BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022170
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 187/293 (63%), Gaps = 13/293 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 33 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 92
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 93 I-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMD 139
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +
Sbjct: 140 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLL 199
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GG
Sbjct: 200 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 259
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 293
F + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 260 FGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQF 312
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 187/293 (63%), Gaps = 13/293 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 11 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 70
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 71 I-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMD 117
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +
Sbjct: 118 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLL 177
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GG
Sbjct: 178 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 237
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 293
F + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 238 FGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQF 290
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 159/290 (54%), Gaps = 15/290 (5%)
Query: 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQV 61
G A+NL+KAGY + V D+ + + G + + + +DVVI+ LP+S H V
Sbjct: 15 GAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISXLPASQH-V 73
Query: 62 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+Y +GLL + P L+++ STI P ++R I AA L LD
Sbjct: 74 EGLYLDDDGLLA---HIAPGTLVLECSTIAPTSARKIHAAARERGL----------AXLD 120
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGG A AGTLTF VGG +A + A+PLF + G+N + G G G AK+CNN +
Sbjct: 121 APVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLL 180
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AV +G +EA LG + G+ A L +I SS W+ + YNP PGV E PASR+Y GG
Sbjct: 181 AVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYSGG 240
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 290
F ++L AKDL LA +A+ P S A +Y L + G+ +DFS V
Sbjct: 241 FXAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 290
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 159/290 (54%), Gaps = 15/290 (5%)
Query: 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQV 61
G A+NL+KAGY + V D+ + + G + + + +DVVI+ LP+S H V
Sbjct: 14 GAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISXLPASQH-V 72
Query: 62 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+Y +GLL + P L+++ STI P ++R I AA L LD
Sbjct: 73 EGLYLDDDGLLA---HIAPGTLVLECSTIAPTSARKIHAAARERGL----------AXLD 119
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGG A AGTLTF VGG +A + A+PLF + G+N + G G G AK+CNN +
Sbjct: 120 APVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLL 179
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AV +G +EA LG + G+ A L +I SS W+ + YNP PGV E PASR+Y GG
Sbjct: 180 AVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYSGG 239
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 290
F ++L AKDL LA +A+ P S A +Y L + G+ +DFS V
Sbjct: 240 FXAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 289
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 150/295 (50%), Gaps = 21/295 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NL+K G + D+ + G E +VA ASD++ T LP++
Sbjct: 15 MGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGI- 73
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV-ML 119
V V NGP G+L + +++D S++ P ++ LK K + E + +
Sbjct: 74 VETVMNGPGGVLSACKA--GTVIVDMSSVSPSST-----------LKMAKVAAEKGIDYV 120
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
DAPVSGG AEAGTLT MVG SE ++ +P+ +GK+ + G G G A KI NNL
Sbjct: 121 DAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLL 180
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
+ +M ++EAL LG G+ T+ +I+ SS R ++ ++ ME S ++ G
Sbjct: 181 LGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK------MEKFIMSGDFAG 234
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
GFA L KDL LAL + KE V P+T+ A I+ G +D S V + +
Sbjct: 235 GFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVW 289
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 140/296 (47%), Gaps = 24/296 (8%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML--PSSS 58
MG MA NL+KAG + + + + + + +G TP EV E+ V ML P+++
Sbjct: 12 MGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTFAMLADPAAA 71
Query: 59 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 118
+V G +G+L+G R +D ST+DP TS+ I AV + K +
Sbjct: 72 EEVC---FGKHGVLEGIGEGRG--YVDMSTVDPATSQRIGVAV---VAKGGR-------F 116
Query: 119 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 178
L+APVSG AE GTL + G + Y A P F MGK I+ G G GA K+ N+
Sbjct: 117 LEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNM 176
Query: 179 TMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYG 238
M M E L LG+ G++ + ++ + + NP+ + G+ RN+
Sbjct: 177 VMGGMMACFCEGLALGEKAGLATDAILDVIGAGA-------MANPMFALKGGLIRDRNFA 229
Query: 239 GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
F K M KDL LA+A VG ++ A +++ G +DFS +F+ Y
Sbjct: 230 PAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTY 285
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 139/294 (47%), Gaps = 22/294 (7%)
Query: 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQV 61
G + NL+KAGY + V D N + G T T +AE DV+IT LP+S H V
Sbjct: 17 GKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITXLPNSPH-V 75
Query: 62 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+V G NG+++G +P +LID S+I P SR IS A+ K E LD
Sbjct: 76 KEVALGENGIIEGA---KPGTVLIDXSSIAPLASREISDAL-------KAKGVE---XLD 122
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGG A GTL+ VGG + + L + + ++ G G G K+ N + +
Sbjct: 123 APVSGGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIV 182
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+++ SEALTL G++ + + + A D+ P RN+ G
Sbjct: 183 ALNIAAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------XVXDRNFKPG 235
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
F L KDL AL ++ VG PLT+ + L +GH + D S + +Y
Sbjct: 236 FRIDLHIKDLANALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSALACYY 289
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 140/289 (48%), Gaps = 25/289 (8%)
Query: 6 ASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 65
A NL +AG+++ V + ++ S +G ET +V E +D++ +P + QV DV
Sbjct: 19 AINLARAGHQLHVTTIGPVADELLS-LGAVNVETARQVTEFADIIFIXVPDTP-QVEDVL 76
Query: 66 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 125
G +G + S++ + ++D S+I P ++ + V+ E + LDAPVSG
Sbjct: 77 FGEHGCAK--TSLQGKTIVDXSSISPIETKRFAQRVN-----EXGADY-----LDAPVSG 124
Query: 126 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSML 185
G + A GTL+ VGG + + KPLF +GKN GG G+G K+ N + +A+++
Sbjct: 125 GEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIE 184
Query: 186 GVSEALTLGQSLGISASTLTKILNS--SSARCWSSDSYNPVPGVMEGVPASRNYGGGFAS 243
VSEAL G + + L +S+R + +R + GF
Sbjct: 185 AVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXI---------NRTFEPGFKI 235
Query: 244 KLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292
L KDLNLAL SAK + ++ P T+ Q+++ NG D S Q
Sbjct: 236 ALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAXVQ 284
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 138/294 (46%), Gaps = 24/294 (8%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML--PSSS 58
MG MA+NL++AG+ + V + N +G +P EV A D+ I ML P+++
Sbjct: 12 MGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAA 71
Query: 59 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 118
+V G NG+L+G R ID ST+D +TS I AAV+
Sbjct: 72 REVC---FGANGVLEGIGGGRG--YIDMSTVDDETSTAIGAAVTA----------RGGRF 116
Query: 119 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 178
L+APVSG AE GTL + G + + A P F ++GK ++ G G GA K+ N+
Sbjct: 117 LEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNM 176
Query: 179 TMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYG 238
M M + E + LG++ G+ L ++L++ + NP+ + S +
Sbjct: 177 IMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGA-------MANPMFKGKGQMLLSGEFP 229
Query: 239 GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292
F K M KDL LA+ +G + A + + + GH +DF+ VF+
Sbjct: 230 TSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFR 283
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG+ MA +L + + + ++ + G ++ P E + V+ T LP++ +
Sbjct: 12 MGYPMAGHLARRFPTLVWNRTFEKALRHQEEFG--SEAVPLERVAEARVIFTCLPTT-RE 68
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V +V L+ G +D+++ +P+ SR ++ L+EK ++ LD
Sbjct: 69 VYEVAEALYPYLREGT-----YWVDATSGEPEASRRLAER-----LREKGVTY-----LD 113
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGG AEAGTLT M+GG E+A + +P FL+ K ++ G G G A K NN +
Sbjct: 114 APVSGGTSGAEAGTLTVMLGGPEEAVERVRP-FLAYAKKVVHVGPVGAGHAVKAINNALL 172
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AV++ E L G+SA +++N+SS R ++++ P + P +
Sbjct: 173 AVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKT------ 226
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 274
FA L+ KDL +A+ PL A+++Y
Sbjct: 227 FALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVY 260
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 124/295 (42%), Gaps = 22/295 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG + SNL+K G+ + V + +F G TP EV D+ + S
Sbjct: 41 MGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACV-SDPKA 99
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
D+ GP+G+LQG +RP + +D ST+D T ++ + + L
Sbjct: 100 AKDLVLGPSGVLQG---IRPGKCYVDMSTVDADTVTELAQVIVS----------RGGRFL 146
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
+APVSG + G L + G Y+ F +MGK + + G GN A + N+
Sbjct: 147 EAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMV 206
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
M ++E LTL Q G S TL ILN D +++G N+
Sbjct: 207 QGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLD--QKCQNILQG-----NFKP 259
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
F K + KDL LA+A V P+ + A ++Y + D S V++ Y
Sbjct: 260 DFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAY 314
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 23/236 (9%)
Query: 39 TPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNIS 98
P E + V+ T LP++ +V +V L+ G +D+++ +P+ SR ++
Sbjct: 48 VPLERVAEARVIFTCLPTT-REVYEVAEALYPYLREGT-----YWVDATSGEPEASRRLA 101
Query: 99 AAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 158
L+EK ++ LDAPVSGG AEAGTLT +GG E+A + +P FL+ K
Sbjct: 102 ER-----LREKGVTY-----LDAPVSGGTSGAEAGTLTVXLGGPEEAVERVRP-FLAYAK 150
Query: 159 NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS 218
++ G G G A K NN +AV++ E L G+SA +++N+SS R ++
Sbjct: 151 KVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNAT 210
Query: 219 DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 274
++ P + P + FA L+ KDL +A PL A+++Y
Sbjct: 211 ENLIPQRVLTRAFPKT------FALGLLVKDLGIAXGVLDGEKAPSPLLRLAREVY 260
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 129/295 (43%), Gaps = 26/295 (8%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG M+ NL+K G+K+ V + + + G E+P EV + I ML S
Sbjct: 32 MGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAML-SDPCA 90
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
L V G+L+ + ID ST+D +TS I+ A++ + ++
Sbjct: 91 ALSVVFDKGGVLE--QICEGKGYIDMSTVDAETSLKINEAITG----------KGGRFVE 138
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
PVSG AE G L + G + ++ + P F +GK + Y G GNGA K+ N+ M
Sbjct: 139 GPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIM 198
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRN---Y 237
M SE L L G+S+ TL IL+ + NP + +G S N Y
Sbjct: 199 GSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMT-------NP---MFKGKGPSMNKSSY 248
Query: 238 GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292
F K KD+ LALA E V P+ + A + + K G DFS V +
Sbjct: 249 PPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIE 303
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 30/294 (10%)
Query: 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQV 61
G A L +AGY + V + + +G E A +D+V++ L + + V
Sbjct: 43 GLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSXLENGA-VV 101
Query: 62 LDVYNGPNGLLQG-GNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
DV QG + +P L +D ++I P+ +R+ +A + + L
Sbjct: 102 QDVL-----FAQGVAAAXKPGSLFLDXASITPREARDHAARLGALGIAH----------L 146
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
D PVSGG + AE GTL GG ++ + PL G+ T + G G+G K+ N
Sbjct: 147 DTPVSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGRAT-HVGPHGSGQLTKLANQXI 205
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSA--RCWSSDSYNPVPGVMEGVPASRNY 237
+ +++ V+EAL G + + + + A R V R++
Sbjct: 206 VGITIGAVAEALLFATKGGADXAKVKEAITGGFADSRVLQLHGQRXV---------ERDF 256
Query: 238 GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 291
+ KD ALA+A+E+G D P+T + +YA+ E+G D S +F
Sbjct: 257 APRARLSIQLKDXRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLF 310
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 117/273 (42%), Gaps = 18/273 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA+ + + + V+D+ M ++ G ++ +VA A + IT+L + Q
Sbjct: 26 MGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHITVLDDA--Q 83
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V +V G + G + I S T + +R++ A + ++D
Sbjct: 84 VREVVGELAGHAKPGTVIAIHSTI-SDTTAVELARDLKA--------------RDIHIVD 128
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGG AA G L MVG + Y+ KP F I+ G G G K+ N+
Sbjct: 129 APVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLT 188
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
S EA+ L ++ G+ L +++ + A + + + P + Y
Sbjct: 189 FTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPF 248
Query: 241 FASK-LMAKDLNLALASAKEVGVDCPLTSQAQD 272
++ L KDL+LALA + V VD PL A +
Sbjct: 249 LHTRGLGEKDLSLALALGEAVSVDLPLARLAYE 281
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 23/249 (9%)
Query: 49 VVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE 108
V++ + + QVL +G L + G++V SSTI ++ I+AA++ L
Sbjct: 69 VILVVNAAQVRQVLFGEDGVAHLXKPGSAVXV-----SSTISSADAQEIAAALTALNLN- 122
Query: 109 KKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA-G 167
LDAPVSGG + A G T GSE A+ KP+ ++ N G
Sbjct: 123 ---------XLDAPVSGGAVKAAQGEXTVXASGSEAAFTRLKPVLDAVASNVYRISDTPG 173
Query: 168 NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGV 227
G+ KI + L V + +EA L GI ++ ++ W + N V
Sbjct: 174 AGSTVKIIHQLLAGVHIAAAAEAXALAARAGIPLDVXYDVVTHAAGNSWXFE--NRXQHV 231
Query: 228 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDF 287
++G +Y A + KDL L +AK + PL S A + + G+ +D
Sbjct: 232 VDG-----DYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNXFTSASNAGYGKEDD 286
Query: 288 SCVFQHYYG 296
S V + + G
Sbjct: 287 SAVIKIFSG 295
>pdb|2YYY|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
pdb|2YYY|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
Length = 343
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 10 MKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS-SHQVLDVYNGP 68
++ GYK+ V + +K+F D G+P + T ++ E +D+V+ P Q L+ P
Sbjct: 45 VEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDADIVVDGAPKKIGKQNLENIYKP 104
Query: 69 N---GLLQGGNSVR 79
+ +LQGG +
Sbjct: 105 HKVKAILQGGEKAK 118
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 123 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAK 173
+ GV E G L + M GG ++A++ +P+F ++ T Y G G G K
Sbjct: 124 IGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYVK 183
Query: 174 ICNNLTMAVSMLGVSEA-LTLGQSLGISASTLTKIL 208
+ +N M ++EA L LG+ A+ L ++
Sbjct: 184 MVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 219
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 123 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAK 173
+ GV E G L + M GG ++A++ +P+F ++ T Y G G G K
Sbjct: 125 IGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYVK 184
Query: 174 ICNNLTMAVSMLGVSEA-LTLGQSLGISASTLTKIL 208
+ +N M ++EA L LG+ A+ L ++
Sbjct: 185 MVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 220
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
F+ K M K ++L L AKE+G+D P + ++I + + +SK VF +Y
Sbjct: 320 FSDKRMKKAISL-LVQAKEIGLDHPKMDKLKEIIREQLQRKQNSK--IIVFTNY 370
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 29/184 (15%)
Query: 123 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSM-------GKNTI-YCGGAGNGAA 171
+ GV E G L + M GG ++AY P+F + GK + Y G G G
Sbjct: 123 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 182
Query: 172 AKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARCWSS---DSYNPVPGV 227
K+ +N M ++E+ L + LG+S + + I W+ DSY +
Sbjct: 183 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEE-----WNEGELDSY-LIEIT 236
Query: 228 MEGVPASRNYGGGF-ASKLMAKDLNLALA-----SAKEVGVDCPLTSQAQDIYAKLCENG 281
E + + G G+ K++ K N SA ++GV PL +++ ++A+
Sbjct: 237 KEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES--VFARYISTY 294
Query: 282 HDSK 285
D +
Sbjct: 295 KDER 298
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 29/184 (15%)
Query: 123 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSM-------GKNTI-YCGGAGNGAA 171
+ GV E G L + M GG ++AY P+F + GK + Y G G G
Sbjct: 125 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 184
Query: 172 AKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARCWSS---DSYNPVPGV 227
K+ +N M ++E+ L + LG+S + + I W+ DSY +
Sbjct: 185 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEE-----WNEGELDSY-LIEIT 238
Query: 228 MEGVPASRNYGGGF-ASKLMAKDLNLALA-----SAKEVGVDCPLTSQAQDIYAKLCENG 281
E + + G G+ K++ K N SA ++GV PL +++ ++A+
Sbjct: 239 KEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES--VFARYISTY 296
Query: 282 HDSK 285
D +
Sbjct: 297 KDER 300
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 29/184 (15%)
Query: 123 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSM-------GKNTI-YCGGAGNGAA 171
+ GV E G L + M GG ++AY P+F + GK + Y G G G
Sbjct: 124 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 183
Query: 172 AKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARCWSS---DSYNPVPGV 227
K+ +N M ++E+ L + LG+S + + I W+ DSY +
Sbjct: 184 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEE-----WNEGELDSY-LIEIT 237
Query: 228 MEGVPASRNYGGGF-ASKLMAKDLNLALA-----SAKEVGVDCPLTSQAQDIYAKLCENG 281
E + + G G+ K++ K N SA ++GV PL +++ ++A+
Sbjct: 238 KEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES--VFARYISTY 295
Query: 282 HDSK 285
D +
Sbjct: 296 KDER 299
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 21 VNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL 62
VN V+K+F+DM V TP E+ + V+ L Q++
Sbjct: 7 VNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQII 48
>pdb|2JNS|A Chain A, Solution Structure Of The Bromodomain-Containing Protein 4
Et Domain
Length = 90
Score = 27.7 bits (60), Expect = 9.0, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 76 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 110
NS ++ ID T+ P T R + V++C+ K++K
Sbjct: 54 NSNPDEIEIDFETLKPSTLRELERYVTSCLRKKRK 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,945,359
Number of Sequences: 62578
Number of extensions: 349755
Number of successful extensions: 669
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 32
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)