQSRNRIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSK 222
Query: 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 290
LKE+LG EPS +QLA SL IS PEL++ + E LARE L MSN+RLV+SIAQ+YDN+G +
Sbjct: 223 LKEKLGNEPSYKQLAQSLHISPPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVE 282
Query: 291 MADLVQ 296
+ADL+Q
Sbjct: 283 LADLIQ 288
>gi|297608012|ref|NP_001061065.2| Os08g0163400 [Oryza sativa Japonica Group]
gi|255678168|dbj|BAF22979.2| Os08g0163400 [Oryza sativa Japonica Group]
Length = 520
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 183/317 (57%), Gaps = 30/317 (9%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDI-SEKFSYINDLGSANSQVGSTKNVVAAKKSSNYN 59
M AT AVIGLSAG RLLS+SF +D+ +K S G G + ++ +
Sbjct: 1 MTATPAVIGLSAGNRLLSASFGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAPPAPAT 60
Query: 60 PSFP---------SSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEE-----ESSELD 105
P S + + Q ++AL+ H A P PP + + +L+
Sbjct: 61 PKLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAHAHDLE 120
Query: 106 YSVEALLLLQKSMLEKQWNLSFER------TVLTDSPSKKTHKKVPVTCSGVSARQRRLN 159
S+EA++LLQ+SMLEKQW L F+ L + + V V S VSARQRR++
Sbjct: 121 SSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQRRMS 180
Query: 160 SKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIK 219
+++ ++N G+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK
Sbjct: 181 GRRRGRTKN-------GAAHF--AVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIK 231
Query: 220 TGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279
G+ L + +LKE+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RLV+S
Sbjct: 232 DGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVIS 291
Query: 280 IAQRYDNMGADMADLVQ 296
IAQ+YDN+G ++ADL+Q
Sbjct: 292 IAQKYDNLGVELADLIQ 308
>gi|194699556|gb|ACF83862.1| unknown [Zea mays]
gi|223944677|gb|ACN26422.1| unknown [Zea mays]
gi|413917282|gb|AFW57214.1| RNA polymerase sigma factor 1 isoform 1 [Zea mays]
gi|413917283|gb|AFW57215.1| RNA polymerase sigma factor 1 isoform 2 [Zea mays]
gi|413917284|gb|AFW57216.1| RNA polymerase sigma factor 1 isoform 3 [Zea mays]
Length = 496
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 125/300 (41%), Positives = 182/300 (60%), Gaps = 20/300 (6%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYIN-DLGSANSQVGSTKNVVAAKKSSNYN 59
M AT AVIGLSAG RLL++SF ++++ +Y + +A ++ + +A SS N
Sbjct: 1 MTATPAVIGLSAGNRLLATSFGSAELASPDAYPSRQFAAAAPKLTVVAHRASASASSPAN 60
Query: 60 PSFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESS-ELDYSVEALLLLQKSM 118
R I+AL+ H A + E +S E + S+EA++LLQ+SM
Sbjct: 61 IGGAGHAR-AHAIRALRNHSAPALAPPPPA----DPAPELDSKFEFESSLEAIVLLQRSM 115
Query: 119 LEKQWNLSFERTVL-TDSPSKKTHKKVPVTCSGVSARQRRLNSKKK-ILSQNKSILQQNG 176
LEKQW L FE + T+ + V V SGVSARQRR++ +++ + KS+
Sbjct: 116 LEKQWELPFEDDISSTEDEDEDERSTVVVARSGVSARQRRMSGRRRGAVVGRKSV----- 170
Query: 177 SKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG 236
+SPEL+Q+R + Y++G VS++LLTH +VV+LS+KIK G+ L + +LKE+LG
Sbjct: 171 ------TVSPELMQSRNRIYLRGTVSKDLLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLG 224
Query: 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EPS +QLA SLRI PEL++ + E LARE L MSN RLV+SIAQ+YDN+G ++ DL+Q
Sbjct: 225 NEPSYKQLAQSLRIPAPELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQ 284
>gi|2780746|dbj|BAA24364.1| plastid RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 519
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 185/320 (57%), Gaps = 37/320 (11%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDI-SEKFSYINDLGSANSQVGSTKNVVAAKKSSNYN 59
M AT AVIGLSAG RLLS+SF +D+ +K S G G + ++ +
Sbjct: 1 MTATPAVIGLSAGNRLLSASFGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAAA---- 56
Query: 60 PSFP------------SSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEE-----ESS 102
P+ P S + + Q ++AL+ H A P PP + +
Sbjct: 57 PATPKLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAHAH 116
Query: 103 ELDYSVEALLLLQKSMLEKQWNLSFER------TVLTDSPSKKTHKKVPVTCSGVSARQR 156
+L+ S+EA++LLQ+SMLEKQW L F+ L + + V V S VSARQR
Sbjct: 117 DLESSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQR 176
Query: 157 RLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSK 216
R++ +++ ++N G+ +SPELIQ+R + Y++G VS+ELLTH +VV LS
Sbjct: 177 RMSGRRRGRTKN-------GAAHF--AVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSH 227
Query: 217 KIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRL 276
KIK G+ L + +LKE+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RL
Sbjct: 228 KIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRL 287
Query: 277 VMSIAQRYDNMGADMADLVQ 296
V+SIAQ+YDN+G ++ADL+Q
Sbjct: 288 VISIAQKYDNLGVELADLIQ 307
>gi|413921194|gb|AFW61126.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 504
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/198 (49%), Positives = 139/198 (70%), Gaps = 15/198 (7%)
Query: 102 SELDYSVEALLLLQKSMLEKQWNLSFERTVLT--DSPSKKTHKKVPVTC-SGVSARQRRL 158
SE + S+EA++LLQ+SMLEKQW L FE +++ D + K V SGVSARQRR+
Sbjct: 107 SEFESSLEAIVLLQRSMLEKQWELPFEDDIISTDDEQDDRVSKATVVAARSGVSARQRRM 166
Query: 159 NSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKI 218
+ +++ + KS+ ISPEL+Q+R + Y++G VS++LLTH +V++LS+KI
Sbjct: 167 SGRRRG-AGRKSV-----------AISPELMQSRNRIYLRGTVSKDLLTHKQVIQLSRKI 214
Query: 219 KTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVM 278
K G+ L + +LKE+LG EPS +QLA SLRIS PEL++ + E LARE L MSN+RLV+
Sbjct: 215 KDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAPELRARMRESFLAREMLTMSNIRLVI 274
Query: 279 SIAQRYDNMGADMADLVQ 296
SIA +YDN+G D+ADL+Q
Sbjct: 275 SIAHKYDNLGVDLADLIQ 292
>gi|326523529|dbj|BAJ92935.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 170/313 (54%), Gaps = 36/313 (11%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGS--ANSQVGSTKNVVAAKKSSNY 58
M AT ++IGLSAG RLLS+SF NDL S NS + S S +
Sbjct: 1 MTATPSLIGLSAGNRLLSTSF---------GPPNDLLSDKVNSHMTSAAGDAHGSSSLQF 51
Query: 59 NPSFPSSNRQTQPIKALK--EHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQK 116
P P++++ T LK H A P ++ ++S++A++LLQ+
Sbjct: 52 AP--PAASKLTVAAHRLKLSPHGRAQVMRALRQSALAPQPPPLLLAD-EFSLDAIILLQR 108
Query: 117 SMLEKQWNLSFERTVLTDSP-------------SKKTHKKVPVTCSGVSARQRRLNSKKK 163
SMLEKQW L FE K V V SGVSA +++
Sbjct: 109 SMLEKQWKLPFEDDDGGGDGHHGDDIDSAEDDDGKSRSSSVVVARSGVSA-------RQR 161
Query: 164 ILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLS 223
+S + + GS + ISPEL+Q+R + Y++G VS+ELLTH +VV LSKKIK G+
Sbjct: 162 RMSGRRRGRSKKGSGAVHLSISPELLQSRNRIYLRGTVSKELLTHKQVVHLSKKIKDGIW 221
Query: 224 LDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQR 283
L + +L E LG EPS +Q+A SLRIS PEL+S + E LARE L MSN+RLV+SIAQ+
Sbjct: 222 LQQQRSKLTEILGNEPSYKQMAQSLRISTPELRSRMRESFLAREVLTMSNIRLVISIAQK 281
Query: 284 YDNMGADMADLVQ 296
YD +G +++DL+Q
Sbjct: 282 YDKLGVELSDLIQ 294
>gi|326512474|dbj|BAJ99592.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 170/313 (54%), Gaps = 36/313 (11%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGS--ANSQVGSTKNVVAAKKSSNY 58
M AT ++IGLSAG RLLS+SF NDL S NS + S S +
Sbjct: 1 MTATPSLIGLSAGNRLLSTSF---------GPPNDLLSDKVNSHMTSAAGDAHGSSSLQF 51
Query: 59 NPSFPSSNRQTQPIKALK--EHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQK 116
P P++++ T LK H A P ++ ++S++A++LLQ+
Sbjct: 52 AP--PAASKLTVAAHRLKLSPHGRAQVMRALRQSALAPQPPPLLLAD-EFSLDAIILLQR 108
Query: 117 SMLEKQWNLSFERTVLTDSP-------------SKKTHKKVPVTCSGVSARQRRLNSKKK 163
SMLEKQW L FE K V V SGVSA +++
Sbjct: 109 SMLEKQWKLPFEDDDGGGDGHHGDDIDSAEDDDGKSRSSSVVVARSGVSA-------RQR 161
Query: 164 ILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLS 223
+S + + GS + ISPEL+Q+R + Y++G VS+ELLTH +VV LSKKIK G+
Sbjct: 162 RMSGRRRGRSKKGSGAVHLSISPELLQSRNRIYLRGTVSKELLTHKQVVHLSKKIKDGIW 221
Query: 224 LDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQR 283
L + +L E LG EPS +Q+A SLRIS PEL+S + E LARE L MSN+RLV+SIAQ+
Sbjct: 222 LQQQRSKLTEILGNEPSYKQMAQSLRISTPELRSRMRESFLAREVLTMSNIRLVISIAQK 281
Query: 284 YDNMGADMADLVQ 296
YD +G +++DL+Q
Sbjct: 282 YDKLGVELSDLIQ 294
>gi|3893860|gb|AAC78467.1| RNA polymerase sigma factor 1 [Zea mays]
Length = 398
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/195 (48%), Positives = 136/195 (69%), Gaps = 14/195 (7%)
Query: 103 ELDYSVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKK 162
E + S+EA++LLQ+SMLEKQW L FE + T+ +++ V V SGVSARQRR++ ++
Sbjct: 5 EFESSLEAIVLLQRSMLEKQWELPFEDDISTEDEDERS--TVVVARSGVSARQRRMSGRR 62
Query: 163 K-ILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTG 221
+ KS+ +SPEL+Q+R + Y++G VS++LLTH +VV+LS+KIK G
Sbjct: 63 RGAFVGRKSV-----------TVSPELMQSRNRIYLRGTVSKDLLTHKQVVQLSRKIKDG 111
Query: 222 LSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281
+ L + +LKE+LG EPS +QLA SLRI PEL++ + E LARE L MSN RLV+SIA
Sbjct: 112 IWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAPELRARMRESFLAREMLAMSNTRLVISIA 171
Query: 282 QRYDNMGADMADLVQ 296
Q+YDN+G ++ DL+Q
Sbjct: 172 QKYDNLGVELPDLIQ 186
>gi|4218586|emb|CAA10725.1| chloroplast sigma factor [Triticum aestivum]
Length = 461
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 130/208 (62%), Gaps = 23/208 (11%)
Query: 105 DYSVEALLLLQKSMLEKQWNLSFERTVLT----------------DSPSKKTHKKVPVTC 148
++S++A++LLQ+SMLEKQW L FE D K V V
Sbjct: 49 EFSLDAIILLQRSMLEKQWQLPFEEEDDDDGGGDGHHVEAIGSAEDDDGKGRSSSVVVAR 108
Query: 149 SGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTH 208
SGVSA +++ +S + + GS + ISPEL+Q+R + Y++G VS+ELLT
Sbjct: 109 SGVSA-------RQRRMSGRRRGRSKKGSGAVHLSISPELLQSRNRIYLRGTVSKELLTQ 161
Query: 209 AEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREK 268
+VV LSKKIK G+ L + +LKE+LG EPS +Q+A SLRIS PEL+S + E LARE
Sbjct: 162 KQVVHLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTPELRSRMRESFLAREV 221
Query: 269 LVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L MSN+RLV+SIAQ+YD +G +++DL+Q
Sbjct: 222 LTMSNIRLVISIAQKYDKLGVELSDLIQ 249
>gi|357144851|ref|XP_003573435.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 531
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 181/325 (55%), Gaps = 35/325 (10%)
Query: 1 MMATAAVIGLSAGKRLLSSSF---------------YYSDISEKFSYINDLGSANSQVGS 45
M AT AVIGLSAG RLL +SF Y + S + S++ Q G+
Sbjct: 1 MTATPAVIGLSAGNRLLGTSFGPPSGDLLCDKVSSHYLAGGDGSSSSSSSASSSSLQFGA 60
Query: 46 ---TKNVVAAKKSSNYNPSFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESS 102
+K VAA + S + + Q ++AL++ + A P P ++
Sbjct: 61 PAASKLTVAAHRLK------LSPHGRAQVMRALRQSAPAAVLALAPPPHPSPPPPAPAAA 114
Query: 103 ELDYSVEA--LLLLQKSMLEKQWNLSFERT--------VLTDSPSKKTHKKVPVTCSGVS 152
E + S+EA ++LLQ+SMLEKQW+L FE + V V SGVS
Sbjct: 115 EGELSLEATAIVLLQRSMLEKQWHLPFEDEDEDEEDDDAIGSGADAIGSAAVVVARSGVS 174
Query: 153 ARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELI-QNRLKGYVKGVVSEELLTHAEV 211
AR+RR++ +++ S + G +SP L+ Q+R + Y++G VS+ELLTH +V
Sbjct: 175 ARERRMSGRRRGRSSSSKAKSGGGGGAQLGGVSPSLLMQSRNRIYLRGSVSKELLTHKQV 234
Query: 212 VRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVM 271
V+LSKKIK G+ L + +LKE+LG EPS +Q+A SLRIS PEL+S + + LARE L M
Sbjct: 235 VQLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTPELRSRMRDSFLAREVLTM 294
Query: 272 SNVRLVMSIAQRYDNMGADMADLVQ 296
SN+RLV+SIAQ+YD +G ++ DL+Q
Sbjct: 295 SNLRLVISIAQKYDKLGVELPDLIQ 319
>gi|125602291|gb|EAZ41616.1| hypothetical protein OsJ_26150 [Oryza sativa Japonica Group]
Length = 420
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 125/188 (66%), Gaps = 15/188 (7%)
Query: 115 QKSMLEKQWNLSFER------TVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQN 168
++SMLEKQW L F+ L + + V V S VSARQRR++ +++ ++N
Sbjct: 30 KRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQRRMSGRRRGRTKN 89
Query: 169 KSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHK 228
G+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK G+ L +
Sbjct: 90 -------GAAHF--AVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQR 140
Query: 229 LRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG 288
+LKE+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RLV+SIAQ+YDN+G
Sbjct: 141 SKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLG 200
Query: 289 ADMADLVQ 296
++ADL+Q
Sbjct: 201 VELADLIQ 208
>gi|37806470|dbj|BAC99905.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 388
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 122/185 (65%), Gaps = 15/185 (8%)
Query: 118 MLEKQWNLSFER------TVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSI 171
MLEKQW L F+ L + + V V S VSARQRR++ +++ ++N
Sbjct: 1 MLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQRRMSGRRRGRTKN--- 57
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL 231
G+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK G+ L + +L
Sbjct: 58 ----GAAHF--AVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKL 111
Query: 232 KERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADM 291
KE+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RLV+SIAQ+YDN+G ++
Sbjct: 112 KEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVEL 171
Query: 292 ADLVQ 296
ADL+Q
Sbjct: 172 ADLIQ 176
>gi|125560253|gb|EAZ05701.1| hypothetical protein OsI_27933 [Oryza sativa Indica Group]
Length = 372
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 94/123 (76%), Gaps = 2/123 (1%)
Query: 174 QNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE 233
+NG+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK G+ L + +LKE
Sbjct: 40 KNGAAHF--AVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKE 97
Query: 234 RLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RLV+SIAQ+YDN+G ++AD
Sbjct: 98 KLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELAD 157
Query: 294 LVQ 296
L+Q
Sbjct: 158 LIQ 160
>gi|37806471|dbj|BAC99906.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 342
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 94/123 (76%), Gaps = 2/123 (1%)
Query: 174 QNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE 233
+NG+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK G+ L + +LKE
Sbjct: 10 KNGAAHF--AVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKE 67
Query: 234 RLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
+LG EPS +QLA SL+IS PEL+S + E LARE L MSN+RLV+SIAQ+YDN+G ++AD
Sbjct: 68 KLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELAD 127
Query: 294 LVQ 296
L+Q
Sbjct: 128 LIQ 130
>gi|3769432|gb|AAC78468.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 349
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 91/113 (80%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
ISPEL+Q+R + Y++G VS++LLTH +V++LS+KIK G+ L + +LKE+LG EPS +Q
Sbjct: 25 ISPELMQSRNRIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQ 84
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
LA SLRIS PEL++ + E LARE L MSN+RLV+SIA +YDN+G D+ADL+Q
Sbjct: 85 LAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQ 137
>gi|168036108|ref|XP_001770550.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
gi|14669828|dbj|BAB62006.1| PpSIG1 [Physcomitrella patens]
gi|14669830|dbj|BAB62007.1| PpSIG1 [Physcomitrella patens]
gi|162678258|gb|EDQ64719.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
Length = 677
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 103/189 (54%), Gaps = 15/189 (7%)
Query: 113 LLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSIL 172
L++ + E ++ E V + SPS +T + + +RQRR+ K S + +
Sbjct: 282 LVEDACPESTSTMTTELVVKSGSPSARTRR--------LESRQRRVAIAGKPTSPDALTI 333
Query: 173 Q-----QNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDH 227
Q G + R + + +Q+ L Y++ + LLT E V LSKK++ GL+L +
Sbjct: 334 HPLKKYQKGERVRR--VKFDGVQDYLTTYLREITKINLLTKQEEVFLSKKLRIGLNLLEE 391
Query: 228 KLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNM 287
+ +L LG PS E+ A + +S +L L E AR+K+VM+N+RLV+S+A++Y +
Sbjct: 392 RKKLAAELGYVPSNEEWAPHMNLSVGDLVRKLGEAEWARDKMVMANLRLVVSVAKQYHSF 451
Query: 288 GADMADLVQ 296
G +MADL+Q
Sbjct: 452 GLEMADLIQ 460
>gi|407327701|dbj|BAM45408.1| sigma factor 1 [Marchantia polymorpha]
Length = 574
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 36/230 (15%)
Query: 103 ELDYSVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTH--------------------- 141
EL + +A L++S LE QW+L V P+ +
Sbjct: 129 ELSPAGDAATSLERSRLESQWSLFLSDAVDRPLPNLEGMGEDFGEEVVDVQEEDSANGLS 188
Query: 142 ---KKVPVTCSG-VSARQRRLNSKKKILS--QNKSILQQNGSKQLRSMIS---------P 186
K V V SG SAR RRL ++++ LS + S ++ LR S P
Sbjct: 189 DGLKAVKVISSGRPSARLRRLEARQRRLSGVEKPSPMEAFMIHPLRKTESSSKADKAKKP 248
Query: 187 ELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAA 246
E +Q+ L Y++ + + LT E + LSKKI+TG L + + + + LG + +Q A
Sbjct: 249 EGVQDYLSTYLRDITKIDRLTAEEEIMLSKKIRTGYILKEERKKFERALGHPITKDQWAG 308
Query: 247 SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ +L + L E LAR+++VM+N+RLV+S+ ++Y+ G ++ DL+Q
Sbjct: 309 HMHMAVGDLDAQLHEAELARDRMVMANLRLVVSVVKQYNCEGLEVPDLIQ 358
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 63/92 (68%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLT AE V L+++++ ++LD+ + RL++ L P+ +LAA+L IS +LQ + +C
Sbjct: 59 LLTAAEEVELARRVQELVALDELEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQ 150
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 62/92 (67%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLT E V L+++++ ++LD+ + RL++ L P+ +LAA+L IS +LQ + +C
Sbjct: 59 LLTATEEVELARRVQELVALDEVEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQ 150
>gi|443329714|ref|YP_007378785.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682340|gb|AFZ61104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 328
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 68/104 (65%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ +V LLTH E + SK+++ ++L + K LK++L EPS ++LA +++S
Sbjct: 20 VRNYLQDIVRVPLLTHEEEISSSKQVQQMITLQNKKETLKKQLNHEPSQKELAQYVQLSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E++ I + A++K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 80 MEVKEIFQKGVQAKQKMIAANLRLVVSIAKKYQGRNVEFMDLIQ 123
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 66/104 (63%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT E L I+ L L+ K +L+ + GCEP++ + A ++ IS
Sbjct: 234 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 293
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
P+L+S + +REKL+ +N+RLV+ IA++Y N G + DL+Q
Sbjct: 294 PDLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 337
>gi|17158744|ref|NP_478255.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17134693|dbj|BAB77251.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 323
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 69/104 (66%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ +V LLTH E + SK+++ + L K LK++L EPS ++LA +++S
Sbjct: 15 VRNYLQDIVRVPLLTHEEEIVYSKQVQQMMVLQKKKETLKKQLNHEPSQKELAKYVQLSE 74
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E++ I + + A++K++++N+RLV++IA++Y ++ DL+Q
Sbjct: 75 IEVKDIFQQGTQAKQKMMVANLRLVVAIAKKYQRRNLELMDLIQ 118
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT E L I+ L L+ K +L+ + GCEP++ + A ++ IS
Sbjct: 235 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 294
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
P L+S + +REKL+ +N+RLV+ IA++Y N G + DL+Q
Sbjct: 295 PVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 338
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT E L I+ L L+ K +L+ + GCEP++ + A ++ IS
Sbjct: 175 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 234
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
P L+S + +REKL+ +N+RLV+ IA++Y N G + DL+Q
Sbjct: 235 PVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 278
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ + S LL+ E V LS+ I+ L L+ + LKER G +P+ Q AA+ R+ +
Sbjct: 254 LRFFRGASTSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQ 313
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L L ++K++ SN+RLV+SIA+ Y G ++ DLVQ
Sbjct: 314 ITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 357
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + +LLTH E + +K+++ ++L K L+E+LG EP+ Q A ++S
Sbjct: 11 VRSYLKEIGRVDLLTHEEEIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAKLSV 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL++ L A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 KELKTTLEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT E L I+ + L+ K +L+ + GCEP++ + A ++ +S
Sbjct: 235 LQLFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEAMGLSS 294
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
P L+S + +REKL+ +N+RLV+ IA++Y N G + DL+Q
Sbjct: 295 PVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 338
>gi|86607249|ref|YP_476012.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
gi|86555791|gb|ABD00749.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
Length = 361
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 60/91 (65%)
Query: 206 LTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLA 265
+ HAE + LS+KI+ L +D + +++ G +PS E+LAA+L+I L+S + + A
Sbjct: 65 IDHAEEIELSRKIQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQA 124
Query: 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ KL+ +N+RLV+S+A++Y N G DL+Q
Sbjct: 125 QRKLINANLRLVVSVAKKYLNRGVPFLDLIQ 155
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E + +K+++ ++L+ + + E G EP+ Q A + +ISR
Sbjct: 11 VRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKISR 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
ELQSI+ A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 KELQSIIEIGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|973980|gb|AAB05357.1| RNA polymerase sigma factor, partial [Cyanidium caldarium]
Length = 609
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ ++K + S LLT ++VV L+++I+ + +++L+ G EP + A +L +S
Sbjct: 261 MGAFLKEIGSVPLLTESQVVSLAREIRKLALWNATRIQLRHEYGKEPDRTEWAKALNMSA 320
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL L+ ARE LV +N+RLV+S+A+++ N G M DL+Q
Sbjct: 321 EELTRNLLRAQRARESLVAANLRLVVSVAKQFTNRGLSMQDLIQ 364
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 91/169 (53%), Gaps = 7/169 (4%)
Query: 135 SPSKKTH-KKVPVTCSGVSARQ-----RRLNSKKKILSQNKSILQQNGSKQLRSMISPEL 188
+P++K +K+ V+ + S RQ RR+ +K S +S ++ S + + + S E+
Sbjct: 195 TPAEKQEVEKLSVSSAVRSTRQTERKARRVKGLEKTASGMQSSVKTGSSSRKKRVASQEI 254
Query: 189 IQNRLKGYVKGVVSE-ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
N Y++ S +LLT E +LS+ I+ L L+ + L ER G +P+ Q A++
Sbjct: 255 DHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASA 314
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + L+ + + +++++ SN+RLV+SIA+ Y G D DLVQ
Sbjct: 315 AGVDKKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQ 363
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + V K+++ L+D K L RLG PS E+ A + ++S
Sbjct: 11 VRTYLREIGRVPLLTHEQEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQASQLSS 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ + E A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 AELKQAIAEGEYAKRKMVEANLRLVVSVAKKYTKRNVDLLDLIQ 114
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 66/104 (63%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ ++L+ K L E LG EP++ Q A + ++++
Sbjct: 11 VRAYLREIGRVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKMTQ 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+S + A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 KELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 14/170 (8%)
Query: 140 THKKVPVT----CSGVSARQRRLNSKK--------KILSQNKSILQQNGSKQLRSMISPE 187
THK++ + G++ R RR +K K S S+ + SK+ R +
Sbjct: 194 THKELELLQKQLSEGIAVRSRRQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEV 253
Query: 188 LIQNRLKGYVKGVVS-EELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAA 246
+ L+ Y++G S LLT +E + LS I+ L L+ + L ER G +P+ Q AA
Sbjct: 254 DYSDPLR-YLRGTTSTSRLLTASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAA 312
Query: 247 SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + L+ + ++ ++K++ SN+RLV+SIA+ Y G ++ DLVQ
Sbjct: 313 AAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 362
>gi|330040254|ref|XP_003239821.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
Length = 414
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + +LL E ++L+++I L + K+ LKE+LG EP+ + +A+ +IS
Sbjct: 86 VRWYLQLIGKVKLLKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACKISD 145
Query: 253 PE-LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +++L A+E+++ +N+RLV+SIA+RY N G + DLVQ
Sbjct: 146 VQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQ 190
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 67/107 (62%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
Q+ ++ Y++ + +LLT +E + L++ I+ L ++ K L+E++G EP++ + A ++
Sbjct: 302 QDPVRAYLRDIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVG 361
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R L+S + ++++V SN+RLV+SIA+RY G + DL+Q
Sbjct: 362 TERHSLESRIKSGQACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQ 408
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ +L + + L +LG +P++E+ AAS ++
Sbjct: 25 VRTYLREIGRVPLLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQVEP 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + E +A+ ++V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 85 VELNTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQ 128
>gi|409991559|ref|ZP_11274809.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
gi|409937568|gb|EKN78982.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
Length = 319
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ L + + L ++LG EP+ Q A + +S
Sbjct: 12 VRAYLREIGRVPLLTHEQEILYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSV 71
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ IL + LA+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 72 AQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL E V L++++K + + L E+LG P+ +QLA +L
Sbjct: 63 EDTVGAFFKEMARYPLLQPDEEVELAQQVKLAADFEHKRQELAEKLGSPPTKQQLAEALE 122
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ EL L + +A+ +++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 123 MGVKELDRKLYQGRVAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 169
>gi|427717250|ref|YP_007065244.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427349686|gb|AFY32410.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 318
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 64/104 (61%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ +L + + L +LG +P++E+ A + ++
Sbjct: 11 VRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEAREYLAAQLGRQPTLEEWATTAKLES 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL I+ + +A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 TELNDIIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|209524631|ref|ZP_03273179.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064274|ref|ZP_17053064.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209495089|gb|EDZ95396.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406713517|gb|EKD08685.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 331
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ L + + L ++LG EP+ Q A + +S
Sbjct: 24 VRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSV 83
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ IL + LA+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 84 AQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 127
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ + L+ ++ + G EP+ Q A + RISR
Sbjct: 11 VRSYLREIGRVPLLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAARISR 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL S + A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 RELHSAIASGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|376005594|ref|ZP_09783057.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375326028|emb|CCE18810.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 331
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ L + + L ++LG EP+ Q A + +S
Sbjct: 24 VRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSV 83
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ IL + LA+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 84 AQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 127
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 67/114 (58%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
M + E ++ ++ Y++ + LLTH + + K+++ + + L +RLG EP +
Sbjct: 1 MKTAETSKDLVRAYLREIGRVPLLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLT 60
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ A + ++S ELQ ++ LA+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 61 EWATAAKLSEAELQGVVNRGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 68/114 (59%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
M + E+ ++ ++ Y++ + LLTH E V K+++ + L + L E+L +P+
Sbjct: 1 MRTKEIAKDSVRSYLREIGRVPLLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDA 60
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +A+ ++S ELQ L E A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 61 EWSAAAKLSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E + +K+++ + ++ K L+++LG EP+ Q A + I+
Sbjct: 11 VRSYLKEIGRVPLLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAEITV 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL++I+ A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EELRNIIQAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 59/91 (64%)
Query: 206 LTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLA 265
+ HAE + LS+KI+ L +D + +++ G +PS E LA +L+IS L+S + + A
Sbjct: 65 IDHAEEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQISVSTLRSRIRQGEQA 124
Query: 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ KL+ +N+RLV+S+A++Y N G DL+Q
Sbjct: 125 QRKLINANLRLVVSVAKKYLNRGVPFLDLIQ 155
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 64/104 (61%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E +R K+++ +L + + L +LG EPS+E+ A + I+
Sbjct: 25 VRTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANINS 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L + + +A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 85 ADLLGAIADGEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 196 YVKGVV-SEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
Y++G S LLT +E LS I+ L L+ LK R G PS Q AA+ I +
Sbjct: 267 YLRGATNSSRLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRT 326
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + ++K++ SNVRLV+SIA+ Y G ++ DLVQ
Sbjct: 327 LRRRLNHGTFCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQ 368
>gi|452822634|gb|EME29651.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 601
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ ++K + S LL +V+ L+++I+ + +++L+++ G EP + A SL +S
Sbjct: 253 MGAFLKEIGSVPLLNENQVISLAREIRKLALWNATRIQLRQQYGREPDRVEWAKSLNMSS 312
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL L+ ARE LV +N+RLV+S+A+++ N G M DL+Q
Sbjct: 313 EELTRNLLRAQRARESLVAANLRLVVSVAKQFTNRGLSMQDLIQ 356
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L D K L + LG EP++E+ A + +S
Sbjct: 11 VRTYLREIGRVPLLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAELSP 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL S + +A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 SELNSHINAGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLT E + LS+ I+ L L+ + L ER G EP+ Q AA+ +++ L+ L +L
Sbjct: 282 LLTATEELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTL 341
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++K++ SN+RLV+SIA+ Y G ++ DLVQ
Sbjct: 342 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 373
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 61/102 (59%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + D + L+E LG +PS ++AA ++ +
Sbjct: 81 AFFKEMARYPLLKPDEEVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQ 140
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 141 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 63/107 (58%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + L+ +GCEP+ E+ A +
Sbjct: 82 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVD 141
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 142 MPLQKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 64/111 (57%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + L K+++ ++L +HK L +RLG EPS + A
Sbjct: 13 PTFTADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +S +L L + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 EAADLSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + L+K+++ ++L D K L + L EP + A++ +I+
Sbjct: 11 VRAYLREIGRVPLLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAAKITE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + A+EK+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EELHRAIAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%)
Query: 210 EVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKL 269
E V LS+ I+ L L+ + LKER G EPS Q AA+ + + L+ L L ++K+
Sbjct: 274 EEVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKM 333
Query: 270 VMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ SNVRLV+SIA+ Y G ++ DLVQ
Sbjct: 334 IKSNVRLVISIAKNYQGTGMNLQDLVQ 360
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 105/207 (50%), Gaps = 4/207 (1%)
Query: 91 AEPPNSIEEESSELDYSVEALLLLQKSM-LEKQWNLSFERTVLTDSPSKKTHKKVPVTCS 149
EP N I+ L S EA LL QK L+ + E T L++ ++
Sbjct: 136 VEPTNVIDLARKALSASKEAALLAQKCANLDDTVSTGLEPTDLSNFSLEEVKTVRSTRRL 195
Query: 150 GVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHA 209
++ RR+ K+I + S + K++ P ++ L+ ++ G +++LLT
Sbjct: 196 ERQSKNRRVTKTKEIFHEPYSSRRAGVQKKINEGFDP---KDPLRLFLWGPETKQLLTAK 252
Query: 210 EVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKL 269
E L +++ +SL++ K + K + G +P++ + A ++ +S +QS L + +REKL
Sbjct: 253 EESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKL 312
Query: 270 VMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +N+R+V+ IA++Y G + DL+Q
Sbjct: 313 INANLRMVVHIAKQYQGRGLSLQDLLQ 339
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 64/111 (57%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + L K+++ ++L +HK L +RLG EPS + A
Sbjct: 30 PTFTADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWA 89
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +S +L L + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 90 EAADLSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 140
>gi|354566206|ref|ZP_08985379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353546714|gb|EHC16162.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 318
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ +L + + L +LG EP++E+ A + ++
Sbjct: 11 VRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQLEL 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + +A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 TELNQAIADAEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|427712306|ref|YP_007060930.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376435|gb|AFY60387.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 318
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ SL++ + L+ LG EPS+E+ A+ +S
Sbjct: 11 VRTYLREIGRVPLLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANLSP 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL I+ A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 GELNEIIQGGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 66/104 (63%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E V S++++ ++L+ K L E+ EPS+++ A + +S+
Sbjct: 11 VRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQ 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ L+ A++K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 RELKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQ 114
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 61/101 (60%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL+H E + K+++ +L + L E LG EP++ + A + +S+ EL
Sbjct: 15 YLREIGRVPLLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSEL 74
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q I+ E A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 75 QRIIREGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E +R K+++ +L + + L +LG EP++E+ A ++
Sbjct: 25 VRTYLREIGRVPLLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESKLDI 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L + + +A+ ++V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 85 ADLNDAIADGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 64/104 (61%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E + +K+++ ++L+ + + E G EP+ Q A + ++S+
Sbjct: 11 VRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKLSK 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E +SI+ A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 REFRSIVESGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|148241197|ref|YP_001226354.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147849507|emb|CAK27001.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 324
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 68/111 (61%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + + ++ Y++ + LL+H + + L ++++ + L++ + K R G EPS E+LA
Sbjct: 10 PPVDGDLVRSYLRDIGRVPLLSHEQEITLGRQVQELVRLEEAEAEFKMRQGHEPSREELA 69
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+S IS L+ L+ A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 70 SSFGISPAVLRRRLINGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 120
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + L+K+++ ++L + K L + L EP + A + +IS
Sbjct: 11 VRAYLREIGRVPLLTHEEEIVLAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAAKISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ + A+EK+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EELRRTMAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 67/114 (58%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
M + E+ ++ ++ Y++ + LLTH E V K+++ + L + L E+L +P+
Sbjct: 1 MRTKEIAKDSVRSYLREIGRVPLLTHEEEVTFGKQVQDLIKLQAIRDELAEQLERQPNDA 60
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + ++S ELQ L E A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 61 EWSVAAQLSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|449451030|ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
gi|449482444|ref|XP_004156283.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
Length = 562
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 6/206 (2%)
Query: 92 EPPNSIEEESSELDYSVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGV 151
EP N I L S +A LL+ ++ L S + + L DS SK+
Sbjct: 155 EPENVIALAKKALSASKQAALLVDETELV---GTSLDYSSLDDSLSKEGRTVRSTRLQDR 211
Query: 152 SARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEV 211
+++R++ + + + ++ ++ P + L+ ++ G +++LLT E
Sbjct: 212 RSKKRKVPKHVTTIDEISNFRGKDSRRKTSEKFDP---NDPLRLFLWGPETKKLLTAQEE 268
Query: 212 VRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVM 271
L +I+ + LD+ K RL+ + EP++ + A +L I+ LQS L +REKL+
Sbjct: 269 SELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLIN 328
Query: 272 SNVRLVMSIAQRYDNMGADMADLVQV 297
+N+R+V+ IA++Y G + DL+QV
Sbjct: 329 ANLRMVVHIAKQYQGRGLSLHDLLQV 354
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++T ++L + K L +R+G EPS+++ A + I
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIIYGKQVQTMMNLLEKKEELAQRVGKEPSIQEWAKEVNIEE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
LQ L + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 KALQKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|291565943|dbj|BAI88215.1| group 2 RNA polymerase sigma factor SigD [Arthrospira platensis
NIES-39]
Length = 331
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ L + + L ++L EP+ Q A + +S
Sbjct: 24 VRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLAYEPTEAQWAELVNLSV 83
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ IL + LA+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 84 AQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 127
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 63/102 (61%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + + + L+E+LG +P+ Q+AA L ++ +
Sbjct: 69 AFFKEMARYPLLKADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQ 128
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 129 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 60/102 (58%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+K ++ + +D + RL+ LG +P+ +LA L ++ +
Sbjct: 69 AFFKEMARYPLLKPEEEVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQ 128
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L++ L +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 129 LENRLYRGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 61/102 (59%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + D + L+ +LG P+ Q+AA L I+ +
Sbjct: 70 AFFKEMARYPLLKPDEEVELARRVRFLEEVRDLQADLQLQLGLHPTKAQVAAQLEITEKQ 129
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L++ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 130 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 171
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E +R K+++ +L + + L +L +P++E+ AA+ +I
Sbjct: 11 VRTYLREIGRVPLLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQIEL 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + E A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 VELNEAIAEGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ +L + + L +LG +P++E+ A + ++
Sbjct: 25 VRTYLREIGRVPLLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEP 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + +A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 85 VELNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 63/102 (61%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ +++ + L++ LG +P+ +AA L+I+ +
Sbjct: 81 AFFKEMARYPLLKPDEEVELARRVRFLEEVNEIQAALRQELGHQPTKASIAAHLQITEKQ 140
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L++ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 141 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ L + K +L +RLG EPS + A + +S
Sbjct: 12 VRTYLREIGRVPLLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSL 71
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ L + A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 72 KELKQALEDGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 24/151 (15%)
Query: 146 VTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEEL 205
V CSGV NSK+K K R +I L RL +++ + E
Sbjct: 206 VACSGV-------NSKRK-------------DKFGRVLIQTSLF--RL--FLRDRETTEF 241
Query: 206 LTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLA 265
LT E ++ +I+ + L+ + L+ + G EP++E+ A ++ +S ELQS +
Sbjct: 242 LTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRC 301
Query: 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
REK+ SN RLV+ +A++Y+ G D+ DLVQ
Sbjct: 302 REKMARSNFRLVIHVARKYEGCGLDIQDLVQ 332
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 62/102 (60%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + + + L+ +LG +PS Q+A+ L I+ +
Sbjct: 81 AFFKEMARYPLLKPDEEVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQ 140
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 141 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|399950016|gb|AFP65672.1| RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168]
Length = 485
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL E ++L+++I L + K+ L+E+L EP+ + A+ ++S
Sbjct: 135 VRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSD 194
Query: 253 -PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++IL A+E++V +N+RLV+SIA+RY N G + DL+Q
Sbjct: 195 VKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQ 239
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 66/104 (63%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E V S++++ ++L+ K L E+ EPS+++ A + +S+
Sbjct: 11 VRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQ 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L+ A++K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 RQLKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQ 114
>gi|428780048|ref|YP_007171834.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694327|gb|AFZ50477.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 375
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 60/102 (58%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E + L++K+K +++ + L G P+ E+LAA++ +S E
Sbjct: 68 AFFKEMARYPLLQPDEEIELAQKVKFLADMENKRQELAIESGSSPTKEELAATVSLSVKE 127
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + LA+ +++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 128 LERKLHQGRLAKRQMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 169
>gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Length = 490
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL E ++L+++I L + K+ L+E+L EP+ + A+ ++S
Sbjct: 132 VRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSD 191
Query: 253 -PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +SIL A+E++V +N+RLV+SIA+RY N G + DL+Q
Sbjct: 192 VKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQ 236
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ +L + + L +LG +P++E+ AA+ ++
Sbjct: 42 VRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNLEEWAAATKLET 101
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L + + +A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 102 TALNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 145
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ +L + + L +LG EP++E+ AA+ I
Sbjct: 11 VRTYLREIGRVPLLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASDIEV 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + +A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 SELNQAIAVGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL E ++L+ +K ++ +L L E LG PS E+ AA L+
Sbjct: 59 EDTVGAFFKEMARYPLLKPDEEIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLK 118
Query: 250 ISR-PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ EL S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 119 IATIRELNSQLYKGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 166
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
K +++ + E LT E +L +++ + L++ + RL+ + G EP++E+ A ++ +S
Sbjct: 250 FKLFLRDPETTEFLTAKEEKQLFSEVQNLMKLEEAQRRLEAQCGREPAIEEWAKAVGMSC 309
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQS + REK+ SN RLV+ +A++Y G D+ DLVQ
Sbjct: 310 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQ 353
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 66/104 (63%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E V S++++ ++L+ K L E EP++++ A + +I++
Sbjct: 11 VRSYLKEIGRVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAKITQ 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ + + A++K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 KELKKRMSIGAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQ 114
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 178 KQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC 237
K+L+ M +P + ++ Y++ + +LL+ +E V LS+KI+ L L+ + L+ +G
Sbjct: 259 KKLQIMRTP---SDPIRSYLRDIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGR 315
Query: 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EP++ + + ++ + + L+ + E A++KLV SN+RLV+SI + Y G + DL+Q
Sbjct: 316 EPTLSEWSQAVSLDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQ 374
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 177 SKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG 236
SK + M S +++ + Y+ + LLTH + + K+++ +SL + K +L + G
Sbjct: 8 SKTKQPMYSADMV----RTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQG 63
Query: 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EPS ++ A ++ + PELQ + + + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 64 TEPSDKEWAKAVNLKEPELQKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 196 YVKGVVS-EELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
Y++G S LLT E + LS+ I+ L L+ + L+ER G +P+ Q AA+ + +
Sbjct: 267 YLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKT 326
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ ++K++ SN+RLV+SIA+ Y G ++ DLVQ
Sbjct: 327 LRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQ 368
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 196 YVKGVVS-EELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
Y++G S LLT E + LS+ I+ L L+ + L+ER G +P+ Q AA+ + +
Sbjct: 270 YLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKT 329
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ ++K++ SN+RLV+SIA+ Y G ++ DLVQ
Sbjct: 330 LRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQ 371
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 60/101 (59%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
+++ + E LT E ++ +I+ + L+ + L+ + G EP++E+ A ++ +S EL
Sbjct: 233 FLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCREL 292
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
QS + REK+ SN RLV+ +A++Y+ G D+ DLVQ
Sbjct: 293 QSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 333
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 60/101 (59%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
+++ + E LT E ++ +I+ + L+ + L+ + G EP++E+ A ++ +S EL
Sbjct: 232 FLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCREL 291
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
QS + REK+ SN RLV+ +A++Y+ G D+ DLVQ
Sbjct: 292 QSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 332
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL E ++L+++I L + K+ L+E+L EP+ + A+ ++S
Sbjct: 132 VRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSD 191
Query: 253 -PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++IL A+E++V +N+RLV+SIA+RY N G + DL+Q
Sbjct: 192 VKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQ 236
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ + L+ K LK +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 60/104 (57%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
K +++ + E LT E L KI+ + +++ +L+ + G EP++ + A ++ +S
Sbjct: 261 FKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSS 320
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
ELQS + REK+ SN RLV+ +A++Y+ G D+ DLVQ
Sbjct: 321 KELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQ 364
>gi|427728873|ref|YP_007075110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427364792|gb|AFY47513.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 309
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 66/104 (63%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + ++++ +++++HK +L ++L EP++ +LA + S
Sbjct: 2 VRVYLQEIGQFPLLTSDQEITYGRQVQQMIAIEEHKQQLSQQLHREPTLAELADFVNKSE 61
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E+ IL + A++K++ +N+RLV+S+A++Y + + DLVQ
Sbjct: 62 TEVNQILQQGQRAKQKMITANLRLVVSVAKKYQHRNLEFLDLVQ 105
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 63/107 (58%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L+ + L+ +GCEP+ E+ A +
Sbjct: 76 EDSIRLYLQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVG 135
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P+ + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 136 QALPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 182
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L + K L + L +PS+E+ A + ++
Sbjct: 25 VRTYLREIGKVPLLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDP 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL +L + +A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 85 QELNRLLGQGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 181 RSMISPELIQNRLKGYVKGVVSE-ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239
+ +++ E+ N Y++ S +LLT E LS I+ L L+ + L ER G +P
Sbjct: 247 KRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERCGRQP 306
Query: 240 SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ Q A++ + + L+ + +L ++K++ SN+RLV+SIA+ Y G ++ DLVQ
Sbjct: 307 TFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 363
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLT E ++LS I+ L L+ + L ER G +P+ Q AA + + L+ L
Sbjct: 260 LLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIF 319
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++K++ SN+RLV+SIA+ Y G ++ DLVQ
Sbjct: 320 CKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQ 351
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E +R K+++ +L + + L + G EPS+E+ A + ++
Sbjct: 25 VRTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNP 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L + + +A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 85 ADLLEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L+ K L E+LG EP++ + A + +S
Sbjct: 23 VRTYLQEIGRVPLLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASSLSE 82
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
ELQS + A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 83 AELQSCIRAGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 126
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ + L+ K L+ +LG EPS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 60/106 (56%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y++ + LLTH + + K+++ ++L K L LG EP+ Q A + +
Sbjct: 9 DTVRAYLREIGRVPLLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACEL 68
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
ELQ + LA+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 69 EEQELQQAIATAELAKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQ 114
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ + L+ K LK +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|220906009|ref|YP_002481320.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219862620|gb|ACL42959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 372
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 63/102 (61%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
++K + LL +E + L++++K + L + K +L +LG ++ ++AA++ ++ +
Sbjct: 64 AFLKDMARYPLLQPSEEIELARRVKYLVELSELKDQLGRQLGRSATLPEVAAAMNLTEQQ 123
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
LQ + +A+ K++ SN+RLV+SIA+RY N G DLVQ
Sbjct: 124 LQIRIYRGQVAKSKMIRSNLRLVVSIAKRYLNRGVPFLDLVQ 165
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 181 RSMISPELIQNRLKGYVKGVVSE-ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239
+ +++ E+ N Y++ S +LLT E LS I+ L L+ + L ER G +P
Sbjct: 247 KRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQP 306
Query: 240 SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ Q A++ + + L+ + +L ++K++ SN+RLV+SIA+ Y G ++ DLVQ
Sbjct: 307 TFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 363
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L + K L + L +PS+E+ A + ++
Sbjct: 25 VRTYLREIGKVPLLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDP 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL +L + +A+ K+V +N+RL++S+A++Y D+ DL+Q
Sbjct: 85 QELNRLLAQGEIAKRKMVEANLRLLVSVAKKYIKRNVDLLDLIQ 128
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 60/102 (58%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E + L+ +++ + +D+ RL + LG +P+ +LA +L ++ +
Sbjct: 66 AFFKEMARYPLLKPEEEIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQ 125
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ L +++ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 126 FENRLYRGQISKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 167
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 63/107 (58%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL+E+L EP + A +++
Sbjct: 80 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQEQLEREPEYREWAEAVQ 139
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 140 IPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 64/115 (55%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
S P + ++ Y+ + LLTH + + L K+++ ++L D K ++KE LG +PS
Sbjct: 9 SKAKPLFTADAVRTYLHEIGRVPLLTHEQEIVLGKQVQQFMTLLDLKTQMKESLGQDPSD 68
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ A + + L L E A+ +++ +N+RLV++IA++Y + DL+Q
Sbjct: 69 QEWAGAAHLDTATLTQQLHEGEQAKRQMIEANLRLVVAIAKKYQKRNLEFLDLIQ 123
>gi|162605994|ref|XP_001713512.1| RNA-polymerase sigma factor [Guillardia theta]
gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor [Guillardia theta]
Length = 460
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL E ++L+++I L + K+ L+++L EP+ + A+ ++S
Sbjct: 115 VRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACKVSD 174
Query: 253 -PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +SIL A+E++V +N+RLV+SIA+RY N G + DL+Q
Sbjct: 175 VRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQ 219
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
Query: 154 RQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSE-ELLTHAEVV 212
+ RR +K S S+ + K+ R +++ E+ N Y++ S +LLT E
Sbjct: 221 KARRAKGLEKTASGIPSVKTGSSPKKKR-LVAQEVDHNDPLRYLRMTTSSSKLLTVREEH 279
Query: 213 RLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMS 272
LS I+ L L+ + L ER G +P+ Q A++ + + L+ + +L ++K++ S
Sbjct: 280 ELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKS 339
Query: 273 NVRLVMSIAQRYDNMGADMADLVQ 296
N+RLV+SIA+ Y G ++ DLVQ
Sbjct: 340 NIRLVISIAKNYQGAGMNLQDLVQ 363
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 59/102 (57%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+K+++ + D + L+ LG +P+ Q+A I+ +
Sbjct: 80 AFFKEMARYPLLKPDEEVELAKRVRFLEDVKDLQEALELELGQQPTKAQIADKFEITEKQ 139
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L++ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 140 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 181
>gi|56752354|ref|YP_173055.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
gi|56687313|dbj|BAD80535.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
Length = 320
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL 244
SP+L+ + Y++ + LLT E + ++++ + L D + L++RLG EPS E+
Sbjct: 9 SPDLV----RAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEW 64
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
AA++ ++ +L + + A+ K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 65 AAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQ 116
>gi|22298374|ref|NP_681621.1| RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1]
gi|22294553|dbj|BAC08383.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 309
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L K+++ ++L + + L + LG E + E+ AA+ ++
Sbjct: 2 VRTYLQEIGRVPLLTHEQEIILGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTP 61
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL +IL A++K++ +N+RLV+S+A++Y ++ DLVQ
Sbjct: 62 TELCNILKRGERAKQKMIEANLRLVVSVAKKYQKRNLELLDLVQ 105
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 61/102 (59%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L++++K + +D L+E+L +P+ ++AA++ ++ +
Sbjct: 65 AFFKEMARYPLLKPDEEVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQ 124
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 125 LEGNLYRGRVAKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQ 166
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT E L +I+ ++L+ K RL+ + G EP++ + A ++ +S
Sbjct: 223 LRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSC 282
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + +REKL+ +N+R+V+ IA+RY N G + DL+Q
Sbjct: 283 HVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQ 326
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ + L+ K L+ +LG EPS Q + + IS
Sbjct: 11 VRSYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|81300555|ref|YP_400763.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
gi|123556657|sp|Q31ME3.1|RPOD2_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD2
gi|81169436|gb|ABB57776.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL 244
SP+L+ + Y++ + LLT E + ++++ + L D + L++RLG EPS E+
Sbjct: 9 SPDLV----RAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEW 64
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
AA++ ++ +L + + A+ K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 65 AAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQ 116
>gi|194476921|ref|YP_002049100.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
gi|171191928|gb|ACB42890.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
Length = 321
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 67/104 (64%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH + + L ++++ + + + + +L+ + G +P+ E+LA SL +S
Sbjct: 15 VRSYLKEISRIPLLTHEQEITLGRQVQELICIQETEQKLELKNGIKPTQEELANSLDLSI 74
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ ++ A+E++V SN+RLV+SIA++Y ++ DLVQ
Sbjct: 75 NQVKRKIIHGKRAKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQ 118
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 177 SKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG 236
SK + M S +++ + Y+ + LLTH + + K+++ +SL + K +L + G
Sbjct: 8 SKTKQPMYSADMV----RTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQG 63
Query: 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EPS ++ A ++ + PEL+ + + + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 64 TEPSDKEWAKAVNLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 60/102 (58%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + D + L+ ++G P+ Q+A L I+ +
Sbjct: 82 AFFKEMARYPLLKPDEEVELARRVRFLEEVRDLQADLQLQIGQHPTKAQVAGQLEITEKQ 141
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L++ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 142 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 183
>gi|428305801|ref|YP_007142626.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428247336|gb|AFZ13116.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 373
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 65/109 (59%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L ++ + + K + LL E V L+ +++ L +++ + RL+ +L +PS ++A S
Sbjct: 58 LSEDTVGAFFKEMARYPLLKAEEEVDLANQVQFILQIEEIEERLEAQLNHKPSKAEIAES 117
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L ++ +L L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 118 LGMNEKQLDHRLYQSRVAKRKMIRSNLRLVVSIAKRYLNRGVAFLDLIQ 166
>gi|308205502|gb|ADO18992.1| RNA polymerase sigma 70 subunit [Nostoc flagelliforme str.
Sunitezuoqi]
Length = 165
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 63/101 (62%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + LLT + + ++ ++ +++++ + L +L EP+ +LA SL S E+
Sbjct: 12 YLKEIGRYPLLTPEQEITNARLVQQMMAIEEQRSNLALQLNREPTTRELATSLGQSEAEV 71
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+SIL + A++K+V +N+RLV++IA++Y N + DL+Q
Sbjct: 72 ESILHQGERAKQKMVTANLRLVVAIAKKYQNRNLEFLDLIQ 112
>gi|186687052|ref|YP_001870195.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186469355|gb|ACC85154.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 316
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
M+SP + ++ Y+K + LLT + + ++ ++ +++++ + L +L +P+
Sbjct: 1 MLSP--TTDSVRSYLKEIGRYPLLTPDQEITNARLVQQMMAVEEQRSNLALQLNRQPTDL 58
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LA SL + ELQS++ + A++K+V +N+RLV+S+A++Y N D DL+Q
Sbjct: 59 ELATSLGQNEAELQSVIQQGQKAKQKMVTANLRLVVSVAKKYQNYSLDFLDLLQ 112
>gi|2385506|dbj|BAA22190.1| RpoD2 protein [Synechococcus elongatus PCC 7942]
Length = 320
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL 244
SP+L+ + Y++ + LLT E + ++++ + L D + L++RLG EPS E+
Sbjct: 9 SPDLV----RAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEW 64
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
AA++ ++ +L + + A+ K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 65 AAAVDLNLEDLDREIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQ 116
>gi|19910026|dbj|BAB87264.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 427
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA-ASLRISRPE 254
++K V S ELL+ E + LS++I+ + L+ K RL R+G EP ++ A A+ P
Sbjct: 108 FIKEVGSFELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAGTQPGPA 167
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA-DMADLVQ 296
QS +++ AR +LV SN+R V+SIA++Y N + DL+Q
Sbjct: 168 FQSRILKGRRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQ 210
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
G + + +LLT E V LS I+ L L+ + L E GC+P+ Q AA+
Sbjct: 241 GSLWKLTGRKLLTAKEEVELSNGIQDLLKLEAIQAELAEYSGCQPTFPQWAAAAGTDEKT 300
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L ++ ++V SNVRLV+SIA+ ++ G ++ DL+Q
Sbjct: 301 LRKRLAHGIYSKNRMVTSNVRLVISIAREFEGPGLELYDLIQ 342
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL+H E + +K+++ ++L+ + + + G EP+ Q A + ++SR
Sbjct: 11 VRAYLKEIGRVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKLSR 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E S++ A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 KEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 60/102 (58%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + + LKE+ G +PS ++AA ++ +
Sbjct: 79 AFFKEMARYPLLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQ 138
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L++ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 139 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 180
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E ++ K+++ + L++ + L +LG EP++E+ A + +
Sbjct: 11 VRTYLREIGKVPLLSHEEEIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASELEP 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + A+ ++V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 LELNQAIADADEAKRRMVEANLRLVVSVAKKYLKRNVDLLDLIQ 114
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 62/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL ERL +P + AA ++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSERLERDPKDSEWAAEVQ 138
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 139 LPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 64/101 (63%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LLT + ++L ++++T + L+ K +L + G EPSME + + EL
Sbjct: 27 YLRDIGRSPLLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAADLEIAEL 86
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q++L + A++K++ +N+RLV++IA++Y + ++ DL+Q
Sbjct: 87 QTLLEKGHKAKQKMITANLRLVVTIAKKYRDRNLELLDLIQ 127
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + V K+++ ++++ + +L L EP+ + AA+ IS
Sbjct: 8 VRTYLREIGRVPLLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISE 67
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL++I+ A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 68 GELETIIENGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 111
>gi|427735326|ref|YP_007054870.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370367|gb|AFY54323.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 332
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 62/101 (61%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y + +V LLT E + L+K+++ +SL K L E+L +P++++ + +++ EL
Sbjct: 26 YFQDIVRIPLLTSEEEIFLAKQVQQRISLLALKEELSEKLQRQPTLQEWSVKAQLNDSEL 85
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + +A++K++ +N+RLV++IA++Y D DL+Q
Sbjct: 86 LEQINQGQIAKQKMIAANLRLVVTIAKKYQKRNLDFPDLIQ 126
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH E + K+++ ++L D + + + LG EPS+E+ A +S
Sbjct: 20 VRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKANLSP 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L + A++K++ +N+RLV+S+A++Y ++ DL+Q
Sbjct: 80 SQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 123
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL+H E + +K+++ ++L+ + + + G EP+ Q A + ++SR
Sbjct: 11 VRAYLKEIGRVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKLSR 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E S++ A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 KEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 181 RSMISPELIQNRLKGYVKGVVSE---ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC 237
+ +++ E+ N Y++ S +LLT E LS I+ L L+ + L ER G
Sbjct: 247 KRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVREEHELSAGIQDLLKLERLQTELTERSGR 306
Query: 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+P+ Q A++ + + L+ + +L ++K++ SN+RLV+SIA+ Y G ++ DLVQ
Sbjct: 307 QPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 365
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 60/102 (58%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + D + L+ LG +PS ++A+ ++ +
Sbjct: 69 AFFKEMARYPLLKADEEVELARRVRFLEEVKDLQAALELELGQQPSKNEVASKFEMTEKQ 128
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 129 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 63/107 (58%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L+++I L L+ + +L E CEP + A+++
Sbjct: 80 EDSIRLYLQEIGRIRLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVD 139
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ PE + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 140 MALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E ++ K+++ L + + L ++G EPS+E+ A + +
Sbjct: 25 VRTYLREIGRVPLLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAANLEV 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 85 AELNDAIADGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|428208337|ref|YP_007092690.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010258|gb|AFY88821.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 400
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 62/102 (60%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + +++ + L+++L +P+ E+L A L IS +
Sbjct: 92 AFFKEMARYPLLKADEEVELARRVRFLVEVEETQRGLQKQLKRQPNREELIAELGISDKQ 151
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 152 LEHQLYLGRVAKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQ 193
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 63/107 (58%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL E+L EP ++ A +++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLYEQLEREPQFKEWAEAVQ 138
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 139 LPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 64/107 (59%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL+++L EP + A +++
Sbjct: 82 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQQQLEREPQYSEWAEAVQ 141
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P+ + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 142 LPLPQFRHRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|443289588|ref|ZP_21028682.1| RNA polymerase sigma factor rpoD [Micromonospora lupini str. Lupac
08]
gi|385887203|emb|CCH16756.1| RNA polymerase sigma factor rpoD [Micromonospora lupini str. Lupac
08]
Length = 338
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 19/114 (16%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-CEPSME 242
IS +L+ + Y+ G+ +LLT A+ V L+++I+ GL D E+L C P E
Sbjct: 36 ISTDLV----RAYLNGIGRTKLLTAAQEVDLARRIEAGLFAD-------EKLATCTPVSE 84
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L R +L+ I+ E A++ L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 85 EL-------RADLELIVAEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 131
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS-----MEQL 244
++ ++ Y++ + LL E + L++KI L L+ + R+ E+L C+P E
Sbjct: 66 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRISEQLDCDPDDLERHPEPW 125
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ ++++ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 126 ASEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 177
>gi|78183723|ref|YP_376157.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78168017|gb|ABB25114.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 332
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L ++++ + ++ + L+ R G +P+ +QLA + +S
Sbjct: 25 VRSYLRDIGRVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELST 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L + A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 85 VQLKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 128
>gi|116071698|ref|ZP_01468966.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065321|gb|EAU71079.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 332
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L ++++ + ++ + L+ R G +P+ +QLA + +S
Sbjct: 25 VRSYLRDIGRVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELST 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L + A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 85 VQLKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 128
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E + +K+++ + L+ K L+ +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|428225416|ref|YP_007109513.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985317|gb|AFY66461.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 327
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 64/111 (57%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ ++L + + E LG EPS ++ A
Sbjct: 13 PTLHTDMVRTYLHEIGRVPLLTHEQEIIYGKQVQQMMALLQKQEAIAETLGREPSQQEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++S +L L + A++K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 73 EGVQLSEADLAKALKQGQRAKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQ 123
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E + +K+++ + L+ K L+ +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E + +K+++ + L+ K L+ +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L K L E LG +P+ + A ++ +S
Sbjct: 12 VRAYLREIGRVPLLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVGLSE 71
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ + + A+ ++V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 72 AQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E + +K+++ + L+ K L+ +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 63/107 (58%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL+++L EP ++ A ++
Sbjct: 81 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQDQLEREPQFKEWAEAVE 140
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 141 LPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 187
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L K L E LG +P+ + A ++ +S
Sbjct: 12 VRAYLREIGRVPLLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVGLSE 71
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ + + A+ ++V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 72 AQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E + +K+++ + L+ K L+ +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L + K L +L EP++E+ AAS +
Sbjct: 11 VRTYLREIGRVPLLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAGLES 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + +A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 AELSKAIALGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ +L++RLG P+ + A ++
Sbjct: 63 EDSIRVYLQEIGRIRLLRAEEEIELARKIADLLELERIYEQLRKRLGRFPNNREWAEAVE 122
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P Q L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 123 MELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 169
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + R+ +RL PS + A +
Sbjct: 61 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERYPSDAEWAEEVN 120
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ PE + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 121 MRLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 167
>gi|78780107|ref|YP_398219.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713606|gb|ABB50783.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 344
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 66/104 (63%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ +L + E G +PS+E+L++ L +S
Sbjct: 37 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEIIELTGDKPSIEELSSKLNLSI 96
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
P ++ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 97 PIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 140
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L + L +LG EP++E+ + + RI +
Sbjct: 11 VRTYLREIGRVPLLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAARIDK 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L + + E +A+ ++V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 TALSTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH E + K+++ ++L D + + LG EPS E+ AA +S
Sbjct: 20 VRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTEMDELGREPSSEEWAAKANLSP 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L + A++K++ +N+RLV+S+A++Y ++ DL+Q
Sbjct: 80 SQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 123
>gi|186680839|ref|YP_001864035.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186463291|gb|ACC79092.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 378
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 61/102 (59%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + + + L +LG EP+ ++A+ L ++ +
Sbjct: 70 AFFKEMARYPLLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQ 129
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 130 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 171
>gi|158337702|ref|YP_001518878.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158307943|gb|ABW29560.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL H E + K+++ ++L D K L+E L EP+ + A IS +L
Sbjct: 14 YLREIGRFPLLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q L A K+V SN+RLV+SIA++Y+ + DL+Q
Sbjct: 74 QKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQ 114
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 60/104 (57%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ SL + + L +L +P++E+ A + +
Sbjct: 11 VRSYLREIGRVPLLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDI 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 AELNEAIADGEFAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L+ LG PS ++ A +
Sbjct: 66 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRNLGRYPSDKEWAQQVG 125
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P Q L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 126 MELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 172
>gi|411116559|ref|ZP_11389046.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410712662|gb|EKQ70163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 327
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + +LTH + + K+++ ++L + K L ++L EP+ +LA+ +S
Sbjct: 20 VRTYLHEIGRVPMLTHEQEIIYGKQVQQMMALQEKKEALAKKLNREPTDAELASHTNLSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I+ A++K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 80 DELKGIMHRGRRAKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQ 123
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL E+L EP + A +
Sbjct: 62 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLEREPGDREWATEVD 121
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 122 MELPAFRYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 168
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL ERL +P + AA +
Sbjct: 80 EDSIRLYLQEIGRIRLLRADEEIELARKIAELLELERARERLCERLERDPRDSEWAAEVS 139
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 140 LPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H E + +K+++ + L+ K L+ +LG +PS Q + + IS
Sbjct: 11 VRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAAEISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 EQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 187 ELIQNR-LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
EL QN L +++G +++LLT + +L +I+ L L++ K +L+ + G EP+M + A
Sbjct: 255 ELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWA 314
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ L + L S +REKL+ +N+R+V+ +A+ Y G + DL+Q
Sbjct: 315 EGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQ 365
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
I + + + K + LL E V L+ +K + ++ + +LKE+L +P+ E+ +L
Sbjct: 53 IDDNIGAFFKEMARYPLLKPEEEVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKAL 112
Query: 249 RI-SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ S +L++ L +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 113 QLESIRQLENRLYRGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 161
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 64/108 (59%), Gaps = 7/108 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR------ 249
Y++ + LL E V L+++++ + L D +LRL++ LG EP++ + AA
Sbjct: 49 YLQEIGRVPLLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWA 108
Query: 250 -ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +LQ I A+E ++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 109 NLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 156
>gi|288923254|ref|ZP_06417393.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288345398|gb|EFC79788.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 400
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 19/104 (18%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRIS---R 252
Y+K + LLT AE V L+K+I+ GL + E+LAA+ +IS R
Sbjct: 107 YLKTIGRVRLLTAAEEVDLAKRIEAGLF----------------ASEKLAATRKISPQLR 150
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ++ + +A+ KLV +N+RLV+SIA+RY G + DL+Q
Sbjct: 151 QDLQAVEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQ 194
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRP 253
+ K + LL E ++L+ +K ++ +L L+E+LG P+ E+ A+ L + +
Sbjct: 56 AFFKEMARYPLLKPDEEIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVK 115
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 116 QLNSALYKGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 158
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 61/101 (60%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
++ G +++LLT E +L +I+ L++ K+RL+ + G EP+M + A + +S L
Sbjct: 2 FLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYAL 61
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q+ L + ++EKL+ +N+R+V+ +A+ Y G DL+Q
Sbjct: 62 QTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQ 102
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 64/104 (61%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L D K L ++L EPS+E+ AA ++ S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKKSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E++ + + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 SEVKQTVQQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 63/107 (58%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L ++ + RL E+L EP + A +++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIAELLEMERVRERLLEQLDREPQDSEWAEAVQ 138
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+S P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 139 LSLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|428307386|ref|YP_007144211.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248921|gb|AFZ14701.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 327
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 61/111 (54%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + K+++ ++L D K L E+ EP+ + A
Sbjct: 13 PLFTADMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMALIDAKEALAEQQNREPTASEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A + +S EL I+ A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 AQVHLSEDELTRIITLGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ ++L + K L +LG EPS+ + A +++
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIVYGKQVQRMMTLLEKKEELASKLGHEPSLTEWANYVQLGE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 DELNRAIAQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + K+++ +SL K L E L EP++E+ A + +
Sbjct: 20 VRTYLQEIGKVPLLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREPTLEEWAQAAEKTP 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ ++ + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 AELKKLIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L+ LG PS ++ A +
Sbjct: 65 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRSLGRYPSDKEWAEQVG 124
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P Q L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 125 MELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 171
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 59/101 (58%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+KG+ LLTH + + L K ++ + L+ + L E + EP++ + A + +S L
Sbjct: 14 YLKGIGRFPLLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPEAL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + A++K++ SN+RLV+SIA++Y DM DL+Q
Sbjct: 74 KKTVEIGQQAKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQ 114
>gi|78211648|ref|YP_380427.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196107|gb|ABB33872.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 335
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 64/104 (61%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L ++++ + L+ + LK + G +PS +QLA + +S
Sbjct: 28 VRSYLRDIGRVPLLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGLSS 87
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 88 IQLKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 60/102 (58%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + D + L+E+LG S ++A+ ++ +
Sbjct: 91 AFFKEMARYPLLKPDEEVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQ 150
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 151 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 192
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 56/95 (58%)
Query: 202 SEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILME 261
S LLT +E V LS+ I+ + LD + + KE+ G EP++ Q A + + + L+ L
Sbjct: 291 SSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEV 350
Query: 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +K++ N+RLV+S+A+ Y N G + DL+Q
Sbjct: 351 GRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQ 385
>gi|428207075|ref|YP_007091428.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008996|gb|AFY87559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 330
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L D K L ++L EP+ME+ A + S
Sbjct: 23 VRTYLREIGRVPLLTREQEIVYGKQVQQMMALLDAKEALVKKLRREPTMEEWTAKVNTSE 82
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL ++ + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 83 AELNDLIRKGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 126
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L + L P+ + AAS+
Sbjct: 65 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELEQKREKLWQELKRIPNDREWAASVE 124
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 125 MELPAFRRRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 171
>gi|443316918|ref|ZP_21046344.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783448|gb|ELR93362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 317
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 189 IQNR--LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAA 246
IQN ++ Y+K + LLTH E + L K+++ L+ + L E L P+ + AA
Sbjct: 4 IQNTDLVRTYLKEIGRVPLLTHEEEIVLGKQVQHLSLLEKRREALTEELDRTPTQAEWAA 63
Query: 247 SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +S +L +I+ A+ ++V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 64 AVNLSEGQLLTIVRAGDTAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 113
>gi|299472559|emb|CBN79861.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 694
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ V +LL E + L ++I+ G+S ++ + L+ G EPS E+ A +L + R EL
Sbjct: 54 YLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREEL 113
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L S A+ ++ +N+RLV+S+A+RY DL+Q
Sbjct: 114 VKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQ 154
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 56/95 (58%)
Query: 202 SEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILME 261
S LLT +E V LS+ I+ + LD + + KE+ G EP++ Q A + + + L+ L
Sbjct: 194 SSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEV 253
Query: 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +K++ N+RLV+S+A+ Y N G + DL+Q
Sbjct: 254 GRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQ 288
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT E + L+K+I+ ++L+ + LK++L EPS ++ A + +IS
Sbjct: 11 IRVYLKEIGRIPLLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L + A+ K+V +N+RLV+SIA++Y D+ DL+Q
Sbjct: 71 KNLDIKISRGEKAKRKMVEANLRLVVSIAKKYLKHNLDLLDLIQ 114
>gi|123967051|ref|YP_001012132.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201417|gb|ABM73025.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 333
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ +L + E +PS+E+LAA L +S
Sbjct: 26 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEIIELTDNKPSVEELAAKLNLSS 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 86 SQIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 129
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT E + K+++ ++L D K L + L +PS+ + AA + +
Sbjct: 20 VRTYLREIGRVPLLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVNLPE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E+ I+ + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 KEVTQIVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 60/102 (58%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L++++K + ++ + RL+ + +P+ ++A L +S +
Sbjct: 76 AFFKEMARYPLLKPEEEVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQ 135
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 136 LEHRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQ 177
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL ++L EP + A +
Sbjct: 69 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVE 128
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 129 MELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 175
>gi|425447372|ref|ZP_18827361.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
gi|389732078|emb|CCI03931.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
Length = 328
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|113474981|ref|YP_721042.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166029|gb|ABG50569.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 496
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y K V S L E + L+ +I L+L+ +L+E+L P+ + A +
Sbjct: 186 EDSIQLYYKQVNSFARLHPEEEIHLAHQIDGLLALEKIYEKLEEKLNRSPNEIEWATEAK 245
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+S+ EL L + A+ ++V +N+RLV S+A+RY N G D DL+Q
Sbjct: 246 MSKWELCDRLEQGRRAKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQ 292
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 65/113 (57%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
+S + + ++ Y++ + LLT + + K+++ ++L D K L ++LG EPS+ +
Sbjct: 11 LSTKFTADMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEALSKKLGHEPSLTE 70
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A + S E+ + + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 71 WATHVNQSENEVTQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E + L+++++ + ++D+ + E L P+ +LA + + +
Sbjct: 159 AFFKEMARYPLLQPTEEIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQ 218
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + A+ +++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 219 LRQKLRQARAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 260
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH + V K+++ ++L ++ +L+ L EPS + A + IS
Sbjct: 11 VRTYLKEIGRVPLLTHEQEVVYGKQVQRFVALQAYRTKLEASLEREPSKLEWAEAAGISV 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + LA+ ++V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 DELTQAMDAGDLAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|413932356|gb|AFW66907.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 292
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 217 KIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRL 276
+I+ + L+ + L+ + G EP++E+ A ++ +S ELQS + REK+ SN RL
Sbjct: 4 QIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRL 63
Query: 277 VMSIAQRYDNMGADMADLVQ 296
V+ +A++Y+ G D+ DLVQ
Sbjct: 64 VIHVARKYEGCGLDIQDLVQ 83
>gi|425455107|ref|ZP_18834832.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
gi|389804051|emb|CCI17083.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
Length = 328
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 63/111 (56%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + K+++ ++L + K +L LG EP++ + A
Sbjct: 13 PTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPNLTEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++S EL + + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 NQVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL E+L +P + A +++
Sbjct: 80 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQ 139
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 140 LPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
++ ++ Y++ + LL E + L++KI L L+ + L E+L EP + A +
Sbjct: 77 FTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEA 136
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 137 VKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL E+L +P + A +++
Sbjct: 78 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQ 137
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 138 LPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 184
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 64/108 (59%), Gaps = 7/108 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL------- 248
Y++ + LL E V L++K++ + L D +LRL++ LG +P++ + A
Sbjct: 51 YLQEIGRVPLLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWA 110
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ +LQ I A+E ++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 111 QLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 158
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
++ ++ Y++ + LL E + L++KI L L+ + L E+L EP + A +
Sbjct: 77 FTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEA 136
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 137 VKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLTH E + L K+++ +SL L + L EP+ + AA+ IS EL +I+
Sbjct: 3 LLTHEEEILLGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQ 62
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ ++V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 63 AKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 94
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|172035560|ref|YP_001802061.1| RNA polymerase sigma factor [Cyanothece sp. ATCC 51142]
gi|354554809|ref|ZP_08974112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697014|gb|ACB49995.1| group 2 sigma-70 RNA polymerase sigma factor B [Cyanothece sp. ATCC
51142]
gi|353552963|gb|EHC22356.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 328
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 59/104 (56%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ +SL + K L + LG EPS+++ A + +
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEWAKEVNLEE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L L + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 KALTKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 60/104 (57%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ L + L ER EP+ + A + +S
Sbjct: 11 VRTYLREIGRVPLLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ ++ E LA+ ++V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 ADLEQVIQEGELAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L +RL EP + A +++
Sbjct: 81 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSDRLDREPQDSEWAEAVK 140
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 141 QNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 187
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP + A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 59/104 (56%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +SL K L E G EPS+ + A + I
Sbjct: 11 VRTYLREIGRVPLLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAANIDE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ + A+ ++V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 LQLQKTISAGENAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQ 114
>gi|299115565|emb|CBN75768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ectocarpus
siliculosus]
Length = 244
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLT AE L KI+T + + L LG P+ + A S R++ EL+ L
Sbjct: 22 LLTRAEEYELGTKIQTLMGHVGARQELAAGLGRAPTFSEWAESRRMTVVELEESLKVGGA 81
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A++ +V +N+R+V+SIA++Y ++G + DL+Q
Sbjct: 82 AKKTMVEANMRMVISIARKYQHLGVPLTDLIQ 113
>gi|427703469|ref|YP_007046691.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427346637|gb|AFY29350.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 356
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
Query: 181 RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-CEP 239
RSM P + + ++ Y++ + LL+H + + L ++++ ++L++ + LK R G +P
Sbjct: 38 RSM--PPVDGDLVRSYLRDIGRVPLLSHEQEITLGRQVQELMALEELREELKMRAGGTDP 95
Query: 240 SMEQLAASLRISRPE-LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S ++LAA+ + RPE L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 96 SQQELAAAAGL-RPEVLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 152
>gi|299472557|emb|CBN79859.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 835
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 210 EVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKL 269
E V L ++I+ GL L+ + RL+ G PS E+ A++L +++ EL L A+E +
Sbjct: 245 EEVVLGRQIQRGLQLERVRDRLETTHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHM 304
Query: 270 VMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +N+RLV+S+A+ Y G DL+Q
Sbjct: 305 ISANLRLVVSMARGYRGRGLAFPDLIQ 331
>gi|67925121|ref|ZP_00518496.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853040|gb|EAM48424.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 374
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRPELQSILMECS 263
LL E V L+++++ L +++ K RLKE L PS + A +L + + + L +
Sbjct: 75 LLNAEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGR 134
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 135 IAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 167
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L K+++ L + K L E+ G EP+ + + + +S
Sbjct: 11 VRTYLREIGRVPLLTHEQEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAGLSL 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
ELQ + + A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 VELQQAIEQGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|428204839|ref|YP_007100465.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428012958|gb|AFY91074.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 324
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA-ASLRIS 251
++ Y++ + LLTH + + K+++ ++L K L ++LG EPS+++ A AS ++
Sbjct: 15 IRIYLREIGRVPLLTHEQEILFGKQVQRSIALQLVKDSLTKQLGREPSLDEWAKASGKLD 74
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L + + A+ K+V +N+RLV+SIA++Y ++ DL+Q
Sbjct: 75 NTQLTQAIADGESAKRKIVEANLRLVVSIAKKYTKRNLELLDLIQ 119
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 64/104 (61%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G + +LLT E L +I+ + L++ K RL+ L EP++ + A ++ +S
Sbjct: 260 LRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSC 319
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
LQS L + +R+KL+ +N+R+V+ IA++Y G ++ DL+Q
Sbjct: 320 QVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQ 363
>gi|443316147|ref|ZP_21045603.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784247|gb|ELR94131.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 318
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH + + K++K + + + L E LG EPS A +
Sbjct: 10 IQAYLKSIGRVPLLTHEQEINYGKQVKQMMVVLALREDLMEPLGAEPSWAAWAEETGLDV 69
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
LQ+ + A+ K++ +N+RLV+SIA++Y + D+ DLVQ
Sbjct: 70 ETLQAQVAAGEAAKSKMIEANLRLVVSIAKKYTDRNLDLLDLVQ 113
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 62/101 (61%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL E V L+++++ + L K L+ LG E S EQ A + ++ EL
Sbjct: 54 YLQEIGRVPLLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFEL 113
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ S A++K++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 114 KRQVLAGSRAKKKMIEANLRLVVSVAKKYQNRGLELLDLVQ 154
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT E + +K I+ ++L+ K L ++L EP++ + A + +IS
Sbjct: 11 IRVYLKEIGRIPLLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKISE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
LQ + + A+ ++V +N+RLV+SIA++Y D+ DL+Q
Sbjct: 71 KNLQIKITQGEKAKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQ 114
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL+ AE V L+++I+ +S +D + +L ++L PS+++ +L
Sbjct: 56 EDTVGAFFKEMARYPLLSAAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALE 115
Query: 250 ISR-PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + L + A+ +++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 116 FPQVRQFEIWLYQLRAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 163
>gi|427706144|ref|YP_007048521.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358649|gb|AFY41371.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 316
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
S +SP+++ + Y++ + LLT + + ++++ ++++ K +L ++L EP +
Sbjct: 2 SSLSPDMV----RVYLREIGQFPLLTSDQEITYGRQVQQMIAIEGQKKQLSQQLHREPKL 57
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LA + S E+ IL A++K+V +N+RLV+SIA++Y ++ DL+Q
Sbjct: 58 AELADFVNKSETEVTQILQLGQRAKQKMVTANLRLVVSIAKKYQRRNLELLDLIQ 112
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 173 QQNGSKQLRSM-ISPELI--QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
Q+ K L S+ I P+ + ++ ++ Y++ + LL E + L++KI L+L++ +
Sbjct: 94 QEASDKTLASIKIGPKGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLNLEEIAI 153
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289
+ + G PS ++ AA + + + LM A+EK+V SN+RLV+SIA++Y N G
Sbjct: 154 QFESENGHYPSKKEWAALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGL 213
Query: 290 DMADLVQ 296
DL+Q
Sbjct: 214 SFQDLIQ 220
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 58/102 (56%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L++ I+ +++ + + +E G P+ +LA +L ++ +
Sbjct: 57 AFFKEMARYPLLKPDEEVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQ 116
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 117 LEQRLHRSQVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 158
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 64/104 (61%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G + +LLT E L +I+ + L++ K RL+ L EP++ + A ++ +S
Sbjct: 249 LRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSC 308
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
LQS L + +R+KL+ +N+R+V+ IA++Y G ++ DL+Q
Sbjct: 309 QVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQ 352
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 60/104 (57%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ ++ + K L ++LG EP++++ + L I +
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQ 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L L + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 KALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL E+L +P + A +++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQ 138
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 139 LPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|416404726|ref|ZP_11687748.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357261487|gb|EHJ10751.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 328
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 60/104 (57%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ ++ + K L ++LG EP++++ + L I +
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQ 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L L + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 KALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT + +L +I+ L L++ K L+ + G EP+M + A ++
Sbjct: 259 LRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNC 318
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
LQS L + +REKL+ +N+R+V+ +A+ Y G + DL+Q
Sbjct: 319 RLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQ 362
>gi|449019011|dbj|BAM82413.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 649
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ Y++ + ++LT E V LS++I L + ++ L L P+ ++LA L +
Sbjct: 326 LRWYLRMIGRVDMLTPEEEVSLSRQISRLLHWERKRIELHGALDRAPTDDELAEHLGVDP 385
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ L E A++++V +N+RLV+SIA+RY G + DL+Q
Sbjct: 386 ERFRRNLAEARRAKDRMVAANLRLVVSIAKRYMRKGLPLEDLIQ 429
>gi|390440883|ref|ZP_10229079.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
gi|389835810|emb|CCI33205.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
Length = 328
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 61/111 (54%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y+ + LLTH + + K+++ +SL + K L ++LG EP A
Sbjct: 13 PTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S+ +S EL L A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 DSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC-----EPSMEQL 244
++ ++ Y++ + LL E + L++KI L ++ + RL + LGC E + E
Sbjct: 102 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLCQELGCTAEELERNPEPW 161
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A L ++ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 162 AKELGMTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 213
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL E+L +P + A +++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRERLSEQLERDPHDSEWAEAVQ 138
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 139 LPLPAFRYRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + D + L LG S Q+A L ++ +
Sbjct: 69 AFFKEMARYPLLKPDEEVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQ 128
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 129 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|324999213|ref|ZP_08120325.1| RNA polymerase sigma factor SigB [Pseudonocardia sp. P1]
Length = 380
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT AE V L+K+I+ G+ H+L + E ++E L R +L
Sbjct: 81 YLNGIGRTALLTAAEEVDLAKRIEAGI-FAQHRL---DTATAEGTLESLDPQYR---RDL 133
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ + +LA+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 134 RAVVRDGALAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 174
>gi|359459297|ref|ZP_09247860.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL H + V K+++ +L + K L++ L EP+ ++ A ++S +L
Sbjct: 14 YLREISRFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQQEWAEKAQVSVAQL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q L A K+V SN+RLV+SIA++Y+ + DL+Q
Sbjct: 74 QKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQ 114
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
+++ + + K + LL E V L+ ++K + + + L E+L PS E+ A ++
Sbjct: 60 LEDNVGAFFKEMARYPLLNTDEEVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAI 119
Query: 249 RISRP-ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+S EL+ L +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 120 GLSSTRELEKFLYRGKVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L D K L ++L EPS+ + AA + S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E++ + + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 TEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|434396665|ref|YP_007130669.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428267762|gb|AFZ33703.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 327
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ ++L K +L+ +LG E S+++ A + +S
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNLSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 AELDRAIKQGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|359458359|ref|ZP_09246922.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL H E + K+++ ++L D K L+ L EP++ + A +S +L
Sbjct: 14 YLREIGRFPLLNHEEEIIFGKQVQRFIALQDLKQDLQADLDREPTLTEWADKAELSISQL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q L A K+V SN+RLV+SIA++Y+ + DL+Q
Sbjct: 74 QKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQ 114
>gi|62701715|gb|AAX92788.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
Length = 368
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%)
Query: 200 VVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSIL 259
+ LLT E V S+ I+ L L+ + L E G +P+ Q A + + L+ L
Sbjct: 258 MTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRL 317
Query: 260 MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQVIF 299
+ ++V SNVRLV+SIA+ ++ G ++ DL+QV
Sbjct: 318 DHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQVFI 357
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ + L + K L ++LG E S+E+ + ++
Sbjct: 20 VRTYLREIGRVPLLTREQEIIFGKQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGLAE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ ++E A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 TELKKTVLEGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|254415890|ref|ZP_05029647.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177317|gb|EDX72324.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 352
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 62/111 (55%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + K+++ + L + K L E L EP+M++ A
Sbjct: 38 PTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMPLLEAKDALAETLEREPTMQEWA 97
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + L+ I+ + + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 98 DHVDLEESALKKIINQGTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 148
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 63/107 (58%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L ++L +P + A +++
Sbjct: 78 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSQQLDRDPKDSEWAEAVQ 137
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P+ + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 138 VPLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 184
>gi|427735339|ref|YP_007054883.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370380|gb|AFY54336.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 339
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 60/101 (59%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y + ++ LLT E + L+KK++ +SL K L ++L +P++++ + +++ EL
Sbjct: 35 YFQDIICIPLLTSEEEINLAKKVQQRMSLLAIKEELSKKLQRQPTLQEWSDKAQLNDTEL 94
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ A++K++ +N+RLV++IA++Y D DL+Q
Sbjct: 95 LEQIDRGQRAKQKMIAANLRLVVTIAKKYQKRNLDFLDLIQ 135
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + L L EP + + A ++
Sbjct: 75 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREELIYHLDREPQVSEWANAVD 134
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P+ + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 135 MELPKFKRRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 181
>gi|126697159|ref|YP_001092045.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126544202|gb|ABO18444.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 344
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 64/104 (61%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ +L + E G +PS+++L+ L +S
Sbjct: 37 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEISELTGDKPSIDELSTKLNLST 96
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 97 SVIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 140
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ +SL D K L ++L EPS+ + A ++ S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E++ + + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 TEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ +SL D K L ++L EPS+ + A ++ S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E++ + + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 TEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|158336372|ref|YP_001517546.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158306613|gb|ABW28230.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL H + V K+++ +L + K L++ L EP+ ++ A ++S +L
Sbjct: 14 YLREISRFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQKEWAEKAQVSVAQL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q L A K+V SN+RLV+SIA++Y+ + DL+Q
Sbjct: 74 QKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQ 114
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 176 GSKQLRSM-ISPELI--QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLK 232
G+K L S+ + P+ + ++ ++ Y++ + LL E + L++KI L L++ +
Sbjct: 104 GAKALASIKVGPKGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLELEEKAAEFE 163
Query: 233 ERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMA 292
G P ++ AA + + + LM A+EK+V+SN+RLV+SIA++Y N G
Sbjct: 164 ADKGHFPDTKEWAAIFDMPLIKFRRRLMLGRRAKEKMVLSNLRLVVSIAKKYMNRGLSFQ 223
Query: 293 DLVQ 296
DL+Q
Sbjct: 224 DLIQ 227
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 62/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E+L +P + A +++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREKLSEQLDRDPKDSEWAEAVQ 138
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 139 LPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|159037062|ref|YP_001536315.1| RNA polymerase sigma factor SigB [Salinispora arenicola CNS-205]
gi|157915897|gb|ABV97324.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 328
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ G+ +LLT A+ V LS++I+ GL + KL C P ++A+LR
Sbjct: 31 VRAYLYGIGKTKLLTAAQEVELSRRIEAGL-FAEAKL-----AACTP----VSATLR--- 77
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ + +E A++ L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 78 ADLELVAVEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 121
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L D K L ++L EP M + A ++ S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVYGKQVQQMMTLIDAKEVLAKKLHREPDMSEWADVVQQSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E+Q + + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 TEVQQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|123969371|ref|YP_001010229.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199481|gb|ABM71122.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 344
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 65/104 (62%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ +L + E G +PS+++L+A L ++
Sbjct: 37 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERIELEIIELTGEKPSIDELSAKLNLTT 96
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 97 STIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 140
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 59/101 (58%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
+ K + LL E V L+ +I+ +++ + +L + LG PS +LA ++ ++ +L
Sbjct: 100 FFKEMARYPLLKPDEEVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQL 159
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ L +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 160 EHQLHRSRVAKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQ 200
>gi|356514352|ref|XP_003525870.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 360
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ ++ G +++LLT + +L +I+ L L++ K L+ + G EP+M + A ++
Sbjct: 128 LRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNC 187
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
LQS L +REKL+ +N+R+V+ +A+ Y G + DL+Q
Sbjct: 188 RLLQSQLHSGIRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQ 231
>gi|319948428|ref|ZP_08022566.1| RNA polymerase sigma factor SigB [Dietzia cinnamea P4]
gi|319437910|gb|EFV92892.1| RNA polymerase sigma factor SigB [Dietzia cinnamea P4]
Length = 322
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V LSK+I+ GL H L K+RLG P+ + +L
Sbjct: 29 YLNGIGKTALLNAEDEVELSKRIEAGLYAK-HLLETKKRLG--PA----------KKADL 75
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 76 KTIVAEGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|428205040|ref|YP_007100666.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428013159|gb|AFY91275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 335
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 56/92 (60%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LL+H + + K+++ ++L K L ++L EP++++ A + +S LQ L+
Sbjct: 39 LLSHEQEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQ 98
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A++K++ +N+RLV+++A++Y D DL+Q
Sbjct: 99 AKQKMIEANLRLVVAVAKKYQKRNLDFLDLIQ 130
>gi|357021635|ref|ZP_09083866.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
gi|356479383|gb|EHI12520.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
Length = 319
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL AE V L+K+I+ GL H L+ K+RLG + +L
Sbjct: 26 YLNGIGKTALLDAAEEVELAKRIEAGLYAQ-HLLKTKKRLGQN------------RKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++I+ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 EAIVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|254526733|ref|ZP_05138785.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538157|gb|EEE40610.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 333
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 64/104 (61%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ +L L E G +PS+++L+ L +S
Sbjct: 26 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERAELELIELAGDKPSIDELSTKLNLST 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 86 SIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 129
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH + + KK+K +L + K L ++LG EP+ + A + ++
Sbjct: 11 VRTYLKEIGRVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATASCLTD 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+S + A+ K+V +N+RLV+++A++Y ++ DL+Q
Sbjct: 71 SQLKSSIAVGESAKRKMVEANLRLVVAVAKKYIKRNLELLDLIQ 114
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LL E + L+K I+ + + +L LG P+ ++A + + +L L +C
Sbjct: 84 LLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRT 143
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ +++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 144 AKRRMISSNLRLVVSIAKRYLNRGVPFLDLIQ 175
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E EP+ ++ A ++
Sbjct: 76 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVD 135
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ PE + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 136 MRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 182
>gi|218200736|gb|EEC83163.1| hypothetical protein OsI_28384 [Oryza sativa Indica Group]
Length = 537
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 222 LSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281
+ +++ +L+ + G EP++ + A ++ +S ELQS + REK+ SN RLV+ +A
Sbjct: 255 MKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVA 314
Query: 282 QRYDNMGADMADLVQ 296
++Y+ G D+ DLVQ
Sbjct: 315 RKYEGYGLDIQDLVQ 329
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 13/122 (10%)
Query: 188 LIQNRLK----GYVKGVVSEELLTHAEVVRLSKKIKTG---------LSLDDHKLRLKER 234
LI++RL Y++ V + +LLT E V LS+KI+ L L+ + L+
Sbjct: 251 LIKHRLSDPICSYLRDVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRD 310
Query: 235 LGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADL 294
+G EP+ + + ++ +++ + + E A++KLV SN+RLV+SI + Y G + DL
Sbjct: 311 MGREPTRSEWSLAVGMNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDL 370
Query: 295 VQ 296
+Q
Sbjct: 371 IQ 372
>gi|33864638|ref|NP_896197.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33632161|emb|CAE06617.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 332
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 64/104 (61%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L ++++ + ++ + L+ R G +PS ++LA + ++
Sbjct: 25 VRSYLRDIGRVPLLTHEQEITLGRQVQDLMDIEAMQTELESRDGDKPSRDKLAKASGLTP 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 85 LQLKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 128
>gi|443311220|ref|ZP_21040852.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778750|gb|ELR89011.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 383
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 58/102 (56%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+K+++ + +D+ + L +L + + AA+ ++ +
Sbjct: 75 AFFKEMARYPLLKADEEVELAKRVQFLVEVDNLQESLSSKLNRRATQAETAAAFGLTERQ 134
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 135 LEQKLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVQFLDLIQ 176
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E EP+ ++ A ++
Sbjct: 61 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVD 120
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ PE + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 121 MRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 167
>gi|75812393|ref|YP_320012.1| sigma-70 [Anabaena variabilis ATCC 29413]
gi|75705149|gb|ABA24823.1| Sigma-70 [Anabaena variabilis ATCC 29413]
Length = 314
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 61/101 (60%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + +LT + + L++++K + HK L+E+L + +++QLAA + S E+
Sbjct: 11 YLREISKYPMLTPEQEITLARQVKQMTVVQQHKQVLEEQLHQQLNIQQLAADMGKSETEV 70
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
IL A+EK++ +N+RLV++IA++Y + DLVQ
Sbjct: 71 FQILRLGQKAKEKMIAANLRLVVAIAKKYRWSQLEFLDLVQ 111
>gi|427714236|ref|YP_007062860.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427378365|gb|AFY62317.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 325
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 60/104 (57%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + L K+++ + L D + L LG EP++ +LA +
Sbjct: 18 VRTYLHEIGRVPLLTHEQEIILGKQVQQLMRLRDLEETLTTELGREPTLAELATVAEMPP 77
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L L + A++K++ +N+RLV+S+A++Y ++ DL+Q
Sbjct: 78 EKLNLALRKGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 121
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP-SMEQLAASLRIS 251
++ Y++ + LLTH E + +K+I+ +SL++ K L E EP S + A + +S
Sbjct: 10 VRAYLREIGRVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLS 69
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ + E A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 70 IRELEKAIKEGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ +LK +L EP + A ++
Sbjct: 72 EDSIRLYLQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQLDREPKDSEWALAVE 131
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P+ + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 132 MPLPQFRHRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 178
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E EP+ ++ A ++
Sbjct: 76 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVD 135
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ PE + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 136 MRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 182
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + L E+L EP+ + A +
Sbjct: 70 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRADLAEQLEREPTDAEWAQKVD 129
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 130 MALPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 176
>gi|125602683|gb|EAZ42008.1| hypothetical protein OsJ_26557 [Oryza sativa Japonica Group]
Length = 497
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 222 LSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281
+ +++ +L+ + G EP++ + A ++ +S ELQS + REK+ SN RLV+ +A
Sbjct: 215 MKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVA 274
Query: 282 QRYDNMGADMADLVQ 296
++Y+ G D+ DLVQ
Sbjct: 275 RKYEGYGLDIQDLVQ 289
>gi|302866072|ref|YP_003834709.1| sigma-70 family RNA polymerase [Micromonospora aurantiaca ATCC
27029]
gi|315502628|ref|YP_004081515.1| RpoD subfamily RNA polymerase sigma-70 subunit [Micromonospora sp.
L5]
gi|302568931|gb|ADL45133.1| RNA polymerase sigma factor, sigma-70 family [Micromonospora
aurantiaca ATCC 27029]
gi|315409247|gb|ADU07364.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Micromonospora
sp. L5]
Length = 328
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-CEPSMEQLAASLRIS 251
++ Y+ G+ +LLT A+ V LSK+I+ GL + E+L C P +L A L +
Sbjct: 31 VRAYLNGIGRTKLLTAAQEVELSKRIEAGLFAE-------EKLATCTPVSAELHADLAL- 82
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I E A++ L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 83 ------IAAEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 121
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 62/111 (55%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + ++ Y+ + LLTH + + K+++ ++L + K L +L EPS+ + A
Sbjct: 13 PTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWA 72
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++S EL + + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 73 NHVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E EP + A ++
Sbjct: 77 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVE 136
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 137 MALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 183
>gi|434395228|ref|YP_007130175.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267069|gb|AFZ33015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 328
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ +S+ D K L ++L EP++++ A+ +++S
Sbjct: 21 VRTYLREIGRVPLLTREQEIIYGKQVQQMMSVLDAKEALAKKLHREPTVQEWASHVKMSE 80
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 81 ADLHDTVRRGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 124
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + + ++L EP+ A ++
Sbjct: 93 EDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVD 152
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L + A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 153 MPLPAFRRRLYQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 199
>gi|332708935|ref|ZP_08428906.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352477|gb|EGJ32046.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651118|gb|AEE81160.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 333
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 60/104 (57%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ ++L K L + L EP+ E+ A+ + S
Sbjct: 26 VRTYLHEIGRVPLLTHEQEIVYGKQVQQMMALLGEKATLAQELEREPTTEEWASYVNKSE 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ + + + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 86 AELKKAIDQGTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 129
>gi|330466466|ref|YP_004404209.1| RNA polymerase sigma factor SigB [Verrucosispora maris AB-18-032]
gi|328809437|gb|AEB43609.1| RNA polymerase sigma factor SigB [Verrucosispora maris AB-18-032]
Length = 335
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ G+ +LLT A+ V L+K+I+ GL + KL C P QL A L +
Sbjct: 39 VRAYLNGIGRTKLLTAAQEVELAKRIEAGL-FAEEKLTT-----CTPVSAQLQADLTL-- 90
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I E A+ L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 91 -----IAQEGQAAKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 129
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 58/104 (55%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + K+++ +L + K L LG +P+ + A + +S
Sbjct: 12 VRAYLREIGRVPLLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAGLSE 71
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
ELQ + A+ +V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 72 TELQRTIHAGERAKRMMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 160 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVE 219
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 220 MPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 266
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + +LLT E V LS +I+ L L++ K L+ +G ++ + + ++ + +
Sbjct: 264 VRAYLRDIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRAVGMEQ 323
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ L + A++K+V SN+RLV+SIA+ Y G + DL+Q
Sbjct: 324 NAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQ 367
>gi|555686|gb|AAA85644.1| sigma factor MysB [Mycobacterium smegmatis str. MC2 155]
Length = 319
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L K+RLG + +L
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLDTKKRLG------------EARKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q+++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 QAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 60/104 (57%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + L K+++ ++L + K +L E LG + + + + + IS
Sbjct: 20 VRTYLQEIGRVPLLTHEEEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAGISE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL L A+ K++ +N+RLV+++A++Y + DL+Q
Sbjct: 80 TELVHQLRHGERAKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQ 123
>gi|427738916|ref|YP_007058460.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427373957|gb|AFY57913.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 378
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 56/102 (54%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + + +E+LG P +A + I + +
Sbjct: 70 AFFKEMARYPLLKPDEEVELARRVRILEEVRQAQAAAQEKLGYFPDKAAIAKEMGIVQKQ 129
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 130 LEHRLYQGKVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 171
>gi|414079421|ref|YP_007000845.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
gi|413972700|gb|AFW96788.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
Length = 327
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+ + + K+++ ++L + K L++ + EPS+ + AA + S
Sbjct: 20 VRTYLREIGRVPLLSREQEIIYGKQVQQMMALLEAKEALRKEIDHEPSLSEWAARVNQSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL ++++ A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 TELNHLMVQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 140 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVE 199
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 200 MPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 246
>gi|118472772|ref|YP_887083.1| RNA polymerase sigma factor SigB [Mycobacterium smegmatis str. MC2
155]
gi|399987098|ref|YP_006567447.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|441207679|ref|ZP_20973619.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|118174059|gb|ABK74955.1| sigma factor SigB [Mycobacterium smegmatis str. MC2 155]
gi|399231659|gb|AFP39152.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|440627862|gb|ELQ89667.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 319
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L K+RLG + +L
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLDTKKRLG------------EARKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q+++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 QAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 222 LSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281
L L+ + L ER G EP+ Q AA+ +++ L+ L +L ++K++ SN+RLV+SI
Sbjct: 5 LKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIX 64
Query: 282 QRYDNMGADMADLVQ 296
+ Y G ++ DLVQ
Sbjct: 65 KNYQGAGMNLQDLVQ 79
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 140 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVE 199
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 200 MPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 246
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E EP + A ++
Sbjct: 77 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVD 136
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ P + L A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 137 MALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 183
>gi|329934715|ref|ZP_08284756.1| RNA polymerase principal sigma factor HrdA [Streptomyces
griseoaurantiacus M045]
gi|329305537|gb|EGG49393.1| RNA polymerase principal sigma factor HrdA [Streptomyces
griseoaurantiacus M045]
Length = 363
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + E+LG P ++ A
Sbjct: 67 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLGSTPDLDSRLAL----- 114
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L ++++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 115 -DLDTLVVRGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 157
>gi|86608620|ref|YP_477382.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557162|gb|ABD02119.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 319
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
+Q+ + ++K + LLT E +RL+ +++ ++L L++R E S+E + L
Sbjct: 7 LQDAVGRFLKTIGRYSLLTAEEELRLAHQVQRMVTL------LEQRQPHE-SVEGWSQRL 59
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I ELQ IL + A++++V N+RLV+SIA+RY N G DL+Q
Sbjct: 60 GIPLAELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQ 107
>gi|157414236|ref|YP_001485102.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388811|gb|ABV51516.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 344
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ +L E G +PS+++L+ L +S
Sbjct: 37 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERAELEFIELTGDKPSIDELSTKLNLST 96
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 97 SIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 140
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTG--LSLDDHKLRLKERLGCEPSMEQLAASLRI 250
++ Y++ + +LLT +E V LS+KI+ L L+ K L+ +G EPS+ + + ++ +
Sbjct: 276 VRAYLRDIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRAVGM 335
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + E +++K+V SN+RLV+SI + Y G + DL+Q
Sbjct: 336 EQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQ 381
>gi|428308709|ref|YP_007119686.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428250321|gb|AFZ16280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 327
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 58/104 (55%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ + L D K L E+L EP+ ++ ++
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIVYGKQVQQMMLLMDAKAALAEKLQREPTTKEWTMHVKHDE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L I+ + + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 ATLNKIVSQGTWAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ +SL D K L ++L EPS+ + A + S
Sbjct: 45 VRTYLREIGRVPLLTREQEIVYGKQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQSE 104
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E++ + + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 105 TEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 148
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L +++ S++LLT + +L +I+ L L+D K L+ + G EP+M + A ++
Sbjct: 255 LNKFLQSPESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNC 314
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ L + +REKL+ +N+RLV IA+ Y G + DL+Q
Sbjct: 315 RKMKAQLRCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQ 358
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+ + A +
Sbjct: 83 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELID 142
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P+ + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 143 MPLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 189
>gi|186683480|ref|YP_001866676.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186465932|gb|ACC81733.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 60/104 (57%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + +K+++ ++L K +L +L +P+ ++ ++ I
Sbjct: 25 VRAYLREIGRIPLLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINIGE 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L L + A++K++ +N+RLV+SIA++Y D DL+Q
Sbjct: 85 KSLLQQLHQGQKAKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQ 128
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ ++L + + L+E L E + E+ A + +++
Sbjct: 20 VRTYLREIGRVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDREATREEWAEAAQLTP 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ L A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 KQLQRDLQIGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 123
>gi|397614537|gb|EJK62861.1| hypothetical protein THAOC_16512 [Thalassiosira oceanica]
Length = 466
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + + ELL E + L+++I+ + + + L+ L P+ ++ AAS+ PE+
Sbjct: 153 YMKTMGNHELLQKNEEIILAREIQILIGWEGKRDELEAELVRPPTYQEWAASID---PEM 209
Query: 256 QSILMECSL-----AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I ++ + A+ L SN+RLV+SIA+RY N G +M DL Q
Sbjct: 210 TVIQLKRQIRRSLRAKAALTESNLRLVISIAKRYQNRGLNMQDLCQ 255
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
G + + LLT E V S+ I+ L L+ + L E G +P+ Q A + +
Sbjct: 228 GSLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKT 287
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + ++V SNVRLV+SIA+ ++ G D DL+Q
Sbjct: 288 LRKRLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQ 329
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L D K L ++L EPS+E+ A +
Sbjct: 20 VRTYLREIGRVPLLTREQEIIFGKQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQPE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E++ + + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 TEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|158334481|ref|YP_001515653.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158304722|gb|ABW26339.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LL H + + K+++ + L + K +L E+L EP++ + A I
Sbjct: 11 ITAYLQEIGRFPLLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQADIPV 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ L A K+V SN+RLV+SIA++Y+ + DL+Q
Sbjct: 71 SQLQKELKLGQTANRKMVESNLRLVVSIAKKYNKAKLEFLDLIQ 114
>gi|158316157|ref|YP_001508665.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158111562|gb|ABW13759.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 400
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 19/104 (18%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRIS---R 252
Y+K + LLT E V L+K+I+ GL + E+LAA R S R
Sbjct: 107 YLKAIGRVRLLTAEEEVDLAKRIEAGLF----------------ASEKLAAIRRTSPRLR 150
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++I + +A+ KLV +N+RLV+SIA+RY G + DL+Q
Sbjct: 151 RDLEAIEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQ 194
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 147 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVE 206
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 207 MPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 253
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
G + + LLT E V S+ I+ L L+ + L E G +P+ Q A + +
Sbjct: 228 GSLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKT 287
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + ++V SNVRLV+SIA+ ++ G D DL+Q
Sbjct: 288 LRKRLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQ 329
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL-----AAS 247
++ Y++ + LL E + L++KI L L+ + + +R+G E++ A
Sbjct: 91 IRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLWAEE 150
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++S PE + L A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 151 VKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 199
>gi|407983270|ref|ZP_11163927.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
gi|407375163|gb|EKF24122.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
Length = 319
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L ++RLG + R EL
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLETRKRLGEK------------RRREL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 EEVVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|72383045|ref|YP_292400.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002895|gb|AAZ58697.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 335
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ +SL++ + L+ LG +P + A IS
Sbjct: 28 VRSYLRDIGRVPLLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGISP 87
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 88 IQLKKKLKSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 63/115 (54%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
+M + + ++ ++ Y++ + LLTH E + K++ L K L +P++
Sbjct: 4 AMKTAQTPKDLVRTYLREIGRVPLLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTL 63
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ A ++ +L+ + + +A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 64 DEWAERAKLEPQDLEEAIEKGEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 118
>gi|312196071|ref|YP_004016132.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311227407|gb|ADP80262.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 393
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + LLT AE V L+K+I+ GL E+LG +L +LR+ +L
Sbjct: 100 YLKEIGKVPLLTAAEEVDLAKRIEAGLFA-------AEKLG---GGRRLTVALRV---DL 146
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + +A+ KLV +N+RLV+SIA+RY G DL+Q
Sbjct: 147 EAVARDGDVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 187
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 124 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVE 183
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 184 MPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 230
>gi|409358553|ref|ZP_11236916.1| RNA polymerase sigma factor SigB [Dietzia alimentaria 72]
Length = 322
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V LSK+I+ GL H L K+R+G + + +L
Sbjct: 29 YLNGIGKTALLKAEDEVELSKRIEAGLYAQ-HILATKKRIGP------------VRKSDL 75
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 76 KAVVAEGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+++ A
Sbjct: 107 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLAD 166
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 167 MPLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 213
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
G + + LLT E V S+ I+ L L+ + L E G +P+ Q A + +
Sbjct: 252 GSLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERT 311
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + ++V SNVRLV+SIA+ ++ G ++ DL+Q
Sbjct: 312 LRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 353
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+++ A
Sbjct: 107 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLAD 166
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 167 MPLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 213
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
G + + LLT E V S+ I+ L L+ + L E G +P+ Q A + +
Sbjct: 253 GSLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERT 312
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + ++V SNVRLV+SIA+ ++ G ++ DL+Q
Sbjct: 313 LRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 354
>gi|33862185|ref|NP_893746.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634403|emb|CAE20088.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 333
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + ++ ++ + E +PS E+LA L +S
Sbjct: 26 VRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAEIEIMELTDNKPSPEELAEKLNLST 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 86 SQIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 129
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + R G P ++ AA +
Sbjct: 149 EDSIRVYLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVE 208
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+S + + LM A+ K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 209 MSLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 255
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 58/102 (56%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+++++ + + + L+ LG + Q+A L ++ +
Sbjct: 81 AFFKEMARYPLLKPDEEVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQ 140
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 141 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|428204671|ref|YP_007083260.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427982103|gb|AFY79703.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 318
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 66/104 (63%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + +K+++ + L++ K LK++LG EP+ + AA+ ++
Sbjct: 11 VRAYLREIGRVPLLTHEEEIHYAKRVQRLVVLENLKESLKQKLGKEPTDSEWAAAAELTE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL++ + A+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 AELRNCIAAGDAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|145224529|ref|YP_001135207.1| RNA polymerase sigma factor SigB [Mycobacterium gilvum PYR-GCK]
gi|145217015|gb|ABP46419.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
Length = 329
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L ++RLG E LAA +R
Sbjct: 36 YLNGIGKTALLTAADEVELAKRIEAGLYAQ-HLLATRKRLG-ENRKRDLAAVVR------ 87
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 88 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|427737532|ref|YP_007057076.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427372573|gb|AFY56529.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 330
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 55/92 (59%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LL+ E + ++++K + L K L E+ EPS+ A ++ ++ +LQ L +
Sbjct: 35 LLSREEEIFFAQRVKQLMELLQVKEDLTEKSSSEPSLSTWANAVEMTPTQLQETLDNGEI 94
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
AR+K++ +N+RLV++IA++Y + + DL+Q
Sbjct: 95 ARQKMIEANLRLVVAIAKKYQHRNLEFVDLIQ 126
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL-----AAS 247
++ Y++ + LL E + L++KI L L+ + + +R+G E++ A
Sbjct: 90 IRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLWAEE 149
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++S PE + L A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 150 VKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 198
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
G + + LLT E V S+ I+ L L+ + L E G +P+ Q A + +
Sbjct: 253 GSLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERT 312
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + ++V SNVRLV+SIA+ ++ G ++ DL+Q
Sbjct: 313 LRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 354
>gi|271962349|ref|YP_003336545.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
gi|270505524|gb|ACZ83802.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
Length = 324
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 17/129 (13%)
Query: 170 SILQQNGSKQLRSMISPEL--IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDH 227
S L Q G + L +++ E+ + ++ Y++ + LLT + V L+++++ GL
Sbjct: 5 STLTQTGDEVL-TLLKAEMGATADPVRDYLRQIARIPLLTAGQEVELARRVEAGLFA--- 60
Query: 228 KLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNM 287
+ERLG E L A+LR EL+ + + A+++ V +N+RLV+SIA+R+
Sbjct: 61 ----RERLGAE----GLPAALR---AELECVADDGRRAKDRFVEANLRLVVSIAKRHAGR 109
Query: 288 GADMADLVQ 296
G + DL+Q
Sbjct: 110 GVPLLDLIQ 118
>gi|260436019|ref|ZP_05789989.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260413893|gb|EEX07189.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 335
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH + + L ++++ + L+ + L+ + G +PS + LA + +S
Sbjct: 28 VRSYLRDIGRVPLLTHEQEITLGRQVQELMDLESLEAELESKAGEKPSRDVLAKASGLSS 87
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 88 MQLKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|443329722|ref|YP_007378793.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682348|gb|AFZ61112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 332
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 58/101 (57%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LLTH + + +K+++ + + K L E+L EP+ ++ A +++ L
Sbjct: 28 YLHKIGRIPLLTHEQEIFFAKQVQQMMVMLTAKEELSEKLQREPTRQEWADKMQLEEDML 87
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L + +A++K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 88 LQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNIEFLDLIQ 128
>gi|315444860|ref|YP_004077739.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium gilvum
Spyr1]
gi|315263163|gb|ADT99904.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 319
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L ++RLG E LAA +R
Sbjct: 26 YLNGIGKTALLTAADEVELAKRIEAGLYAQ-HLLATRKRLG-ENRKRDLAAVVR------ 77
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 78 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|449018705|dbj|BAM82107.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 459
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
YV+ + + ++ EV RLS+ + +L + L+ LG EP+ + AA++ E
Sbjct: 108 AYVREICKLDRISDEEVARLSRATQDYCALLKQRDELRNTLGREPTNAEWAAAVDAPEEE 167
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRY 284
+Q + ARE+LV +N+RLV++IA RY
Sbjct: 168 IQQRVERGRRARERLVAANLRLVLAIANRY 197
>gi|358458850|ref|ZP_09169055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357077812|gb|EHI87266.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 422
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL A+ V LSK+++ GL +HKL E LG + R +L
Sbjct: 129 YLREIGRVPLLNAAQEVELSKRVEAGL-FAEHKLATAEELGTD------------LRRDL 175
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ + A+++LV +N+RLV+S+A++Y G + DLVQ
Sbjct: 176 KQLVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 216
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
G + + LLT E V S+ I+ L L+ + L E G +P+ Q A + +
Sbjct: 253 GSLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERT 312
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + ++V SNVRLV+SIA+ ++ G ++ DL+Q
Sbjct: 313 LRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 354
>gi|428213655|ref|YP_007086799.1| sigma-70 family RNA polymerase sigma factor [Oscillatoria acuminata
PCC 6304]
gi|428002036|gb|AFY82879.1| RNA polymerase sigma factor, sigma-70 family [Oscillatoria
acuminata PCC 6304]
Length = 619
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 181 RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240
R IS +L+Q Y++ + LL + + L+++++ + L+ K L +L EP+
Sbjct: 178 RQPISTDLVQ----CYLREIGRIPLLKREDEISLAQQVQRWIQLEQGKQSLNSKLHREPT 233
Query: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ A + +S +L+ + + A++ LV SN+RLV+SIA+ Y + G ++ DL+Q
Sbjct: 234 RSEWANATGLSLSQLEDAISKGRKAQKSLVYSNLRLVVSIAKIYQHRGLELLDLIQ 289
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE---PSMEQLAA 246
++ ++ Y++ + LL E + L++KI L L+D + L E+ C+ ++E A
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAV 138
Query: 247 SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + ++ L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 139 EMDMPLDKFKNRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E V L+ +++ + D + L+E+ G + ++A ++ +
Sbjct: 88 AFFKEMARYPLLKPDEEVELAHRVRFLEEVKDLQAALEEQFGHSATKGEIANKFDLNEKQ 147
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L++ L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 148 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 189
>gi|386840029|ref|YP_006245087.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100330|gb|AEY89214.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793323|gb|AGF63372.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 374
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + E+LG P ++ A
Sbjct: 78 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLGTTPDLDSELAQ----- 125
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 126 -DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 168
>gi|302551232|ref|ZP_07303574.1| RNA polymerase sigma factor RpoS [Streptomyces viridochromogenes
DSM 40736]
gi|302468850|gb|EFL31943.1| RNA polymerase sigma factor RpoS [Streptomyces viridochromogenes
DSM 40736]
Length = 438
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + KLRL L QLA
Sbjct: 142 FRQYLREIGRVPLLTAAEEVELARRVEAGL-FAEEKLRLAPDLDS-----QLAV------ 189
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 190 -DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 232
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ +L E L +P + A ++
Sbjct: 61 EDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAETLQRDPQDAEWAEAVD 120
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P+ Q L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 121 MPLPKFQRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 167
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + + + K + LL E + L++++K ++ ++ E L P+ ++A +
Sbjct: 76 LADDAVGAFFKEMARYPLLKADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANA 135
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L S + Q L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 136 LHCSEADFQHRLQYARSAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 184
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
G + + +LLT E V LS I+ L L+ + L E G +P+ Q AA+
Sbjct: 241 GSLWKMTGRKLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGGQPTFPQWAAAAGTDENT 300
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + ++V SNVRLV+SIA+ ++ G ++ DL+Q
Sbjct: 301 LRKRLDHGIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQ 342
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT+ + + L ++++ +SL+ + L+ G +PS E LA IS
Sbjct: 21 VRSYLRDIGRVPLLTNEQEITLGRQVQELISLEKLERELESTNGKKPSKEDLAIDAGISV 80
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 81 RELSKRLKRGVRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 124
>gi|296171822|ref|ZP_06852936.1| RNA polymerase principal sigma factor SigB [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295893958|gb|EFG73726.1| RNA polymerase principal sigma factor SigB [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 329
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A V L+K+I+ GL + H L ++RLG R +L
Sbjct: 36 YLNGIGKTALLNAAGEVELAKRIEAGLYAE-HLLETRKRLGEN------------RRRDL 82
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 83 EAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|269929031|ref|YP_003321352.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
gi|269788388|gb|ACZ40530.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
Length = 359
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y + V +LLTH E + S+ ++ GL ++RL E EL
Sbjct: 73 YFRDVGGHQLLTHREEIEYSRAVRAGLEA-------RKRLEAGEDSE-----------EL 114
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ AREKL+ N+RLV+SIA++Y G + DL+Q
Sbjct: 115 HQIIERAKAAREKLIRHNLRLVVSIAKKYRTSGLPLIDLIQ 155
>gi|302560773|ref|ZP_07313115.1| RNA polymerase sigma (70) factor RpoD [Streptomyces griseoflavus
Tu4000]
gi|302478391|gb|EFL41484.1| RNA polymerase sigma (70) factor RpoD [Streptomyces griseoflavus
Tu4000]
Length = 404
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 172 LQQNGSKQLRSMISPELI---QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHK 228
L+ GS + S I PE + + Y++ + LLT AE V L+++++ GL + K
Sbjct: 84 LETAGSAEPASRIRPETGGPSSDLFRQYLREIGRIPLLTAAEEVELARRVEAGL-FAEEK 142
Query: 229 LRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG 288
LRL L +++ L +++ +A+ +L+ +N+RLV+S+A+RY G
Sbjct: 143 LRLTPDLDSGLALD------------LDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRG 190
Query: 289 ADMADLVQ 296
M DLVQ
Sbjct: 191 LTMLDLVQ 198
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L + K L ++L EPS+ + AA + S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVFGKQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 TDVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ AA +
Sbjct: 153 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEWAALVD 212
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 213 MPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 259
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 187 ELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAA 246
E + ++ Y++ + +LL E + LSK++ + L+ + +E G P+ + A
Sbjct: 272 EAKDDTIRSYLREIGRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQ 331
Query: 247 SLRISRP--ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ + + A+E++V +N+RLV+SIA+RY N G + DL+Q
Sbjct: 332 GCGYGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQ 383
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + G P+ ++ AA +
Sbjct: 133 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVE 192
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 193 MPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 239
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 58/104 (55%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + K+++ + + K +L ++L EPS + A + ++
Sbjct: 26 VRTYLHEIGRVPLLTQEEEIHYGKQVQQMMKQLEEKDKLTKKLEHEPSKTEWANEVELTE 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL IL A++K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 86 DELDRILDCGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 129
>gi|108799144|ref|YP_639341.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MCS]
gi|119868259|ref|YP_938211.1| RNA polymerase sigma factor SigB [Mycobacterium sp. KMS]
gi|126434752|ref|YP_001070443.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JLS]
gi|108769563|gb|ABG08285.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694348|gb|ABL91421.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
gi|126234552|gb|ABN97952.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 319
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L K+RLG E LAA +R
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLNTKKRLG-ESRKRDLAAVVR------ 77
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 78 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|220907004|ref|YP_002482315.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7425]
gi|219863615|gb|ACL43954.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 327
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
SM+S +++ + Y+ + LLTH + + L K+++ + L + + +L L P+
Sbjct: 13 SMVSTDMV----RTYLHEIGRVPLLTHEQEIVLGKQVQQLMELLEAREKLTTSLDRSPTA 68
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E+ A +S +L + + A++K++ +N+RLV+S+A++Y ++ DL+Q
Sbjct: 69 EEWAEQANLSVADLNTAVRRGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 123
>gi|433603602|ref|YP_007035971.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
gi|407881455|emb|CCH29098.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
Length = 330
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT AE V L+K+I+ G+ H L G P AS R R EL
Sbjct: 37 YLNGIGKTALLTAAEEVELAKRIEAGV-FAQHMLET----GSGP------ASTR--REEL 83
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ + +A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 84 RALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 124
>gi|169630111|ref|YP_001703760.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus ATCC
19977]
gi|365870954|ref|ZP_09410495.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397679875|ref|YP_006521410.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
gi|414582578|ref|ZP_11439718.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|418247832|ref|ZP_12874218.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|418421133|ref|ZP_12994309.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709733|ref|ZP_14237201.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|420881197|ref|ZP_15344564.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|420884840|ref|ZP_15348200.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|420889538|ref|ZP_15352886.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|420897176|ref|ZP_15360515.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|420899659|ref|ZP_15362991.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|420905543|ref|ZP_15368861.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|420910637|ref|ZP_15373949.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|420917089|ref|ZP_15380393.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|420922254|ref|ZP_15385551.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|420927916|ref|ZP_15391198.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|420932132|ref|ZP_15395407.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|420938383|ref|ZP_15401652.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|420942390|ref|ZP_15405647.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|420946950|ref|ZP_15410200.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|420952649|ref|ZP_15415893.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|420956818|ref|ZP_15420055.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|420961864|ref|ZP_15425089.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|420967525|ref|ZP_15430729.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|420972741|ref|ZP_15435934.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|420978256|ref|ZP_15441434.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|420983641|ref|ZP_15446808.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|420992777|ref|ZP_15455924.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|420998629|ref|ZP_15461766.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|421003066|ref|ZP_15466190.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|421007918|ref|ZP_15471029.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|421013609|ref|ZP_15476690.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|421018559|ref|ZP_15481617.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|421024676|ref|ZP_15487720.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|421029721|ref|ZP_15492753.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|421035126|ref|ZP_15498146.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|421050031|ref|ZP_15513025.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|169242078|emb|CAM63106.1| RNA polymerase sigma factor [Mycobacterium abscessus]
gi|353452325|gb|EHC00719.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|363994757|gb|EHM15975.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363997600|gb|EHM18811.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|382943614|gb|EIC67928.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|392080603|gb|EIU06429.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|392086106|gb|EIU11931.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|392087286|gb|EIU13108.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|392096488|gb|EIU22283.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|392101006|gb|EIU26797.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|392103447|gb|EIU29233.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|392112631|gb|EIU38400.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|392117730|gb|EIU43498.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|392121229|gb|EIU46995.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|392132090|gb|EIU57836.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|392135149|gb|EIU60890.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|392136891|gb|EIU62628.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|392143898|gb|EIU69623.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|392149817|gb|EIU75531.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|392153980|gb|EIU79686.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|392157961|gb|EIU83658.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|392165633|gb|EIU91319.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|392166530|gb|EIU92215.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|392168637|gb|EIU94315.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|392185561|gb|EIV11210.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|392186441|gb|EIV12088.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|392194524|gb|EIV20144.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|392199371|gb|EIV24981.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|392201957|gb|EIV27555.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|392208434|gb|EIV34008.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|392211473|gb|EIV37039.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|392224473|gb|EIV49993.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|392225858|gb|EIV51373.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|392238634|gb|EIV64127.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898]
gi|392249329|gb|EIV74804.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|392250032|gb|EIV75506.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|392253717|gb|EIV79185.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|395458140|gb|AFN63803.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
Length = 323
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT + V L+K+I+ GL H L K+RLG + +L
Sbjct: 30 YLNGIGKTALLTAEDEVELAKRIEAGLYAQ-HLLDTKKRLG------------EARKKDL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ E + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 77 AVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|419716788|ref|ZP_14244183.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|420864424|ref|ZP_15327814.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|420869215|ref|ZP_15332597.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873659|ref|ZP_15337036.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|420987323|ref|ZP_15450479.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|421039706|ref|ZP_15502715.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|421044014|ref|ZP_15507015.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|382940349|gb|EIC64673.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|392068685|gb|EIT94532.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|392071399|gb|EIT97245.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|392072687|gb|EIT98528.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|392181602|gb|EIV07253.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|392224798|gb|EIV50317.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|392237866|gb|EIV63360.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
Length = 323
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT + V L+K+I+ GL H L K+RLG + +L
Sbjct: 30 YLNGIGKTALLTAEDEVELAKRIEAGLYAQ-HLLDTKKRLG------------EARKKDL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ E + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 77 AVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|238063483|ref|ZP_04608192.1| sigma-70 region 2 domain-containing protein [Micromonospora sp.
ATCC 39149]
gi|237885294|gb|EEP74122.1| sigma-70 region 2 domain-containing protein [Micromonospora sp.
ATCC 39149]
Length = 334
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-CEPSMEQLAASLRIS 251
++ Y+ G+ +LLT + V L+K+I+ GL + E+L C P L
Sbjct: 37 VRAYLNGIGRTKLLTAEQEVELAKRIEAGLFAE-------EKLATCTPVSTVL------- 82
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R +L+ I+ E A++ L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 83 RADLEIIVAEGRTAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 127
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT+ + + K+++ ++L K L+++L E S+++ + S +IS
Sbjct: 21 VRSYLHEIGRVPLLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISE 80
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
PEL +L A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 81 PELNRLLKLGQRAKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 124
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 209 AEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREK 268
+E ++ S+ I+ + L+ + L E+ G +P+ Q A + + L+ L +EK
Sbjct: 278 SEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEK 337
Query: 269 LVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ SN+RLV+S+A+ Y G + DLVQ
Sbjct: 338 MIKSNIRLVISVAKNYQGSGMSLQDLVQ 365
>gi|166368031|ref|YP_001660304.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166090404|dbj|BAG05112.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 377
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL+ E + L+ +K + ++ + +L+E L P+ + A++L++
Sbjct: 68 AFFKEMARYPLLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ AA +
Sbjct: 192 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEWAALVD 251
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 252 MPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 298
>gi|307152083|ref|YP_003887467.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982311|gb|ADN14192.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 418
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 22/101 (21%)
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECS-------------- 263
IK +SL + + +L +LG PS+E+LA + I+ EL+ L E
Sbjct: 110 IKNFVSLIEKRDQLTSQLGHRPSLERLADAAEITVFELKKTLYEGKRHWAELANLEVQEL 169
Query: 264 --------LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+E+++ +N+RLV+S+A+RY N G ++ DL+Q
Sbjct: 170 ERVQKAGIYAKEQMIKANLRLVVSVAKRYQNRGLELLDLIQ 210
>gi|336177646|ref|YP_004583021.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334858626|gb|AEH09100.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 392
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 20/105 (19%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP-- 253
Y+K + LLT E V L+K+I+ GL + E+LAA+ R + P
Sbjct: 98 YLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------ASEKLAAATRKTSPQM 141
Query: 254 --ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q
Sbjct: 142 RRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 186
>gi|219111033|ref|XP_002177268.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411803|gb|EEC51731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 324
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 204 ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECS 263
ELLT E L KI+ + + L +L P++E+ AA+ + + ++M
Sbjct: 10 ELLTADEEYSLGMKIQFMIKCELVHEGLSSKLMRLPTIEEWAAACGGTATDFVEMVMTSR 69
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A++++V SN+RLV+SIA++Y N+G + DLVQ
Sbjct: 70 EAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQ 102
>gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|464687|sp|Q03065.1|RPSB_ANASP RecName: Full=RNA polymerase sigma-B factor
gi|424021|pir||B47017 probable transcription initiation factor sigma SigB - Anabaena sp
gi|142112|gb|AAA22046.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134700|dbj|BAB77258.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
Length = 332
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 59/101 (58%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL+H + + +++++ + + K L E+L EP++++ A +++ L
Sbjct: 28 YLHKIGRVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVL 87
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L + +A++K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 88 LQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQ 128
>gi|363420377|ref|ZP_09308469.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
gi|359735619|gb|EHK84576.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
Length = 320
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L K+RL AA R +L
Sbjct: 27 YLNGIGRTALLTAADEVELAKRIEAGLYAK-HLLETKKRLS--------AAKKR----DL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 74 AIIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 114
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLTH E + +K+++ + L+ K +L+E+ E S + A + ++
Sbjct: 11 VRSYLKEIGRVPLLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAANVTV 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ + +A+ K++ +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 AKLRKDVDAGEVAKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|257064907|ref|YP_003144579.1| sigma-70 family RNA polymerase sigma factor [Slackia
heliotrinireducens DSM 20476]
gi|256792560|gb|ACV23230.1| RNA polymerase sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 314
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 17/113 (15%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL-AA 246
++ + ++ Y++ + +LLT AE V L+KK +TGL+ E ++ Q+
Sbjct: 12 VVGDSIRMYLRDIGKVDLLTPAEEVELAKKYQTGLA-------------AEAALAQMNEG 58
Query: 247 SLRISRPELQSILM---ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S+ + R E + +L A++KLV +N+RLV+SIA++Y G + DLVQ
Sbjct: 59 SVEVDRRECRKLLRVQRAGQEAKDKLVAANLRLVVSIAKKYRGRGLPLLDLVQ 111
>gi|311742667|ref|ZP_07716476.1| DNA-directed RNA polymerase sigma subunit RpoD [Aeromicrobium
marinum DSM 15272]
gi|311314295|gb|EFQ84203.1| DNA-directed RNA polymerase sigma subunit RpoD [Aeromicrobium
marinum DSM 15272]
Length = 464
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 19/107 (17%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRIS- 251
+K Y+K + LLT E V L+K+I+ GL + E+LA RIS
Sbjct: 168 VKDYLKQIGKVSLLTAGEEVELAKRIEAGLFAE----------------EKLAKGGRISP 211
Query: 252 --RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R EL I+++ A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 212 KMREELDWIVVDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 258
>gi|417749572|ref|ZP_12397964.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
gi|336458794|gb|EGO37751.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length = 319
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ + LL A V L+K+I+ GL + H L ++RLG + +L
Sbjct: 26 YLNGIGKKALLNAAGEVELAKRIEAGLYAE-HLLETRKRLGEN------------RKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 EAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + RL ++L EP + A +
Sbjct: 62 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLSDQLEREPQDSEWATEVN 121
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 122 MPLQAFRHRLYVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 168
>gi|383647771|ref|ZP_09958177.1| RNA polymerase sigma factor [Streptomyces chartreusis NRRL 12338]
Length = 430
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + KLRL L QLA
Sbjct: 134 FRQYLREIGRIPLLTAAEEVELARRVEAGL-FAEEKLRLAPDLDS-----QLAL------ 181
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 182 -DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 224
>gi|146739110|gb|ABQ42602.1| chloroplast RNA-polymerase sigma factor precursor [Heterosigma
akashiwo]
Length = 404
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-S 251
+K YVK + + ++LT E + L+++IK G+ ++ + L++ LG +P+ E+ + + S
Sbjct: 75 MKEYVKDLRTVDMLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVNFVGLKS 134
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ L S ++ ++ +N+RLV+S A+ Y G DLVQ
Sbjct: 135 IDDIRKNLKRASKSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQ 179
>gi|86605925|ref|YP_474688.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
gi|86554467|gb|ABC99425.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
Length = 318
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 7/108 (6%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
+Q+ + ++K + LLT E + L+ +++ ++L L++R E S+E + L
Sbjct: 7 LQDAVGRFLKIIGRYSLLTAEEELHLAHQVQRMMAL------LEQRRQHE-SLEDWSRRL 59
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I ELQ IL + A++++V N+RLV+SIA+RY N G DL+Q
Sbjct: 60 GIPLEELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQ 107
>gi|374992526|ref|YP_004968021.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
gi|297163178|gb|ADI12890.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
Length = 336
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LLT + V L+K+I+ GL + +L L+ER G + R SR
Sbjct: 39 VKDYLKLIARVRLLTAEQEVDLAKRIEAGLYAE--RL-LRERPGLD----------RHSR 85
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL ++ + A+ LV +N+RLV+S+A+RY G DL+Q
Sbjct: 86 GELGALAEDGHRAKTHLVEANLRLVVSVAKRYTGRGLAFLDLIQ 129
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ ++L + K L ++L EPS+ + A ++ S
Sbjct: 20 VRTYLREIGRVPLLTREQEIVFGKQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQSE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 TDVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|255076341|ref|XP_002501845.1| predicted protein [Micromonas sp. RCC299]
gi|226517109|gb|ACO63103.1| predicted protein [Micromonas sp. RCC299]
Length = 595
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC-EPSMEQLAASLRIS 251
+K Y+K + + LLT AE V L+K+I+ + L+ RL+E G EP+ A I+
Sbjct: 272 MKTYLKDIGTVSLLTGAEEVELAKRIQDLMYLNSVCERLEEENGGKEPTRFMWAIECNIT 331
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ L E A+ ++ +N+RLV+SIA+RY N DL+Q
Sbjct: 332 EQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSMSFQDLIQ 376
>gi|254432638|ref|ZP_05046341.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627091|gb|EDY39650.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 335
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-CEPSMEQLAASLRIS 251
++ Y++ + LLTH + + L ++++ ++L++ + L R G PS +LA + +S
Sbjct: 22 VRSYLRDIGRVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLS 81
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 82 PAVLKKRLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 126
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + G P+ ++ A+ +
Sbjct: 150 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVE 209
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 210 MPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 256
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRPE 254
+ K + LLT E V L++ +K ++ + +L +L PS +LA ++ + + +
Sbjct: 55 FFKEMARYPLLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQ 114
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L + L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 115 LDNRLYKGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 156
>gi|408825995|ref|ZP_11210885.1| RNA polymerase sigma factor [Streptomyces somaliensis DSM 40738]
Length = 363
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 17/122 (13%)
Query: 175 NGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKER 234
+G+ + +P+L + Y+ + LLT AE V L+++I+ GL + E+
Sbjct: 54 HGAADRTAAPTPDLFRQ----YLGEIGRIPLLTAAEEVELARRIEAGLFAE-------EK 102
Query: 235 LGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADL 294
L P ++ A +L ++++ A+ +L+ +N+RLV+SIA+RY G + DL
Sbjct: 103 LARTPDLDSRLAG------DLDTLVVRGRTAKRRLIEANLRLVVSIAKRYAGRGLTLPDL 156
Query: 295 VQ 296
VQ
Sbjct: 157 VQ 158
>gi|357510769|ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 557
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 19/142 (13%)
Query: 155 QRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRL 214
QRRL +KK+ K L N + +L + SPE +++LL+ E +L
Sbjct: 226 QRRLRLEKKL----KEGLDGNHALRL-FLWSPE--------------TKQLLSIEEESQL 266
Query: 215 SKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNV 274
+I+ L + K++L+ G EP++ + A + +S +LQ L + +++KL+ +N+
Sbjct: 267 IAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRDLQKRLHCGNRSKDKLIHANL 326
Query: 275 RLVMSIAQRYDNMGADMADLVQ 296
RLV+ IA+ Y G + DL+Q
Sbjct: 327 RLVVHIAKYYQGRGLSLQDLLQ 348
>gi|404420807|ref|ZP_11002540.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659675|gb|EJZ14305.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 319
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L K+RLG + +L
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLNTKKRLGEN------------RKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 ATVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|325673633|ref|ZP_08153324.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
gi|325555654|gb|EGD25325.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
Length = 448
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ Y+K + +LLT E V LS+ I+ GL H L P+ + R
Sbjct: 150 LQWYLKRIRRVDLLTADEEVELSRSIEAGLYAS-HLLEAYPSRTTRPAPAE--------R 200
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + AR +++ +N+RLV+S AQ Y+ G DM DLVQ
Sbjct: 201 RDLRQIVQDGRSARTRMIEANLRLVVSTAQNYEGRGLDMLDLVQ 244
>gi|318041016|ref|ZP_07972972.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 323
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE-PSMEQLAASLRISRPE 254
+++ + LLT E + L + ++ G L + LK R G E PS+E A+S+ +S +
Sbjct: 18 HLRAIGRVPLLTADEEISLGRAVQNGRLLLEAAEELKLRAGGEAPSLEAWASSVNLSPRQ 77
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
LQ L A E++V +N+RLV+S+A+R + D+ DL+Q
Sbjct: 78 LQRQLRLAERASEQMVTANLRLVVSLARRISHRRLDLDDLIQ 119
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME----QLA 245
++ ++ Y++ + LL E + L++KI L L+ + L +G + E A
Sbjct: 97 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWA 156
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + P + L E A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 157 VKVDMPLPRFRRRLYEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 207
>gi|443627733|ref|ZP_21112109.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
gi|443338746|gb|ELS53012.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
Length = 430
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+LG P ++ +LA
Sbjct: 134 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLGNTPDLDSELAL----- 181
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 182 --DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 224
>gi|294629207|ref|ZP_06707767.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. e14]
gi|292832540|gb|EFF90889.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. e14]
Length = 386
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL +E+L P ++ A
Sbjct: 90 FRQYLREIGRIPLLTAAEEVELARRVEAGLFA-------EEKLSSTPDLDSRLAG----- 137
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 138 -DLDRLVVSGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 180
>gi|124022691|ref|YP_001016998.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962977|gb|ABM77733.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 320
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ +SL+ + L+ + G S ++LA + +S
Sbjct: 13 VRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSE 72
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 73 LQLKKKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 116
>gi|386846220|ref|YP_006264233.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
gi|359833724|gb|AEV82165.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
Length = 333
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL A V LSK I+ GL E +EQ ISR EL
Sbjct: 42 YLHEISRTPLLDAAREVELSKAIEAGLY-------------AEHLLEQGEERRGISREEL 88
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ E S A++ + +N+RLV+SIA+RY G M DL+Q
Sbjct: 89 ERLVTEGSRAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQ 129
>gi|345851793|ref|ZP_08804757.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
gi|345636744|gb|EGX58287.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
Length = 442
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+LG P ++ +LA
Sbjct: 146 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLGGTPDLDSELAL----- 193
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 194 --DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 236
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 134 DSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRL 193
D P +H + C +S L K ++ K+ + S+ RS S + ++
Sbjct: 36 DYPDCLSHSLLGGRCQFISC----LGRVKLTMATAKTTQTELTSRNPRSGASMDAVRT-- 89
Query: 194 KGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP 253
Y+ + LLT E + KK++ +SL + + L + L +P+ + +A +S
Sbjct: 90 --YLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSES 147
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E+ I+ A++K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 148 EMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 190
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ AA +
Sbjct: 132 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVE 191
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 192 MPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 238
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ AA +
Sbjct: 136 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVE 195
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 196 MPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 242
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + L+++L P + A ++
Sbjct: 71 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRESLQQQLDRTPQDAEWANAVN 130
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 131 MTLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 177
>gi|41408924|ref|NP_961760.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397283|gb|AAS05143.1| SigB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 332
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A V L+K+I+ GL + H L ++RLG + +L
Sbjct: 39 YLNGIGKTALLNAAGEVELAKRIEAGLYAE-HLLETRKRLGEN------------RKRDL 85
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 86 EAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 126
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E L +P + A ++
Sbjct: 80 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLCEELERDPKDNEWANAVG 139
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 140 MPLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-CEPSMEQLAASLRIS 251
++ Y++ + LLTH + + L ++++ ++L++ + L R G PS +LA + +S
Sbjct: 6 VRSYLRDIGRVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLS 65
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 66 PAVLKKRLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 110
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ AA +
Sbjct: 139 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVE 198
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 199 MPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 245
>gi|365862000|ref|ZP_09401757.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
gi|364008482|gb|EHM29465.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
Length = 363
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + ERL P ++ A
Sbjct: 67 FRQYLREIGRITLLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG----- 114
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 115 -DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 157
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 10/148 (6%)
Query: 159 NSKKKILSQNKSILQQ---NGSKQLRSMIS-----PELI--QNRLKGYVKGVVSEELLTH 208
NSK+K L+ SI + NGS + I P+ I ++ ++ Y++ + LL
Sbjct: 44 NSKQKPLNDEGSIENKDEFNGSDEEAKAIGNVKLGPKGIYTEDSIRVYLQEIGRIRLLRP 103
Query: 209 AEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREK 268
E + L++KI L L++ + + G PS+ + A + + + L+ A+EK
Sbjct: 104 DEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDMPLSKFRRRLLLGRRAKEK 163
Query: 269 LVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 164 MVQSNLRLVVSIAKKYMNRGLSFQDLIQ 191
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 58/104 (55%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + KK++ +SL + + L + L +P+ + +A +S
Sbjct: 25 VRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSE 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E+ I+ A++K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 85 SEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 128
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + L + L EP + A +++
Sbjct: 76 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREHLCDHLHREPYDAEWADAVK 135
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+S + + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 136 MSVGQFRHRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 182
>gi|254821657|ref|ZP_05226658.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|379748152|ref|YP_005338973.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|379755443|ref|YP_005344115.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-02]
gi|379762989|ref|YP_005349386.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-64]
gi|387876818|ref|YP_006307122.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MOTT36Y]
gi|406031681|ref|YP_006730572.1| RNA polymerase sigma factor sigB [Mycobacterium indicus pranii MTCC
9506]
gi|443306610|ref|ZP_21036398.1| RNA polymerase sigma factor SigB [Mycobacterium sp. H4Y]
gi|378800516|gb|AFC44652.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|378805659|gb|AFC49794.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-02]
gi|378810931|gb|AFC55065.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-64]
gi|386790276|gb|AFJ36395.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MOTT36Y]
gi|405130228|gb|AFS15483.1| RNA polymerase sigma factor sigB [Mycobacterium indicus pranii MTCC
9506]
gi|442768174|gb|ELR86168.1| RNA polymerase sigma factor SigB [Mycobacterium sp. H4Y]
Length = 319
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A V L+K+I+ GL + H L ++RLG + +L
Sbjct: 26 YLNGIGKTALLNAAGEVELAKRIEAGLYAE-HLLETRKRLGEN------------RKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 EAVVRDGKAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|118463509|ref|YP_882780.1| RNA polymerase sigma factor SigB [Mycobacterium avium 104]
gi|254776043|ref|ZP_05217559.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp. avium
ATCC 25291]
gi|440778274|ref|ZP_20957040.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis S5]
gi|118164796|gb|ABK65693.1| sigma factor SigB [Mycobacterium avium 104]
gi|436721377|gb|ELP45512.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 319
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A V L+K+I+ GL + H L ++RLG + +L
Sbjct: 26 YLNGIGKTALLNAAGEVELAKRIEAGLYAE-HLLETRKRLGEN------------RKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 EAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|443321959|ref|ZP_21050996.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442788351|gb|ELR98047.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 353
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRPELQSILMECS 263
LL E + L+ +IK + +++ +L+ L P+ +L +L + S +L ++L +
Sbjct: 55 LLNPEEELTLAYQIKFLIKVEEQTQQLERELRRSPTKAELVTALALNSVGQLDNLLYQGR 114
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 115 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 147
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 56/102 (54%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
+ K + LL E + L+++++ +++ K L + LG P + +A + +S +
Sbjct: 84 AFFKEMARYPLLKPDEEIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQ 143
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ L A+ +++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 144 VRQNLQLGRAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 185
>gi|425469001|ref|ZP_18847970.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
gi|389884193|emb|CCI35494.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
Length = 377
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL E + L+ +K + ++ + +L+E L P+ + A +L+
Sbjct: 63 EDTVGAFFKEMARYPLLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQ 122
Query: 250 ISRP-ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 123 LDNERQLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|425454900|ref|ZP_18834625.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
gi|389804301|emb|CCI16819.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
Length = 377
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL+ E + L+ +K + ++ + +L+E L P+ + A +L
Sbjct: 63 EDTVGAFFKEMARYPLLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALE 122
Query: 250 ISRP-ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 123 LDNERQLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|422301798|ref|ZP_16389163.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
gi|389789168|emb|CCI14818.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
Length = 377
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL E + L+ +K + ++ + +L+E L P+ + A +L+
Sbjct: 63 EDTVGAFFKEMARYPLLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQ 122
Query: 250 ISRP-ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 123 LDNERQLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ L +RL EP +++ A +
Sbjct: 60 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIYDDLFDRLEREPQLQEWALEVD 119
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 120 MPLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 166
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LL E + L+++IK ++ + + L LG P +LA + +S EL + +
Sbjct: 33 LLKANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGII 92
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A++K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 93 AKQKMISSNLRLVVSIAKRYLNRGVPFLDLIQ 124
>gi|182438860|ref|YP_001826579.1| RNA polymerase principal sigma factor [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326779516|ref|ZP_08238781.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
gi|178467376|dbj|BAG21896.1| putative RNA polymerase principal sigma factor [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326659849|gb|EGE44695.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
Length = 363
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + ERL P ++ A
Sbjct: 67 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG----- 114
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 115 -DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 157
>gi|443311966|ref|ZP_21041588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778041|gb|ELR88312.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 327
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 60/104 (57%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ +SL + K L ++L EP+ ++ A + I+
Sbjct: 20 VRTYLREIGRVPLLTREQEIIYGKQVQQMMSLLEAKEALAKQLHREPTSDEWATQVDIAA 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 AELPETIKRGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|120403441|ref|YP_953270.1| RNA polymerase sigma factor SigB [Mycobacterium vanbaalenii PYR-1]
gi|119956259|gb|ABM13264.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
vanbaalenii PYR-1]
Length = 329
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L ++RLG E LAA +R
Sbjct: 36 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLDTRKRLG-ENRKRDLAAVVR------ 87
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 88 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|296393377|ref|YP_003658261.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus
rotundus DSM 44985]
gi|296180524|gb|ADG97430.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus
rotundus DSM 44985]
Length = 377
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K I+ GL + H L+ + L + R EL
Sbjct: 84 YLNGIGRTALLTAADEVELAKSIEAGLYAE-HLLKTSDNLTPQ------------RRREL 130
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 131 KTVARDGQAARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQ 171
>gi|428205323|ref|YP_007089676.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
gi|428007244|gb|AFY85807.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
Length = 416
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 22/101 (21%)
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRIS----RP------------------EL 255
IKT ++L + + RL LG PS+E+ AAS IS +P EL
Sbjct: 108 IKTYITLIEAQERLTSELGHRPSLERWAASAGISVMELKPALAVGKRRWAEIAKITVEEL 167
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ I + A+E ++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 168 EQIQNDGIHAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|425447335|ref|ZP_18827325.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
gi|389732113|emb|CCI03895.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
Length = 377
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL+ E + L+ +K + ++ + +L+E L P+ + A +L
Sbjct: 63 EDTVGAFFKEMARYPLLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALE 122
Query: 250 ISRP-ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 123 LDNERQLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa]
Length = 376
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL+ E + L+ +K + ++ + +L+E L P+ + A +L
Sbjct: 63 EDTVGAFFKEMARYPLLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALE 122
Query: 250 ISRP-ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 123 LDNERQLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|383819225|ref|ZP_09974501.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
gi|383337196|gb|EID15577.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
Length = 319
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L ++RLG + EL
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLETRKRLGEN------------RKREL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 AEVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 181 RSMISPELIQNR--------LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLK 232
+S++ P ++ R ++ Y++ + LL+H + + L ++++ +SL+ + L+
Sbjct: 8 KSLVKPAVVPARQLPADVDLVRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESELE 67
Query: 233 ERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMA 292
+ G S ++LA + +S +L+ L A+E++V +N+RLV+S+A++Y ++
Sbjct: 68 GQTGEPASRKELAKAAGLSELQLKKKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELL 127
Query: 293 DLVQ 296
DL+Q
Sbjct: 128 DLIQ 131
>gi|392416004|ref|YP_006452609.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
gi|390615780|gb|AFM16930.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
Length = 319
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L+ ++RLG + +L
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAR-HLLQTRKRLGDN------------RKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 AAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|425464726|ref|ZP_18844036.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
gi|389833185|emb|CCI22530.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
Length = 377
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL E + L+ +K + ++ + +L+E L P+ + A +L++
Sbjct: 68 AFFKEMARYPLLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWANALQLDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|425437461|ref|ZP_18817876.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440756281|ref|ZP_20935482.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
gi|169883528|gb|ACA97859.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
gi|389677539|emb|CCH93515.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440173503|gb|ELP52961.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
Length = 377
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL+ E + L+ +K + ++ + +L+E L P+ + A +L
Sbjct: 63 EDTVGAFFKEMARYPLLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALE 122
Query: 250 ISRP-ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 123 LDNERQLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|145594010|ref|YP_001158307.1| RNA polymerase sigma factor SigB [Salinispora tropica CNB-440]
gi|145303347|gb|ABP53929.1| sigma-70 region 2 domain protein [Salinispora tropica CNB-440]
Length = 332
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++G+ +LLT A+ V LS++I+ GL KL C P L R
Sbjct: 35 VRAYLQGIGRTKLLTAAQEVELSRRIEAGL-FAATKLAT-----CTPVSVAL-------R 81
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ + E A++ L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 82 ADLELVAAEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 125
>gi|294812504|ref|ZP_06771147.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|294325103|gb|EFG06746.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
Length = 436
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 16/106 (15%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME--QLAASLRI 250
+ Y++ + LLT AE V L+++++ GL + E+L P + +LAA
Sbjct: 139 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAA---- 187
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 188 ---DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 230
>gi|404446700|ref|ZP_11011803.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
gi|403650063|gb|EJZ05350.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
Length = 319
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L ++RLG E LAA +R
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLDTRKRLG-ENRKRDLAAVVR------ 77
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 78 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|357588815|ref|ZP_09127481.1| RNA polymerase sigma factor SigB [Corynebacterium nuruki S6-4]
Length = 421
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V LS++I+ GL + H L E+L R + +L
Sbjct: 128 YLNGIGRTPLLTAADEVELSQRIEAGLYAE-HLLDSGEKL------------TRARKRDL 174
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 175 KVLVREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 215
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 59/104 (56%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + KK++ ++L + + L + L +P+ E+ +A +S
Sbjct: 25 VRTYLHEIGRVPLLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSE 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E+ I+ A++K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 85 SEMTDIINRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 128
>gi|302342714|ref|YP_003807243.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfarculus
baarsii DSM 2075]
gi|301639327|gb|ADK84649.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfarculus
baarsii DSM 2075]
Length = 590
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 36/140 (25%)
Query: 187 ELIQNRLK--GYVKGVVS----EELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240
E+I+ RL+ + +GV++ E L ++ +L+KK++ + D+ + C
Sbjct: 250 EIIRVRLRTIDHCEGVITSAMMETGLPKGDIGKLAKKVRANCACDEDMAK------CRCD 303
Query: 241 MEQLAA---SLRISRPELQSILMECSL---------------------AREKLVMSNVRL 276
++L A SLR++R ++ + MEC + A+++LV +N+RL
Sbjct: 304 GQRLLAVDESLRVARGRIREVEMECKMGAPSLRKILDRVGKGQTLAQDAKQELVEANLRL 363
Query: 277 VMSIAQRYDNMGADMADLVQ 296
V+SIA++Y N G DL+Q
Sbjct: 364 VVSIAKKYTNRGLQFLDLIQ 383
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 58/104 (55%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + K+++ + L + K L + + + ++ AA + ++
Sbjct: 27 VRAYLHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTE 86
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
PEL IL A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 87 PELSRILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 130
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 59/104 (56%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + KK++ ++L + + L + L +P+ E+ +A +S
Sbjct: 27 VRTYLHEIGRVPLLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSE 86
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E+ I+ A++K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 87 SEMTDIINRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 130
>gi|440700623|ref|ZP_20882862.1| RNA polymerase sigma factor RpoD [Streptomyces turgidiscabies Car8]
gi|440276773|gb|ELP64993.1| RNA polymerase sigma factor RpoD [Streptomyces turgidiscabies Car8]
Length = 421
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + KLRL L QLA
Sbjct: 125 FRQYLREIGRIPLLTAAEEVDLARRVEAGL-FAEEKLRLASDLDS-----QLAL------ 172
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 173 -DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 215
>gi|312139424|ref|YP_004006760.1| sigma-70 factor sigb [Rhodococcus equi 103S]
gi|325672687|ref|ZP_08152383.1| RNA polymerase principal sigma factor SigB [Rhodococcus equi ATCC
33707]
gi|311888763|emb|CBH48075.1| sigma-70 factor SigB [Rhodococcus equi 103S]
gi|325556564|gb|EGD26230.1| RNA polymerase principal sigma factor SigB [Rhodococcus equi ATCC
33707]
Length = 322
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+++I+ GL H L K+RL AA R +L
Sbjct: 29 YLNGIGRTALLTAADEVDLARRIEAGLYAA-HVLATKKRL--------TAAKKR----DL 75
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+I+ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 76 ATIVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L ++L EP ++ A +
Sbjct: 67 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLYDKLDREPQDQEWAGEVD 126
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 127 MPLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 173
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 58/104 (55%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + KK++ +SL + + L + L +P+ + +A +S
Sbjct: 25 VRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGLSE 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E+ I+ A++K++ +N+RLV+SIA++Y + DL+Q
Sbjct: 85 SEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 128
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + ++ E +G P+ + + ++
Sbjct: 68 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAIN 127
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ Q L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 128 MEWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQ 174
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ AA +
Sbjct: 129 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVE 188
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 189 MPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 235
>gi|17233195|ref|NP_490285.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17135717|dbj|BAB78263.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 316
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 63/111 (56%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P L + ++ Y++ + LLT + + ++ ++ ++L + + L ++L EP+ +LA
Sbjct: 2 PSLSSDLVRIYLQEIGQFPLLTSDQEITYARLVQQMIALQEQQHELTQKLEREPTTLELA 61
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L + ++ IL A++K++ +N+RLV+SIA++Y + DLVQ
Sbjct: 62 NFLNKTEAQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQ 112
>gi|375142610|ref|YP_005003259.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium
rhodesiae NBB3]
gi|359823231|gb|AEV76044.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
rhodesiae NBB3]
Length = 319
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L ++RLG E LAA +R
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLATRKRLG-ENRKRDLAAVVR------ 77
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 78 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|359771709|ref|ZP_09275155.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
gi|359311145|dbj|GAB17933.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
Length = 329
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+TGL H L ++RL + + +L
Sbjct: 36 YLNGIGRTALLNAEQEVELAKQIETGLYAK-HVLATRKRLSA------------VKKRDL 82
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 83 AQIIREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|254389040|ref|ZP_05004270.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
gi|326441042|ref|ZP_08215776.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|197702757|gb|EDY48569.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
Length = 385
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 16/106 (15%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME--QLAASLRI 250
+ Y++ + LLT AE V L+++++ GL + E+L P + +LAA
Sbjct: 88 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAA---- 136
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 137 ---DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 179
>gi|111023771|ref|YP_706743.1| RNA polymerase sigma factor SigB [Rhodococcus jostii RHA1]
gi|384100772|ref|ZP_10001829.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|397737305|ref|ZP_10503977.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|419965923|ref|ZP_14481858.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|432340395|ref|ZP_19589837.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
gi|110823301|gb|ABG98585.1| sigma factor, sigma 70 type, group 2 (proven non-essential)
[Rhodococcus jostii RHA1]
gi|383841678|gb|EID80955.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|396926744|gb|EJI93981.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|414568597|gb|EKT79355.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|430774588|gb|ELB90174.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
Length = 323
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V LSK+I+ GL H L +RL P+ ++ +L
Sbjct: 30 YLNGIGRTALLTAADEVELSKRIEAGLYAA-HILETGKRL--SPAKKR----------DL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 77 ATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|333991092|ref|YP_004523706.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
gi|333487060|gb|AEF36452.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
Length = 321
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L ++R G + + EL
Sbjct: 28 YLNGIGKTALLNAADEVELAKRIEAGLYAK-HLLETRKRFGEK------------RKREL 74
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 75 ATVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 115
>gi|148823899|ref|YP_001288653.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis F11]
gi|253798208|ref|YP_003031209.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
1435]
gi|308232219|ref|ZP_07415326.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
gi|308369834|ref|ZP_07419229.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu002]
gi|308371106|ref|ZP_07423839.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu003]
gi|308372374|ref|ZP_07428435.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu004]
gi|308373485|ref|ZP_07432499.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu005]
gi|308374669|ref|ZP_07436917.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu006]
gi|308375503|ref|ZP_07444157.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu007]
gi|308377104|ref|ZP_07441142.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu008]
gi|308378072|ref|ZP_07481430.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu009]
gi|308379289|ref|ZP_07485765.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu010]
gi|308380449|ref|ZP_07489983.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu011]
gi|385991992|ref|YP_005910290.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5180]
gi|148722426|gb|ABR07051.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis F11]
gi|253319711|gb|ACT24314.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
1435]
gi|308214646|gb|EFO74045.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
gi|308326293|gb|EFP15144.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu002]
gi|308329821|gb|EFP18672.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu003]
gi|308333464|gb|EFP22315.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu004]
gi|308337459|gb|EFP26310.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu005]
gi|308341132|gb|EFP29983.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu006]
gi|308346083|gb|EFP34934.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu007]
gi|308348958|gb|EFP37809.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu008]
gi|308353656|gb|EFP42507.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu009]
gi|308357503|gb|EFP46354.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu010]
gi|308361457|gb|EFP50308.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu011]
gi|339299185|gb|AEJ51295.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5180]
Length = 345
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A V L+K+I+ GL + H L ++RLG E LAA +R
Sbjct: 52 YLNGIGKTALLNAAGEVELAKRIEAGLYAE-HLLETRKRLG-ENRKRDLAAVVR------ 103
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 104 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 139
>gi|390437727|ref|ZP_10226255.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
gi|389838859|emb|CCI30379.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
Length = 378
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL E + L+ +K + ++ + +L+E L P+ + A +L +
Sbjct: 68 AFFKEMARYPLLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNER 127
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 128 QLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|226366207|ref|YP_002783990.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|424852224|ref|ZP_18276621.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
gi|226244697|dbj|BAH55045.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|254553060|dbj|BAH85842.1| RNA polymerase sigma B factor [Rhodococcus opacus]
gi|356666889|gb|EHI46960.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
Length = 323
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V LSK+I+ GL H L +RL P+ ++ +L
Sbjct: 30 YLNGIGRTALLTAADEVELSKRIEAGLYAA-HILETGKRL--SPAKKR----------DL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 77 ATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+ + A +
Sbjct: 86 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELID 145
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 146 MPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 192
>gi|400536819|ref|ZP_10800353.1| RNA polymerase sigma factor SigB [Mycobacterium colombiense CECT
3035]
gi|400329832|gb|EJO87331.1| RNA polymerase sigma factor SigB [Mycobacterium colombiense CECT
3035]
Length = 319
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A V L+K+I+ GL + H L ++RLG + +L
Sbjct: 26 YLNGIGKTALLNAAGEVELAKRIEAGLYAE-HLLATRKRLGEN------------RKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 EAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 431
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP-E 254
Y++ + LL + + L+K+I+T L+ K +K + G EP+ E+ A + +S E
Sbjct: 117 YLQEIGEISLLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDAEE 176
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMA--DLVQ 296
L+ ++ +LAR++LV +N+R V+++A++Y M+ DL+Q
Sbjct: 177 LRHMVRVGTLARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQ 220
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 168 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVE 227
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 228 MPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 274
>gi|340794551|ref|YP_004760014.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
gi|340534461|gb|AEK36941.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
Length = 397
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V LS++I+ GL + H L E+L R + +L
Sbjct: 104 YLNGIGKTALLTAADEVELSQRIEAGLYAE-HLLETGEKL------------TRARKRDL 150
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 151 KILAREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 191
>gi|291444398|ref|ZP_06583788.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
gi|291347345|gb|EFE74249.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
Length = 395
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + ERL P ++ A
Sbjct: 99 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------ERLTGTPDLDSRLAG----- 146
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 147 -DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 189
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG--CEPSMEQLAASLRI 250
++ Y+K + S LL + V L+K+I+ + L+ + L E G E S Q AA+ +
Sbjct: 203 MRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGVELSESQWAAAAGL 262
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ L+ L + A+ +++ +N+RLV+SIA++Y N DL+Q
Sbjct: 263 NVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQ 308
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + K+++ +SL + K L++ L E ++E+ A +
Sbjct: 24 VRTYLQEIGKVPLLSHEQEIVFGKQVQQMMSLYEVKENLEKNLEREVTLEEWAQKADKTP 83
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E++ I+ + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 84 NEVKKIIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 127
>gi|433647324|ref|YP_007292326.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
gi|433297101|gb|AGB22921.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
Length = 319
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L ++RLG E LAA +R
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAA-HLLETRKRLG-ENRKRDLAAVVR------ 77
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 78 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|218442621|ref|YP_002380941.1| RNA polymerase, sigma 32 subunit, RpoH [Cyanothece sp. PCC 7424]
gi|218174979|gb|ACK73711.1| RNA polymerase, sigma 32 subunit, RpoH [Cyanothece sp. PCC 7424]
Length = 308
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L Y+K ELL ++ + L +KI+ L ++ +++ G + S+ + ++
Sbjct: 11 LDSYLKNFTRYELLNSSQEIDLGQKIQKWQKLKHQFVQFQKKTGKKTSVFDFCSDFQLEE 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E + E A+ +LV N+RLV+++A++Y G DL+Q
Sbjct: 71 AEFYLVYEEGQQAKNQLVQGNLRLVINLAKKYLGRGLSFEDLLQ 114
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G EP ++ AA +
Sbjct: 145 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVE 204
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 205 MPVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 251
>gi|449064777|ref|YP_007431860.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Korea 1168P]
gi|449033285|gb|AGE68712.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Korea 1168P]
Length = 338
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A V L+K+I+ GL + H L ++RLG E LAA +R
Sbjct: 45 YLNGIGKTALLNAAGEVELAKRIEAGLYAE-HLLETRKRLG-ENRKRDLAAVVR------ 96
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 97 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 132
>gi|374608203|ref|ZP_09681002.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
gi|373553735|gb|EHP80322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
Length = 319
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL H L ++RLG E LAA +R
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-HLLATRKRLG-ENRKRDLAAVVR------ 77
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 78 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|425440636|ref|ZP_18820934.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
gi|389718887|emb|CCH97220.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
Length = 377
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL E + L+ +K + ++ + +L+E L P+ + A +L
Sbjct: 63 EDTVGAFFKEMARYPLLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALE 122
Query: 250 ISRP-ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 123 LDNERQLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 177 SKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG 236
SKQL + S L + ++ Y+K + S LL + V L+K+I+ + L+ + L E G
Sbjct: 2 SKQL-TRTSKRLATDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLVEETG 60
Query: 237 --CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADL 294
E + Q A++ ++ L L + A+ +++ +N+RLV+SIA++Y N DL
Sbjct: 61 PGAEVTDYQWASAAGLNVQALHQRLRDGKSAKNEMIQANLRLVVSIAKKYANSNMSFQDL 120
Query: 295 VQ 296
+Q
Sbjct: 121 IQ 122
>gi|291439801|ref|ZP_06579191.1| RNA polymerase sigma factor [Streptomyces ghanaensis ATCC 14672]
gi|291342696|gb|EFE69652.1| RNA polymerase sigma factor [Streptomyces ghanaensis ATCC 14672]
Length = 390
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + KLRL P ++ A
Sbjct: 94 FRQYLREIGRIPLLTAAEEVELARRVEAGL-FAEEKLRLT------PDLDSRLAH----- 141
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 142 -DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 184
>gi|15609847|ref|NP_217226.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Rv]
gi|15842248|ref|NP_337285.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CDC1551]
gi|31793882|ref|NP_856375.1| RNA polymerase sigma factor SigB [Mycobacterium bovis AF2122/97]
gi|121638585|ref|YP_978809.1| RNA polymerase sigma factor SigB [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662551|ref|YP_001284074.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Ra]
gi|224991077|ref|YP_002645766.1| RNA polymerase sigma factor SigB [Mycobacterium bovis BCG str.
Tokyo 172]
gi|254365367|ref|ZP_04981412.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis str.
Haarlem]
gi|289444252|ref|ZP_06433996.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T46]
gi|289448365|ref|ZP_06438109.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CPHL_A]
gi|289570886|ref|ZP_06451113.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T17]
gi|289575408|ref|ZP_06455635.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis K85]
gi|289751363|ref|ZP_06510741.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T92]
gi|289754812|ref|ZP_06514190.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
EAS054]
gi|289758838|ref|ZP_06518216.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis T85]
gi|289762881|ref|ZP_06522259.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis GM
1503]
gi|298526180|ref|ZP_07013589.1| RNA polymerase principal sigma factor SigB [Mycobacterium
tuberculosis 94_M4241A]
gi|307085405|ref|ZP_07494518.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu012]
gi|313659647|ref|ZP_07816527.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
V2475]
gi|339632722|ref|YP_004724364.1| RNA polymerase sigma factor SigB [Mycobacterium africanum GM041182]
gi|340627711|ref|YP_004746163.1| RNA polymerase sigma factor SIGB [Mycobacterium canettii CIPT
140010059]
gi|378772440|ref|YP_005172173.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|385999490|ref|YP_005917789.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CTRI-2]
gi|386005585|ref|YP_005923864.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
RGTB423]
gi|392387342|ref|YP_005308971.1| sigB [Mycobacterium tuberculosis UT205]
gi|397674619|ref|YP_006516154.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis H37Rv]
gi|424805050|ref|ZP_18230481.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis W-148]
gi|433627826|ref|YP_007261455.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140060008]
gi|433631811|ref|YP_007265439.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070010]
gi|433635772|ref|YP_007269399.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070017]
gi|433642896|ref|YP_007288655.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070008]
gi|1171103|gb|AAA86044.1| sigma factor MysB [Mycobacterium tuberculosis H37Rv]
gi|13882539|gb|AAK47099.1| RNA polymerase principal sigma factor SigB [Mycobacterium
tuberculosis CDC1551]
gi|31619476|emb|CAD94914.1| RNA POLYMERASE SIGMA FACTOR SIGB [Mycobacterium bovis AF2122/97]
gi|121494233|emb|CAL72711.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|134150880|gb|EBA42925.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis str.
Haarlem]
gi|148506703|gb|ABQ74512.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|224774192|dbj|BAH26998.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|289417171|gb|EFD14411.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T46]
gi|289421323|gb|EFD18524.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CPHL_A]
gi|289539839|gb|EFD44417.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis K85]
gi|289544640|gb|EFD48288.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T17]
gi|289691950|gb|EFD59379.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T92]
gi|289695399|gb|EFD62828.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
EAS054]
gi|289710387|gb|EFD74403.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis GM
1503]
gi|289714402|gb|EFD78414.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis T85]
gi|298495974|gb|EFI31268.1| RNA polymerase principal sigma factor SigB [Mycobacterium
tuberculosis 94_M4241A]
gi|308365051|gb|EFP53902.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu012]
gi|326904326|gb|EGE51259.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis W-148]
gi|339332078|emb|CCC27784.1| RNA polymerase sigma factor SIGB [Mycobacterium africanum GM041182]
gi|340005901|emb|CCC45067.1| RNA polymerase sigma factor SIGB [Mycobacterium canettii CIPT
140010059]
gi|341602623|emb|CCC65299.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220537|gb|AEN01168.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CTRI-2]
gi|356594761|gb|AET19990.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|378545893|emb|CCE38171.1| sigB [Mycobacterium tuberculosis UT205]
gi|380726073|gb|AFE13868.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
RGTB423]
gi|395139524|gb|AFN50683.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis H37Rv]
gi|432155432|emb|CCK52682.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140060008]
gi|432159444|emb|CCK56748.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070008]
gi|432163404|emb|CCK60812.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070010]
gi|432167365|emb|CCK64876.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070017]
gi|440582187|emb|CCG12590.1| RNA POLYMERASE SIGMA FACTOR SIGB [Mycobacterium tuberculosis
7199-99]
gi|444896247|emb|CCP45508.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Rv]
Length = 323
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A V L+K+I+ GL + H L ++RLG E LAA +R
Sbjct: 30 YLNGIGKTALLNAAGEVELAKRIEAGLYAE-HLLETRKRLG-ENRKRDLAAVVR------ 81
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 82 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|167970067|ref|ZP_02552344.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Ra]
gi|254551766|ref|ZP_05142213.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289746512|ref|ZP_06505890.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
gi|294994199|ref|ZP_06799890.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis 210]
gi|297635318|ref|ZP_06953098.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
4207]
gi|297732314|ref|ZP_06961432.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
R506]
gi|375295476|ref|YP_005099743.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
4207]
gi|385995613|ref|YP_005913911.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5079]
gi|392431684|ref|YP_006472728.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
605]
gi|422813758|ref|ZP_16862130.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CDC1551A]
gi|424948366|ref|ZP_18364062.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|289687040|gb|EFD54528.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
gi|323718704|gb|EGB27866.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CDC1551A]
gi|328457981|gb|AEB03404.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
4207]
gi|339295567|gb|AEJ47678.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5079]
gi|358232881|dbj|GAA46373.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|392053093|gb|AFM48651.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
605]
Length = 333
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A V L+K+I+ GL + H L ++RLG E LAA +R
Sbjct: 40 YLNGIGKTALLNAAGEVELAKRIEAGLYAE-HLLETRKRLG-ENRKRDLAAVVR------ 91
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 92 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 127
>gi|296269171|ref|YP_003651803.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296091958|gb|ADG87910.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 367
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LLT E V L+K I+ GL +D KL CE AA I PEL
Sbjct: 76 YLREIGKVPLLTAEEEVELAKAIEAGLFAED-KL-------CEKK----AAG--IECPEL 121
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ E A+++L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 122 EDLVWEGIRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQ 162
>gi|1657704|gb|AAC44535.1| sigma factor MytB [Mycobacterium tuberculosis]
Length = 345
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A V L+K+I+ GL + H L ++RLG E LAA +R
Sbjct: 52 YLNGIGKTALLNPAGEVELAKRIEAGLYAE-HLLETRKRLG-ENRKRDLAAVVR------ 103
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 104 -----DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 139
>gi|379029019|dbj|BAL66752.1| RNA polymerase sigma factor [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
Length = 297
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ G+ LL A V L+K+I+ GL + H L ++RLG E LAA +R
Sbjct: 1 MRVYLNGIGKTALLNAAGEVELAKRIEAGLYAE-HLLETRKRLG-ENRKRDLAAVVR--- 55
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 56 --------DGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 91
>gi|124021877|ref|YP_001016184.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962163|gb|ABM76919.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 350
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ +SL+ + L+ + G S ++LA + +S
Sbjct: 43 VRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSE 102
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 103 LQLKKKLQIGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 146
>gi|113954561|ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881912|gb|ABI46870.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 335
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE-RLGCEPSMEQLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + LK+ R G E + E++A + +S
Sbjct: 27 VRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVAREEVAKAAGVS 86
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 87 AAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|385682368|ref|ZP_10056296.1| RNA polymerase sigma factor [Amycolatopsis sp. ATCC 39116]
Length = 447
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+LA +R
Sbjct: 145 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRIAEEEG-----EKLATQMR- 197
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 198 --RDLRWIIRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 241
>gi|239987439|ref|ZP_04708103.1| putative RNA polymerase principal sigma factor [Streptomyces
roseosporus NRRL 11379]
Length = 363
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + ERL P ++ A
Sbjct: 67 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------ERLTGTPDLDSRLAG----- 114
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 115 -DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 157
>gi|453073916|ref|ZP_21976714.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
gi|452765402|gb|EME23659.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
Length = 323
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L +RL + +L
Sbjct: 30 YLNGIGRTALLTAADEVELAKRIEAGLYAA-HVLETGKRLSAS------------KKRDL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+I+ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 77 AAIVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|307592489|ref|YP_003900080.1| RNA polymerase sigma-32 factor RpoH [Cyanothece sp. PCC 7822]
gi|306986134|gb|ADN18014.1| RNA polymerase, sigma 32 subunit, RpoH [Cyanothece sp. PCC 7822]
Length = 307
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%)
Query: 184 ISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
++P +RL Y + S LL +++ + L I+ L L ++ G S EQ
Sbjct: 1 MAPHPKASRLDSYFQSFNSITLLDNSQPIELGHLIQKWQKLLKLFHELGQQYGSSISPEQ 60
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R+S+ E IL + A + LV +N++ V+ IA RY G +++DL+Q
Sbjct: 61 FCQHYRLSKAEYDRILYQGKKAADTLVRANLKFVIFIANRYVGRGLELSDLIQ 113
>gi|455652448|gb|EMF31078.1| RNA polymerase sigma factor [Streptomyces gancidicus BKS 13-15]
Length = 428
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + KLRL P ++ A
Sbjct: 132 FRQYLREIGRIPLLTAAEEVELARRVEAGL-FAEEKLRLT------PDLDSRLAH----- 179
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 180 -DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 222
>gi|133468|sp|P27785.1|RPOD_STRAU RecName: Full=RNA polymerase sigma factor RpoD
Length = 317
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+LG ++ QLA
Sbjct: 21 FRQYLREIGRIPLLTAAEEVDLARRVEAGLFAE-------EKLGGAADLDSQLAV----- 68
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ SN+RLV+S+A+RY G M DLVQ
Sbjct: 69 --DLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQ 111
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE-PSMEQL 244
P + + ++ Y++ + LLTH + + L ++++ + L++ + L+ R G + PS +
Sbjct: 31 PPVDGDLVRSYLRDIGRVPLLTHEQEITLGRQVQELMRLEEAEQELEMRAGGQKPSAAEW 90
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A++ +S L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 91 ASAAGLSPALLKRKLSSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 142
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + +E G P + A +
Sbjct: 90 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELADQYEEDHGKYPDNREWAVLVD 149
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 150 MPPIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 196
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+ + A +
Sbjct: 82 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELID 141
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 142 MPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|411007263|ref|ZP_11383592.1| RNA polymerase principal sigma factor [Streptomyces globisporus
C-1027]
Length = 363
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + ERL P ++ A
Sbjct: 67 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAV----- 114
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 115 -DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 157
>gi|229491301|ref|ZP_04385127.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|453070914|ref|ZP_21974141.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
gi|226185408|dbj|BAH33512.1| RNA polymerase sigma factor SigB [Rhodococcus erythropolis PR4]
gi|229321840|gb|EEN87635.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|452759997|gb|EME18340.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
Length = 323
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L +RL + +L
Sbjct: 30 YLNGIGRTALLTAADEVELAKRIEAGLYAS-HVLATGKRLTVA------------KKRDL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 77 ATIVREGQSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|227495524|ref|ZP_03925840.1| sigma factor [Actinomyces coleocanis DSM 15436]
gi|226831071|gb|EEH63454.1| sigma factor [Actinomyces coleocanis DSM 15436]
Length = 505
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 12/104 (11%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LLT A+ V L+++I+ GL + HK++ + ++L + LR
Sbjct: 208 VKDYLKQIGKVSLLTAADEVDLARRIEAGLYAE-HKIKTE--------GDELPSKLR--- 255
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
ELQ ++ + L++ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 256 RELQILVHDGQLSKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 299
>gi|153304|gb|AAA26762.1| principal sigma-like factor [Streptomyces aureofaciens]
gi|450077|prf||1920369A RNA polymerase:SUBUNIT=sigma
Length = 393
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+LG ++ QLA
Sbjct: 97 FRQYLREIGRIPLLTAAEEVDLARRVEAGLFAE-------EKLGGAADLDSQLAV----- 144
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ SN+RLV+S+A+RY G M DLVQ
Sbjct: 145 --DLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQ 187
>gi|379709871|ref|YP_005265076.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
gi|374847370|emb|CCF64440.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
Length = 322
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L +RL AA R +L
Sbjct: 29 YLNGIGRTALLTAADEVELAKRIEAGLYAQ-HLLETGKRLS--------AARKR----DL 75
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 76 AVIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|1769598|gb|AAB39998.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRP----------------------ELQSILMECSLARE 267
RL LGC PS+ + A + + R EL SIL + A+E
Sbjct: 102 RLAIELGCRPSLNRWAQEMNLERAVLRDIIRQGKQRWAEQVGLSVKELDSILKAGAKAKE 161
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 162 HMIQANLRLVVSVAKKYQNRGLELLDLIQ 190
>gi|425452501|ref|ZP_18832318.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|425460781|ref|ZP_18840262.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443669300|ref|ZP_21134532.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
gi|159029420|emb|CAO90796.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389765706|emb|CCI08495.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|389826523|emb|CCI22935.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443330428|gb|ELS45144.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
Length = 377
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ + + K + LL+ E + L+ +K + ++ + +L+E L P+ + A +L
Sbjct: 63 EDTVGAFFKEMARYPLLSAEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALE 122
Query: 250 ISRP-ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 123 LDNERQLENRLYRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|170076898|ref|YP_001733536.1| group 2 sigma factor [Synechococcus sp. PCC 7002]
gi|169884567|gb|ACA98280.1| Group 2 sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRP----------------------ELQSILMECSLARE 267
RL LGC PS+ + A + + R EL SIL + A+E
Sbjct: 102 RLAIELGCRPSLNRWAQEMNLERAVLRDIIRQGKQRWAEQVGLSVKELDSILKAGAKAKE 161
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 162 HMIQANLRLVVSVAKKYQNRGLELLDLIQ 190
>gi|407647092|ref|YP_006810851.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
gi|407309976|gb|AFU03877.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
Length = 322
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L +RL + +L
Sbjct: 29 YLNGIGRTALLTAADEVELAKRIEAGLYAQ-HLLETGKRLSA------------TRKRDL 75
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 76 ALIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+ + A +
Sbjct: 82 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELID 141
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 142 MPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ ++ + G P+ ++ AA +
Sbjct: 127 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVN 186
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 187 MPMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 233
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G P ++ A +
Sbjct: 159 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELANQFEADNGHYPDTKEWATLVE 218
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 219 MPLVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 265
>gi|427717976|ref|YP_007065970.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350412|gb|AFY33136.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 371
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q+AA L ++ +L+S L + +A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 111 QVAAELDMTEKQLESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 164
>gi|427722866|ref|YP_007070143.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
gi|427354586|gb|AFY37309.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
Length = 396
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRP----------------------ELQSILMECSLARE 267
RL LGC P+M + AA + + R E++++L + A+E
Sbjct: 100 RLAIELGCRPTMGRWAAEVDLDREVLRQKIREGKQHWAACVDLDIKEIEAVLKAGAKAKE 159
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 160 HMIQANLRLVVSVAKKYQNRGLELLDLIQ 188
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+ + A +
Sbjct: 83 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELID 142
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 143 MPLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 189
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 58/104 (55%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + K+++ + L + K L + + + ++ AA + ++
Sbjct: 27 VRTYLHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTE 86
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
PEL IL A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 87 PELSRILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 130
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L+E P+ ++ A +
Sbjct: 68 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHESRVPTDKEWAEAAG 127
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 128 MPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 174
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + + G PS+ + A +
Sbjct: 82 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELID 141
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + L+ A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 142 MPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|385678070|ref|ZP_10051998.1| RNA polymerase sigma factor SigB [Amycolatopsis sp. ATCC 39116]
Length = 306
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 23/119 (19%)
Query: 184 ISPELIQ--NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
++P L + + ++ Y+ G+ LLT E V L+K+I+ GL
Sbjct: 1 MTPPLFEPADPVRAYLTGISRAGLLTIEEEVTLAKRIEAGLY-----------------A 43
Query: 242 EQLAASLRI----SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ L A+ R+ R +L +I E A+ +L+ +N+RLV+SIA+RY G + DL+Q
Sbjct: 44 QHLLATTRVLDPQRRADLLTIAEEGREAKNRLLEANLRLVVSIAKRYTGRGMSLLDLIQ 102
>gi|134098366|ref|YP_001104027.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|291006932|ref|ZP_06564905.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|133910989|emb|CAM01102.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length = 324
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT E V L+K+I+ G+ +H L +L E R +L
Sbjct: 31 YLNGIGRTALLTAQEEVDLAKRIEAGV-FANHVLETSGKLSPE------------RRSDL 77
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ + LA+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 78 KAVVRDGVLAKNHLMEANLRLVVSLAKRYTGRGMPLLDLIQ 118
>gi|428300988|ref|YP_007139294.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237532|gb|AFZ03322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 327
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 59/104 (56%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + K+++ + L + K L ++L EP++E+ A +
Sbjct: 20 VRTYLREIGRVPLLTREQEIIFGKQVQQMMILVEAKEALAKKLQREPTLEEWAIQVNQPE 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 AELNLTVHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|124026787|ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ + L++ + L+ LG +P + A +S
Sbjct: 28 VRSYLRDIGRVPLLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGLSP 87
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 88 IQLKKKLKSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 63/116 (54%)
Query: 181 RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240
R++ P + ++ Y+ + LL+H + + K+++ + L + L++ L P+
Sbjct: 7 RTVAQPRSTGDMVRTYLHEIGRVPLLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPT 66
Query: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ A + IS EL +L + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 67 KTEWAQAATISEAELDRVLRQGRQAKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 122
>gi|390564968|ref|ZP_10245695.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
gi|390171779|emb|CCF85025.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
Length = 329
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 18/101 (17%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y + V LLTH E + S+ ++ GL ++R+ S E A EL
Sbjct: 43 YFRDVGGHRLLTHGEEIEYSRAVRAGLEA-------RKRV---DSGEDSA--------EL 84
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ IL AREKL+ N+RLV+SIA++Y G + DL+Q
Sbjct: 85 RMILERAKAAREKLIRHNLRLVVSIAKKYRASGLPLIDLIQ 125
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP- 253
+ K + LL E + L+ +K + ++ + +L+E P+ + A +L+++
Sbjct: 66 AFFKEMARYPLLKPEEEIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANER 125
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 126 QLENRLYRGRCAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|302525710|ref|ZP_07278052.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434605|gb|EFL06421.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length = 317
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ G+ H L E L + R EL
Sbjct: 24 YLNGIGKTALLTAADEVELAKRIEAGV-FAQHMLDTAEDLTPQ------------RRKEL 70
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ + +A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 71 RALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 111
>gi|444432030|ref|ZP_21227190.1| RNA polymerase sigma factor SigB [Gordonia soli NBRC 108243]
gi|443887204|dbj|GAC68911.1| RNA polymerase sigma factor SigB [Gordonia soli NBRC 108243]
Length = 340
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+TGL H L K+RL + +L
Sbjct: 47 YLNGIGRTALLNAEQEVELAKQIETGLYAK-HVLATKKRLSA------------TKKRDL 93
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 94 AQIVREGEHARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 134
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLT + V LS+ I+ L L+ + + G EP+ Q AA+ L+ L
Sbjct: 236 LLTAKQEVELSEGIQDFLKLEAIQKEVAHYNGGEPTFTQWAAAAGTDENTLRKRLSYGIY 295
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +V SNVRLV+SIA+ ++ G + +DL+Q
Sbjct: 296 CKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQ 327
>gi|255553456|ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223543041|gb|EEF44576.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 389
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 222 LSLDDH------KLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVR 275
L L DH + R+ E EP+ +QLA +LR+ + + IL + +RE++ + R
Sbjct: 127 LCLKDHARVEAARRRIAETQEHEPTSKQLAEALRMRKKNVDKILCKGRQSRERITGNYRR 186
Query: 276 LVMSIAQRYDNMGADMADLVQ 296
LV+SIA RY G + DL+Q
Sbjct: 187 LVLSIANRYRGKGLSLQDLIQ 207
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 59/110 (53%)
Query: 187 ELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAA 246
+ ++ ++ Y++ + LL E + L++KI L L+ + +L L EP + AA
Sbjct: 66 QFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLDREPHDREWAA 125
Query: 247 SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 126 VASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 175
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ RL ++L +P + A +++
Sbjct: 78 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVGDRLVQQLERQPQESEWAEAVQ 137
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 138 LPLQKFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 184
>gi|87303408|ref|ZP_01086196.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87282056|gb|EAQ74018.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 330
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE-PSMEQLAASLRIS 251
++ Y++ + LLTH + + L ++++ + L++ + L+ R G + PS + A++ +S
Sbjct: 22 VRSYLRDIGRVPLLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLS 81
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 82 PALLKRKLSSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 126
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE--PSMEQLAASLRI 250
++ Y++ + LL+H + + L ++++ + L+ + L+E+ G E P+ E LA + +
Sbjct: 47 VRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAE-LAKAAGL 105
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S +L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 106 SAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 151
>gi|335429392|ref|ZP_08556290.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
gi|334889402|gb|EGM27687.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
Length = 398
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
I + ++ Y+K + ELL+ E +R +K I+ GL D+ LK + E+
Sbjct: 94 INDPVRMYLKEIGKVELLSADEEIRYAKDIEAGLMADEQIKDLKAEDALDADTER----- 148
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ ++M+ +++ +LV +N+RLV+SIA+R+ G DL+Q
Sbjct: 149 -----QLKDLIMKGEISKMRLVEANLRLVVSIAKRHVGRGMLFLDLIQ 191
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + K+++ ++ + K L+++L EP+ E+ A ++ S
Sbjct: 27 IRSYLHEIGRVPLLTHEQEIVFGKQVQQMMAFLEAKETLEKKLKREPTEEEWAEAVGHSV 86
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++++ +++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 87 GDLKNLVKIGRRSKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 130
>gi|453382635|dbj|GAC82930.1| RNA polymerase sigma factor SigB [Gordonia paraffinivorans NBRC
108238]
Length = 340
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L K+RL AA R +L
Sbjct: 47 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HLLATKKRLS--------AAKKR----DL 93
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 94 QIIVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 134
>gi|33863339|ref|NP_894899.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640788|emb|CAE21243.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 320
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+H + + L ++++ +SL+ + L+ + G S ++LA + +S
Sbjct: 13 VRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSE 72
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 73 LQLKKKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 116
>gi|453051815|gb|EME99312.1| RNA polymerase sigma factor [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 379
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + E+L +P ++ A
Sbjct: 83 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLSNDPDLDTCLAL----- 130
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 131 -DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYIGRGLTMLDLVQ 173
>gi|403512655|ref|YP_006644293.1| RNA polymerase sigma factor, sigma-70 family protein [Nocardiopsis
alba ATCC BAA-2165]
gi|402798576|gb|AFR05986.1| RNA polymerase sigma factor, sigma-70 family protein [Nocardiopsis
alba ATCC BAA-2165]
Length = 470
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + +LLT + V L+K+++ GL + RLG +++ + R EL
Sbjct: 171 YLKAIGRRQLLTAEQEVDLAKRVEAGLYA-------EYRLGLHGEIDESVPMADVEREEL 223
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + A+ ++ +N+RLV+S+A++Y + G + D+VQ
Sbjct: 224 EWVAEDGRKAKSHMLEANLRLVVSVAKKYSDRGMSLLDVVQ 264
>gi|345014897|ref|YP_004817251.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
violaceusniger Tu 4113]
gi|344041246|gb|AEM86971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
violaceusniger Tu 4113]
Length = 414
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LL+ E V L+++++ GL +E+LG P ++ QLA
Sbjct: 118 FRQYLREIGRIPLLSAVEEVELARRVEAGLFA-------EEKLGNTPDLDSQLAV----- 165
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 166 --DLDRLVVLGRVAKRRLIEANLRLVVSVAKRYIGRGLTMLDLVQ 208
>gi|408677973|ref|YP_006877800.1| RNA polymerase principal sigma factor HrdA [Streptomyces venezuelae
ATCC 10712]
gi|328882302|emb|CCA55541.1| RNA polymerase principal sigma factor HrdA [Streptomyces venezuelae
ATCC 10712]
Length = 336
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT E V L+++++ GL + E+L P ++ AS
Sbjct: 40 FRQYLREIGRIPLLTAEEEVDLARRVEAGLFAE-------EKLANTPDLDSRLAS----- 87
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ KL+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 88 -DLDRLVVLGRIAKRKLIEANLRLVVSVAKRYVGRGLTMLDLVQ 130
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
LLT + V S+ I+ L L+ + + + G EP+ Q AA+ L+ L
Sbjct: 227 LLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLRRRLNHGVY 286
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++V SNVRLV+SIA+ ++ G + +DL+Q
Sbjct: 287 CKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQ 318
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 63/111 (56%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P+ + ++ Y+ + LLT + + K+++ + L + K L + L EP+ + A
Sbjct: 20 PDSSTDTVRTYLHEIGRVALLTREQEIIYGKQVQQMMQLLEAKEELAKELRREPTEVEWA 79
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++S EL+ ++ + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 LQVQLSEAELKRLMHQGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 130
>gi|296139548|ref|YP_003646791.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027682|gb|ADG78452.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 330
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT + V L+K+I+ GL H L K+RL + +L
Sbjct: 37 YLNGIGRTALLTAEDEVELAKRIEAGLYAQ-HLLDTKKRLSAS------------KKRDL 83
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ + AR+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 84 AFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 124
>gi|441180909|ref|ZP_20970215.1| RNA polymerase sigma factor [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440614305|gb|ELQ77593.1| RNA polymerase sigma factor [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 398
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT E V L+++++ GL + KLRL L QLA
Sbjct: 102 FRQYLREIGRIPLLTAVEEVELARRVEAGL-FAEEKLRLAPDLDS-----QLAL------ 149
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 150 -DLDKLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 192
>gi|221636011|ref|YP_002523887.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Thermomicrobium roseum DSM 5159]
gi|221157983|gb|ACM07101.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Thermomicrobium roseum DSM 5159]
Length = 334
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 26/105 (24%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI----S 251
Y + V LLTH E + S+ ++ GL AA RI
Sbjct: 48 YFREVGGHRLLTHQEEIEYSRAVRAGL----------------------AARKRIEAGED 85
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
PEL+ ++ + AREKL+ N+RLV+SIA+RY + + DL+Q
Sbjct: 86 TPELRELVRKGQEAREKLIRHNLRLVVSIAKRYRSSELPLIDLIQ 130
>gi|54025745|ref|YP_119987.1| RNA polymerase sigma factor SigB [Nocardia farcinica IFM 10152]
gi|54017253|dbj|BAD58623.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length = 322
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L +RL + +L
Sbjct: 29 YLNGIGRTALLTAADEVELAKRIEAGLYAQ-HLLETSKRLSA------------AKKKDL 75
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 76 AMIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|3077738|dbj|BAA25787.1| SigB [Cyanidium caldarium]
Length = 424
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
YV+ + + LT EV LS + +L + L +LG EP+ + + ++ +S E
Sbjct: 73 AYVREICRLDRLTDEEVASLSMATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEE 132
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRY 284
++ + ARE+LV SN+RLV++IA RY
Sbjct: 133 VRKRIERGRRARERLVASNLRLVLAIANRY 162
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E P+ ++ A +
Sbjct: 80 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAEAAG 139
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 140 MPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|224000633|ref|XP_002289989.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220975197|gb|EED93526.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 204 ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL-QSILMEC 262
ELLT E L K+K + + L +G PS+ + AA+ P L + +++
Sbjct: 3 ELLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWAAA---CSPRLFREMMLTA 59
Query: 263 SLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A++++V N+RLV+SIA+RY +G ++ DLVQ
Sbjct: 60 KEAKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQ 93
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + +L E P+ ++ A +
Sbjct: 64 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAEAAG 123
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 124 MPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 170
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L+++I L+L+ + L E+L PS + AA++
Sbjct: 88 EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVD 147
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 148 SPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 194
>gi|229828460|ref|ZP_04454529.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
gi|229793054|gb|EEP29168.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
Length = 614
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE--RLG--CEPSMEQL 244
I + ++ Y+K + LLT E V L++K++ GL D+ L+E R G E M L
Sbjct: 301 IDDPVRMYLKEIGKVHLLTAEEEVDLAQKMEKGLKADEQIEILREEIRSGDLSEEDMMNL 360
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A ++I L++ A++KL +N+RLV+SIA+RY G DL+Q
Sbjct: 361 EAQIKI----LKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQ 408
>gi|441513649|ref|ZP_20995477.1| putative RNA polymerase sigma factor [Gordonia amicalis NBRC
100051]
gi|441451595|dbj|GAC53438.1| putative RNA polymerase sigma factor [Gordonia amicalis NBRC
100051]
Length = 338
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L K+RL + +L
Sbjct: 45 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HVLATKKRLSA------------TKKRDL 91
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 92 ATIVREGEAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 132
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L+++I L+L+ + L E+L PS + AA++
Sbjct: 88 EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVD 147
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 148 SPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 194
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L+++I L+L+ + L E+L PS + AA++
Sbjct: 73 EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVD 132
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 133 SPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 179
>gi|359419322|ref|ZP_09211280.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
gi|358244729|dbj|GAB09349.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
Length = 321
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L ++R+G + + +L
Sbjct: 28 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HVLATRKRIGP------------VRKRDL 74
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 75 NQIVREGEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 115
>gi|358463522|ref|ZP_09173562.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357070106|gb|EHI79876.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 392
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 19/104 (18%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRIS---R 252
Y+K + LLT E V L+K+I+ GL + E+L+ + R++ R
Sbjct: 99 YLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------AAEKLSEARRVTVALR 142
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+++ + ++A+ KLV +N+RLV+SIA+RY G DL+Q
Sbjct: 143 VDLEAVERDGNVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 186
>gi|186681941|ref|YP_001865137.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186464393|gb|ACC80194.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 339
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 70/125 (56%)
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL 231
+Q+ K L + P + ++ Y++ + +LLT + V +++++ ++L K L
Sbjct: 11 VQKTKKKSLAADKKPRATDDIVRSYLQEIGRVDLLTREQEVIFAQQVQLMMNLLAAKEEL 70
Query: 232 KERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADM 291
+L EP++++ A + + L+ L + A++K++ +N+RLV+++A++Y + +
Sbjct: 71 AVKLDHEPTLQEWADRVELGAEVLELQLSQGHQAKQKMIQANLRLVVAVAKKYQHRNLEF 130
Query: 292 ADLVQ 296
DL+Q
Sbjct: 131 MDLIQ 135
>gi|343924623|ref|ZP_08764167.1| RNA polymerase sigma factor SigB [Gordonia alkanivorans NBRC 16433]
gi|404258486|ref|ZP_10961805.1| RNA polymerase sigma factor SigB [Gordonia namibiensis NBRC 108229]
gi|409390116|ref|ZP_11241887.1| RNA polymerase sigma factor SigB [Gordonia rubripertincta NBRC
101908]
gi|343765423|dbj|GAA11093.1| RNA polymerase sigma factor SigB [Gordonia alkanivorans NBRC 16433]
gi|403199943|dbj|GAB85121.1| RNA polymerase sigma factor SigB [Gordonia rubripertincta NBRC
101908]
gi|403403000|dbj|GAC00215.1| RNA polymerase sigma factor SigB [Gordonia namibiensis NBRC 108229]
Length = 338
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L K+RL + +L
Sbjct: 45 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HVLATKKRLSA------------TKKRDL 91
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 92 ATIVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 132
>gi|302545597|ref|ZP_07297939.1| RNA polymerase sigma (70) factor RpoD [Streptomyces hygroscopicus
ATCC 53653]
gi|302463215|gb|EFL26308.1| RNA polymerase sigma (70) factor RpoD [Streptomyces himastatinicus
ATCC 53653]
Length = 443
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LL+ AE V L+++++ GL +E+L P ++ QLA
Sbjct: 147 FRQYLREIGRIPLLSAAEEVELARRVEAGLFA-------EEKLASAPDLDSQLAL----- 194
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 195 --DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 237
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE--PSMEQLAASLRI 250
++ Y++ + LL+H + + L ++++ + L+ + L+E+ G E P+ E LA + +
Sbjct: 13 VRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAE-LAKAAGL 71
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S +L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 72 SAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|416411729|ref|ZP_11688760.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
gi|357260283|gb|EHJ09729.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
Length = 442
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM---EQLAASLRISR 252
Y+K + LL E + L K++K ++ + K E L E S E+ A + IS
Sbjct: 11 YLKRIGQIPLLKPDEEIELGKQVKRMMTCWEKK----ENLQVEKSYITEEEWAKEIGISV 66
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
ELQ IL A+EK++ +N+RLV++++++Y G + DLV
Sbjct: 67 RELQLILKRGKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLV 109
>gi|383831200|ref|ZP_09986289.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
gi|383463853|gb|EID55943.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
Length = 468
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+L+ +R
Sbjct: 166 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRVAEEEG-----EKLSTQMR- 218
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 219 --RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 262
>gi|86739990|ref|YP_480390.1| sigma 38 [Frankia sp. CcI3]
gi|86566852|gb|ABD10661.1| RNA polymerase, sigma 70 subunit, RpoD [Frankia sp. CcI3]
Length = 409
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 20/105 (19%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP-- 253
Y+K + LLT E V L+K+I+ GL + E+LA + + + P
Sbjct: 115 YLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------ASEKLAVATKKTSPQM 158
Query: 254 --ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q
Sbjct: 159 RRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 203
>gi|134098380|ref|YP_001104041.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|291006918|ref|ZP_06564891.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|133911003|emb|CAM01116.1| RNA polymerase major sigma factor [Saccharopolyspora erythraea NRRL
2338]
Length = 467
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + RL++ E + E+LA +R
Sbjct: 165 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE---RLRQ---AEEAEERLAMQMR- 217
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 218 --RDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 261
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 60/104 (57%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT + + K+++ +SL + K +L ++LG E + ++ A +++
Sbjct: 20 VRTYLHEIGRVPLLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQMDP 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 EELEKTQQKGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|29832222|ref|NP_826856.1| RNA polymerase sigma factor [Streptomyces avermitilis MA-4680]
gi|29609340|dbj|BAC73391.1| putative RNA polymerase sigma factor [Streptomyces avermitilis
MA-4680]
Length = 389
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+L P ++ QL
Sbjct: 93 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLSSTPDLDSQLGL----- 140
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 141 --DLDKLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 183
>gi|158313963|ref|YP_001506471.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158109368|gb|ABW11565.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 409
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 20/105 (19%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP-- 253
Y+K + LLT E V L+K+I+ GL + E+LA + + + P
Sbjct: 115 YLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------ASEKLAVATKKTSPQM 158
Query: 254 --ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q
Sbjct: 159 RRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 203
>gi|271965471|ref|YP_003339667.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like
protein [Streptosporangium roseum DSM 43021]
gi|270508646|gb|ACZ86924.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like
protein [Streptosporangium roseum DSM 43021]
Length = 452
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + LLT A+ V L+K+I+ GL + +L EP + A R +L
Sbjct: 159 YLKSIGRRTLLTAAQEVELAKRIEAGLYAE-------SKLEAEPGLSAAA------RDDL 205
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + A++ ++ +N+RLV+S+A++Y + G + D+VQ
Sbjct: 206 EWVAEDGRRAKDHMLEANLRLVVSVAKKYTDRGMALLDVVQ 246
>gi|111221463|ref|YP_712257.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
gi|111148995|emb|CAJ60675.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
Length = 409
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 20/105 (19%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP-- 253
Y+K + LLT E V L+K+I+ GL + E+LA + + + P
Sbjct: 115 YLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------ASEKLAVATKKTSPQM 158
Query: 254 --ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q
Sbjct: 159 RRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 203
>gi|374849564|dbj|BAL52576.1| RNA polymerase primary sigma factor [uncultured prokaryote]
Length = 334
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 18/101 (17%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y + V LLTH E + S+ ++ GL+ K+R+ PEL
Sbjct: 48 YFREVGGHRLLTHQEEIEYSRAVRAGLAA-------KKRIEAGEDT-----------PEL 89
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ + AREKL+ N+RLV+SIA+RY + + DL+Q
Sbjct: 90 RELVRKGMEAREKLIRHNLRLVVSIAKRYRSSELPLIDLIQ 130
>gi|40353297|gb|AAR84412.1| essential primary sigma 70 factor [Frankia sp. EaI-12]
Length = 409
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + LLT E V L+K+I+ GL D KL + + P M R +L
Sbjct: 115 YLKEIGKVPLLTAEEQVDLAKRIEAGLFASD-KLAVATK-KTSPQM----------RRDL 162
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++I + +A+ KLV +N+RLV+SIA+RY G DL+Q
Sbjct: 163 EAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 203
>gi|428217032|ref|YP_007101497.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427988814|gb|AFY69069.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 346
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 160 SKKKILSQNKSILQQNGSKQLRS----MISPELIQNRLKGYVKGVVSEELLTHAEVVRLS 215
S+KK + + GS RS + P + + ++ Y+ + LLT E +
Sbjct: 2 SRKKSIQAKAGVRSATGSATERSADKGVARPGVSADMVRTYLHEIGKIPLLTSEEEIIFG 61
Query: 216 KKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVR 275
K+++ + L + L E+L +P+ + A ++ EL+ I+ + + ++ K++ +N+R
Sbjct: 62 KRVQQLMRLSELYEDLAEQLDRQPTQAEWADKAGLNIEELEQIVRDGTRSKRKMIEANLR 121
Query: 276 LVMSIAQRYDNMGADMADLVQ 296
LV+S+A++Y ++ DLVQ
Sbjct: 122 LVVSVAKKYQKRNLELLDLVQ 142
>gi|257056422|ref|YP_003134254.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
gi|256586294|gb|ACU97427.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
Length = 439
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+L+ +R
Sbjct: 137 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRIAEEEG-----EKLSTQMR- 189
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 190 --RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 233
>gi|323449639|gb|EGB05525.1| hypothetical protein AURANDRAFT_60247 [Aureococcus anophagefferens]
Length = 399
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 191 NRLKGYV--------KGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
RL+ YV K ++S LLT E VR +++T ++++ + + P+
Sbjct: 54 TRLRAYVNEIVAPDIKDLLSRPLLTKDEEVRFGTRVRTLVAIESARDAWADAYDRPPTDA 113
Query: 243 QLAASLRISRPE-LQSILMECSLAREKLVMSNVRLVMSIAQR 283
+LA ++ + P L + L EC ARE +++SN+RLV+++A+R
Sbjct: 114 ELAPTVGCADPAALAATLAECREAREVMMLSNMRLVVAMARR 155
>gi|28572422|ref|NP_789202.1| RNA polymerase sigma factor [Tropheryma whipplei TW08/27]
gi|28410553|emb|CAD66939.1| RNA polymerase principal sigma factor hrdb [Tropheryma whipplei
TW08/27]
Length = 387
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LLT E V L+K+I+ GL ++ +L E P +++
Sbjct: 91 VKDYLKQIGKVSLLTADEEVSLAKRIEAGLFAEE---KLSESGDLAPKLKR--------- 138
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ ++ + A++ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 139 -ELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRGMQFLDLIQ 181
>gi|392944009|ref|ZP_10309651.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392287303|gb|EIV93327.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 392
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 20/105 (19%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP-- 253
Y+K + LLT E V L+K+I+ GL + E+LA + + + P
Sbjct: 98 YLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------ASEKLAVATKKTSPQM 141
Query: 254 --ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q
Sbjct: 142 RRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 186
>gi|375094960|ref|ZP_09741225.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655693|gb|EHR50526.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 470
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+L+ +R
Sbjct: 170 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRVAEEEG-----EKLSTQMR--- 220
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 221 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 264
>gi|375101493|ref|ZP_09747756.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374662225|gb|EHR62103.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 474
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+L+ +R
Sbjct: 172 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRVAEEEG-----EKLSTQMR- 224
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 225 --RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 268
>gi|452821943|gb|EME28967.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 540
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
GY+ + LL+ E L+ +K L D + R+ ++ G + S+E+ A +S +
Sbjct: 221 GYIHAIDKSRLLSQEEEAELANYLKKQTRLIDIQQRMMQKFGRKLSLEEWAIRAGMSVQD 280
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRY 284
L ++ + A+EKL+ +N+RLV SIA R+
Sbjct: 281 LHDAIILGNNAKEKLITANLRLVHSIASRF 310
>gi|449017553|dbj|BAM80955.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 591
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 190 QNR--LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
QNR L Y+ + +L+ H E V L+++++ +++ + L++ L P+ ++ A +
Sbjct: 265 QNRDSLFDYLDEIRRYQLIEHEEEVALAREVQHLNRIEEKRQDLEKMLHRPPTSQEWARA 324
Query: 248 LRI-SRPELQSILMECSLAREKLVMSNVRLVMSIAQRY----DNMGADMADLVQ 296
L + S ELQ L AR +LV SN+RLV +I R+ + +G M+DL+Q
Sbjct: 325 LNMKSAAELQEALARGHQARNRLVTSNLRLVNAIVNRFSRRAEAIGVTMSDLMQ 378
>gi|383763158|ref|YP_005442140.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381383426|dbj|BAM00243.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 441
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LLT E + L++KI+ G+ + +L+E G S ++L + EL
Sbjct: 110 YLRDIGRHPLLTAEEEMELAEKIRLGVEAEK---KLQELFGGR-SEDELTDEELDQKDEL 165
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ + +A +L SN+RLV+S+A+RY G + DL+Q
Sbjct: 166 EMLVHQGRMAHSRLAQSNLRLVVSVAKRYIGRGLNFLDLIQ 206
>gi|291302005|ref|YP_003513283.1| RpoD subfamily RNA polymerase sigma-70 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290571225|gb|ADD44190.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stackebrandtia
nassauensis DSM 44728]
Length = 323
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 11/104 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ G+ L+ AE V L+K I+TGL E +P+ + L++ R
Sbjct: 25 VRAYLNGIGKHRLINAAEEVDLAKAIETGL--------FAEWRLSDPA--RPIDDLQLER 74
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ E A+ L+ +N+RLV+SIA+RY G + DL+Q
Sbjct: 75 -DLRQIVAEGRRAKSMLLKANLRLVVSIAKRYVGRGVALLDLIQ 117
>gi|323450165|gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [Aureococcus
anophagefferens]
Length = 325
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA-ASLRISRPE 254
Y+ +E LL+ E V L+ +++ ++L + LK LG EPS + A A+ +
Sbjct: 8 YLPERAAEPLLSLDEEVALATEVQALVALRAKRSELKAALGREPSGGEWANATGYANYGA 67
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L++ + RE+L+ N+RLV+S+A+RY + G DL Q
Sbjct: 68 LRTRMGHMKACREELIQRNLRLVLSVAKRYGDCGLAFTDLCQ 109
>gi|297199501|ref|ZP_06916898.1| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
gi|297147415|gb|EDY56986.2| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
Length = 428
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT E V L+++++ GL + E+L P ++ QLA
Sbjct: 132 FRQYLREIGRIPLLTAVEEVELARRVEAGLFAE-------EKLSSTPDLDSQLAL----- 179
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 180 --DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 222
>gi|288916958|ref|ZP_06411330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288351667|gb|EFC85872.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 392
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 20/105 (19%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP-- 253
Y+K + LLT E V L+K+I+ GL + E+LA + + + P
Sbjct: 98 YLKEIGKVPLLTAEEEVDLAKRIEAGLF----------------ASEKLAVATKKTSPQM 141
Query: 254 --ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++I + +A+ KLV +N+RLV+SIA+RY G DL+Q
Sbjct: 142 RRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 186
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA-ASLRIS 251
++ Y++ + LLTH + + K+++ +L + L G EP+ ++ A AS
Sbjct: 11 VRTYLREIGRVPLLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASDLAD 70
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL I+ LA+ K+V +N+RLV+S+A++Y D+ DL+Q
Sbjct: 71 SEELAKIIAAGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|318040801|ref|ZP_07972757.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CB0101]
Length = 381
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 42/143 (29%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTG--------------------LSLDDHKLRLKERL 235
Y++ + +LL+H E + L+++++ + L+D + RL +L
Sbjct: 25 YLQDIGRVDLLSHEEELTLARQVQRRERLLRERRRLAATHPALQELIDLEDDQQRLASQL 84
Query: 236 GCEPSMEQLAASLR----------------------ISRPELQSILMECSLAREKLVMSN 273
G P+++QLA R +S EL+ L AR++++ +N
Sbjct: 85 GHWPAVQQLAEQQRCTVSELREQIRQKQQAWAEHSNLSVAELKQALHHGRRARDRMIQAN 144
Query: 274 VRLVMSIAQRYDNMGADMADLVQ 296
+RLV+++A++Y G ++ DLVQ
Sbjct: 145 LRLVVAVAKKYQQRGMELLDLVQ 167
>gi|297194519|ref|ZP_06911917.1| RNA polymerase sigma factor [Streptomyces pristinaespiralis ATCC
25486]
gi|297152294|gb|EFH31643.1| RNA polymerase sigma factor [Streptomyces pristinaespiralis ATCC
25486]
Length = 366
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+L P + QLA
Sbjct: 70 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLANTPDPDSQLAV----- 117
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 118 --DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 160
>gi|28493466|ref|NP_787627.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
gi|28476507|gb|AAO44596.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
Length = 387
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LLT E V L+K+I+ GL ++ +L E P +++
Sbjct: 91 VKDYLKQIGKVSLLTADEEVSLAKRIEAGLFAEE---KLSESGDLAPKLKR--------- 138
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ ++ + A++ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 139 -ELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRGMQFLDLIQ 181
>gi|384566591|ref|ZP_10013695.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
gi|384522445|gb|EIE99640.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
Length = 343
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT E V L+K+I+ G+ H L + L E R EL
Sbjct: 50 YLNGIGKTALLTAEEEVDLAKRIEAGV-FAQHMLDTSDDLSPE------------RREEL 96
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+I+ + A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 97 TAIVRDGENAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQ 137
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L ++ + +L +RL +P + A ++
Sbjct: 75 EDSIRLYLQEIGRIRLLRADEEIELARKIAELLQMERVREQLCDRLDRDPHDSEWAEAVE 134
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 135 LPINSFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 181
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + +LL E V LS+++ + L+ + +E+ G P+ + A
Sbjct: 408 IRSYLYEIGRYQLLQPGEEVELSRQVCVLMDLERFQKSFREQHGKSPTELEWARGCGYGE 467
Query: 253 P--ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ + + A+E++V +N+RLV+SIA+RY N G + DL+Q
Sbjct: 468 DVEALRKHIRDGRSAKERMVTANLRLVVSIAKRYSNRGVALQDLIQ 513
>gi|408532063|emb|CCK30237.1| RNA polymerase principal sigma factor hrdA [Streptomyces davawensis
JCM 4913]
Length = 437
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+L P ++ QL
Sbjct: 141 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLSNTPDLDSQLGL----- 188
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 189 --DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 231
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
I++ + + K + LL+ E V L+ +K ++ + L +L PS +LA ++
Sbjct: 48 IEDSIGSFFKEMARYPLLSAEEEVNLAYAVKFLSDCEEKQQELHRQLERTPSKMELAKAM 107
Query: 249 RI-SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ S +L + L + A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 108 GLESERQLDNRLYKGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 156
>gi|290960625|ref|YP_003491807.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
gi|260650151|emb|CBG73267.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
Length = 387
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT E V L+++++ GL + ERLG ++ A
Sbjct: 91 FRQYLREIGRIPLLTAVEEVELARRVEAGLFAE-------ERLGTASGLDTRLAL----- 138
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 139 -DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 181
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + L+E+ G E + +LA + +S
Sbjct: 47 VRSYLRDIGRVPLLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLS 106
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 107 AVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 151
>gi|398786196|ref|ZP_10548973.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
gi|396993817|gb|EJJ04874.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
Length = 385
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT AE V L+++++ GL + E+L P + S R++
Sbjct: 89 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLTNTPDL-----STRLAV 136
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ SN+RLV+S+A+RY G M DLVQ
Sbjct: 137 -DLDRLVVLGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQ 179
>gi|300784474|ref|YP_003764765.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei U32]
gi|399536359|ref|YP_006549021.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei S699]
gi|299793988|gb|ADJ44363.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei U32]
gi|398317129|gb|AFO76076.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei S699]
Length = 343
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL+ A+ V L+K+I+ G+ H L E L + R EL
Sbjct: 50 YLNGIGKTALLSAADEVELAKRIEAGV-FAQHMLDTGENLTTK------------RRTEL 96
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + +A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 97 AALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 137
>gi|317506478|ref|ZP_07964279.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
gi|316255239|gb|EFV14508.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
Length = 348
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT + V L+K I+ GL + H + E G P R EL
Sbjct: 55 YLNGIGRTALLTAEDEVTLAKSIEAGLYAE-HLINTSE--GLTPQ----------RRREL 101
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 102 KAVVRDGRAARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQ 142
>gi|271963879|ref|YP_003338075.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
gi|270507054|gb|ACZ85332.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
Length = 392
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LLT E V L+K I+ GL +D + RL PE
Sbjct: 102 YLREIGRVPLLTAEEEVELAKSIEAGLFAEDKLTSVVSRLAF---------------PEF 146
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ + + A+++L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 147 KELVWQGTRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQ 187
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + L+E+ G E + +LA + +S
Sbjct: 13 VRSYLRDIGRVPLLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLS 72
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 73 AVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|429197710|ref|ZP_19189588.1| putative RNA polymerase sigma factor RpoD [Streptomyces ipomoeae
91-03]
gi|428666600|gb|EKX65745.1| putative RNA polymerase sigma factor RpoD [Streptomyces ipomoeae
91-03]
Length = 429
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+L P ++ +LA
Sbjct: 133 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLSNTPDLDSELAL----- 180
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 181 --DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 223
>gi|443490417|ref|YP_007368564.1| RNA polymerase sigma factor SigB [Mycobacterium liflandii 128FXT]
gi|442582914|gb|AGC62057.1| RNA polymerase sigma factor SigB [Mycobacterium liflandii 128FXT]
Length = 323
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL V L+K+I+ GL + H L ++RLG + EL
Sbjct: 30 YLNGIGKTALLNAEGEVELAKRIEAGLYAE-HLLATRKRLGDN------------RKREL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 77 AAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|336320563|ref|YP_004600531.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [[Cellvibrio]
gilvus ATCC 13127]
gi|336104144|gb|AEI11963.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [[Cellvibrio]
gilvus ATCC 13127]
Length = 541
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL + ERLG +ME +I R
Sbjct: 245 VKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE-------ERLGSGATMEP-----KIRR 292
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 293 -ELEWIAQDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 335
>gi|344999511|ref|YP_004802365.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces sp.
SirexAA-E]
gi|344315137|gb|AEN09825.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces sp.
SirexAA-E]
Length = 355
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LL A+ V L+++++ GL + ERL P + A
Sbjct: 59 FRQYLREIGRIPLLGAADEVELARRVEAGLFAE-------ERLAATPGPDTRLAQ----- 106
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L ++++ +A +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 107 -DLGRLVVQGRMAERRLIEANLRLVVSVAKRYAGRGLTMLDLVQ 149
>gi|183982017|ref|YP_001850308.1| RNA polymerase sigma factor SigB [Mycobacterium marinum M]
gi|183175343|gb|ACC40453.1| RNA polymerase sigma factor SigB [Mycobacterium marinum M]
Length = 333
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL V L+K+I+ GL + H L ++RLG + EL
Sbjct: 40 YLNGIGKTALLNAEGEVELAKRIEAGLYAE-HLLATRKRLGDN------------RKREL 86
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 87 AAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 127
>gi|118618673|ref|YP_907005.1| RNA polymerase sigma factor SigB [Mycobacterium ulcerans Agy99]
gi|118570783|gb|ABL05534.1| RNA polymerase sigma factor SigB [Mycobacterium ulcerans Agy99]
Length = 323
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL V L+K+I+ GL + H L ++RLG + EL
Sbjct: 30 YLNGIGKTALLNAEGEVELAKRIEAGLYAE-HLLATRKRLGDN------------RKREL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 77 AAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|296269678|ref|YP_003652310.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296092465|gb|ADG88417.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 478
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 9/101 (8%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + LLT A+ V L+K+I+ GL + +LK+ L S E+L R +L
Sbjct: 181 YLKSIGRRTLLTAAQEVELAKRIEAGLYAE---YKLKQAL---ESGEKLPPGFR---EDL 231
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ + A++ ++ +N+RLV+S+A++Y + G + D+VQ
Sbjct: 232 EWVIEDGKRAKDHMLEANLRLVVSVAKKYTDRGMSLLDVVQ 272
>gi|356524173|ref|XP_003530706.1| PREDICTED: uncharacterized protein LOC100813507 [Glycine max]
Length = 230
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 25/29 (86%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEK 29
+MA AAVIGLS GKRLLSSS++Y DI EK
Sbjct: 138 IMAIAAVIGLSGGKRLLSSSYHYFDIIEK 166
>gi|72161271|ref|YP_288928.1| sigma-70 factor [Thermobifida fusca YX]
gi|71915003|gb|AAZ54905.1| sigma-70 factor [Thermobifida fusca YX]
Length = 388
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT E V L+K I+ GL + KLR R G P+
Sbjct: 87 VHAYLREIGRVPLLTAEEEVELAKAIEIGL-YAEQKLRAA-RTGPVPAQYS--------- 135
Query: 253 PE----LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
PE L ++ E LA+ +L+ SN+RLV+S+A+RY G + DL+Q
Sbjct: 136 PEWFEDLNELVREGKLAKRRLIESNLRLVVSVAKRYLGRGLALLDLIQ 183
>gi|375101508|ref|ZP_09747771.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374662240|gb|EHR62118.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 343
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT E V L+K+I+ G+ H L L E R EL
Sbjct: 50 YLNGIGKTALLTAEEEVDLAKRIEAGV-FAQHVLDTSGDLSAE------------RRGEL 96
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+I+ + A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 97 AAIVRDGERAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQ 137
>gi|384147741|ref|YP_005530557.1| RNA polymerase sigma factor SigB [Amycolatopsis mediterranei S699]
gi|340525895|gb|AEK41100.1| RNA polymerase sigma factor SigB [Amycolatopsis mediterranei S699]
Length = 317
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL+ A+ V L+K+I+ G+ H L E L + R EL
Sbjct: 24 YLNGIGKTALLSAADEVELAKRIEAGV-FAQHMLDTGENLTTK------------RRTEL 70
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + +A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 71 AALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 111
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC-EPSMEQLAASLRIS 251
++ Y++ + LLTH E V L K+++ + L + + L+ G +PS + AA+ +S
Sbjct: 18 VRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLS 77
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ A+ K++ +N+RLV+S+A++Y D+ DL+Q
Sbjct: 78 IEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQ 122
>gi|213964561|ref|ZP_03392761.1| RNA polymerase sigma factor RpoD [Corynebacterium amycolatum SK46]
gi|213952754|gb|EEB64136.1| RNA polymerase sigma factor RpoD [Corynebacterium amycolatum SK46]
Length = 329
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL+ E V LSK+I+ G+ E ++ A R + ++
Sbjct: 36 YLNGIGKTALLSAEEEVELSKRIEAGVY-------------AEHLLQTGAKMTRAKKRDV 82
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + E AR L+ +N+RLV+S+A+RY N G + DL+Q
Sbjct: 83 KILAKEGKAARAHLLEANLRLVVSLAKRYTNRGMPLLDLIQ 123
>gi|381162242|ref|ZP_09871472.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
gi|379254147|gb|EHY88073.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
Length = 514
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+L+ +R
Sbjct: 212 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRVVEEEG-----EKLSTQMR- 264
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 265 --RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 308
>gi|72161811|ref|YP_289468.1| RNA polymerase sigma factor [Thermobifida fusca YX]
gi|71915543|gb|AAZ55445.1| RNA polymerase sigma factor [Thermobifida fusca YX]
Length = 438
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + ELLT + V L+K+I+ GL + +KL E P ++++ + R EL
Sbjct: 139 YLKAIGRRELLTAEQEVELAKRIEAGLYAE-YKLGWLEE---SPGPQEMSET---EREEL 191
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ I + A+ ++ +N+RLV+S+A++Y + G + D+VQ
Sbjct: 192 EWIAEDGRRAKAHMLEANLRLVVSVAKKYSDRGMPLLDVVQ 232
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRI----------------------SRPELQSILMECSLARE 267
RL +LG PS+E+ AA I + P+L+ I E A+E
Sbjct: 126 RLASQLGHRPSLERWAAEAHIALSELKPTLVAGKRSWAEVAGLTVPDLEQIQKEGLQAKE 185
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 186 HMIKANLRLVVSVAKKYQNRGLELLDLIQ 214
>gi|302534283|ref|ZP_07286625.1| RNA polymerase sigma factor RpoS [Streptomyces sp. C]
gi|302443178|gb|EFL14994.1| RNA polymerase sigma factor RpoS [Streptomyces sp. C]
Length = 361
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT AE V L+++++ GL + E+L ++ QLA
Sbjct: 65 FRQYLREIGRIPLLTAAEEVELARRVEAGLFAE-------EKLAGATDLDSQLAV----- 112
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ SN+RLV+S+A+RY G M DLVQ
Sbjct: 113 --DLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQ 155
>gi|427418169|ref|ZP_18908352.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760882|gb|EKV01735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 319
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 58/101 (57%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + LLT + V ++T ++++ K L LG EP++E + + ++ EL
Sbjct: 14 YLKEIGRVPLLTPEQEVTFGNAVRTLMTIETIKDGLVGSLGHEPTLEDWSKAANLTIEEL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + A+ ++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 74 KMAVEKGQRAKRQMVEANLRLVVSVAKKYLKRNVEILDLIQ 114
>gi|354615678|ref|ZP_09033420.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353219969|gb|EHB84465.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 347
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL+ E V L+K+I+ G+ H L E L E R EL
Sbjct: 54 YLNGIGRTALLSAQEEVDLAKRIEAGV-FAQHVLDTDEDLSRE------------RRLEL 100
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + +A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 101 AAVVRDGQVAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQ 141
>gi|451338960|ref|ZP_21909486.1| RNA polymerase sigma factor SigB [Amycolatopsis azurea DSM 43854]
gi|449418339|gb|EMD23930.1| RNA polymerase sigma factor SigB [Amycolatopsis azurea DSM 43854]
Length = 317
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL+ A+ V L+K+I+ G+ H L E G P R E+
Sbjct: 24 YLNGIGKTALLSAADEVELAKRIEAGV-FAQHMLDTTE--GLTPK----------RRSEM 70
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + +A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 71 SALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 111
>gi|288920765|ref|ZP_06415065.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288347841|gb|EFC82118.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 425
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL A+ V LSK+++ GL +HKL + E LA LR +L
Sbjct: 132 YLREIGKVPLLNAAQEVELSKRVEAGL-FAEHKLE---------TDEGLAEDLR---RDL 178
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + A+++LV +N+RLV+S+A++Y G + DLVQ
Sbjct: 179 GLLVTDGQAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 219
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 59/104 (56%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLTH E + K+++ ++L + + L+E L E + E+ A + +++
Sbjct: 20 VRTYLREIGRVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDRERTREEWAEAAQLTP 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ L A+ K++ +N+RLV++IA+ + DL+Q
Sbjct: 80 KQLQRDLQIGERAKRKMIEANLRLVVAIARNIKKRNLEFLDLIQ 123
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRPELQSILMECS 263
LL E V L+ ++ + ++ + +L+E L PS + A ++ ++ + + L
Sbjct: 75 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 134
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 135 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 167
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC-EPSMEQLAASLRIS 251
++ Y++ + LLTH E V L K+++ + L + + L+ G +PS + AA+ +S
Sbjct: 12 VRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLS 71
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ A+ K++ +N+RLV+S+A++Y D+ DL+Q
Sbjct: 72 IEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQ 116
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC-EPSMEQLAASLRIS 251
++ Y++ + LLTH E V L K+++ + L + + L+ G +PS + AA+ +S
Sbjct: 12 VRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLS 71
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ A+ K++ +N+RLV+S+A++Y D+ DL+Q
Sbjct: 72 IEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQ 116
>gi|434393099|ref|YP_007128046.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
gi|428264940|gb|AFZ30886.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
Length = 413
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILM----------------------ECSLARE 267
RL LG PS+E+ A S I EL+ +L+ E + A+E
Sbjct: 117 RLTSELGHRPSLERWATSAGIEVAELKPLLIKGKRRWAEITGLTVQELEQIQSEGNRAKE 176
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 177 HMIKANLRLVVSVAKKYQNRGLELLDLVQ 205
>gi|384566576|ref|ZP_10013680.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
gi|384522430|gb|EIE99625.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
Length = 439
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL E V L+K+I+ GL + +LR+ E G E+L+ +R
Sbjct: 139 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RLRVAEEEG-----EKLSTQMR--- 189
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 190 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 233
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRPELQSILMECS 263
LL E V L+ ++ + ++ + +L+E L PS + A ++ ++ + + L
Sbjct: 69 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 128
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 129 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 161
>gi|354617029|ref|ZP_09034545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353218616|gb|EHB83339.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 464
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + ++R+ E G E+L+ +R
Sbjct: 162 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RIRVTEEEG-----EKLSTQMR- 214
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 215 --RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 258
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + L + + EP AA++
Sbjct: 65 EDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVD 124
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 125 MPLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 171
>gi|383823563|ref|ZP_09978753.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
gi|383338842|gb|EID17201.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
Length = 319
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL A+ V L+K+I+ GL + L ++RLG + EL
Sbjct: 26 YLNGIGKTALLNAADEVELAKRIEAGLYAQ-YLLETRKRLGEN------------RKREL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 AMVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|381162257|ref|ZP_09871487.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
gi|379254162|gb|EHY88088.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
Length = 343
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ G+ H L + L E R EL
Sbjct: 50 YLNGIGKTALLTAAQEVDLAKRIEAGV-FARHMLDTSDDLSRE------------RRAEL 96
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ + A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 97 AMIVRDGEQAKTHLLQANLRLVVSLAKRYTGRGMPLLDLIQ 137
>gi|428203439|ref|YP_007082028.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427980871|gb|AFY78471.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 407
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 23/95 (24%)
Query: 224 LDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL------------------- 264
+D H RL +LG PS+E+ AA+++++ EL+ L E
Sbjct: 106 VDTHD-RLVSQLGLRPSLERWAAAVKMNVFELKQALTEGKRHWAEIAGMDVQELDRIQKA 164
Query: 265 ---AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+E ++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 165 GIRAKEHMIEANLRLVVSVAKKYQNRGLELLDLIQ 199
>gi|407275570|ref|ZP_11104040.1| RNA polymerase sigma factor SigB [Rhodococcus sp. P14]
gi|452960741|gb|EME66056.1| RNA polymerase sigma factor SigB [Rhodococcus ruber BKS 20-38]
Length = 320
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL+ A+ V L+K+I+ GL H L K+RL AA R +L
Sbjct: 27 YLNGIGRTALLSAADEVELAKRIEAGLYAQ-HLLETKKRL--------TAAKKR----DL 73
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 74 AILVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 114
>gi|378717650|ref|YP_005282539.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
gi|375752353|gb|AFA73173.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
Length = 339
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L ++RL AA R +L
Sbjct: 46 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HVLATRKRLS--------AAKKR----DL 92
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 93 NTVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 133
>gi|336179421|ref|YP_004584796.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334860401|gb|AEH10875.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 425
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL A+ V LSK+++ GL ++KL L E R +L
Sbjct: 132 YLREIGKVPLLNAAQEVELSKRVEAGL-FAEYKLDTDTDLAPE------------LRRDL 178
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q+++ + A+++LV +N+RLV+S+A++Y G + DLVQ
Sbjct: 179 QTLVRDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 219
>gi|418463311|ref|ZP_13034327.1| RNA polymerase sigma factor SigB [Saccharomonospora azurea SZMC
14600]
gi|359733714|gb|EHK82704.1| RNA polymerase sigma factor SigB [Saccharomonospora azurea SZMC
14600]
Length = 313
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ G+ H L + L E R EL
Sbjct: 20 YLNGIGKTALLTAAQEVDLAKRIEAGV-FARHMLDTSDDLSRE------------RRAEL 66
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ + A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 67 AMIVRDGEQAKTHLLQANLRLVVSLAKRYTGRGMPLLDLIQ 107
>gi|359767854|ref|ZP_09271636.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
gi|359314770|dbj|GAB24469.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
Length = 339
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L ++RL AA R +L
Sbjct: 46 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HVLATRKRLS--------AAKKR----DL 92
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 93 NTVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 133
>gi|352095348|ref|ZP_08956451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679359|gb|EHA62501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 335
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP-SMEQLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + LK++ G + + E++A + +S
Sbjct: 27 VRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVS 86
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 87 AAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|456390566|gb|EMF55961.1| hrdA protein [Streptomyces bottropensis ATCC 25435]
Length = 405
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT E V L+++++ GL +ERLG ++ A
Sbjct: 109 FRQYLREIGRIPLLTAVEEVELARRVEAGLFA-------EERLGNASDLDTRLAL----- 156
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 157 -DLDKLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 199
>gi|411117153|ref|ZP_11389640.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
gi|410713256|gb|EKQ70757.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
Length = 414
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASL----------------------RISRPELQSILMECSLARE 267
RL LG PS+E+ A ++S EL++I ME A+E
Sbjct: 118 RLTAHLGHRPSLERWATEAGVTVADLKPIMAEGKREWAKVAKLSVEELETIQMEGIRAKE 177
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 178 HMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|406965702|gb|EKD91309.1| hypothetical protein ACD_30C00025G0003 [uncultured bacterium]
Length = 327
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + S LLT + V L+K+I+ G D + C+ + A LR+ + E
Sbjct: 38 YLNEIGSTTLLTAEQEVELAKRIEAGRFAKDERF-------CKEELLPKAEKLRLVKAE- 89
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E AR++L N++LV+S+A+RY + G + DL+Q
Sbjct: 90 ----EEGERARDELAEKNLKLVVSVARRYKDRGLPLGDLIQ 126
>gi|186682180|ref|YP_001865376.1| SigH/RpoD family RNA polymerase sigma factor [Nostoc punctiforme
PCC 73102]
gi|186464632|gb|ACC80433.1| RNA polymerase, sigma 70 subunit SigH, RpoD family [Nostoc
punctiforme PCC 73102]
Length = 321
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 59/104 (56%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT + + +++++ +++ +L L P++ + A +++S
Sbjct: 22 VRAYLKEIGRIPLLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQLSE 81
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL L + A+ K++ +N+RLV+SIA++Y ++ DL+Q
Sbjct: 82 QELLQQLNQGKKAKHKMITANLRLVVSIAKQYQRRNLELMDLIQ 125
>gi|219130701|ref|XP_002185497.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403028|gb|EEC42984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 329
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR--I 250
++ Y+K + + ELL E + L ++++ + + + +L+ L P+ ++ A ++ +
Sbjct: 3 IRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEWATKIQPDM 62
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
P+L+ + A+ L SN+RLV+SIA+RY + G DL Q
Sbjct: 63 MVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQ 108
>gi|158313089|ref|YP_001505597.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158108494|gb|ABW10691.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 423
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL A+ V LSK+++ GL +HKL + + LA LR +L
Sbjct: 130 YLREIGKVPLLNAAQEVELSKRVEAGL-FAEHKL---------DTDQDLADDLR---RDL 176
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + A+++LV +N+RLV+S+A++Y G + DLVQ
Sbjct: 177 GVLVTDGQAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 217
>gi|282895449|ref|ZP_06303586.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199482|gb|EFA74345.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 327
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 60/109 (55%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y++ + LL + + K+++ + L + K L + LG EPS+ + A
Sbjct: 15 LTADMVRTYLREIGRVPLLNREQEIIYGKQVQQMMILVEAKEALAKELGYEPSLSEWAIY 74
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ S +L+ + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 75 VNQSENDLKHKISTGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|210633964|ref|ZP_03297935.1| hypothetical protein COLSTE_01853 [Collinsella stercoris DSM 13279]
gi|210159008|gb|EEA89979.1| RNA polymerase sigma factor RpoD [Collinsella stercoris DSM 13279]
Length = 445
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 15/104 (14%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + +LLT AE V L+ KI+ GL D KL +E A + ++R E+
Sbjct: 146 YLKEIGKVDLLTAAEEVDLAMKIEAGLDAAD-KLEKQE-----------AGEIELTRAEM 193
Query: 256 QSILM--ECSL-AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ + L A++ L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 194 RRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQ 237
>gi|229815176|ref|ZP_04445512.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
gi|229809186|gb|EEP44952.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
Length = 448
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 15/112 (13%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y+K + +LLT AE V L+ KI+ GL D KL +E A
Sbjct: 141 LTGDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAAD-KLEKQE-----------AGE 188
Query: 248 LRISRPELQSILM--ECSL-AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++R E++ ++ + L A++ L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 189 IELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQ 240
>gi|2564653|gb|AAC45358.1| group 2 alternative sigma factor [Nostoc punctiforme PCC 73102]
Length = 321
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 59/104 (56%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LLT + + +++++ +++ +L L P++ + A +++S
Sbjct: 22 VRAYLKEIGRIPLLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQLSE 81
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL L + A+ K++ +N+RLV+SIA++Y ++ DL+Q
Sbjct: 82 QELLQQLNQGKKAKHKMITANLRLVVSIAKQYQRRNLELMDLIQ 125
>gi|383831189|ref|ZP_09986278.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
gi|383463842|gb|EID55932.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
Length = 343
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT E V L+K+I+ G+ H L + L E R EL
Sbjct: 50 YLNGIGKTALLTADEEVDLAKRIEAGV-FAQHMLDTSDDLPRE------------RRAEL 96
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 97 AAVVRDGERAKTHLLQANLRLVVSLAKRYTGRGMPLLDLIQ 137
>gi|357389445|ref|YP_004904284.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
gi|311895920|dbj|BAJ28328.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
Length = 389
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ Y++ + LLT E V L++ I+ GL ++ R+ P+ E+L
Sbjct: 87 LRQYLREIGRVRLLTAVEEVELARAIEAGLFAEEALDRVPPAAERRPADERLLG------ 140
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 141 -DLDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTLLDLIQ 183
>gi|37520903|ref|NP_924280.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35211898|dbj|BAC89275.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 350
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL AE + L+++I T LSL++ + + + + E +E S ++ +
Sbjct: 45 YLQEIGRVALLKPAEEIELARRIATWLSLEEKRSKFQA-VAAESWLE----SANLTPQQW 99
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+I+ E A+ LV +N+RLV+S+A++Y G + DL+Q
Sbjct: 100 STIVREGERAKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQ 140
>gi|375094942|ref|ZP_09741207.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655675|gb|EHR50508.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 346
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT E V L+K+I+ G+ H L E L P R R EL
Sbjct: 53 YLNGIGKTALLTAEEEVDLAKRIEAGV-FAQHVLDTAEDL---P---------RQRRVEL 99
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 100 TALVRDGQRAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQ 140
>gi|87123242|ref|ZP_01079093.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86168962|gb|EAQ70218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 309
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE--PSMEQLAASLRI 250
++ Y++ + LL+H + + L ++++ + L+ + L+++ G E P+ E LA + +
Sbjct: 1 MRSYLRDIGRVPLLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAE-LATAAGL 59
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S +L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 60 SALQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 105
>gi|3077740|dbj|BAA25788.1| SigC [Cyanidium caldarium]
Length = 424
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
YV+ + + LT EV LS + +L + L +LG EP+ + + ++ +S E
Sbjct: 73 AYVREICRLDRLTDEEVASLSLATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEE 132
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRY 284
+++ + AR +LV SN+RLV++IA RY
Sbjct: 133 VRNEIERGRRARARLVASNLRLVLAIANRY 162
>gi|352093658|ref|ZP_08954829.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679998|gb|EHA63130.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 321
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP-SMEQLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + LK++ G + + E++A + +S
Sbjct: 13 VRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVS 72
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 73 AAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|383782051|ref|YP_005466618.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
gi|381375284|dbj|BAL92102.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
Length = 282
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 16/92 (17%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
+LT E V LSK+I+ GL + E+L P+ +LA P L I+ E
Sbjct: 1 MLTAVEEVTLSKRIEAGLYAE-------EKLSAAPA--ELA-------PLLAVIVAEGKA 44
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 45 AKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 76
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE-RLGCEPSMEQLAASLRIS 251
++ Y++ + LL+H + + L ++++ + L+ + LK+ R G E + ++ A + +S
Sbjct: 10 VRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMS 69
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 70 AAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 114
>gi|312195044|ref|YP_004015105.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311226380|gb|ADP79235.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 424
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL A+ V LSK+++ GL +HKL L EP + + +L
Sbjct: 131 YLREIGRVPLLNAAQEVELSKRVEAGL-FAEHKLATAADL--EPELHR----------DL 177
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ + A+++LV +N+RLV+S+A++Y G + DLVQ
Sbjct: 178 KLLVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 218
>gi|374990114|ref|YP_004965609.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
gi|297160766|gb|ADI10478.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
Length = 453
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LL+ AE V L+++++ GL + E+L P ++ QLA
Sbjct: 157 FRQYLREIGRIPLLSAAEEVELARRVEAGLFAE-------EKLSNTPDLDTQLAH----- 204
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 205 --DFDQLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 247
>gi|443673296|ref|ZP_21138364.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
gi|443414111|emb|CCQ16702.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
Length = 323
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT AE V L+K+I+ GL + +E + + L
Sbjct: 30 YLNGIGRTALLTAAEEVDLAKRIEAGLY-------------AKQVLENTKRLSAVKKRNL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ + S AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 77 AIIVRDGSSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L+++I L L+ + E LG P+ E+ A +
Sbjct: 79 EDSIRVYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRATQIEHLGRIPTDEEWAIACD 138
Query: 250 ISRPELQSILMECSLAR---EKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I P ++ + R +K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 139 I--PNMRQFNRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|269925235|ref|YP_003321858.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269788895|gb|ACZ41036.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobaculum
terrenum ATCC BAA-798]
Length = 344
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 180 LRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239
L + ELI + L Y++ + +LLT E V L++ I+ G
Sbjct: 36 LEEEMDRELIGDSLGIYLREIGRAQLLTAEEEVALAQAIERG-----------------Q 78
Query: 240 SMEQLAASLRISRPELQSI---LMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EQ S IS EL + + E AR KL+ N+RLV+SIA+RY G +ADL++
Sbjct: 79 EAEQRLQSDDISPEELDDLKKAVEEGKAARHKLIEHNLRLVVSIARRYVGHGMPLADLIE 138
>gi|87124760|ref|ZP_01080608.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86167639|gb|EAQ68898.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 321
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE--PSMEQLAASLRI 250
++ Y++ + LL+H + + L ++++ + L+ + L+++ G E P+ E LA + +
Sbjct: 13 VRSYLRDIGRVPLLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAE-LATAAGL 71
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
S +L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 72 SALQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L+++I L L+ + L E LG P+ E+ A +
Sbjct: 74 EDSIRVYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRSTLIEHLGRVPTDEEWAIASD 133
Query: 250 ISRPELQSILMECSLAR---EKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ P ++ + R +K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 134 M--PNMRQFNRRLHIGRKAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 181
>gi|254423226|ref|ZP_05036944.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190715|gb|EDX85679.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 431
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 22/101 (21%)
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILM----------------- 260
+ T + L + + RL +LG PS+E+ A + + P+L+ L
Sbjct: 123 LATYVHLLNTRARLTAQLGHRPSLERWAKASGVDMPDLKPTLAQGKRLWAEIAGMSVEEI 182
Query: 261 -----ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E + A+E ++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 183 VEIQNEGTRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 223
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 178 KQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC 237
K+L+ ++P G + + LLT + V S+ I+ L L+ + + +
Sbjct: 207 KRLKGCLTP-------LGCLYKMTGPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAG 259
Query: 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EP+ Q AA+ L+ L + ++V SNVRLV+SIA+ ++ G + +DL+Q
Sbjct: 260 EPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQ 318
>gi|427701550|ref|YP_007044772.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344718|gb|AFY27431.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 335
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCE-PSMEQLAASLRIS 251
L+ Y++ + LL+H + + L ++++ + L++ + L R G E PS E LAA ++
Sbjct: 27 LRSYLRDIGRVPLLSHEQEITLGRQVQELMVLEELREELTLRSGGEEPSPELLAAEAGLT 86
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L A+E++V +N+RLV+S+A++Y ++ DL+Q
Sbjct: 87 PALLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|389865571|ref|YP_006367812.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
gi|388487775|emb|CCH89337.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
Length = 447
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 13/108 (12%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG--CEPSMEQLAASL 248
+ ++ Y+K + LLT E V L+K+I+ GL +LR E G P M
Sbjct: 145 DSVRAYLKQIGKVALLTAEEEVDLAKRIEAGL-YGAERLRQVEEEGQKLSPQM------- 196
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R +L I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 197 ---RRDLNWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 241
>gi|404214750|ref|YP_006668945.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
gi|403645549|gb|AFR48789.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
Length = 338
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L K+RL AA R +L
Sbjct: 45 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HVLATKKRLS--------AAKKR----DL 91
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 92 AVVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 132
>gi|403730463|ref|ZP_10949020.1| RNA polymerase sigma factor SigB [Gordonia rhizosphera NBRC 16068]
gi|403202499|dbj|GAB93351.1| RNA polymerase sigma factor SigB [Gordonia rhizosphera NBRC 16068]
Length = 339
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L ++RL + +L
Sbjct: 46 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HVLETRKRLSA------------TRKRDL 92
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 93 AIIVREGEYARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 133
>gi|148243538|ref|YP_001228695.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851848|emb|CAK29342.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 370
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 29/111 (26%)
Query: 208 HAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS-------------------- 247
H +V RL +L++ +LR +LG +PS Q A +
Sbjct: 59 HPDVARLE-------ALEEQRLRETSKLGHQPSQSQWAQACGLSAGELRAQVQAGNKAWA 111
Query: 248 --LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L +S +LQ L+ A+E+++ +N+RLV+++A++Y + G ++ DLVQ
Sbjct: 112 ELLDMSPGDLQRQLLHGRRAKERMIQANLRLVVAVAKKYQHRGMELLDLVQ 162
>gi|94985446|ref|YP_604810.1| RNA polymerase subunit sigma 28 [Deinococcus geothermalis DSM
11300]
gi|94555727|gb|ABF45641.1| RNA polymerase, sigma 28 subunit [Deinococcus geothermalis DSM
11300]
Length = 403
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 14/113 (12%)
Query: 185 SPELIQ-NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243
SP L Q + L+ Y+ + LLT AE + L+++ + G + ++ L P ++
Sbjct: 95 SPALSQGDSLRQYLHEIGRVPLLTVAEEMDLARRYEEGEAA-------RQALDSNPDLDD 147
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+R +LQ + + + A++ L+ +N+RLV+SIA+RY N G + DL+Q
Sbjct: 148 R------TRRQLQRQVEDGAAAKQALIEANLRLVVSIAKRYTNRGLGLLDLIQ 194
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 178 KQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC 237
K+L+ ++P G + + LLT + V S+ I+ L L+ + + +
Sbjct: 206 KRLKGCLTP-------LGCLYKMTGPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAG 258
Query: 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EP+ Q AA+ L+ L + ++V SNVRLV+SIA+ ++ G + +DL+Q
Sbjct: 259 EPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQ 317
>gi|395772635|ref|ZP_10453150.1| RNA polymerase sigma factor [Streptomyces acidiscabies 84-104]
Length = 362
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLRIS 251
+ Y++ + LLT E V L+++++ GL + E+L P ++ QLA
Sbjct: 66 FRQYLREIGRIPLLTAVEEVELARRVEAGLFAE-------EKLLNTPDLDSQLAL----- 113
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 114 --DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 156
>gi|357413573|ref|YP_004925309.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
flavogriseus ATCC 33331]
gi|320010942|gb|ADW05792.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
flavogriseus ATCC 33331]
Length = 358
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LL+ A+ V L+++++ GL + ERL P + A
Sbjct: 62 FRQYLREIGRIPLLSAADEVELARRVEAGLFAE-------ERLAGTPDPDSGLAV----- 109
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 110 -DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 152
>gi|418053337|ref|ZP_12691407.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
gi|353178512|gb|EHB44091.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
Length = 319
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT + V L+K+I+ GL H L ++RL + +L
Sbjct: 26 YLNGIGKTALLTAEDEVELAKRIEAGL-FAAHLLETRKRLSDN------------RKRDL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 73 AIIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|111225055|ref|YP_715849.1| alternative primary sigma 70 transcriptional factor [Frankia alni
ACN14a]
gi|111152587|emb|CAJ64329.1| Alternative primary sigma 70 transcriptional factor [Frankia alni
ACN14a]
Length = 373
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL A+ V LSK+++ GL +HKL +P L A LR +L
Sbjct: 80 YLREIGKVPLLNAAQEVELSKRVEAGL-FAEHKLE------SDPD---LPADLR---RDL 126
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + A+++LV +N+RLV+S+A++Y G + DLVQ
Sbjct: 127 GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 167
>gi|386386524|ref|ZP_10071665.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
gi|385666011|gb|EIF89613.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
Length = 409
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 16/106 (15%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ--LAASLRI 250
+ Y++ + LLT AE V L++ ++ GL + E+L P + LAA
Sbjct: 112 FRQYLREIGRIPLLTAAEEVELARCVEAGLFAE-------EKLAGTPDLNDSPLAA---- 160
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 161 ---DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 203
>gi|297625160|ref|YP_003706594.1| RpoD subfamily RNA polymerase sigma-70 subunit [Truepera
radiovictrix DSM 17093]
gi|297166340|gb|ADI16051.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Truepera
radiovictrix DSM 17093]
Length = 446
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLT E + L+++I+ G + + RL E P EQ A
Sbjct: 146 VRQYLHEIGRVSLLTLEEEISLARRIEEGEAA---QKRLDEEGDSLPEREQRA------- 195
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ I+ + +AR+ L+ +N+RLV+SIA++Y G DL+Q
Sbjct: 196 --LKRIVEDGEMARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQ 237
>gi|50954703|ref|YP_061991.1| RNA polymerase sigma factor [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951185|gb|AAT88886.1| RNA polymerase, sigma-70 family factor [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 440
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+ +I+ GL +D RL P+M + + R
Sbjct: 144 VKDYLKQIGKVPLLNAAEEVELAMRIEAGLFAED-------RLANTPNMPR-----ELER 191
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 192 -ELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQ 234
>gi|385682350|ref|ZP_10056278.1| RNA polymerase sigma factor SigB [Amycolatopsis sp. ATCC 39116]
Length = 341
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL+ A+ V L+K+I+ G+ H L +L + R EL
Sbjct: 48 YLNGIGKTALLSAADEVELAKRIEAGV-FAQHMLDTAPKLSPQ------------RRKEL 94
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++++ + A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 95 EALVRDGHKAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 135
>gi|113475621|ref|YP_721682.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166669|gb|ABG51209.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 410
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSL----------------------ARE 267
RL RLG +PS E+ + +S EL+ I+ L AR
Sbjct: 114 RLAARLGHKPSFERWLKAGNLSMAELKEIIAVGKLRWAKLTGLNVKELEQIQTEGIEARH 173
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ +N+RLV+SIA++Y N G ++ DL+Q
Sbjct: 174 QMISTNLRLVVSIAKKYQNRGVELLDLIQ 202
>gi|320159820|ref|YP_004173044.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319993673|dbj|BAJ62444.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 396
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + LL+ E V L+K+I+ G + R RL + R EL
Sbjct: 102 YLKEMSRVPLLSSEEEVELAKRIERGRAAKKELTRNSARLSPQ------------RRGEL 149
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + + ARE L+ +N RLV+SIA+RY G DL+Q
Sbjct: 150 EAQIQDGESAREHLIKANTRLVVSIAKRYIGRGVPFLDLIQ 190
>gi|25991936|gb|AAN76995.1|AF481769_1 primary sigma 70 transcriptional factor [Frankia sp. ACN14a]
Length = 385
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL A+ V LSK+++ GL +HKL +P L A LR +L
Sbjct: 92 YLREIGKVPLLNAAQEVELSKRVEAGL-FAEHKLE------SDPD---LPADLR---RDL 138
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + A+++LV +N+RLV+S+A++Y G + DLVQ
Sbjct: 139 GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 179
>gi|452821128|gb|EME28162.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 670
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 17/108 (15%)
Query: 191 NRLKGYVKGVVSEEL--LTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
NRL + V+ EE+ LT E VR +D L+ ++G P + A
Sbjct: 354 NRLSLVEEKVICEEIARLTRLEAVR-----------ED----LRRKMGRLPRENEWAWEA 398
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+S EL+ L++ A+ ++V +N+RLV+ A+RY N G DLVQ
Sbjct: 399 NLSVSELRGKLIKGRRAKNRMVAANLRLVICFAKRYRNRGVAFQDLVQ 446
>gi|452948582|gb|EME54060.1| RNA polymerase sigma factor SigB [Amycolatopsis decaplanina DSM
44594]
Length = 317
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL+ A+ V L+K+I+ G+ H L E G P R E+
Sbjct: 24 YLNGIGKTALLSAADEVELAKRIEAGV-FAQHMLDTAE--GLTPK----------RRSEM 70
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 71 SALVRDGHSAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 111
>gi|357399134|ref|YP_004911059.1| RNA polymerase principal sigma factor hrdA [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|386355181|ref|YP_006053427.1| RNA polymerase sigma factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|337765543|emb|CCB74252.1| RNA polymerase principal sigma factor hrdA [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|365805689|gb|AEW93905.1| RNA polymerase sigma factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 393
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+ Y++ + LLT E V L+++++ GL + E+L P ++ A
Sbjct: 97 FRQYLREIGRIPLLTAEEEVELARRVEAGLFAE-------EKLEHTPDLDTRLAG----- 144
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L +++ +A+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 145 -DLDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 187
>gi|219849586|ref|YP_002464019.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219543845|gb|ACL25583.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 314
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + +E LLT + +L++ I G R ERL EPS+ + L
Sbjct: 18 YLNEIGAEPLLTFEQEQQLAQTIAQGR-------RAAERLTNEPSLHS------TEKKRL 64
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + AR +L+ SN+RLV+SIA+RY G + DL+Q
Sbjct: 65 AAQVAAGEQARAQLINSNLRLVVSIARRYQGHGLTLLDLIQ 105
>gi|158340842|ref|YP_001522010.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158311083|gb|ABW32696.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 299
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 22/104 (21%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L Y+ + LLTHAE V L ++I++ L+ P IS+
Sbjct: 12 LGAYLTRMGGYSLLTHAEEVSLGQQIQSALN---------------PPQG-------ISQ 49
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL I A+ +++ N+RLV++IA++Y G D+ DL+Q
Sbjct: 50 AELDQIQKRGKRAKHRMICGNLRLVVTIAKKYQKRGMDLIDLIQ 93
>gi|414077595|ref|YP_006996913.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
gi|413971011|gb|AFW95100.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
Length = 411
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRP----------------------ELQSILMECSLARE 267
RLK LG PS+E+ A + IS P EL+ + + A+
Sbjct: 115 RLKAELGHRPSLERWATTAGISLPDLKPTLANGKRRWAEIANLTVEELEQVQTQGLQAKS 174
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 175 HMIKANLRLVVSVAKKYQNRGLELLDLVQ 203
>gi|377567675|ref|ZP_09796883.1| RNA polymerase sigma factor SigB [Gordonia terrae NBRC 100016]
gi|377535215|dbj|GAB42048.1| RNA polymerase sigma factor SigB [Gordonia terrae NBRC 100016]
Length = 338
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L K+RL AA R +L
Sbjct: 45 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HVLANKKRLS--------AAKKR----DL 91
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 92 AVIVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 132
>gi|377562738|ref|ZP_09792106.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
gi|377530035|dbj|GAB37271.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
Length = 336
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L ++RL AA R +L
Sbjct: 43 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HVLATRKRLS--------AAKKR----DL 89
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ E +AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 90 TIVVREGEVARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 130
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRPELQSILMECS 263
LL E + L+ ++ + + + +L E L P+ Q A ++ S+ + ++ L
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|379707440|ref|YP_005262645.1| RNA polymerase principal sigma factor hrdA [Nocardia
cyriacigeorgica GUH-2]
gi|374844939|emb|CCF62003.1| RNA polymerase principal sigma factor hrdA [Nocardia
cyriacigeorgica GUH-2]
Length = 319
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+ E V L+++I G+ + RL E G P+ R
Sbjct: 24 IRDYLRAIGRTPLLSAEEEVALAERIAAGVL---ARQRLDEAGGLPPA----------ER 70
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRY-DNMGADMADLVQ 296
L+ + + + A+E ++ +N+RLV+SIA+RY N G + DLVQ
Sbjct: 71 RALRRTVADGARAKEHMIQANLRLVVSIARRYPTNTGMSLLDLVQ 115
>gi|334563830|ref|ZP_08516821.1| RNA polymerase sigma factor SigB [Corynebacterium bovis DSM 20582]
Length = 332
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT + V LSK+I+ GL H L E L R + +L
Sbjct: 39 YLNGIGKTALLTAEDEVELSKRIEVGLYAQ-HILDSGETL------------TRARKRDL 85
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 86 KVLAREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 126
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 60/109 (55%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS 247
L + ++ Y++ + LL + + K+++ + L + K L + LG EPS+ + A
Sbjct: 15 LTADMVRTYLREIGRVPLLNREQEIIYGKQVQQMMLLLEVKEALTKELGYEPSLSEWAIY 74
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ S +L+ + A++K++ +N+RLV++IA++Y + DL+Q
Sbjct: 75 VNQSENDLKHKISTGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|333919424|ref|YP_004493005.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481645|gb|AEF40205.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length = 327
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT A+ V L+K+I+ GL H L+ +L P+ ++ +L
Sbjct: 34 YLNGIGRTALLTAADEVELAKRIEAGLYAT-HILQTAPKL--TPAKKR----------DL 80
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 81 AYIVRDGQKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 121
>gi|433603618|ref|YP_007035987.1| RNA polymerase sigma factor rpoD [Saccharothrix espanaensis DSM
44229]
gi|407881471|emb|CCH29114.1| RNA polymerase sigma factor rpoD [Saccharothrix espanaensis DSM
44229]
Length = 435
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + R E E+L LR
Sbjct: 133 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERVRR------AEEESEKLTPQLR- 185
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 186 --RDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 229
>gi|359461563|ref|ZP_09250126.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 299
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 22/104 (21%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L Y+ + LLTHAE V L ++I++ L+ P IS+
Sbjct: 12 LGAYLTRMGGYSLLTHAEEVSLGQQIQSALN--------------PPKG--------ISQ 49
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL I A+ +++ N+RLV++IA++Y G D+ DL+Q
Sbjct: 50 AELDQIQKRGQRAKHRMICGNLRLVVTIAKKYQKRGMDLIDLIQ 93
>gi|336117837|ref|YP_004572605.1| RNA polymerase sigma factor [Microlunatus phosphovorus NM-1]
gi|334685617|dbj|BAK35202.1| RNA polymerase sigma factor [Microlunatus phosphovorus NM-1]
Length = 317
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++G+ LLT AE V L+K I+ GL + K R G S E+ + + EL
Sbjct: 23 YLEGIAKTPLLTAAEEVELAKTIEVGLYAE------KIRSGMVTSAERGDNPSQPTEEEL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + A ++ V +N+RLV+S+A++Y + DLVQ
Sbjct: 77 DFLIEDGRRALQRFVTANLRLVVSVARKYGRSQMPLLDLVQ 117
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 178 KQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC 237
K+L+ ++P G + + LLT + V S+ I+ L L+ + + +
Sbjct: 107 KRLKGCLTP-------LGCLYKMTGPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAG 159
Query: 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EP+ Q AA+ L+ L + ++V SNVRLV+SIA+ ++ G + +DL+Q
Sbjct: 160 EPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQ 218
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRPELQSILMECS 263
LL E + L+ ++ + + + +L E L P+ Q A ++ S+ + ++ L
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|126659670|ref|ZP_01730799.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126619015|gb|EAZ89755.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 369
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRPELQSILMECS 263
LL E V L+ ++ + ++ + +L+E L P+ + ++ ++ + + L
Sbjct: 70 LLNAQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGR 129
Query: 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 130 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 162
>gi|453363975|dbj|GAC80290.1| RNA polymerase sigma factor SigB [Gordonia malaquae NBRC 108250]
Length = 332
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L K+RL AA R +L
Sbjct: 39 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HLLATKKRL--------TAAKKR----DL 85
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 86 NIIAREGDAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 126
>gi|312139434|ref|YP_004006770.1| sigma-70 factor siga [Rhodococcus equi 103S]
gi|325672677|ref|ZP_08152373.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
gi|311888773|emb|CBH48085.1| sigma-70 factor SigA [Rhodococcus equi 103S]
gi|325556554|gb|EGD26220.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
Length = 459
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL E V L+K+I+ GL HK+ G +PS R
Sbjct: 159 VRAYLKQIGKVALLNAEEEVELAKRIEAGL-FATHKMNEMAEKGEKPSP--------TDR 209
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 210 RNLNWITRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 253
>gi|333919432|ref|YP_004493013.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481653|gb|AEF40213.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length = 503
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + R E + E++A LR
Sbjct: 201 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFAAEKMRRFAE------AGEKVAPPLRQ 254
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ L ++ + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 255 N---LSWVVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 297
>gi|262202171|ref|YP_003273379.1| sigma-70 family RNA polymerase sigma factor [Gordonia bronchialis
DSM 43247]
gi|262085518|gb|ACY21486.1| RNA polymerase sigma factor, sigma-70 family [Gordonia bronchialis
DSM 43247]
Length = 337
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L K+RL AA R +L
Sbjct: 44 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HVLATKKRLS--------AAKKR----DL 90
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 91 AIVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 131
>gi|383776221|ref|YP_005460787.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
gi|381369453|dbj|BAL86271.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
Length = 333
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL V LS+ I+ GL E +EQ +SR EL
Sbjct: 42 YLHEISRTPLLDAEREVELSRTIEAGLY-------------AEHLLEQGEERRGVSREEL 88
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ E A++ + +N+RLV+SIA+RY G M DL+Q
Sbjct: 89 ERLVTEGQRAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQ 129
>gi|260906263|ref|ZP_05914585.1| RNA polymerase, sigma 32 subunit, RpoH [Brevibacterium linens BL2]
Length = 903
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + LL+ AE V ++K+I+ G+ H L L + R R L
Sbjct: 582 YLKQIGQYPLLSAAEEVAVAKRIEAGM-YATHVLSLGQY------------QTRRERRAL 628
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + + A E++V SN+RLV+SIA+R++ D+ DL+Q
Sbjct: 629 EWVKADGAAAYEEMVTSNLRLVVSIAKRFNRSKLDLLDLIQ 669
>gi|302525743|ref|ZP_07278085.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434638|gb|EFL06454.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length = 476
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL E V L+K+I+ GL + ++R E G E+L +R
Sbjct: 176 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RVRTAEEEG-----EKLVTQMR--- 226
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 227 RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 270
>gi|68536171|ref|YP_250876.1| RNA polymerase sigma factor SigB [Corynebacterium jeikeium K411]
gi|260578869|ref|ZP_05846775.1| RNA polymerase principal sigma factor SigB [Corynebacterium
jeikeium ATCC 43734]
gi|68263770|emb|CAI37258.1| RNA polymerase sigma factor B [Corynebacterium jeikeium K411]
gi|258603016|gb|EEW16287.1| RNA polymerase principal sigma factor SigB [Corynebacterium
jeikeium ATCC 43734]
Length = 343
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT + V LSK+I+ GL ++ L E+L R + +L
Sbjct: 50 YLNGIGKTALLTAEDEVELSKRIEVGL-YSEYLLSNAEKL------------TRAKKRDL 96
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 97 KVLAREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 137
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 178 KQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGC 237
K+L+ SP ++ G+ LLT + V S+ I+ L L+ + L G
Sbjct: 219 KRLKGCRSPLGCFYKMTGW-------RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGG 271
Query: 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EP+ Q A + L+ L + +V SNVRLV+SIA+ ++ G + +DL+Q
Sbjct: 272 EPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 330
>gi|373495785|ref|ZP_09586338.1| sigma-70 family RNA polymerase sigma factor [Fusobacterium sp.
12_1B]
gi|404368232|ref|ZP_10973589.1| sigma-70 family RNA polymerase sigma factor [Fusobacterium ulcerans
ATCC 49185]
gi|313690124|gb|EFS26959.1| sigma-70 family RNA polymerase sigma factor [Fusobacterium ulcerans
ATCC 49185]
gi|371966914|gb|EHO84392.1| sigma-70 family RNA polymerase sigma factor [Fusobacterium sp.
12_1B]
Length = 260
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 27/32 (84%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+EKLV SN+RLV+SIA++Y NMG + DL+Q
Sbjct: 36 AQEKLVTSNLRLVISIARKYTNMGIPLLDLIQ 67
>gi|291301996|ref|YP_003513274.1| RpoD subfamily RNA polymerase sigma-70 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290571216|gb|ADD44181.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stackebrandtia
nassauensis DSM 44728]
Length = 559
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL A+ V L+K+I+ GL + +LKE + E++ +R
Sbjct: 257 DSVRAYLKQIGKVPLLNAAQEVELAKRIEAGLYAVERLRQLKE------AGEEIPTQVR- 309
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 310 --RDLEWVTRDGDRAKNHLLAANLRLVVSLAKRYTGRGMAFLDLIQ 353
>gi|428769135|ref|YP_007160925.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
gi|428683414|gb|AFZ52881.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
Length = 399
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 208 HAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLARE 267
H+E V++ K I L+L K+ E + E E A ++ EL++IL A++
Sbjct: 108 HSEAVKIGK-IAQQLNLTPKKV---ESIITE-GKETWANLAQVKLSELETILANGIKAKQ 162
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
K++ +N+RLV+SIA++Y N G ++ DL+Q
Sbjct: 163 KMINANLRLVVSIAKKYQNRGLELLDLIQ 191
>gi|295838256|ref|ZP_06825189.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
gi|197698235|gb|EDY45168.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
Length = 341
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Query: 156 RRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKG-YVKGVVSEELLTHAEVVRL 214
RR ++ SQ + GS+ RSM S E+ L G Y+ + LL A+ V L
Sbjct: 8 RRQSATGSGASQASGSGETRGSRGARSM-SGEIADRDLVGMYLDEIARTPLLDAAKEVEL 66
Query: 215 SKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNV 274
S+ I+ G+ ++ L E + A SR EL+++ A++ + SN+
Sbjct: 67 SQTIEAGVFA-------RQILDGETDSKNEA-----SREELEALWEASERAKDVFIRSNL 114
Query: 275 RLVMSIAQRYDNMGADMADLVQ 296
RLV+++A+RY G + DL+Q
Sbjct: 115 RLVVAVARRYPRAGLPLLDLIQ 136
>gi|332670669|ref|YP_004453677.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cellulomonas fimi
ATCC 484]
gi|332339707|gb|AEE46290.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cellulomonas fimi
ATCC 484]
Length = 538
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL ++ RL + EP + R
Sbjct: 242 VKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEE---RLNAGVAMEPKL----------R 288
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 289 RELEWIAGDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 332
>gi|323453176|gb|EGB09048.1| hypothetical protein AURANDRAFT_53467 [Aureococcus anophagefferens]
Length = 468
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L ++ + LL+ E L+++++ + + + L LG EP+ + A+ RISR
Sbjct: 136 LHWQIRNMGQTALLSSDEEKALARRVQRLCTWEGIRANLTASLGREPTELEWGAAARISR 195
Query: 253 PELQSILME-----CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ E C A+ ++ +N+RLV+SI++RY + G D++Q
Sbjct: 196 AACENGSFEKARKKCLKAKAAMINANLRLVVSISKRYQHRGLHFQDVIQ 244
>gi|254821650|ref|ZP_05226651.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379748146|ref|YP_005338967.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379755437|ref|YP_005344109.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|379762983|ref|YP_005349380.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|406031675|ref|YP_006730566.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
gi|378800510|gb|AFC44646.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|378805653|gb|AFC49788.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|378810925|gb|AFC55059.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|405130222|gb|AFS15477.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
Length = 488
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + ER P+ +
Sbjct: 186 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTEMTERGDKLPAAQ-------- 237
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++Q I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 238 -RRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 282
>gi|451944378|ref|YP_007465014.1| RNA polymerase sigma factor [Corynebacterium halotolerans YIM 70093
= DSM 44683]
gi|451903765|gb|AGF72652.1| RNA polymerase sigma factor [Corynebacterium halotolerans YIM 70093
= DSM 44683]
Length = 517
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL + V L+K+I+ GL D +++E +L +L+
Sbjct: 209 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYADYRMQQMEEAFAAGDKDAKLTPALK- 267
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 268 --RDLRAISRDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 311
>gi|387876811|ref|YP_006307115.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|443306603|ref|ZP_21036391.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
gi|386790269|gb|AFJ36388.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|442768167|gb|ELR86161.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
Length = 501
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + ER P+ +
Sbjct: 199 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTEMTERGDKLPAAQ-------- 250
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++Q I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 251 -RRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 295
>gi|443316869|ref|ZP_21046297.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783541|gb|ELR93453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 443
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 22/97 (22%)
Query: 222 LSLDDHKLRLKERLGCEPSMEQLAASLRIS----RP------------------ELQSIL 259
+ L D + RL LG PS+E+ A + IS +P EL+ +
Sbjct: 139 VHLMDTRDRLTSHLGHRPSLERWAETAGISVVDLKPTLSSGKRHWAELASLTVAELEEAI 198
Query: 260 MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E A+E ++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 199 REGLRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 235
>gi|377561657|ref|ZP_09791100.1| RNA polymerase sigma factor SigB [Gordonia otitidis NBRC 100426]
gi|377521219|dbj|GAB36265.1| RNA polymerase sigma factor SigB [Gordonia otitidis NBRC 100426]
Length = 337
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L ++RL AA R +L
Sbjct: 44 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HVLENRKRL--------TAAKKR----DL 90
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ E +AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 91 AIVVREGEIARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 131
>gi|326332710|ref|ZP_08198972.1| RNA polymerase principal sigma factor SigB [Nocardioidaceae
bacterium Broad-1]
gi|325949491|gb|EGD41569.1| RNA polymerase principal sigma factor SigB [Nocardioidaceae
bacterium Broad-1]
Length = 315
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + ELL A+ V LSK I+ GL + E L E + + A +R EL
Sbjct: 21 YLDEIARNELLDAAKEVELSKAIEAGL--------MAEHLLAEGRVGRKKAPGGATRAEL 72
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + E A + + +N+RLV+SIA++Y M DL+Q
Sbjct: 73 EWLAEEGHRATREFINANLRLVVSIARKYGRAQMPMLDLIQ 113
>gi|300784507|ref|YP_003764798.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
U32]
gi|384147774|ref|YP_005530590.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|399536392|ref|YP_006549054.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|299794021|gb|ADJ44396.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
U32]
gi|340525928|gb|AEK41133.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|398317162|gb|AFO76109.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
Length = 467
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL E V L+K+I+ GL + ++R E G E+L +R
Sbjct: 167 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAE-RVRTAEEEG-----EKLVTQMR--- 217
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 218 RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 261
>gi|429218921|ref|YP_007180565.1| sigma-70 family RNA polymerase sigma factor [Deinococcus
peraridilitoris DSM 19664]
gi|429129784|gb|AFZ66799.1| RNA polymerase sigma factor, sigma-70 family [Deinococcus
peraridilitoris DSM 19664]
Length = 489
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 19/95 (20%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI---SRPELQSILME 261
LLT AE + L+++I+ G E + +L A L + +R LQ + +
Sbjct: 201 LLTLAEEISLARRIEEG----------------EEARAKLEADLDLDDRARRSLQRQVED 244
Query: 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
AR+ L+ +N+RLV+SIA++Y N G DL+Q
Sbjct: 245 GQAARQGLIEANLRLVVSIAKKYSNRGMGFLDLIQ 279
>gi|219883041|ref|YP_002478205.1| RNA polymerase sigma-32 subunit RpoH [Arthrobacter chlorophenolicus
A6]
gi|219862047|gb|ACL42388.1| RNA polymerase, sigma 32 subunit, RpoH [Arthrobacter
chlorophenolicus A6]
Length = 951
Score = 45.1 bits (105), Expect = 0.042, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 171 ILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLR 230
+L+++ S + + I + ++ Y++ S +LLTH EV L I+ GL +H L
Sbjct: 447 VLERDDSDWSEAPVLEGSIGDDVRLYLEQASSFDLLTHEEVTDLGMAIEAGL-YAEHLLG 505
Query: 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 290
G R + EL+S+ A KLV N+RLV+SIA+R+ G D
Sbjct: 506 TARPEG------------RRAILELESVASAGRDAVLKLVSCNLRLVVSIAKRHTGRGMD 553
Query: 291 MADLVQ 296
DL+Q
Sbjct: 554 FLDLIQ 559
>gi|187736115|ref|YP_001878227.1| RpoD family RNA polymerase sigma-70 subunit [Akkermansia
muciniphila ATCC BAA-835]
gi|187426167|gb|ACD05446.1| RNA polymerase, sigma 70 subunit, RpoD family [Akkermansia
muciniphila ATCC BAA-835]
Length = 688
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 211 VVRLSKKIKTGLSLDDHKLRLKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKL 269
V+R+ KK+ +L+ LKE L E M A + + EL+ L E A++++
Sbjct: 396 VLRMQKKV----ALEPDNKELKEHLAELELRMWMTADEMGDAYQELRKWLREARRAKDEM 451
Query: 270 VMSNVRLVMSIAQRYDNMGADMADLVQ 296
V +N+RLV+SIA++Y N G DL+Q
Sbjct: 452 VEANLRLVISIAKKYTNRGLSFLDLIQ 478
>gi|159039487|ref|YP_001538740.1| RpoD family RNA polymerase sigma factor [Salinispora arenicola
CNS-205]
gi|157918322|gb|ABV99749.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 329
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL A V LSK I+ GL E +++ + R EL
Sbjct: 38 YLHEISRTPLLDAATEVDLSKAIEAGLY-------------AEHLLDEDRVPAGVERAEL 84
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q ++ E A++ + +N+RLV+SIA+RY G M DL+Q
Sbjct: 85 QRLVAEGERAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQ 125
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 58/107 (54%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L+ + R+++ L E S + +
Sbjct: 69 EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERIEDELDREISDAEWGKEVD 128
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + L A++K+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 129 MELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 175
>gi|443325525|ref|ZP_21054216.1| RNA polymerase sigma factor, sigma-70 family [Xenococcus sp. PCC
7305]
gi|442794846|gb|ELS04242.1| RNA polymerase sigma factor, sigma-70 family [Xenococcus sp. PCC
7305]
Length = 294
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 23/107 (21%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHK-LRLKERLGCEPSMEQLAASLR 249
N +K Y+K + LLT E V L+ +I+ L L D K L L+E+
Sbjct: 6 NSVKSYLKAIGRIPLLTGEEEVILANQIQAMLPLLDKKDLVLEEK--------------- 50
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ A+ K+V +N+RLV+SIA++Y N G + DL+Q
Sbjct: 51 -------KIVQNGQRAKRKMVQANLRLVVSIAKKYQNRGLTLLDLIQ 90
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%)
Query: 199 GVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSI 258
G +LT E +K L+ + R+ E EP+ Q A ++ I R L +
Sbjct: 123 GAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKM 182
Query: 259 LMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L +RE++ S RLV+SIA RY G + DL+Q
Sbjct: 183 LCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQ 220
>gi|256375646|ref|YP_003099306.1| RNA polymerase sigma factor [Actinosynnema mirum DSM 43827]
gi|255919949|gb|ACU35460.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 435
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL E V L+K+I+ GL + R E E+L +R
Sbjct: 135 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRR------AEDESEKLTPQMR--- 185
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 186 RDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 229
>gi|148271746|ref|YP_001221307.1| putative RNA polymerase sigma 70 factor [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147829676|emb|CAN00592.1| putative RNA polymerase sigma 70 factor [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 347
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 13/115 (11%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
S+++P + +K Y++ + LLT + V ++++I+ G+ + L R P+
Sbjct: 40 SLVTPGASTDAVKDYLRQIGRVPLLTAEQEVTVARRIEVGVLSQEV---LDTRTDLTPA- 95
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R E Q++ + A++ LV +N+RLV+SIA+RY G DL+Q
Sbjct: 96 ---------ERREYQTLAQDGMRAKQHLVNANLRLVVSIAKRYTGRGLPFLDLIQ 141
>gi|441508327|ref|ZP_20990251.1| RNA polymerase sigma factor SigB [Gordonia aichiensis NBRC 108223]
gi|441447355|dbj|GAC48212.1| RNA polymerase sigma factor SigB [Gordonia aichiensis NBRC 108223]
Length = 336
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L ++RL AA R +L
Sbjct: 43 YLNGIGRTALLNAEQEVELAKQIEAGLYAK-HVLATRKRLS--------AAKKR----DL 89
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 90 AIVVREGETARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 130
>gi|334337294|ref|YP_004542446.1| RpoD subfamily RNA polymerase sigma-70 subunit [Isoptericola
variabilis 225]
gi|334107662|gb|AEG44552.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Isoptericola
variabilis 225]
Length = 547
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL ++ RL + G + +A R
Sbjct: 241 VKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEE---RLSKEFGEGWDKTKASAEERRLY 297
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 298 RDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 341
>gi|302519838|ref|ZP_07272180.1| RNA polymerase sigma factor RpoS [Streptomyces sp. SPB78]
gi|302428733|gb|EFL00549.1| RNA polymerase sigma factor RpoS [Streptomyces sp. SPB78]
Length = 341
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 156 RRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKG-YVKGVVSEELLTHAEVVRL 214
RR ++ SQ + GS+ RSM S E+ L G Y+ + LL A+ V L
Sbjct: 8 RRQSATGSGASQASGSGETRGSRGARSM-SGEIADRDLVGMYLDEIARTPLLDAAKEVEL 66
Query: 215 SKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNV 274
S+ I+ G+ ++ L E + SR EL+++ A++ + SN+
Sbjct: 67 SQTIEAGVFA-------RQILDGETDTKN-----ETSREELEALWEASERAKDVFIRSNL 114
Query: 275 RLVMSIAQRYDNMGADMADLVQ 296
RLV+++A+RY G + DL+Q
Sbjct: 115 RLVVAVARRYPRAGLPLLDLIQ 136
>gi|423350097|ref|ZP_17327750.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
gi|404387959|gb|EJZ83050.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
Length = 329
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 20/105 (19%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLS----LDDHKLRLKERLGCEPSMEQLAASLRIS 251
Y+ G+ +LLT + V L+K+I+ GL L DH EP R
Sbjct: 35 YLNGIGKTDLLTADDEVELAKQIEVGLYAEHVLADHD---------EPLT-------RAK 78
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L+ + + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 79 KRDLKVLARQGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|395236960|ref|ZP_10415090.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
gi|394487844|emb|CCI83178.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
Length = 339
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 20/105 (19%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLS----LDDHKLRLKERLGCEPSMEQLAASLRIS 251
Y+ G+ +LLT + V L+K+I+ GL L DH EP R
Sbjct: 45 YLNGIGKTDLLTADDEVELAKQIEVGLYAEHVLADHD---------EPLT-------RAK 88
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L+ + + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 89 KRDLKVLARQGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 133
>gi|318080032|ref|ZP_07987364.1| RNA polymerase sigma factor [Streptomyces sp. SA3_actF]
Length = 340
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 17/112 (15%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL 244
+P+L + Y++ + LLT A+ V L+++++ GL + KL G P +L
Sbjct: 40 APDLFRQ----YLREIGRIPLLTAADEVDLARRVEAGL-FAEAKL-----AGPGPLDTRL 89
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A +L +++ A+ +L+ SN+RLV+S+A+RY G M DLVQ
Sbjct: 90 AL-------DLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQ 134
>gi|318058872|ref|ZP_07977595.1| RNA polymerase principal sigma factor [Streptomyces sp. SA3_actG]
gi|333027299|ref|ZP_08455363.1| putative RNA polymerase sigma (70) factor RpoD [Streptomyces sp.
Tu6071]
gi|332747151|gb|EGJ77592.1| putative RNA polymerase sigma (70) factor RpoD [Streptomyces sp.
Tu6071]
Length = 338
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 17/112 (15%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL 244
+P+L + Y++ + LLT A+ V L+++++ GL + KL G P +L
Sbjct: 38 APDLFRQ----YLREIGRIPLLTAADEVDLARRVEAGL-FAEAKL-----AGPGPLDTRL 87
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A +L +++ A+ +L+ SN+RLV+S+A+RY G M DLVQ
Sbjct: 88 AL-------DLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQ 132
>gi|159904297|ref|YP_001551641.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889473|gb|ABX09687.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 335
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 63/104 (60%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL++ + + L + ++ ++L++ + + G +P++++LA++ ++
Sbjct: 28 IRSYLRDIGRVPLLSNDQEITLGRHVQELMALENLEKDWQSTHGQKPNLDELASAAGLTV 87
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ A+E++V +N+RLV+SIA++Y ++ DL+Q
Sbjct: 88 GALKKKFRLGERAKERMVAANLRLVVSIAKKYTKRNMELLDLIQ 131
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 60/107 (56%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
++ ++ Y++ + LL E + L++KI L L++ + ++ G P ++ A +
Sbjct: 158 EDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWAVLVD 217
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + LM A+EK+V SN+RLV+SIA++Y N G DL+Q
Sbjct: 218 MPPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 264
>gi|4105839|gb|AAD02575.1| RNA polymerase sigma factor [Cyanidium caldarium]
Length = 589
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL 264
TH E VR +D L+ R+G P + A +S EL+ L++
Sbjct: 286 FFTHLEAVR-----------ED----LRRRIGRLPREHEWAMETNMSVSELRGKLIKGRR 330
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ ++V +N+RLV+ A+R+ N G DLVQ
Sbjct: 331 AKNRMVAANLRLVICFAKRFRNRGVAFQDLVQ 362
>gi|308205773|gb|ADO19206.1| RNA polymerase sigma factor [Nostoc flagelliforme str. Sunitezuoqi]
Length = 124
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%)
Query: 222 LSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281
L+++ K L +RL P+ +L+A + + EL IL + LA+ ++ +N+RLV+++A
Sbjct: 2 LAIEQQKNLLVQRLKRSPNGSELSAQVNKTEAELTQILEQGQLAKHLMITANLRLVVAVA 61
Query: 282 QRYDNMGADMADLVQ 296
++Y + DL+Q
Sbjct: 62 KKYRWSNLEFLDLIQ 76
>gi|18477825|emb|CAC83730.1| sigma factor [Rhodococcus fascians D188]
Length = 323
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT E V L+K+I+ GL + +E + + L
Sbjct: 30 YLNGIGRTALLTAEEEVDLAKRIEAGLY-------------AKQVLENTKRLSAVKKRNL 76
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ + S AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 77 AIIVRDGSAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|284990384|ref|YP_003408938.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284063629|gb|ADB74567.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 429
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG--CEPSMEQLAASL 248
+ ++ Y+K + LL E V L+K+I+ GL +LR E G P M
Sbjct: 127 DSVRAYLKQIGKVALLNAEEEVDLAKRIEAGL-YGAERLRQAEEEGQKLSPQM------- 178
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R +L I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 179 ---RRDLNWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 223
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
G + LLT + V S+ I+ L L+ + L G EP+ Q A +
Sbjct: 186 GCFYKMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENT 245
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + +V SNVRLV+SIA+ ++ G + +DL+Q
Sbjct: 246 LRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 287
>gi|340757175|ref|ZP_08693778.1| RpoD family RNA polymerase sigma factor [Fusobacterium varium ATCC
27725]
gi|251834444|gb|EES63007.1| RpoD family RNA polymerase sigma factor [Fusobacterium varium ATCC
27725]
Length = 260
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 27/32 (84%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+EKLV SN+RLV+SIA++Y NMG + DL+Q
Sbjct: 36 AQEKLVTSNLRLVISIARKYTNMGIPILDLIQ 67
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
G + LLT + V S+ I+ L L+ + L G EP+ Q A +
Sbjct: 32 GCFYKMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENT 91
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + +V SNVRLV+SIA+ ++ G + +DL+Q
Sbjct: 92 LRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 133
>gi|148272828|ref|YP_001222389.1| RNA polymerase sigma factor [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830758|emb|CAN01698.1| RNA polymerase principal sigma factor [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 492
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 19/107 (17%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+ +I+ GL +D +LA + ISR
Sbjct: 196 VKDYLKQIGKVALLNAAEEVELAMRIEAGLFAED----------------KLANTPGISR 239
Query: 253 P---ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 240 ELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQ 286
>gi|379736693|ref|YP_005330199.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
gi|378784500|emb|CCG04169.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
Length = 450
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG--CEPSMEQLAASL 248
+ ++ Y+K + LL E V L+K+I+ GL +LR E G P M
Sbjct: 148 DSVRAYLKQIGKVALLNAEEEVDLAKRIEAGL-YGSERLRQVEEEGQKISPQM------- 199
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R +L I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 200 ---RRDLNWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 244
>gi|412993395|emb|CCO16928.1| RNA polymerase sigma factor RpoD [Bathycoccus prasinos]
Length = 733
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 23/141 (16%)
Query: 169 KSILQ--QNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDD 226
+ ILQ Q+ ++Q+ SM K Y+K + S LL E V+L++KI+ ++L+
Sbjct: 364 RGILQANQHSAQQVDSM----------KVYLKEIGSVSLLNANEEVQLARKIQDLMNLET 413
Query: 227 --HKLRLKERLGCEP---------SMEQLAASLRISRPELQSILMECSLAREKLVMSNVR 275
+L K G +P + A L ++ EL+ L E A+ ++ +N+R
Sbjct: 414 TYKELVAKVAEGNDPIAQTHGDKVTKSMWARELGLTEFELEMRLTEGKNAKNHMIQANLR 473
Query: 276 LVMSIAQRYDNMGADMADLVQ 296
LV+SIA+RY N DL+Q
Sbjct: 474 LVVSIAKRYANRNMSFQDLIQ 494
>gi|451338995|ref|ZP_21909521.1| RNA polymerase sigma factor RpoD [Amycolatopsis azurea DSM 43854]
gi|449418374|gb|EMD23965.1| RNA polymerase sigma factor RpoD [Amycolatopsis azurea DSM 43854]
Length = 466
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL-GCEPSMEQLAASLRIS 251
++ Y+K + LL E V L+K+I+ GL ER+ E E+L +R
Sbjct: 166 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYA-------AERVRNAEEEGEKLVTQMR-- 216
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 217 -RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 260
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE 254
G + LLT + V S+ I+ L L+ + L G EP+ Q A +
Sbjct: 229 GCFYKMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENT 288
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+ L + +V SNVRLV+SIA+ ++ G + +DL+Q
Sbjct: 289 LRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 330
>gi|331696864|ref|YP_004333103.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951553|gb|AEA25250.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length = 461
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL E V L+K+I+ GL + R E S E+++ LR
Sbjct: 161 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRRAIE------SGEKVSPQLR--- 211
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 212 RDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 255
>gi|289444245|ref|ZP_06433989.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T46]
gi|289417164|gb|EFD14404.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T46]
Length = 375
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+ R
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAAQRR 279
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 280 ---DMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|441521275|ref|ZP_21002936.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
gi|441459107|dbj|GAC60897.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
Length = 332
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT + V LSK I+ GL H L K+RL P+ ++ A L
Sbjct: 39 YLNGIGRTALLTAEQEVDLSKAIEAGLYAK-HLLATKKRLS--PAKKRDYAIL------- 88
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 89 ---VREGEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 126
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%)
Query: 199 GVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSI 258
G +LT E +K L+ + R+ E EP+ Q A ++ I R L +
Sbjct: 16 GAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKM 75
Query: 259 LMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L +RE++ S RLV+SIA RY G + DL+Q
Sbjct: 76 LCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQ 113
>gi|451944386|ref|YP_007465022.1| RNA polymerase sigma factor SigB [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903773|gb|AGF72660.1| RNA polymerase sigma factor SigB [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 329
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT + V L+++I+ GL D + L+ E EP R + +L
Sbjct: 35 YLNGIGKTALLTAEDEVELAQRIEVGLYAD-YLLKNSE----EPLT-------RAKKRDL 82
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + E + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 83 KVLAKEGNKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|359463990|ref|ZP_09252553.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 326
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 57/104 (54%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + V K+++ L K+ L+E S A ++ ++
Sbjct: 17 VRNYLHEIGRIPLLTHEQEVLYGKQVQQMKMLLARKVELEEINPTSISQADWAQAVELTE 76
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ L++ A+ K++ +N+RLV+S+A++Y ++ DL+Q
Sbjct: 77 SELEQALVQGQRAKNKMIQANLRLVVSVAKQYLRRNMELLDLIQ 120
>gi|257056437|ref|YP_003134269.1| RNA polymerase sigma factor SigB [Saccharomonospora viridis DSM
43017]
gi|256586309|gb|ACU97442.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
Length = 342
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT E V L+K+I+ G+ H L + L E + EL
Sbjct: 49 YLNGIGKTALLTAEEEVDLAKRIEAGV-FAQHVLDTSDDLSEE------------RKAEL 95
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 96 SEVVRDGEEAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQ 136
>gi|227503471|ref|ZP_03933520.1| RNA polymerase sigma factor SigB [Corynebacterium accolens ATCC
49725]
gi|306836281|ref|ZP_07469263.1| RNA polymerase principal sigma factor SigB [Corynebacterium
accolens ATCC 49726]
gi|227075974|gb|EEI13937.1| RNA polymerase sigma factor SigB [Corynebacterium accolens ATCC
49725]
gi|304567873|gb|EFM43456.1| RNA polymerase principal sigma factor SigB [Corynebacterium
accolens ATCC 49726]
Length = 337
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ +LL+ + V L++ I+ GL + +KL E+L R + +L
Sbjct: 44 YLNGIGKTDLLSAEDEVELAQTIEVGLYAE-YKLNNAEKL------------TRAEKRDL 90
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 91 KILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 131
>gi|156742920|ref|YP_001433049.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156234248|gb|ABU59031.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 348
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 80/146 (54%), Gaps = 23/146 (15%)
Query: 158 LNSKKKILSQNKSI----LQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVR 213
L+ +++I++++ + +++ ++ L + P+ + ++ Y++ + LLT AE +
Sbjct: 13 LDERQEIVNEDDTAPVTDIEEMTAETLEETLEPDSTLDSIQHYLQEIGRVPLLTAAEEIE 72
Query: 214 LSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLARE---KLV 270
L+++++ G + + RL S E L+ LR Q++L + + A+E L+
Sbjct: 73 LAERMERGAAAE-------RRLA---SGEDLSPQLR------QALLADVAAAQEARRHLI 116
Query: 271 MSNVRLVMSIAQRYDNMGADMADLVQ 296
+N+RLV+SIA++Y G + DL+Q
Sbjct: 117 QANLRLVVSIAKKYVGRGLSLLDLIQ 142
>gi|441151865|ref|ZP_20965883.1| RNA polymerase sigma factor [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440618851|gb|ELQ81912.1| RNA polymerase sigma factor [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 362
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+++ GL KL E G R+ R
Sbjct: 67 VKDYLKLIGKVPLLNAEQEVELAKRVEAGL-FAQEKLDTGEPTG------------RLRR 113
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ ++ + + A+E LV +N+RLV+S+A+RY G DL+Q
Sbjct: 114 -ELEILVADGARAKEHLVEANLRLVVSLAKRYTGRGMLFLDLIQ 156
>gi|452948554|gb|EME54032.1| RNA polymerase primary sigma factor [Amycolatopsis decaplanina DSM
44594]
Length = 466
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL-GCEPSMEQLAASLR 249
+ ++ Y+K + LL E V L+K+I+ GL ER+ E E+L +R
Sbjct: 164 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYA-------AERVRNAEEEGEKLVTQMR 216
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 217 ---RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 260
>gi|269127406|ref|YP_003300776.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermomonospora
curvata DSM 43183]
gi|268312364|gb|ACY98738.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermomonospora
curvata DSM 43183]
Length = 385
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 19/104 (18%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRIS---R 252
Y++ + LLT E V L+K I+ GL + E+LA + IS R
Sbjct: 93 YLREIGRVPLLTAEEEVELAKTIEAGLFAE----------------EKLARAAFISPRER 136
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I E + A+++L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 137 LDLELIAREGARAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQ 180
>gi|186681474|ref|YP_001864670.1| RNA polymerase sigma factor SigC [Nostoc punctiforme PCC 73102]
gi|186463926|gb|ACC79727.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 416
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRIS----RP------------------ELQSILMECSLARE 267
RL LG PS+E+ AA+ I RP EL+ + + A+E
Sbjct: 120 RLTSELGHRPSLERWAATADIVLSDLRPTLANGKRRWAEIAKLTVEELEQVQSQGLQAKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|170782020|ref|YP_001710352.1| RNA polymerase sigma factor [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156588|emb|CAQ01739.1| putative RNA polymerase sigma factor [Clavibacter michiganensis
subsp. sepedonicus]
Length = 355
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 19/107 (17%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+ +I+ GL +D +LA + ISR
Sbjct: 59 VKDYLKQIGKVALLNAAEEVELAMRIEAGLFAED----------------KLANTPGISR 102
Query: 253 P---ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 103 ELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQ 149
>gi|86742187|ref|YP_482587.1| sigma 38 [Frankia sp. CcI3]
gi|86569049|gb|ABD12858.1| sigma 38 [Frankia sp. CcI3]
Length = 422
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL A+ V LSK+++ GL ++KL S+ L A LR +L
Sbjct: 129 YLREIGKVPLLNAAQEVELSKRVEAGL-FAEYKLE---------SVPDLPADLR---RDL 175
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + A+++LV +N+RLV+S+A++Y G + DLVQ
Sbjct: 176 GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 216
>gi|347951822|gb|AEP33047.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
gi|347951824|gb|AEP33048.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
gi|347951826|gb|AEP33049.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
gi|347951828|gb|AEP33050.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
gi|347951830|gb|AEP33051.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
Length = 265
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 19/107 (17%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+ +I+ GL +D +LA + ISR
Sbjct: 19 VKDYLKQIGKVALLNAAEEVELAMRIEAGLFAED----------------KLANTPGISR 62
Query: 253 P---ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 63 ELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQ 109
>gi|331696792|ref|YP_004333031.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951481|gb|AEA25178.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length = 348
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPE- 254
Y+ G+ LLT A+ V L+K+I+ G+ ++ AA R P+
Sbjct: 51 YLNGIGKTALLTAAQEVDLAKRIEAGVF-------------ARHVLDTAAAEGRELDPDY 97
Query: 255 ---LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L+++ + + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 98 ARDLRAVARDGARARNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 142
>gi|87300555|ref|ZP_01083397.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
gi|87284426|gb|EAQ76378.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
Length = 398
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 36/52 (69%)
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
AA L +S +LQ L+ AR++++ +N+RLV+++A++Y G ++ DLVQ
Sbjct: 138 AACLDLSLSDLQQRLLRGRRARDRMIQANLRLVVAVAKKYQKRGVELLDLVQ 189
>gi|453363955|dbj|GAC80270.1| RNA polymerase sigma factor SigA [Gordonia malaquae NBRC 108250]
Length = 466
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + R+ E S E+L +
Sbjct: 164 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFSTERMRRIME------SGEKLTVA--- 214
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R +L I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 215 QRRDLSWIARDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 260
>gi|227549119|ref|ZP_03979168.1| RNA polymerase sigma factor SigB [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078816|gb|EEI16779.1| RNA polymerase sigma factor SigB [Corynebacterium lipophiloflavum
DSM 44291]
Length = 331
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 20/105 (19%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLS----LDDHKLRLKERLGCEPSMEQLAASLRIS 251
Y+ G+ LL AE V L+++I+ GL LDD +L R
Sbjct: 37 YLNGIGKTALLDAAEEVELAQRIEVGLYAQFLLDDPDTKLT----------------RAK 80
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L+ + + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 81 KRDLKILAKQGRRARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 125
>gi|347951690|gb|AEP32981.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951692|gb|AEP32982.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951694|gb|AEP32983.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951696|gb|AEP32984.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951698|gb|AEP32985.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951700|gb|AEP32986.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951702|gb|AEP32987.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951704|gb|AEP32988.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951706|gb|AEP32989.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951708|gb|AEP32990.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951710|gb|AEP32991.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951712|gb|AEP32992.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951714|gb|AEP32993.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951716|gb|AEP32994.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951718|gb|AEP32995.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951720|gb|AEP32996.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951722|gb|AEP32997.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951724|gb|AEP32998.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951726|gb|AEP32999.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951728|gb|AEP33000.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951730|gb|AEP33001.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951732|gb|AEP33002.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951734|gb|AEP33003.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951736|gb|AEP33004.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951738|gb|AEP33005.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951740|gb|AEP33006.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951742|gb|AEP33007.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951744|gb|AEP33008.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951746|gb|AEP33009.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951748|gb|AEP33010.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951750|gb|AEP33011.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951752|gb|AEP33012.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951754|gb|AEP33013.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951756|gb|AEP33014.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951758|gb|AEP33015.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951760|gb|AEP33016.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951762|gb|AEP33017.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951764|gb|AEP33018.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951766|gb|AEP33019.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951768|gb|AEP33020.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951770|gb|AEP33021.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951772|gb|AEP33022.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951774|gb|AEP33023.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951776|gb|AEP33024.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951778|gb|AEP33025.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951780|gb|AEP33026.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951782|gb|AEP33027.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951784|gb|AEP33028.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951786|gb|AEP33029.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951788|gb|AEP33030.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951790|gb|AEP33031.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951792|gb|AEP33032.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951794|gb|AEP33033.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951796|gb|AEP33034.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951798|gb|AEP33035.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951800|gb|AEP33036.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951802|gb|AEP33037.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951804|gb|AEP33038.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951806|gb|AEP33039.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951808|gb|AEP33040.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951810|gb|AEP33041.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951812|gb|AEP33042.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951814|gb|AEP33043.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951816|gb|AEP33044.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951818|gb|AEP33045.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951820|gb|AEP33046.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951832|gb|AEP33052.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
nebraskensis]
gi|347951834|gb|AEP33053.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
nebraskensis]
gi|347951836|gb|AEP33054.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
tessellarius]
gi|347951838|gb|AEP33055.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
tessellarius]
Length = 265
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 19/107 (17%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+ +I+ GL +D +LA + ISR
Sbjct: 19 VKDYLKQIGKVALLNAAEEVELAMRIEAGLFAED----------------KLANTPGISR 62
Query: 253 P---ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 63 ELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQ 109
>gi|325266676|ref|ZP_08133353.1| DNA-directed RNA polymerase sigma subunit RpoD [Kingella
denitrificans ATCC 33394]
gi|324982119|gb|EGC17754.1| DNA-directed RNA polymerase sigma subunit RpoD [Kingella
denitrificans ATCC 33394]
Length = 671
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 241 MEQLAASLRISRPELQSI-------LMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
M +L A RIS EL+ I E + A++K++ +N+RLV+SIA++Y N G D
Sbjct: 398 MAELEAHARISIAELKEISKNMVKSEKETAAAKQKMIQANLRLVISIAKKYTNRGLQFLD 457
Query: 294 LVQ 296
L+Q
Sbjct: 458 LIQ 460
>gi|289751356|ref|ZP_06510734.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T92]
gi|289691943|gb|EFD59372.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T92]
Length = 470
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL E V L+K+I+ GL L ER E+L A+ R
Sbjct: 228 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAAQRR-- 279
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 280 -DMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|443293686|ref|ZP_21032780.1| RNA polymerase principal sigma factor [Micromonospora lupini str.
Lupac 08]
gi|385883544|emb|CCH20931.1| RNA polymerase principal sigma factor [Micromonospora lupini str.
Lupac 08]
Length = 316
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL A+ V LSK I+ GL E + + A + R +L
Sbjct: 25 YLHEISRTPLLDAAKEVDLSKAIEAGLY-------------AEHLLGEDAVPDGVDRADL 71
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +++E A++ + +N+RLV+SIA+RY G M DL+Q
Sbjct: 72 ERLVVEGERAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQ 112
>gi|428774079|ref|YP_007165867.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
gi|428688358|gb|AFZ48218.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
Length = 389
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+S EL+ IL A+++++ +N+RLV+SIA++Y N G D+ DL+Q
Sbjct: 135 LSVDELREILSVGKRAKQQMINANLRLVVSIAKKYQNRGLDLLDLIQ 181
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRI----------------------SRPELQSILMECSLARE 267
RL +LG PS+E+ AA+ + S EL+ I + + A+E
Sbjct: 121 RLVSQLGHRPSLERWAATAGVEVSDLKPILAAGKQRWAELAGLSVKELEQIQSQGNRAKE 180
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 181 HMIKANLRLVVSVAKKYQNRGLELLDLIQ 209
>gi|339632715|ref|YP_004724357.1| RNA polymerase sigma factor SigA [Mycobacterium africanum GM041182]
gi|339332071|emb|CCC27777.1| RNA polymerase sigma factor SIGA (SIGMA-A) [Mycobacterium africanum
GM041182]
Length = 528
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 277 QRRDMMWICRDGGRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|403730493|ref|ZP_10949025.1| RNA polymerase sigma factor SigA, partial [Gordonia rhizosphera
NBRC 16068]
gi|403202474|dbj|GAB93356.1| RNA polymerase sigma factor SigA, partial [Gordonia rhizosphera
NBRC 16068]
Length = 442
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + R+ E S E+L+ +
Sbjct: 178 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATERMRRIME------SGEKLSTA--- 228
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 229 QKRDLNWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 274
>gi|336325738|ref|YP_004605704.1| RNA polymerase sigma factor B [Corynebacterium resistens DSM 45100]
gi|336101720|gb|AEI09540.1| RNA polymerase sigma factor B [Corynebacterium resistens DSM 45100]
Length = 337
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LLT + V LS++I+ GL E ++ R + +L
Sbjct: 44 YLNGIGKTALLTAEDEVELSQRIEVGLY-------------AEHLLKNSTDLTRARKRDL 90
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 91 KILAREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 131
>gi|308371101|ref|ZP_07423832.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308379284|ref|ZP_07485758.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308405944|ref|ZP_07494511.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|422813752|ref|ZP_16862124.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|308329814|gb|EFP18665.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308357496|gb|EFP46347.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308365045|gb|EFP53896.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|323718698|gb|EGB27860.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|379029013|dbj|BAL66746.1| RNA polymerase sigma factor [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
Length = 530
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 228 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 278
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 279 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 324
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE-----RLGCEPSMEQLAAS 247
+K Y+K + S LLT + V L+ +I+ + L+ + +L+E + E S A +
Sbjct: 256 MKTYLKDIGSVSLLTGEQEVELAMRIQDLVYLEGVREQLEEEAKRRKQTSEVSNFDWAIA 315
Query: 248 LRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ EL+ L A+ +++ +N+RLV+SIA+RY N DL+Q
Sbjct: 316 ANVTERELKERLDAGKRAKNQMIQANLRLVVSIAKRYANKSMSFQDLIQ 364
>gi|433642889|ref|YP_007288648.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
gi|432159437|emb|CCK56741.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
Length = 528
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|433635765|ref|YP_007269392.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
gi|432167358|emb|CCK64869.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
Length = 528
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|21220928|ref|NP_626707.1| RNA polymerase principal sigma factor [Streptomyces coelicolor
A3(2)]
gi|289771799|ref|ZP_06531177.1| RNA polymerase principal sigma factor hrdA [Streptomyces lividans
TK24]
gi|19856645|sp|P18182.2|HRDA_STRCO RecName: Full=RNA polymerase principal sigma factor HrdA
gi|6759560|emb|CAB69753.1| RNA polymerase principal sigma factor [Streptomyces coelicolor
A3(2)]
gi|289701998|gb|EFD69427.1| RNA polymerase principal sigma factor hrdA [Streptomyces lividans
TK24]
Length = 396
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL+ AE V L+++++ GL + E+L C P ++ A +L
Sbjct: 103 YLREIGRIPLLSAAEEVDLARRVEAGLFAE-------EKLRCSPGLDDRLAL------DL 149
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ LA+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 150 DRLVVLGRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 190
>gi|145596092|ref|YP_001160389.1| RpoD family RNA polymerase sigma factor [Salinispora tropica
CNB-440]
gi|145305429|gb|ABP56011.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora tropica
CNB-440]
Length = 332
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LL A V LSK I+ GL E +++ + + EL
Sbjct: 40 YLHEISRTPLLDAATEVDLSKAIEAGLY-------------AEHLLDEDRVPAGVEKAEL 86
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q ++ E + A++ + +N+RLV+SIA+RY G M DL+Q
Sbjct: 87 QRLVAEGARAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQ 127
>gi|1072021|gb|AAA81642.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|15609840|ref|NP_217219.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|15842241|ref|NP_337278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CDC1551]
gi|31793875|ref|NP_856368.1| RNA polymerase sigma factor [Mycobacterium bovis AF2122/97]
gi|121638578|ref|YP_978802.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662544|ref|YP_001284067.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148823893|ref|YP_001288647.1| RNA polymerase sigma factor [Mycobacterium tuberculosis F11]
gi|167970074|ref|ZP_02552351.1| RNA polymerase sigma factor RpoD [Mycobacterium tuberculosis H37Ra]
gi|224991070|ref|YP_002645759.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798215|ref|YP_003031216.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 1435]
gi|254551759|ref|ZP_05142206.1| RNA polymerase sigma factor [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289448358|ref|ZP_06438102.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289762874|ref|ZP_06522252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|294994205|ref|ZP_06799896.1| RNA polymerase sigma factor [Mycobacterium tuberculosis 210]
gi|297635311|ref|ZP_06953091.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 4207]
gi|297732307|ref|ZP_06961425.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN R506]
gi|306780885|ref|ZP_07419222.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|306790106|ref|ZP_07428428.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|306798608|ref|ZP_07436910.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|306804467|ref|ZP_07441135.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|306807495|ref|ZP_07444163.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|306968762|ref|ZP_07481423.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|307080806|ref|ZP_07489976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|313659640|ref|ZP_07816520.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN V2475]
gi|340627704|ref|YP_004746156.1| RNA polymerase sigma factor SIGA [Mycobacterium canettii CIPT
140010059]
gi|375295482|ref|YP_005099749.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|378772433|ref|YP_005172166.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|383308467|ref|YP_005361278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|385991988|ref|YP_005910286.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|385995609|ref|YP_005913907.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|385999483|ref|YP_005917782.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|392387335|ref|YP_005308964.1| sigA [Mycobacterium tuberculosis UT205]
gi|392431690|ref|YP_006472734.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|397674612|ref|YP_006516147.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|424805043|ref|ZP_18230474.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|424948361|ref|ZP_18364057.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|449064770|ref|YP_007431853.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
gi|61234251|sp|P0A602.1|RPOD_MYCTU RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|61234258|sp|P0A603.1|RPOD_MYCBO RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|1072023|gb|AAA81643.1| sigma factor [Mycobacterium bovis]
gi|1072025|gb|AAA81644.1| sigma factor [Mycobacterium tuberculosis str. Erdman = ATCC 35801]
gi|1171102|gb|AAA86043.1| sigma factor MysA [Mycobacterium tuberculosis H37Rv]
gi|13882532|gb|AAK47092.1| RNA polymerase principal sigma factor SigA [Mycobacterium
tuberculosis CDC1551]
gi|31619469|emb|CAD94907.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium bovis
AF2122/97]
gi|121494226|emb|CAL72704.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506696|gb|ABQ74505.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148722420|gb|ABR07045.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis F11]
gi|224774185|dbj|BAH26991.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319718|gb|ACT24321.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
1435]
gi|289421316|gb|EFD18517.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289710380|gb|EFD74396.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|308326286|gb|EFP15137.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|308333457|gb|EFP22308.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|308341125|gb|EFP29976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|308346090|gb|EFP34941.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|308348951|gb|EFP37802.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|308353649|gb|EFP42500.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|308361450|gb|EFP50301.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|326904319|gb|EGE51252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|328457987|gb|AEB03410.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|339295563|gb|AEJ47674.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|339299181|gb|AEJ51291.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|340005894|emb|CCC45060.1| RNA polymerase sigma factor SIGA (sigma-A) [Mycobacterium canettii
CIPT 140010059]
gi|341602616|emb|CCC65292.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220530|gb|AEN01161.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|356594754|gb|AET19983.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|358232876|dbj|GAA46368.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|378545886|emb|CCE38164.1| sigA [Mycobacterium tuberculosis UT205]
gi|380722420|gb|AFE17529.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|392053099|gb|AFM48657.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|395139517|gb|AFN50676.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|440582180|emb|CCG12583.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium
tuberculosis 7199-99]
gi|444896240|emb|CCP45501.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|449033278|gb|AGE68705.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
Length = 528
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 195 GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRP 253
+ K + LL E + L+ +K + ++ + L+ +L PS + A ++ + +
Sbjct: 63 AFFKEMARYPLLKPEEEIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGLKNER 122
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++ L A+ K++ SN+RLV+SIA+RY N G DL+Q
Sbjct: 123 QLENRLYRGRAAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 165
>gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae]
Length = 576
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER P+ +
Sbjct: 274 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPTAQ-------- 325
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 326 -RRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 370
>gi|254232809|ref|ZP_04926136.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis C]
gi|124601868|gb|EAY60878.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis C]
Length = 528
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|433627819|ref|YP_007261448.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
gi|432155425|emb|CCK52675.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
Length = 528
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|1072017|gb|AAA81640.1| sigma factor [Mycobacterium bovis]
gi|1072019|gb|AAA81641.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 277 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|393771724|ref|ZP_10360192.1| RNA polymerase primary sigma factor [Novosphingobium sp. Rr 2-17]
gi|392722735|gb|EIZ80132.1| RNA polymerase primary sigma factor [Novosphingobium sp. Rr 2-17]
Length = 673
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 214 LSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSIL-------MECSLAR 266
+SKK K + +++ ER+ E S +AA+ ++ PE + I+ E +A+
Sbjct: 379 MSKKDKKWAAFAENEADPVERIRAEVS--DIAAATGMALPEFRRIVNMVQKGEREARIAK 436
Query: 267 EKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++V +N+RLV+SIA++Y N G DL+Q
Sbjct: 437 KEMVEANLRLVISIAKKYTNRGLQFLDLIQ 466
>gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN]
gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae]
gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae]
gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 574
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER P+ +
Sbjct: 272 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPTAQ-------- 323
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 324 -RRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 368
>gi|406980501|gb|EKE02092.1| RNA polymerase sigma factor [uncultured bacterium]
Length = 348
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 262 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
CS+A+EKLV +N+RLV+SIA++Y G DL+Q
Sbjct: 101 CSIAKEKLVNANLRLVVSIAKKYIGRGLSFLDLIQ 135
>gi|299472120|emb|CBN77105.1| RNA polymerase sigma factor [Ectocarpus siliculosus]
Length = 555
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 200 VVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSIL 259
++EE+L EV L++ +KT L+ E G EP+ E+ AASL IS EL +
Sbjct: 181 TIAEEILLVEEVKILARYLKTREQLE------AELGGREPTREEWAASLNISTEELAHQM 234
Query: 260 MECSLAREKLVMSNVRLVMSIAQRYDNM----GADMADLVQ 296
+ + A+E++V +NV L++ +A+R+ G +D++Q
Sbjct: 235 VASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQ 275
>gi|72162538|ref|YP_290195.1| RNA polymerase sigma factor [Thermobifida fusca YX]
gi|71916270|gb|AAZ56172.1| carbamoyl-phosphate synthase L chain, ATP-binding [Thermobifida
fusca YX]
Length = 616
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL + KL K G E + E+ R
Sbjct: 319 VKDYLKQIGKVPLLNAEQEVELAKRIEAGL-FAEEKLSKK---GHELTPEE--------R 366
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A++ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 367 EELEWIAEDGKRAKKHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 410
>gi|320096194|ref|ZP_08027783.1| DNA-directed RNA polymerase sigma subunit RpoD [Actinomyces sp.
oral taxon 178 str. F0338]
gi|319976875|gb|EFW08629.1| DNA-directed RNA polymerase sigma subunit RpoD [Actinomyces sp.
oral taxon 178 str. F0338]
Length = 543
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL A+ V L+++I+ GL + +LK R S E R
Sbjct: 246 VKDYLKQIGKVSLLNAAQEVDLARRIEAGLYAE---YKLKNRADEMTSKE---------R 293
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 294 RELHFLAQDGQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQ 337
>gi|433631804|ref|YP_007265432.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
gi|432163397|emb|CCK60805.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
Length = 520
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 218 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 268
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 269 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 314
>gi|298490007|ref|YP_003720184.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231925|gb|ADI63061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 417
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSL----------------------ARE 267
RL LG PS+E+ A + I +L+ L+E A+E
Sbjct: 121 RLSSELGHRPSLERWAKTAGIDLADLKPTLLEGKRRWAEIAKLKVEELENVQSQGLQAKE 180
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 181 HMIKANLRLVVSVAKKYQNRGLELLDLVQ 209
>gi|581612|emb|CAA37172.1| unnamed protein product [Streptomyces coelicolor A3(2)]
Length = 396
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL+ AE V L+++++ GL + E+L C P ++ A +L
Sbjct: 103 YLREIGRIPLLSAAEEVDLARRVEAGLFAE-------EKLRCSPGLDDRLAL------DL 149
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ LA+ +L+ +N+RLV+S+A+RY G M DLVQ
Sbjct: 150 DRLVVLGRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 190
>gi|413936261|gb|AFW70812.1| hypothetical protein ZEAMMB73_615999 [Zea mays]
Length = 327
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 13/82 (15%)
Query: 144 VPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSE 203
V V SG+S RQRR+N ++ Q G K + ISPEL Q+R + +++ + S+
Sbjct: 137 VVVARSGISVRQRRMNDRR----------QGTGRKSV--TISPELTQSRNRVHLRSIFSK 184
Query: 204 ELLTHAEVVRLSKKIKTGLSLD 225
+LLTH + + L+ K +S++
Sbjct: 185 DLLTHKQDI-LTHKFDEHISIN 205
>gi|326384438|ref|ZP_08206118.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
gi|326196783|gb|EGD53977.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
Length = 466
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 153 ARQRRLNSKKKILSQNKSILQQNGSKQLR-SMISPELIQ--NRLKGYVKGVVSEELLTHA 209
A+ R +KK+ ++ + ++ S+ LR + EL + ++ Y+K + LL
Sbjct: 123 AKGRGAKAKKEDEAKPDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAE 182
Query: 210 EVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKL 269
E V L+K+I+ GL + R+ E S E+L+ + R +L I + + A+ L
Sbjct: 183 EEVELAKRIEAGLFATERLRRVME------SGEKLSVA---QRRDLSWISRDGNRAKNHL 233
Query: 270 VMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +N+RLV+S+A+RY G DL+Q
Sbjct: 234 LEANLRLVVSLAKRYTGRGMAFLDLIQ 260
>gi|295839080|ref|ZP_06826013.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
gi|295827312|gb|EDY44634.2| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
Length = 360
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 17/112 (15%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL 244
+P+L + Y++ + LL A+ V L+++++ GL + KL G P +L
Sbjct: 60 APDLFRQ----YLREIGRIPLLNAADEVELARRVEAGL-FAEEKL-----AGPGPLDTRL 109
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A +L +++ A+ +L+ SN+RLV+S+A+RY G M DLVQ
Sbjct: 110 AL-------DLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQ 154
>gi|427709662|ref|YP_007052039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427362167|gb|AFY44889.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 59/104 (56%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LL H + + K+++ +SL K +L +L +P+ + A +++S
Sbjct: 25 VRTYLHEIGRIPLLDHEQEINFGKQVQQMMSLLTAKEKLVIQLNRQPTQLEFAEYIKLSE 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL L + A+E+++ +N+RLV+SIA++Y D DL+Q
Sbjct: 85 SELLQQLQQGYQAKEQMIRANLRLVVSIAKKYQRRNLDFLDLIQ 128
>gi|75907387|ref|YP_321683.1| RNA polymerase sigma factor SigC [Anabaena variabilis ATCC 29413]
gi|75701112|gb|ABA20788.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena variabilis ATCC
29413]
Length = 416
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSL----------------------ARE 267
RL LG PS+E+ AA+ I+ +L+ IL E ++E
Sbjct: 120 RLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|302802267|ref|XP_002982889.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
gi|302818650|ref|XP_002990998.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300141329|gb|EFJ08042.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300149479|gb|EFJ16134.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
Length = 292
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 290
+ E+LG EP+ + A +L+I EL+ L R +V SN+ LV+ +A+++ G
Sbjct: 13 MSEQLGREPTFREWAEALKIEPQELRRKLKHAKRCRTNMVSSNLGLVIKVARKFGLKGTT 72
Query: 291 MADLVQ 296
+ DL+Q
Sbjct: 73 IEDLIQ 78
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 61/104 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ + LLTH + + L K+++ + L + K L+E LG E + E+ IS+
Sbjct: 20 VRTYLHEIGRVPLLTHEQEIILGKQVQKMMKLIEQKEELEEELGREATDEEWTQKAGISQ 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
ELQ + E + A+ K++ +N+RLV++IA++Y + DL+Q
Sbjct: 80 EELQKAMREGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|17229184|ref|NP_485732.1| RNA polymerase sigma factor SigC [Nostoc sp. PCC 7120]
gi|20141790|sp|Q03066.2|RPSC_ANASP RecName: Full=RNA polymerase sigma-C factor
gi|17135512|dbj|BAB78058.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSL----------------------ARE 267
RL LG PS+E+ AA+ I+ +L+ IL E ++E
Sbjct: 120 RLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|418467800|ref|ZP_13038669.1| RNA polymerase principal sigma factor [Streptomyces coelicoflavus
ZG0656]
gi|371551646|gb|EHN78925.1| RNA polymerase principal sigma factor [Streptomyces coelicoflavus
ZG0656]
Length = 332
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 187 ELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
EL L G Y+ + LL A+ V LS+ I+ G+ L E G + +
Sbjct: 29 ELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGV-FARQVLEGYEETGADAT----- 82
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ELQ+++ E A++ + SN+RLV+++A+RY G + DL+Q
Sbjct: 83 ------REELQTLIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQ 127
>gi|142114|gb|AAA22047.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSL----------------------ARE 267
RL LG PS+E+ AA+ I+ +L+ IL E ++E
Sbjct: 120 RLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|413936260|gb|AFW70811.1| hypothetical protein ZEAMMB73_615999 [Zea mays]
Length = 374
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 13/82 (15%)
Query: 144 VPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSE 203
V V SG+S RQRR+N ++ Q G K + ISPEL Q+R + +++ + S+
Sbjct: 137 VVVARSGISVRQRRMNDRR----------QGTGRKSV--TISPELTQSRNRVHLRSIFSK 184
Query: 204 ELLTHAEVVRLSKKIKTGLSLD 225
+LLTH + + L+ K +S++
Sbjct: 185 DLLTHKQDI-LTHKFDEHISIN 205
>gi|117928920|ref|YP_873471.1| RNA polymerase subunit sigma 28 [Acidothermus cellulolyticus 11B]
gi|117649383|gb|ABK53485.1| RNA polymerase, sigma 28 subunit [Acidothermus cellulolyticus 11B]
Length = 413
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 20/113 (17%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGL----SLDDHKLRLKERLGCEPSMEQ 243
L + ++ Y+ + LL A+ V L+K+I+ G+ L+D L+L E
Sbjct: 111 LSHDPVRNYLNEIGRTPLLDAAQEVELAKRIEAGVYADVKLNDPTLQLTEE--------- 161
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R +L++I + + A+ ++ +N+RLV+S+A+RY N G D++Q
Sbjct: 162 -------ERRDLEAIRDDGARAKAHMLEANLRLVVSVAKRYSNRGMAFLDVIQ 207
>gi|163868737|ref|YP_001609951.1| RNA polymerase sigma factor RpoD [Bartonella tribocorum CIP 105476]
gi|161018398|emb|CAK01956.1| RNA polymerase sigma factor [Bartonella tribocorum CIP 105476]
Length = 671
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 241 MEQLAASLRISRPELQSILM-------ECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
++ LA + IS E + I+M E ++A++++V SN+RLV+SIA++Y N G D
Sbjct: 402 IQNLAQATAISIGEFRRIVMQVQKGERESTIAKKEMVESNLRLVISIAKKYTNRGLQFLD 461
Query: 294 LVQ 296
L+Q
Sbjct: 462 LIQ 464
>gi|67920853|ref|ZP_00514372.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856970|gb|EAM52210.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 297
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 21/104 (20%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+ AE ++L+++I+ L L + EQL SR
Sbjct: 10 VRHYLQSIGKTPLLSSAEEIKLAEEIQAMLPLLEK--------------EQL------SR 49
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E + I+ + ARE+++ +N+RLV+SIA++Y N G + DL+Q
Sbjct: 50 EE-EKIVAKGQKARERMIEANLRLVVSIAKKYLNSGLSLLDLIQ 92
>gi|255325126|ref|ZP_05366232.1| RNA polymerase major sigma subunit [Corynebacterium
tuberculostearicum SK141]
gi|311739588|ref|ZP_07713423.1| RNA polymerase sigma factor rpoD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255297691|gb|EET77002.1| RNA polymerase major sigma subunit [Corynebacterium
tuberculostearicum SK141]
gi|311305404|gb|EFQ81472.1| RNA polymerase sigma factor rpoD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 490
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR-IS 251
++ Y+K + LL + V L+K+I+ GL H++ E+ E AA L +
Sbjct: 184 VRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAQ-HRMDEMEKARAEGDK---AAKLSPME 239
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L+SI + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 240 KRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 284
>gi|422011592|ref|ZP_16358389.1| RNA polymerase sigma factor RpoD [Actinomyces georgiae F0490]
gi|394764503|gb|EJF46279.1| RNA polymerase sigma factor RpoD [Actinomyces georgiae F0490]
Length = 531
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL A+ V L+++I+ GL + +LK R S E R
Sbjct: 234 VKDYLKQIGKVSLLNAAQEVDLARRIEAGLYAE---YKLKNRADEMTSKE---------R 281
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 282 RELHFLAQDGQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQ 325
>gi|306836272|ref|ZP_07469254.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
gi|304567864|gb|EFM43447.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
Length = 492
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR- 249
+ ++ Y+K + LL + V L+K+I+ GL H++ E+ E AA L
Sbjct: 184 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAQ-HRMDEMEKARAEGDK---AAKLSP 239
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + +L+SI + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 240 MEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 286
>gi|227503480|ref|ZP_03933529.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
gi|227075983|gb|EEI13946.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
Length = 493
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR- 249
+ ++ Y+K + LL + V L+K+I+ GL H++ E+ E AA L
Sbjct: 185 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAQ-HRMDEMEKARAEGDK---AAKLSP 240
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + +L+SI + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 241 MEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 287
>gi|296117743|ref|ZP_06836327.1| RNA polymerase principal sigma factor SigB [Corynebacterium
ammoniagenes DSM 20306]
gi|295969474|gb|EFG82715.1| RNA polymerase principal sigma factor SigB [Corynebacterium
ammoniagenes DSM 20306]
Length = 334
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL+ + V L++ I+ GL + +KL E+L R + ++
Sbjct: 41 YLNGIGKTALLSAEDEVELAQAIEIGLYAE-YKLNTAEKL------------TRAEKRDM 87
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 88 KILVKEGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 128
>gi|283457795|ref|YP_003362387.1| DNA-directed RNA polymerase, sigma subunit [Rothia mucilaginosa
DY-18]
gi|283133802|dbj|BAI64567.1| DNA-directed RNA polymerase, sigma subunit [Rothia mucilaginosa
DY-18]
Length = 460
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
+++P + +K Y+K + LL + V L+K+I+ GL + HKL P M+
Sbjct: 154 VVTPGATADPVKDYLKQIGKVSLLNAQQEVDLAKRIEAGLYAE-HKL------AENPDMD 206
Query: 243 Q-LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ L +LR ++ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 207 KDLKKALRW-------VVHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 254
>gi|326773500|ref|ZP_08232783.1| RNA polymerase sigma (70) factor RpoD, partial [Actinomyces
viscosus C505]
gi|326636730|gb|EGE37633.1| RNA polymerase sigma (70) factor RpoD [Actinomyces viscosus C505]
Length = 311
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
G + + +++ + +K Y+K + LL + V L+K+I+ GL + RL E
Sbjct: 147 GDEPAQRVVTAGATADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLYAEH---RLAE-- 201
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
L A LR EL + + A+ L+ +N+RLV+S+A+RY G DL+
Sbjct: 202 ----EGNDLPAKLR---RELHWVAQDGQRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLI 254
Query: 296 Q 296
Q
Sbjct: 255 Q 255
>gi|291287657|ref|YP_003504473.1| RpoD subfamily RNA polymerase sigma-70 subunit [Denitrovibrio
acetiphilus DSM 12809]
gi|290884817|gb|ADD68517.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Denitrovibrio
acetiphilus DSM 12809]
Length = 626
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Query: 192 RLKGYVKGV-VSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
R Y V V+E+ LT A R G++L D+++ +K+ + +++ SL
Sbjct: 315 RYTDYTDAVSVTEDELTRACENR-------GMALPDYEIIVKKYKKAKKGLDECINSLGF 367
Query: 251 SRPELQ----SILM---ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ EL S+LM E A+ KL+ +N+RLV+SIA++Y N G DL+Q
Sbjct: 368 DKAELDVIHDSLLMGENETEKAKSKLIEANLRLVVSIAKKYTNRGLQFLDLIQ 420
>gi|126434760|ref|YP_001070451.1| RNA polymerase sigma factor [Mycobacterium sp. JLS]
gi|126234560|gb|ABN97960.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 480
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L E+ G + ++Q
Sbjct: 178 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFATQKLAELAEK-GEKLPVQQ------- 229
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++Q I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 230 -RRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 274
>gi|312200424|ref|YP_004020485.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311231760|gb|ADP84615.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 403
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ + LLT V L+K+I+ GL HKL E ++E+++ R+ +L
Sbjct: 109 YLASIGKTPLLTAEGEVDLAKRIEAGL-FAGHKL--------ETAVEEMSPGQRL---DL 156
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + +A +LV +N+RLV+SIA+RY G D+VQ
Sbjct: 157 IAVERDGQVAARQLVEANLRLVVSIAKRYAGRGMLFLDVVQ 197
>gi|108799152|ref|YP_639349.1| RNA polymerase sigma factor [Mycobacterium sp. MCS]
gi|119868267|ref|YP_938219.1| RNA polymerase sigma factor [Mycobacterium sp. KMS]
gi|108769571|gb|ABG08293.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694356|gb|ABL91429.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
Length = 480
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L E+ G + ++Q
Sbjct: 178 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFATQKLAELAEK-GEKLPVQQ------- 229
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++Q I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 230 -RRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 274
>gi|434405397|ref|YP_007148282.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
gi|428259652|gb|AFZ25602.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
Length = 412
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSL----------------------ARE 267
RL LG PS+E+ A + I P+L+ L A+E
Sbjct: 116 RLSSELGHRPSLERWATTAGIELPDLKPTLANGKRRWAETAKLTVEELDQVQSQGLQAKE 175
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 176 HMIKANLRLVVSVAKKYQNRGLELLDLVQ 204
>gi|425453974|ref|ZP_18833723.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
gi|389799829|emb|CCI20645.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
Length = 443
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPEL----------------------QSILMECSLARE 267
+L RL PS+E+ A + +IS EL + I+ + A+E
Sbjct: 139 QLTARLAHRPSLERWAKTAQISVSELKNALKAGKQRWAHLAGLEVGELEEIIALGTRAKE 198
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 199 QMIKANLRLVVSVAKKYQNRGLELLDLIQ 227
>gi|296129901|ref|YP_003637151.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cellulomonas
flavigena DSM 20109]
gi|296021716|gb|ADG74952.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cellulomonas
flavigena DSM 20109]
Length = 495
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL ++ ++ L EP + R
Sbjct: 198 VKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEEKLAETRDSL--EPKL----------R 245
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 246 RELEWIAQDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 289
>gi|441521299|ref|ZP_21002960.1| putative RNA polymerase sigma factor [Gordonia sihwensis NBRC
108236]
gi|441459131|dbj|GAC60921.1| putative RNA polymerase sigma factor [Gordonia sihwensis NBRC
108236]
Length = 465
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + R+ E S E+L+ +
Sbjct: 163 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFATERLRRVME------SGEKLSVA--- 213
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R +L I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 214 QRRDLSWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 259
>gi|377561650|ref|ZP_09791093.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
gi|377521212|dbj|GAB36258.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
Length = 486
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 133 TDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLR-SMISPELIQ- 190
T++P+K T P + ++K + + + S+ LR + EL
Sbjct: 127 TETPAKTTAGATPPVAPPADKSTKDADAK----TAGDFVWDEEESEALRQARKDAELTAS 182
Query: 191 -NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
+ ++ Y+K + LL E V L+K+I+ GL + R+ E S E+L+ +
Sbjct: 183 ADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATERLRRIME------SGEKLSTA-- 234
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 235 -QKRDLNWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 280
>gi|416379954|ref|ZP_11684013.1| RNA polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357265758|gb|EHJ14479.1| RNA polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 297
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 21/104 (20%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LL+ AE ++L+++I+ L L + KE+L SR
Sbjct: 10 VRHYLQSIGKTPLLSSAEEIKLAEEIQAMLPLLE-----KEQL---------------SR 49
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E + I+ + ARE+++ +N+RLV+SIA++Y N G + DL+Q
Sbjct: 50 EE-EKIVAKGQKARERMIEANLRLVVSIAKKYLNSGLSLLDLIQ 92
>gi|324997280|ref|ZP_08118392.1| RNA polymerase sigma factor [Pseudonocardia sp. P1]
Length = 469
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL E V L+K+I+ GL + +L E S ++L+ +R
Sbjct: 169 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYGAERIRKLFE------SNDKLSPQMR--- 219
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I+ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 220 RDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 263
>gi|296139587|ref|YP_003646830.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027721|gb|ADG78491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 483
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + R ER G +P++
Sbjct: 181 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFAEQMINRWVER-GEKPAIG-------- 231
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 232 IRRDMNWIARDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 277
>gi|271968332|ref|YP_003342528.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like
protein [Streptosporangium roseum DSM 43021]
gi|270511507|gb|ACZ89785.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like
protein [Streptosporangium roseum DSM 43021]
Length = 561
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL + E+LG + ++L +R
Sbjct: 264 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAE-------EQLGTD--GDKLPVDVRA-- 312
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 313 -ELEWIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 355
>gi|255325135|ref|ZP_05366241.1| RNA polymerase sigma factor RpoD [Corynebacterium
tuberculostearicum SK141]
gi|255297700|gb|EET77011.1| RNA polymerase sigma factor RpoD [Corynebacterium
tuberculostearicum SK141]
Length = 365
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL+ + V L++ I+ GL + +KL E+L R + +L
Sbjct: 72 YLNGIGKTALLSAEDEVELAQAIEVGLYAE-YKLNNAEKL------------TRAEKRDL 118
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 119 KILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 159
>gi|443622141|ref|ZP_21106681.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
gi|443344361|gb|ELS58463.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
Length = 326
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 17/108 (15%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L Y+ + + LLT A+ VRL+++I+ G+ R E + Q A R
Sbjct: 26 LGQYLAQIAATPLLTAADEVRLAQRIEAGV-----------RAAAE--LRQADAGERAVT 72
Query: 253 PE----LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
PE L+++ + A++ ++ +N+RLV+++A+R+ + G + D++Q
Sbjct: 73 PERRRDLETVARDGRAAKDHMIRANLRLVVAMAKRHAHRGVPLLDVIQ 120
>gi|21221637|ref|NP_627416.1| RNA polymerase principal sigma factor [Streptomyces coelicolor
A3(2)]
gi|289771070|ref|ZP_06530448.1| RNA polymerase principal sigma factor hrdD [Streptomyces lividans
TK24]
gi|19856654|sp|P18249.2|HRDD_STRCO RecName: Full=RNA polymerase principal sigma factor HrdD
gi|7799522|emb|CAB90986.1| RNA polymerase principal sigma factor [Streptomyces coelicolor
A3(2)]
gi|289701269|gb|EFD68698.1| RNA polymerase principal sigma factor hrdD [Streptomyces lividans
TK24]
Length = 332
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 187 ELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
EL L G Y+ + LL A+ V LS+ I+ G+ L E G + +
Sbjct: 29 ELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGV-FARQVLEGYEETGADAT----- 82
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ELQ+++ E A++ + SN+RLV+++A+RY G + DL+Q
Sbjct: 83 ------REELQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQ 127
>gi|334136658|ref|ZP_08510118.1| RNA polymerase sigma-F factor [Paenibacillus sp. HGF7]
gi|333605857|gb|EGL17211.1| RNA polymerase sigma-F factor [Paenibacillus sp. HGF7]
Length = 251
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 263 SLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQV 297
SLARE+LV SN+RLV S+ QR+ N G + DL Q+
Sbjct: 30 SLARERLVNSNIRLVWSVVQRFLNRGYEAEDLFQI 64
>gi|229820409|ref|YP_002881935.1| RNA polymerase sigma factor [Beutenbergia cavernae DSM 12333]
gi|229566322|gb|ACQ80173.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Beutenbergia
cavernae DSM 12333]
Length = 499
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL + E L SME ++ R
Sbjct: 203 VKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE-------ETLAAGGSME-----FKLRR 250
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 251 -ELEWIAADGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 293
>gi|227504896|ref|ZP_03934945.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
gi|227198489|gb|EEI78537.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
Length = 337
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL+ + V L+++I+ GL + +KL E++ R + +L
Sbjct: 44 YLNGIGKTALLSAEDEVELAQRIEVGLYAE-YKLANAEKI------------TRAEKRDL 90
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ ++ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 91 KILVREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 131
>gi|172040581|ref|YP_001800295.1| RNA polymerase sigma factor [Corynebacterium urealyticum DSM 7109]
gi|171851885|emb|CAQ04861.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7109]
Length = 545
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL + V L+K+I+ GL + RLK+ + S E+L+ ++R
Sbjct: 245 VRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAN---YRLKQ---IKESGERLSP---MNR 295
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 296 RDLREIDRDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 339
>gi|359427058|ref|ZP_09218133.1| RNA polymerase sigma factor SigB [Gordonia amarae NBRC 15530]
gi|358237671|dbj|GAB07715.1| RNA polymerase sigma factor SigB [Gordonia amarae NBRC 15530]
Length = 332
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K+I+ GL H L +R+ AA R +L
Sbjct: 39 YLNGIGRTALLNAEQEVELAKQIEVGLYAR-HLLDSGKRM--------TAAKKR----DL 85
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
I+ E +AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 86 AIIVREGEIARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 126
>gi|254282580|ref|ZP_04957548.1| RNA polymerase principal sigma factor SigA [gamma proteobacterium
NOR51-B]
gi|219678783|gb|EED35132.1| RNA polymerase principal sigma factor SigA [gamma proteobacterium
NOR51-B]
Length = 429
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R S L+S L + + AR+ LVM N+RLV SIA RY G + DLVQ
Sbjct: 172 RDSLKALRSALNDYTKARDALVMHNLRLVYSIAARYKGRGVNYLDLVQ 219
>gi|50955189|ref|YP_062477.1| ECF subfamily RNA polymerase sigma-70 factor [Leifsonia xyli subsp.
xyli str. CTCB07]
gi|50951671|gb|AAT89372.1| RNA polymerase, sigma-70 family factor [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 308
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
+M E+ + ++ Y+ + LLT + V L+K+I+ G+ + RL R G P
Sbjct: 5 TMTVLEVTNDPVRDYLNSIGRTWLLTAEDEVSLAKRIEVGVLAGE---RLATRPGLSPRE 61
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ EL + + A E+ + +N+RLV+SIA+RY G + DL+Q
Sbjct: 62 KR----------ELHVLSDDGKRAFERFIEANLRLVVSIAKRYAGRGLAVMDLIQ 106
>gi|296117756|ref|ZP_06836340.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
gi|295969487|gb|EFG82728.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
Length = 471
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR- 249
+ ++ Y+K + LL + V L+++I+ GL H++ ERL E AA L
Sbjct: 163 DSVRAYLKQIGKVALLNAEQEVSLAERIEAGLYAQ-HRMDEMERLTAEGDA---AAKLSP 218
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 219 AQKRDLRWIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 265
>gi|428300095|ref|YP_007138401.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
gi|428236639|gb|AFZ02429.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
Length = 442
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSIL--------------------MECS--LARE 267
RL LG PSME+ A++ + EL+ IL M+ S ++E
Sbjct: 146 RLASELGHRPSMERWASTAGVDVFELKQILAKGKRRWAEVAKLTVEELEQMQSSGLQSKE 205
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 206 HMIKANLRLVVSVAKKYQNRGLELLDLVQ 234
>gi|422303174|ref|ZP_16390528.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
gi|389791889|emb|CCI12331.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
Length = 435
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPEL----------------------QSILMECSLARE 267
+L RL PS+E+ A + +IS EL + I+ + A+E
Sbjct: 139 QLTARLAHRPSLERWAKTAQISVSELKNALKAGKQHWAHLAGLEVGELEEIIALGTRAKE 198
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 199 QMIKANLRLVVSVAKKYQNRGLELLDLIQ 227
>gi|291439967|ref|ZP_06579357.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
gi|291342862|gb|EFE69818.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
Length = 335
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+++K Y++ + LLT + V L+K+I+ GL + RL L EP +E
Sbjct: 35 DQVKDYLRLISRVRLLTAEQEVELAKRIEAGL----YAERL---LAEEPVLEPR------ 81
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R EL + + A+ L +N+RLV+S+A+RY G DL+Q
Sbjct: 82 YRRELGLLAEDGRRAKNHLTEANLRLVVSVAKRYTGRGLQFMDLIQ 127
>gi|448823559|ref|YP_007416724.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7111]
gi|448277056|gb|AGE36480.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7111]
Length = 545
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL + V L+K+I+ GL + RLK+ + S E+L+ ++R
Sbjct: 245 VRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAN---YRLKQ---IKESGERLSP---MNR 295
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 296 RDLREIDRDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 339
>gi|256375630|ref|YP_003099290.1| RNA polymerase sigma factor SigB [Actinosynnema mirum DSM 43827]
gi|255919933|gb|ACU35444.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 330
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 15/102 (14%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP-E 254
Y+ G+ LLT A+ V L+K+I+ G+ H L + +L R E
Sbjct: 37 YLNGIGKTALLTAAQEVELAKRIEAGV-FAHHVL-------------ETTTALNAGRADE 82
Query: 255 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L++++ + A+ L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 83 LRALVRDGLRAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 124
>gi|257068601|ref|YP_003154856.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium faecium DSM
4810]
gi|256559419|gb|ACU85266.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium faecium DSM
4810]
Length = 433
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL A+ V L+++I+ GL + ++L + S L +
Sbjct: 131 VKDYLKQIGKVALLNAAQEVELAERIEAGLYAE-------QKLKGDDSFRDKNGRLTKAG 183
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL I + A++ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 184 RELTMIADDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 227
>gi|258653916|ref|YP_003203072.1| RNA polymerase sigma factor SigB [Nakamurella multipartita DSM
44233]
gi|258557141|gb|ACV80083.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nakamurella
multipartita DSM 44233]
Length = 334
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 19/104 (18%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRIS---R 252
Y+ G+ LLT + V L+K+I+ G+ + L + + +S R
Sbjct: 41 YLNGIGKTALLTAEQEVELAKRIEAGVF----------------AAHVLESDVEMSPQRR 84
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ ++ + AR L+++N+RLV+S+A+RY G + DL+Q
Sbjct: 85 KDLRMVVRDGGRARNHLLVANLRLVVSLAKRYTGRGMPLLDLIQ 128
>gi|75812337|ref|YP_319956.1| sigma-28 [Anabaena variabilis ATCC 29413]
gi|75705093|gb|ABA24767.1| Sigma-28 [Anabaena variabilis ATCC 29413]
Length = 316
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 62/104 (59%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y++ + LLT + + ++++ +++ + + +L ++L EP+ +LA L ++
Sbjct: 9 IRIYLQEIGQFPLLTSDQEITYGRQVQQMIAIQEQQQQLSQQLHREPTTAELANFLNTTQ 68
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ IL A++K++ +N+RLV+SIA++Y + DLVQ
Sbjct: 69 AQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQ 112
>gi|419967834|ref|ZP_14483708.1| RNA polymerase sigma factor, partial [Rhodococcus opacus M213]
gi|414566728|gb|EKT77547.1| RNA polymerase sigma factor, partial [Rhodococcus opacus M213]
Length = 297
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + ++ + L S E+L A+
Sbjct: 155 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGL----YATQIMQELS--DSGEKLPAA--- 205
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 206 QRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 251
>gi|25028367|ref|NP_738421.1| RNA polymerase sigma factor SigB [Corynebacterium efficiens YS-314]
gi|259507424|ref|ZP_05750324.1| RNA polymerase principal sigma factor SigB [Corynebacterium
efficiens YS-314]
gi|23493652|dbj|BAC18621.1| sigma factor SigB [Corynebacterium efficiens YS-314]
gi|259164989|gb|EEW49543.1| RNA polymerase principal sigma factor SigB [Corynebacterium
efficiens YS-314]
Length = 333
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
GS++ ++ +P Q+ ++ Y+ G+ LLT + V L++ I+ GL + +KL+ +
Sbjct: 21 GSRRGQTNDNPS--QDLVRVYLNGIGKTALLTAEDEVELAQTIEVGLYAE-YKLKHSD-- 75
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
EP R + +L+ + E AR L+ +N+RLV+S+A+RY G + DL+
Sbjct: 76 --EPLT-------RAMKRDLKVLAKEGKKARAHLLEANLRLVVSLAKRYTGRGMPLLDLI 126
Query: 296 Q 296
Q
Sbjct: 127 Q 127
>gi|386005579|ref|YP_005923858.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
gi|380726067|gb|AFE13862.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
Length = 324
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL E V L+K+I+ GL L ER E+L A+ R
Sbjct: 24 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA---QR 74
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 75 RDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 118
>gi|284042443|ref|YP_003392783.1| RpoD subfamily RNA polymerase sigma-70 subunit [Conexibacter woesei
DSM 14684]
gi|283946664|gb|ADB49408.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Conexibacter
woesei DSM 14684]
Length = 285
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E++ + RI R +L A+E++V SN+RLVMSIA+ Y G M DLVQ
Sbjct: 35 EEIELARRIERGDLS--------AKERMVNSNLRLVMSIARHYQGQGLGMGDLVQ 81
>gi|329940007|ref|ZP_08289289.1| RNA polymerase sigma factor [Streptomyces griseoaurantiacus M045]
gi|329300833|gb|EGG44729.1| RNA polymerase sigma factor [Streptomyces griseoaurantiacus M045]
Length = 512
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL S ++LA L+
Sbjct: 216 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KL---------ASADKLAPKLK--- 262
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 263 RELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 306
>gi|48743|emb|CAA37174.1| unnamed protein product [Streptomyces coelicolor A3(2)]
Length = 332
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 187 ELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
EL L G Y+ + LL A+ V LS+ I+ G+ L E G + +
Sbjct: 29 ELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGV-FARQVLEGYEETGADAT----- 82
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ELQ+++ E A++ + SN+RLV+++A+RY G + DL+Q
Sbjct: 83 ------REELQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQ 127
>gi|21449377|gb|AAM54109.1|AF453501_35 RNA polymerase sigma factor [Actinosynnema pretiosum subsp.
auranticum]
Length = 348
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Query: 194 KGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP 253
+ Y+K + LLT + V L+++++ GL E ++ A+ RP
Sbjct: 52 RAYLKAIGRVRLLTADQEVELARRVEAGLY-------------AEHLLDLPPAARGSRRP 98
Query: 254 -ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ ++ + A++ L+ +N+RLV+SIA+RY G + D++Q
Sbjct: 99 VELRRVVRDGQRAKDHLLEANLRLVVSIAKRYTGKGMALLDVIQ 142
>gi|395782793|ref|ZP_10463165.1| RNA polymerase sigma factor rpoD [Bartonella rattimassiliensis
15908]
gi|395416671|gb|EJF83041.1| RNA polymerase sigma factor rpoD [Bartonella rattimassiliensis
15908]
Length = 671
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 241 MEQLAASLRISRPELQSILM-------ECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
++ LA IS E + I+M E ++A++++V SN+RLV+SIA++Y N G D
Sbjct: 402 IQNLAQETAISIGEFRRIVMQVQKGERESTIAKKEMVESNLRLVISIAKKYTNRGLQFLD 461
Query: 294 LVQ 296
L+Q
Sbjct: 462 LIQ 464
>gi|320531403|ref|ZP_08032370.1| RNA polymerase sigma factor RpoD [Actinomyces sp. oral taxon 171
str. F0337]
gi|320136375|gb|EFW28356.1| RNA polymerase sigma factor RpoD [Actinomyces sp. oral taxon 171
str. F0337]
Length = 537
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
G + + +++ + +K Y+K + LL + V L+K+I+ GL + H+L K
Sbjct: 223 GDEPAQRVVTAGATADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLYAE-HRLAEK--- 278
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
L A LR EL + + A+ L+ +N+RLV+S+A+RY G DL+
Sbjct: 279 -----GNDLPAKLRR---ELHWVAQDGQRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLI 330
Query: 296 Q 296
Q
Sbjct: 331 Q 331
>gi|88809466|ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 376
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
ELQ L E AR++++ +N+RLV+++A++Y G ++ DLVQ
Sbjct: 125 ELQQRLREGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQ 167
>gi|118469122|ref|YP_887090.1| RNA polymerase sigma factor [Mycobacterium smegmatis str. MC2 155]
gi|399987104|ref|YP_006567453.1| RNA polymerase sigma factor rpoD [Mycobacterium smegmatis str. MC2
155]
gi|555680|gb|AAA85642.1| sigma factor MysA [Mycobacterium smegmatis]
gi|118170409|gb|ABK71305.1| sigma factor MysA [Mycobacterium smegmatis str. MC2 155]
gi|399231665|gb|AFP39158.1| RNA polymerase sigma factor rpoD [Mycobacterium smegmatis str. MC2
155]
Length = 466
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L E+ G + ++Q
Sbjct: 164 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQKLAELAEK-GEKLPVQQ------- 215
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++Q I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 216 -RRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 260
>gi|427709818|ref|YP_007052195.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
gi|427362323|gb|AFY45045.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
Length = 416
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASL----------------------RISRPELQSILMECSLARE 267
RL LG PS+E+ AA+ +I+ EL+ I + ++E
Sbjct: 120 RLASELGHRPSLERWAATAGVQLSDLKPTLSEGKRRWAEIAKITVEELEQIQSQGLQSKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|225021265|ref|ZP_03710457.1| hypothetical protein CORMATOL_01277 [Corynebacterium matruchotii
ATCC 33806]
gi|224945998|gb|EEG27207.1| hypothetical protein CORMATOL_01277 [Corynebacterium matruchotii
ATCC 33806]
Length = 617
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL + V L+K+I+ GL D R+K+ + ++ A
Sbjct: 309 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAD---YRMKQMEKAYSNGDKEAKLTPA 365
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L++I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 366 VKRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 411
>gi|425443241|ref|ZP_18823466.1| putative RNA polymerase sigma-C factor (fragment) [Microcystis
aeruginosa PCC 9717]
gi|389715506|emb|CCI00140.1| putative RNA polymerase sigma-C factor (fragment) [Microcystis
aeruginosa PCC 9717]
Length = 135
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I+ + A+E+++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 50 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 92
>gi|308232215|ref|ZP_07415319.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308373480|ref|ZP_07667590.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
gi|308214639|gb|EFO74038.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308337452|gb|EFP26303.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
Length = 413
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+
Sbjct: 111 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAA--- 161
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 162 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 207
>gi|13195265|gb|AAK15630.1|AF326348_2 RNA polymerase major sigma subunit [Corynebacterium ammoniagenes]
Length = 467
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR- 249
+ ++ Y+K + LL + V L+++I+ GL H+L ERL E AA L
Sbjct: 159 DSVRAYLKQIGKVALLNAEQEVSLAERIEAGLYAQ-HRLDEMERLIAEGDA---AAKLSP 214
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 215 AQKRDLRWIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 261
>gi|309790481|ref|ZP_07685041.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG-6]
gi|308227468|gb|EFO81136.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG6]
Length = 346
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 17/112 (15%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQL 244
+P+ +Q+ Y++ + LLT E V LS++I+ G + ERL E +QL
Sbjct: 46 TPDAVQH----YLQEIGRVSLLTANEEVELSERIERGDEAE-------ERLATE---DQL 91
Query: 245 AASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + R L+ + + AR L+ +N+RLV+SIA++Y G + DL+Q
Sbjct: 92 SGT---QRRNLEHEVERGNDARRHLIQANLRLVVSIAKKYVGRGLSLLDLIQ 140
>gi|441207686|ref|ZP_20973626.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|440627869|gb|ELQ89674.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 454
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L E+ G + ++Q
Sbjct: 152 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQKLAELAEK-GEKLPVQQ------- 203
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++Q I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 204 -RRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 248
>gi|375142599|ref|YP_005003248.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium
rhodesiae NBB3]
gi|359823220|gb|AEV76033.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
rhodesiae NBB3]
Length = 528
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L L ++ E+L A+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMLELADK------GEKLPAA--- 276
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 277 QRRDMSWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|289758831|ref|ZP_06518209.1| predicted protein [Mycobacterium tuberculosis T85]
gi|289714395|gb|EFD78407.1| predicted protein [Mycobacterium tuberculosis T85]
Length = 330
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L ER E+L A+ R
Sbjct: 228 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAAQRR 281
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 282 ---DMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 324
>gi|448823552|ref|YP_007416717.1| RNA polymerase sigma factor B [Corynebacterium urealyticum DSM
7111]
gi|448277049|gb|AGE36473.1| RNA polymerase sigma factor B [Corynebacterium urealyticum DSM
7111]
Length = 340
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 21/105 (20%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS----LRIS 251
Y+ G+ LLT + V LS++I+ GL EQL S R
Sbjct: 47 YLNGIGKTALLTAEDEVELSQRIEAGLY-----------------AEQLLKSGEPLTRAK 89
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +++ + E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 90 KRDVKILAREGKAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 134
>gi|269126637|ref|YP_003300007.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermomonospora
curvata DSM 43183]
gi|268311595|gb|ACY97969.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermomonospora
curvata DSM 43183]
Length = 444
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K + +LLT + V L+K+I+ GL + +L+ P + R EL
Sbjct: 151 YLKSIGRRQLLTAEQEVELAKRIEAGLYAE---YKLENEPDLPPEL----------REEL 197
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + A+ ++ +N+RLV+S+A++Y + G + D+VQ
Sbjct: 198 EWVAADGREAKSHMLEANLRLVVSVAKKYSDRGLSLLDVVQ 238
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 12/108 (11%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
+ + ++ Y++ + LLT AE V L+KK++ + +D L+ + M L S
Sbjct: 85 LDDPVRMYLQEIGQVPLLTAAEEVDLAKKMEVAHAANDTLLQ-------DDGM--LEHSD 135
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
RIS L+ + AR+ L+ +N+RLV+SIA++Y + G M DLVQ
Sbjct: 136 RIS---LKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQ 180
>gi|256377300|ref|YP_003100960.1| RpoD subfamily RNA polymerase sigma-70 subunit [Actinosynnema mirum
DSM 43827]
gi|255921603|gb|ACU37114.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 349
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Query: 194 KGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRP 253
+ Y+K + LLT + V L+++++ GL E ++ A+ RP
Sbjct: 53 RAYLKAIGRVRLLTADQEVELARRVEAGLY-------------AEHLLDLPPAARGSRRP 99
Query: 254 -ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ ++ + A++ L+ +N+RLV+SIA+RY G + D++Q
Sbjct: 100 IELRRVVRDGQRAKDHLLEANLRLVVSIAKRYTGKGMALLDVIQ 143
>gi|385652975|ref|ZP_10047528.1| RNA polymerase sigma factor [Leucobacter chromiiresistens JG 31]
Length = 404
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 186 PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245
P + +K Y+K + LL AE V L+ +I+ GL + E+L E + +
Sbjct: 101 PGATADPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAE-------EKLSTEKGLPK-- 151
Query: 246 ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ R EL+ + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 152 ---KLER-ELKWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQ 198
>gi|305681425|ref|ZP_07404232.1| RNA polymerase sigma factor RpoD [Corynebacterium matruchotii ATCC
14266]
gi|305659630|gb|EFM49130.1| RNA polymerase sigma factor RpoD [Corynebacterium matruchotii ATCC
14266]
Length = 608
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL + V L+K+I+ GL D R+K+ + ++ A
Sbjct: 300 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAD---YRMKQMEKAYSNGDKEAKLTPA 356
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L++I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 357 VKRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 402
>gi|406925927|gb|EKD62294.1| hypothetical protein ACD_52C00242G0003 [uncultured bacterium]
Length = 354
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+K ++ LLT E V L+K++++ + R K +EQ S EL
Sbjct: 68 YLKEALNNPLLTPKEEVDLAKQMESA-----KRARKK--------LEQRPPSKTKEVNEL 114
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ I+ + ARE L+++N RLV+SIA++ N G + DL+Q
Sbjct: 115 KKIIEKGRDAREHLILANTRLVVSIAKKCQNRGLEFIDLIQ 155
>gi|423715787|ref|ZP_17690008.1| RNA polymerase sigma factor rpoD [Bartonella elizabethae F9251]
gi|395429089|gb|EJF95163.1| RNA polymerase sigma factor rpoD [Bartonella elizabethae F9251]
Length = 671
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 241 MEQLAASLRISRPELQSILM-------ECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
++ LA IS E + I+M E ++A++++V SN+RLV+SIA++Y N G D
Sbjct: 402 IQNLAQETAISIGEFRRIVMQVQKGERESTIAKKEMVESNLRLVISIAKKYTNRGLQFLD 461
Query: 294 LVQ 296
L+Q
Sbjct: 462 LIQ 464
>gi|358461550|ref|ZP_09171710.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357073123|gb|EHI82638.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 416
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 19/110 (17%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
+ ++ Y+ + LLT E V L+K+++ GL + E+LAA
Sbjct: 117 HDSVRQYLSQIGRVRLLTAEEEVDLAKRVEAGLF----------------AAEKLAADTG 160
Query: 250 IS---RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ R +L + + +A+ +LV +N+RLV+SIA+RY G DL+Q
Sbjct: 161 LAVRLRADLTWVERDGEVAKSRLVEANLRLVVSIARRYVGRGMLFLDLIQ 210
>gi|218439766|ref|YP_002378095.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172494|gb|ACK71227.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 418
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 22/101 (21%)
Query: 218 IKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSL------------- 264
+ T ++L + + +L +LG PS+E+ A + +S E++ IL E
Sbjct: 110 LNTFVNLVEKRDQLTSQLGHRPSLEKWADAAEVSVFEVKQILNEGKRHWANLAGLKVQEL 169
Query: 265 ---------AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
A+ ++ +N+RLV+S+A+RY N G ++ DL+Q
Sbjct: 170 EQIQKAGIEAKNHMIKANLRLVVSVAKRYQNRGLELLDLIQ 210
>gi|392946711|ref|ZP_10312353.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392290005|gb|EIV96029.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 422
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LL A+ V LSK+++ GL +HKL +P + + + R +L
Sbjct: 129 YLREIGKVPLLNAAQEVELSKRVEAGL-FAEHKLE------TDPDL-----PVDLCR-DL 175
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ + A+++LV +N+RLV+S+A++Y G + DLVQ
Sbjct: 176 GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 216
>gi|172040574|ref|YP_001800288.1| RNA polymerase sigma factor SigB [Corynebacterium urealyticum DSM
7109]
gi|171851878|emb|CAQ04854.1| RNA polymerase sigma factor B [Corynebacterium urealyticum DSM
7109]
Length = 340
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 21/105 (20%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAAS----LRIS 251
Y+ G+ LLT + V LS++I+ GL EQL S R
Sbjct: 47 YLNGIGKTALLTAEDEVELSQRIEAGLY-----------------AEQLLKSGEPLTRAK 89
Query: 252 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +++ + E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 90 KRDVKILAREGKAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 134
>gi|443313785|ref|ZP_21043395.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442776198|gb|ELR86481.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 440
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSIL----------------------MECSLARE 267
RL LG PS+E+ A + I+ EL+ +L + A+E
Sbjct: 144 RLTAELGHRPSLERWAKNAEINVTELKPLLSAGKRRWAEIAGLTVEQLEQIQTQGVRAKE 203
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 204 HMIQANLRLVVSVAKKYQNRGLELLDLVQ 232
>gi|240850913|ref|YP_002972313.1| RNA polymerase sigma factor RpoD [Bartonella grahamii as4aup]
gi|240268036|gb|ACS51624.1| RNA polymerase sigma factor RpoD [Bartonella grahamii as4aup]
Length = 671
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 241 MEQLAASLRISRPELQSILM-------ECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
++ LA IS E + I+M E ++A++++V SN+RLV+SIA++Y N G D
Sbjct: 402 IQNLAQETAISIGEFRRIVMQVQKGERESTIAKKEMVESNLRLVISIAKKYTNRGLQFLD 461
Query: 294 LVQ 296
L+Q
Sbjct: 462 LIQ 464
>gi|12958492|gb|AAK09321.1|AF320817_2 sigma factor SigA [[Brevibacterium] flavum]
Length = 498
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL + V L+K+I+ GL ++E +L ++R
Sbjct: 190 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEAFAAGDKDAKLTPAVR- 248
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 249 --RDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 292
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRIS----RP------------------ELQSILMECSLARE 267
RL +LG PS+E+ A + I +P EL+ + E A+E
Sbjct: 121 RLASQLGHRPSLERWATAAGIDVSQLKPSMSAGKLRWAELAELTSKELEQVQAEGLQAKE 180
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 181 HMIKANLRLVVSVAKKYQNRGLELLDLIQ 209
>gi|395777861|ref|ZP_10458374.1| RNA polymerase sigma factor rpoD [Bartonella elizabethae Re6043vi]
gi|395418170|gb|EJF84497.1| RNA polymerase sigma factor rpoD [Bartonella elizabethae Re6043vi]
Length = 671
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 241 MEQLAASLRISRPELQSILM-------ECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
++ LA IS E + I+M E ++A++++V SN+RLV+SIA++Y N G D
Sbjct: 402 IQNLAQETAISIGEFRRIVMQVQKGERESTIAKKEMVESNLRLVISIAKKYTNRGLQFLD 461
Query: 294 LVQ 296
L+Q
Sbjct: 462 LIQ 464
>gi|418244274|ref|ZP_12870697.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
gi|354511680|gb|EHE84586.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
Length = 494
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL + V L+K+I+ GL ++E +L ++R
Sbjct: 188 VRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEAFAAGDKDAKLTPAVR--- 244
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L++I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 245 RDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 288
>gi|434399422|ref|YP_007133426.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270519|gb|AFZ36460.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 291
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
PE Q I+ + A++++ +N+RLV+SIA++Y N G + DL+Q
Sbjct: 44 PEEQEIVRKGQWAKQQMTQANLRLVVSIAKKYQNRGLSLLDLIQ 87
>gi|118618666|ref|YP_906998.1| RNA polymerase sigma factor [Mycobacterium ulcerans Agy99]
gi|118570776|gb|ABL05527.1| RNA polymerase sigma factor SigA [Mycobacterium ulcerans Agy99]
Length = 501
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L +R E+L A+
Sbjct: 199 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMAELTDR------GEKLPAA--- 249
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 250 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 295
>gi|427390144|ref|ZP_18884550.1| RNA polymerase sigma factor RpoD [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425733159|gb|EKU95965.1| RNA polymerase sigma factor RpoD [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 585
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V LSK+I+ GL + L + +P ++ R R
Sbjct: 286 VKDYLKQIGRVALLNAAEEVELSKRIEAGL----YAQHLLDEGDFDPQEDR-----RYMR 336
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 337 -ELRIIARDGRSAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 379
>gi|383808262|ref|ZP_09963813.1| RNA polymerase sigma factor RpoD [Rothia aeria F0474]
gi|383448918|gb|EID51864.1| RNA polymerase sigma factor RpoD [Rothia aeria F0474]
Length = 491
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
+++P + +K Y+K + LL + V L+ +I+ GL + HKL + +P ++
Sbjct: 185 VVTPGATADPVKDYLKQIGKVSLLNAQQEVDLAMRIEAGLYAE-HKL--ADNPDMDPKLK 241
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ EL+ ++ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 242 K----------ELRWVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 285
>gi|381401702|ref|ZP_09926595.1| RNA polymerase sigma factor RpoD [Kingella kingae PYKK081]
gi|380833261|gb|EIC13136.1| RNA polymerase sigma factor RpoD [Kingella kingae PYKK081]
Length = 654
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 235 LGCEPSMEQLAASLRISRPELQSI-------LMECSLAREKLVMSNVRLVMSIAQRYDNM 287
L + M L A RIS EL+ I E + A++K++ +N+RLV+SIA++Y N
Sbjct: 375 LEKQTEMAALEAHARISIAELKDISKNMVKSEKETAAAKQKMIQANLRLVISIAKKYTNR 434
Query: 288 GADMADLVQ 296
G DL+Q
Sbjct: 435 GLQFLDLIQ 443
>gi|333374621|ref|ZP_08466461.1| DNA-directed RNA polymerase sigma subunit RpoD [Kingella kingae
ATCC 23330]
gi|332975259|gb|EGK12159.1| DNA-directed RNA polymerase sigma subunit RpoD [Kingella kingae
ATCC 23330]
Length = 654
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 235 LGCEPSMEQLAASLRISRPELQSI-------LMECSLAREKLVMSNVRLVMSIAQRYDNM 287
L + M L A RIS EL+ I E + A++K++ +N+RLV+SIA++Y N
Sbjct: 375 LEKQTEMAALEAHARISIAELKDISKNMVKSEKETAAAKQKMIQANLRLVISIAKKYTNR 434
Query: 288 GADMADLVQ 296
G DL+Q
Sbjct: 435 GLQFLDLIQ 443
>gi|227549126|ref|ZP_03979175.1| RNA polymerase major sigma subunit [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078794|gb|EEI16757.1| RNA polymerase major sigma subunit [Corynebacterium lipophiloflavum
DSM 44291]
Length = 520
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME-QLAASLR 249
+ ++ Y+K + LL V L+K+I+ GL H+L ER E E +L +++
Sbjct: 212 DSVRAYLKQIGKVALLDAELEVSLAKRIEAGLYAQ-HRLDEMERAAAEGDKEAKLTPAVK 270
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+++ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 271 ---RDLRAVARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 314
>gi|443490424|ref|YP_007368571.1| RNA polymerase sigma factor SigA [Mycobacterium liflandii 128FXT]
gi|442582921|gb|AGC62064.1| RNA polymerase sigma factor SigA [Mycobacterium liflandii 128FXT]
Length = 509
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L +R E+L A+
Sbjct: 207 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMAELTDR------GEKLPAA--- 257
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 258 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 303
>gi|441518658|ref|ZP_21000373.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454472|dbj|GAC58334.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 322
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V L+K I+ GL H L +R+G P+ ++ +L
Sbjct: 29 YLNGIGRTALLNAEQEVDLAKAIEVGLYAR-HLLDTTKRMG--PARKR----------DL 75
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 76 NILVREGEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|227495998|ref|ZP_03926309.1| RNA polymerase sigma factor [Actinomyces urogenitalis DSM 15434]
gi|226834486|gb|EEH66869.1| RNA polymerase sigma factor [Actinomyces urogenitalis DSM 15434]
Length = 541
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
G + + +++ + +K Y+K + LL AE V L+K+I+ G+ + L
Sbjct: 227 GDEPAQKVVTAGATADPVKDYLKQIGKVALLNAAEEVELAKRIEAGMYA-------EYLL 279
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
G E + +L A R EL I + A+ L+ +N+RLV+S+A+RY G DL+
Sbjct: 280 GTEGN--ELDAKYR---RELHWISNDGQRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLI 334
Query: 296 Q 296
Q
Sbjct: 335 Q 335
>gi|183982025|ref|YP_001850316.1| RNA polymerase sigma factor [Mycobacterium marinum M]
gi|183175351|gb|ACC40461.1| RNA polymerase sigma factor SigA [Mycobacterium marinum M]
Length = 501
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL L +R E+L A+
Sbjct: 199 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMAELTDR------GEKLPAA--- 249
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 250 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 295
>gi|390439227|ref|ZP_10227637.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
gi|389837354|emb|CCI31761.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
Length = 414
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I+ + A+E+++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|358445404|ref|ZP_09156014.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
gi|356608850|emb|CCE54263.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
Length = 472
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR- 249
+ ++ Y+K + LL + V L+++I+ GL H+L ERL E AA L
Sbjct: 164 DSVRAYLKQIGKVALLNAEQEVSLAERIEAGLYAQ-HRLDDMERLIAEGDA---AAKLSP 219
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 220 AQKRDLRWIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 266
>gi|429730663|ref|ZP_19265309.1| Sigma-70 region 2 [Corynebacterium durum F0235]
gi|429147101|gb|EKX90131.1| Sigma-70 region 2 [Corynebacterium durum F0235]
Length = 329
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 14/121 (11%)
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
GS+Q ++ +P + ++ Y+ G+ LLT + V+L++ I+ GL + H L
Sbjct: 17 GSRQGQTNDNPS--ADLVRVYLNGIGKTALLTAEDEVQLAQTIEVGLYAE-HLL------ 67
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
E S E L R + +L+ + + AR L+ +N+RLV+S+A+RY G + DL+
Sbjct: 68 --ENSEEPLT---RAMKRDLKVLARQGKHARSHLLEANLRLVVSLAKRYTGRGMPLLDLI 122
Query: 296 Q 296
Q
Sbjct: 123 Q 123
>gi|358457491|ref|ZP_09167709.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357079327|gb|EHI88768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 385
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y++ + LLT V L+K+I+ G+ HKL A+ R +L
Sbjct: 91 YLRDIGKVALLTAEGEVDLAKRIEAGV-FAAHKL-----------ATATGATTPRERRDL 138
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + ++A+ +LV +N+RLV+S+A+RY + G D+VQ
Sbjct: 139 EAVEADGNIAKRRLVEANLRLVVSVAKRYVSRGMPFLDVVQ 179
>gi|425445125|ref|ZP_18825161.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
gi|389734954|emb|CCI01463.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
Length = 435
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I+ + A+E+++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 185 ELEEIIALGTHAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 227
>gi|298241844|ref|ZP_06965651.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
gi|297554898|gb|EFH88762.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
Length = 366
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 263 SLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++AR KLV SN+RLV+SIA+RY + G + DL+Q
Sbjct: 128 TIARRKLVESNLRLVISIARRYTSTGVPLIDLIQ 161
>gi|111018672|ref|YP_701644.1| sigma-70 type sigma factor [Rhodococcus jostii RHA1]
gi|110818202|gb|ABG93486.1| sigma factor, sigma 70 type, probable group 2 [Rhodococcus jostii
RHA1]
Length = 520
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y K + LL + L+++I+ GL LKE E + E+L+
Sbjct: 218 DSIRAYSKSIKKRSLLVSGDESELAERIEAGLYA---AYLLKE---AEDAGEKLSDQ--- 268
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L + + A+ + + +N+RLV+SIA+RY G D+ DLVQ
Sbjct: 269 RHRDLHRVCRDGQHAKRRFLEANLRLVVSIARRYQGRGLDLLDLVQ 314
>gi|425734704|ref|ZP_18853021.1| RNA polymerase principal sigma factor [Brevibacterium casei S18]
gi|425480640|gb|EKU47804.1| RNA polymerase principal sigma factor [Brevibacterium casei S18]
Length = 489
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
++S + +K Y+K + LL AE V L+K+I+ G+ E
Sbjct: 183 VVSAGATADPVKDYLKQIGKVALLNAAEEVDLAKRIEAGMY-----------------AE 225
Query: 243 QLAASLRISRPEL----QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L +S P L + I+ + +A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 226 HLLEEGEVSDPRLTMDYKWIIHDGRIAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 283
>gi|302765387|ref|XP_002966114.1| hypothetical protein SELMODRAFT_266972 [Selaginella moellendorffii]
gi|300165534|gb|EFJ32141.1| hypothetical protein SELMODRAFT_266972 [Selaginella moellendorffii]
Length = 249
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 26/28 (92%)
Query: 269 LVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++SN+RLV++IA+RY+NMG ++ DL+Q
Sbjct: 1 MILSNLRLVVAIARRYENMGVEIGDLIQ 28
>gi|302543058|ref|ZP_07295400.1| RNA polymerase principal sigma factor HrdD [Streptomyces
hygroscopicus ATCC 53653]
gi|302460676|gb|EFL23769.1| RNA polymerase principal sigma factor HrdD [Streptomyces
himastatinicus ATCC 53653]
Length = 333
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 175 NGSKQLRSMISPELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE 233
+G+ +R+ E+ L G Y+ + LL A+ V LS+ ++ G+ ++
Sbjct: 17 DGANSVRAT-GGEIADRDLVGMYLDEIARTPLLDAAKEVELSQAVEAGVYA-------QQ 68
Query: 234 RLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
L E A + SR EL++I E + A++ + SN+RLV+++A+RY G + D
Sbjct: 69 ILDGEAEDTGAAGA---SREELEAIAAEGARAKDVFIRSNLRLVVAVARRYPRSGLPLLD 125
Query: 294 LVQ 296
L+Q
Sbjct: 126 LIQ 128
>gi|295836123|ref|ZP_06823056.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
gi|295825874|gb|EDY42152.2| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
Length = 493
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 197 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLQR--------- 244
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 245 -ELEIIAEDGGRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 287
>gi|336325731|ref|YP_004605697.1| RNA polymerase sigma factor A [Corynebacterium resistens DSM 45100]
gi|336101713|gb|AEI09533.1| RNA polymerase sigma factor A [Corynebacterium resistens DSM 45100]
Length = 571
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL + V L+K+I+ GL RL+E + S E+L+ + R
Sbjct: 271 VRAYLKQIGKVALLNAEQEVSLAKRIEAGLYA---AYRLQE---IKESGEKLSP---MHR 321
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 322 RDLREIERDGRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 365
>gi|381397349|ref|ZP_09922761.1| RNA polymerase sigma factor RpoD [Microbacterium laevaniformans
OR221]
gi|380775334|gb|EIC08626.1| RNA polymerase sigma factor RpoD [Microbacterium laevaniformans
OR221]
Length = 443
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL AE V L+ +I+ GL E + ++AS + S+
Sbjct: 145 VKDYLKQIGKVPLLNAAEEVELAMRIEAGLF-------------AEEKLSHMSASEKSSQ 191
Query: 253 P--ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+LQ + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 192 LGLDLQWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQ 237
>gi|289575401|ref|ZP_06455628.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis K85]
gi|289539832|gb|EFD44410.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis K85]
Length = 470
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL E V L+K+I+ GL L ER E+L A+ R
Sbjct: 228 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER------GEKLPAAQRR-- 279
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 280 -DMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|311739612|ref|ZP_07713447.1| RNA polymerase principal sigma factor SigB [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305428|gb|EFQ81496.1| RNA polymerase principal sigma factor SigB [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 337
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL+ + V L++ I+ GL + +KL E+L R + +L
Sbjct: 44 YLNGIGKTALLSAEDEVELAQAIEVGLYAE-YKLNNAEKL------------TRAEKRDL 90
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + E AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 91 KILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 131
>gi|254416308|ref|ZP_05030062.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176990|gb|EDX72000.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 416
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLA-------ASLR---------------ISRPELQSILMECSLARE 267
RL +LG PS+E+ A A+L+ ++ EL+ + E A+E
Sbjct: 120 RLASQLGHRPSLERWATTAGVDVATLKPSLVKGKQRWAELAELTVKELEQVQAEGLQAKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLIQ 208
>gi|300741779|ref|ZP_07071800.1| RNA polymerase sigma (70) factor RpoD [Rothia dentocariosa M567]
gi|300380964|gb|EFJ77526.1| RNA polymerase sigma (70) factor RpoD [Rothia dentocariosa M567]
Length = 468
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
+++P + +K Y+K + LL + V L+ +I+ GL + HKL + +P ++
Sbjct: 162 VVTPGATADPVKDYLKQIGKVSLLNAQQEVDLAMRIEAGLYAE-HKL--ADNPDMDPKLK 218
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ EL+ ++ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 219 K----------ELRWVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 262
>gi|116074180|ref|ZP_01471442.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116069485|gb|EAU75237.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 364
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
ELQ L E AR++++ +N+RLV+++A++Y G ++ DLVQ
Sbjct: 113 ELQKRLREGRRARDRMIQANLRLVVTVAKKYQQRGLELLDLVQ 155
>gi|145295824|ref|YP_001138645.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum R]
gi|417971573|ref|ZP_12612496.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum S9114]
gi|418244265|ref|ZP_12870688.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
14067]
gi|12958494|gb|AAK09322.1|AF320818_1 sigma factor SigB [[Brevibacterium] flavum]
gi|140845744|dbj|BAF54743.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044055|gb|EGV39736.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum S9114]
gi|354511671|gb|EHE84577.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
14067]
Length = 331
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
Q+ ++ Y+ G+ LLT + V L++ I+ GL + H L+ E EP + L+
Sbjct: 31 QDLVRVYLNGIGKTALLTAEDEVELAQTIEVGLYAE-HLLKNSE----EPLTRAMKRDLK 85
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 86 V-------LAKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 125
>gi|19553123|ref|NP_601125.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
13032]
gi|62390759|ref|YP_226161.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
13032]
gi|1149591|emb|CAA89988.1| SigB sigma factor [Corynebacterium glutamicum]
gi|21324689|dbj|BAB99312.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) (SigB)
[Corynebacterium glutamicum ATCC 13032]
gi|41326097|emb|CAF20260.1| RNA POLYMERASE SIGMA FACTOR [Corynebacterium glutamicum ATCC 13032]
gi|385144025|emb|CCH25064.1| RNA polymerase sigma factor [Corynebacterium glutamicum K051]
Length = 331
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
Q+ ++ Y+ G+ LLT + V L++ I+ GL + H L+ E EP + L+
Sbjct: 31 QDLVRVYLNGIGKTALLTAEDEVELAQTIEVGLYAE-HLLKNSE----EPLTRAMKRDLK 85
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ + + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 86 V-------LAKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 125
>gi|311111671|ref|YP_003982893.1| DNA-directed RNA polymerase sigma subunit RpoD [Rothia dentocariosa
ATCC 17931]
gi|310943165|gb|ADP39459.1| DNA-directed RNA polymerase sigma subunit RpoD [Rothia dentocariosa
ATCC 17931]
Length = 468
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 183 MISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSME 242
+++P + +K Y+K + LL + V L+ +I+ GL + HKL + +P ++
Sbjct: 162 VVTPGATADPVKDYLKQIGKVSLLNAQQEVDLAMRIEAGLYAE-HKL--ADNPDMDPKLK 218
Query: 243 QLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ EL+ ++ + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 219 K----------ELRWVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 262
>gi|296393381|ref|YP_003658265.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus
rotundus DSM 44985]
gi|296180528|gb|ADG97434.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus
rotundus DSM 44985]
Length = 441
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL + V L+K+I+ GL + +LR+ G ++L + SR
Sbjct: 141 VRAYLKQIGKVALLNAEQEVELAKRIEAGLYAQE-RLRIAAEEG-----DRLPTT---SR 191
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L ++ + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 192 RDLNWVVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 235
>gi|260578861|ref|ZP_05846767.1| RNA polymerase principal sigma factor SigA [Corynebacterium
jeikeium ATCC 43734]
gi|258603008|gb|EEW16279.1| RNA polymerase principal sigma factor SigA [Corynebacterium
jeikeium ATCC 43734]
Length = 552
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL + V L+K+I+ GL RL+E + S E+L+ + R
Sbjct: 252 VRAYLKQIGKVALLNAEQEVSLAKRIEAGLY---AAYRLQE---IKESGEKLSP---MHR 302
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 303 RDLREIDRDGRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 346
>gi|156740438|ref|YP_001430567.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156231766|gb|ABU56549.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 405
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 14/108 (12%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASL 248
+ + ++ Y++ + LLT E + L+++++ G + ERL Q
Sbjct: 106 VDDPVRVYLREIGRVNLLTAQEEIMLAQQVERGEQAN-------ERL-------QNGDYT 151
Query: 249 RISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ R +L + E ARE+L+ +N+RLV+SIA++Y G + DL+Q
Sbjct: 152 PVERLQLHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQ 199
>gi|68536164|ref|YP_250869.1| RNA polymerase sigma factor [Corynebacterium jeikeium K411]
gi|68263763|emb|CAI37251.1| RNA polymerase sigma factor A [Corynebacterium jeikeium K411]
Length = 544
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+K + LL + V L+K+I+ GL RL+E + S E+L+ + R
Sbjct: 244 VRAYLKQIGKVALLNAEQEVSLAKRIEAGLYA---AYRLQE---IKESGEKLSP---MHR 294
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+L+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 295 RDLREIDRDGRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 338
>gi|425464343|ref|ZP_18843665.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
gi|389833688|emb|CCI21586.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
Length = 414
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I+ + A+E+++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|293375429|ref|ZP_06621710.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325844412|ref|ZP_08168139.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
gi|292645982|gb|EFF64011.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325489086|gb|EGC91470.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
Length = 464
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSL------------------DDHKLRLKERLGC 237
Y+K + ELL+ E ++ +KKI+ G L D L +++
Sbjct: 139 YLKEIGRVELLSSQEEIKFAKKIERGDILEEILKYRRQNEALPQELIDRIDLLIQDAGEA 198
Query: 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
E L ++ E +L E A+++LV SN+RLV+SIA+R+ G DL+Q
Sbjct: 199 HDGNELLVGITELTEEEADRVLHEAEYAKKRLVESNLRLVVSIARRHIGRGMLFLDLIQ 257
>gi|88856913|ref|ZP_01131565.1| RNA polymerase sigma factor [marine actinobacterium PHSC20C1]
gi|88813881|gb|EAR23751.1| RNA polymerase sigma factor [marine actinobacterium PHSC20C1]
Length = 454
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL A+ V L+ +I+ GL +D +K PS ++ ++L
Sbjct: 156 VKDYLKQIGKVALLNAAQEVELAMRIEAGLFAEDKLAEMK------PS--EVRSTLG--- 204
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
ELQ + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 205 RELQWVAKDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQ 248
>gi|440694657|ref|ZP_20877257.1| sigma-70 region 2 [Streptomyces turgidiscabies Car8]
gi|440283312|gb|ELP70605.1| sigma-70 region 2 [Streptomyces turgidiscabies Car8]
Length = 334
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
++++ Y++ + LL+ + V L+K+I+ GL + HKL L P +
Sbjct: 34 DQVRDYLRLIARVRLLSAEQEVDLAKRIEAGLYAE-HKL-----LDDPPEDP-------V 80
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R EL+ + + A+ L+ +N+RLV+S+A+RY G DLVQ
Sbjct: 81 RRGELKILAEDTERAKSHLIEANLRLVVSVAKRYTGRGLLFLDLVQ 126
>gi|386773591|ref|ZP_10095969.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium
paraconglomeratum LC44]
Length = 437
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL A+ V L+++I+ GL + ++L + S L +
Sbjct: 135 VKDYLKQIGKVALLNAAQEVELAERIEAGLYAE-------QKLKGDESYRDKNGRLTKAG 187
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL I + A++ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 188 RELTMIADDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 231
>gi|357392296|ref|YP_004907137.1| putative RNA polymerase major sigma factor [Kitasatospora setae
KM-6054]
gi|311898773|dbj|BAJ31181.1| putative RNA polymerase major sigma factor [Kitasatospora setae
KM-6054]
Length = 541
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 245 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLSQADKLA--PKLKR--------- 292
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 293 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 335
>gi|223998999|ref|XP_002289172.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220974380|gb|EED92709.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 318
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR--I 250
+K Y+K + + +LL E + L+++I+ + ++ + L+ +L P+ ++ A ++ +
Sbjct: 3 MKYYMKTMGNHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEPGM 62
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +++ + A+ L SN+RLV+SIA+RY G +M DL Q
Sbjct: 63 TVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQ 108
>gi|380302336|ref|ZP_09852029.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium squillarum
M-6-3]
Length = 458
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 16/106 (15%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL A+ V L+++I+ GL + KL+ E S+ ++
Sbjct: 161 VKDYLKQIGKVALLNAAQEVELAERIEAGLYAE-QKLKRDE-------------SIVRTK 206
Query: 253 P--ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
P EL I+ + A++ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 207 PGRELAMIVEDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 252
>gi|318066933|emb|CBY89081.1| RNA polymerase sigma70 factor [Halomonas campisalis]
Length = 367
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSL-------AREKLVMSNVRLVMSIAQ 282
R + R+ E M QLA PEL+ I S+ A++++V +N+RLV+SIA+
Sbjct: 266 RAQRRIAFEEDMVQLAV------PELKEINRRLSIGEAKARRAKKEMVEANLRLVISIAK 319
Query: 283 RYDNMGADMADLVQ 296
+Y N G DL+Q
Sbjct: 320 KYTNRGLQFLDLIQ 333
>gi|254386169|ref|ZP_05001481.1| RNA polymerase sigma subunit [Streptomyces sp. Mg1]
gi|194345026|gb|EDX25992.1| RNA polymerase sigma subunit [Streptomyces sp. Mg1]
Length = 325
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 21/134 (15%)
Query: 168 NKSILQQNGSKQLRSMISPELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLS--- 223
+++ ++ S R+ + E+ L G Y+ + LL A+ V LS+ I+ G+
Sbjct: 3 TRAVARRQSSSSARA-VGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYARQ 61
Query: 224 -LDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQ 282
LD ER G P+ R EL+++ E A+E + SN+RLV+++A+
Sbjct: 62 ILDGEA----EREGEAPA-----------REELEALAAEGERAKEVFIRSNLRLVVAVAR 106
Query: 283 RYDNMGADMADLVQ 296
RY G + DL+Q
Sbjct: 107 RYPRSGLPLLDLIQ 120
>gi|166363676|ref|YP_001655949.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166086049|dbj|BAG00757.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 414
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 254 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I+ + A+E+++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|441508334|ref|ZP_20990258.1| RNA polymerase sigma factor SigA [Gordonia aichiensis NBRC 108223]
gi|441447362|dbj|GAC48219.1| RNA polymerase sigma factor SigA [Gordonia aichiensis NBRC 108223]
Length = 485
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + R+ E S E+++ +
Sbjct: 183 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATERLRRIME------SGEKISTA--- 233
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 234 QKRDLNWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 279
>gi|357402165|ref|YP_004914090.1| RNA polymerase principal sigma factor hrdB [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|337768574|emb|CCB77287.1| RNA polymerase principal sigma factor hrdB [Streptomyces cattleya
NRRL 8057 = DSM 46488]
Length = 517
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 221 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLSSADKLA--PKLQR--------- 268
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 269 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 311
>gi|237785656|ref|YP_002906361.1| RNA polymerase sigma factor SigB [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758568|gb|ACR17818.1| RNA polymerase sigma factor B [Corynebacterium kroppenstedtii DSM
44385]
Length = 326
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPEL 255
Y+ G+ LL + V LS++I+ GL H L S EQ S + +L
Sbjct: 34 YLNGIGRTALLNAEDEVELSQRIEAGLYAQ-HLL---------ESDEQFTPS---KKRDL 80
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+++ + AR L+ +N+RLV+S+A+RY G + DL+Q
Sbjct: 81 KAVAKDGRAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 121
>gi|418472299|ref|ZP_13042049.1| RNA polymerase sigma factor [Streptomyces coelicoflavus ZG0656]
gi|371547089|gb|EHN75499.1| RNA polymerase sigma factor [Streptomyces coelicoflavus ZG0656]
Length = 554
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 258 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 305
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 306 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 348
>gi|386852074|ref|YP_006270087.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
gi|359839578|gb|AEV88019.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
Length = 329
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
++ Y+ G+ LLT E V LSK+I+ GL + E+L A+
Sbjct: 36 VRAYLNGIGRTRLLTAVEEVTLSKRIEAGLYAE----------------EKLPAADAALA 79
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
L ++ E A+ L+ +N+RLV+SIA+RY G DL+Q
Sbjct: 80 ELLDIVIAEGRAAKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 123
>gi|312195623|ref|YP_004015684.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311226959|gb|ADP79814.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 418
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 13/107 (12%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLR 249
+ ++ Y+ + LLT E V L+K+++ GL E+L E L LR
Sbjct: 119 HDSVRQYLSQIGRVRLLTAEEEVDLAKRVEAGLFA-------AEKLAAENG---LVGDLR 168
Query: 250 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + +A+ +LV +N+RLV+SIA+RY G DL+Q
Sbjct: 169 ---RELVWVERDGEIAKSRLVEANLRLVVSIARRYVGRGMLFLDLIQ 212
>gi|452823970|gb|EME30976.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 547
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 53/90 (58%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
L+ Y++ + + + H E ++L++ IK GL D L +RL EP++ + A +L++S
Sbjct: 228 LREYLENIQQSQAVRHNEELKLTENIKRGLLADTMFKELSQRLNREPTVYEWADALQVSA 287
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQ 282
+L+ I+ ++++ LV ++ L+ IA+
Sbjct: 288 EKLEEIMKLGRISKQALVTLHMGLIRMIAR 317
>gi|434400128|ref|YP_007134132.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
gi|428271225|gb|AFZ37166.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
Length = 416
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 290
LKERL + A + S EL+ I + A+E ++ +N+RLV+S+A++Y N G +
Sbjct: 145 LKERLSV--GKHRWAEVVNCSVKELERIQRDGIRAKEHMIKANLRLVVSVAKKYQNRGLE 202
Query: 291 MADLVQ 296
+ DL+Q
Sbjct: 203 LLDLIQ 208
>gi|395776036|ref|ZP_10456551.1| RNA polymerase sigma factor [Streptomyces acidiscabies 84-104]
Length = 328
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y++ + LLT + V L+K+I+ GL ERL L A
Sbjct: 35 VKDYLRLIARVRLLTAEQEVDLAKRIEAGL--------YAERL--------LTAETAYDT 78
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + A+ LV +N+RLV+S+A+RY N G DL+Q
Sbjct: 79 RELALLAEDGRRAKGHLVEANLRLVVSVAKRYINRGLAFLDLIQ 122
>gi|333371313|ref|ZP_08463268.1| DNA-directed RNA polymerase sigma subunit SigG [Desmospora sp.
8437]
gi|332976340|gb|EGK13196.1| DNA-directed RNA polymerase sigma subunit SigG [Desmospora sp.
8437]
Length = 259
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQV 297
AREKLV N+RLV+S+ QR++N G ++ DL QV
Sbjct: 39 AREKLVNGNLRLVLSVIQRFNNRGENVDDLFQV 71
>gi|326773494|ref|ZP_08232777.1| RNA polymerase sigma (70) factor RpoD, partial [Actinomyces
viscosus C505]
gi|326636724|gb|EGE37627.1| RNA polymerase sigma (70) factor RpoD [Actinomyces viscosus C505]
Length = 164
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL + RL E + L A LR
Sbjct: 24 VKDYLKQIGKVALLNAEQEVELAKRIEAGLYAE-------HRLAEEGN--DLPAKLR--- 71
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 72 RELHWVAQDGQRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 115
>gi|374989227|ref|YP_004964722.1| RNA polymerase principal sigma factor hrdD [Streptomyces
bingchenggensis BCW-1]
gi|297159879|gb|ADI09591.1| RNA polymerase principal sigma factor hrdD [Streptomyces
bingchenggensis BCW-1]
Length = 333
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 175 NGSKQLRSMISPELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE 233
+G+ +R+ E+ L G Y+ + LL A+ V LS+ I+ G+ ++
Sbjct: 17 DGANSVRAT-GGEIADRDLVGMYLDEIARTPLLDAAKEVELSQAIEAGVYA-------QQ 68
Query: 234 RLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293
L E A + SR EL++I E + A++ + SN+RLV+++A+RY G + D
Sbjct: 69 ILDGEIEDAPAAGA---SRGELEAIAAEGARAKDVFIRSNLRLVVAVARRYPRSGLPLLD 125
Query: 294 LVQ 296
L+Q
Sbjct: 126 LIQ 128
>gi|170782897|ref|YP_001711231.1| RNA polymerase principal sigma factor HrdD [Clavibacter
michiganensis subsp. sepedonicus]
gi|169157467|emb|CAQ02657.1| RNA polymerase principal sigma factor HrdD [Clavibacter
michiganensis subsp. sepedonicus]
Length = 347
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 182 SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSM 241
S+++P + +K Y++ + LLT V ++++I+ G+ + L R P+
Sbjct: 40 SLVTPGASTDAVKDYLRQIGRVPLLTAELEVSVARRIEVGVL---SQEVLDTRTDLTPA- 95
Query: 242 EQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R E Q++ + A++ LV +N+RLV+SIA+RY G DL+Q
Sbjct: 96 ---------ERREYQTLAQDGMRAKQHLVNANLRLVVSIAKRYTGRGLPFLDLIQ 141
>gi|427727607|ref|YP_007073844.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427363526|gb|AFY46247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 416
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSL----------------------ARE 267
RL LG PS+E+ A + + +L+ IL E A+E
Sbjct: 120 RLASELGHRPSLERWANTAGVQVSDLKPILSEGKRRWAEIAKMTVEELEQIQSNGLQAKE 179
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 180 HMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|402827912|ref|ZP_10876845.1| RNA polymerase sigma factor RpoD, partial [Sphingomonas sp. LH128]
gi|402258553|gb|EJU08983.1| RNA polymerase sigma factor RpoD, partial [Sphingomonas sp. LH128]
Length = 201
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 7/61 (11%)
Query: 243 QLAASLRISRPELQSIL-------MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
++AA++ ++ PE + I+ E +A++++V +N+RLV+SIA++Y N G DL+
Sbjct: 19 EIAATIGMALPEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYLNRGLQFLDLI 78
Query: 296 Q 296
Q
Sbjct: 79 Q 79
>gi|384100762|ref|ZP_10001819.1| RNA polymerase sigma factor [Rhodococcus imtechensis RKJ300]
gi|383841668|gb|EID80945.1| RNA polymerase sigma factor [Rhodococcus imtechensis RKJ300]
Length = 457
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + ++ + L S E+L A+
Sbjct: 155 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGL----YATQIMQELS--DSGEKLPAA--- 205
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 206 QRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 251
>gi|148243603|ref|YP_001228760.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851913|emb|CAK29407.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 323
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 256 QSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
Q + M C AR++++ +N+RLV+S+A++Y N G ++ DLVQ
Sbjct: 81 QQVRMGCR-ARDRMMAANLRLVVSVAKKYQNQGLELLDLVQ 120
>gi|226366217|ref|YP_002784000.1| RNA polymerase sigma factor [Rhodococcus opacus B4]
gi|226244707|dbj|BAH55055.1| RNA polymerase sigma factor SigA [Rhodococcus opacus B4]
gi|254553058|dbj|BAH85841.1| RNA polymerase sigma A factor [Rhodococcus opacus]
Length = 457
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + ++ + L S E+L A+
Sbjct: 155 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGL----YATQIMQELS--DSGEKLPAA--- 205
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 206 QRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 251
>gi|427418816|ref|ZP_18908999.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
gi|425761529|gb|EKV02382.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
Length = 434
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 22/89 (24%)
Query: 230 RLKERLGCEPSMEQLAASLRISRPELQSILM----------------------ECSLARE 267
R+ +LG PS+E+L+ I EL+ L E + A+E
Sbjct: 138 RMAAQLGHRPSLERLSKECGIESIELKPTLQAGKRQWAELVGMSVQELDEACSEGTRAKE 197
Query: 268 KLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
++ +N+RLV+S+A++Y N G ++ DL+Q
Sbjct: 198 HMIKANLRLVVSVAKKYQNRGLELLDLIQ 226
>gi|432341278|ref|ZP_19590642.1| RNA polymerase sigma factor [Rhodococcus wratislaviensis IFP 2016]
gi|430773693|gb|ELB89357.1| RNA polymerase sigma factor [Rhodococcus wratislaviensis IFP 2016]
Length = 457
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + ++ + L S E+L A+
Sbjct: 155 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGL----YATQIMQELS--DSGEKLPAA--- 205
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 206 QRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 251
>gi|408681217|ref|YP_006881044.1| RNA polymerase sigma factor RpoD [Streptomyces venezuelae ATCC
10712]
gi|328885546|emb|CCA58785.1| RNA polymerase sigma factor RpoD [Streptomyces venezuelae ATCC
10712]
Length = 567
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 271 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLKR--------- 318
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 319 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 361
>gi|291448259|ref|ZP_06587649.1| LOW QUALITY PROTEIN: RNA polymerase sigma factor RpoD [Streptomyces
roseosporus NRRL 15998]
gi|291351206|gb|EFE78110.1| LOW QUALITY PROTEIN: RNA polymerase sigma factor RpoD [Streptomyces
roseosporus NRRL 15998]
Length = 360
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 219 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLA--PKLKR--------- 266
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 267 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 309
>gi|111023781|ref|YP_706753.1| RNA polymerase sigma factor [Rhodococcus jostii RHA1]
gi|397737315|ref|ZP_10503987.1| RNA polymerase principal sigma factor hrdB [Rhodococcus sp. JVH1]
gi|110823311|gb|ABG98595.1| sigma factor, sigma 70 type, probable group 1 (principle sigma
factor) [Rhodococcus jostii RHA1]
gi|396926754|gb|EJI93991.1| RNA polymerase principal sigma factor hrdB [Rhodococcus sp. JVH1]
Length = 457
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + ++ + L S E+L A+
Sbjct: 155 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGL----YATQIMQELS--DSGEKLPAA--- 205
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
R ++ I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 206 QRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 251
>gi|67925817|ref|ZP_00519113.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4 [Crocosphaera
watsonii WH 8501]
gi|67852341|gb|EAM47804.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4 [Crocosphaera
watsonii WH 8501]
Length = 386
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
L + IS ELQ IL A+EK++ +N+RLV++++++Y G + DLV
Sbjct: 2 LGKEIGISVRELQLILKRGKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLV 53
>gi|384082652|ref|ZP_09993827.1| transcription initiation factor sigma 70 [gamma proteobacterium
HIMB30]
Length = 625
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 237 CEPSMEQLAASLRISRPELQSILMECSL-------AREKLVMSNVRLVMSIAQRYDNMGA 289
C+ ++ +A + ++ PEL+ + S+ A++ +V +N+RLV+SIA++Y N G
Sbjct: 352 CQARLQSIAEGVGVTIPELREVNRRLSMGEAKARRAKKDMVEANLRLVISIAKKYTNRGL 411
Query: 290 DMADLVQ 296
DL+Q
Sbjct: 412 QFLDLIQ 418
>gi|365828279|ref|ZP_09370103.1| hypothetical protein HMPREF0975_01886 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365263774|gb|EHM93597.1| hypothetical protein HMPREF0975_01886 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 550
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
G + + +++ + +K Y+K + LL + V L+K+I+ GL + RL
Sbjct: 236 GDEPAQRVVTAGATADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLYAE-------HRL 288
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
E + L A LR EL + + A+ L+ +N+RLV+S+A+RY G DL+
Sbjct: 289 AEEGN--DLPAKLR---RELHWVAQDGQRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLI 343
Query: 296 Q 296
Q
Sbjct: 344 Q 344
>gi|329946883|ref|ZP_08294295.1| RNA polymerase sigma factor RpoD [Actinomyces sp. oral taxon 170
str. F0386]
gi|328526694|gb|EGF53707.1| RNA polymerase sigma factor RpoD [Actinomyces sp. oral taxon 170
str. F0386]
Length = 543
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
G + + +++ + +K Y+K + LL + V L+K+I+ GL + RL
Sbjct: 229 GDEPAQRVVTAGATADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLYAE-------HRL 281
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
E + L A LR EL + + A+ L+ +N+RLV+S+A+RY G DL+
Sbjct: 282 AEEGN--DLPAKLR---RELHWVAQDGQRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLI 336
Query: 296 Q 296
Q
Sbjct: 337 Q 337
>gi|325280730|ref|YP_004253272.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Odoribacter
splanchnicus DSM 20712]
gi|324312539|gb|ADY33092.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Odoribacter
splanchnicus DSM 20712]
Length = 289
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
AREKLV+SN+R V+S+A++Y N G + DL+
Sbjct: 50 AREKLVLSNLRFVVSVAKQYQNHGLTLGDLI 80
>gi|453382628|dbj|GAC82923.1| RNA polymerase sigma factor SigA [Gordonia paraffinivorans NBRC
108238]
Length = 527
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI 250
+ ++ Y+K + LL E V L+K+I+ GL + R+ E S E+++ +
Sbjct: 225 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATERLRRIME------SGEKISTA--- 275
Query: 251 SRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
+ +L I + + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 276 QKRDLNWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 321
>gi|402827771|ref|ZP_10876766.1| RNA polymerase sigma factor RpoD, partial [Sphingomonas sp. LH128]
gi|402258694|gb|EJU09062.1| RNA polymerase sigma factor RpoD, partial [Sphingomonas sp. LH128]
Length = 128
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 233 ERLGCEPSMEQLAASLRISRPELQSIL-------MECSLAREKLVMSNVRLVMSIAQRYD 285
ER+ E S +AA+ ++ PE + I+ E +A++++V +N+RLV+SIA++Y
Sbjct: 55 ERIRLEVS--DIAAATGMALPEFRRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYT 112
Query: 286 NMGADMADLVQ 296
N G DL+Q
Sbjct: 113 NRGLQFLDLIQ 123
>gi|374850797|dbj|BAL53777.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
gi|374856619|dbj|BAL59472.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
Length = 277
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 26/32 (81%)
Query: 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
ARE+L+ +N+RLV+SIA RY ++G + DL+Q
Sbjct: 47 ARERLITANLRLVVSIAARYRDLGVPLLDLIQ 78
>gi|325068636|ref|ZP_08127309.1| RNA polymerase, sigma 70 subunit, RpoD [Actinomyces oris K20]
Length = 542
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 176 GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235
G + + +++ + +K Y+K + LL + V L+K+I+ GL + RL
Sbjct: 228 GDEPAQRVVTAGATADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLYAE-------HRL 280
Query: 236 GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295
E + L A LR EL + + A+ L+ +N+RLV+S+A+RY G DL+
Sbjct: 281 AEEGN--DLPAKLR---RELHWVAQDGQRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLI 335
Query: 296 Q 296
Q
Sbjct: 336 Q 336
>gi|302522320|ref|ZP_07274662.1| RNA polymerase sigma factor RpoS [Streptomyces sp. SPB78]
gi|302431215|gb|EFL03031.1| RNA polymerase sigma factor RpoS [Streptomyces sp. SPB78]
Length = 514
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISR 252
+K Y+K + LL + V L+K+I+ GL +D KL ++L P +++
Sbjct: 218 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLA--PKLQR--------- 265
Query: 253 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296
EL+ I + A+ L+ +N+RLV+S+A+RY G DL+Q
Sbjct: 266 -ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 308
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.126 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,040,460,292
Number of Sequences: 23463169
Number of extensions: 148463012
Number of successful extensions: 422320
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1792
Number of HSP's successfully gapped in prelim test: 1335
Number of HSP's that attempted gapping in prelim test: 419144
Number of HSP's gapped (non-prelim): 3850
length of query: 301
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 160
effective length of database: 9,050,888,538
effective search space: 1448142166080
effective search space used: 1448142166080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)