Query 022170
Match_columns 301
No_of_seqs 228 out of 1728
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 2.4E-60 5.2E-65 408.6 30.6 275 1-295 11-286 (286)
2 KOG0409 Predicted dehydrogenas 100.0 1.1E-57 2.3E-62 384.3 30.5 281 1-300 46-326 (327)
3 PRK15059 tartronate semialdehy 100.0 1.6E-51 3.5E-56 362.4 32.0 276 1-297 11-286 (292)
4 TIGR01692 HIBADH 3-hydroxyisob 100.0 3.4E-51 7.4E-56 361.0 32.9 281 1-294 7-287 (288)
5 PRK15461 NADH-dependent gamma- 100.0 8.8E-50 1.9E-54 352.9 32.1 277 1-296 12-288 (296)
6 PLN02858 fructose-bisphosphate 100.0 1.8E-47 4E-52 390.6 30.7 278 1-296 15-293 (1378)
7 TIGR01505 tartro_sem_red 2-hyd 100.0 1.7E-46 3.6E-51 332.0 31.6 277 1-297 10-286 (291)
8 PRK11559 garR tartronate semia 100.0 1.5E-45 3.1E-50 326.9 31.0 276 1-296 13-288 (296)
9 PLN02858 fructose-bisphosphate 100.0 7.7E-45 1.7E-49 371.4 30.9 278 1-296 335-613 (1378)
10 PLN02350 phosphogluconate dehy 100.0 1.2E-41 2.7E-46 315.2 25.8 255 1-279 17-299 (493)
11 PRK12490 6-phosphogluconate de 100.0 8.1E-42 1.8E-46 302.6 23.0 270 1-296 11-293 (299)
12 PRK09599 6-phosphogluconate de 100.0 4E-39 8.7E-44 285.8 23.2 267 1-294 11-292 (301)
13 PRK09287 6-phosphogluconate de 100.0 2E-36 4.4E-41 279.2 23.6 246 1-270 1-272 (459)
14 TIGR00872 gnd_rel 6-phosphoglu 100.0 1.2E-33 2.6E-38 250.2 21.1 246 1-271 11-266 (298)
15 PTZ00142 6-phosphogluconate de 100.0 2.9E-33 6.3E-38 259.3 23.7 252 1-276 12-290 (470)
16 TIGR00873 gnd 6-phosphoglucona 100.0 9.3E-33 2E-37 256.0 22.9 247 1-271 10-280 (467)
17 TIGR03026 NDP-sugDHase nucleot 100.0 6.8E-32 1.5E-36 249.3 21.4 247 1-277 11-296 (411)
18 PF03446 NAD_binding_2: NAD bi 100.0 5.4E-31 1.2E-35 213.2 12.3 151 1-165 12-163 (163)
19 PRK14618 NAD(P)H-dependent gly 100.0 6.8E-30 1.5E-34 229.6 13.0 271 1-297 15-323 (328)
20 PRK15182 Vi polysaccharide bio 100.0 2E-28 4.4E-33 225.4 21.1 247 1-276 17-292 (425)
21 PRK11064 wecC UDP-N-acetyl-D-m 100.0 1.7E-27 3.7E-32 219.4 23.8 249 1-276 14-294 (415)
22 COG1023 Gnd Predicted 6-phosph 100.0 1.1E-27 2.4E-32 195.9 17.5 247 1-276 11-273 (300)
23 PRK00094 gpsA NAD(P)H-dependen 100.0 6.7E-28 1.5E-32 216.6 13.7 276 1-296 12-324 (325)
24 PRK15057 UDP-glucose 6-dehydro 99.9 2.2E-26 4.7E-31 209.7 22.0 233 1-276 11-282 (388)
25 COG0240 GpsA Glycerol-3-phosph 99.9 1.2E-26 2.7E-31 201.6 16.6 276 1-295 12-322 (329)
26 PRK14619 NAD(P)H-dependent gly 99.9 3E-27 6.6E-32 210.4 12.8 253 1-297 15-301 (308)
27 PRK06129 3-hydroxyacyl-CoA deh 99.9 9.2E-24 2E-28 188.1 20.3 255 1-293 13-295 (308)
28 COG1004 Ugd Predicted UDP-gluc 99.9 4.2E-23 9.2E-28 181.9 20.6 248 1-276 11-293 (414)
29 PRK12557 H(2)-dependent methyl 99.9 1.3E-22 2.9E-27 181.4 19.2 192 2-210 32-238 (342)
30 PF14833 NAD_binding_11: NAD-b 99.9 2.5E-23 5.5E-28 160.1 10.3 122 167-294 1-122 (122)
31 PLN02353 probable UDP-glucose 99.9 1.1E-20 2.4E-25 175.7 24.0 246 1-273 12-302 (473)
32 COG0677 WecC UDP-N-acetyl-D-ma 99.9 3.6E-21 7.7E-26 169.1 15.8 216 1-227 20-265 (436)
33 COG0362 Gnd 6-phosphogluconate 99.9 2.6E-21 5.7E-26 169.2 14.8 253 1-277 14-292 (473)
34 PTZ00345 glycerol-3-phosphate 99.9 2.7E-21 5.9E-26 174.0 14.3 275 1-296 22-355 (365)
35 TIGR03376 glycerol3P_DH glycer 99.9 1.9E-21 4.1E-26 173.9 11.7 262 1-275 10-330 (342)
36 PRK12439 NAD(P)H-dependent gly 99.8 5.7E-20 1.2E-24 165.7 13.6 276 1-296 18-329 (341)
37 PRK07531 bifunctional 3-hydrox 99.8 8.1E-19 1.8E-23 165.5 18.9 251 1-290 15-291 (495)
38 KOG2653 6-phosphogluconate deh 99.8 1.1E-18 2.4E-23 150.6 13.1 192 1-209 17-224 (487)
39 PRK08268 3-hydroxy-acyl-CoA de 99.8 2.7E-18 5.8E-23 161.8 16.9 178 1-212 18-226 (507)
40 PRK08229 2-dehydropantoate 2-r 99.8 1.3E-18 2.8E-23 157.4 14.1 249 1-284 13-323 (341)
41 PRK09260 3-hydroxybutyryl-CoA 99.8 3.2E-18 6.9E-23 151.2 13.4 242 1-288 12-281 (288)
42 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.8 5.1E-18 1.1E-22 159.5 15.4 238 1-288 16-286 (503)
43 PRK08269 3-hydroxybutyryl-CoA 99.8 4.8E-18 1E-22 151.0 13.5 242 1-288 1-283 (314)
44 PLN02688 pyrroline-5-carboxyla 99.7 5E-17 1.1E-21 142.0 16.2 237 1-281 11-264 (266)
45 PRK07679 pyrroline-5-carboxyla 99.7 2.2E-17 4.7E-22 145.2 14.0 232 1-281 14-269 (279)
46 PRK14620 NAD(P)H-dependent gly 99.7 6.4E-17 1.4E-21 145.4 16.1 275 1-294 11-324 (326)
47 PRK06130 3-hydroxybutyryl-CoA 99.7 1.5E-16 3.3E-21 142.1 14.9 185 1-213 15-221 (311)
48 PRK11199 tyrA bifunctional cho 99.7 3.4E-16 7.4E-21 142.6 16.6 168 1-206 110-279 (374)
49 PRK08507 prephenate dehydrogen 99.7 8.6E-16 1.9E-20 134.8 18.4 184 1-211 11-209 (275)
50 TIGR01724 hmd_rel H2-forming N 99.7 1.7E-15 3.7E-20 131.2 16.7 147 2-163 32-192 (341)
51 PRK07417 arogenate dehydrogena 99.7 1.2E-15 2.7E-20 134.0 14.1 166 1-187 11-189 (279)
52 PLN02545 3-hydroxybutyryl-CoA 99.7 1.4E-15 3E-20 134.8 14.4 181 1-212 15-223 (295)
53 PRK07530 3-hydroxybutyryl-CoA 99.7 1.9E-15 4E-20 133.8 13.6 182 1-212 15-223 (292)
54 PRK08655 prephenate dehydrogen 99.6 2.2E-14 4.8E-19 133.2 18.3 187 1-209 12-203 (437)
55 PRK07819 3-hydroxybutyryl-CoA 99.6 1.7E-14 3.6E-19 127.0 15.0 242 1-287 16-286 (286)
56 PRK06035 3-hydroxyacyl-CoA deh 99.6 1.1E-14 2.3E-19 128.9 11.0 183 1-212 14-225 (291)
57 PRK07066 3-hydroxybutyryl-CoA 99.6 1.9E-13 4E-18 121.4 18.4 188 1-216 18-228 (321)
58 PRK08293 3-hydroxybutyryl-CoA 99.6 8.9E-14 1.9E-18 122.8 14.6 184 1-213 14-226 (287)
59 PRK06545 prephenate dehydrogen 99.5 5.8E-13 1.3E-17 121.1 17.2 187 1-211 11-213 (359)
60 PRK05808 3-hydroxybutyryl-CoA 99.5 8.8E-13 1.9E-17 116.2 13.6 183 1-212 14-222 (282)
61 PRK07502 cyclohexadienyl dehyd 99.4 5.5E-12 1.2E-16 112.5 17.5 162 1-180 17-194 (307)
62 PRK11880 pyrroline-5-carboxyla 99.4 4.5E-11 9.8E-16 104.5 19.1 243 1-281 13-265 (267)
63 PRK06476 pyrroline-5-carboxyla 99.4 1.7E-11 3.7E-16 106.6 15.6 176 1-211 11-196 (258)
64 PRK07680 late competence prote 99.4 3.5E-11 7.7E-16 105.5 17.6 185 1-211 11-205 (273)
65 PRK12921 2-dehydropantoate 2-r 99.4 6.5E-11 1.4E-15 105.4 18.8 246 1-277 11-300 (305)
66 COG2085 Predicted dinucleotide 99.4 4.7E-12 1E-16 103.8 10.1 159 1-173 12-188 (211)
67 PF03721 UDPG_MGDP_dh_N: UDP-g 99.3 6.1E-12 1.3E-16 103.5 9.9 142 1-151 11-184 (185)
68 KOG2666 UDP-glucose/GDP-mannos 99.3 6.3E-10 1.4E-14 95.6 19.9 223 14-263 27-290 (481)
69 PRK12491 pyrroline-5-carboxyla 99.3 2E-10 4.3E-15 100.4 17.3 243 1-280 13-266 (272)
70 TIGR01915 npdG NADPH-dependent 99.3 2.5E-11 5.4E-16 102.9 11.0 159 1-174 12-198 (219)
71 PF02153 PDH: Prephenate dehyd 99.3 2.4E-10 5.2E-15 99.3 15.8 161 5-183 1-176 (258)
72 PRK06522 2-dehydropantoate 2-r 99.3 4.2E-10 9.1E-15 100.1 17.7 245 1-278 11-298 (304)
73 PF01210 NAD_Gly3P_dh_N: NAD-d 99.2 2.9E-12 6.2E-17 102.9 2.8 132 1-145 10-156 (157)
74 COG1250 FadB 3-hydroxyacyl-CoA 99.2 1.5E-10 3.3E-15 101.4 13.3 242 1-289 14-285 (307)
75 COG0287 TyrA Prephenate dehydr 99.2 8.9E-10 1.9E-14 96.0 15.5 162 1-180 14-186 (279)
76 TIGR02440 FadJ fatty oxidation 99.2 2.3E-10 4.9E-15 112.4 12.2 240 1-288 315-582 (699)
77 PLN02256 arogenate dehydrogena 99.2 1.6E-09 3.5E-14 96.0 16.3 158 1-176 47-215 (304)
78 PRK11730 fadB multifunctional 99.2 2.3E-10 5E-15 112.6 11.8 180 1-212 324-531 (715)
79 PLN02712 arogenate dehydrogena 99.2 5.6E-10 1.2E-14 108.6 14.2 153 1-172 380-544 (667)
80 PRK11154 fadJ multifunctional 99.1 4.6E-10 1E-14 110.4 12.3 239 1-288 320-587 (708)
81 TIGR02437 FadB fatty oxidation 99.1 4.7E-10 1E-14 110.3 11.8 181 1-213 324-532 (714)
82 PRK07634 pyrroline-5-carboxyla 99.1 2.3E-09 4.9E-14 92.5 14.5 184 1-211 15-209 (245)
83 COG0345 ProC Pyrroline-5-carbo 99.1 2.2E-08 4.7E-13 86.3 19.4 240 1-281 12-264 (266)
84 PRK14806 bifunctional cyclohex 99.1 3.5E-09 7.6E-14 105.3 16.0 158 1-175 14-187 (735)
85 TIGR00745 apbA_panE 2-dehydrop 99.1 1.6E-08 3.4E-13 89.5 18.2 247 1-277 2-290 (293)
86 PRK06249 2-dehydropantoate 2-r 99.1 1.9E-08 4.1E-13 90.0 18.8 245 1-277 16-308 (313)
87 TIGR02441 fa_ox_alpha_mit fatt 99.1 9.6E-10 2.1E-14 108.3 11.1 176 1-208 346-549 (737)
88 PRK05479 ketol-acid reductoiso 99.0 1.4E-08 3E-13 90.3 15.5 181 1-203 28-223 (330)
89 PLN02712 arogenate dehydrogena 99.0 1.1E-08 2.3E-13 99.8 15.9 157 1-175 63-230 (667)
90 PF00984 UDPG_MGDP_dh: UDP-glu 99.0 8.6E-09 1.9E-13 75.1 11.2 93 167-275 2-94 (96)
91 PF10727 Rossmann-like: Rossma 99.0 3.5E-10 7.6E-15 86.7 3.9 94 1-99 21-116 (127)
92 PF02737 3HCDH_N: 3-hydroxyacy 99.0 3.6E-10 7.8E-15 92.7 3.8 142 1-164 10-178 (180)
93 PRK08818 prephenate dehydrogen 98.9 3.3E-08 7.2E-13 89.5 14.8 147 1-176 16-166 (370)
94 PTZ00431 pyrroline carboxylate 98.9 8.9E-08 1.9E-12 83.3 16.4 236 1-280 14-259 (260)
95 TIGR00112 proC pyrroline-5-car 98.9 1.9E-07 4.2E-12 80.4 17.0 172 13-211 9-187 (245)
96 PRK06928 pyrroline-5-carboxyla 98.8 1.3E-07 2.8E-12 83.1 15.2 184 1-211 12-208 (277)
97 PF03807 F420_oxidored: NADP o 98.8 3E-09 6.6E-14 77.9 4.1 80 1-88 10-95 (96)
98 KOG2711 Glycerol-3-phosphate d 98.7 3.9E-08 8.4E-13 85.7 7.9 277 1-298 32-368 (372)
99 KOG2304 3-hydroxyacyl-CoA dehy 98.7 8.7E-08 1.9E-12 78.9 8.4 242 1-287 22-297 (298)
100 COG1893 ApbA Ketopantoate redu 98.6 1.5E-06 3.2E-11 77.3 15.6 250 1-279 11-301 (307)
101 PRK05708 2-dehydropantoate 2-r 98.6 1.4E-06 3.1E-11 77.5 14.7 251 1-282 13-302 (305)
102 cd01065 NAD_bind_Shikimate_DH 98.5 2.3E-07 5E-12 74.1 6.4 95 1-103 30-130 (155)
103 TIGR00465 ilvC ketol-acid redu 98.5 2.7E-06 5.8E-11 75.8 13.2 138 1-159 14-161 (314)
104 PRK07574 formate dehydrogenase 98.4 1.1E-06 2.4E-11 80.2 8.8 98 1-103 203-300 (385)
105 PRK14194 bifunctional 5,10-met 98.4 9E-07 2E-11 77.5 7.3 63 1-89 171-233 (301)
106 PLN03139 formate dehydrogenase 98.4 1.7E-06 3.7E-11 78.9 8.9 98 1-103 210-307 (386)
107 COG4007 Predicted dehydrogenas 98.3 4.2E-05 9.1E-10 64.5 15.7 186 2-203 33-233 (340)
108 PRK14188 bifunctional 5,10-met 98.3 2.1E-06 4.6E-11 75.3 7.0 62 1-89 170-232 (296)
109 PRK13403 ketol-acid reductoiso 98.3 1.9E-06 4E-11 76.0 6.6 82 1-89 27-108 (335)
110 PRK13243 glyoxylate reductase; 98.3 2.8E-06 6.1E-11 76.5 7.8 96 1-103 161-256 (333)
111 PRK06436 glycerate dehydrogena 98.2 3E-06 6.5E-11 75.1 7.3 92 1-103 133-225 (303)
112 PRK12480 D-lactate dehydrogena 98.2 5.4E-06 1.2E-10 74.5 8.0 94 1-103 157-250 (330)
113 KOG2305 3-hydroxyacyl-CoA dehy 98.2 9.8E-06 2.1E-10 67.1 8.6 178 1-213 14-226 (313)
114 PRK08605 D-lactate dehydrogena 98.2 5.6E-06 1.2E-10 74.5 7.8 95 1-103 157-252 (332)
115 PRK06444 prephenate dehydrogen 98.0 0.00026 5.6E-09 58.7 14.1 118 1-178 12-134 (197)
116 PF02826 2-Hacid_dh_C: D-isome 98.0 2.1E-05 4.5E-10 64.4 6.5 97 1-103 47-143 (178)
117 PRK15469 ghrA bifunctional gly 97.9 1.7E-05 3.7E-10 70.7 6.1 96 1-103 147-242 (312)
118 TIGR01327 PGDH D-3-phosphoglyc 97.9 2.3E-05 5E-10 74.9 7.4 97 1-103 149-245 (525)
119 PRK14179 bifunctional 5,10-met 97.9 3.2E-05 7E-10 67.4 7.4 63 1-89 170-232 (284)
120 TIGR02853 spore_dpaA dipicolin 97.9 4.3E-05 9.2E-10 67.4 8.4 83 1-93 162-246 (287)
121 PRK13581 D-3-phosphoglycerate 97.9 2.4E-05 5.2E-10 74.8 7.0 96 1-103 151-246 (526)
122 PRK06141 ornithine cyclodeamin 97.8 2.6E-05 5.6E-10 69.7 5.3 90 1-102 136-233 (314)
123 PF07479 NAD_Gly3P_dh_C: NAD-d 97.8 7.6E-07 1.7E-11 70.4 -4.4 109 167-275 21-137 (149)
124 KOG2380 Prephenate dehydrogena 97.7 0.00053 1.1E-08 60.3 11.8 145 1-164 63-219 (480)
125 PF07991 IlvN: Acetohydroxy ac 97.7 6.6E-05 1.4E-09 59.5 5.3 80 2-88 16-96 (165)
126 TIGR00507 aroE shikimate 5-deh 97.7 0.00011 2.4E-09 64.3 6.8 95 1-103 128-228 (270)
127 PRK13302 putative L-aspartate 97.6 0.00025 5.3E-09 62.1 8.0 93 1-103 17-114 (271)
128 PLN02928 oxidoreductase family 97.6 0.00022 4.9E-09 64.6 7.4 97 1-103 170-278 (347)
129 PRK08306 dipicolinate synthase 97.6 0.00027 5.9E-09 62.6 7.7 82 1-92 163-246 (296)
130 cd01075 NAD_bind_Leu_Phe_Val_D 97.5 0.00038 8.3E-09 58.0 8.0 77 1-89 39-117 (200)
131 PRK00257 erythronate-4-phospha 97.5 0.00026 5.7E-09 64.7 7.2 93 1-103 127-223 (381)
132 COG5495 Uncharacterized conser 97.5 0.0032 7E-08 52.5 12.3 178 5-202 21-206 (289)
133 COG0111 SerA Phosphoglycerate 97.3 0.00065 1.4E-08 60.8 7.4 97 1-103 153-249 (324)
134 COG1052 LdhA Lactate dehydroge 97.3 0.00082 1.8E-08 60.1 7.5 96 1-103 157-252 (324)
135 PRK11790 D-3-phosphoglycerate 97.3 0.00069 1.5E-08 62.8 7.0 94 1-103 162-255 (409)
136 PRK13304 L-aspartate dehydroge 97.2 0.0012 2.6E-08 57.6 7.7 93 1-103 12-111 (265)
137 PF02558 ApbA: Ketopantoate re 97.2 0.00039 8.5E-09 55.1 4.4 85 1-92 9-107 (151)
138 PRK15409 bifunctional glyoxyla 97.1 0.002 4.4E-08 57.8 7.4 96 1-103 156-252 (323)
139 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.0013 2.8E-08 58.8 5.4 82 1-88 189-274 (311)
140 PF01488 Shikimate_DH: Shikima 96.9 0.00059 1.3E-08 53.2 2.7 58 1-58 23-87 (135)
141 PF00670 AdoHcyase_NAD: S-aden 96.9 0.0036 7.7E-08 49.9 7.1 80 2-92 35-115 (162)
142 TIGR02371 ala_DH_arch alanine 96.9 0.0019 4.1E-08 58.1 5.5 71 11-92 151-227 (325)
143 PRK08410 2-hydroxyacid dehydro 96.8 0.0035 7.5E-08 56.0 6.7 93 1-103 156-248 (311)
144 PTZ00075 Adenosylhomocysteinas 96.8 0.0048 1E-07 57.6 7.8 80 1-91 265-345 (476)
145 PF03720 UDPG_MGDP_dh_C: UDP-g 96.8 0.0026 5.5E-08 47.3 4.8 81 3-89 20-103 (106)
146 smart00859 Semialdhyde_dh Semi 96.6 0.0023 5.1E-08 48.7 3.9 80 2-90 12-102 (122)
147 PRK15438 erythronate-4-phospha 96.6 0.0067 1.5E-07 55.4 7.3 94 1-103 127-223 (378)
148 PRK06487 glycerate dehydrogena 96.6 0.0065 1.4E-07 54.4 7.1 91 1-103 159-249 (317)
149 PRK06932 glycerate dehydrogena 96.6 0.0064 1.4E-07 54.4 6.9 92 1-103 158-249 (314)
150 PRK09310 aroDE bifunctional 3- 96.6 0.0079 1.7E-07 57.0 7.8 84 1-102 343-429 (477)
151 PRK05476 S-adenosyl-L-homocyst 96.6 0.0087 1.9E-07 55.5 7.7 81 1-91 223-303 (425)
152 PF00393 6PGD: 6-phosphoglucon 96.6 0.0051 1.1E-07 53.8 5.8 102 169-277 1-113 (291)
153 COG1748 LYS9 Saccharopine dehy 96.5 0.011 2.5E-07 53.8 8.2 92 1-103 12-114 (389)
154 KOG0069 Glyoxylate/hydroxypyru 96.5 0.0083 1.8E-07 53.5 7.0 97 1-103 173-269 (336)
155 PRK00961 H(2)-dependent methyl 96.5 0.096 2.1E-06 45.1 12.9 111 33-163 128-241 (342)
156 PLN02494 adenosylhomocysteinas 96.5 0.013 2.7E-07 54.8 8.1 79 1-90 265-344 (477)
157 TIGR00936 ahcY adenosylhomocys 96.4 0.011 2.4E-07 54.5 7.5 81 1-91 206-286 (406)
158 cd01078 NAD_bind_H4MPT_DH NADP 96.4 0.0096 2.1E-07 49.3 6.5 82 1-91 40-133 (194)
159 PLN02306 hydroxypyruvate reduc 96.4 0.013 2.9E-07 53.8 7.9 98 1-103 176-288 (386)
160 TIGR01723 hmd_TIGR 5,10-methen 96.3 0.12 2.6E-06 44.6 12.6 111 33-163 126-239 (340)
161 PF10728 DUF2520: Domain of un 96.3 0.043 9.2E-07 42.5 9.0 68 136-207 3-73 (132)
162 PRK07340 ornithine cyclodeamin 96.3 0.019 4.2E-07 51.1 7.9 80 1-92 136-222 (304)
163 PLN00203 glutamyl-tRNA reducta 96.2 0.0069 1.5E-07 57.7 5.2 57 1-57 277-340 (519)
164 cd01080 NAD_bind_m-THF_DH_Cycl 96.1 0.02 4.2E-07 46.3 6.7 61 2-88 57-117 (168)
165 PF01408 GFO_IDH_MocA: Oxidore 96.1 0.034 7.3E-07 41.9 7.7 93 2-103 12-111 (120)
166 TIGR01035 hemA glutamyl-tRNA r 96.1 0.0069 1.5E-07 56.4 4.5 58 1-58 191-252 (417)
167 PF02423 OCD_Mu_crystall: Orni 96.1 0.0089 1.9E-07 53.5 4.9 70 14-92 154-229 (313)
168 cd00401 AdoHcyase S-adenosyl-L 96.1 0.022 4.8E-07 52.7 7.6 79 1-89 213-291 (413)
169 TIGR00518 alaDH alanine dehydr 96.1 0.011 2.4E-07 54.2 5.5 84 1-88 178-268 (370)
170 PRK06823 ornithine cyclodeamin 96.1 0.0089 1.9E-07 53.5 4.7 68 14-92 154-227 (315)
171 PRK11861 bifunctional prephena 96.0 0.072 1.6E-06 52.8 11.2 121 50-187 1-133 (673)
172 PRK09287 6-phosphogluconate de 96.0 0.042 9.2E-07 51.7 9.1 136 143-283 271-426 (459)
173 COG0059 IlvC Ketol-acid reduct 95.9 0.02 4.4E-07 49.9 5.9 68 2-72 30-99 (338)
174 PRK06407 ornithine cyclodeamin 95.9 0.013 2.8E-07 52.1 4.8 68 14-92 143-217 (301)
175 PF02882 THF_DHG_CYH_C: Tetrah 95.8 0.054 1.2E-06 43.4 7.9 42 38-91 71-112 (160)
176 TIGR00873 gnd 6-phosphoglucona 95.8 0.06 1.3E-06 50.8 9.4 110 169-281 312-432 (467)
177 TIGR02992 ectoine_eutC ectoine 95.8 0.021 4.5E-07 51.4 5.9 56 2-57 141-205 (326)
178 cd05212 NAD_bind_m-THF_DH_Cycl 95.7 0.05 1.1E-06 42.5 7.2 67 12-90 27-103 (140)
179 PRK14175 bifunctional 5,10-met 95.7 0.038 8.3E-07 48.4 7.0 62 1-88 170-231 (286)
180 PRK00045 hemA glutamyl-tRNA re 95.6 0.014 3E-07 54.6 4.4 59 1-59 193-255 (423)
181 PRK00048 dihydrodipicolinate r 95.6 0.055 1.2E-06 47.0 7.8 90 1-99 13-104 (257)
182 PRK07589 ornithine cyclodeamin 95.6 0.034 7.5E-07 50.3 6.6 71 13-92 154-230 (346)
183 PRK13940 glutamyl-tRNA reducta 95.6 0.019 4.2E-07 53.3 5.1 58 1-58 192-254 (414)
184 PRK14189 bifunctional 5,10-met 95.6 0.057 1.2E-06 47.3 7.6 61 2-88 171-231 (285)
185 PRK08291 ectoine utilization p 95.5 0.026 5.6E-07 50.9 5.6 56 2-57 144-208 (330)
186 COG0373 HemA Glutamyl-tRNA red 95.5 0.023 4.9E-07 52.3 5.1 58 1-58 189-250 (414)
187 COG0569 TrkA K+ transport syst 95.5 0.023 5E-07 48.3 4.8 63 1-65 11-83 (225)
188 COG2423 Predicted ornithine cy 95.4 0.031 6.8E-07 50.1 5.7 45 14-58 156-207 (330)
189 PRK10669 putative cation:proto 95.3 0.025 5.3E-07 54.9 5.0 59 1-59 428-494 (558)
190 PRK03659 glutathione-regulated 95.3 0.03 6.5E-07 54.7 5.4 64 1-65 411-482 (601)
191 PRK08618 ornithine cyclodeamin 95.2 0.063 1.4E-06 48.3 7.1 80 2-93 139-227 (325)
192 TIGR01921 DAP-DH diaminopimela 95.2 0.29 6.4E-06 43.7 11.1 76 1-88 14-92 (324)
193 PRK04148 hypothetical protein; 95.2 0.092 2E-06 40.6 6.8 57 2-58 28-89 (134)
194 PRK00258 aroE shikimate 5-dehy 95.2 0.03 6.6E-07 49.2 4.8 57 1-57 134-196 (278)
195 PF13460 NAD_binding_10: NADH( 95.1 0.03 6.4E-07 45.5 4.3 55 1-57 10-71 (183)
196 PRK06046 alanine dehydrogenase 95.0 0.054 1.2E-06 48.7 6.0 80 1-92 140-228 (326)
197 PRK06223 malate dehydrogenase; 95.0 0.08 1.7E-06 47.2 7.1 55 1-56 13-80 (307)
198 TIGR01763 MalateDH_bact malate 95.0 0.044 9.6E-07 48.8 5.4 57 1-58 12-81 (305)
199 PRK06199 ornithine cyclodeamin 95.0 0.027 5.8E-07 51.7 4.0 44 14-57 182-234 (379)
200 PRK10792 bifunctional 5,10-met 94.9 0.12 2.5E-06 45.4 7.6 61 2-88 172-232 (285)
201 PRK12549 shikimate 5-dehydroge 94.9 0.042 9E-07 48.5 4.8 57 1-57 138-203 (284)
202 cd05297 GH4_alpha_glucosidase_ 94.8 0.027 5.9E-07 52.6 3.6 48 10-57 26-85 (423)
203 TIGR01761 thiaz-red thiazoliny 94.7 0.24 5.2E-06 44.8 9.4 95 1-103 13-113 (343)
204 cd00650 LDH_MDH_like NAD-depen 94.7 0.054 1.2E-06 47.2 5.0 55 1-55 10-79 (263)
205 cd01339 LDH-like_MDH L-lactate 94.7 0.069 1.5E-06 47.4 5.8 56 1-57 9-77 (300)
206 PF02254 TrkA_N: TrkA-N domain 94.7 0.047 1E-06 40.9 4.1 59 1-59 9-75 (116)
207 PLN02516 methylenetetrahydrofo 94.7 0.15 3.3E-06 44.9 7.7 62 2-89 180-241 (299)
208 PTZ00142 6-phosphogluconate de 94.6 0.36 7.8E-06 45.7 10.5 111 167-280 316-437 (470)
209 cd01079 NAD_bind_m-THF_DH NAD 94.6 0.17 3.7E-06 41.6 7.2 79 1-90 74-159 (197)
210 PRK14170 bifunctional 5,10-met 94.6 0.18 3.8E-06 44.2 7.7 63 2-90 170-232 (284)
211 PRK14186 bifunctional 5,10-met 94.5 0.17 3.8E-06 44.6 7.7 62 2-89 171-232 (297)
212 PRK14177 bifunctional 5,10-met 94.5 0.19 4E-06 44.1 7.8 63 2-90 172-234 (284)
213 PRK14173 bifunctional 5,10-met 94.5 0.18 3.9E-06 44.3 7.6 62 2-89 168-229 (287)
214 PRK05225 ketol-acid reductoiso 94.5 0.044 9.6E-07 50.8 4.0 62 2-66 48-115 (487)
215 PF01113 DapB_N: Dihydrodipico 94.4 0.088 1.9E-06 40.2 5.1 91 1-100 12-112 (124)
216 PRK14172 bifunctional 5,10-met 94.4 0.19 4.2E-06 43.9 7.6 61 2-88 171-231 (278)
217 PRK03562 glutathione-regulated 94.4 0.097 2.1E-06 51.4 6.4 64 1-65 411-482 (621)
218 PRK14166 bifunctional 5,10-met 94.4 0.19 4.2E-06 43.9 7.6 39 38-88 192-230 (282)
219 cd05291 HicDH_like L-2-hydroxy 94.3 0.071 1.5E-06 47.5 5.0 57 1-57 11-79 (306)
220 PRK14190 bifunctional 5,10-met 94.3 0.17 3.8E-06 44.3 7.2 61 2-88 171-231 (284)
221 TIGR01809 Shik-DH-AROM shikima 94.3 0.069 1.5E-06 47.0 4.8 58 1-58 136-202 (282)
222 PRK14169 bifunctional 5,10-met 94.2 0.22 4.7E-06 43.6 7.5 39 38-88 191-229 (282)
223 TIGR03855 NAD_NadX aspartate d 94.1 0.19 4.1E-06 42.8 6.8 78 16-103 5-87 (229)
224 PRK14180 bifunctional 5,10-met 94.1 0.21 4.7E-06 43.7 7.2 61 2-88 171-231 (282)
225 PRK14193 bifunctional 5,10-met 94.0 0.25 5.4E-06 43.3 7.6 40 38-89 195-234 (284)
226 KOG3124 Pyrroline-5-carboxylat 94.0 1.3 2.8E-05 37.9 11.5 243 1-281 11-265 (267)
227 PRK14176 bifunctional 5,10-met 94.0 0.24 5.2E-06 43.5 7.4 62 2-89 177-238 (287)
228 PRK14187 bifunctional 5,10-met 94.0 0.25 5.4E-06 43.5 7.5 61 2-88 173-233 (294)
229 PRK14178 bifunctional 5,10-met 93.9 0.2 4.4E-06 43.7 6.7 39 38-88 187-225 (279)
230 COG0673 MviM Predicted dehydro 93.8 0.43 9.3E-06 42.9 9.1 91 4-103 18-116 (342)
231 cd05292 LDH_2 A subgroup of L- 93.8 0.12 2.5E-06 46.2 5.2 57 1-57 11-78 (308)
232 PRK14182 bifunctional 5,10-met 93.8 0.3 6.5E-06 42.7 7.5 61 2-88 170-230 (282)
233 PRK14171 bifunctional 5,10-met 93.8 0.31 6.7E-06 42.8 7.6 61 2-88 172-232 (288)
234 PRK14183 bifunctional 5,10-met 93.7 0.31 6.7E-06 42.7 7.5 62 2-89 170-231 (281)
235 KOG1683 Hydroxyacyl-CoA dehydr 93.7 0.095 2.1E-06 47.0 4.4 87 1-92 1-111 (380)
236 TIGR00036 dapB dihydrodipicoli 93.5 0.41 9E-06 41.7 8.2 93 1-102 13-115 (266)
237 CHL00194 ycf39 Ycf39; Provisio 93.5 0.13 2.9E-06 45.8 5.2 55 1-55 12-73 (317)
238 PRK14191 bifunctional 5,10-met 93.5 0.24 5.2E-06 43.4 6.5 61 2-88 170-230 (285)
239 PLN02897 tetrahydrofolate dehy 93.5 0.33 7E-06 43.6 7.4 62 2-89 227-288 (345)
240 PRK09496 trkA potassium transp 93.3 0.1 2.3E-06 49.0 4.4 58 1-58 11-77 (453)
241 cd05191 NAD_bind_amino_acid_DH 93.3 0.29 6.3E-06 34.6 5.7 33 1-59 34-67 (86)
242 PLN02616 tetrahydrofolate dehy 93.2 0.37 8.1E-06 43.5 7.4 61 2-88 244-304 (364)
243 COG1712 Predicted dinucleotide 93.2 0.62 1.3E-05 39.2 8.0 62 2-66 12-78 (255)
244 PF05368 NmrA: NmrA-like famil 93.2 0.15 3.2E-06 43.3 4.7 56 1-56 10-74 (233)
245 PTZ00117 malate dehydrogenase; 93.1 0.27 5.9E-06 44.1 6.5 53 1-54 16-81 (319)
246 PRK14181 bifunctional 5,10-met 93.1 0.4 8.6E-06 42.1 7.3 40 38-89 192-231 (287)
247 COG1090 Predicted nucleoside-d 92.8 0.16 3.5E-06 44.0 4.3 56 1-56 10-66 (297)
248 COG1004 Ugd Predicted UDP-gluc 92.8 0.26 5.7E-06 44.9 5.8 75 3-86 333-407 (414)
249 PRK14168 bifunctional 5,10-met 92.7 0.57 1.2E-05 41.4 7.7 40 38-89 200-239 (297)
250 PF13380 CoA_binding_2: CoA bi 92.7 0.099 2.1E-06 39.5 2.6 59 2-67 16-74 (116)
251 KOG3007 Mu-crystallin [Amino a 92.5 0.23 5E-06 42.7 4.8 76 14-101 165-250 (333)
252 PF01118 Semialdhyde_dh: Semia 92.3 0.091 2E-06 39.9 2.0 80 1-90 11-100 (121)
253 PRK14185 bifunctional 5,10-met 92.2 0.62 1.4E-05 41.0 7.3 40 38-89 196-235 (293)
254 PRK14192 bifunctional 5,10-met 92.2 0.5 1.1E-05 41.6 6.8 61 2-88 172-232 (283)
255 PRK14184 bifunctional 5,10-met 92.0 0.55 1.2E-05 41.2 6.8 39 38-88 196-234 (286)
256 COG4074 Mth H2-forming N5,N10- 92.0 4.2 9E-05 34.1 11.4 64 33-102 126-189 (343)
257 PRK05678 succinyl-CoA syntheta 91.8 0.7 1.5E-05 40.8 7.2 91 2-103 21-114 (291)
258 cd05311 NAD_bind_2_malic_enz N 91.6 0.89 1.9E-05 38.6 7.5 80 1-90 36-131 (226)
259 TIGR01850 argC N-acetyl-gamma- 91.6 0.31 6.8E-06 44.2 5.0 80 1-90 12-102 (346)
260 COG0190 FolD 5,10-methylene-te 91.6 0.85 1.8E-05 39.8 7.3 63 1-89 168-230 (283)
261 PF03435 Saccharop_dh: Sacchar 91.5 0.27 5.9E-06 45.3 4.6 57 1-57 9-78 (386)
262 PRK12548 shikimate 5-dehydroge 91.5 0.35 7.7E-06 42.7 5.1 57 1-57 137-210 (289)
263 TIGR00561 pntA NAD(P) transhyd 91.2 0.97 2.1E-05 43.1 8.0 53 2-54 176-255 (511)
264 COG2910 Putative NADH-flavin r 91.2 0.3 6.5E-06 39.8 3.9 56 2-57 13-73 (211)
265 cd00300 LDH_like L-lactate deh 91.1 0.42 9.1E-06 42.5 5.2 57 1-58 9-78 (300)
266 KOG1502 Flavonol reductase/cin 90.8 0.4 8.6E-06 42.8 4.7 54 1-54 18-86 (327)
267 TIGR01019 sucCoAalpha succinyl 90.8 1.1 2.4E-05 39.5 7.5 91 2-103 19-112 (286)
268 PRK14174 bifunctional 5,10-met 90.8 0.96 2.1E-05 40.0 7.1 39 38-88 198-236 (295)
269 PRK14167 bifunctional 5,10-met 90.7 1.1 2.4E-05 39.6 7.3 40 38-89 196-235 (297)
270 PRK13301 putative L-aspartate 90.6 1.4 3.1E-05 38.2 7.7 91 1-102 13-111 (267)
271 PRK06718 precorrin-2 dehydroge 90.5 1.5 3.3E-05 36.5 7.7 58 1-58 21-82 (202)
272 PF01262 AlaDh_PNT_C: Alanine 90.2 0.46 1E-05 38.3 4.3 81 2-87 32-139 (168)
273 PRK08306 dipicolinate synthase 90.0 0.48 1E-05 42.0 4.5 50 4-56 16-65 (296)
274 PRK09496 trkA potassium transp 89.6 0.48 1E-05 44.5 4.6 58 1-58 242-309 (453)
275 COG0300 DltE Short-chain dehyd 89.6 0.43 9.2E-06 41.5 3.8 32 1-32 18-49 (265)
276 PLN03209 translocon at the inn 89.5 0.55 1.2E-05 45.3 4.8 30 1-30 92-121 (576)
277 PRK00436 argC N-acetyl-gamma-g 89.5 0.51 1.1E-05 42.8 4.5 79 1-90 14-102 (343)
278 PRK06182 short chain dehydroge 89.4 0.8 1.7E-05 39.7 5.5 31 1-31 15-45 (273)
279 COG0169 AroE Shikimate 5-dehyd 88.9 0.58 1.3E-05 41.1 4.2 82 2-91 138-230 (283)
280 KOG2741 Dimeric dihydrodiol de 88.7 4.8 0.0001 36.1 9.7 83 12-103 31-121 (351)
281 PTZ00082 L-lactate dehydrogena 88.6 0.62 1.3E-05 41.8 4.3 54 1-55 17-83 (321)
282 TIGR01777 yfcH conserved hypot 88.6 0.53 1.1E-05 41.0 3.8 55 1-55 10-66 (292)
283 PF00107 ADH_zinc_N: Zinc-bind 88.5 0.56 1.2E-05 35.6 3.5 35 1-35 2-36 (130)
284 PRK14982 acyl-ACP reductase; P 88.4 0.92 2E-05 41.0 5.2 77 1-87 167-246 (340)
285 COG1064 AdhP Zn-dependent alco 88.4 1.5 3.2E-05 39.5 6.5 59 5-65 181-246 (339)
286 PLN02819 lysine-ketoglutarate 88.3 1.5 3.2E-05 45.5 7.2 92 1-103 580-694 (1042)
287 KOG1014 17 beta-hydroxysteroid 88.1 0.6 1.3E-05 41.1 3.7 32 1-32 61-92 (312)
288 TIGR03466 HpnA hopanoid-associ 87.7 0.63 1.4E-05 41.3 3.8 55 1-55 12-73 (328)
289 PRK00683 murD UDP-N-acetylmura 87.6 0.87 1.9E-05 42.5 4.8 57 1-57 14-70 (418)
290 TIGR03649 ergot_EASG ergot alk 87.6 0.68 1.5E-05 40.4 3.9 56 1-56 11-77 (285)
291 PRK01390 murD UDP-N-acetylmura 87.3 1.5 3.2E-05 41.5 6.2 51 2-52 21-71 (460)
292 PLN02353 probable UDP-glucose 87.3 1.8 4E-05 41.0 6.7 83 3-91 347-451 (473)
293 PRK09424 pntA NAD(P) transhydr 87.2 1.7 3.8E-05 41.5 6.5 34 2-35 177-210 (509)
294 PLN02968 Probable N-acetyl-gam 87.0 0.92 2E-05 41.7 4.4 78 2-90 51-137 (381)
295 PRK01710 murD UDP-N-acetylmura 86.8 1.3 2.9E-05 41.7 5.6 52 2-53 26-84 (458)
296 PRK12550 shikimate 5-dehydroge 86.7 1.3 2.9E-05 38.7 5.1 53 2-56 134-188 (272)
297 TIGR02717 AcCoA-syn-alpha acet 86.6 3.9 8.4E-05 38.6 8.5 60 1-67 22-83 (447)
298 PRK14027 quinate/shikimate deh 86.3 1.5 3.1E-05 38.7 5.2 56 2-57 139-205 (283)
299 PRK05993 short chain dehydroge 86.3 1.1 2.3E-05 39.1 4.4 32 1-32 16-47 (277)
300 TIGR02354 thiF_fam2 thiamine b 86.1 1.8 3.9E-05 36.0 5.4 22 1-22 32-54 (200)
301 PRK13303 L-aspartate dehydroge 86.1 2.8 6E-05 36.5 6.8 93 1-103 12-111 (265)
302 PRK11579 putative oxidoreducta 86.0 6.2 0.00013 35.7 9.3 87 6-103 21-113 (346)
303 PF00056 Ldh_1_N: lactate/mala 85.9 0.71 1.5E-05 36.1 2.7 55 2-56 13-79 (141)
304 COG0499 SAM1 S-adenosylhomocys 85.9 1.6 3.5E-05 39.3 5.2 78 1-88 220-297 (420)
305 PLN02383 aspartate semialdehyd 85.7 0.74 1.6E-05 41.7 3.1 78 2-89 20-102 (344)
306 COG4221 Short-chain alcohol de 85.7 0.98 2.1E-05 38.5 3.6 32 1-32 18-49 (246)
307 KOG0068 D-3-phosphoglycerate d 85.5 3.3 7.2E-05 37.1 6.9 94 1-102 157-251 (406)
308 PRK03369 murD UDP-N-acetylmura 85.3 1.9 4.2E-05 41.1 5.9 55 2-56 24-80 (488)
309 PRK06719 precorrin-2 dehydroge 85.1 3.6 7.9E-05 32.7 6.5 97 2-103 25-142 (157)
310 TIGR03026 NDP-sugDHase nucleot 85.0 2.2 4.8E-05 39.7 6.1 53 3-58 336-388 (411)
311 PF03447 NAD_binding_3: Homose 84.9 1.5 3.2E-05 32.8 4.0 64 1-66 5-77 (117)
312 PF02056 Glyco_hydro_4: Family 84.7 0.72 1.6E-05 37.8 2.3 44 14-57 29-84 (183)
313 PLN00141 Tic62-NAD(P)-related 84.6 2 4.3E-05 36.8 5.2 29 1-29 29-57 (251)
314 PRK08177 short chain dehydroge 84.5 2.1 4.5E-05 35.9 5.2 30 1-30 13-42 (225)
315 COG0002 ArgC Acetylglutamate s 84.5 2.2 4.9E-05 38.3 5.4 79 2-90 15-104 (349)
316 PRK14106 murD UDP-N-acetylmura 84.3 2.1 4.5E-05 40.2 5.6 57 1-57 16-79 (450)
317 PRK05866 short chain dehydroge 84.3 2 4.3E-05 37.9 5.2 31 1-31 52-82 (293)
318 TIGR02853 spore_dpaA dipicolin 84.1 1.4 3E-05 39.0 4.0 50 4-56 15-64 (287)
319 PRK05693 short chain dehydroge 84.0 1.6 3.5E-05 37.8 4.5 31 1-31 13-43 (274)
320 COG3967 DltE Short-chain dehyd 83.9 1.5 3.3E-05 36.5 3.8 32 1-32 17-48 (245)
321 PLN02780 ketoreductase/ oxidor 83.7 1.2 2.6E-05 39.9 3.5 31 1-31 65-95 (320)
322 PRK10206 putative oxidoreducta 83.7 6.3 0.00014 35.7 8.2 82 13-103 27-113 (344)
323 PRK10538 malonic semialdehyde 83.6 2 4.3E-05 36.6 4.8 31 1-31 12-42 (248)
324 PF08546 ApbA_C: Ketopantoate 83.6 4.9 0.00011 30.3 6.5 85 180-276 37-123 (125)
325 PRK14874 aspartate-semialdehyd 83.4 0.96 2.1E-05 40.8 2.8 78 2-89 14-96 (334)
326 TIGR01851 argC_other N-acetyl- 83.4 2.4 5.1E-05 37.8 5.1 67 1-88 13-81 (310)
327 PRK02472 murD UDP-N-acetylmura 83.3 2.1 4.5E-05 40.2 5.2 54 1-54 16-76 (447)
328 TIGR01082 murC UDP-N-acetylmur 83.3 2.3 4.9E-05 40.1 5.4 52 2-53 11-65 (448)
329 PRK00421 murC UDP-N-acetylmura 83.0 2.4 5.2E-05 40.0 5.4 53 2-54 19-74 (461)
330 TIGR03215 ac_ald_DH_ac acetald 82.9 3.3 7.2E-05 36.5 5.8 80 1-90 12-98 (285)
331 PRK08339 short chain dehydroge 82.7 1.6 3.4E-05 37.7 3.8 30 1-30 20-49 (263)
332 PRK00066 ldh L-lactate dehydro 82.7 2.1 4.4E-05 38.4 4.6 56 1-56 17-83 (315)
333 PRK15057 UDP-glucose 6-dehydro 82.7 2.8 6E-05 38.7 5.6 57 3-64 319-375 (388)
334 PF13561 adh_short_C2: Enoyl-( 82.3 1.3 2.8E-05 37.7 3.0 26 1-26 8-33 (241)
335 PRK06101 short chain dehydroge 82.3 1.6 3.4E-05 37.1 3.6 32 1-32 13-44 (240)
336 PLN02662 cinnamyl-alcohol dehy 82.2 3.3 7.2E-05 36.7 5.8 55 1-55 16-85 (322)
337 PLN02650 dihydroflavonol-4-red 82.1 2.8 6.1E-05 37.8 5.4 55 1-55 17-86 (351)
338 PLN02520 bifunctional 3-dehydr 82.0 2.5 5.5E-05 40.7 5.2 56 1-56 390-449 (529)
339 PRK05653 fabG 3-ketoacyl-(acyl 82.0 2.5 5.4E-05 35.5 4.7 29 1-29 17-45 (246)
340 TIGR02356 adenyl_thiF thiazole 81.9 2.9 6.2E-05 34.8 4.9 30 1-30 32-62 (202)
341 cd05294 LDH-like_MDH_nadp A la 81.9 2.7 5.8E-05 37.5 5.0 56 1-57 12-83 (309)
342 PRK00141 murD UDP-N-acetylmura 81.7 2.7 5.9E-05 39.9 5.3 52 2-53 27-81 (473)
343 TIGR01081 mpl UDP-N-acetylmura 81.6 3 6.4E-05 39.3 5.5 51 3-53 13-67 (448)
344 PRK05875 short chain dehydroge 81.5 2.7 5.9E-05 36.3 4.9 30 1-30 19-48 (276)
345 PRK08862 short chain dehydroge 81.4 2 4.2E-05 36.4 3.8 31 1-31 17-47 (227)
346 PLN02686 cinnamoyl-CoA reducta 81.4 2.4 5.2E-05 38.7 4.7 29 1-29 65-93 (367)
347 PRK05884 short chain dehydroge 81.3 1.8 4E-05 36.3 3.6 31 1-31 12-42 (223)
348 PRK08265 short chain dehydroge 80.9 2 4.3E-05 37.0 3.8 31 1-31 18-48 (261)
349 TIGR03325 BphB_TodD cis-2,3-di 80.6 2 4.4E-05 36.9 3.8 31 1-31 17-47 (262)
350 PRK06200 2,3-dihydroxy-2,3-dih 80.6 2 4.3E-05 36.9 3.7 31 1-31 18-48 (263)
351 PLN02427 UDP-apiose/xylose syn 80.3 2.6 5.7E-05 38.6 4.6 54 1-54 26-94 (386)
352 PRK12749 quinate/shikimate deh 80.3 3.1 6.7E-05 36.7 4.8 56 2-57 136-207 (288)
353 cd01487 E1_ThiF_like E1_ThiF_l 80.3 4.5 9.7E-05 32.8 5.4 23 1-23 10-33 (174)
354 PLN02989 cinnamyl-alcohol dehy 80.3 3.4 7.4E-05 36.7 5.2 55 1-55 17-86 (325)
355 PRK07666 fabG 3-ketoacyl-(acyl 80.1 3.4 7.3E-05 34.8 4.9 29 1-29 19-47 (239)
356 PRK08340 glucose-1-dehydrogena 79.7 2.3 5E-05 36.4 3.8 30 1-30 12-41 (259)
357 PRK06482 short chain dehydroge 79.7 3.3 7.1E-05 35.9 4.8 31 1-31 14-44 (276)
358 TIGR01771 L-LDH-NAD L-lactate 79.7 2.6 5.6E-05 37.5 4.1 57 1-57 7-75 (299)
359 PRK05867 short chain dehydroge 79.7 2.2 4.8E-05 36.4 3.7 30 1-30 21-50 (253)
360 PRK07063 short chain dehydroge 79.5 2.4 5.2E-05 36.3 3.8 31 1-31 19-49 (260)
361 PLN02986 cinnamyl-alcohol dehy 79.5 4.1 9E-05 36.2 5.5 55 1-55 17-86 (322)
362 PRK08017 oxidoreductase; Provi 79.4 2.6 5.6E-05 35.9 4.0 31 1-31 14-44 (256)
363 COG0702 Predicted nucleoside-d 79.3 4.1 8.9E-05 34.9 5.3 54 1-55 12-72 (275)
364 PRK11064 wecC UDP-N-acetyl-D-m 79.3 4.1 8.8E-05 38.0 5.5 55 3-58 343-398 (415)
365 COG0451 WcaG Nucleoside-diphos 78.9 2.2 4.7E-05 37.5 3.5 56 1-56 12-74 (314)
366 PRK07478 short chain dehydroge 78.7 2.6 5.7E-05 35.9 3.8 30 1-30 18-47 (254)
367 PRK07024 short chain dehydroge 78.6 2.5 5.3E-05 36.2 3.6 31 1-31 14-44 (257)
368 PRK07890 short chain dehydroge 78.6 2.7 5.9E-05 35.8 3.9 30 1-30 17-46 (258)
369 PRK06180 short chain dehydroge 78.6 2.4 5.1E-05 36.9 3.5 31 1-31 16-46 (277)
370 PLN02214 cinnamoyl-CoA reducta 78.5 3.4 7.4E-05 37.3 4.6 55 1-55 22-90 (342)
371 PF04016 DUF364: Domain of unk 78.3 1.4 3E-05 34.7 1.8 50 4-55 22-71 (147)
372 PRK15076 alpha-galactosidase; 78.3 2.1 4.5E-05 40.2 3.2 46 12-57 29-86 (431)
373 PRK07231 fabG 3-ketoacyl-(acyl 78.0 3 6.4E-05 35.3 3.9 30 1-30 17-46 (251)
374 PRK05854 short chain dehydroge 77.9 2.6 5.7E-05 37.5 3.7 30 1-30 26-55 (313)
375 PRK12475 thiamine/molybdopteri 77.9 4.7 0.0001 36.5 5.3 29 1-29 35-64 (338)
376 PLN02657 3,8-divinyl protochlo 77.9 1.8 3.8E-05 40.0 2.6 55 1-55 72-145 (390)
377 PRK06349 homoserine dehydrogen 77.8 6.2 0.00014 36.9 6.3 57 1-57 14-83 (426)
378 PRK07067 sorbitol dehydrogenas 77.7 2.9 6.3E-05 35.7 3.8 31 1-31 18-48 (257)
379 PRK08085 gluconate 5-dehydroge 77.6 3 6.4E-05 35.6 3.8 30 1-30 21-50 (254)
380 PRK07326 short chain dehydroge 77.5 3.1 6.7E-05 34.9 3.9 30 1-30 18-47 (237)
381 PRK08945 putative oxoacyl-(acy 77.5 3 6.5E-05 35.4 3.8 30 1-30 24-53 (247)
382 PRK08267 short chain dehydroge 77.5 3 6.4E-05 35.7 3.8 31 1-31 13-43 (260)
383 PRK06720 hypothetical protein; 77.5 3.3 7.2E-05 33.4 3.8 28 1-28 28-55 (169)
384 PRK06179 short chain dehydroge 77.3 2 4.4E-05 37.0 2.7 26 1-26 16-41 (270)
385 PRK07814 short chain dehydroge 77.2 3.1 6.7E-05 35.8 3.8 30 1-30 22-51 (263)
386 TIGR01470 cysG_Nterm siroheme 77.2 17 0.00036 30.4 8.0 56 2-57 21-80 (205)
387 PRK07062 short chain dehydroge 77.1 3 6.6E-05 35.8 3.8 30 1-30 20-49 (265)
388 cd05293 LDH_1 A subgroup of L- 77.1 4.4 9.6E-05 36.2 4.9 55 1-56 14-81 (312)
389 PRK04207 glyceraldehyde-3-phos 77.0 6.6 0.00014 35.6 6.0 79 1-89 12-111 (341)
390 PRK07454 short chain dehydroge 77.0 3.1 6.8E-05 35.1 3.8 30 1-30 18-47 (241)
391 PRK07102 short chain dehydroge 77.0 3 6.4E-05 35.3 3.6 30 1-30 13-42 (243)
392 PRK06953 short chain dehydroge 76.9 3.5 7.6E-05 34.4 4.0 31 1-31 13-43 (222)
393 PF10100 DUF2338: Uncharacteri 76.8 64 0.0014 29.9 18.0 259 4-280 15-395 (429)
394 PRK08703 short chain dehydroge 76.7 3.3 7.2E-05 34.9 3.9 29 1-29 18-46 (239)
395 PRK09291 short chain dehydroge 76.7 4.4 9.6E-05 34.5 4.7 30 1-30 14-43 (257)
396 PRK03803 murD UDP-N-acetylmura 76.6 4.7 0.0001 37.9 5.2 52 2-53 18-75 (448)
397 PRK07523 gluconate 5-dehydroge 76.6 3.3 7.1E-05 35.3 3.8 29 1-29 22-50 (255)
398 PRK08277 D-mannonate oxidoredu 76.6 3 6.6E-05 36.1 3.7 30 1-30 22-51 (278)
399 PRK12429 3-hydroxybutyrate deh 76.6 3 6.6E-05 35.4 3.6 30 1-30 16-45 (258)
400 PF13450 NAD_binding_8: NAD(P) 76.6 3.2 6.9E-05 27.8 3.0 23 2-24 8-30 (68)
401 PRK06124 gluconate 5-dehydroge 76.5 3.3 7.1E-05 35.3 3.8 30 1-30 23-52 (256)
402 PRK05876 short chain dehydroge 76.3 3.5 7.5E-05 35.9 3.9 30 1-30 18-47 (275)
403 PF05222 AlaDh_PNT_N: Alanine 76.3 6.4 0.00014 30.5 5.0 96 5-125 19-118 (136)
404 PRK08300 acetaldehyde dehydrog 76.2 8.9 0.00019 34.0 6.4 80 1-90 15-104 (302)
405 PRK06914 short chain dehydroge 76.2 3.3 7.2E-05 35.9 3.8 30 1-30 15-44 (280)
406 PRK09072 short chain dehydroge 76.1 3.4 7.4E-05 35.5 3.8 30 1-30 17-46 (263)
407 PRK06194 hypothetical protein; 76.0 3.4 7.4E-05 36.0 3.8 30 1-30 18-47 (287)
408 PRK07074 short chain dehydroge 75.6 3.6 7.9E-05 35.1 3.8 31 1-31 14-44 (257)
409 PRK02006 murD UDP-N-acetylmura 75.5 5.3 0.00012 38.1 5.3 52 2-53 19-76 (498)
410 PRK06196 oxidoreductase; Provi 75.4 3.4 7.4E-05 36.7 3.7 30 1-30 38-67 (315)
411 TIGR01214 rmlD dTDP-4-dehydror 75.3 3.9 8.5E-05 35.5 4.0 47 1-55 11-59 (287)
412 KOG4230 C1-tetrahydrofolate sy 75.0 8.8 0.00019 36.9 6.3 40 37-88 196-235 (935)
413 PRK05872 short chain dehydroge 75.0 3.5 7.7E-05 36.3 3.7 31 1-31 21-51 (296)
414 PRK13394 3-hydroxybutyrate deh 74.8 3.6 7.8E-05 35.1 3.6 31 1-31 19-49 (262)
415 TIGR01296 asd_B aspartate-semi 74.7 1.7 3.7E-05 39.3 1.6 77 2-88 12-93 (339)
416 PRK09186 flagellin modificatio 74.6 4.1 8.8E-05 34.7 3.9 30 1-30 16-45 (256)
417 PRK08251 short chain dehydroge 74.5 3.8 8.1E-05 34.7 3.6 30 1-30 14-43 (248)
418 PRK07677 short chain dehydroge 74.5 4.1 9E-05 34.7 3.9 30 1-30 13-42 (252)
419 PRK06172 short chain dehydroge 74.5 4.1 9E-05 34.6 3.9 30 1-30 19-48 (253)
420 PF01073 3Beta_HSD: 3-beta hyd 74.4 3.4 7.5E-05 36.2 3.4 53 1-53 9-73 (280)
421 PRK05472 redox-sensing transcr 74.3 1.9 4.1E-05 36.2 1.7 56 2-58 96-158 (213)
422 PRK07060 short chain dehydroge 74.1 4.2 9.2E-05 34.2 3.8 31 1-31 21-51 (245)
423 PLN02896 cinnamyl-alcohol dehy 73.9 5.8 0.00012 35.8 4.9 29 1-29 22-50 (353)
424 KOG1200 Mitochondrial/plastidi 73.9 4.3 9.3E-05 33.6 3.5 31 1-31 26-56 (256)
425 PRK06139 short chain dehydroge 73.9 3.8 8.3E-05 36.9 3.7 30 1-30 19-48 (330)
426 PRK11908 NAD-dependent epimera 73.9 5.1 0.00011 36.1 4.5 53 1-53 13-75 (347)
427 TIGR03366 HpnZ_proposed putati 73.9 13 0.00027 32.4 6.9 34 2-35 133-167 (280)
428 COG0771 MurD UDP-N-acetylmuram 73.8 5.4 0.00012 37.5 4.6 52 2-53 19-76 (448)
429 PLN02253 xanthoxin dehydrogena 73.7 4.2 9.1E-05 35.2 3.8 30 1-30 30-59 (280)
430 PRK08309 short chain dehydroge 73.6 4.4 9.5E-05 32.9 3.6 31 1-31 11-41 (177)
431 PRK06057 short chain dehydroge 73.5 4.4 9.4E-05 34.6 3.8 30 1-30 19-48 (255)
432 PRK07774 short chain dehydroge 73.4 4.2 9.1E-05 34.4 3.7 29 1-29 18-46 (250)
433 PRK08213 gluconate 5-dehydroge 73.3 4.2 9.1E-05 34.8 3.6 30 1-30 24-53 (259)
434 PRK11863 N-acetyl-gamma-glutam 73.1 3.1 6.7E-05 37.2 2.8 68 2-89 15-83 (313)
435 PRK07453 protochlorophyllide o 73.0 4.1 9E-05 36.3 3.7 31 1-31 18-48 (322)
436 PRK07825 short chain dehydroge 72.9 4.3 9.4E-05 35.0 3.7 30 1-30 17-46 (273)
437 PRK06949 short chain dehydroge 72.8 4.4 9.5E-05 34.5 3.7 31 1-31 21-51 (258)
438 PRK08643 acetoin reductase; Va 72.7 4.9 0.00011 34.2 3.9 30 1-30 14-43 (256)
439 TIGR02622 CDP_4_6_dhtase CDP-g 72.6 4.3 9.4E-05 36.6 3.7 26 1-26 16-41 (349)
440 PRK12939 short chain dehydroge 72.5 4.8 0.0001 34.0 3.8 30 1-30 19-48 (250)
441 PRK12828 short chain dehydroge 72.4 5 0.00011 33.5 3.9 29 1-29 19-47 (239)
442 KOG0725 Reductases with broad 72.3 5 0.00011 35.0 3.9 31 1-31 20-50 (270)
443 PF03848 TehB: Tellurite resis 72.2 4.9 0.00011 33.2 3.5 26 6-31 45-70 (192)
444 PLN02583 cinnamoyl-CoA reducta 72.1 5.5 0.00012 35.1 4.2 23 1-23 18-40 (297)
445 KOG1209 1-Acyl dihydroxyaceton 72.1 5.2 0.00011 33.6 3.6 36 1-36 20-56 (289)
446 PRK12367 short chain dehydroge 72.1 5.6 0.00012 34.1 4.1 23 1-23 26-48 (245)
447 PRK06505 enoyl-(acyl carrier p 71.9 5 0.00011 34.8 3.8 24 1-24 21-44 (271)
448 PRK07109 short chain dehydroge 71.9 4.6 9.9E-05 36.4 3.7 30 1-30 20-49 (334)
449 PRK06125 short chain dehydroge 71.8 5.1 0.00011 34.3 3.8 29 1-29 19-47 (259)
450 PRK07424 bifunctional sterol d 71.7 6.8 0.00015 36.4 4.8 27 1-27 190-216 (406)
451 cd05290 LDH_3 A subgroup of L- 71.7 5.3 0.00011 35.6 3.9 56 1-56 10-78 (307)
452 PRK12826 3-ketoacyl-(acyl-carr 71.7 5.3 0.00012 33.7 3.9 29 1-29 18-46 (251)
453 KOG1370 S-adenosylhomocysteine 71.6 19 0.00041 32.0 7.1 55 1-56 225-279 (434)
454 COG0686 Ald Alanine dehydrogen 71.5 4.2 9.2E-05 36.1 3.1 82 2-87 180-268 (371)
455 PRK07041 short chain dehydroge 71.5 5.3 0.00012 33.3 3.8 30 1-30 9-38 (230)
456 PRK12829 short chain dehydroge 71.5 5.3 0.00012 34.1 3.9 31 1-31 23-53 (264)
457 PRK06138 short chain dehydroge 71.4 5.3 0.00012 33.8 3.8 30 1-30 17-46 (252)
458 TIGR01963 PHB_DH 3-hydroxybuty 71.3 5.3 0.00012 33.8 3.8 31 1-31 13-43 (255)
459 PRK07831 short chain dehydroge 71.3 5.4 0.00012 34.2 3.9 30 1-30 30-59 (262)
460 PRK12384 sorbitol-6-phosphate 71.2 5 0.00011 34.2 3.6 30 1-30 14-43 (259)
461 PRK08263 short chain dehydroge 71.1 5 0.00011 34.8 3.6 31 1-31 15-45 (275)
462 PRK07832 short chain dehydroge 70.9 5.4 0.00012 34.5 3.8 29 1-29 12-40 (272)
463 PRK06500 short chain dehydroge 70.9 5.6 0.00012 33.6 3.9 30 1-30 18-47 (249)
464 PRK10569 NAD(P)H-dependent FMN 70.9 18 0.0004 29.7 6.8 54 4-57 22-77 (191)
465 PRK06079 enoyl-(acyl carrier p 70.6 5.7 0.00012 33.9 3.9 23 1-23 21-43 (252)
466 cd01483 E1_enzyme_family Super 70.4 30 0.00066 26.6 7.7 104 1-125 10-124 (143)
467 PRK07069 short chain dehydroge 70.4 5.9 0.00013 33.5 3.9 29 1-29 11-40 (251)
468 TIGR03206 benzo_BadH 2-hydroxy 70.4 5.5 0.00012 33.7 3.7 30 1-30 15-44 (250)
469 COG0773 MurC UDP-N-acetylmuram 70.3 40 0.00087 31.8 9.4 52 3-54 21-74 (459)
470 PRK09242 tropinone reductase; 70.2 5.7 0.00012 33.9 3.8 30 1-30 21-50 (257)
471 PRK07035 short chain dehydroge 69.9 5.9 0.00013 33.6 3.8 30 1-30 20-49 (252)
472 PRK07097 gluconate 5-dehydroge 69.9 5.9 0.00013 34.0 3.8 30 1-30 22-51 (265)
473 TIGR03589 PseB UDP-N-acetylglu 69.8 7.7 0.00017 34.7 4.6 55 1-55 16-83 (324)
474 PRK05671 aspartate-semialdehyd 69.7 3.5 7.6E-05 37.3 2.4 78 2-90 17-100 (336)
475 PRK07576 short chain dehydroge 69.7 5.7 0.00012 34.2 3.7 29 1-29 21-49 (264)
476 PLN02350 phosphogluconate dehy 69.5 26 0.00057 33.5 8.3 109 169-280 327-446 (493)
477 PRK05717 oxidoreductase; Valid 69.4 6.2 0.00013 33.6 3.8 30 1-30 22-51 (255)
478 PRK05786 fabG 3-ketoacyl-(acyl 69.0 6.4 0.00014 33.0 3.8 29 1-29 17-45 (238)
479 PRK01438 murD UDP-N-acetylmura 68.7 8 0.00017 36.7 4.7 55 2-56 28-88 (480)
480 PRK07533 enoyl-(acyl carrier p 68.7 6.5 0.00014 33.7 3.8 25 1-25 24-48 (258)
481 TIGR01087 murD UDP-N-acetylmur 68.6 7.5 0.00016 36.3 4.5 53 2-54 11-70 (433)
482 PLN02695 GDP-D-mannose-3',5'-e 68.4 4.2 9.1E-05 37.2 2.7 55 1-55 33-94 (370)
483 PRK06197 short chain dehydroge 68.3 6.1 0.00013 34.8 3.7 29 1-29 28-56 (306)
484 PLN00198 anthocyanidin reducta 68.2 9.9 0.00022 34.0 5.0 25 1-25 21-45 (338)
485 PRK07904 short chain dehydroge 68.0 6.1 0.00013 33.9 3.5 29 1-29 20-50 (253)
486 PRK12769 putative oxidoreducta 67.8 12 0.00027 37.0 6.0 55 2-56 339-422 (654)
487 PRK08644 thiamine biosynthesis 67.8 10 0.00022 31.8 4.7 23 1-23 39-62 (212)
488 PRK08415 enoyl-(acyl carrier p 67.5 7.1 0.00015 34.0 3.8 23 1-23 19-41 (274)
489 PF01370 Epimerase: NAD depend 67.4 6.4 0.00014 32.8 3.5 26 1-26 10-35 (236)
490 cd02036 MinD Bacterial cell di 67.2 41 0.00089 26.6 8.1 53 3-56 18-72 (179)
491 PRK08217 fabG 3-ketoacyl-(acyl 67.0 7 0.00015 33.0 3.7 29 1-29 17-45 (253)
492 PRK08589 short chain dehydroge 67.0 7.2 0.00016 33.7 3.8 28 1-29 18-45 (272)
493 cd05298 GH4_GlvA_pagL_like Gly 67.0 6.1 0.00013 37.1 3.4 45 13-57 29-85 (437)
494 cd05197 GH4_glycoside_hydrolas 66.9 6.1 0.00013 37.0 3.4 46 13-58 29-86 (425)
495 PRK05650 short chain dehydroge 66.5 7.7 0.00017 33.4 3.9 30 1-30 12-41 (270)
496 PRK15181 Vi polysaccharide bio 66.5 7.4 0.00016 35.1 3.9 24 1-24 27-50 (348)
497 PLN00015 protochlorophyllide r 66.5 7.4 0.00016 34.5 3.8 30 1-30 9-39 (308)
498 PRK05565 fabG 3-ketoacyl-(acyl 66.4 7.9 0.00017 32.5 3.9 30 1-30 17-47 (247)
499 PRK09880 L-idonate 5-dehydroge 66.3 22 0.00047 31.9 6.9 34 2-35 182-216 (343)
500 KOG1201 Hydroxysteroid 17-beta 66.3 6.8 0.00015 34.5 3.3 28 1-28 50-77 (300)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=2.4e-60 Score=408.57 Aligned_cols=275 Identities=40% Similarity=0.640 Sum_probs=261.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.+||.||.++||+|++|||++++ .+.+.+.|+..+.++.|+++.+|+||+|||++.+ +++|+++.++++++ ..+
T Consensus 11 MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~-V~~V~~g~~g~~~~--~~~ 87 (286)
T COG2084 11 MGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAA-VRAVLFGENGLLEG--LKP 87 (286)
T ss_pred hhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHH-HHHHHhCccchhhc--CCC
Confidence 9999999999999999999999999 6666777999999999999999999999999998 99999998899876 467
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCC
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 159 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~ 159 (301)
|+++|||||++|.+++++++.+.+. +..|+|+||+|++..+..|++++|+||+++.|++++|+|+.++++
T Consensus 88 G~i~IDmSTisp~~a~~~a~~~~~~----------G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 88 GAIVIDMSTISPETARELAAALAAK----------GLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKN 157 (286)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhc----------CCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCc
Confidence 8999999999999999999999762 389999999999999999999999999999999999999999999
Q ss_pred eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCC
Q 022170 160 TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239 (301)
Q Consensus 160 ~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (301)
++|+|+.|.++.+|++||++.++++.+++|++.|++++|+|++.++++++.+++.||.++++.+ ++++++|++
T Consensus 158 i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~-------~m~~~~~~p 230 (286)
T COG2084 158 IVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP-------RMLEGDFSP 230 (286)
T ss_pred eEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcc-------hhhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999887753 467899999
Q ss_pred CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHh
Q 022170 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 295 (301)
Q Consensus 240 ~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 295 (301)
+|.++++.||++++.+++++.++++|+...+.++|+.+.++|+|++|++++++.|+
T Consensus 231 ~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 231 GFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999874
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=1.1e-57 Score=384.29 Aligned_cols=281 Identities=47% Similarity=0.707 Sum_probs=262.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+|+.+|.++||+|++|||+.++.+.+.+.|++++.||.|+++.||+||+|||++.+ +++++.+..+++++. .+.+
T Consensus 46 MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~-v~~v~~g~~Gvl~g~-~~g~ 123 (327)
T KOG0409|consen 46 MGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKD-VKDVLLGKSGVLSGI-RPGK 123 (327)
T ss_pred chHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHh-hHHHhcCCCcceeec-cCCC
Confidence 89999999999999999999999999999999999999999999999999999999998 999999999999863 2333
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+..||+||++|.+++++++.+..+ +.+|+|+||+|+...+++|+|+||+|||++.++.+.++|+.+++++
T Consensus 124 ~~~vDmSTidp~~s~ei~~~i~~~----------~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~ 193 (327)
T KOG0409|consen 124 KATVDMSTIDPDTSLEIAKAISNK----------GGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNV 193 (327)
T ss_pred ceEEeccccCHHHHHHHHHHHHhC----------CCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceE
Confidence 444999999999999999998752 3799999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|..|+++++|+++|++.+..+.+++|++.|++++|+|+.+++++++.|.+.|+ ..++|+|+++ .++|.++
T Consensus 194 ~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~--~~~~~~p~m~-----k~dy~p~ 266 (327)
T KOG0409|consen 194 VFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSS--MFYNPVPGML-----KGDYNPG 266 (327)
T ss_pred EEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccH--HHhCcCchhh-----cCCCCCc
Confidence 99999999999999999999999999999999999999999999999999765555 4567777655 5799999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCCCCC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 300 (301)
|.++++.||++++.+.+.+.+.|+|+...+.|+|+...+.|+|+.|+++||+.+++.++.
T Consensus 267 f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 267 FALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred chHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999987765
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.6e-51 Score=362.38 Aligned_cols=276 Identities=33% Similarity=0.500 Sum_probs=254.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||++|.++||+|++|||++. .+.+.+.|+..+.++.++++++|+||+|||++.+ +++++.+..++++. ..++
T Consensus 11 MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~-v~~v~~~~~g~~~~--~~~g 86 (292)
T PRK15059 11 MGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQ-VEEVLFGENGCTKA--SLKG 86 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHH-HHHHHcCCcchhcc--CCCC
Confidence 899999999999999999999985 5777778888889999999999999999999887 99999876666654 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|.+++++++.+.+. ++.|+|+|++|++..++.|++++++||+++.+++++|+|+.+++++
T Consensus 87 ~ivvd~sT~~p~~~~~~~~~~~~~----------G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~ 156 (292)
T PRK15059 87 KTIVDMSSISPIETKRFARQVNEL----------GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNI 156 (292)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHc----------CCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCc
Confidence 899999999999999999998752 3789999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+|+|+.|+|+.+|+++|++.+.++.+++|++.+++++|+|+++++++++.+++.||.++.+.+ ++.+++|+++
T Consensus 157 ~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~ 229 (292)
T PRK15059 157 TLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGE-------RMIKRTFNPG 229 (292)
T ss_pred EEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhch-------hhhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999988888888765543 3567899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 297 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 297 (301)
|+++++.||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++++++.
T Consensus 230 f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~ 286 (292)
T PRK15059 230 FKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELM 286 (292)
T ss_pred CchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988763
No 4
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=3.4e-51 Score=361.04 Aligned_cols=281 Identities=48% Similarity=0.800 Sum_probs=258.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||++|.++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|||++.+ +++++.+.+++.+. ..++
T Consensus 7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~-~~~v~~g~~~l~~~--~~~g 83 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQH-VISVYSGDEGILPK--VAKG 83 (288)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHH-HHHHHcCcchHhhc--CCCC
Confidence 89999999999999999999999999999999998888999999999999999998777 89998765566654 3467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|++++++++.+.+. ++.|+|+|++|++..+..|++++|+||+++.+++++++|+.+++++
T Consensus 84 ~~vid~st~~p~~~~~~~~~~~~~----------g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~ 153 (288)
T TIGR01692 84 SLLIDCSTIDPDSARKLAELAAAH----------GAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNI 153 (288)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHc----------CCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCe
Confidence 899999999999999999988752 3789999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+.|.++++|+++|++.+.++.+++|++.+++++|+|+++++++++.+++.+|....+.+.+++....+.+++|+++
T Consensus 154 ~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
T TIGR01692 154 VHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGG 233 (288)
T ss_pred EeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988888777666655555444567899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHH
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 294 (301)
|++..+.||++++.+++++.|+++|+.+.+.++|+++.++|+|++|++++++++
T Consensus 234 f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 234 FGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred cchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999976
No 5
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=8.8e-50 Score=352.86 Aligned_cols=277 Identities=30% Similarity=0.453 Sum_probs=252.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|++.+ +++++.+..++++. ..++
T Consensus 12 mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~-~~~vl~~~~~i~~~--l~~g 88 (296)
T PRK15461 12 MGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDL-VRSVLFGENGVCEG--LSRD 88 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHH-HHHHHcCcccHhhc--CCCC
Confidence 89999999999999999999999999999999998889999999999999999998877 89998876677654 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|.+++++.+.+.+. ++.|+|+|++|++..+..|++++++||+++.+++++++|+.++.++
T Consensus 89 ~lvid~sT~~p~~~~~l~~~l~~~----------g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~ 158 (296)
T PRK15461 89 ALVIDMSTIHPLQTDKLIADMQAK----------GFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNEL 158 (296)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHc----------CCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCe
Confidence 899999999999999999998752 3789999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+.|.|+.+|+++|++...++.+++|++.+++++|+|++.+++++..+...++.+... .+ ..+.+++|+++
T Consensus 159 ~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~--~~----~~~~~~~~~~~ 232 (296)
T PRK15461 159 INAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTT--WP----NKVLKGDLSPA 232 (296)
T ss_pred EeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHcc--cc----chhccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999876555543322 11 13567899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
|+++.+.||++++.+++++.|+++|+.+.+.++|+.+.++|+|++||+++++++++
T Consensus 233 f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 233 FMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred cchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998865
No 6
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.8e-47 Score=390.64 Aligned_cols=278 Identities=22% Similarity=0.389 Sum_probs=258.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++++.+.+.|+..++|+.|++++||+||+|||++.+ +++|+++..+++++ ..+|
T Consensus 15 MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~-v~~V~~g~~g~~~~--l~~g 91 (1378)
T PLN02858 15 LSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQ-VDDVFFGDEGAAKG--LQKG 91 (1378)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHH-HHHHHhchhhHHhc--CCCc
Confidence 89999999999999999999999999999999999999999999999999999999988 99999887777765 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++|||||++|.+++++++.+.+. + .++.|+|+||+|++..++.|++++|+||+++.+++++|+|+.++.++
T Consensus 92 ~iivd~STi~p~~~~~la~~l~~~-----g---~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 163 (1378)
T PLN02858 92 AVILIRSTILPLQLQKLEKKLTER-----K---EQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKL 163 (1378)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhc-----C---CceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCce
Confidence 899999999999999999998752 1 01689999999999999999999999999999999999999999998
Q ss_pred Eee-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCC
Q 022170 161 IYC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239 (301)
Q Consensus 161 ~~~-g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (301)
+++ |+.|+|+.+|+++|++.+.++.+++|++.+++++|+|++.++++++.+++.||.+.++.+ .+++++|.+
T Consensus 164 ~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~-------~~~~~d~~~ 236 (1378)
T PLN02858 164 YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVP-------LLLKDDYIE 236 (1378)
T ss_pred EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhh-------HhhcCCCCC
Confidence 865 999999999999999999999999999999999999999999999999999988765532 356789999
Q ss_pred CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 240 ~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
+|+++++.||++++.+++++.|+++|+++.+.++|+.+.+.|+|+.|++++++++++
T Consensus 237 ~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 237 GRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998864
No 7
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=1.7e-46 Score=331.98 Aligned_cols=277 Identities=36% Similarity=0.546 Sum_probs=252.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|++.. +++++....++++. ..++
T Consensus 10 mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~-~~~v~~~~~~~~~~--~~~g 86 (291)
T TIGR01505 10 MGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQ-VEEVAFGENGIIEG--AKPG 86 (291)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHH-HHHHHcCcchHhhc--CCCC
Confidence 89999999999999999999999999999999988888999999999999999998877 88887654445543 3467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|.+++++.+.+.+ . +++|+++|++|++..+..+++.+++||+++++++++++|+.++.++
T Consensus 87 ~iivd~st~~~~~~~~l~~~l~~------~----g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~ 156 (291)
T TIGR01505 87 KTLVDMSSISPIESKRFAKAVKE------K----GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNI 156 (291)
T ss_pred CEEEECCCCCHHHHHHHHHHHHH------c----CCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCe
Confidence 89999999999999999998875 2 3799999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+.|.++.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+.+.++.+..+.+ ++.+++|.++
T Consensus 157 ~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~ 229 (291)
T TIGR01505 157 VLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGE-------RVIDRTFKPG 229 (291)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhCh-------hhhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999988877776554322 3457899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 297 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 297 (301)
|+++++.||+.++.+++++.|+++|+++++.++|+.+.++|+|++|++++++++++.
T Consensus 230 f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~ 286 (291)
T TIGR01505 230 FRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELL 286 (291)
T ss_pred cchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998764
No 8
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.5e-45 Score=326.90 Aligned_cols=276 Identities=36% Similarity=0.511 Sum_probs=251.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|.+|++.||+|++|||++++.+.+.+.|+..++++.++++++|+||+|+|++.. ++.++...+++++. ..++
T Consensus 13 mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~-~~~v~~~~~~~~~~--~~~g 89 (296)
T PRK11559 13 MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPH-VKEVALGENGIIEG--AKPG 89 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHH-HHHHHcCcchHhhc--CCCC
Confidence 79999999999999999999999999999888888888999999999999999998877 88888654445543 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
++++|+||++|.+++++.+.+.+ . +++|+++|+++++..+..+++.+++||+++.+++++++|+.++.++
T Consensus 90 ~iiid~st~~~~~~~~l~~~~~~------~----g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~ 159 (296)
T PRK11559 90 TVVIDMSSIAPLASREIAAALKA------K----GIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 159 (296)
T ss_pred cEEEECCCCCHHHHHHHHHHHHH------c----CCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCe
Confidence 89999999999999999998865 2 3789999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+.|+|+.+|+++|++.+.++.+++|++.++++.|+|++++++++..+.+.|+.+..+.+ ++..++|.++
T Consensus 160 ~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~d~~~~ 232 (296)
T PRK11559 160 VHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKPG 232 (296)
T ss_pred EEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhch-------HhhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999988877777654433 2456899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
|++++..||++++.+++++.|+++|+++.+++.|+.+.+.|+|+.||+++++++.+
T Consensus 233 f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (296)
T PRK11559 233 FRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEK 288 (296)
T ss_pred cchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998865
No 9
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=7.7e-45 Score=371.42 Aligned_cols=278 Identities=26% Similarity=0.410 Sum_probs=255.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++.+.+.+.|+..+.++.+++++||+||+|||++.+ +++|+.+..++++. ..+|
T Consensus 335 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~-v~~Vl~g~~g~~~~--l~~g 411 (1378)
T PLN02858 335 MGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQ-AENVLFGDLGAVSA--LPAG 411 (1378)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHH-HHHHHhchhhHHhc--CCCC
Confidence 89999999999999999999999999999999988889999999999999999999888 99999876677764 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++|||||++|.+++++++.+.+. .. ++.|+|+|++|++..+..|++++|+||+++.+++++++|+.++.++
T Consensus 412 ~ivVd~STvsP~~~~~la~~l~~~----g~----g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i 483 (1378)
T PLN02858 412 ASIVLSSTVSPGFVIQLERRLENE----GR----DIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKL 483 (1378)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhh----CC----CcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcE
Confidence 899999999999999999988641 02 4899999999999999999999999999999999999999999999
Q ss_pred Eee-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCC
Q 022170 161 IYC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239 (301)
Q Consensus 161 ~~~-g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (301)
+++ |++|+|+++|+++|++.+.++++++|++.+++++|+|+++++++++.+++.||.+..+.| .+++++|++
T Consensus 484 ~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~-------~~l~~d~~~ 556 (1378)
T PLN02858 484 YVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVP-------HMLDNDYTP 556 (1378)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccc-------hhhcCCCCC
Confidence 885 679999999999999999999999999999999999999999999999888887765433 356789999
Q ss_pred CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 240 ~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
+|+++.+.||++++.+++++.|+++|+++.+.++|+.+.++|+|+.|++++++++++
T Consensus 557 ~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 557 YSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998864
No 10
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=1.2e-41 Score=315.15 Aligned_cols=255 Identities=20% Similarity=0.254 Sum_probs=223.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCC---CCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVP---TKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~---~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
||.+||+||+++||+|++|||++++++.+.+. |+. .+.|++|+++. +|+||+|||++.+ +++|+. +
T Consensus 17 MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a-V~~Vi~---g 92 (493)
T PLN02350 17 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP-VDQTIK---A 92 (493)
T ss_pred HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH-HHHHHH---H
Confidence 99999999999999999999999999998764 544 67899999986 9999999999988 999984 3
Q ss_pred cccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHH
Q 022170 71 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 150 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~ 150 (301)
+++. ..+|.++||+||++|.+++++++.+.+ . +++|+++||+|++..++.|+ ++|+|||++++++++
T Consensus 93 l~~~--l~~G~iiID~sT~~~~~t~~~~~~l~~------~----Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~ 159 (493)
T PLN02350 93 LSEY--MEPGDCIIDGGNEWYENTERRIKEAAE------K----GLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIE 159 (493)
T ss_pred HHhh--cCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHH
Confidence 5544 346789999999999999999998875 2 38999999999999999999 999999999999999
Q ss_pred HHHHhcCC------CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCCcccccc
Q 022170 151 PLFLSMGK------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKI---LNSSSARCWSSDS 220 (301)
Q Consensus 151 ~ll~~~~~------~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~---~~~~~~~~~~~~~ 220 (301)
|+|+.++. .++|+|+.|+|+.+|+++|.+.+..+++++|++.++++ .|+|++++.++ ++.+.+.|++.+.
T Consensus 160 pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei 239 (493)
T PLN02350 160 DILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEI 239 (493)
T ss_pred HHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHH
Confidence 99999995 48999999999999999999999999999999999999 59999999998 6677778887665
Q ss_pred CCCCCCcccCCCCCC-CCCCCcchhhHHHHHH------HHHHHHHHcCCCchH-HHHHHHHHHHHHH
Q 022170 221 YNPVPGVMEGVPASR-NYGGGFASKLMAKDLN------LALASAKEVGVDCPL-TSQAQDIYAKLCE 279 (301)
Q Consensus 221 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~-~~~~~~~~~~a~~ 279 (301)
..+ .+..+ +|.++|.++.+.||+. +..+.+.+.|+|+|+ .+++.+.|.+..+
T Consensus 240 ~~~-------~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 240 TAD-------IFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred HHH-------HHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 432 12233 4777899999999999 899999999999999 7777777776644
No 11
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=8.1e-42 Score=302.62 Aligned_cols=270 Identities=20% Similarity=0.273 Sum_probs=237.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+||.+|.++||+|++|||++++.+.+.+.|+..+.++++++++ +|+||+|+|++.. +++++.+ +.+. .
T Consensus 11 mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~-~~~v~~~---i~~~--l 84 (299)
T PRK12490 11 MGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEV-TESVIKD---LYPL--L 84 (299)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchH-HHHHHHH---Hhcc--C
Confidence 8999999999999999999999999999988898888999999876 6999999998866 8898854 3332 2
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcC
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 157 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~ 157 (301)
.+++++||+||++|.+++++++.+.+ . ++.|+|+||+|++..+..|+ ++++||+++++++++++|+.++
T Consensus 85 ~~g~ivid~st~~~~~~~~~~~~~~~------~----g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 85 SPGDIVVDGGNSRYKDDLRRAEELAE------R----GIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred CCCCEEEECCCCCchhHHHHHHHHHH------c----CCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999998865 2 37999999999999999998 8999999999999999999999
Q ss_pred C---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcC-CCccccccCCCCCCcccCC
Q 022170 158 K---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV 231 (301)
Q Consensus 158 ~---~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 231 (301)
. +++|+|++|.|+.+|+++|++.+.++.+++|++.++++.| +|+++++++++.++ +.|+.++.+.+ .
T Consensus 154 ~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~--~----- 226 (299)
T PRK12490 154 PEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVK--A----- 226 (299)
T ss_pred CcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHH--H-----
Confidence 7 7899999999999999999999999999999999999999 99999999999654 77777654432 1
Q ss_pred CCCCCCCCCcchhhHHHHH---HHHHHHHHHcCCCchHHHHHH-HHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 232 PASRNYGGGFASKLMAKDL---NLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 232 ~~~~~~~~~~~~~~~~kd~---~~~~~~a~~~g~~~p~~~~~~-~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
+.++++ .+.++...||+ +++++.+++.|+|+|++..+. .++....++|.|..|++++.+++-.
T Consensus 227 ~~~~~~--~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~ 293 (299)
T PRK12490 227 LAEDPK--LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGG 293 (299)
T ss_pred HhhCCC--hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCC
Confidence 223332 35789999998 799999999999999999996 8999999999999999999987743
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=4e-39 Score=285.81 Aligned_cols=267 Identities=18% Similarity=0.259 Sum_probs=229.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+||++|+++||+|++|||++++.+.+.+.|+..+++++++++. +|+||+|+|++.. +++++.+ +.+. .
T Consensus 11 MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~-~~~v~~~---l~~~--l 84 (301)
T PRK09599 11 MGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEI-TDATIDE---LAPL--L 84 (301)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcH-HHHHHHH---HHhh--C
Confidence 8999999999999999999999999999999999999999998875 6999999998766 8888754 3332 2
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcC
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 157 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~ 157 (301)
.++.++||+||++|.+++++++.+.+. ++.|+|+|++|++..++.|. ++|+||+++++++++++|+.++
T Consensus 85 ~~g~ivid~st~~~~~~~~~~~~~~~~----------g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 85 SPGDIVIDGGNSYYKDDIRRAELLAEK----------GIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred CCCCEEEeCCCCChhHHHHHHHHHHHc----------CCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHc
Confidence 356899999999999999999888752 38999999999999999996 8999999999999999999999
Q ss_pred C----CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcC-CCccccccCCCCCCcccC
Q 022170 158 K----NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS--LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEG 230 (301)
Q Consensus 158 ~----~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~--~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 230 (301)
. +++|+|+.|+|+.+|+++|++.+..+..++|++.++++ .|+|+++++++++.++ ..|+.+....+ .
T Consensus 154 ~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~---~--- 227 (301)
T PRK09599 154 PRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTAD---A--- 227 (301)
T ss_pred ccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHH---H---
Confidence 8 89999999999999999999999999999999999999 9999999999999875 57776654322 1
Q ss_pred CCCCCCCCCCcc-hhhHHHH---HHHHHHHHHHcCCCchHHHHHH-HHHHHHHHCCCCCCchHHHHHHH
Q 022170 231 VPASRNYGGGFA-SKLMAKD---LNLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHY 294 (301)
Q Consensus 231 ~~~~~~~~~~~~-~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~-~~~~~a~~~g~g~~d~~~~~~~~ 294 (301)
+.++ +.|. +....|| ++++.+.+.+.++++|.+.++. ..|....+.|+|+.|.+++.++|
T Consensus 228 --~~~~--~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 228 --LAED--PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred --HhcC--CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence 1222 2232 3334555 5889999999999999999955 46889999999999999998876
No 13
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=2e-36 Score=279.21 Aligned_cols=246 Identities=22% Similarity=0.289 Sum_probs=206.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCCCCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||.+||+||+++||+|.+|||++++++.+.+. |+..+.|++++++. +|+||+|||++.+ +++|+.+ ++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~-v~~Vi~~---l~ 76 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAP-VDAVIEQ---LL 76 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchH-HHHHHHH---HH
Confidence 99999999999999999999999999999874 48888999999875 8999999999988 9999854 45
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 152 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 152 (301)
+. ..+|.++||+||+.|..++++.+.+.+ . +++|+++||+|++..++.|. ++|+||+++++++++|+
T Consensus 77 ~~--l~~GdiiID~gn~~~~~t~~~~~~l~~------~----Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~pi 143 (459)
T PRK09287 77 PL--LEKGDIIIDGGNSNYKDTIRREKELAE------K----GIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPI 143 (459)
T ss_pred hc--CCCCCEEEECCCCCHHHHHHHHHHHHh------c----CCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHH
Confidence 43 246789999999999999999988865 2 38999999999999999998 99999999999999999
Q ss_pred HHhcCCCe-------EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCccccccC
Q 022170 153 FLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSY 221 (301)
Q Consensus 153 l~~~~~~~-------~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~-~~G~~~~~~~~~~---~~~~~~~~~~~~~ 221 (301)
|+.++.++ +|+|+.|+|+.+||++|.+.+..+++++|++.+++ +.|++++++.+++ +.+...||+.+..
T Consensus 144 L~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~ 223 (459)
T PRK09287 144 LEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEIT 223 (459)
T ss_pred HHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhH
Confidence 99999886 89999999999999999999999999999999999 5899999998888 5777788877654
Q ss_pred CCCCCcccCCCCCCCCCCCc-chhhHH-----H-HHHHHHHHHHHcCCCchHHHHH
Q 022170 222 NPVPGVMEGVPASRNYGGGF-ASKLMA-----K-DLNLALASAKEVGVDCPLTSQA 270 (301)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-----k-d~~~~~~~a~~~g~~~p~~~~~ 270 (301)
.+ .+..+||..+. -++... | .-+.....|-++|+|.|.+...
T Consensus 224 ~~-------~l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~A 272 (459)
T PRK09287 224 AD-------ILRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEA 272 (459)
T ss_pred hH-------HHhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHH
Confidence 32 12344553222 222221 1 2246777888889999887764
No 14
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=1.2e-33 Score=250.22 Aligned_cols=246 Identities=22% Similarity=0.326 Sum_probs=207.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHH---hcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA---EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~---~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+||.+|.++||+|.+|||++++++.+.+.|+..+.++.+++ ..+|+||+|+|++ . +++++.+..+.+
T Consensus 11 mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~-~~~v~~~l~~~l----- 83 (298)
T TIGR00872 11 MGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-I-VDAVLEELAPTL----- 83 (298)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-H-HHHHHHHHHhhC-----
Confidence 89999999999999999999999999999998887778887765 4589999999987 6 899986533322
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcC
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 157 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~ 157 (301)
.+++++||+||..|.++.++.+.+.+ . +++|+++|++|++..++.| +.+++||+++.+++++++|+.++
T Consensus 84 ~~g~ivid~st~~~~~t~~~~~~~~~------~----g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 84 EKGDIVIDGGNSYYKDSLRRYKLLKE------K----GIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred CCCCEEEECCCCCcccHHHHHHHHHh------c----CCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhc
Confidence 35689999999999999999888765 2 3799999999999999999 59999999999999999999998
Q ss_pred C---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CCccccccCCCCCCcccCC
Q 022170 158 K---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV 231 (301)
Q Consensus 158 ~---~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~--G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 231 (301)
. .++|+|+.|+++.+|+++|.+.+..+..++|++.++++. |+|++++.++++.++ ..||+++...+ .+
T Consensus 153 ~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~---~~--- 226 (298)
T TIGR00872 153 PEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAI---AF--- 226 (298)
T ss_pred CcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHH---HH---
Confidence 6 589999999999999999999999999999999999998 569999999999886 57777654322 11
Q ss_pred CCCCCCCCCcchh-hHHHHHHHHHHHHHHcCCCchHHHHHH
Q 022170 232 PASRNYGGGFASK-LMAKDLNLALASAKEVGVDCPLTSQAQ 271 (301)
Q Consensus 232 ~~~~~~~~~~~~~-~~~kd~~~~~~~a~~~g~~~p~~~~~~ 271 (301)
..+++-+.|... ...+|.+.+...+.+.|+|+|.+.+..
T Consensus 227 -~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al 266 (298)
T TIGR00872 227 -RESPDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSL 266 (298)
T ss_pred -hcCCcHHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHH
Confidence 122222334433 356788999999999999999999954
No 15
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-33 Score=259.26 Aligned_cols=252 Identities=20% Similarity=0.257 Sum_probs=203.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHHh---cCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAE---ASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~---~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||++||.+|+++||+|++|||++++++.+.+. | +..+.+++++++ ++|+||+|||++.. +++++.+..+.
T Consensus 12 MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~-v~~vi~~l~~~ 90 (470)
T PTZ00142 12 MGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA-VDETIDNLLPL 90 (470)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH-HHHHHHHHHhh
Confidence 89999999999999999999999999988764 5 346789999987 48999999998887 99998653333
Q ss_pred ccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHH
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 151 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ 151 (301)
+ .++.+|||+||..|..++++.+.+.+ . +++|+++||+|++..++.|+ ++|+||+++++++++|
T Consensus 91 L-----~~g~iIID~gn~~~~dt~~r~~~l~~------~----Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~p 154 (470)
T PTZ00142 91 L-----EKGDIIIDGGNEWYLNTERRIKRCEE------K----GILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKD 154 (470)
T ss_pred C-----CCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHH
Confidence 2 46789999999999999999988875 2 38999999999999999999 8999999999999999
Q ss_pred HHHhcCCC------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCccccccC
Q 022170 152 LFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSY 221 (301)
Q Consensus 152 ll~~~~~~------~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~-~~G~~~~~~~~~~---~~~~~~~~~~~~~ 221 (301)
+|+.++.+ ++|+|+.|+|+.+||++|.+.+..+++++|++.|++ +.|+|++++.+++ +.+...||+.+..
T Consensus 155 iL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~ 234 (470)
T PTZ00142 155 ILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEIT 234 (470)
T ss_pred HHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHH
Confidence 99999987 899999999999999999999999999999999998 7999999998887 5777777776543
Q ss_pred CCCCCcccCCCCCCCCCC-CcchhhHH------HHHHHHHHHHHHcCCCchHHHHHH-HHHHH
Q 022170 222 NPVPGVMEGVPASRNYGG-GFASKLMA------KDLNLALASAKEVGVDCPLTSQAQ-DIYAK 276 (301)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~-~~~~~~~~------kd~~~~~~~a~~~g~~~p~~~~~~-~~~~~ 276 (301)
... +. ..|-.+ ++-++... -.=+.....|-++|+|.|.+.++. ..+.+
T Consensus 235 ~~~---~~----~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S 290 (470)
T PTZ00142 235 AKI---LA----KKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNIS 290 (470)
T ss_pred HHH---hh----cccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhh
Confidence 211 10 000000 11122111 122467778889999999887764 34433
No 16
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=9.3e-33 Score=256.00 Aligned_cols=247 Identities=19% Similarity=0.271 Sum_probs=199.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCCCCCCHHHHHh---cCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAE---ASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~~---~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||.+||++|+++||+|++|||++++++.+.+. ++..+.+++++++ .+|+||+|||++.. +++++.+ ++
T Consensus 10 MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~-v~~Vi~~---l~ 85 (467)
T TIGR00873 10 MGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP-VDAVINQ---LL 85 (467)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHH-HHHHHHH---HH
Confidence 89999999999999999999999999999876 2556778888774 68999999998777 8999854 33
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 152 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 152 (301)
+. ..++.+|||+||+.|.++.+..+.+.+ . +++|+++||+|++..++.|. ++|+||+++++++++|+
T Consensus 86 ~~--L~~g~iIID~gns~~~~t~~~~~~l~~------~----gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~ 152 (467)
T TIGR00873 86 PL--LEKGDIIIDGGNSHYPDTERRYKELKA------K----GILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPI 152 (467)
T ss_pred hh--CCCCCEEEECCCcCHHHHHHHHHHHHh------c----CCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHH
Confidence 32 246789999999999999888887764 2 38999999999999999998 99999999999999999
Q ss_pred HHhcCCC------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCccccccCC
Q 022170 153 FLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYN 222 (301)
Q Consensus 153 l~~~~~~------~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~-~~G~~~~~~~~~~---~~~~~~~~~~~~~~ 222 (301)
|+.++.+ ++|+|+.|+|+.+|+++|.+.+.++++++|++.|++ +.|+|++++.+++ +.+...||+.+...
T Consensus 153 L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~ 232 (467)
T TIGR00873 153 FQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITA 232 (467)
T ss_pred HHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHH
Confidence 9999986 489999999999999999999999999999999985 7999999999998 56777788776443
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHH------HHHHHHHHHHHHcCCCchHHHHHH
Q 022170 223 PVPGVMEGVPASRNYGGGFASKLMA------KDLNLALASAKEVGVDCPLTSQAQ 271 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~------kd~~~~~~~a~~~g~~~p~~~~~~ 271 (301)
+. +. .+|-+..+-++... -.-+.....|-++|+|.|.+.+..
T Consensus 233 ~~--~~-----~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av 280 (467)
T TIGR00873 233 DI--LK-----KKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESV 280 (467)
T ss_pred HH--Hh-----ccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHH
Confidence 21 11 11111111111111 122467778888999999887653
No 17
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=100.00 E-value=6.8e-32 Score=249.32 Aligned_cols=247 Identities=16% Similarity=0.189 Sum_probs=197.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-------------------CC-CCCCCCHHHHHhcCCEEEEecCCCcc-
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDVVITMLPSSSH- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~e~~~~adiVi~~vp~~~~- 59 (301)
||.++|.+|+++||+|++||+++++++.+++ .| ++.++++.++++++|+||+|||++..
T Consensus 11 ~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvii~vpt~~~~ 90 (411)
T TIGR03026 11 VGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVIIICVPTPLKE 90 (411)
T ss_pred hhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEEEEeCCCCCC
Confidence 8999999999999999999999999988764 13 45667888889999999999998742
Q ss_pred -------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhc
Q 022170 60 -------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 132 (301)
Q Consensus 60 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~ 132 (301)
++.+++. .+.+. ..+++++|++||++|++++++.+.+.+. ..|. ..+.+.|+.++|..+..
T Consensus 91 ~~~~d~~~v~~~~~---~i~~~--l~~g~lvi~~STv~pgt~~~l~~~~~~~----~~g~---~~~~d~~v~~~Pe~~~~ 158 (411)
T TIGR03026 91 DGSPDLSYVESAAE---TIAKH--LRKGATVVLESTVPPGTTEEVVKPILER----ASGL---KLGEDFYLAYNPEFLRE 158 (411)
T ss_pred CCCcChHHHHHHHH---HHHHh--cCCCCEEEEeCcCCCCchHHHHHHHHHh----hcCC---CCCCCceEEECCCcCCC
Confidence 1444443 33332 2457899999999999999997665431 0110 01345555555555556
Q ss_pred cce--------EEEecCCHHHHHHHHHHHHhcC-CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022170 133 GTL--------TFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 203 (301)
Q Consensus 133 g~l--------~~~~gg~~~~~~~~~~ll~~~~-~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~ 203 (301)
|++ .+++|++++.+++++++|+.++ ..++++++++.|+++|+++|++.++++++++|+..+|++.|+|+++
T Consensus 159 G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~~ 238 (411)
T TIGR03026 159 GNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVYE 238 (411)
T ss_pred CChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 665 7899999999999999999998 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022170 204 LTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 277 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 277 (301)
++++++.+. ++..++|.++ |...++.||+.++.+.+++.|+++|+++++.++.+.-
T Consensus 239 v~~~~~~~~------------------~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~ 296 (411)
T TIGR03026 239 VIEAAGTDP------------------RIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQ 296 (411)
T ss_pred HHHHhCCCC------------------CCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999998652 1122445554 5678899999999999999999999999998876543
No 18
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.97 E-value=5.4e-31 Score=213.20 Aligned_cols=151 Identities=42% Similarity=0.629 Sum_probs=134.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||++|.++||+|++|||++++.+++.+.|++.++|+.|+++++|+||+|||++.+ +++++.+.. +++. ..++
T Consensus 12 mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~-v~~v~~~~~-i~~~--l~~g 87 (163)
T PF03446_consen 12 MGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDA-VEAVLFGEN-ILAG--LRPG 87 (163)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHH-HHHHHHCTT-HGGG--S-TT
T ss_pred HHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchh-hhhhhhhhH-Hhhc--cccc
Confidence 89999999999999999999999999999999999999999999999999999999888 999998866 6665 3578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|++++++++.+.+. +++|+|+|++|++..++.|++++++||+++++++++++|+.++.++
T Consensus 88 ~iiid~sT~~p~~~~~~~~~~~~~----------g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v 157 (163)
T PF03446_consen 88 KIIIDMSTISPETSRELAERLAAK----------GVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNV 157 (163)
T ss_dssp EEEEE-SS--HHHHHHHHHHHHHT----------TEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEE
T ss_pred eEEEecCCcchhhhhhhhhhhhhc----------cceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999998752 3899999999999999999999999999999999999999999999
Q ss_pred Ee-eCC
Q 022170 161 IY-CGG 165 (301)
Q Consensus 161 ~~-~g~ 165 (301)
+| +|+
T Consensus 158 ~~~~G~ 163 (163)
T PF03446_consen 158 YHYVGP 163 (163)
T ss_dssp EEE-ES
T ss_pred eeeeCc
Confidence 84 475
No 19
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.96 E-value=6.8e-30 Score=229.59 Aligned_cols=271 Identities=16% Similarity=0.172 Sum_probs=213.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------C------CCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------G------VPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------g------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||++||.+|+++||+|++|+|++++.+.+.+. | +..+++++++++.+|+||+|+|+. + +++++.
T Consensus 15 mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~~-~-~~~v~~ 92 (328)
T PRK14618 15 WGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPSK-A-LRETLA 92 (328)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECchH-H-HHHHHH
Confidence 89999999999999999999999988888764 3 335668889889999999999966 4 788874
Q ss_pred CCCccccCCCCCCCeEEEEeCC-CCHHH--HHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCH
Q 022170 67 GPNGLLQGGNSVRPQLLIDSST-IDPQT--SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSE 143 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~st-~~p~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~ 143 (301)
. + .++.++|++++ +.|.+ .+.+++.+.+. ... ++.++.+|..........+++++++|+++
T Consensus 93 ~----l-----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~---~~~----~~~~~~gP~~a~~~~~~~~~~~~~~~~~~ 156 (328)
T PRK14618 93 G----L-----PRALGYVSCAKGLAPDGGRLSELARVLEFL---TQA----RVAVLSGPNHAEEIARFLPAATVVASPEP 156 (328)
T ss_pred h----c-----CcCCEEEEEeeccccCCCccchHHHHHHHh---cCC----CeEEEECccHHHHHHcCCCeEEEEEeCCH
Confidence 3 1 23468888887 67664 66777766430 001 25678888777666666678899999999
Q ss_pred HHHHHHHHHHHhcCCCeE--------eeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022170 144 DAYQAAKPLFLSMGKNTI--------YCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 206 (301)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~--------~~g~---------~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~ 206 (301)
+.+++++++|+..+.+++ +++. .|.+..+|+.+|+..+.++++++|+..++++.|++++++++
T Consensus 157 ~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~ 236 (328)
T PRK14618 157 GLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYG 236 (328)
T ss_pred HHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhc
Confidence 999999999999988776 3443 48889999999999999999999999999999999999999
Q ss_pred HHhhc----CCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCC
Q 022170 207 ILNSS----SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 282 (301)
Q Consensus 207 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 282 (301)
+.+.+ ++.|+.++++.++..+..+... .+|.++|.+.++.||++.+.+++++.++++|+++.+++++ +
T Consensus 237 ~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~-~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~ 308 (328)
T PRK14618 237 LSGLGDLIATATSPHSRNRAAGEAIVRGVDR-EHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA-------R 308 (328)
T ss_pred CcchhheeeEeccCCCccHHHHHHHhCCCCH-HHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------h
Confidence 98874 5778777766433333322110 1256678999999999999999999999999999999988 4
Q ss_pred CCCchHHHHHHHhCC
Q 022170 283 DSKDFSCVFQHYYGG 297 (301)
Q Consensus 283 g~~d~~~~~~~~~~~ 297 (301)
++.|..++++.+.+.
T Consensus 309 ~~~~~~~~~~~~~~~ 323 (328)
T PRK14618 309 GGWDPLAGLRSLMGR 323 (328)
T ss_pred CCCCHHHHHHHHhcC
Confidence 667877777777543
No 20
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.96 E-value=2e-28 Score=225.42 Aligned_cols=247 Identities=13% Similarity=0.147 Sum_probs=189.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC----------------CCCCHHHHHhcCCEEEEecCCC------c
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----------------TKETPFEVAEASDVVITMLPSS------S 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~----------------~~~s~~e~~~~adiVi~~vp~~------~ 58 (301)
||.+||.+|++ ||+|++||+++++++.++ .|.. .+++..+++++||++|+|||++ .
T Consensus 17 vGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vptp~~~~~~~ 94 (425)
T PRK15182 17 VGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVPTPINTYKQP 94 (425)
T ss_pred chHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcCCCCCCCCCc
Confidence 89999999887 699999999999999998 4432 3445556789999999999998 3
Q ss_pred cchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCC--CCCceEEe--cccCCCHHHhhccc
Q 022170 59 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS--WENPVMLD--APVSGGVLAAEAGT 134 (301)
Q Consensus 59 ~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~--~pv~g~~~~a~~g~ 134 (301)
+ +..+....+++.+. ..+|++||++||+.|.+++++.+...+. ..|. ...+.... .|+.+|.......+
T Consensus 95 d-l~~v~~a~~~i~~~--l~~g~lVI~~STv~pgtt~~~~~~~l~~----~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~ 167 (425)
T PRK15182 95 D-LTPLIKASETVGTV--LNRGDIVVYESTVYPGCTEEECVPILAR----MSGMTFNQDFYVGYSPERINPGDKKHRLTN 167 (425)
T ss_pred c-hHHHHHHHHHHHHh--cCCCCEEEEecCCCCcchHHHHHHHHHh----ccCCCcCCCeeEeeCCCcCCCCcccccccC
Confidence 3 56777665566654 3467899999999999999876554431 1111 11222333 44555555554455
Q ss_pred eE-EEecCCHHHHHHHHHHHHhcC-CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 135 LT-FMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 135 l~-~~~gg~~~~~~~~~~ll~~~~-~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
+. ++.|++++..+.++++++.+. ..++++++++.|+++|+++|++.++++++++|+..+|++.|+|.++++++++.+
T Consensus 168 ~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~- 246 (425)
T PRK15182 168 IKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK- 246 (425)
T ss_pred CCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC-
Confidence 44 444557788899999999986 457889999999999999999999999999999999999999999999996544
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
|.... +.+| |...|+.||...+...+++.|.+++++++++++.+.
T Consensus 247 ---~~~~~----------------~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~ 292 (425)
T PRK15182 247 ---WNFLP----------------FRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDN 292 (425)
T ss_pred ---CCccc----------------CCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 21111 2234 667899999999999999999999999999887543
No 21
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.96 E-value=1.7e-27 Score=219.40 Aligned_cols=249 Identities=15% Similarity=0.153 Sum_probs=189.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC-CCHHHH---------------HhcCCEEEEecCCC-------
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ETPFEV---------------AEASDVVITMLPSS------- 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s~~e~---------------~~~adiVi~~vp~~------- 57 (301)
||.+||.+|+++||+|++||+++++++.++....... ..+++. .++||+||+|||++
T Consensus 14 ~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vptp~~~~~~~ 93 (415)
T PRK11064 14 IGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVPTPFKGDHEP 93 (415)
T ss_pred hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcCCCCCCCCCc
Confidence 8999999999999999999999999998764322211 122222 23799999999987
Q ss_pred --ccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhh----hccCCCCCceEEecc--cCCCHHH
Q 022170 58 --SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK----EKKDSWENPVMLDAP--VSGGVLA 129 (301)
Q Consensus 58 --~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~p--v~g~~~~ 129 (301)
.. +.+++. ++.+. ..++++||++||+.|.+++++...+.+.+.. ...|....+.++++| +..|...
T Consensus 94 dl~~-v~~~~~---~i~~~--l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~ 167 (415)
T PRK11064 94 DLTY-VEAAAK---SIAPV--LKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVM 167 (415)
T ss_pred ChHH-HHHHHH---HHHHh--CCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChh
Confidence 23 555543 34443 2467899999999999999999877653110 000111246778999 6666666
Q ss_pred hhccceEEEecC-CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 130 AEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 130 a~~g~l~~~~gg-~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
...+++..++|| +++.+++++++|+.++..++++++++.|+++|+++|++.+.++++++|+..+|++.|+|++++++++
T Consensus 168 ~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~ 247 (415)
T PRK11064 168 VELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWELIRLA 247 (415)
T ss_pred hhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 666777788999 9999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 209 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
+..... ....| .+||...|+.||...+.. +.+.+++++++++++-+.
T Consensus 248 ~~~~ri----~~l~p--------------G~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~ 294 (415)
T PRK11064 248 NRHPRV----NILQP--------------GPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDG 294 (415)
T ss_pred ccCCCc----ccCCC--------------CCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHH
Confidence 865421 11122 235667889999987744 556678889888776443
No 22
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.1e-27 Score=195.86 Aligned_cols=247 Identities=24% Similarity=0.352 Sum_probs=202.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHh---cCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE---ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~---~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||..|..+|.+.||+|++||+|++.++.+...|++.++|+.+.++ ...+|.++||.... +.+++.+..+.++
T Consensus 11 MG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~i-t~~vi~~la~~L~---- 85 (300)
T COG1023 11 MGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDI-TDAVIDDLAPLLS---- 85 (300)
T ss_pred hhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCc-hHHHHHHHHhhcC----
Confidence 899999999999999999999999999999999999999998864 68999999997755 8888887666663
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcC
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 157 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~ 157 (301)
+|.+|||-.++....+.+..+.+.+. +++|+|+..+|+...++.|. .+|+|||++++++++|+|+.++
T Consensus 86 -~GDivIDGGNS~y~Ds~rr~~~l~~k----------gi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 86 -AGDIVIDGGNSNYKDSLRRAKLLAEK----------GIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred -CCCEEEECCccchHHHHHHHHHHHhc----------CCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhC
Confidence 57899999999999999988888752 49999999999999999998 8999999999999999999987
Q ss_pred C---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CCccccccCC----CCCCc
Q 022170 158 K---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYN----PVPGV 227 (301)
Q Consensus 158 ~---~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~--G~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~ 227 (301)
. ...|+|+.|+++.+||++|-+.+.+++.++|.+.+.++. .+|.+++.++++.|+ .+||++.... .-+++
T Consensus 154 ~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L 233 (300)
T COG1023 154 PGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDL 233 (300)
T ss_pred cCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCH
Confidence 5 568999999999999999999999999999999999986 567899999999997 5788764221 11111
Q ss_pred c--cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHH-HHHHH
Q 022170 228 M--EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ-DIYAK 276 (301)
Q Consensus 228 ~--~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~-~~~~~ 276 (301)
- .+++. . -.+ =+.-++.+-+.|+|.|++..+. ..|.+
T Consensus 234 ~q~~g~v~-d-------SGE----GrWTv~~aldlgvpaPVia~al~~Rf~S 273 (300)
T COG1023 234 DQISGRVS-D-------SGE----GRWTVEEALDLGVPAPVIALALMMRFRS 273 (300)
T ss_pred HHhcCeec-c-------CCC----ceeehHHHHhcCCCchHHHHHHHHHHhc
Confidence 0 11100 0 001 1245667788899999887654 34443
No 23
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.95 E-value=6.7e-28 Score=216.58 Aligned_cols=276 Identities=17% Similarity=0.176 Sum_probs=206.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||+++|.+|+++||+|++|+|+++.++.+.+. ++..+.+++++++++|+||+|+|+. . +++++.
T Consensus 12 mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~-~-~~~v~~ 89 (325)
T PRK00094 12 WGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ-A-LREVLK 89 (325)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH-H-HHHHHH
Confidence 79999999999999999999999999888875 3445678888889999999999964 4 888886
Q ss_pred CCCccccCCCCCCCeEEEEeC-CCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHH
Q 022170 67 GPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 145 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~ 145 (301)
+....+ .+++++|+++ |+.|++.+++++.+.+.. +......++.+|.+.....+...++.++.+++.+.
T Consensus 90 ~l~~~~-----~~~~~vi~~~ngv~~~~~~~~~~~l~~~~-----~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~ 159 (325)
T PRK00094 90 QLKPLL-----PPDAPIVWATKGIEPGTGKLLSEVLEEEL-----PDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEEL 159 (325)
T ss_pred HHHhhc-----CCCCEEEEEeecccCCCCCcHHHHHHHHc-----CCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHH
Confidence 543332 3457888887 888877777777665421 10012467778887666555566777777889999
Q ss_pred HHHHHHHHHhcCCCeEeeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 146 YQAAKPLFLSMGKNTIYCGG-----------------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~g~-----------------~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
+++++++|+..+.++++..+ .|.+..+|+.+|.+......+++|++.++++.|+|+++++++.
T Consensus 160 ~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~ 239 (325)
T PRK00094 160 AERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLA 239 (325)
T ss_pred HHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhccc
Confidence 99999999998876655433 2777889999999999999999999999999999999999987
Q ss_pred hhc----CCCccccccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCC
Q 022170 209 NSS----SARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 283 (301)
Q Consensus 209 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g 283 (301)
+.+ ++.++.++++.++..+..+....+.. ..+ ...++.||++.++++++++|+++|+.++++++| ++
T Consensus 240 ~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~-------~~ 311 (325)
T PRK00094 240 GLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL-------YE 311 (325)
T ss_pred HhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------cC
Confidence 665 33444444433222221110000000 112 567889999999999999999999999999998 46
Q ss_pred CCchHHHHHHHhC
Q 022170 284 SKDFSCVFQHYYG 296 (301)
Q Consensus 284 ~~d~~~~~~~~~~ 296 (301)
+.+...+++.+.+
T Consensus 312 ~~~~~~~~~~~~~ 324 (325)
T PRK00094 312 GKDPREAVEDLMG 324 (325)
T ss_pred CCCHHHHHHHHhc
Confidence 7788888777654
No 24
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.95 E-value=2.2e-26 Score=209.65 Aligned_cols=233 Identities=16% Similarity=0.158 Sum_probs=179.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh----------------CCCCCC--CCHHHHHhcCCEEEEecCCC-----
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----------------MGVPTK--ETPFEVAEASDVVITMLPSS----- 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~----------------~g~~~~--~s~~e~~~~adiVi~~vp~~----- 57 (301)
||.++|..|+. ||+|++||+++++++.+++ .+...+ .++.+++.++|+||+|||++
T Consensus 11 vGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~ 89 (388)
T PRK15057 11 VGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKT 89 (388)
T ss_pred HHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEeCCCCCccCC
Confidence 79999987775 9999999999999998876 233333 34678889999999999987
Q ss_pred -----ccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhc
Q 022170 58 -----SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 132 (301)
Q Consensus 58 -----~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~ 132 (301)
.. +++++.+ +.+ ..+++++|++||++|.+++++.+.+.+. ++.| .|..+.+
T Consensus 90 ~~~dl~~-v~~v~~~---i~~---~~~g~lVV~~STv~pgtt~~l~~~~~~~----------~v~~-------~PE~l~~ 145 (388)
T PRK15057 90 NYFNTSS-VESVIKD---VVE---INPYAVMVIKSTVPVGFTAAMHKKYRTE----------NIIF-------SPEFLRE 145 (388)
T ss_pred CCcChHH-HHHHHHH---HHh---cCCCCEEEEeeecCCchHHHHHHHhhcC----------cEEE-------CcccccC
Confidence 23 5666543 332 1357899999999999999999876531 1333 4445556
Q ss_pred cce--------EEEecCCHHHHHHHHHHHHh--cCCCeE-eeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 022170 133 GTL--------TFMVGGSEDAYQAAKPLFLS--MGKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 201 (301)
Q Consensus 133 g~l--------~~~~gg~~~~~~~~~~ll~~--~~~~~~-~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~ 201 (301)
|++ .+++|++++..+++.++|.. ++..+. ++++.+.|+++|+++|++.++++++++|+..+|++.|+|.
T Consensus 146 G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~ 225 (388)
T PRK15057 146 GKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNT 225 (388)
T ss_pred CcccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 776 89999988888889998854 555444 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 202 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
+++.++++..+.-+. ...+| .+||...|+.||...+...+ .++++++++++.++-+.
T Consensus 226 ~eV~~a~~~d~ri~~--~~l~p--------------G~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~ 282 (388)
T PRK15057 226 RQIIEGVCLDPRIGN--HYNNP--------------SFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRT 282 (388)
T ss_pred HHHHHHhcCCCCCCC--ccCCC--------------CCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHH
Confidence 999999987642111 01112 23677889999999987655 56788999998876443
No 25
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.95 E-value=1.2e-26 Score=201.64 Aligned_cols=276 Identities=15% Similarity=0.179 Sum_probs=215.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||++||..|+++||+|.+|.|+++.++++... ++.+++++.++++++|+|++++|. +. +++++.
T Consensus 12 wGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs-~~-~r~v~~ 89 (329)
T COG0240 12 WGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS-QA-LREVLR 89 (329)
T ss_pred HHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh-HH-HHHHHH
Confidence 79999999999999999999999999988774 256778999999999999999995 55 999998
Q ss_pred CCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHH
Q 022170 67 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 146 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~ 146 (301)
+.++.+. ++..++.-+.++.|++.+.+++.+.+. .+. ..+.++++|.+..+......+.+.+.+-|++..
T Consensus 90 ~l~~~l~----~~~~iv~~sKGie~~t~~l~seii~e~----l~~--~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a 159 (329)
T COG0240 90 QLKPLLL----KDAIIVSATKGLEPETGRLLSEIIEEE----LPD--NPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAA 159 (329)
T ss_pred HHhhhcc----CCCeEEEEeccccCCCcchHHHHHHHH----cCC--CeEEEEECccHHHHHhcCCCcEEEEecCCHHHH
Confidence 7654442 232344455789999999999988763 111 127899999999998888888777777799999
Q ss_pred HHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022170 147 QAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 209 (301)
Q Consensus 147 ~~~~~ll~~~~~~~~~~g~~-----------------g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 209 (301)
++++.+|..-..+++...++ |....+.+.+|+..+.++++++|+.+|+.++|.++++++.+-+
T Consensus 160 ~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsG 239 (329)
T COG0240 160 EKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSG 239 (329)
T ss_pred HHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccccc
Confidence 99999988755554443331 4445567889999999999999999999999999999999988
Q ss_pred hc----CCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCC
Q 022170 210 SS----SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 285 (301)
Q Consensus 210 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~ 285 (301)
.| +|+|..++|+..+..+.++..+.........+.++.+..+.++++++++++++|+++++|+++. +..
T Consensus 240 lGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~-------~~~ 312 (329)
T COG0240 240 LGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLY-------EGL 312 (329)
T ss_pred ccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-------CCC
Confidence 88 4677777877655444343222222223456788999999999999999999999999999885 445
Q ss_pred chHHHHHHHh
Q 022170 286 DFSCVFQHYY 295 (301)
Q Consensus 286 d~~~~~~~~~ 295 (301)
+....++.+.
T Consensus 313 ~~~~~~~~L~ 322 (329)
T COG0240 313 DPKEAIEELM 322 (329)
T ss_pred CHHHHHHHHh
Confidence 5556666553
No 26
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.95 E-value=3e-27 Score=210.41 Aligned_cols=253 Identities=17% Similarity=0.185 Sum_probs=188.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||++||.+|.++||+|++|+|++. .++.++++++|+||+|+|++ . +++++.+..... ..++
T Consensus 15 ~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~-~-~~~v~~~l~~~~----~~~~ 75 (308)
T PRK14619 15 WGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSMK-G-VRPVAEQVQALN----LPPE 75 (308)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECChH-H-HHHHHHHHHHhc----CCCC
Confidence 799999999999999999999864 57888999999999999975 5 888886543211 1356
Q ss_pred eEEEEeCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCC
Q 022170 81 QLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 159 (301)
Q Consensus 81 ~ivid~st-~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~ 159 (301)
+++|++|+ +.|.+.+.+++.+... .. ...+..+.+|....+.....++.++++|++++.+++++++|+..+.+
T Consensus 76 ~ivi~~s~gi~~~~~~~~s~~~~~~----~~--~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~ 149 (308)
T PRK14619 76 TIIVTATKGLDPETTRTPSQIWQAA----FP--NHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFR 149 (308)
T ss_pred cEEEEeCCcccCCCCcCHHHHHHHH----cC--CCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEE
Confidence 78999986 8888777777766431 00 00122223333222222333578899999999999999999999888
Q ss_pred eEeeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCC
Q 022170 160 TIYCGG-----------------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYN 222 (301)
Q Consensus 160 ~~~~g~-----------------~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 222 (301)
+++.++ .|.+..+|+.+|...+..+.++.|++.+++++|+++++++++. +.+.++...
T Consensus 150 ~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~--g~gd~~~t~--- 224 (308)
T PRK14619 150 VYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLS--GLGDLLATC--- 224 (308)
T ss_pred EEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccccc--chhhhheee---
Confidence 875555 2334455699999999999999999999999999999999853 333333211
Q ss_pred CCCCcccCCCCCCCCCCCcchhhH----------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCc
Q 022170 223 PVPGVMEGVPASRNYGGGFASKLM----------------AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 286 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d 286 (301)
..+.+|+|..+|.+..+ .||++.+++++++.|+++|++++++++| +++.+
T Consensus 225 -------~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~-------~~~~~ 290 (308)
T PRK14619 225 -------TSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLL-------QGEIT 290 (308)
T ss_pred -------cCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------cCCCC
Confidence 02345677666666665 9999999999999999999999999999 46777
Q ss_pred hHHHHHHHhCC
Q 022170 287 FSCVFQHYYGG 297 (301)
Q Consensus 287 ~~~~~~~~~~~ 297 (301)
...+++.+..+
T Consensus 291 ~~~~~~~l~~~ 301 (308)
T PRK14619 291 PQQALEELMER 301 (308)
T ss_pred HHHHHHHHHcC
Confidence 77777777653
No 27
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.92 E-value=9.2e-24 Score=188.07 Aligned_cols=255 Identities=13% Similarity=0.139 Sum_probs=194.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCCC-------------CCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMGV-------------PTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g~-------------~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||++||.+|+++||+|++|||+++..+.. .+.|. ..+.+++++++++|+|+.|+|+
T Consensus 13 mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe 92 (308)
T PRK06129 13 IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVADADYVQESAPE 92 (308)
T ss_pred HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCCCCEEEECCcC
Confidence 79999999999999999999999877653 33442 4677898999999999999998
Q ss_pred CccchhhhhcC-CCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccce
Q 022170 57 SSHQVLDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 135 (301)
Q Consensus 57 ~~~~~~~v~~~-~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l 135 (301)
+.+ ++..+.+ ...+. ++.+++. ||+++....++++.+.. . +..+.++|+.+.... .+
T Consensus 93 ~~~-~k~~~~~~l~~~~------~~~~ii~-ssts~~~~~~la~~~~~------~----~~~~~~hp~~p~~~~----~l 150 (308)
T PRK06129 93 NLE-LKRALFAELDALA------PPHAILA-SSTSALLASAFTEHLAG------R----ERCLVAHPINPPYLI----PV 150 (308)
T ss_pred CHH-HHHHHHHHHHHhC------CCcceEE-EeCCCCCHHHHHHhcCC------c----ccEEEEecCCCcccC----ce
Confidence 765 5555433 22222 2345555 44445556677776643 2 257889998753211 25
Q ss_pred EEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 136 TFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 136 ~~~~g---g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
..+++ ++++.++++.++++.+|++++++++.+.+. ++||++ .++++|++.++++.|+|++++.+++..+.
T Consensus 151 veiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl~----~a~~~EA~~l~~~g~~~~~~id~~~~~~~ 223 (308)
T PRK06129 151 VEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRLQ----GALLREAFRLVADGVASVDDIDAVIRDGL 223 (308)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 66776 789999999999999999999999767776 455543 37889999999999999999999999988
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHH
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~ 292 (301)
+.+|.+ .+| ....+.|.++|......||..++.+++++.+.++|+++...+......+.-++..++..+.+
T Consensus 224 g~~~~~--~gp-------~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (308)
T PRK06129 224 GLRWSF--MGP-------FETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQA 294 (308)
T ss_pred CCCccC--cCH-------HHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 777654 222 12345677788899999999999999999999999999888877777777777787777655
Q ss_pred H
Q 022170 293 H 293 (301)
Q Consensus 293 ~ 293 (301)
+
T Consensus 295 ~ 295 (308)
T PRK06129 295 W 295 (308)
T ss_pred H
Confidence 3
No 28
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=4.2e-23 Score=181.94 Aligned_cols=248 Identities=15% Similarity=0.168 Sum_probs=193.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------C-CCCCCCHHHHHhcCCEEEEecCCCcc-
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVVITMLPSSSH- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~adiVi~~vp~~~~- 59 (301)
.|...+.+|++.||+|+++|.+++|++.+++. | ..++++.+++++++|++|+|||+|..
T Consensus 11 VGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIavgTP~~~ 90 (414)
T COG1004 11 VGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIAVGTPPDE 90 (414)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEEcCCCCCC
Confidence 37888999999999999999999999888763 2 56788999999999999999999853
Q ss_pred -------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhc
Q 022170 60 -------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 132 (301)
Q Consensus 60 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~ 132 (301)
.+.+++.. +.+. ..+.+++|.-||+.|+|++++.+.+.+.. .+ .++..+..|.|-.+..|..
T Consensus 91 dg~aDl~~V~ava~~---i~~~--~~~~~vvV~KSTVPvGt~~~v~~~i~~~~----~~--~~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 91 DGSADLSYVEAVAKD---IGEI--LDGKAVVVIKSTVPVGTTEEVRAKIREEN----SG--KDFEVASNPEFLREGSAVY 159 (414)
T ss_pred CCCccHHHHHHHHHH---HHhh--cCCCeEEEEcCCCCCCchHHHHHHHHhhc----cc--CCceEecChHHhcCcchhh
Confidence 24444433 3332 22348999999999999999998876521 11 1467888888877766665
Q ss_pred cce---EEEecCC-HHHHHHHHHHHHhc---CCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 022170 133 GTL---TFMVGGS-EDAYQAAKPLFLSM---GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 205 (301)
Q Consensus 133 g~l---~~~~gg~-~~~~~~~~~ll~~~---~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~ 205 (301)
.++ .+++|.+ +++.+.++++++.+ ..+++ .-+...|+++|+.+|++.+..+.+++|+..+|++.|+|.+++.
T Consensus 160 D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l-~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~ 238 (414)
T COG1004 160 DFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPIL-FTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQVA 238 (414)
T ss_pred hccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEE-EecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 544 4888884 44678888888775 33444 4456899999999999999999999999999999999999999
Q ss_pred HHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 206 KILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
+.++...--++. ..++ ..||...|+.||.+.++..++++|.+.++++++.++-+.
T Consensus 239 ~gIGlD~RIG~~--fl~a--------------G~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~ 293 (414)
T COG1004 239 EGIGLDPRIGNH--FLNA--------------GFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNER 293 (414)
T ss_pred HHcCCCchhhHh--hCCC--------------CCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 999876411110 1111 236788999999999999999999999999999876543
No 29
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.90 E-value=1.3e-22 Score=181.43 Aligned_cols=192 Identities=18% Similarity=0.221 Sum_probs=153.6
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh-----hHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|++||.+|+++||+|++|||+++ +.+.+...|+..++++.++++++|+||+|+|++.. +++++.+ +.+.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~-v~~Vl~~---L~~~-- 105 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKK-TVEIAKN---ILPH-- 105 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHH-HHHHHHH---HHhh--
Confidence 78999999999999999999987 45567778988888999999999999999998775 7888864 3333
Q ss_pred CCCCeEEEEeCCCCHHHH-HHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccceEEEecC--------CHHHH
Q 022170 77 SVRPQLLIDSSTIDPQTS-RNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG--------SEDAY 146 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~-~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~l~~~~gg--------~~~~~ 146 (301)
..++++|||+||++|... +.+.+.+... ....++.+. ++++.+++ .+.+.+++|| +++.+
T Consensus 106 L~~g~IVId~ST~~~~~~s~~l~~~l~~~------~~~~gi~~~~p~~v~Gae----~g~l~Vm~gg~t~~~~~~~~e~~ 175 (342)
T PRK12557 106 LPENAVICNTCTVSPVVLYYSLEGELRTK------RKDVGISSMHPAAVPGTP----QHGHYVIAGKTTNGTELATEEQI 175 (342)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHhccc------ccccCeeecCCccccccc----cchheEEeCCCcccccCCCHHHH
Confidence 245689999999999987 6676666421 001134444 44455554 3444667665 89999
Q ss_pred HHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022170 147 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 210 (301)
Q Consensus 147 ~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~ 210 (301)
++++++|+.++.++++++ .|.++.+|+++|++.+.+.++++|++.++++.|.++.++++-+..
T Consensus 176 e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~ 238 (342)
T PRK12557 176 EKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQIL 238 (342)
T ss_pred HHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999887776 599999999999999999999999999999999999987766543
No 30
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.90 E-value=2.5e-23 Score=160.14 Aligned_cols=122 Identities=34% Similarity=0.576 Sum_probs=109.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 246 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (301)
|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.||.++.+.| . .+.+++|+++|+++..
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~--~----~~~~~~~~~~f~l~~~ 74 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAP--R----MILNGDFDPGFSLDLA 74 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHH--H----HHHTTTTCSSSBHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhh--h----hhhcccCCccchhHhh
Confidence 789999999999999999999999999999999999999999999999888765522 1 2457899999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHH
Q 022170 247 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294 (301)
Q Consensus 247 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 294 (301)
.||++++.+++++.|+|+|+++.+.++|+.+.++|+|+.|+++++++|
T Consensus 75 ~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 75 RKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999999999986
No 31
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.88 E-value=1.1e-20 Score=175.72 Aligned_cols=246 Identities=15% Similarity=0.131 Sum_probs=186.2
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHHhCC-------------------CCCCCCHHHHHhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMG-------------------VPTKETPFEVAEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~e~~~~adiVi~~vp~~~~ 59 (301)
+|.++|..|+++| |+|++||+++++++.+++.+ ..++++..+++++||++|+|||+|..
T Consensus 12 vGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~advi~I~V~TP~~ 91 (473)
T PLN02353 12 VGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTK 91 (473)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCEEEEEeCCCCC
Confidence 6899999999884 78999999999999876532 33456677888999999999987752
Q ss_pred -------------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCC
Q 022170 60 -------------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 126 (301)
Q Consensus 60 -------------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~ 126 (301)
.+.+++.. +.+. ..++++||..||+.|.+++++.+.+.+. ..| .++++..+|.+-.
T Consensus 92 ~~g~~~~~~~Dls~v~~a~~~---i~~~--l~~~~lVv~~STvp~Gtt~~~~~~l~~~----~~g--~~f~v~~~PErl~ 160 (473)
T PLN02353 92 TRGLGAGKAADLTYWESAARM---IADV--SKSDKIVVEKSTVPVKTAEAIEKILTHN----SKG--INFQILSNPEFLA 160 (473)
T ss_pred CCCCcCCCCCcHHHHHHHHHH---HHhh--CCCCcEEEEeCCCCCChHHHHHHHHHhh----CCC--CCeEEEECCCccC
Confidence 13444433 2222 2457899999999999999998887652 112 2467888998876
Q ss_pred HHHhhccc---eEEEecCC-----HHHHHHHHHHHHhcCC-CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022170 127 VLAAEAGT---LTFMVGGS-----EDAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 197 (301)
Q Consensus 127 ~~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~~~-~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~ 197 (301)
|..+.... -.+++||. +++.++++.+++.+.. .++.+.++..|++.|++.|.+.++.+++++|+..+|++.
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~ 240 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65554432 24667883 3357888899998853 456677889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC--chHHHHHHHH
Q 022170 198 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--CPLTSQAQDI 273 (301)
Q Consensus 198 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~ 273 (301)
|+|..++.++++..+-.++. ...| .+||...|+.||...+...+++.|.+ +++++++.++
T Consensus 241 giD~~eV~~~~~~d~rig~~--~l~P--------------G~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~i 302 (473)
T PLN02353 241 GADVSQVSHAVGKDSRIGPK--FLNA--------------SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKM 302 (473)
T ss_pred CCCHHHHHHHhCCCCcCCCC--CCCC--------------CCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 99999999998876411110 1112 13566789999999999999999988 7888777654
No 32
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=3.6e-21 Score=169.13 Aligned_cols=216 Identities=19% Similarity=0.272 Sum_probs=160.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------C-CCCCCCHHHHHhcCCEEEEecCCCcc-
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVVITMLPSSSH- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~adiVi~~vp~~~~- 59 (301)
+|.++|..++++|++|+++|.|+.+++.++.. | .++++++.++ +.||++++|||++..
T Consensus 20 VGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~iI~VPTPl~~ 98 (436)
T COG0677 20 VGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVFIICVPTPLKK 98 (436)
T ss_pred ccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEEEEEecCCcCC
Confidence 69999999999999999999999999888653 2 4555566554 489999999999742
Q ss_pred ----chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCC--CCceEEeccc--CCCHHHhh
Q 022170 60 ----QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW--ENPVMLDAPV--SGGVLAAE 131 (301)
Q Consensus 60 ----~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~pv--~g~~~~a~ 131 (301)
.+..|....+.+.+. ..+|.+||--||+.|+|++++...+.+. ..|.. .++..-.+|. ..|...-+
T Consensus 99 ~~~pDls~v~~aa~sIa~~--L~kG~LVIlEST~~PGTTe~v~~plle~----~sgL~~~~Df~laysPERv~PG~~~~e 172 (436)
T COG0677 99 YREPDLSYVESAARSIAPV--LKKGDLVILESTTPPGTTEEVVKPLLEE----RSGLKFGEDFYLAYSPERVLPGNVLKE 172 (436)
T ss_pred CCCCChHHHHHHHHHHHHh--cCCCCEEEEecCCCCCcHHHHHHHHHhh----cCCCcccceeeEeeCccccCCCchhhh
Confidence 022222222233333 2478899999999999999999988762 12211 2454555663 33333222
Q ss_pred ccceEEEecC-CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022170 132 AGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 210 (301)
Q Consensus 132 ~g~l~~~~gg-~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~ 210 (301)
--+..=++|| +++..+.++.+++.+-..++.+.+.-.|++.|+..|++..++++++||...+|+++|+|.++++++.+.
T Consensus 173 l~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevIeaAnt 252 (436)
T COG0677 173 LVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVIEAANT 252 (436)
T ss_pred hhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHHHHhcc
Confidence 2233445666 788889999999999877888888999999999999999999999999999999999999999999987
Q ss_pred cCCCccccccCCCCCCc
Q 022170 211 SSARCWSSDSYNPVPGV 227 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~~~ 227 (301)
.+- ...+.|+|++
T Consensus 253 ~P~----~~~~~PGpGv 265 (436)
T COG0677 253 KPR----VNIFYPGPGV 265 (436)
T ss_pred CCc----eeecCCCCCC
Confidence 642 2234555554
No 33
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=2.6e-21 Score=169.17 Aligned_cols=253 Identities=21% Similarity=0.305 Sum_probs=189.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCCCCCCHHHHH---hcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVA---EASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~---~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||+.||.|..++||+|.+|||++++.+.+.+. .+..+.|++|.+ +...-|+++|..... +..++.++.+++
T Consensus 14 MG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~-VD~~I~~L~p~L 92 (473)
T COG0362 14 MGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTP-VDAVIEQLLPLL 92 (473)
T ss_pred hhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCc-HHHHHHHHHhhc
Confidence 89999999999999999999999999998775 256677888875 568899999987665 788887765555
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 152 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 152 (301)
.+|.++||-.+.....+.+.-+.+.+ . ++.|+...|+||+..+..|. .+|.||++++++.++|+
T Consensus 93 -----e~gDIiIDGGNs~y~DT~RR~~eL~~------~----Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pi 156 (473)
T COG0362 93 -----EKGDIIIDGGNSHYKDTIRRNKELSE------K----GILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPI 156 (473)
T ss_pred -----CCCCEEEeCCCcCCchHHHHHHHHHh------c----CCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHH
Confidence 36789999988766655555555554 2 38999999999999999998 89999999999999999
Q ss_pred HHhcC------CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hhcCCCccccccCC
Q 022170 153 FLSMG------KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKIL---NSSSARCWSSDSYN 222 (301)
Q Consensus 153 l~~~~------~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~~---~~~~~~~~~~~~~~ 222 (301)
|..++ ..+.++|+-|.+|.+|+++|-+.+.-+++++|+..+.+. +|++.+++.+++ +.+...|.+.+...
T Consensus 157 l~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~ 236 (473)
T COG0362 157 LTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITA 236 (473)
T ss_pred HHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99985 255789999999999999999999999999999999998 799988766664 45544444433211
Q ss_pred CCCCcccCCCCCCCCCCC-cchhhHHHHH------HHHHHHHHHcCCCchHHHHH-HHHHHHH
Q 022170 223 PVPGVMEGVPASRNYGGG-FASKLMAKDL------NLALASAKEVGVDCPLTSQA-QDIYAKL 277 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~-~~~~~~~kd~------~~~~~~a~~~g~~~p~~~~~-~~~~~~a 277 (301)
. ++. ..|-+.+ .-++..+... +....-|.+.|+|++++..+ ...+-+.
T Consensus 237 ~---IL~----~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs 292 (473)
T COG0362 237 D---ILR----KKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSS 292 (473)
T ss_pred H---HHh----hcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 1 000 0111112 1122222111 24556678899999877664 3444443
No 34
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.86 E-value=2.7e-21 Score=173.96 Aligned_cols=275 Identities=11% Similarity=0.031 Sum_probs=199.2
Q ss_pred CcHHHHHHHHhCC-------CeEEEEcCChh-----hHHHHHhCC--------------CCCCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDMG--------------VPTKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G-------~~V~~~dr~~~-----~~~~l~~~g--------------~~~~~s~~e~~~~adiVi~~v 54 (301)
||++||..|+++| |+|.+|.|+++ .++.+++.+ +.+++++.++++++|+|+++|
T Consensus 22 wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav~~aDiIvlAV 101 (365)
T PTZ00345 22 WGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAVEDADLLIFVI 101 (365)
T ss_pred HHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHHhcCCEEEEEc
Confidence 7999999999998 89999999986 366776532 445678889999999999999
Q ss_pred CCCccchhhhhcCCCc--cccCCCCCCCeEEE-EeCCCCHHHH--HHHHHHHhhchhhhccCCCCCceEEecccCCCHHH
Q 022170 55 PSSSHQVLDVYNGPNG--LLQGGNSVRPQLLI-DSSTIDPQTS--RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 129 (301)
Q Consensus 55 p~~~~~~~~v~~~~~~--~l~~~~~~~~~ivi-d~st~~p~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~ 129 (301)
| ++. +++++.+..+ .+. +++++| -+.++.+++. +.+++.+.+. . + ..+.++.+|.+..+..
T Consensus 102 P-sq~-l~~vl~~l~~~~~l~-----~~~~iIS~aKGIe~~t~~~~~~sevi~e~----l-~--~~~~~LsGPs~A~Eva 167 (365)
T PTZ00345 102 P-HQF-LESVLSQIKENNNLK-----KHARAISLTKGIIVENGKPVLCSDVIEEE----L-G--IPCCALSGANVANDVA 167 (365)
T ss_pred C-hHH-HHHHHHHhccccccC-----CCCEEEEEeCCcccCCCCcccHHHHHHHH----h-C--CCeEEEECCCHHHHHH
Confidence 9 565 9999987765 332 333444 5567776654 5566666542 1 1 1367899999998888
Q ss_pred hhccceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHH
Q 022170 130 AEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALT 192 (301)
Q Consensus 130 a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~-----------------g~a~~~k~~~N~~~~~~~~~~~E~~~ 192 (301)
....+..++++-|++..+.++.+|+.-..+++...++ |.+..+++..|+..+.+++++.|+.+
T Consensus 168 ~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~ 247 (365)
T PTZ00345 168 REEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKL 247 (365)
T ss_pred cCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 8888877777889999999999998655555443331 33444557799999999999999999
Q ss_pred HHHHcC--CCHHHHHHHHhhcC--CCccccccCCCCCCcccCC---CCCCCCCC--CcchhhHHHHHHHHHHHHHHcCC-
Q 022170 193 LGQSLG--ISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGV---PASRNYGG--GFASKLMAKDLNLALASAKEVGV- 262 (301)
Q Consensus 193 l~~~~G--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~- 262 (301)
|++++| .++++++++.+.|+ .++..++|+..+..+.++. .++..... .....++...++.+.++++++++
T Consensus 248 l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~ 327 (365)
T PTZ00345 248 FGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLK 327 (365)
T ss_pred HHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCC
Confidence 999997 49999999988884 2233366665443333221 11100000 02456788899999999999999
Q ss_pred -CchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 263 -DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 263 -~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
++|+++++++++. ++.+...+++.+..
T Consensus 328 ~~~Pi~~~vy~il~-------~~~~~~~~~~~l~~ 355 (365)
T PTZ00345 328 KEFPLFTVTYKIAF-------EGADPSSLIDVLST 355 (365)
T ss_pred CCCCHHHHHHHHHh-------CCCCHHHHHHHHHc
Confidence 8999999999883 55566666666654
No 35
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.86 E-value=1.9e-21 Score=173.88 Aligned_cols=262 Identities=12% Similarity=0.065 Sum_probs=191.8
Q ss_pred CcHHHHHHHHhCC--------CeEEEEcC-----ChhhHHHHHhC--------C------CCCCCCHHHHHhcCCEEEEe
Q 022170 1 MGFRMASNLMKAG--------YKMAVHDV-----NCNVMKMFSDM--------G------VPTKETPFEVAEASDVVITM 53 (301)
Q Consensus 1 mG~~lA~~L~~~G--------~~V~~~dr-----~~~~~~~l~~~--------g------~~~~~s~~e~~~~adiVi~~ 53 (301)
||++||..|+++| |+|++|.| +++..+.+++. | ++++++++++++++|+||++
T Consensus 10 wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal~~ADiIIlA 89 (342)
T TIGR03376 10 WGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAAKGADILVFV 89 (342)
T ss_pred HHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHHhcCCEEEEE
Confidence 7999999999999 99999998 55555555542 1 33557889999999999999
Q ss_pred cCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHH--HHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh
Q 022170 54 LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ--TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 131 (301)
Q Consensus 54 vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~ 131 (301)
+|+ +. +++++....+.+. .+..++.-+.++.++ +.+.+++.+.+. . + ..+.++.+|.+..+....
T Consensus 90 VPs-~~-i~~vl~~l~~~l~----~~~~iVs~tKGie~~~~~~~~~se~i~e~----l-~--~~~~~lsGP~~A~Eva~~ 156 (342)
T TIGR03376 90 IPH-QF-LEGICKQLKGHVK----PNARAISCIKGLEVSKDGVKLLSDIIEEE----L-G--IPCGVLSGANLANEVAKE 156 (342)
T ss_pred CCh-HH-HHHHHHHHHhhcC----CCCEEEEEeCCcccCCCcCccHHHHHHHH----h-C--CCeEEeeCcchHHHHHcC
Confidence 995 44 8999887665552 222355555788888 778888877652 1 1 236789999999888888
Q ss_pred ccceEEEecCC----HHHHHHHHHHHHhcCCCeEeeCC-c----------------chHHHHHHHHHHHHHHHHHHHHHH
Q 022170 132 AGTLTFMVGGS----EDAYQAAKPLFLSMGKNTIYCGG-A----------------GNGAAAKICNNLTMAVSMLGVSEA 190 (301)
Q Consensus 132 ~g~l~~~~gg~----~~~~~~~~~ll~~~~~~~~~~g~-~----------------g~a~~~k~~~N~~~~~~~~~~~E~ 190 (301)
..+.+++.+.+ .+..+.++.+|+.-..+++...+ . |....+++..|+..+.+++++.|+
T Consensus 157 ~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em 236 (342)
T TIGR03376 157 KFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEM 236 (342)
T ss_pred CCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 88877777778 78888899998764444443333 1 333445577999999999999999
Q ss_pred HHHHHHcCCCHH--HHHHHHhhcC--CCccccccCCCCCCccc-CCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCC
Q 022170 191 LTLGQSLGISAS--TLTKILNSSS--ARCWSSDSYNPVPGVME-GVPASRNYGG--GFASKLMAKDLNLALASAKEVGVD 263 (301)
Q Consensus 191 ~~l~~~~G~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~ 263 (301)
.++++++|.+++ +++++.+.|+ .++..++++..+..+.+ |..++...+. .....++...++.+.+++++.+++
T Consensus 237 ~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~ 316 (342)
T TIGR03376 237 IKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKD 316 (342)
T ss_pred HHHHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCC
Confidence 999999999888 9999888884 23333666655444444 3222111111 224566788899999999999999
Q ss_pred --chHHHHHHHHHH
Q 022170 264 --CPLTSQAQDIYA 275 (301)
Q Consensus 264 --~p~~~~~~~~~~ 275 (301)
+|+++++++++.
T Consensus 317 ~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 317 DEFPLFEAVYQILY 330 (342)
T ss_pred cCCCHHHHHHHHHh
Confidence 999999999884
No 36
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.83 E-value=5.7e-20 Score=165.72 Aligned_cols=276 Identities=14% Similarity=0.131 Sum_probs=195.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC---------------CCCCCCHHHHHhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g---------------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~ 65 (301)
||+++|..|+++| +|++|.|+++..+.+++.+ +..++++.++++++|+||+|+|. .. +++++
T Consensus 18 ~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavps-~~-~~~vl 94 (341)
T PRK12439 18 WGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVPS-HG-FRGVL 94 (341)
T ss_pred HHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeCH-HH-HHHHH
Confidence 7999999999999 6889999999998887642 12356777888999999999994 55 88988
Q ss_pred cCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHH
Q 022170 66 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 145 (301)
Q Consensus 66 ~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~ 145 (301)
.+..+.+. +...++.-..++.+.+.+.+.+.+.+. ..+ ....++.+|-+..+......+..++.+.+++.
T Consensus 95 ~~i~~~l~----~~~~vIsl~kGi~~~t~~~~se~i~~~----l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~ 164 (341)
T PRK12439 95 TELAKELR----PWVPVVSLVKGLEQGTNMRMSQIIEEV----LPG--HPAGILAGPNIAREVAEGYAAAAVLAMPDQHL 164 (341)
T ss_pred HHHHhhcC----CCCEEEEEEeCCcCCCCCcHHHHHHHH----cCC--CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHH
Confidence 77655542 222344555677776666666665431 011 12456777766555444444444454557777
Q ss_pred HHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 146 YQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~g~~-----------------g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
.+.++.+|+.-+.+++...++ |....+++..|+..+.+++++.|+..++++.|.++++++++.
T Consensus 165 ~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~ 244 (341)
T PRK12439 165 ATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLA 244 (341)
T ss_pred HHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 888999998777666544443 333445677899988999999999999999999999999998
Q ss_pred hhcC----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCC
Q 022170 209 NSSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 284 (301)
Q Consensus 209 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~ 284 (301)
+.|+ +.|..++++..+..+.+|...+...+......++...++.++++++++++++|+++++++++ +++
T Consensus 245 G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il-------~~~ 317 (341)
T PRK12439 245 GMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVI-------NHG 317 (341)
T ss_pred hhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCC
Confidence 8884 55555676655544444332222111112357788999999999999999999999999988 466
Q ss_pred CchHHHHHHHhC
Q 022170 285 KDFSCVFQHYYG 296 (301)
Q Consensus 285 ~d~~~~~~~~~~ 296 (301)
.|...+++.+..
T Consensus 318 ~~~~~~~~~l~~ 329 (341)
T PRK12439 318 STVEQAYRGLIA 329 (341)
T ss_pred CCHHHHHHHHhc
Confidence 677777776654
No 37
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.82 E-value=8.1e-19 Score=165.48 Aligned_cols=251 Identities=15% Similarity=0.132 Sum_probs=170.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-------------------CC-CCCCCCHHHHHhcCCEEEEecCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDVVITMLPSSSHQ 60 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~e~~~~adiVi~~vp~~~~~ 60 (301)
||.+||.+|+++||+|++||+++++.+.+.+ .| +..++++++++++||+|+.|+|++.+
T Consensus 15 MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~Vieavpe~~~- 93 (495)
T PRK07531 15 IGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLD- 93 (495)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEEEEcCcCCHH-
Confidence 8999999999999999999999998766432 12 56778999999999999999998876
Q ss_pred hhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEec
Q 022170 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 140 (301)
Q Consensus 61 ~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~g 140 (301)
++..+.+. +.+. .++ .++|++||+.+..+ ++++.+.. + +..++++|+... ..+.++.+++
T Consensus 94 vk~~l~~~--l~~~--~~~-~~iI~SsTsgi~~s-~l~~~~~~------~----~r~~~~hP~nP~----~~~~Lvevv~ 153 (495)
T PRK07531 94 LKRRVLAE--IDAA--ARP-DALIGSSTSGFLPS-DLQEGMTH------P----ERLFVAHPYNPV----YLLPLVELVG 153 (495)
T ss_pred HHHHHHHH--HHhh--CCC-CcEEEEcCCCCCHH-HHHhhcCC------c----ceEEEEecCCCc----ccCceEEEcC
Confidence 77755431 2211 123 36788888877644 55555532 2 256888886632 1346788999
Q ss_pred CC---HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhcCCCcc
Q 022170 141 GS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG-VSEALTLGQSLGISASTLTKILNSSSARCW 216 (301)
Q Consensus 141 g~---~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~-~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~ 216 (301)
|+ ++.+++++++++.+|+.+++++ |.++|++..-+... ++|++.|+++.|++++++.++++.+.+.+|
T Consensus 154 g~~t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~ 225 (495)
T PRK07531 154 GGKTSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRW 225 (495)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc
Confidence 86 7899999999999999999997 46677777766677 499999999999999999999999887766
Q ss_pred ccccCCCCCCcccCCCCCCCCCC-CcchhhHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHH
Q 022170 217 SSDSYNPVPGVMEGVPASRNYGG-GFASKLMAKDLNLAL-ASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 290 (301)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~-~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~ 290 (301)
... +|.. .-|..+ .-.+..+.+-+.-.+ +..++.+-.+++.....+.+....+.-.|..++...
T Consensus 226 ~~~--Gpf~--------~~dl~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (495)
T PRK07531 226 AQM--GLFE--------TYRIAGGEAGMRHFLAQFGPCLKWPWTKLMDVPDLDDALVDKIAGQSDAQSGGLSIREL 291 (495)
T ss_pred ccc--chHH--------HHHhcCcHHHHHHHHHHhchhhhhHHHhccCCCccCHHHHHHHHHHHHHHcCCCCHHHH
Confidence 421 1110 001111 011223333333322 234555544566666666555555555555555443
No 38
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.1e-18 Score=150.59 Aligned_cols=192 Identities=20% Similarity=0.317 Sum_probs=161.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---C--CCCCCCHHHHH---hcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---G--VPTKETPFEVA---EASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~---g--~~~~~s~~e~~---~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||..|+.|.+.+||.|.+|||+.++++.+.+. | +..+.|+++.+ +....|++.|..... +...++++.+++
T Consensus 17 MGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~p-VD~~I~~L~p~L 95 (487)
T KOG2653|consen 17 MGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAP-VDQFIEELVPYL 95 (487)
T ss_pred hhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCc-HHHHHHHHHhhc
Confidence 89999999999999999999999999988765 2 34467899876 568899999987776 888887655555
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 152 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 152 (301)
.+|.+|||-.+.....+.+..+.+.. . ++-|+.+.|+|++..++.|. .+|.||+++++..++++
T Consensus 96 -----ekgDiIIDGGNs~y~dT~RR~~el~k------~----GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~i 159 (487)
T KOG2653|consen 96 -----EKGDIIIDGGNSEYQDTERRCRELAK------K----GILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDI 159 (487)
T ss_pred -----CCCCEEEeCCcccCcchHHHHHHHHh------c----CcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHH
Confidence 36789999988766655555555543 2 38899999999999999998 89999999999999999
Q ss_pred HHhcCC-------CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh
Q 022170 153 FLSMGK-------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN 209 (301)
Q Consensus 153 l~~~~~-------~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~~~ 209 (301)
|+.++. .+.++|+-|+++.+||++|-+.++-+++++|+..+.++ .|++.+++.+++.
T Consensus 160 fq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 160 FQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred HHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 988742 45789999999999999999999999999999999999 7999888877765
No 39
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.79 E-value=2.7e-18 Score=161.83 Aligned_cols=178 Identities=18% Similarity=0.208 Sum_probs=138.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.+||.+|+++||+|++||++++++++. .+.| ++.++++++ +.+||+||.|+|+
T Consensus 18 MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~aDlViEav~E 96 (507)
T PRK08268 18 MGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LADCDLVVEAIVE 96 (507)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCCCCEEEEcCcc
Confidence 89999999999999999999999988773 4455 466778866 5699999999999
Q ss_pred CccchhhhhcCC-CccccCCCCCCCeEE-EEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhcc
Q 022170 57 SSHQVLDVYNGP-NGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAG 133 (301)
Q Consensus 57 ~~~~~~~v~~~~-~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g 133 (301)
+.+ ++..+++. +.+ .+++.++ +|+||+++. ++++.+.. ..+..+.||++ +|++
T Consensus 97 ~~~-vK~~vf~~l~~~-----~~~~ailasntStl~i~---~la~~~~~------p~r~~G~hff~Pa~v~--------- 152 (507)
T PRK08268 97 RLD-VKQALFAQLEAI-----VSPDCILATNTSSLSIT---AIAAALKH------PERVAGLHFFNPVPLM--------- 152 (507)
T ss_pred cHH-HHHHHHHHHHhh-----CCCCcEEEECCCCCCHH---HHHhhcCC------cccEEEEeecCCcccC---------
Confidence 988 88887642 222 2345566 599999997 45554432 12223489998 6776
Q ss_pred ceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022170 134 TLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 209 (301)
Q Consensus 134 ~l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 209 (301)
.++.+++| ++++++++.++++.+++.++++++ +| ++.|-+.. ..++|++.++++.|++++++.+++.
T Consensus 153 ~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~~~~~~iD~al~ 223 (507)
T PRK08268 153 KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGVADPATIDAILR 223 (507)
T ss_pred eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 46888876 889999999999999999999987 56 34444442 4889999999999999999999997
Q ss_pred hcC
Q 022170 210 SSS 212 (301)
Q Consensus 210 ~~~ 212 (301)
.+.
T Consensus 224 ~~~ 226 (507)
T PRK08268 224 EAA 226 (507)
T ss_pred hcC
Confidence 654
No 40
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.79 E-value=1.3e-18 Score=157.44 Aligned_cols=249 Identities=18% Similarity=0.182 Sum_probs=166.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-----------------CCCHHHHHhcCCEEEEecCCCccchhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-----------------KETPFEVAEASDVVITMLPSSSHQVLD 63 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----------------~~s~~e~~~~adiVi~~vp~~~~~~~~ 63 (301)
||+.+|..|+++||+|++|+|++. .+.+.+.|... ++++ +.+..+|+||+|++++. ..+
T Consensus 13 mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~vk~~~--~~~ 88 (341)
T PRK08229 13 IGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTVKSAA--TAD 88 (341)
T ss_pred HHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEecCcc--hHH
Confidence 799999999999999999999764 46666655432 3344 56789999999999764 677
Q ss_pred hhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec--c---cCCCHHHhh---ccce
Q 022170 64 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA--P---VSGGVLAAE---AGTL 135 (301)
Q Consensus 64 v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--p---v~g~~~~a~---~g~l 135 (301)
++......+ .++++++++++ .....+.+.+.+.+ ..++.+ | +..+|.... .|++
T Consensus 89 ~~~~l~~~~-----~~~~iii~~~n-G~~~~~~l~~~~~~------------~~~~~g~~~~~~~~~~pg~~~~~~~g~l 150 (341)
T PRK08229 89 AAAALAGHA-----RPGAVVVSFQN-GVRNADVLRAALPG------------ATVLAGMVPFNVISRGPGAFHQGTSGAL 150 (341)
T ss_pred HHHHHHhhC-----CCCCEEEEeCC-CCCcHHHHHHhCCC------------CcEEEEEEEEEEEecCCceEEecCCCce
Confidence 775433332 34567877754 33334455555432 123333 2 233332222 4454
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
Q 022170 136 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS--------------------MLGVSEALTLGQ 195 (301)
Q Consensus 136 ~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~--------------------~~~~~E~~~l~~ 195 (301)
.+. +.+.++++.++|+..+.++.+.++++.+...|++.|.+.... ..++.|++.+++
T Consensus 151 ~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~ 227 (341)
T PRK08229 151 AIE---ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLK 227 (341)
T ss_pred Eec---CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 332 335578899999999999999999999999999999754433 378999999999
Q ss_pred HcCCCHHHHHHHHhhcC-----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHH------------HHHHHHH
Q 022170 196 SLGISASTLTKILNSSS-----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLN------------LALASAK 258 (301)
Q Consensus 196 ~~G~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~ 258 (301)
+.|++++.+.++...+. ..++..... ...+.+.++.. ...+.+|+. .+++.++
T Consensus 228 a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~ 297 (341)
T PRK08229 228 AAGIRPARLTPLPPAWIPRLLRLPDPLFRRL-------AGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAG 297 (341)
T ss_pred HcCCCccccCCCChhhhhhhhcCChHHHHHH-------HHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHH
Confidence 99999876544333221 011111100 00111222221 345899999 7999999
Q ss_pred HcCCCchHHHHHHHHHHHHHHCCCCC
Q 022170 259 EVGVDCPLTSQAQDIYAKLCENGHDS 284 (301)
Q Consensus 259 ~~g~~~p~~~~~~~~~~~a~~~g~g~ 284 (301)
++|+++|..+.++++++.+.+.|..-
T Consensus 298 ~~gv~~P~~~~~~~~~~~~~~~~~~~ 323 (341)
T PRK08229 298 RLGAPAPVNARLCALVHEAERAGARP 323 (341)
T ss_pred HcCCCCcHHHHHHHHHHHHHhCCCcC
Confidence 99999999999999999998876533
No 41
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.77 E-value=3.2e-18 Score=151.19 Aligned_cols=242 Identities=16% Similarity=0.138 Sum_probs=156.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC------------------------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM------------------------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~------------------------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.+||.+|+++||+|++||+++++++.+.+. +++.++++.+++++||+||+|+|+
T Consensus 12 mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe 91 (288)
T PRK09260 12 MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVADADLVIEAVPE 91 (288)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcCCCEEEEeccC
Confidence 89999999999999999999999998775431 134567888999999999999998
Q ss_pred CccchhhhhcCCCccccCCCCCCCeEE-EEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccce
Q 022170 57 SSHQVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 135 (301)
Q Consensus 57 ~~~~~~~v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l 135 (301)
+.+ ++..+.+. +.+. ..+++++ +++||++|....+. +.. .....+.+|+ +|+.++ .+
T Consensus 92 ~~~-~k~~~~~~--l~~~--~~~~~il~~~tSt~~~~~l~~~---~~~------~~r~~g~h~~-~Pv~~~-------~L 149 (288)
T PRK09260 92 KLE-LKKAVFET--ADAH--APAECYIATNTSTMSPTEIASF---TKR------PERVIAMHFF-NPVHKM-------KL 149 (288)
T ss_pred CHH-HHHHHHHH--HHhh--CCCCcEEEEcCCCCCHHHHHhh---cCC------cccEEEEecC-CCcccC-------ce
Confidence 876 66554331 2221 2345544 79999999864433 321 1111236888 787664 57
Q ss_pred EEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 136 TFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 136 ~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
+.+++| +++++++++++++.+++.++++++ ..+.. .|-+. ...++|++.+.+..-.+++++-.++..+.
T Consensus 150 ve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d-~~Gf~----~nRl~---~~~~~ea~~~~~~gv~~~~~iD~~~~~g~ 221 (288)
T PRK09260 150 VELIRGLETSDETVQVAKEVAEQMGKETVVVNE-FPGFV----TSRIS---ALVGNEAFYMLQEGVATAEDIDKAIRLGL 221 (288)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC-cccHH----HHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 889998 899999999999999999999986 12222 23222 25668999999876678999988776553
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchH
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 288 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~ 288 (301)
+. + .+|.. +-....++...+-++.+.+...+.-.|.|++....+--+...+.|.|..||+
T Consensus 222 g~-p----~Gp~~-----------~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~ 281 (288)
T PRK09260 222 NF-P----MGPLE-----------LGDLVGLDTRLNNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYT 281 (288)
T ss_pred CC-C----CCHHH-----------HHHHhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECC
Confidence 21 0 11110 0001224444443433333222222345555554444444666777877774
No 42
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.77 E-value=5.1e-18 Score=159.50 Aligned_cols=238 Identities=15% Similarity=0.151 Sum_probs=160.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.+||.+|+++||+|++||++++++++. .+.| ++.++++++ +.+||+||.|+|+
T Consensus 16 MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~aDlVIEav~E 94 (503)
T TIGR02279 16 MGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LADAGLVIEAIVE 94 (503)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCCCCEEEEcCcC
Confidence 89999999999999999999999988653 3334 345778865 5699999999999
Q ss_pred CccchhhhhcCC-CccccCCCCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhcc
Q 022170 57 SSHQVLDVYNGP-NGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAG 133 (301)
Q Consensus 57 ~~~~~~~v~~~~-~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g 133 (301)
+.+ ++..+++. +.++ +++.++. ++||.++. ++++.+.+ .....+.||++ +|++
T Consensus 95 ~~~-vK~~vf~~l~~~~-----~~~~IlasnTStl~i~---~iA~~~~~------p~r~~G~HFf~Papv~--------- 150 (503)
T TIGR02279 95 NLE-VKKALFAQLEELC-----PADTIIASNTSSLSIT---AIAAGLAR------PERVAGLHFFNPAPVM--------- 150 (503)
T ss_pred cHH-HHHHHHHHHHhhC-----CCCeEEEECCCCCCHH---HHHHhcCc------ccceEEEeccCccccC---------
Confidence 887 88876642 2222 3443333 56666665 45555532 12223589999 6776
Q ss_pred ceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022170 134 TLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 209 (301)
Q Consensus 134 ~l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 209 (301)
.++.+++| ++++++++.++++.+++.++++++ +|. ++|+++. ..++|++.++++.+++++++.+++.
T Consensus 151 ~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~~----~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 151 ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVAR----PYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 26889999 899999999999999999999996 563 4444443 6889999999999999999999998
Q ss_pred hcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH-HH-cCCCchHHHHHHHHHHHHHHCCCCCCch
Q 022170 210 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA-KE-VGVDCPLTSQAQDIYAKLCENGHDSKDF 287 (301)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a-~~-~g~~~p~~~~~~~~~~~a~~~g~g~~d~ 287 (301)
.+.+.. .+|.. . -|+ ..++....-.+.+.+.. .+ .-.|.++++...+.-+...+.|.|..||
T Consensus 222 ~~~G~~-----mGPf~------l--~D~---~Gldv~~~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y 285 (503)
T TIGR02279 222 DGAGFP-----MGPFE------L--TDL---IGHDVNFAVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDY 285 (503)
T ss_pred hcCCCC-----cCHHH------H--HHH---hhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeC
Confidence 654321 11110 0 011 11333333333332211 11 1134566666666566667788888887
Q ss_pred H
Q 022170 288 S 288 (301)
Q Consensus 288 ~ 288 (301)
.
T Consensus 286 ~ 286 (503)
T TIGR02279 286 R 286 (503)
T ss_pred C
Confidence 4
No 43
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.77 E-value=4.8e-18 Score=151.03 Aligned_cols=242 Identities=13% Similarity=0.109 Sum_probs=160.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh-------HH-----------HHHhCC-------------CCCCCC--HHHHHhcC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV-------MK-----------MFSDMG-------------VPTKET--PFEVAEAS 47 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~-------~~-----------~l~~~g-------------~~~~~s--~~e~~~~a 47 (301)
||..||..++.+||+|++||++++. ++ .+.+.| ++.+.+ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 9999999999999999999999852 11 112222 333333 66888999
Q ss_pred CEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecc-----
Q 022170 48 DVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP----- 122 (301)
Q Consensus 48 diVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p----- 122 (301)
|+||.|||++.+ ++..+++. +.+. ..+++++ +||+++....++++.+.. +.+..+.||+++|
T Consensus 81 D~ViEav~E~~~-~K~~~f~~--l~~~--~~~~~il--aSntS~~~~~~la~~~~~------p~r~~g~Hf~~Pp~~~~l 147 (314)
T PRK08269 81 DLVFEAVPEVLD-AKREALRW--LGRH--VDADAII--ASTTSTFLVTDLQRHVAH------PERFLNAHWLNPAYLMPL 147 (314)
T ss_pred CEEEECCcCCHH-HHHHHHHH--HHhh--CCCCcEE--EEccccCCHHHHHhhcCC------cccEEEEecCCccccCce
Confidence 999999999988 88877653 3222 2345444 788888878888887642 2222348999988
Q ss_pred --cCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 022170 123 --VSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 200 (301)
Q Consensus 123 --v~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~ 200 (301)
|++++ ++++++++++.++++.+|+.++++++.+ + +++.......++|++.++++.|++
T Consensus 148 vEVv~g~------------~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~ 207 (314)
T PRK08269 148 VEVSPSD------------ATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVAS 207 (314)
T ss_pred EEEeCCC------------CCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCC
Confidence 55444 5689999999999999999999999853 3 234445568889999999999999
Q ss_pred HHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHH
Q 022170 201 ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE-VGVDCPLTSQAQDIYAKLCE 279 (301)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~-~g~~~p~~~~~~~~~~~a~~ 279 (301)
++++.+++..+.+..+. ..+|.. . -| ...++....-++.+.+...+ .--+.|+++...+--+.+.+
T Consensus 208 ~e~iD~a~~~g~G~~~~--~~Gpf~------~--~D---~~Gld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k 274 (314)
T PRK08269 208 AEDIDKAIRTGFGLRFA--VLGLLE------F--ID---WGGCDILYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLR 274 (314)
T ss_pred HHHHHHHHHhCCCCCcc--CcCHHH------H--HH---hhhHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCccc
Confidence 99999999877542110 011100 0 01 11233333333333322211 11245666665555556777
Q ss_pred CCCCCCchH
Q 022170 280 NGHDSKDFS 288 (301)
Q Consensus 280 ~g~g~~d~~ 288 (301)
.|.|..||.
T Consensus 275 sG~GfY~y~ 283 (314)
T PRK08269 275 TGAGFYDYA 283 (314)
T ss_pred CCCcceeCC
Confidence 888888884
No 44
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.75 E-value=5e-17 Score=142.00 Aligned_cols=237 Identities=18% Similarity=0.231 Sum_probs=160.7
Q ss_pred CcHHHHHHHHhCCC----eEEEE-cCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGY----KMAVH-DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~----~V~~~-dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+|+++|.++|| +|++| ||++++.+.+.+.|+..+.++.++++++|+||+|+| +.+ +++++.+....+
T Consensus 11 mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~-~~~vl~~l~~~~--- 85 (266)
T PLN02688 11 MAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQV-VKDVLTELRPLL--- 85 (266)
T ss_pred HHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHH-HHHHHHHHHhhc---
Confidence 89999999999998 89999 999999999988899888899999999999999998 666 899986532222
Q ss_pred CCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccceEEEecCCHHHHHHHHHHH
Q 022170 76 NSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 153 (301)
Q Consensus 76 ~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 153 (301)
.+++++|.+ ++++.++.+ +.... ..++ ..|..+.........++...+++++.++.++++|
T Consensus 86 --~~~~~iIs~~~g~~~~~l~---~~~~~------------~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 148 (266)
T PLN02688 86 --SKDKLLVSVAAGITLADLQ---EWAGG------------RRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLF 148 (266)
T ss_pred --CCCCEEEEecCCCcHHHHH---HHcCC------------CCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHH
Confidence 345666655 666655443 22211 1344 3565554433322222222334788999999999
Q ss_pred HhcCCCeEeeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccc-cCCC
Q 022170 154 LSMGKNTIYCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD-SYNP 223 (301)
Q Consensus 154 ~~~~~~~~~~g~---------~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~ 223 (301)
+.+|. ++++++ .|++.+ +.+.++..+.|+ +++.|+|++++.+++..+...++.+. ..+.
T Consensus 149 ~~~G~-~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~ 217 (266)
T PLN02688 149 GAVGK-IWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGK 217 (266)
T ss_pred HhCCC-EEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99998 888754 344444 355666777777 88899999999999987754433311 0000
Q ss_pred CCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 224 VPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
-+..+ .++--.|+ -.....++..++.|++-.+.+++.+.++++.+.+
T Consensus 218 ~~~~l----~~~v~spg-------G~t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 218 HPGQL----KDMVTSPG-------GTTIAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred CHHHH----HHhCCCCc-------hHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 00000 01111121 1234667778889999999999999999998765
No 45
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.75 E-value=2.2e-17 Score=145.19 Aligned_cols=232 Identities=16% Similarity=0.205 Sum_probs=156.5
Q ss_pred CcHHHHHHHHhCC----CeEEEEcCChh-hHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAG----YKMAVHDVNCN-VMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G----~~V~~~dr~~~-~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||.+|+.+|.++| ++|++|||+++ +.+.+... |+..+.++.++++++|+||+|||+ .. +.+++.+....+
T Consensus 14 mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~-~~~vl~~l~~~~-- 89 (279)
T PRK07679 14 IAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KD-VAEALIPFKEYI-- 89 (279)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HH-HHHHHHHHHhhc--
Confidence 8999999999998 88999999864 56777654 787788899999999999999995 44 788875433222
Q ss_pred CCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCC---HHHhhccceEEEecCC---HHHHH
Q 022170 75 GNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG---VLAAEAGTLTFMVGGS---EDAYQ 147 (301)
Q Consensus 75 ~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~---~~~a~~g~l~~~~gg~---~~~~~ 147 (301)
.+++++|++ +|+++++.+++. .. ++|+++. ...+..+.++++++++ ++.++
T Consensus 90 ---~~~~liIs~~aGi~~~~l~~~~---~~----------------~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~ 147 (279)
T PRK07679 90 ---HNNQLIISLLAGVSTHSIRNLL---QK----------------DVPIIRAMPNTSAAILKSATAISPSKHATAEHIQ 147 (279)
T ss_pred ---CCCCEEEEECCCCCHHHHHHHc---CC----------------CCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHH
Confidence 245789996 899988766632 11 1233333 3344555667888875 66889
Q ss_pred HHHHHHHhcCCCeE------e--eCCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhhcCCCc-cc
Q 022170 148 AAKPLFLSMGKNTI------Y--CGGAGNGAAAKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARC-WS 217 (301)
Q Consensus 148 ~~~~ll~~~~~~~~------~--~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~-l~~~~G~~~~~~~~~~~~~~~~~-~~ 217 (301)
.++++|+.+|..++ + ++..|++.++ +..+.|++. .+++.|+|.+++.+++......+ .+
T Consensus 148 ~v~~l~~~~G~~~~v~e~~~~~~~a~~Gsgpa~-----------~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~ 216 (279)
T PRK07679 148 TAKALFETIGLVSVVEEEDMHAVTALSGSGPAY-----------IYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEM 216 (279)
T ss_pred HHHHHHHhCCcEEEeCHHHhhhHHHhhcCHHHH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999998554 3 3444444442 233444444 58999999999999998743211 22
Q ss_pred cccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 218 SDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
....+..|. .+.+++ .++++.. ..++..++.|+.--+.+++.+.++++.+.|
T Consensus 217 ~~~~~~~~~-----~l~~~v~spgg~t~-------~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 217 LKASEKHPS-----ILRKEITSPGGTTE-------AGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHhcCCCHH-----HHHHhcCCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 211111111 233455 5666543 445555667888888888888888887765
No 46
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.74 E-value=6.4e-17 Score=145.41 Aligned_cols=275 Identities=14% Similarity=0.105 Sum_probs=166.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHH-hcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVA-EASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~ 65 (301)
||+++|..|+++||+|++|+|+++.++.+++.+ ++.+.++.+++ ..+|+||+|+|+ .+ +++++
T Consensus 11 ~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks-~~-~~~~l 88 (326)
T PRK14620 11 FGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT-QQ-LRTIC 88 (326)
T ss_pred HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH-HH-HHHHH
Confidence 799999999999999999999998888887632 11335666766 589999999995 44 88888
Q ss_pred cCCCc-cccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHH
Q 022170 66 NGPNG-LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSED 144 (301)
Q Consensus 66 ~~~~~-~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~ 144 (301)
....+ .+. +...+++.++++...+.....+.+.+. .. .+.+..+.+|.+.........+...+.|.+.+
T Consensus 89 ~~l~~~~l~----~~~~vv~~~nGi~~~~~~~~~~~l~~~----~~--~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~ 158 (326)
T PRK14620 89 QQLQDCHLK----KNTPILICSKGIEKSSLKFPSEIVNEI----LP--NNPIAILSGPSFAKEIAEKLPCSIVLAGQNET 158 (326)
T ss_pred HHHHHhcCC----CCCEEEEEEcCeeCCCCccHHHHHHHH----cC--CCceEeecCCcHHHHHHcCCCcEEEEecCCHH
Confidence 76554 432 233567777777553222222222210 00 01244556665443333222333344455666
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcCC--CHHHHH
Q 022170 145 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC-----------------NNLTMAVSMLGVSEALTLGQSLGI--SASTLT 205 (301)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~-----------------~N~~~~~~~~~~~E~~~l~~~~G~--~~~~~~ 205 (301)
..+.+..+|+.-+.++....++-.....|++ .|.......+++.|+..++++.|. ++++++
T Consensus 159 ~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~ 238 (326)
T PRK14620 159 LGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLI 238 (326)
T ss_pred HHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcchhh
Confidence 5666767766555444444343222233322 366666788999999999999987 899997
Q ss_pred HHHhhcC----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 206 KILNSSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 206 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
++.+.+. +.+..++++..+..+..+.+..+.....-+.-++...++.+.++++++|+++|+.+.+++++
T Consensus 239 gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~------- 311 (326)
T PRK14620 239 GPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLL------- 311 (326)
T ss_pred ccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------
Confidence 5444432 22223344332222222222211111112234566777899999999999999999999987
Q ss_pred CCCCchHHHHHHH
Q 022170 282 HDSKDFSCVFQHY 294 (301)
Q Consensus 282 ~g~~d~~~~~~~~ 294 (301)
+++.+...+++.+
T Consensus 312 ~~~~~~~~~~~~~ 324 (326)
T PRK14620 312 YENISLEKTISVI 324 (326)
T ss_pred hCCCCHHHHHHHH
Confidence 3455666655544
No 47
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=1.5e-16 Score=142.06 Aligned_cols=185 Identities=19% Similarity=0.231 Sum_probs=126.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----C--------------CCCCCCHHHHHhcCCEEEEecCCCccch
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----G--------------VPTKETPFEVAEASDVVITMLPSSSHQV 61 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g--------------~~~~~s~~e~~~~adiVi~~vp~~~~~~ 61 (301)
||.+||..|+++||+|++||+++++.+.+.+. + +..++++.+++++||+||+|+|++.+..
T Consensus 15 mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~ 94 (311)
T PRK06130 15 MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELK 94 (311)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEEEeccCcHHHH
Confidence 89999999999999999999999888766541 2 2345678888899999999999775413
Q ss_pred hhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC
Q 022170 62 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 141 (301)
Q Consensus 62 ~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg 141 (301)
..++.....++ .++ ++|.++|..+. ..++++.+.. .....+.++.++|..+ .+..++.|
T Consensus 95 ~~v~~~l~~~~-----~~~-~ii~s~tsg~~-~~~l~~~~~~------~~~~ig~h~~~p~~~~--------~l~~i~~g 153 (311)
T PRK06130 95 RDVFARLDGLC-----DPD-TIFATNTSGLP-ITAIAQAVTR------PERFVGTHFFTPADVI--------PLVEVVRG 153 (311)
T ss_pred HHHHHHHHHhC-----CCC-cEEEECCCCCC-HHHHHhhcCC------cccEEEEccCCCCccC--------ceEEEeCC
Confidence 44554433333 233 34444443333 3355555432 1101124444444322 23445555
Q ss_pred ---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 022170 142 ---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 213 (301)
Q Consensus 142 ---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~ 213 (301)
+++.++.+.++++.+|+.++++++...+. +++|++. ..++|++.++++.|++++++.+++..+.+
T Consensus 154 ~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~~~~~~g 221 (311)
T PRK06130 154 DKTSPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRIQH----ALAREAISLLEKGVASAEDIDEVVKWSLG 221 (311)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 68899999999999999999997532333 7778765 67899999999999999999999987654
No 48
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.71 E-value=3.4e-16 Score=142.61 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=135.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|..|.++||+|++|||++. +++++++.+||+||+|+|.+. ..+++.+... + .++
T Consensus 110 mG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~--~~~~~~~l~~-l-----~~~ 168 (374)
T PRK11199 110 LGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL--TEEVIARLPP-L-----PED 168 (374)
T ss_pred hhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH--HHHHHHHHhC-C-----CCC
Confidence 899999999999999999998631 356778889999999999765 5666654333 2 367
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccceEEEecC-CHHHHHHHHHHHHhcCC
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGK 158 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~l~~~~gg-~~~~~~~~~~ll~~~~~ 158 (301)
++|+|+|++++.....+.+... ..|+ .+|++|++.....+..++++++ +++.++.+.++++.+|.
T Consensus 169 ~iv~Dv~SvK~~~~~~~~~~~~-------------~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~ 235 (374)
T PRK11199 169 CILVDLTSVKNAPLQAMLAAHS-------------GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGA 235 (374)
T ss_pred cEEEECCCccHHHHHHHHHhCC-------------CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCC
Confidence 8999999999887777765432 2466 8899998776667777888877 66788999999999999
Q ss_pred CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022170 159 NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 206 (301)
Q Consensus 159 ~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~ 206 (301)
+++++++.+....+++++.+ .++..++++..+++ .+.+.+.+.+
T Consensus 236 ~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 236 RLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred EEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 99999999999999999833 67777888888877 7888777644
No 49
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.71 E-value=8.6e-16 Score=134.80 Aligned_cols=184 Identities=16% Similarity=0.246 Sum_probs=135.7
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCC-CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~-~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+||.+|.++|+ +|++|||++++.+.+.+.|+. .+.++.++. ++|+||+|+|.+. +.+++.+... +
T Consensus 11 mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~--~~~~~~~l~~-l----- 81 (275)
T PRK08507 11 MGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA--IIEILPKLLD-I----- 81 (275)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH--HHHHHHHHhc-c-----
Confidence 79999999999996 788999999999888887764 455777765 5999999999654 6777755433 3
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec-ccCCC----HHHhh----ccceEEEec---CCHHH
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGG----VLAAE----AGTLTFMVG---GSEDA 145 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~----~~~a~----~g~l~~~~g---g~~~~ 145 (301)
.++++|+|++++.+...+.+.+.. +..|+.+ |+.|+ |..+. .|..+++++ ++++.
T Consensus 82 ~~~~iv~d~gs~k~~i~~~~~~~~-------------~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~ 148 (275)
T PRK08507 82 KENTTIIDLGSTKAKIIESVPKHI-------------RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKH 148 (275)
T ss_pred CCCCEEEECccchHHHHHHHHHhc-------------CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHH
Confidence 246799999888777665554331 1356776 98874 44332 577677776 46778
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 146 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
++.++++++.+|.+++++++.+....+++++|+.. ....++.+++. .+.+.+.+.++.+.+
T Consensus 149 ~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~~~~~~~~~~~~~g 209 (275)
T PRK08507 149 QERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KEEDERNIFDLAGGG 209 (275)
T ss_pred HHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hcCChHHHHhhcccc
Confidence 89999999999999999999999999999999976 44445555442 266666666655543
No 50
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.68 E-value=1.7e-15 Score=131.16 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=106.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhH-----HHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVM-----KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~-----~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|.+||++|+++||+|++|||++++. +.+.+.|+..++++.++++++|+||+|+|++.+ +++|+. +++++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aa-V~eVl~---GLaa~-- 105 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKG-TFSIAR---TIIEH-- 105 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHH-HHHHHH---HHHhc--
Confidence 7899999999999999999987765 458888999999999999999999999999887 889873 45554
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCc-eEEecccCCCHHHhhccceEEEec--------CCHHHHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP-VMLDAPVSGGVLAAEAGTLTFMVG--------GSEDAYQ 147 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~pv~g~~~~a~~g~l~~~~g--------g~~~~~~ 147 (301)
..+|+++||+||++|.+..++-+..-+.+- +. .++ .|..+.|=+.+.+. .++..| .+++..+
T Consensus 106 L~~GaIVID~STIsP~t~~~~~e~~l~~~r-~d----~~v~s~HP~~vP~~~~~~----~~~~~~~~~~~~~~A~ee~i~ 176 (341)
T TIGR01724 106 VPENAVICNTCTVSPVVLYYSLEKILRLKR-TD----VGISSMHPAAVPGTPQHG----HYVIGGKPTAGKEMATEEQIS 176 (341)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHhhcCc-cc----cCeeccCCCCCCCCCCCc----eeeeccccccccccCCHHHHH
Confidence 357899999999999999888776322100 01 112 23333333333220 111111 2577888
Q ss_pred HHHHHHHhcCCCeEee
Q 022170 148 AAKPLFLSMGKNTIYC 163 (301)
Q Consensus 148 ~~~~ll~~~~~~~~~~ 163 (301)
++.++.+..++.++.+
T Consensus 177 ~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 177 KCVELAKSTGKKAYVV 192 (341)
T ss_pred HHHHHHHHhCCCeeec
Confidence 8999999999887766
No 51
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.67 E-value=1.2e-15 Score=134.03 Aligned_cols=166 Identities=15% Similarity=0.164 Sum_probs=123.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.+||..|.++||+|++|||+++..+.+.+.|.. ...+..+.++++|+||+|+|.+. +.+++.+....+ .+
T Consensus 11 mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~--~~~~~~~l~~~l-----~~ 83 (279)
T PRK07417 11 IGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL--LLPPSEQLIPAL-----PP 83 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH--HHHHHHHHHHhC-----CC
Confidence 79999999999999999999999999888887753 23333457789999999999654 566665432222 35
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHH-Hhh-------ccceEEEe---cCCHHHHH
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL-AAE-------AGTLTFMV---GGSEDAYQ 147 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~-~a~-------~g~l~~~~---gg~~~~~~ 147 (301)
+.+++|++++++...+.+.+.. ..|+. .|++|++. ... .+...+++ +++++.++
T Consensus 84 ~~ii~d~~Svk~~~~~~~~~~~--------------~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~ 149 (279)
T PRK07417 84 EAIVTDVGSVKAPIVEAWEKLH--------------PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALA 149 (279)
T ss_pred CcEEEeCcchHHHHHHHHHHhh--------------CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHH
Confidence 6799999999887765554321 24666 69888762 222 34334444 24788899
Q ss_pred HHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHH
Q 022170 148 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGV 187 (301)
Q Consensus 148 ~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~ 187 (301)
.++++++.+|.+++++++.+....+++++|+.......++
T Consensus 150 ~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~ 189 (279)
T PRK07417 150 IVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALI 189 (279)
T ss_pred HHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHH
Confidence 9999999999999999999999999999998876654443
No 52
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.67 E-value=1.4e-15 Score=134.83 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=127.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHH-----------HHhCC------------CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG------------VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~-----------l~~~g------------~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||.+||.+|+++|++|++||+++++.+. +.+.| .....+..+++++||+||+|+|++
T Consensus 15 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~aD~Vieav~e~ 94 (295)
T PLN02545 15 MGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDADFIIEAIVES 94 (295)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCCCEEEEcCccC
Confidence 8999999999999999999999988753 33332 122233346789999999999988
Q ss_pred ccchhhhhcCCCccccCCCCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceE
Q 022170 58 SHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT 136 (301)
Q Consensus 58 ~~~~~~v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~ 136 (301)
.+ ++..+.+. +.+. ..++.+++ ++||+++.+..+. +.. .....+++|+++|..+ .++
T Consensus 95 ~~-~k~~v~~~--l~~~--~~~~~il~s~tS~i~~~~l~~~---~~~------~~r~~g~h~~~pp~~~--------~lv 152 (295)
T PLN02545 95 ED-LKKKLFSE--LDRI--CKPSAILASNTSSISITRLASA---TQR------PQQVIGMHFMNPPPIM--------KLV 152 (295)
T ss_pred HH-HHHHHHHH--HHhh--CCCCcEEEECCCCCCHHHHHhh---cCC------CcceEEEeccCCcccC--------ceE
Confidence 87 77665432 2221 23445664 8899987754443 221 1111237888888764 234
Q ss_pred EEec---CCHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 137 FMVG---GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 137 ~~~g---g~~~~~~~~~~ll~~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
.++. ++++.+++++++|+.+|+.++++++ .| .++++++. ..++|++.+.+....+++++-.++..+.
T Consensus 153 eiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~----~~~~ea~~~~~~gv~~~~~iD~~~~~g~ 223 (295)
T PLN02545 153 EIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----FIVNRILM----PMINEAFYALYTGVASKEDIDTGMKLGT 223 (295)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 5554 4889999999999999999999886 44 24555555 5679999999988889999987776554
No 53
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.65 E-value=1.9e-15 Score=133.83 Aligned_cols=182 Identities=19% Similarity=0.195 Sum_probs=125.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.+||.+|+++||+|++||++++.++.+.+ .| ++.+++++ .+++||+||+|+|+
T Consensus 15 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aD~Vieavpe 93 (292)
T PRK07530 15 MGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLADCDLVIEAATE 93 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcCCCEEEEcCcC
Confidence 8999999999999999999999998776432 23 34556664 57899999999998
Q ss_pred Cccchhhhh-cCCCccccCCCCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhcc
Q 022170 57 SSHQVLDVY-NGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAG 133 (301)
Q Consensus 57 ~~~~~~~v~-~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g 133 (301)
+.+ ++..+ .+....+ .++++++ ++||+.+. .+++.+.. .....+++|++ +|+....
T Consensus 94 ~~~-~k~~~~~~l~~~~-----~~~~ii~s~ts~~~~s---~la~~~~~------~~r~~g~h~~~p~~~~~~v------ 152 (292)
T PRK07530 94 DET-VKRKIFAQLCPVL-----KPEAILATNTSSISIT---RLASATDR------PERFIGIHFMNPVPVMKLV------ 152 (292)
T ss_pred CHH-HHHHHHHHHHhhC-----CCCcEEEEcCCCCCHH---HHHhhcCC------cccEEEeeccCCcccCceE------
Confidence 765 55544 3322222 3455665 77777765 45555431 11112367777 3433221
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 134 TLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 134 ~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
.+....+++++.++++.++++.+++.++++++.+ -+++++++. ..++|++.+.++.-.+++++-.++..+.
T Consensus 153 ei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~~----~~~~ea~~~~~~g~~~~~~iD~~~~~g~ 223 (292)
T PRK07530 153 ELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRILL----PMINEAIYTLYEGVGSVEAIDTAMKLGA 223 (292)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHHH----HHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 1112235789999999999999999999998754 566677766 5679999998885558999888876553
No 54
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.63 E-value=2.2e-14 Score=133.20 Aligned_cols=187 Identities=18% Similarity=0.237 Sum_probs=138.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH-hCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~-~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.++|..|.++||+|++|+|++++...+. +.|+..+.++.+++.++|+||+|+|.+. +.+++....+.+ .+
T Consensus 12 mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~--~~~vl~~l~~~l-----~~ 84 (437)
T PRK08655 12 LGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINV--TEDVIKEVAPHV-----KE 84 (437)
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHH--HHHHHHHHHhhC-----CC
Confidence 789999999999999999999998865444 4577777788899999999999999643 677775533322 35
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec-ccCCCHHHhhccceEEEecC---CHHHHHHHHHHHHh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLS 155 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~ 155 (301)
+++++|++++.+...+.+.+.++. +..|+.+ |++|.......+...+++.+ +++.++.++++|+.
T Consensus 85 ~~iViDvsSvK~~~~~~l~~~~~~-----------~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~ 153 (437)
T PRK08655 85 GSLLMDVTSVKERPVEAMEEYAPE-----------GVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEK 153 (437)
T ss_pred CCEEEEcccccHHHHHHHHHhcCC-----------CCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 689999999998888877766532 2578876 99886555566777777765 57788999999999
Q ss_pred cCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022170 156 MGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 209 (301)
Q Consensus 156 ~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 209 (301)
+|.+++++++...... +.+.....++..++.+..+ ++.|.+.++...+.+
T Consensus 154 ~G~~v~~~~~e~HD~~---~a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 154 EGARVIVTSPEEHDRI---MSVVQGLTHFAYISIASTL-KRLGVDIKESRKFAS 203 (437)
T ss_pred cCCEEEECCHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhhcC
Confidence 9999988876544333 3444444455555555544 667999877654443
No 55
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.61 E-value=1.7e-14 Score=127.00 Aligned_cols=242 Identities=15% Similarity=0.065 Sum_probs=154.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHH-----------HHhCCC-------------CCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMGV-------------PTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~-----------l~~~g~-------------~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.+||.+|+++||+|++||++++..+. +.+.|. +.++++ +.+++||+||.|+|+
T Consensus 16 mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~d~ViEav~E 94 (286)
T PRK07819 16 MGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADRQLVIEAVVE 94 (286)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCCCEEEEeccc
Confidence 8999999999999999999999998776 444442 256777 567999999999999
Q ss_pred CccchhhhhcCCCccccCCCC-CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec-ccCCCHHHhhccc
Q 022170 57 SSHQVLDVYNGPNGLLQGGNS-VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~~v~~~~~~~l~~~~~-~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~~~~a~~g~ 134 (301)
+.+ ++..+++. ++.. . +++.+++..|+..|.+.... .... ..+..+.||+++ |+++.. +
T Consensus 95 ~~~-~K~~l~~~---l~~~-~~~~~~il~snTS~~~~~~la~--~~~~------~~r~~g~hf~~P~~~~~lv------E 155 (286)
T PRK07819 95 DEA-VKTEIFAE---LDKV-VTDPDAVLASNTSSIPIMKLAA--ATKR------PGRVLGLHFFNPVPVLPLV------E 155 (286)
T ss_pred CHH-HHHHHHHH---HHHh-hCCCCcEEEECCCCCCHHHHHh--hcCC------CccEEEEecCCCcccCceE------E
Confidence 987 88776542 2211 2 45677877777666654443 2221 121223678874 444433 4
Q ss_pred eEEEecCCHHHHHHHHHHHH-hcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 135 LTFMVGGSEDAYQAAKPLFL-SMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 135 l~~~~gg~~~~~~~~~~ll~-~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
++...++++++++++.+++. .+++.++.+++ +| ... |-+ ....++|++.+.++...+++++-.++..+.
T Consensus 156 lv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pG--fi~----nRi---~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~ 226 (286)
T PRK07819 156 LVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSG--FVV----NAL---LVPYLLSAIRMVESGFATAEDIDKAMVLGC 226 (286)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCC--hHH----HHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 45555679999999999988 59999999976 43 222 222 236679999999887788999988887654
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHCCCCCCch
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE-VGVDCPLTSQAQDIYAKLCENGHDSKDF 287 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~-~g~~~p~~~~~~~~~~~a~~~g~g~~d~ 287 (301)
+.. .+|.. . -| ...++...+-++.+.+...+ .-.+.|+++...+.-+...+.|.|..||
T Consensus 227 G~p-----~Gpf~------~--~D---~~Gld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 227 AHP-----MGPLR------L--SD---LVGLDTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred CCC-----CCHHH------H--HH---HhccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 321 11110 0 01 12345555554444332222 1234566665555555566667777665
No 56
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.58 E-value=1.1e-14 Score=128.93 Aligned_cols=183 Identities=17% Similarity=0.222 Sum_probs=123.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh--------------CC-------------CCCCCCHHHHHhcCCEEEEe
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--------------MG-------------VPTKETPFEVAEASDVVITM 53 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~--------------~g-------------~~~~~s~~e~~~~adiVi~~ 53 (301)
||.+||..|+++||+|++||++++.++...+ .| +...++. +++++||+||.|
T Consensus 14 mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViea 92 (291)
T PRK06035 14 MGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESLSDADFIVEA 92 (291)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHhCCCCEEEEc
Confidence 8999999999999999999999988764321 12 1233445 577899999999
Q ss_pred cCCCccchhh-hhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhh
Q 022170 54 LPSSSHQVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAE 131 (301)
Q Consensus 54 vp~~~~~~~~-v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~ 131 (301)
+|++.. ++. ++......+ +++++++ |+++.....++++.+.. ..+..+.||++ +|+.+.. ...
T Consensus 93 v~e~~~-~k~~~~~~l~~~~-----~~~~il~--S~tsg~~~~~la~~~~~------~~r~ig~hf~~P~~~~~~v-Ev~ 157 (291)
T PRK06035 93 VPEKLD-LKRKVFAELERNV-----SPETIIA--SNTSGIMIAEIATALER------KDRFIGMHWFNPAPVMKLI-EVV 157 (291)
T ss_pred CcCcHH-HHHHHHHHHHhhC-----CCCeEEE--EcCCCCCHHHHHhhcCC------cccEEEEecCCCcccCccE-EEe
Confidence 998764 444 443333332 3445554 33333444566665532 11122467777 4455432 222
Q ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 132 AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 132 ~g~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
.+.. .+++.++++.++++.+++.++++++.+.....|+++|+ ++|++.+.+..-.+++++-.++..+
T Consensus 158 ~g~~-----T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 158 RAAL-----TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEIGIATIKDIDEMCKLA 224 (291)
T ss_pred CCCC-----CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHcCCCCHHHHHHHHhhc
Confidence 3332 27899999999999999999999987777777777554 4688888877557899998887665
Q ss_pred C
Q 022170 212 S 212 (301)
Q Consensus 212 ~ 212 (301)
.
T Consensus 225 ~ 225 (291)
T PRK06035 225 F 225 (291)
T ss_pred C
Confidence 4
No 57
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.58 E-value=1.9e-13 Score=121.42 Aligned_cols=188 Identities=13% Similarity=0.100 Sum_probs=129.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------C---------CCCCCCCHHHHHhcCCEEEEecCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M---------GVPTKETPFEVAEASDVVITMLPSSSHQ 60 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~---------g~~~~~s~~e~~~~adiVi~~vp~~~~~ 60 (301)
||.+||.+|+.+||+|++||++++..+.+.+ . .+..++++++++++||+|+.|+|++.+
T Consensus 18 MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlViEavpE~l~- 96 (321)
T PRK07066 18 IGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQESAPEREA- 96 (321)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEEECCcCCHH-
Confidence 8999999999999999999999887654322 2 235667899999999999999999887
Q ss_pred hhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEec
Q 022170 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 140 (301)
Q Consensus 61 ~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~g 140 (301)
++..++. .+.+. .+++ .++.+||+ +....++++.+.. +.+..+.||+.+|-.-. ++=++.
T Consensus 97 vK~~lf~--~l~~~--~~~~-aIlaSnTS-~l~~s~la~~~~~------p~R~~g~HffnP~~~~p--------LVEVv~ 156 (321)
T PRK07066 97 LKLELHE--RISRA--AKPD-AIIASSTS-GLLPTDFYARATH------PERCVVGHPFNPVYLLP--------LVEVLG 156 (321)
T ss_pred HHHHHHH--HHHHh--CCCC-eEEEECCC-ccCHHHHHHhcCC------cccEEEEecCCccccCc--------eEEEeC
Confidence 7777653 22221 2344 57766665 4445566665542 22222356665553322 222223
Q ss_pred C---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcc
Q 022170 141 G---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW 216 (301)
Q Consensus 141 g---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~ 216 (301)
| ++++++.+..+++.+|+.++.+...-.+... |=+. ...++|++.+.+....+++++-.++..|.+..|
T Consensus 157 g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~----NRl~---~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~ 228 (321)
T PRK07066 157 GERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIA----DRLL---EALWREALHLVNEGVATTGEIDDAIRFGAGIRW 228 (321)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHH----HHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCc
Confidence 2 7899999999999999988888532233333 3333 366799999999988999999999887765443
No 58
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.56 E-value=8.9e-14 Score=122.78 Aligned_cols=184 Identities=14% Similarity=0.166 Sum_probs=122.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------------CCCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------------GVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------------------------g~~~~~s~~e~~~~adiVi~~vp 55 (301)
||.++|..|+++||+|++||++++.++.+.+. ++..++++++++++||+||.|+|
T Consensus 14 mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieavp 93 (287)
T PRK08293 14 LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVP 93 (287)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEecc
Confidence 89999999999999999999999876655321 23356788889999999999999
Q ss_pred CCccchhhhhcCCCccccCCCCCCCeEE-EEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 56 SSSHQVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 56 ~~~~~~~~v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
++.+..++++.+....+ ++++++ .++||..+.. +++.+.. +.+..+.||..+|. ...
T Consensus 94 e~~~~k~~~~~~l~~~~-----~~~~ii~sntSt~~~~~---~~~~~~~------~~r~vg~Hf~~p~~--------~~~ 151 (287)
T PRK08293 94 EDPEIKGDFYEELAKVA-----PEKTIFATNSSTLLPSQ---FAEATGR------PEKFLALHFANEIW--------KNN 151 (287)
T ss_pred CCHHHHHHHHHHHHhhC-----CCCCEEEECcccCCHHH---HHhhcCC------cccEEEEcCCCCCC--------cCC
Confidence 87541344454333332 344555 5667776653 3333321 11111234433322 122
Q ss_pred eEEEe---cCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 135 LTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 135 l~~~~---gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
+..++ ..++++++.+..+++.+++.++.+.+...+..+.-+. ...++|++.+.+....+++++-.++..+
T Consensus 152 lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~-------~~~~~ea~~l~~~g~a~~~~iD~a~~~~ 224 (287)
T PRK08293 152 TAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLL-------VPFLSAALALWAKGVADPETIDKTWMIA 224 (287)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHH-------HHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 34444 3478999999999999999988886434444443332 2556999999998778999998888766
Q ss_pred CC
Q 022170 212 SA 213 (301)
Q Consensus 212 ~~ 213 (301)
.+
T Consensus 225 ~g 226 (287)
T PRK08293 225 TG 226 (287)
T ss_pred cC
Confidence 43
No 59
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.52 E-value=5.8e-13 Score=121.09 Aligned_cols=187 Identities=12% Similarity=0.140 Sum_probs=130.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC----CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~----~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||++||..|.++||+|.+|+++++..+.....+.. ..+++.+++++||+||+|+|.+ . +.+++.+.... .
T Consensus 11 iG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~-~~~vl~~l~~~--~-- 84 (359)
T PRK06545 11 IGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-A-TAALLAELADL--E-- 84 (359)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-H-HHHHHHHHhhc--C--
Confidence 89999999999999999999988776554444332 2356788889999999999964 4 78888654321 0
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHH--------HhhccceEEEec---CCHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL--------AAEAGTLTFMVG---GSED 144 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~--------~a~~g~l~~~~g---g~~~ 144 (301)
..++.+|.|+++++....+.+.+.... ...|+. .|+.|++. ....+..++++. .+++
T Consensus 85 l~~~~ivtDv~SvK~~i~~~~~~~~~~-----------~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~ 153 (359)
T PRK06545 85 LKPGVIVTDVGSVKGAILAEAEALLGD-----------LIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPD 153 (359)
T ss_pred CCCCcEEEeCccccHHHHHHHHHhcCC-----------CCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHH
Confidence 135689999999998877776654321 257887 69888642 222455466665 4788
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 145 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
.++.++++++.+|..++++.+......+.+++..-..+. + .|+...+.+.+....+...+
T Consensus 154 ~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia-----~--al~~~~~~~~~~~~~la~~g 213 (359)
T PRK06545 154 AVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILA-----S--SLAARLAGEHPLALRLAAGG 213 (359)
T ss_pred HHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHH-----H--HHHHhhccCchHHHhhhccc
Confidence 899999999999999988987666666666655544332 2 22555566666555555543
No 60
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.47 E-value=8.8e-13 Score=116.19 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=117.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHH-----------HHHhCC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMK-----------MFSDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~-----------~l~~~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.++|..|+++|++|++||+++++++ .+.+.| +..+++.+ .+++||+||+|+|.
T Consensus 14 mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~aDlVi~av~e 92 (282)
T PRK05808 14 MGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDADLVIEAATE 92 (282)
T ss_pred HHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeeeecccc
Confidence 799999999999999999999999874 334444 23355654 47899999999997
Q ss_pred Cccchh-hhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecc-cCCCHHHhhccc
Q 022170 57 SSHQVL-DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP-VSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~-~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p-v~g~~~~a~~g~ 134 (301)
+.. ++ +++......+ ++++++ .++|.+.... ++++.+.. +.+..+.+|..++ +.... ..
T Consensus 93 ~~~-~k~~~~~~l~~~~-----~~~~il-~s~ts~~~~~-~la~~~~~------~~r~ig~h~~~P~~~~~~v-ev---- 153 (282)
T PRK05808 93 NMD-LKKKIFAQLDEIA-----KPEAIL-ATNTSSLSIT-ELAAATKR------PDKVIGMHFFNPVPVMKLV-EI---- 153 (282)
T ss_pred cHH-HHHHHHHHHHhhC-----CCCcEE-EECCCCCCHH-HHHHhhCC------CcceEEeeccCCcccCccE-EE----
Confidence 655 55 5554433333 344444 3333333322 55555532 1222235666533 32221 11
Q ss_pred eEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 135 LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 135 l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
.--.+.+++.++.+.++++.+|+.++++++ ..+. +.|-+. ...++|++.+.++.-.+++++-.++..+.
T Consensus 154 -~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d-~~g~----i~~Ri~---~~~~~ea~~~~~~gv~~~~diD~~~~~g~ 222 (282)
T PRK05808 154 -IRGLATSDATHEAVEALAKKIGKTPVEVKN-APGF----VVNRIL---IPMINEAIFVLAEGVATAEDIDEGMKLGC 222 (282)
T ss_pred -eCCCCCCHHHHHHHHHHHHHcCCeeEEecC-ccCh----HHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 111245899999999999999999999975 2222 223222 36679999999887788999988876553
No 61
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.45 E-value=5.5e-12 Score=112.46 Aligned_cols=162 Identities=13% Similarity=0.198 Sum_probs=117.2
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCC--CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGV--PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~--~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..+|..|.+.|+ +|++|||++++.+.+.+.|. ..+.++.+++.++|+||+|+|.+. ..+++......+
T Consensus 17 mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~--~~~v~~~l~~~l---- 90 (307)
T PRK07502 17 IGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA--SGAVAAEIAPHL---- 90 (307)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH--HHHHHHHHHhhC----
Confidence 78999999999995 89999999999888887775 345678888899999999999644 666665432222
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec-ccCCCHH----Hh----hccceEEEe---cCCHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVL----AA----EAGTLTFMV---GGSED 144 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~~~----~a----~~g~l~~~~---gg~~~ 144 (301)
.++.+++|++++.+...+.+.+.... ++.|+.+ |+.|++. .+ ..|..++++ +++++
T Consensus 91 -~~~~iv~dvgs~k~~~~~~~~~~~~~-----------~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~ 158 (307)
T PRK07502 91 -KPGAIVTDVGSVKASVIAAMAPHLPE-----------GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPA 158 (307)
T ss_pred -CCCCEEEeCccchHHHHHHHHHhCCC-----------CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHH
Confidence 34578999999888777666554321 2578876 8887542 11 133334444 56788
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH
Q 022170 145 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180 (301)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~ 180 (301)
.++.+.++++.+|.+++++++......+-++...-.
T Consensus 159 ~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph 194 (307)
T PRK07502 159 AVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPH 194 (307)
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHH
Confidence 999999999999999999887555555555555444
No 62
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.39 E-value=4.5e-11 Score=104.47 Aligned_cols=243 Identities=16% Similarity=0.193 Sum_probs=146.0
Q ss_pred CcHHHHHHHHhCC---CeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAG---YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G---~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..++..|.++| ++|.+|+|++++.+.+.+. |+..+.+..+++..+|+||+|+|. .. +++++......+
T Consensus 13 mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~-~~~v~~~l~~~~---- 86 (267)
T PRK11880 13 MASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QV-MEEVLSELKGQL---- 86 (267)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HH-HHHHHHHHHhhc----
Confidence 7899999999999 7899999999999888775 777778888888999999999995 44 888886532211
Q ss_pred CCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhccceEEEecC--CHHHHHHHHHH
Q 022170 77 SVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPL 152 (301)
Q Consensus 77 ~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~l 152 (301)
+++||.+ ++++.+ .+.+.+.. +.+++. .|. .|.....+...+..+. +++.++.++.+
T Consensus 87 ---~~~vvs~~~gi~~~---~l~~~~~~-----------~~~iv~~~P~--~p~~~~~~~~~i~~~~~~~~~~~~~v~~l 147 (267)
T PRK11880 87 ---DKLVVSIAAGVTLA---RLERLLGA-----------DLPVVRAMPN--TPALVGAGMTALTANALVSAEDRELVENL 147 (267)
T ss_pred ---CCEEEEecCCCCHH---HHHHhcCC-----------CCcEEEecCC--chHHHcCceEEEecCCCCCHHHHHHHHHH
Confidence 2455555 445433 33333321 122332 232 2333333432344443 78899999999
Q ss_pred HHhcCCCeEeeCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCccccccCCCCCCcccC
Q 022170 153 FLSMGKNTIYCGGAGNGAAA-KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEG 230 (301)
Q Consensus 153 l~~~~~~~~~~g~~g~a~~~-k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 230 (301)
|+.+|. ++++.+...-... -+..+.-. ....++..+...+.+.|+++++..+++.... +........+..+..+
T Consensus 148 ~~~lG~-~~~~~~e~~~d~~~a~~~~~pa-~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l-- 223 (267)
T PRK11880 148 LSAFGK-VVWVDDEKQMDAVTAVSGSGPA-YVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAEL-- 223 (267)
T ss_pred HHhCCe-EEEECChHhcchHHHHhcChHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--
Confidence 999996 5566632211111 12222111 1123334444556779999999888876552 1110000000000000
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 231 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 231 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
.++--.++ --....++..++.|++-.+.+++.+.++++.+.+
T Consensus 224 --~~~v~tpg-------G~t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 224 --RDNVTSPG-------GTTIAALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred --HHhCCCCc-------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 00000111 1234667778889999999999999999998764
No 63
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.38 E-value=1.7e-11 Score=106.61 Aligned_cols=176 Identities=15% Similarity=0.144 Sum_probs=120.3
Q ss_pred CcHHHHHHHHhCCCe---EEEEcCChhhHHHHHhC--CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGYK---MAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~~---V~~~dr~~~~~~~l~~~--g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+|++.|.+.|++ +.+|+|++++.+.+.+. +...+.+..++++++|+||+|+| +.. +.+++.+.. +
T Consensus 11 mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~-~~~vl~~l~--~--- 83 (258)
T PRK06476 11 ITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQI-AEEVLRALR--F--- 83 (258)
T ss_pred HHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHH-HHHHHHHhc--c---
Confidence 799999999999864 57899999999888765 46677889999999999999999 555 888876431 1
Q ss_pred CCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHh
Q 022170 76 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLS 155 (301)
Q Consensus 76 ~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 155 (301)
.+++++|+++. +.+...+.+.+.. . ...+...|... .+.....+.+++++ +.++++|+.
T Consensus 84 --~~~~~vis~~a--g~~~~~l~~~~~~------~----~~~~r~~P~~~---~a~~~g~t~~~~~~----~~~~~l~~~ 142 (258)
T PRK06476 84 --RPGQTVISVIA--ATDRAALLEWIGH------D----VKLVRAIPLPF---VAERKGVTAIYPPD----PFVAALFDA 142 (258)
T ss_pred --CCCCEEEEECC--CCCHHHHHHHhCC------C----CCEEEECCCCh---hhhCCCCeEecCCH----HHHHHHHHh
Confidence 24567776543 2333455444432 0 12456677632 22222335566654 579999999
Q ss_pred cCCCeEeeCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 156 MGKNTIYCGGAGNGAAAKICNNL-----TMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 156 ~~~~~~~~g~~g~a~~~k~~~N~-----~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
+|..++ +++. |..+++ ..+.....+.++..++++.|+|+++..+++...
T Consensus 143 lG~~~~-~~~e------~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~ 196 (258)
T PRK06476 143 LGTAVE-CDSE------EEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPL 196 (258)
T ss_pred cCCcEE-ECCh------HhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 998665 5532 122222 334444577888899999999999998888754
No 64
>PRK07680 late competence protein ComER; Validated
Probab=99.38 E-value=3.5e-11 Score=105.47 Aligned_cols=185 Identities=14% Similarity=0.166 Sum_probs=118.6
Q ss_pred CcHHHHHHHHhCCC----eEEEEcCChhhHHHHHhC--CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~~--g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||.+|+..|.++|+ +|++|+|++++.+.+.+. |+..+.+..+++..+|+||+|+| +.. +.+++.+..+.+
T Consensus 11 mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~-~~~vl~~l~~~l-- 86 (273)
T PRK07680 11 MGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLD-IYPLLQKLAPHL-- 86 (273)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHH-HHHHHHHHHhhc--
Confidence 79999999999994 799999999998887764 66677788898999999999999 455 888886543322
Q ss_pred CCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEec--CCHHHHHHHHHH
Q 022170 75 GNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSEDAYQAAKPL 152 (301)
Q Consensus 75 ~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~g--g~~~~~~~~~~l 152 (301)
.++++||++++.. +.+.+.+.+.. . .+++++. .+.....|...+..| .+++.++.++++
T Consensus 87 ---~~~~~iis~~ag~--~~~~L~~~~~~------~----~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~~l 147 (273)
T PRK07680 87 ---TDEHCLVSITSPI--SVEQLETLVPC------Q----VARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLERL 147 (273)
T ss_pred ---CCCCEEEEECCCC--CHHHHHHHcCC------C----EEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHHHH
Confidence 2456888887633 24455444321 0 1344432 334455677555565 356778999999
Q ss_pred HHhcCCCeEeeCCc-chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 153 FLSMGKNTIYCGGA-GNGA-AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 153 l~~~~~~~~~~g~~-g~a~-~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
|+.+|. ++++.+. ..+. .+--+.-.+.+..+..+.++. .++.|++.++..+++...
T Consensus 148 l~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 148 FSNIST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM 205 (273)
T ss_pred HHcCCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence 999995 6666542 1111 111111123323333333322 244899999888876644
No 65
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.37 E-value=6.5e-11 Score=105.44 Aligned_cols=246 Identities=13% Similarity=0.161 Sum_probs=146.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------------CCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------------~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
||..+|..|+++||+|++|+| +++.+.+.+.|.. ..++.++....+|+||+|+|... +++++..
T Consensus 11 iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~~--~~~~~~~ 87 (305)
T PRK12921 11 VGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAYQ--LDAAIPD 87 (305)
T ss_pred HHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecccC--HHHHHHH
Confidence 699999999999999999999 8888888776532 23455666688999999999654 7888765
Q ss_pred CCccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC----C
Q 022170 68 PNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG----S 142 (301)
Q Consensus 68 ~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg----~ 142 (301)
....+ .++++||.. .++... ..+.+.+.... ...++.++.++..++..-...+.-.+.+|. .
T Consensus 88 l~~~~-----~~~~~ii~~~nG~~~~--~~l~~~~~~~~------v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 88 LKPLV-----GEDTVIIPLQNGIGQL--EQLEPYFGRER------VLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred HHhhc-----CCCCEEEEeeCCCChH--HHHHHhCCccc------EEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 44333 233455544 444433 34444443210 001234455554432111111221344443 2
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCC-
Q 022170 143 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLGIS- 200 (301)
Q Consensus 143 ~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~---------------------~~~~~~~~E~~~l~~~~G~~- 200 (301)
.+..+.+..+|...+.++....++-...-.|++.|... ......+.|+..++++.|++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34556777788877766655556777778888877543 34567789999999999986
Q ss_pred -HHHHHHHHhhc---CCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 201 -ASTLTKILNSS---SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 201 -~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
.+.+.+.+..- +.... +.+. +|+..+-. .+..-=...++++++++|+++|..+.++++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~--------sSm~------~D~~~gr~-tEid~i~G~vv~~a~~~gv~~P~~~~l~~~~~~ 299 (305)
T PRK12921 235 RDDVVEEIVKIFAGAPGDMK--------TSML------RDMEKGRP-LEIDHLQGVLLRRARAHGIPTPILDTVYALLKA 299 (305)
T ss_pred ChhHHHHHHHHHhccCCCCC--------cHHH------HHHHcCCc-ccHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 33333333221 11000 0011 11111111 111122357999999999999999999998865
Q ss_pred H
Q 022170 277 L 277 (301)
Q Consensus 277 a 277 (301)
.
T Consensus 300 ~ 300 (305)
T PRK12921 300 Y 300 (305)
T ss_pred H
Confidence 4
No 66
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.36 E-value=4.7e-12 Score=103.79 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=107.2
Q ss_pred CcHHHHHHHHhCCCeEEEEc-CChhhHHHHHhC-CCC-CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHD-VNCNVMKMFSDM-GVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~d-r~~~~~~~l~~~-g~~-~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+||++|++.||+|++-+ |.+++.+...+. +.. ...++.++++.+|+||++||... +.+++.+....
T Consensus 12 iG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a--~~~v~~~l~~~------ 83 (211)
T COG2085 12 IGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA--IPDVLAELRDA------ 83 (211)
T ss_pred HHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH--HHhHHHHHHHH------
Confidence 69999999999999999885 455555554443 332 24588899999999999999765 67777654332
Q ss_pred CCCeEEEEeCCC---------------CHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCC
Q 022170 78 VRPQLLIDSSTI---------------DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS 142 (301)
Q Consensus 78 ~~~~ivid~st~---------------~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~ 142 (301)
.+++++||+++- .-+.++.+++.+++..+.+ -++.+.+-.+..........-.+++|-|
T Consensus 84 ~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVk------AFn~i~a~~l~~~~~~~~~~~v~vagDD 157 (211)
T COG2085 84 LGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVK------AFNTIPAAVLADLAKPGGRRDVLVAGDD 157 (211)
T ss_pred hCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhh------hhcccCHHHhccCCCcCCceeEEEecCc
Confidence 247899999884 1244556666665432211 1445554444322222222334455557
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCCcchHHHHH
Q 022170 143 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 173 (301)
Q Consensus 143 ~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k 173 (301)
.++.+.+..+.+.+|..++.+|++..+..+.
T Consensus 158 ~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le 188 (211)
T COG2085 158 AEAKAVVAELAEDIGFRPLDAGPLENARILE 188 (211)
T ss_pred HHHHHHHHHHHHhcCcceeeccccccccccc
Confidence 7899999999999999999999976665554
No 67
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.34 E-value=6.1e-12 Score=103.50 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=86.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------------CCCCCCCHHHHHhcCCEEEEecCCCcc-
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVVITMLPSSSH- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~adiVi~~vp~~~~- 59 (301)
+|.++|..|+++||+|++||.|+++++.+++. ...++++..+++.++|++|+|||++..
T Consensus 11 vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~~ 90 (185)
T PF03721_consen 11 VGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSDE 90 (185)
T ss_dssp THHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBET
T ss_pred chHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEEecCCCccc
Confidence 58999999999999999999999999888753 235667888889999999999998753
Q ss_pred -------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh-
Q 022170 60 -------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE- 131 (301)
Q Consensus 60 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~- 131 (301)
.+.+++.. +.+. ..++++||..||+.|++++++...+.+. ..+...++....+|.+-.+..+.
T Consensus 91 ~~~~Dls~v~~a~~~---i~~~--l~~~~lvV~~STvppGtt~~~~~~ile~----~~~~~~~f~la~~PErl~~G~a~~ 161 (185)
T PF03721_consen 91 DGSPDLSYVESAIES---IAPV--LRPGDLVVIESTVPPGTTEELLKPILEK----RSGKKEDFHLAYSPERLREGRAIE 161 (185)
T ss_dssp TTSBETHHHHHHHHH---HHHH--HCSCEEEEESSSSSTTHHHHHHHHHHHH----HCCTTTCEEEEE------TTSHHH
T ss_pred cCCccHHHHHHHHHH---HHHH--HhhcceEEEccEEEEeeehHhhhhhhhh----hcccccCCeEEECCCccCCCCcch
Confidence 13333333 2222 2357899999999999999766655432 11111357888889775443332
Q ss_pred --ccceEEEecCCHHHH-HHHHH
Q 022170 132 --AGTLTFMVGGSEDAY-QAAKP 151 (301)
Q Consensus 132 --~g~l~~~~gg~~~~~-~~~~~ 151 (301)
...-.++.|.+++.. +++++
T Consensus 162 d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 162 DFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp HHHSSSEEEEEESSHHHHHHHHH
T ss_pred hccCCCEEEEeCCcHHHHHHHhc
Confidence 222245666655433 35554
No 68
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.30 E-value=6.3e-10 Score=95.57 Aligned_cols=223 Identities=13% Similarity=0.164 Sum_probs=154.7
Q ss_pred CeEEEEcCChhhHHHHHhC-------------------CCCCCCCHHHHHhcCCEEEEecCCCcc-------------ch
Q 022170 14 YKMAVHDVNCNVMKMFSDM-------------------GVPTKETPFEVAEASDVVITMLPSSSH-------------QV 61 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~-------------------g~~~~~s~~e~~~~adiVi~~vp~~~~-------------~~ 61 (301)
.+|++.|.+..++..++.. +.-+.++.+.+++.+|+||++|.+|.. .+
T Consensus 27 i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~ 106 (481)
T KOG2666|consen 27 IEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYW 106 (481)
T ss_pred eEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHH
Confidence 3688999998888766543 234557888899999999999988743 11
Q ss_pred hhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhc---cceEEE
Q 022170 62 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA---GTLTFM 138 (301)
Q Consensus 62 ~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~---g~l~~~ 138 (301)
++.... +.+. ....++++.-||+...+++.+...+... ..| ..+..++.|.|-.+.-+.. ..=.++
T Consensus 107 es~ar~---ia~~--s~~~kivvekstvpv~aaesi~~il~~n----~~~--i~fqilsnpeflaegtaikdl~npdrvl 175 (481)
T KOG2666|consen 107 ESAARM---IADV--SVSDKIVVEKSTVPVKAAESIEKILNHN----SKG--IKFQILSNPEFLAEGTAIKDLFNPDRVL 175 (481)
T ss_pred HHHHHH---HHHh--ccCCeEEEeeccccchHHHHHHHHHhcC----CCC--ceeEeccChHHhcccchhhhhcCCceEE
Confidence 222111 1111 2345899999999999999998877531 122 2356677776643322221 111588
Q ss_pred ecCC--HHHHHH---HHHHHHhcC-CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 139 VGGS--EDAYQA---AKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 139 ~gg~--~~~~~~---~~~ll~~~~-~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
+||+ ++-++. +..+++.+- ..-+.....-+++.-|++.|.+.+--+..++-+.++|++.|.|..++..+++..+
T Consensus 176 igg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatgadv~eva~avg~d~ 255 (481)
T KOG2666|consen 176 IGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATGADVSEVAYAVGTDS 255 (481)
T ss_pred ECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCHHHHHHHhcccc
Confidence 8984 444444 445555443 2334445678999999999999999999999999999999999999999888764
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD 263 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~ 263 (301)
-- +++++. -..||...++.||+-.++-+++.+|+|
T Consensus 256 ri---------g~kfl~-------asvgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 256 RI---------GSKFLN-------ASVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred cc---------cHHHhh-------cccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 11 112221 135889999999999999999999976
No 69
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.30 E-value=2e-10 Score=100.39 Aligned_cols=243 Identities=14% Similarity=0.125 Sum_probs=144.7
Q ss_pred CcHHHHHHHHhCCC----eEEEEcCChhhHHHHHh-CCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~-~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+|+..|.++|+ +|++|||++++.+.+.+ .|+..+.+..+++.+||+||+||| |.. +.+++.+....+
T Consensus 13 MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~-~~~vl~~l~~~~--- 87 (272)
T PRK12491 13 MGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDL-YSSVINQIKDQI--- 87 (272)
T ss_pred HHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHH-HHHHHHHHHHhh---
Confidence 89999999999885 69999999999988875 687777888899999999999999 566 899986544333
Q ss_pred CCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC--CHHHHHHHHHH
Q 022170 76 NSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPL 152 (301)
Q Consensus 76 ~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~l 152 (301)
.+++++|+. .+++.+..++ .+... . -.+--.|.. +.....|...+..+. +++..+.++.+
T Consensus 88 --~~~~lvISi~AGi~i~~l~~---~l~~~-----~-----~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~~v~~l 150 (272)
T PRK12491 88 --KNDVIVVTIAAGKSIKSTEN---EFDRK-----L-----KVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIKEVLNI 150 (272)
T ss_pred --cCCcEEEEeCCCCcHHHHHH---hcCCC-----C-----cEEEECCCh--HHHHcCceEEEEeCCCCCHHHHHHHHHH
Confidence 234566655 6777665444 33210 0 011222322 233334543333332 45567889999
Q ss_pred HHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCccccccCCCCCCccc
Q 022170 153 FLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVME 229 (301)
Q Consensus 153 l~~~~~~~~~~g~--~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 229 (301)
|+.+|.. +.+.+ .....++--+.-.+.+..+. .....+.+.|++.++..+++.... |..........-|..
T Consensus 151 f~~~G~~-~~~~E~~~d~~talsgsgPAf~~~~~e---al~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~-- 224 (272)
T PRK12491 151 FNIFGQT-EVVNEKLMDVVTSISGSSPAYVYMFIE---AMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGE-- 224 (272)
T ss_pred HHcCCCE-EEEcHHHhhhHHHhccCcHHHHHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH--
Confidence 9999974 55643 22222222222233332222 233556678999999888877653 111111000000000
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHC
Q 022170 230 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 280 (301)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 280 (301)
+.++--+|+.+ ....++..++.|+.--+.+++.+.++++.+.
T Consensus 225 --l~~~V~sPGGt-------T~~gl~~le~~~~~~~~~~av~aa~~r~~el 266 (272)
T PRK12491 225 --LKDMVCSPGGT-------TIEAVATLEEKGLRTAIISAMKRCTQKSMEM 266 (272)
T ss_pred --HHHhCCCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHH
Confidence 11111233322 2345566677888888888888888887654
No 70
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.29 E-value=2.5e-11 Score=102.91 Aligned_cols=159 Identities=22% Similarity=0.217 Sum_probs=101.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------CCC---CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------GVP---TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------g~~---~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
||++|+..|+++||+|++|+|++++.+.+.+. |.. ...+..++++++|+||+|+|.. . +.+++.+..
T Consensus 12 mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-~-~~~~l~~l~ 89 (219)
T TIGR01915 12 QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-H-VLKTLESLR 89 (219)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-H-HHHHHHHHH
Confidence 78999999999999999999999988776542 221 1246678889999999999954 4 777775433
Q ss_pred ccccCCCCCCCeEEEEeCCCCHH---------------HHHHHHHHHhh-chhhhccCCCCCceEEecccCCCHHHhhcc
Q 022170 70 GLLQGGNSVRPQLLIDSSTIDPQ---------------TSRNISAAVSN-CILKEKKDSWENPVMLDAPVSGGVLAAEAG 133 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~st~~p~---------------~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g 133 (301)
..+ ++++|||+++-.+. .++.+++.+.. ..+ ..-+.++.+.+..++ ....+
T Consensus 90 ~~l------~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~V------Vka~~~~~a~~~~~~-~~~~~ 156 (219)
T TIGR01915 90 DEL------SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRV------VAAFHNLSAVLLQDV-DDEVD 156 (219)
T ss_pred Hhc------cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeE------eeccccCCHHHhcCC-CCCCC
Confidence 222 24789998754321 12444444432 100 001222222223221 11122
Q ss_pred ceEEEecCCHHHHHHHHHHHHhc-CCCeEeeCCcchHHHHHH
Q 022170 134 TLTFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKI 174 (301)
Q Consensus 134 ~l~~~~gg~~~~~~~~~~ll~~~-~~~~~~~g~~g~a~~~k~ 174 (301)
.-.+++|-|+++.+.+..+.+.+ |..++++|++..+..+.-
T Consensus 157 ~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~ 198 (219)
T TIGR01915 157 CDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVES 198 (219)
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHh
Confidence 32455555678888999999999 999999998766655443
No 71
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.26 E-value=2.4e-10 Score=99.28 Aligned_cols=161 Identities=16% Similarity=0.246 Sum_probs=108.9
Q ss_pred HHHHHHhCC--CeEEEEcCChhhHHHHHhCCCCCCC-CHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 5 MASNLMKAG--YKMAVHDVNCNVMKMFSDMGVPTKE-TPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 5 lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g~~~~~-s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
+|+.|.++| ++|++||++++..+...+.|+.... +..+.+.++|+||+|+|-. . +.+++....+.+ .+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~-~~~~l~~~~~~~-----~~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-A-IEDVLEEIAPYL-----KPGA 73 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-H-HHHHHHHHHCGS------TTS
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-H-HHHHHHHhhhhc-----CCCc
Confidence 688899999 6899999999999888888875533 2267889999999999954 4 777876644433 3578
Q ss_pred EEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCH--------HHhhccceEEEecC---CHHHHHHH
Q 022170 82 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV--------LAAEAGTLTFMVGG---SEDAYQAA 149 (301)
Q Consensus 82 ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~--------~~a~~g~l~~~~gg---~~~~~~~~ 149 (301)
+|+|.+++.-.....+.+.... +..|+. .|++|.+ .....|...+++-+ +++.++.+
T Consensus 74 iv~Dv~SvK~~~~~~~~~~~~~-----------~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~ 142 (258)
T PF02153_consen 74 IVTDVGSVKAPIVEAMERLLPE-----------GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELV 142 (258)
T ss_dssp EEEE--S-CHHHHHHHHHHHTS-----------SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhcCc-----------ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHH
Confidence 9999999998888777766542 256665 5888872 22235776777744 45788999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHH
Q 022170 150 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS 183 (301)
Q Consensus 150 ~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~ 183 (301)
+.+++.+|.+++.+.+...=..+-+++.+-....
T Consensus 143 ~~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~a 176 (258)
T PF02153_consen 143 EELWEALGARVVEMDAEEHDRIMAYVSHLPHLLA 176 (258)
T ss_dssp HHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHCCCEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998866555555655555444333
No 72
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.26 E-value=4.2e-10 Score=100.11 Aligned_cols=245 Identities=15% Similarity=0.176 Sum_probs=139.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-----------CCCHHHHHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-----------KETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----------~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
||+.+|..|.++||+|++|+|+++..+.+.+.|... ..++.++ ..+|+||+|+|... +.+++....
T Consensus 11 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~--~~~~~~~l~ 87 (304)
T PRK06522 11 IGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQ--LPAALPSLA 87 (304)
T ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccccc--HHHHHHHHh
Confidence 699999999999999999999988888888777532 4455555 88999999999654 788887654
Q ss_pred ccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCC--HHHhhccceEEEecC-C--H
Q 022170 70 GLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEAGTLTFMVGG-S--E 143 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~--~~~a~~g~l~~~~gg-~--~ 143 (301)
+.+. ++++||.+ .++... +.+.+.+....+ .. ++.+..+-..++ ......+. +.+|. + .
T Consensus 88 ~~l~-----~~~~iv~~~nG~~~~--~~l~~~~~~~~i--~~----~~~~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~ 152 (304)
T PRK06522 88 PLLG-----PDTPVLFLQNGVGHL--EELAAYIGPERV--LG----GVVTHAAELEGPGVVRHTGGGR--LKIGEPDGES 152 (304)
T ss_pred hhcC-----CCCEEEEecCCCCcH--HHHHHhcCcccE--EE----EEEEEeeEecCCCEEEEcCCCC--EEEeCCCCCc
Confidence 4432 33345544 444433 233343322100 00 011111111110 00111233 33343 2 2
Q ss_pred HHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcCCCH-
Q 022170 144 DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT---------------------MAVSMLGVSEALTLGQSLGISA- 201 (301)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~---------------------~~~~~~~~~E~~~l~~~~G~~~- 201 (301)
+..+.+.++|+..+.++....++-...-.|++.|.. .......+.|+..++++.|++.
T Consensus 153 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~ 232 (304)
T PRK06522 153 AAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLS 232 (304)
T ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 335667778887776654444455556666655532 3345677899999999999753
Q ss_pred -HHHHHHHhhc---CCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022170 202 -STLTKILNSS---SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 277 (301)
Q Consensus 202 -~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 277 (301)
+.+.+.+... +.....+ -..++..++..+-+ -=...++++++++|+++|..+.++++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~sS----m~~D~~~gr~tEid-----------~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 297 (304)
T PRK06522 233 VEEVREYVRQVIQKTAANTSS----MLQDLEAGRPTEID-----------AIVGYVLRRGRKHGIPTPLNDALYGLLKAK 297 (304)
T ss_pred hHHHHHHHHHHhhccCCCCch----HHHHHHcCCCcccc-----------hhccHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 4444433321 1110000 01111112211111 123468999999999999999999988665
Q ss_pred H
Q 022170 278 C 278 (301)
Q Consensus 278 ~ 278 (301)
.
T Consensus 298 ~ 298 (304)
T PRK06522 298 E 298 (304)
T ss_pred H
Confidence 3
No 73
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.25 E-value=2.9e-12 Score=102.92 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=92.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||+++|..|+++||+|++|.|+++.++.+++.+ +.++++++++++++|+|++++|. .. .++++.
T Consensus 10 ~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs-~~-~~~~~~ 87 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS-QA-HREVLE 87 (157)
T ss_dssp HHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-GG-HHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-HH-HHHHHH
Confidence 799999999999999999999999999887642 34567899999999999999995 44 899998
Q ss_pred CCCccccCCCCCCCeEEEEeC-CCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHH
Q 022170 67 GPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 145 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~ 145 (301)
+..+++. +++++|.++ +..+.+...+.+.+.+.. .. ..+.++.+|.+..+......+..++.+-|++.
T Consensus 88 ~l~~~l~-----~~~~ii~~~KG~~~~~~~~~~~~i~~~~----~~--~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~~ 156 (157)
T PF01210_consen 88 QLAPYLK-----KGQIIISATKGFEPGTLLLLSEVIEEIL----PI--PRIAVLSGPSFAEEIAEGKPTAVVIASKNEEV 156 (157)
T ss_dssp HHTTTSH-----TT-EEEETS-SEETTEEEEHHHHHHHHH----SS--CGEEEEESS--HHHHHTT--EEEEEEESSHHH
T ss_pred HHhhccC-----CCCEEEEecCCcccCCCccHHHHHHHHh----hh--cceEEeeCccHHHHHHcCCCeEEEEEeccccc
Confidence 7666653 345555554 666666666666655421 10 11788999999988888888867777767653
No 74
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.24 E-value=1.5e-10 Score=101.40 Aligned_cols=242 Identities=13% Similarity=0.138 Sum_probs=149.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.++|..++..||+|+++|++++.+++... .| ++.++++. ++++||+|+.+++.
T Consensus 14 MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E 92 (307)
T COG1250 14 MGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKDADLVIEAVVE 92 (307)
T ss_pred hhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-HhccCCEEEEeccc
Confidence 9999999999988999999999776543322 22 34444554 67899999999999
Q ss_pred Cccchhhh-hcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccce
Q 022170 57 SSHQVLDV-YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 135 (301)
Q Consensus 57 ~~~~~~~v-~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l 135 (301)
+.+ ++.- +...+.+.+ +..-+-.++|+.++. ++++...+ +.+..+.||..+|-.-. +
T Consensus 93 ~le-vK~~vf~~l~~~~~----~~aIlASNTSsl~it---~ia~~~~r------per~iG~HFfNP~~~m~--------L 150 (307)
T COG1250 93 DLE-LKKQVFAELEALAK----PDAILASNTSSLSIT---ELAEALKR------PERFIGLHFFNPVPLMP--------L 150 (307)
T ss_pred cHH-HHHHHHHHHHhhcC----CCcEEeeccCCCCHH---HHHHHhCC------chhEEEEeccCCCCcce--------e
Confidence 877 5544 443344432 122223344555555 55555432 22223467777664332 2
Q ss_pred EEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 136 TFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 136 ~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
+=++.| ++++++++..+.+.+++.++...+ -.+... |-+. ...+.|++.+.++...+++++-.++..+.
T Consensus 151 VEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D-~pGFi~----NRil---~~~~~eA~~l~~eGva~~e~ID~~~~~~~ 222 (307)
T COG1250 151 VEVIRGEKTSDETVERVVEFAKKIGKTPVVVKD-VPGFIV----NRLL---AALLNEAIRLLEEGVATPEEIDAAMRQGL 222 (307)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCEeecC-CCceeh----HhHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhcc
Confidence 223333 688999999999999987755444 223333 3322 36669999999998899999999998765
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHH--HcCCCchHHHHHHHHHHHHHHCCCCCCchHH
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAK--EVGVDCPLTSQAQDIYAKLCENGHDSKDFSC 289 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~--~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~ 289 (301)
+.. .+|+. --|+. .++...+-++.+.+... ..-.+.|+.+...+.-....+.|.|..||..
T Consensus 223 G~p-----mGpf~--------l~D~~---GlD~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 223 GLP-----MGPFE--------LADLI---GLDVMLHIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred CCC-----ccHHH--------HHHHH---hHHHHHHHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 421 11110 01221 14555444444443222 1123457777777766777788999999975
No 75
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.19 E-value=8.9e-10 Score=96.04 Aligned_cols=162 Identities=14% Similarity=0.210 Sum_probs=113.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChh--hHHHHHhCCCCCC--CCH-HHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK--ETP-FEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~g~~~~--~s~-~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||..+|+.|.++||.|.+|+++.+ ..+...+.|+... .+. .+.+..+|+||+|||-.. +.+++....+.
T Consensus 14 iG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~--~~~~l~~l~~~---- 87 (279)
T COG0287 14 MGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA--TEEVLKELAPH---- 87 (279)
T ss_pred HHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH--HHHHHHHhccc----
Confidence 899999999999999877765554 4444444555432 233 567778999999999544 67777654432
Q ss_pred CCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCH--HHhhccceEEEecC---CHHHHHHH
Q 022170 76 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV--LAAEAGTLTFMVGG---SEDAYQAA 149 (301)
Q Consensus 76 ~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~--~~a~~g~l~~~~gg---~~~~~~~~ 149 (301)
.+++.+++|.+++.-.....+.+...+ ...|+. .|++|++ ....++..++++-+ +++.++++
T Consensus 88 -l~~g~iv~Dv~S~K~~v~~a~~~~~~~-----------~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~ 155 (279)
T COG0287 88 -LKKGAIVTDVGSVKSSVVEAMEKYLPG-----------DVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEV 155 (279)
T ss_pred -CCCCCEEEecccccHHHHHHHHHhccC-----------CCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHH
Confidence 357889999999988877777665532 125665 6999984 44446666777755 35678889
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHH
Q 022170 150 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180 (301)
Q Consensus 150 ~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~ 180 (301)
..+++.+|.+++++.+...-..+-.++.+-.
T Consensus 156 ~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH 186 (279)
T COG0287 156 KRLWEALGARLVEMDAEEHDRVMAAVSHLPH 186 (279)
T ss_pred HHHHHHcCCEEEEcChHHHhHHHHHHHHHHH
Confidence 9999999999988876555555555544433
No 76
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.17 E-value=2.3e-10 Score=112.36 Aligned_cols=240 Identities=16% Similarity=0.050 Sum_probs=140.4
Q ss_pred CcHHHHHHHH-hCCCeEEEEcCChhhHHHHH-----------hC-------------CCCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFS-----------DM-------------GVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~~~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e~~~~adiVi~~vp 55 (301)
||..+|..++ ++||+|++||++++..++.. +. .++.++++ +.+++||+||-|+|
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~adlViEav~ 393 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFKDVDIVIEAVF 393 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhccCCEEEEecc
Confidence 8999999998 58999999999998654431 11 24455666 46789999999999
Q ss_pred CCccchhh-hhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 56 SSSHQVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 56 ~~~~~~~~-v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
.+.+ ++. ++.+.+.+++ +...+..++|+.++. ++++.+.. +.+..+.||..+|-.-...
T Consensus 394 E~l~-~K~~v~~~l~~~~~----~~~ilasnTS~l~i~---~la~~~~~------p~r~~g~HffnP~~~~~lV------ 453 (699)
T TIGR02440 394 EDLA-LKHQMVKDIEQECA----AHTIFASNTSSLPIG---QIAAAASR------PENVIGLHYFSPVEKMPLV------ 453 (699)
T ss_pred ccHH-HHHHHHHHHHhhCC----CCcEEEeCCCCCCHH---HHHHhcCC------cccEEEEecCCccccCceE------
Confidence 8876 554 4444444442 222233344455555 55555432 2323346676655332211
Q ss_pred eEEEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 135 LTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 135 l~~~~g--g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
=++.| .++++++.+..+++.+++.++.+.+ ..+... |=+. ...++|++.+.+ .|++++++-.++. +.
T Consensus 454 -Evv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d-~pGfi~----nRl~---~~~~~Ea~~l~~-~G~~~~dID~a~~-~~ 522 (699)
T TIGR02440 454 -EVIPHAGTSEQTIATTVALAKKQGKTPIVVAD-KAGFYV----NRIL---APYMNEAARLLL-EGEPVEHIDKALV-KF 522 (699)
T ss_pred -EEeCCCCCCHHHHHHHHHHHHHcCCeEEEEcc-ccchHH----HHHH---HHHHHHHHHHHH-CCCCHHHHHHHHH-Hc
Confidence 12222 2788999999999999999999965 234333 3222 356699998887 4679999988874 32
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchH
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 288 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~ 288 (301)
+. + .+|+. . -|+ ..++...+-.+.+.+...+.-.+.++++...+--+...+.|.|..||.
T Consensus 523 G~-p----~GPf~------l--~D~---vGld~~~~i~~~l~~~~~~~~~~~~~l~~~v~~G~lG~ksg~GfY~y~ 582 (699)
T TIGR02440 523 GF-P----VGPIT------L--LDE---VGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRKNGKGFYLYG 582 (699)
T ss_pred CC-C----cCHHH------H--HHH---hchHHHHHHHHHHHHhcCCCCCCcHHHHHHHHCCCCcccCCcEEEeCC
Confidence 21 1 11110 0 011 224444444444333322222344555555555555566677777775
No 77
>PLN02256 arogenate dehydrogenase
Probab=99.16 E-value=1.6e-09 Score=95.98 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=108.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||..+|..|.+.|++|++||+++.. +.....|+....+.++++ .++|+||+|+|.. . +.+++.... ... ..+
T Consensus 47 mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~-~~~vl~~l~--~~~--l~~ 119 (304)
T PLN02256 47 FGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-S-TEAVLRSLP--LQR--LKR 119 (304)
T ss_pred HHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-H-HHHHHHhhh--hhc--cCC
Confidence 7999999999999999999998743 444456777777888876 4799999999954 4 788876531 111 235
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHH--hhccceEEEec-------CCHHHHHHH
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLA--AEAGTLTFMVG-------GSEDAYQAA 149 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~--a~~g~l~~~~g-------g~~~~~~~~ 149 (301)
+++++|.+++.-.....+.+.+.. +..|+ ..|++|.+.. ...+...++.. .+++..+.+
T Consensus 120 ~~iviDv~SvK~~~~~~~~~~l~~-----------~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 188 (304)
T PLN02256 120 STLFVDVLSVKEFPKNLLLQVLPE-----------EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERF 188 (304)
T ss_pred CCEEEecCCchHHHHHHHHHhCCC-----------CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHH
Confidence 679999999877666666655432 13454 4588876643 22233222322 267788999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHH
Q 022170 150 KPLFLSMGKNTIYCGGAGNGAAAKICN 176 (301)
Q Consensus 150 ~~ll~~~~~~~~~~g~~g~a~~~k~~~ 176 (301)
.++++.+|.+++.+.+...-..+-.++
T Consensus 189 ~~l~~~lGa~v~~~~~eeHD~~vA~iS 215 (304)
T PLN02256 189 LDIFEEEGCRMVEMSCEEHDRYAAGSQ 215 (304)
T ss_pred HHHHHHCCCEEEEeCHHHHhHHHHhhh
Confidence 999999999999887654444444443
No 78
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.16 E-value=2.3e-10 Score=112.61 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=117.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||..||..++.+||+|++||++++..+.. .+.| ++.++++ +.+++||+||-|+|.
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~E 402 (715)
T PRK11730 324 MGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERVDVVVEAVVE 402 (715)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEecccC
Confidence 89999999999999999999999876432 1112 4445566 457899999999998
Q ss_pred Cccchhhh-hcCCCccccCCCCCCCeE-EEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 57 SSHQVLDV-YNGPNGLLQGGNSVRPQL-LIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~~v-~~~~~~~l~~~~~~~~~i-vid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
+.+ ++.- +...+.++ +++.+ ..++|+.++. ++++.+.. +.+..+.||..+|-.-.-
T Consensus 403 ~l~-~K~~vf~~l~~~~-----~~~~ilasNTSsl~i~---~la~~~~~------p~r~~g~Hff~P~~~~~l------- 460 (715)
T PRK11730 403 NPK-VKAAVLAEVEQKV-----REDTILASNTSTISIS---LLAKALKR------PENFCGMHFFNPVHRMPL------- 460 (715)
T ss_pred cHH-HHHHHHHHHHhhC-----CCCcEEEEcCCCCCHH---HHHhhcCC------CccEEEEecCCcccccce-------
Confidence 876 5544 44434444 23323 3344444444 55555432 222234666655432211
Q ss_pred eEEEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 135 LTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 135 l~~~~g--g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
+=++.| .++++++.+..+++.+++.++.+.+ ..+... |=+. ...++|++.+.++. .+++++-.++..+.
T Consensus 461 VEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d-~pGfv~----nRi~---~~~~~ea~~lv~~G-a~~e~ID~a~~~~~ 531 (715)
T PRK11730 461 VEVIRGEKTSDETIATVVAYASKMGKTPIVVND-CPGFFV----NRVL---FPYFAGFSQLLRDG-ADFRQIDKVMEKQF 531 (715)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCceEEecC-cCchhH----HHHH---HHHHHHHHHHHHcC-CCHHHHHHHHHhhC
Confidence 112223 2789999999999999999998865 333333 3332 24568999988765 99999988887654
No 79
>PLN02712 arogenate dehydrogenase
Probab=99.16 E-value=5.6e-10 Score=108.61 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=104.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHh-cCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~-~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||..+|..|.+.|++|++|||+... +...+.|+....++++++. .+|+||+|+|. .. +.+++..... .. ..+
T Consensus 380 mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~-~~~vi~~l~~--~~--lk~ 452 (667)
T PLN02712 380 FGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LS-TEKVLKSLPF--QR--LKR 452 (667)
T ss_pred HHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HH-HHHHHHHHHH--hc--CCC
Confidence 7999999999999999999999654 4555668777778888775 58999999995 44 7777765321 11 235
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhcc--ceE-----EEecCCHHHHH---H
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAG--TLT-----FMVGGSEDAYQ---A 148 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g--~l~-----~~~gg~~~~~~---~ 148 (301)
+++++|++++.-.....+.+.+.. +..|+ ..|++|.+.. ..| .+. .+++++.+..+ .
T Consensus 453 g~ivvDv~SvK~~~~~~~~~~l~~-----------~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~ 520 (667)
T PLN02712 453 STLFVDVLSVKEFPRNLFLQHLPQ-----------DFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDS 520 (667)
T ss_pred CcEEEECCCccHHHHHHHHHhccC-----------CCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHH
Confidence 789999999985444444443321 25677 7899997754 111 111 34456555544 4
Q ss_pred HHHHHHhcCCCeEeeCCcchHHHH
Q 022170 149 AKPLFLSMGKNTIYCGGAGNGAAA 172 (301)
Q Consensus 149 ~~~ll~~~~~~~~~~g~~g~a~~~ 172 (301)
+..+++.+|.+++.+.+...-..+
T Consensus 521 l~~l~~~lGa~vv~ms~eeHD~~~ 544 (667)
T PLN02712 521 FLDIFAREGCRMVEMSCAEHDWHA 544 (667)
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHH
Confidence 458889999999988764444333
No 80
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.13 E-value=4.6e-10 Score=110.43 Aligned_cols=239 Identities=15% Similarity=0.055 Sum_probs=141.5
Q ss_pred CcHHHHHHHH-hCCCeEEEEcCChhhHHHHH-----------hC-------------CCCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFS-----------DM-------------GVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~~~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e~~~~adiVi~~vp 55 (301)
||..+|..++ .+|++|++||++++..+... +. .++.++++ +++++||+||-|+|
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~ 398 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFKHADVVIEAVF 398 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhccCCEEeeccc
Confidence 8999999999 88999999999988654431 11 14445566 56789999999999
Q ss_pred CCccchhhh-hcCCCccccCCCCCCCeEE-EEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhcc
Q 022170 56 SSSHQVLDV-YNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 133 (301)
Q Consensus 56 ~~~~~~~~v-~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g 133 (301)
.+.+ ++.- +...+.++ +++.++ .++|+.++. ++++.+.. +.+..+.||..+|-.-.-
T Consensus 399 E~~~-~K~~v~~~le~~~-----~~~~ilasnTS~l~i~---~la~~~~~------p~r~ig~Hff~P~~~~~l------ 457 (708)
T PRK11154 399 EDLA-LKQQMVAEVEQNC-----APHTIFASNTSSLPIG---QIAAAAAR------PEQVIGLHYFSPVEKMPL------ 457 (708)
T ss_pred ccHH-HHHHHHHHHHhhC-----CCCcEEEECCCCCCHH---HHHHhcCc------ccceEEEecCCccccCce------
Confidence 8876 5544 44334443 233333 334444444 55554432 232334666655432211
Q ss_pred ceEEEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 134 TLTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 134 ~l~~~~g--g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
+=++.| .++++++.+..+++.+++.++.+.+ ..+....- +. ...++|++.+.++ |++++++-.++. +
T Consensus 458 -VEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d-~pGfi~nR----l~---~~~~~EA~~lv~e-Gv~~~dID~a~~-~ 526 (708)
T PRK11154 458 -VEVIPHAKTSAETIATTVALAKKQGKTPIVVRD-GAGFYVNR----IL---APYINEAARLLLE-GEPIEHIDAALV-K 526 (708)
T ss_pred -EEEECCCCCCHHHHHHHHHHHHHcCCceEEEec-cCcHHHHH----HH---HHHHHHHHHHHHc-CCCHHHHHHHHH-H
Confidence 112333 2788999999999999999988865 33333332 22 3566999999886 789999887775 3
Q ss_pred CCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchH
Q 022170 212 SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 288 (301)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~ 288 (301)
.+. + .+|.. . -| ...++...+-++.+.+...+.-.+.++++...+--+.+.+.|.|..||.
T Consensus 527 ~G~-p----~GPf~------~--~D---~~Gld~~~~i~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~GfY~y~ 587 (708)
T PRK11154 527 FGF-P----VGPIT------L--LD---EVGIDVGTKIIPILEAALGERFSAPAAFDKLLNDDRKGRKNGRGFYLYG 587 (708)
T ss_pred cCC-C----CCHHH------H--HH---HhhhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCCcccCCceEEECC
Confidence 221 1 11110 0 01 1224545544444444332222345555555554455666777777775
No 81
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.12 E-value=4.7e-10 Score=110.27 Aligned_cols=181 Identities=15% Similarity=0.176 Sum_probs=118.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------C-------------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||..||..++.+||+|++||++++..++..+ . .++.++++ +.+++||+||.++|.
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~E 402 (714)
T TIGR02437 324 MGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDNVDIVVEAVVE 402 (714)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEEcCcc
Confidence 8999999999999999999999987654321 1 24445566 456899999999998
Q ss_pred Cccchhh-hhcCCCccccCCCCCCCeEE-EEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 57 SSHQVLD-VYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~~-v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
+.+ ++. ++.+.+.++ +++.++ .++|+.++. ++++.+.. +.+..+.||..+|-.-.-.
T Consensus 403 ~l~-~K~~vf~~l~~~~-----~~~~ilasnTS~l~i~---~ia~~~~~------p~r~ig~Hff~P~~~~~lv------ 461 (714)
T TIGR02437 403 NPK-VKAAVLAEVEQHV-----REDAILASNTSTISIS---LLAKALKR------PENFCGMHFFNPVHRMPLV------ 461 (714)
T ss_pred cHH-HHHHHHHHHHhhC-----CCCcEEEECCCCCCHH---HHHhhcCC------cccEEEEecCCCcccCceE------
Confidence 876 554 444444444 233333 334444444 55555432 2333346776654322111
Q ss_pred eEEEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 135 LTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 135 l~~~~g--g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
=++.| .++++++.+..+++.+++.++.+.+ ..+... |=+. ...+.|++.+.+. |++++++-.++..+.
T Consensus 462 -Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d-~pGfi~----NRl~---~~~~~ea~~l~~e-G~~~~~ID~a~~~~~ 531 (714)
T TIGR02437 462 -EVIRGEKSSDETIATVVAYASKMGKTPIVVND-CPGFFV----NRVL---FPYFGGFSKLLRD-GADFVRIDKVMEKQF 531 (714)
T ss_pred -eecCCCCCCHHHHHHHHHHHHHcCCEEEEeCC-cccchH----HHHH---HHHHHHHHHHHHC-CCCHHHHHHHHHhcC
Confidence 12222 2688999999999999999999975 233333 4333 2456899999875 599999988887654
Q ss_pred C
Q 022170 213 A 213 (301)
Q Consensus 213 ~ 213 (301)
+
T Consensus 532 G 532 (714)
T TIGR02437 532 G 532 (714)
T ss_pred C
Confidence 3
No 82
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.11 E-value=2.3e-09 Score=92.48 Aligned_cols=184 Identities=15% Similarity=0.191 Sum_probs=115.1
Q ss_pred CcHHHHHHHHhCCC---e-EEEEcC-ChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAGY---K-MAVHDV-NCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G~---~-V~~~dr-~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||.+++..|.++|+ + +++++| ++++.+.+.+. ++..+.+..++++++|+||+|+|+. . .++++.+....+
T Consensus 15 mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~-~~~v~~~l~~~~-- 90 (245)
T PRK07634 15 MAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-A-HEELLAELSPLL-- 90 (245)
T ss_pred HHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-H-HHHHHHHHHhhc--
Confidence 78999999998873 3 778887 57788777653 6767778889999999999999954 4 788886543322
Q ss_pred CCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEE--EecCCHHHHHHHHH
Q 022170 75 GNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTF--MVGGSEDAYQAAKP 151 (301)
Q Consensus 75 ~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~--~~gg~~~~~~~~~~ 151 (301)
++++||.+ .+++.++ +.+.+.. + .......|.+.... ..+...+ ...++++..+.++.
T Consensus 91 ----~~~~vis~~~gi~~~~---l~~~~~~-------~---~~v~r~~Pn~a~~v--~~g~~~~~~~~~~~~~~~~~v~~ 151 (245)
T PRK07634 91 ----SNQLVVTVAAGIGPSY---LEERLPK-------G---TPVAWIMPNTAAEI--GKSISLYTMGQSVNETHKETLQL 151 (245)
T ss_pred ----cCCEEEEECCCCCHHH---HHHHcCC-------C---CeEEEECCcHHHHH--hcCCeEEeeCCCCCHHHHHHHHH
Confidence 23466665 5566663 3333321 0 01234566544332 2342222 23457888999999
Q ss_pred HHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 152 LFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 152 ll~~~~~~~~~~g~--~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
+|+.+|..++ +.+ .....++--+...+.+..+. .+...+.+.|++.++..+++...
T Consensus 152 lf~~~G~~~~-~~e~~~~~~~a~~gs~pa~~~~~~~---a~~~~~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 152 ILKGIGTSQL-CTEEEVHQLTAVTGSAPAFLYYFAE---SLIEATKSYGVDEETAKHLVIQM 209 (245)
T ss_pred HHHhCCCEEE-ECHHHcchHHhhhcchHHHHHHHHH---HHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999998664 543 22222222222223322223 33455788899999988887654
No 83
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.09 E-value=2.2e-08 Score=86.26 Aligned_cols=240 Identities=18% Similarity=0.189 Sum_probs=145.6
Q ss_pred CcHHHHHHHHhCC----CeEEEEcCChhhHHHHH-hCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAG----YKMAVHDVNCNVMKMFS-DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G----~~V~~~dr~~~~~~~l~-~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+|+..|.++| .+|++.+|++++.+.+. +.|...+++..+++..+|+||+||. |+. +.+|+...++ .
T Consensus 12 Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK-Pq~-~~~vl~~l~~-~--- 85 (266)
T COG0345 12 MGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK-PQD-LEEVLSKLKP-L--- 85 (266)
T ss_pred HHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC-hHh-HHHHHHHhhc-c---
Confidence 8999999999999 68999999999997444 4576667788899999999999999 677 9999987655 2
Q ss_pred CCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccceEEEecC--CHHHHHHHHH
Q 022170 76 NSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKP 151 (301)
Q Consensus 76 ~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ 151 (301)
.++++|| -..+++.++.+ +.+.. ..++ -.|.. +.....|...+..+. +++..+.+..
T Consensus 86 --~~~~lvISiaAGv~~~~l~---~~l~~------------~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~v~~ 146 (266)
T COG0345 86 --TKDKLVISIAAGVSIETLE---RLLGG------------LRVVRVMPNT--PALVGAGVTAISANANVSEEDKAFVEA 146 (266)
T ss_pred --cCCCEEEEEeCCCCHHHHH---HHcCC------------CceEEeCCCh--HHHHcCcceeeecCccCCHHHHHHHHH
Confidence 1344555 44677766443 33321 1122 12322 333445553333332 5677789999
Q ss_pred HHHhcCCCeEeeCCc--chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHhhcC-CCccccccCCCCCCc
Q 022170 152 LFLSMGKNTIYCGGA--GNGAAAKICNNLTMAVSMLGVSEAL-TLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGV 227 (301)
Q Consensus 152 ll~~~~~~~~~~g~~--g~a~~~k~~~N~~~~~~~~~~~E~~-~l~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 227 (301)
+|+.+|. ++.+.+. ....++-=..-.+. ..+.|++ ..+.+.|++.++..++..... |..-+......-|..
T Consensus 147 l~~~~G~-v~~v~E~~~da~TaisGSgPAyv----~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~ 221 (266)
T COG0345 147 LLSAVGK-VVEVEESLMDAVTALSGSGPAYV----FLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAE 221 (266)
T ss_pred HHHhcCC-eEEechHHhhHHHHHhcCCHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 9999996 5566542 12222221222222 2233433 456788999999988877653 111111111111111
Q ss_pred ccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 228 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
+ -++-.+|+.+...+.++++ +.++..-+.+++.+.++++.+.|
T Consensus 222 L----r~~VtSPGGtTiagl~~le-------~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 222 L----RDQVTSPGGTTIAGLRVLE-------EDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred H----HHhCcCCCchHHHHHHHHH-------HhChHHHHHHHHHHHHHHHHHhc
Confidence 1 1222345555445544444 66787788888888888876654
No 84
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.07 E-value=3.5e-09 Score=105.32 Aligned_cols=158 Identities=15% Similarity=0.187 Sum_probs=114.4
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHHhCCCC--CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g~~--~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||.++++.|.++| ++|++|||++++.+.+.+.|+. ...++.++++++|+||+|+|.. . +.+++......+
T Consensus 14 mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~-~~~vl~~l~~~~---- 87 (735)
T PRK14806 14 IGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-A-MEKVLADLKPLL---- 87 (735)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-H-HHHHHHHHHHhc----
Confidence 7999999999999 4899999999998888877764 4557888889999999999954 4 788876544333
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceE-EecccCCCHHH--------hhccceEEEec---CCHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM-LDAPVSGGVLA--------AEAGTLTFMVG---GSED 144 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~pv~g~~~~--------a~~g~l~~~~g---g~~~ 144 (301)
.++.+++|+++++....+.+.+.+... .++| ...|++|++.. ...+..++++. ++++
T Consensus 88 -~~~~ii~d~~svk~~~~~~l~~~~~~~----------~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~ 156 (735)
T PRK14806 88 -SEHAIVTDVGSTKGNVVDAARAVFGEL----------PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPA 156 (735)
T ss_pred -CCCcEEEEcCCCchHHHHHHHHhcccc----------CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHH
Confidence 345799999999988877776665320 1444 46788866531 11233344443 4677
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHH
Q 022170 145 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 175 (301)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~ 175 (301)
.++.++++|+.+|..++++.+...-..+-++
T Consensus 157 ~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~ 187 (735)
T PRK14806 157 ALARVDRLWRAVGADVLHMDVAHHDEVLAAT 187 (735)
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHhHHHHHh
Confidence 8899999999999988888764444444333
No 85
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.06 E-value=1.6e-08 Score=89.47 Aligned_cols=247 Identities=13% Similarity=0.129 Sum_probs=136.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC--------------CCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~--------------~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||+.+|..|.++||+|++|+|+ +..+.+.+.|.. ..+++++ ....|+||+|++..+ +.+++.
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~--~~~~l~ 77 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ--TEEAAA 77 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh--HHHHHH
Confidence 7999999999999999999997 667777765521 1223444 567999999999654 788876
Q ss_pred CCCccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh-ccceEEEecCC--
Q 022170 67 GPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE-AGTLTFMVGGS-- 142 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~-~g~l~~~~gg~-- 142 (301)
...+.+. ++.+|+-. .++... +.+.+.+.... ...++.+..+-..+ |.... .+.-.+.+|..
T Consensus 78 ~l~~~l~-----~~~~iv~~qNG~g~~--~~l~~~~~~~~------v~~g~~~~~~~~~~-pg~v~~~~~~~~~iG~~~~ 143 (293)
T TIGR00745 78 LLLPLIG-----KNTKVLFLQNGLGHE--ERLRELLPARR------ILGGVVTHGAVREE-PGVVHHAGLGATKIGDYVG 143 (293)
T ss_pred HhHhhcC-----CCCEEEEccCCCCCH--HHHHHHhCccC------EEEEEEEEeeEEcC-CcEEEEeccccEEEecCCC
Confidence 6555442 23344444 455443 23444332210 00011122111111 11111 11112344432
Q ss_pred -HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHcCCC
Q 022170 143 -EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL---------------------TMAVSMLGVSEALTLGQSLGIS 200 (301)
Q Consensus 143 -~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~---------------------~~~~~~~~~~E~~~l~~~~G~~ 200 (301)
.+..+.+..+|+..+.++....++-...-.|++.|. ........+.|+..++++.|++
T Consensus 144 ~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~ 223 (293)
T TIGR00745 144 ENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVD 223 (293)
T ss_pred chHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCC
Confidence 234566777777766665555556555566665444 2234567789999999999975
Q ss_pred --HHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022170 201 --ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 277 (301)
Q Consensus 201 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 277 (301)
.+.+.+.+..-..... .++ +.+. .|+..+-. .+..-=...++++++++|+++|..+.++++++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~--~~~---sSm~------~D~~~gr~-tEid~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 224 LPDDEVEELVRAVIRMTA--ENT---SSML------QDLLRGRR-TEIDAINGAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred CCHHHHHHHHHHHHhcCC--CCC---ChHH------HHHHcCCc-chHHHhccHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 3333333322110000 000 0011 12221111 1222234689999999999999999999887643
No 86
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.06 E-value=1.9e-08 Score=89.95 Aligned_cols=245 Identities=12% Similarity=0.094 Sum_probs=137.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-------------CCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------------KETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------------~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
||+.+|..|.++||+|++|.|++. +.+.+.|... ..+..+....+|+||+|++..+ +.+++..
T Consensus 16 iG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~--~~~~~~~ 91 (313)
T PRK06249 16 IGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTA--NALLAPL 91 (313)
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCC--hHhHHHH
Confidence 689999999999999999999863 4455544221 1112234567999999999654 6777655
Q ss_pred CCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCH--HHhhccceEEE-ecC-C-
Q 022170 68 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV--LAAEAGTLTFM-VGG-S- 142 (301)
Q Consensus 68 ~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~--~~a~~g~l~~~-~gg-~- 142 (301)
..+.+. +.+.++.-..+... .+.+.+.+.+.. ...++.++.+...+.. .....|.+.+- ..+ +
T Consensus 92 l~~~~~----~~~~iv~lqNG~~~--~e~l~~~~~~~~------v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~ 159 (313)
T PRK06249 92 IPQVAA----PDAKVLLLQNGLGV--EEQLREILPAEH------LLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAA 159 (313)
T ss_pred HhhhcC----CCCEEEEecCCCCc--HHHHHHHCCCCc------EEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcc
Confidence 444442 23333333344442 234444443210 0011333333222211 01112332221 123 2
Q ss_pred ----HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHc
Q 022170 143 ----EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT---------------------MAVSMLGVSEALTLGQSL 197 (301)
Q Consensus 143 ----~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~---------------------~~~~~~~~~E~~~l~~~~ 197 (301)
.+..+.+..+|+..+..+....++-...-.|++.|.. .......+.|+..++++.
T Consensus 160 ~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~ 239 (313)
T PRK06249 160 DDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAAC 239 (313)
T ss_pred cchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhc
Confidence 3556677888888787766666666666666665532 233567789999999999
Q ss_pred CCC-----HHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 022170 198 GIS-----ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 272 (301)
Q Consensus 198 G~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~ 272 (301)
|++ .+.+++......... +.+. .|+..+.. .+.--=...++++++++|+++|..+.+++
T Consensus 240 Gi~~~~~~~~~~~~~~~~~~~~~---------sSM~------qD~~~gr~-tEid~i~G~vv~~a~~~Gi~~P~~~~l~~ 303 (313)
T PRK06249 240 GHTLPEGYADHMLAVTERMPDYR---------PSMY------HDFEEGRP-LELEAIYANPLAAARAAGCAMPRVEMLYQ 303 (313)
T ss_pred CCCCChhHHHHHHHHhhcCCCCC---------ChHH------HHHHCCCc-ccHHHHhhHHHHHHHHhCCCCcHHHHHHH
Confidence 986 222333322211100 1111 12222211 12222346899999999999999999998
Q ss_pred HHHHH
Q 022170 273 IYAKL 277 (301)
Q Consensus 273 ~~~~a 277 (301)
+++..
T Consensus 304 ~l~~~ 308 (313)
T PRK06249 304 ALEFL 308 (313)
T ss_pred HHHHH
Confidence 87654
No 87
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.06 E-value=9.6e-10 Score=108.33 Aligned_cols=176 Identities=16% Similarity=0.139 Sum_probs=115.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------C-------------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||..||..++.+|++|++||++++.+++..+ . .++.+++++ .+++||+||-++|.
T Consensus 346 MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEAv~E 424 (737)
T TIGR02441 346 MGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNADMVIEAVFE 424 (737)
T ss_pred hHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeehhhccc
Confidence 8999999999999999999999988654322 1 244456664 57899999999999
Q ss_pred Cccchhhhh-cCCCccccCCCCCCCeE-EEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 57 SSHQVLDVY-NGPNGLLQGGNSVRPQL-LIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~~v~-~~~~~~l~~~~~~~~~i-vid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
+.+ ++.-+ .+.+.++ +++.+ ..++|+.++. ++++.+.. +.+..+.||..+|-.-.-
T Consensus 425 ~l~-~K~~vf~~l~~~~-----~~~~ilasNTSsl~i~---~la~~~~~------p~r~ig~Hff~P~~~m~L------- 482 (737)
T TIGR02441 425 DLS-LKHKVIKEVEAVV-----PPHCIIASNTSALPIK---DIAAVSSR------PEKVIGMHYFSPVDKMQL------- 482 (737)
T ss_pred cHH-HHHHHHHHHHhhC-----CCCcEEEEcCCCCCHH---HHHhhcCC------ccceEEEeccCCcccCce-------
Confidence 877 55544 3334444 23333 3345555555 55555432 222234666655432211
Q ss_pred eEEEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 135 LTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 135 l~~~~g--g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
+=++.| .++++++.+..+++.+++.++.+++ ..+... |=+. ...++|++.+.+. |++++++-.++
T Consensus 483 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d-~pGFi~----NRi~---~~~~~ea~~lv~e-Gv~~~~ID~a~ 549 (737)
T TIGR02441 483 LEIITHDGTSKDTLASAVAVGLKQGKVVIVVKD-GPGFYT----TRCL---GPMLAEVIRLLQE-GVDPKKLDKLT 549 (737)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECC-cCCchH----HHHH---HHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 112222 3788999999999999999999875 233333 3332 3567999988865 68999998875
No 88
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.01 E-value=1.4e-08 Score=90.34 Aligned_cols=181 Identities=15% Similarity=0.095 Sum_probs=113.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH-HHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~-~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.++|.+|.+.|++|.+++++.++. +...+.|.... ++.++++.||+|++++|+.. ..+++.. .+.+. ..+
T Consensus 28 mG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~--~~~V~~~--~I~~~--Lk~ 100 (330)
T PRK05479 28 QGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEV--QAEVYEE--EIEPN--LKE 100 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHH--HHHHHHH--HHHhc--CCC
Confidence 79999999999999999988765544 33445577654 89999999999999999654 5777721 23332 235
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCce-EEecccCCCHH-----HhhccceEEE-ecCC--HHHHHHHH
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV-MLDAPVSGGVL-----AAEAGTLTFM-VGGS--EDAYQAAK 150 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~pv~g~~~-----~a~~g~l~~~-~gg~--~~~~~~~~ 150 (301)
+++++.+++......+. ..+. ++. +.-+|-..+.. ....|...++ +..| .+..+.+.
T Consensus 101 g~iL~~a~G~~i~~~~~---~p~~-----------~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~ 166 (330)
T PRK05479 101 GAALAFAHGFNIHFGQI---VPPA-----------DVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLAL 166 (330)
T ss_pred CCEEEECCCCChhhcee---ccCC-----------CCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHH
Confidence 67888888877664321 1110 122 22335443331 1234543444 5666 78889999
Q ss_pred HHHHhcCCCeE-----eeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022170 151 PLFLSMGKNTI-----YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 203 (301)
Q Consensus 151 ~ll~~~~~~~~-----~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~ 203 (301)
.+++.+|.... .+.+.-.-..+.- +..+......++..++......|.+|+.
T Consensus 167 ~l~~aiG~~~~g~~~ttf~~e~~~dl~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~ 223 (330)
T PRK05479 167 AYAKGIGGTRAGVIETTFKEETETDLFGE-QAVLCGGLTELIKAGFETLVEAGYQPEM 223 (330)
T ss_pred HHHHHcCCCccceeeeeecccccccchhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 99999998653 2222110001111 2233334446667778888999999885
No 89
>PLN02712 arogenate dehydrogenase
Probab=99.01 E-value=1.1e-08 Score=99.80 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=107.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||..+|..|.+.|++|++|||+... +...+.|+....++.+++ .++|+|++|+|. .. +.+++.+.. .+. ..+
T Consensus 63 mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~-~~~vl~~l~--~~~--l~~ 135 (667)
T PLN02712 63 YGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-IS-TENVLKSLP--LQR--LKR 135 (667)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HH-HHHHHHhhh--hhc--CCC
Confidence 7999999999999999999998554 455566877777888865 569999999995 45 788886542 111 235
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHH--HhhccceEEEec---CC-H---HHHHHH
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVL--AAEAGTLTFMVG---GS-E---DAYQAA 149 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~--~a~~g~l~~~~g---g~-~---~~~~~~ 149 (301)
+++|+|++++.....+.+.+.+.+ ++.|+ ..|++|.+. ....+...++.+ ++ + +..+.+
T Consensus 136 g~iVvDv~SvK~~~~~~l~~~l~~-----------~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (667)
T PLN02712 136 NTLFVDVLSVKEFAKNLLLDYLPE-----------DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSF 204 (667)
T ss_pred CeEEEECCCCcHHHHHHHHHhcCC-----------CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHH
Confidence 789999999887666555555432 13454 469998773 223343344442 33 2 235567
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHH
Q 022170 150 KPLFLSMGKNTIYCGGAGNGAAAKIC 175 (301)
Q Consensus 150 ~~ll~~~~~~~~~~g~~g~a~~~k~~ 175 (301)
..+++.+|.+++.+.+...-..+-.+
T Consensus 205 ~~l~~~lGa~v~~ms~eeHD~~~A~v 230 (667)
T PLN02712 205 LEVFEREGCKMVEMSCTEHDKYAAES 230 (667)
T ss_pred HHHHHHcCCEEEEeCHHHHHHHHHHH
Confidence 79999999999988764444444333
No 90
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.99 E-value=8.6e-09 Score=75.14 Aligned_cols=93 Identities=23% Similarity=0.222 Sum_probs=75.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 246 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (301)
..|+.+|++.|.+.++.+++++|+..+|++.|+|..++.++++...-.+. ....| .++|...++
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~--~~~~p--------------g~g~GG~Cl 65 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGP--HYLRP--------------GPGFGGSCL 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTS--SS-S---------------SSS--SSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccccc--ccCCC--------------CCCCCCcch
Confidence 46899999999999999999999999999999999999999997642110 01111 235778899
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 022170 247 AKDLNLALASAKEVGVDCPLTSQAQDIYA 275 (301)
Q Consensus 247 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 275 (301)
.||...+...+++.|.+.++++++.++.+
T Consensus 66 pkD~~~L~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 66 PKDPYALIYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 99999999999999999999999887654
No 91
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.99 E-value=3.5e-10 Score=86.73 Aligned_cols=94 Identities=14% Similarity=0.101 Sum_probs=61.2
Q ss_pred CcHHHHHHHHhCCCeEEE-EcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAV-HDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~-~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
+|++|++.|.++||+|.. |+|+++..+.+.+. +.....++.+++..+|+||++|||+. +.+++.++.... ...
T Consensus 21 VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda--I~~va~~La~~~---~~~ 95 (127)
T PF10727_consen 21 VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA--IAEVAEQLAQYG---AWR 95 (127)
T ss_dssp CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH--HHHHHHHHHCC-----S-
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH--HHHHHHHHHHhc---cCC
Confidence 588999999999999875 68999888777654 44455678888999999999999875 888887653221 124
Q ss_pred CCeEEEEeCCCCHHHHHHHHH
Q 022170 79 RPQLLIDSSTIDPQTSRNISA 99 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~ 99 (301)
++++|++||+..+....+..+
T Consensus 96 ~g~iVvHtSGa~~~~vL~p~~ 116 (127)
T PF10727_consen 96 PGQIVVHTSGALGSDVLAPAR 116 (127)
T ss_dssp TT-EEEES-SS--GGGGHHHH
T ss_pred CCcEEEECCCCChHHhhhhHH
Confidence 678999999988876655544
No 92
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.98 E-value=3.6e-10 Score=92.69 Aligned_cols=142 Identities=17% Similarity=0.276 Sum_probs=85.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------C-------------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.++|..++.+||+|++||++++..+...+ . .+..+++++++. +||+||-|+|.
T Consensus 10 mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~adlViEai~E 88 (180)
T PF02737_consen 10 MGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DADLVIEAIPE 88 (180)
T ss_dssp HHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TESEEEE-S-S
T ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hhheehhhccc
Confidence 8999999999999999999999987644322 1 245678888887 99999999998
Q ss_pred Cccchhh-hhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccce
Q 022170 57 SSHQVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 135 (301)
Q Consensus 57 ~~~~~~~-v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l 135 (301)
+.. ++. ++...+.+++ +...+..++|+.++. ++++.+.. +.+..+.||..+|-.- + -.
T Consensus 89 ~l~-~K~~~~~~l~~~~~----~~~ilasnTSsl~i~---~la~~~~~------p~R~ig~Hf~~P~~~~-~------lV 147 (180)
T PF02737_consen 89 DLE-LKQELFAELDEICP----PDTILASNTSSLSIS---ELAAALSR------PERFIGMHFFNPPHLM-P------LV 147 (180)
T ss_dssp SHH-HHHHHHHHHHCCS-----TTSEEEE--SSS-HH---HHHTTSST------GGGEEEEEE-SSTTT---------EE
T ss_pred cHH-HHHHHHHHHHHHhC----CCceEEecCCCCCHH---HHHhccCc------CceEEEEecccccccC-c------eE
Confidence 866 544 4444344432 222333444555554 55554432 2222346676544321 1 11
Q ss_pred EEEecC--CHHHHHHHHHHHHhcCCCeEeeC
Q 022170 136 TFMVGG--SEDAYQAAKPLFLSMGKNTIYCG 164 (301)
Q Consensus 136 ~~~~gg--~~~~~~~~~~ll~~~~~~~~~~g 164 (301)
=++.+. +++.++.+..+++.+++.++.+.
T Consensus 148 Evv~~~~T~~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 148 EVVPGPKTSPETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp EEEE-TTS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 133333 78899999999999999888764
No 93
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.92 E-value=3.3e-08 Score=89.50 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=105.0
Q ss_pred CcHHHHHHHHh-CCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMK-AGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~-~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||..+|+.|.+ .|++|++||++.+ ...++.+.+.+||+||+|+|-.. +.+++.+...+.+. .++
T Consensus 16 iGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~--~~~~l~~l~~~~~~--l~~ 80 (370)
T PRK08818 16 YGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRH--TAALIEEYVALAGG--RAA 80 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHH--HHHHHHHHhhhhcC--CCC
Confidence 79999999986 4899999998511 23467888999999999999544 77777665443211 246
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHH-hhccceEEEecC-CHHHHHHHHHHHHhc
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLA-AEAGTLTFMVGG-SEDAYQAAKPLFLSM 156 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~-a~~g~l~~~~gg-~~~~~~~~~~ll~~~ 156 (301)
+++|.|.+++.....+.+.+. +..|+. .|++|++.. ..++..++++.+ +.+..+.++.+++.+
T Consensus 81 ~~iVtDVgSvK~~i~~~~~~~--------------~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~ 146 (370)
T PRK08818 81 GQLWLDVTSIKQAPVAAMLAS--------------QAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSAL 146 (370)
T ss_pred CeEEEECCCCcHHHHHHHHhc--------------CCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHc
Confidence 789999999987665554211 134654 699988643 345666777765 345578899999999
Q ss_pred CCCeEeeCCcchHHHHHHHH
Q 022170 157 GKNTIYCGGAGNGAAAKICN 176 (301)
Q Consensus 157 ~~~~~~~g~~g~a~~~k~~~ 176 (301)
|.+++.+.+...-..+-+++
T Consensus 147 Ga~v~~~~aeeHD~~~A~vS 166 (370)
T PRK08818 147 QAECVYATPEHHDRVMALVQ 166 (370)
T ss_pred CCEEEEcCHHHHHHHHHHHH
Confidence 99999887766666666664
No 94
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.91 E-value=8.9e-08 Score=83.32 Aligned_cols=236 Identities=10% Similarity=0.055 Sum_probs=137.9
Q ss_pred CcHHHHHHHHhCCC----eEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||++|+..|.++|+ ++++++|++++. +.....++.++++++|+||+|+| +.. +++++.+..+.+
T Consensus 14 mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~-~~~vl~~i~~~l---- 81 (260)
T PTZ00431 14 MGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDL-AGKVLLEIKPYL---- 81 (260)
T ss_pred HHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHH-HHHHHHHHHhhc----
Confidence 89999999999872 499999987652 33455688888889999999999 565 899987654433
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC---CHHHHHHHHHHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLF 153 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll 153 (301)
.++.+|.++++++.++.+++. ... .. -++++ |- .|.....+. ++++.+ +++..+.++.+|
T Consensus 82 -~~~~iIS~~aGi~~~~l~~~~---~~~----~~----vvr~m--Pn--~p~~~g~g~-t~i~~~~~~~~~~~~~v~~l~ 144 (260)
T PTZ00431 82 -GSKLLISICGGLNLKTLEEMV---GVE----AK----IVRVM--PN--TPSLVGQGS-LVFCANNNVDSTDKKKVIDIF 144 (260)
T ss_pred -cCCEEEEEeCCccHHHHHHHc---CCC----Ce----EEEEC--CC--chhHhccee-EEEEeCCCCCHHHHHHHHHHH
Confidence 234688899999988666542 110 00 02222 21 222333343 444433 456788999999
Q ss_pred HhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCccccccCCCCCCcccC
Q 022170 154 LSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEG 230 (301)
Q Consensus 154 ~~~~~~~~~~g~--~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 230 (301)
+.+|. ++.+.+ ...+.++--+...+.+..+..+ ...+.+.|++.++..+++.... |..-+......-|..
T Consensus 145 ~~~G~-~~~v~E~~~d~~ta~~gsgPA~~~~~~~al---~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~--- 217 (260)
T PTZ00431 145 SACGI-IQEIKEKDMDIATAISGCGPAYVFLFIESL---IDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQ--- 217 (260)
T ss_pred HhCCc-EEEEChHHcchhhhhcCCHHHHHHHHHHHH---HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH---
Confidence 99996 445543 2222222222233333333333 3556788999999888877552 111111100000000
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHC
Q 022170 231 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 280 (301)
Q Consensus 231 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 280 (301)
+.++--+|+.+. ...++..++.|+.--+.+++.+.++++.+.
T Consensus 218 -l~~~v~spgG~T-------~~gl~~le~~g~~~~~~~a~~aa~~r~~~l 259 (260)
T PTZ00431 218 -LKDDVCSPGGIT-------IVGLYTLEKHAFKYTVMDAVESACQKSKSM 259 (260)
T ss_pred -HHHhCCCCChHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence 111122333222 234455567788878888888888777653
No 95
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.87 E-value=1.9e-07 Score=80.44 Aligned_cols=172 Identities=13% Similarity=0.174 Sum_probs=108.3
Q ss_pred CCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeC-CCC
Q 022170 13 GYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS-TID 90 (301)
Q Consensus 13 G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s-t~~ 90 (301)
-++|++|+|++++.+.+.+. |+..+.+..++++++|+||+||+ |.+ +.+++......+ .++++||.+. +++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~-i~~vl~~l~~~~-----~~~~~ivS~~agi~ 81 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQD-LEEVLSELKSEK-----GKDKLLISIAAGVT 81 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHH-HHHHHHHHhhhc-----cCCCEEEEecCCCC
Confidence 37899999999999888664 88788899999999999999999 676 899987654322 1345677664 555
Q ss_pred HHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccceEEEecC--CHHHHHHHHHHHHhcCCCeEeeCC--
Q 022170 91 PQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG-- 165 (301)
Q Consensus 91 p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~~~~~~~~g~-- 165 (301)
.+. +.+.+.. +...+ -.|.. +.....|...+..+. +++..+.++.+|+.+|. ++.+.+
T Consensus 82 ~~~---l~~~~~~-----------~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~v~E~~ 144 (245)
T TIGR00112 82 LEK---LSQLLGG-----------TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVGE-VVELPEAL 144 (245)
T ss_pred HHH---HHHHcCC-----------CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCC-EEEECHHH
Confidence 553 3333321 01111 22322 223334542333332 45667889999999996 445544
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 166 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 166 ~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
......+--+...+.+..+..+. ..+.+.|+++++..+++...
T Consensus 145 ~~~~talsgsgPA~~~~~~~al~---~~~v~~Gl~~~~A~~lv~~~ 187 (245)
T TIGR00112 145 MDAVTALSGSGPAYVFLFIEALA---DAGVKQGLPRELALELAAQT 187 (245)
T ss_pred cchHHhhccCcHHHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHH
Confidence 33333333344455544444443 45677899999988887765
No 96
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.84 E-value=1.3e-07 Score=83.07 Aligned_cols=184 Identities=11% Similarity=0.079 Sum_probs=105.7
Q ss_pred CcHHHHHHHHhCC----CeEEEEcCCh-hhHHHHHhC--CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMKAG----YKMAVHDVNC-NVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~~G----~~V~~~dr~~-~~~~~l~~~--g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
||++++..|.++| ++|++|+|++ ++.+.+... +...+.+..++++++|+||+|+| +.. +++++.+....+
T Consensus 12 mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~-~~~vl~~l~~~l- 88 (277)
T PRK06928 12 MADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLA-VLPLLKDCAPVL- 88 (277)
T ss_pred HHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHH-HHHHHHHHHhhc-
Confidence 7999999999998 7899999864 445555443 23446788888999999999999 555 888886544333
Q ss_pred CCCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC--CHHHHHHHH
Q 022170 74 GGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAK 150 (301)
Q Consensus 74 ~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~ 150 (301)
.+++++|.. .+++.+. +.+.+... + -++. .|.. +.....|...+..+. +++..+.++
T Consensus 89 ----~~~~~ivS~~aGi~~~~---l~~~~~~~-----~----vvR~--MPN~--~~~~g~g~t~~~~~~~~~~~~~~~v~ 148 (277)
T PRK06928 89 ----TPDRHVVSIAAGVSLDD---LLEITPGL-----Q----VSRL--IPSL--TSAVGVGTSLVAHAETVNEANKSRLE 148 (277)
T ss_pred ----CCCCEEEEECCCCCHHH---HHHHcCCC-----C----EEEE--eCcc--HHHHhhhcEEEecCCCCCHHHHHHHH
Confidence 234455544 5566663 33333210 0 0122 2322 233344542333332 456778899
Q ss_pred HHHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhc
Q 022170 151 PLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSL-GISASTLTKILNSS 211 (301)
Q Consensus 151 ~ll~~~~~~~~~~g~--~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~-G~~~~~~~~~~~~~ 211 (301)
.+|+.+|. ++.+.+ .....++--+.-.+.+..+..+. .-+.+. |++.++..+++...
T Consensus 149 ~l~~~~G~-~~~v~E~~~d~~tal~gsgPA~~~~~~~al~---~a~~~~ggl~~~~a~~l~~~~ 208 (277)
T PRK06928 149 ETLSHFSH-VMTIREENMDIASNLTSSSPGFIAAIFEEFA---EAAVRNSSLSDEEAFQFLNFA 208 (277)
T ss_pred HHHHhCCC-EEEEchhhCceeeeeecCHHHHHHHHHHHHH---HHHHHhCCCCHHHHHHHHHHH
Confidence 99999996 344533 11111111111222222222222 334566 79999888877654
No 97
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.84 E-value=3e-09 Score=77.93 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=62.5
Q ss_pred CcHHHHHHHHhCC---CeEEEE-cCChhhHHHHHhC-CCCCCC-CHHHHHhcCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAG---YKMAVH-DVNCNVMKMFSDM-GVPTKE-TPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G---~~V~~~-dr~~~~~~~l~~~-g~~~~~-s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||++|++.|.++| ++|+++ +|++++.+++.+. +..... +..++++.+|+||+|+| +.. +.+++... ...
T Consensus 10 mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~-p~~-~~~v~~~i-~~~-- 84 (96)
T PF03807_consen 10 MGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK-PQQ-LPEVLSEI-PHL-- 84 (96)
T ss_dssp HHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGG-HHHHHHHH-HHH--
T ss_pred HHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC-HHH-HHHHHHHH-hhc--
Confidence 7999999999999 999955 9999999988654 555555 89999999999999999 555 88888764 212
Q ss_pred CCCCCCeEEEEeCC
Q 022170 75 GNSVRPQLLIDSST 88 (301)
Q Consensus 75 ~~~~~~~ivid~st 88 (301)
.+++++|++..
T Consensus 85 ---~~~~~vis~~a 95 (96)
T PF03807_consen 85 ---LKGKLVISIAA 95 (96)
T ss_dssp ---HTTSEEEEEST
T ss_pred ---cCCCEEEEeCC
Confidence 35679998753
No 98
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.72 E-value=3.9e-08 Score=85.71 Aligned_cols=277 Identities=12% Similarity=0.083 Sum_probs=166.5
Q ss_pred CcHHHHHHHHhC--CC-----eEEEEcCChhhHH---HH----HhC--------------CCCCCCCHHHHHhcCCEEEE
Q 022170 1 MGFRMASNLMKA--GY-----KMAVHDVNCNVMK---MF----SDM--------------GVPTKETPFEVAEASDVVIT 52 (301)
Q Consensus 1 mG~~lA~~L~~~--G~-----~V~~~dr~~~~~~---~l----~~~--------------g~~~~~s~~e~~~~adiVi~ 52 (301)
||+++|+.+..+ +| +|.+|-+..+.-. .+ +.. .+.+.+++.+++.+||+++.
T Consensus 32 WGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ea~~dADilvf 111 (372)
T KOG2711|consen 32 WGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVEAAKDADILVF 111 (372)
T ss_pred HHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHHHhccCCEEEE
Confidence 789999988764 22 5888855432221 22 221 25567899999999999999
Q ss_pred ecCCCccchhhhhcCCCccccCCCCCCCeEEEEe-CCCC---HH-HHHHHHHHHhhchhhhccCCCCCceEEecccCCCH
Q 022170 53 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STID---PQ-TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV 127 (301)
Q Consensus 53 ~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~-st~~---p~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~ 127 (301)
.+|. +. +.+++.++.+..+ ++...|.+ .+++ +. ..+-+++.+.+. .| ..+.++.+|.+..+
T Consensus 112 ~vPh-Qf-~~~ic~~l~g~vk-----~~~~aISL~KG~e~~~~g~~i~liS~iI~~~-----lg--I~~~vL~GaNiA~E 177 (372)
T KOG2711|consen 112 VVPH-QF-IPRICEQLKGYVK-----PGATAISLIKGVEVGEEGPGIRLISQIIHRA-----LG--IPCSVLMGANIASE 177 (372)
T ss_pred eCCh-hh-HHHHHHHHhcccC-----CCCeEEEeecceeccCCCCceeehHHHHHHH-----hC--CCceeecCCchHHH
Confidence 9994 44 8899988777664 33444544 3443 22 245555655542 12 13668888888887
Q ss_pred HHhhccceEEEecCCH-HHHHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHH
Q 022170 128 LAAEAGTLTFMVGGSE-DAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSE 189 (301)
Q Consensus 128 ~~a~~g~l~~~~gg~~-~~~~~~~~ll~~~~~~~~~~g~~-----------------g~a~~~k~~~N~~~~~~~~~~~E 189 (301)
...+.=+-..+.+-++ +.-..+..+|+.-..++..+.+. |....+.+.+|+..+++..++.|
T Consensus 178 Va~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~E 257 (372)
T KOG2711|consen 178 VANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLE 257 (372)
T ss_pred HHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHH
Confidence 7766543233333333 33334777777666555544331 55566778899999999999999
Q ss_pred HHHHHHHc-CC-CHHHHHHHHhhcCCC--ccccccCCCCCCcccC-CCCCC-CCC-CCcchhhHHHHHHHHHHHHHHcCC
Q 022170 190 ALTLGQSL-GI-SASTLTKILNSSSAR--CWSSDSYNPVPGVMEG-VPASR-NYG-GGFASKLMAKDLNLALASAKEVGV 262 (301)
Q Consensus 190 ~~~l~~~~-G~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~kd~~~~~~~a~~~g~ 262 (301)
+..|++.+ .- .++++++.-+..+.- +..-+++.-...+..+ ..+.. +-. ...+.-.+....+.+++++++.++
T Consensus 258 m~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~~~l 337 (372)
T KOG2711|consen 258 MIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYELLQKKGL 337 (372)
T ss_pred HHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHHHHHcCh
Confidence 99999986 33 566665543332110 1111121111111110 00000 000 011133455677889999999998
Q ss_pred --CchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCCC
Q 022170 263 --DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 298 (301)
Q Consensus 263 --~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 298 (301)
..|++.++|++.. ++....++++.++..+
T Consensus 338 ~~kfPlftaVykI~~-------~~~~~~~lle~l~~~~ 368 (372)
T KOG2711|consen 338 VEKFPLFTAVYKICY-------ERLPPQALLECLRNHP 368 (372)
T ss_pred hhhCcHHHHHHHHHh-------cCCCHHHHHHHHhccc
Confidence 8999999999874 4557778888776544
No 99
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.69 E-value=8.7e-08 Score=78.93 Aligned_cols=242 Identities=13% Similarity=0.135 Sum_probs=146.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----------------------------CCCCCCCHHHHHhcCCEEE
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----------------------------GVPTKETPFEVAEASDVVI 51 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----------------------------g~~~~~s~~e~~~~adiVi 51 (301)
||+++|+..+..||+|+++|+|++...+..+. .++.+++..+++.++|+||
T Consensus 22 MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dadlii 101 (298)
T KOG2304|consen 22 MGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDADLII 101 (298)
T ss_pred cchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhHHHH
Confidence 89999999999999999999999887654331 1445677788889999999
Q ss_pred EecCCCccchhhhhcC-CCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec-ccCCCHHH
Q 022170 52 TMLPSSSHQVLDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLA 129 (301)
Q Consensus 52 ~~vp~~~~~~~~v~~~-~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~~~~ 129 (301)
.++-...+ ++.-+++ ++... ++. .++- |+++.-...+++..+.+ +.+..|.||+.+ |+.--. .
T Consensus 102 EAivEn~d-iK~~lF~~l~~~a-----k~~-~il~-tNTSSl~lt~ia~~~~~------~srf~GlHFfNPvPvMKLv-E 166 (298)
T KOG2304|consen 102 EAIVENLD-IKRKLFKDLDKIA-----KSS-TILA-TNTSSLSLTDIASATQR------PSRFAGLHFFNPVPVMKLV-E 166 (298)
T ss_pred HHHHHhHH-HHHHHHHHHHhhc-----ccc-eEEe-ecccceeHHHHHhhccC------hhhhceeeccCCchhHHHh-h
Confidence 98887766 5544433 33333 232 3332 33332223345544433 122235777765 333211 1
Q ss_pred hhccceEEEecCCHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 130 AEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 130 a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
..... -.+++.|..+-.+-+.+|+.++.+-+ +| . +.|-+. +-.+.|++++.++...+.|++-.++
T Consensus 167 Vir~~-----~TS~eTf~~l~~f~k~~gKttVackDtpG--F----IVNRlL---iPyl~ea~r~yerGdAskeDIDtaM 232 (298)
T KOG2304|consen 167 VIRTD-----DTSDETFNALVDFGKAVGKTTVACKDTPG--F----IVNRLL---IPYLMEAIRMYERGDASKEDIDTAM 232 (298)
T ss_pred hhcCC-----CCCHHHHHHHHHHHHHhCCCceeecCCCc--h----hhhHHH---HHHHHHHHHHHHhcCCcHhhHHHHH
Confidence 10110 12578888888898999998888765 43 2 223332 3667999999999999999999999
Q ss_pred hhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH--HHcCCCchHHHHHHHHHHHHHHCCCCCCc
Q 022170 209 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA--KEVGVDCPLTSQAQDIYAKLCENGHDSKD 286 (301)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a--~~~g~~~p~~~~~~~~~~~a~~~g~g~~d 286 (301)
..|++. ++ +|.. + -||-+ ++...--++-.++.- ...-.|.|+++....--+...+.|.|..+
T Consensus 233 klGagy-PM----GPfE-------L-~DyvG---LDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~ 296 (298)
T KOG2304|consen 233 KLGAGY-PM----GPFE-------L-ADYVG---LDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYK 296 (298)
T ss_pred hccCCC-CC----ChHH-------H-HHHhh---HHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCcccee
Confidence 888642 11 1110 0 12211 222222222222221 12235789888888777777788887766
Q ss_pred h
Q 022170 287 F 287 (301)
Q Consensus 287 ~ 287 (301)
|
T Consensus 297 Y 297 (298)
T KOG2304|consen 297 Y 297 (298)
T ss_pred c
Confidence 5
No 100
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.64 E-value=1.5e-06 Score=77.28 Aligned_cols=250 Identities=15% Similarity=0.186 Sum_probs=144.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC------------CCCHHHHHhcCCEEEEecCCCccchhhhhcCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT------------KETPFEVAEASDVVITMLPSSSHQVLDVYNGP 68 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~------------~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~ 68 (301)
||+-++..|.++|++|+++.|++. ++++++.|+.. +....+....+|+||+++...+ +.+++...
T Consensus 11 vG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q--~~~al~~l 87 (307)
T COG1893 11 IGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ--LEEALPSL 87 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc--HHHHHHHh
Confidence 689999999999999999999887 78888865221 2233345568999999999655 78888766
Q ss_pred CccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHH---Hhhccce--EEEecCCH
Q 022170 69 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL---AAEAGTL--TFMVGGSE 143 (301)
Q Consensus 69 ~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~---~a~~g~l--~~~~gg~~ 143 (301)
.+++. +...+++--.+..-.+ .+.+..... ....++.+..+--- ++. ....|.. ..+.|+++
T Consensus 88 ~~~~~----~~t~vl~lqNG~g~~e--~l~~~~~~~------~il~G~~~~~a~~~-~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 88 APLLG----PNTVVLFLQNGLGHEE--ELRKILPKE------TVLGGVTTHGAVRE-GPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred hhcCC----CCcEEEEEeCCCcHHH--HHHHhCCcc------eEEEEEeeeeeEec-CCceEEEecCCcEEEccCCCCch
Confidence 55553 2223444445554443 554544321 00011212111111 111 1111221 22234455
Q ss_pred HHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcC--CC
Q 022170 144 DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLG--IS 200 (301)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~---------------------~~~~~~~~E~~~l~~~~G--~~ 200 (301)
+.++.+.++|+.-+..+.+..++-...-.|++-|.-. ......+.|....+++.| ++
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~ 234 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELP 234 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 6788888888887777666555555555565544433 335678899999999999 45
Q ss_pred HHHHHHHHhhcCCCccccccCCC-CCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022170 201 ASTLTKILNSSSARCWSSDSYNP-VPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 279 (301)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 279 (301)
.+.+.++........ ..++.. ..++..++..+ .--=...+++.++++|+++|..+.++++.+....
T Consensus 235 ~~~~~~v~~~~~~~~--~~~~sSM~qDl~~gr~tE-----------id~i~G~vv~~a~~~gi~~P~~~~L~~lvk~~e~ 301 (307)
T COG1893 235 EEVVERVLAVIRATD--AENYSSMLQDLEKGRPTE-----------IDAINGAVVRLAKKHGLATPVNDTLYALLKAKEA 301 (307)
T ss_pred HHHHHHHHHHHHhcc--cccCchHHHHHHcCCccc-----------HHHHhhHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 543333333221110 001100 11111221111 1122358999999999999999999999887654
No 101
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.61 E-value=1.4e-06 Score=77.55 Aligned_cols=251 Identities=17% Similarity=0.103 Sum_probs=135.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCC------------CCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTK------------ETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~------------~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
||+-+|..|.++|++|++++|+++.++.+.+. |+... .+. +.....|+||+|+.... +.+++..
T Consensus 13 iG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~-~~~~~~D~viv~vK~~~--~~~al~~ 89 (305)
T PRK05708 13 LGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETA-DAAEPIHRLLLACKAYD--AEPAVAS 89 (305)
T ss_pred HHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCc-ccccccCEEEEECCHHh--HHHHHHH
Confidence 68999999999999999999998888878754 32211 111 12346899999999654 6777765
Q ss_pred CCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh-ccceEEEecC-CHHH
Q 022170 68 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE-AGTLTFMVGG-SEDA 145 (301)
Q Consensus 68 ~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~-~g~l~~~~gg-~~~~ 145 (301)
..+.+. +...++.--.++.... .+.+.+....+ .. ++.++.+-.. +|.... .+.-.+.+|. +.+.
T Consensus 90 l~~~l~----~~t~vv~lQNGv~~~e--~l~~~~~~~~v--~~----g~~~~ga~~~-~pg~v~~~~~g~~~~G~~~~~~ 156 (305)
T PRK05708 90 LAHRLA----PGAELLLLQNGLGSQD--AVAARVPHARC--IF----ASSTEGAFRD-GDWRVVFAGHGFTWLGDPRNPT 156 (305)
T ss_pred HHhhCC----CCCEEEEEeCCCCCHH--HHHHhCCCCcE--EE----EEeeeceecC-CCCEEEEeceEEEEEcCCCCcc
Confidence 444442 2333444445665432 33333322100 00 1122211111 111111 1111233443 2234
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCC--HHHHH
Q 022170 146 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA------------------VSMLGVSEALTLGQSLGIS--ASTLT 205 (301)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~------------------~~~~~~~E~~~l~~~~G~~--~~~~~ 205 (301)
.+.+.++|+.-+.++....++-...-.|++.|.... .....+.|+..++++.|++ .+.+.
T Consensus 157 ~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~ 236 (305)
T PRK05708 157 APAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLH 236 (305)
T ss_pred hHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 456667777666555544455555666766555321 2456789999999999975 22233
Q ss_pred HHHhh---cCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH-HCC
Q 022170 206 KILNS---SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC-ENG 281 (301)
Q Consensus 206 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~-~~g 281 (301)
+.+.. .+.....| -..++..++..+=++ =...++++++++|+++|..+.+++..+... +.|
T Consensus 237 ~~~~~~~~~~~~~~sS----M~qD~~~gR~tEid~-----------i~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~~~ 301 (305)
T PRK05708 237 EEVQRVIQATAANYSS----MYQDVRAGRRTEISY-----------LLGYACRAADRHGLPLPRLQHLQQRLVAHLRARG 301 (305)
T ss_pred HHHHHHHHhccCCCcH----HHHHHHcCCceeehh-----------hhhHHHHHHHHcCCCCchHHHHHHHHHHHHHhcC
Confidence 32221 11110000 011122222211111 135899999999999999999998766554 445
Q ss_pred C
Q 022170 282 H 282 (301)
Q Consensus 282 ~ 282 (301)
.
T Consensus 302 ~ 302 (305)
T PRK05708 302 L 302 (305)
T ss_pred C
Confidence 4
No 102
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.52 E-value=2.3e-07 Score=74.08 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=66.4
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CC----CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GV----PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~----~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||.+++..|.+.| ++|++|||++++.+.+.+. +. ....++.+++.++|+|++|+|.+...+..+......
T Consensus 30 ~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~---- 105 (155)
T cd01065 30 AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDELPLPPSL---- 105 (155)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCCCCCHHH----
Confidence 6889999999986 8899999999988776554 32 234577777899999999999654101222221111
Q ss_pred CCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
..++++++|+++..+.+ .+.+.+.+
T Consensus 106 --~~~~~~v~D~~~~~~~~--~l~~~~~~ 130 (155)
T cd01065 106 --LKPGGVVYDVVYNPLET--PLLKEARA 130 (155)
T ss_pred --cCCCCEEEEcCcCCCCC--HHHHHHHH
Confidence 23568999999986654 66666654
No 103
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.49 E-value=2.7e-06 Score=75.77 Aligned_cols=138 Identities=20% Similarity=0.172 Sum_probs=88.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcC-ChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.++|.+|.++|++|+++++ ++++.+.+.+.|+.. .++.+++++||+|++++|+... ...+.....+.+ .+
T Consensus 14 mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ei~~~l-----~~ 86 (314)
T TIGR00465 14 QGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-GTVEEAIPQADLIMNLLPDEVQ-HEVYEAEIQPLL-----KE 86 (314)
T ss_pred HHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-CCHHHHHhcCCEEEEeCCcHhH-HHHHHHHHHhhC-----CC
Confidence 799999999999999887654 445666666778765 4688899999999999996534 555543332222 24
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCc-eEEecccCCCH-H----HhhccceEEE-ecC--CHHHHHHHH
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP-VMLDAPVSGGV-L----AAEAGTLTFM-VGG--SEDAYQAAK 150 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~pv~g~~-~----~a~~g~l~~~-~gg--~~~~~~~~~ 150 (301)
+.+|.-+.++.....+ ..++. +. .+.-+|-..+. . ....|...++ +.- +.+..+.+.
T Consensus 87 g~iVs~aaG~~i~~~~---~~~~~-----------~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~ 152 (314)
T TIGR00465 87 GKTLGFSHGFNIHFVQ---IVPPK-----------DVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIAL 152 (314)
T ss_pred CcEEEEeCCccHhhcc---ccCCC-----------CCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHH
Confidence 5566666777765432 22221 12 23455655443 1 1134543333 433 466788999
Q ss_pred HHHHhcCCC
Q 022170 151 PLFLSMGKN 159 (301)
Q Consensus 151 ~ll~~~~~~ 159 (301)
.+++.+|..
T Consensus 153 ~~~~~iG~~ 161 (314)
T TIGR00465 153 AYAKAIGGG 161 (314)
T ss_pred HHHHHcCCC
Confidence 999999976
No 104
>PRK07574 formate dehydrogenase; Provisional
Probab=98.41 E-value=1.1e-06 Score=80.22 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=79.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|.+|.+|||++...+.....|+....+++|+++.||+|++++|...+ .+.++. +..++. .++|
T Consensus 203 IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~-T~~li~--~~~l~~--mk~g 277 (385)
T PRK07574 203 IGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPE-TEHLFD--ADVLSR--MKRG 277 (385)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHH-HHHHhC--HHHHhc--CCCC
Confidence 68999999999999999999987544444455666667999999999999999998887 888874 345554 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++....-....+.+.+.+
T Consensus 278 a~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 278 SYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred cEEEECCCCchhhHHHHHHHHHh
Confidence 99999999888888888888865
No 105
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.39 E-value=9e-07 Score=77.53 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=53.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|.++|+.|++|++... ++++.+++||+||+|++.+.. +..++ + .+|
T Consensus 171 vG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~-v~~~~------i-----k~G 224 (301)
T PRK14194 171 VGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRL-IDADW------L-----KPG 224 (301)
T ss_pred cHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhc-ccHhh------c-----cCC
Confidence 899999999999999999987632 789999999999999998776 66654 2 357
Q ss_pred eEEEEeCCC
Q 022170 81 QLLIDSSTI 89 (301)
Q Consensus 81 ~ivid~st~ 89 (301)
.++||+|..
T Consensus 225 aiVIDvgin 233 (301)
T PRK14194 225 AVVIDVGIN 233 (301)
T ss_pred cEEEEeccc
Confidence 899999863
No 106
>PLN03139 formate dehydrogenase; Provisional
Probab=98.37 E-value=1.7e-06 Score=78.95 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=80.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|.+|.+|||++...+...+.|+....++++++..||+|++++|...+ .+.++.. ..++. .+++
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~-T~~li~~--~~l~~--mk~g 284 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEK-TRGMFNK--ERIAK--MKKG 284 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHH-HHHHhCH--HHHhh--CCCC
Confidence 68999999999999999999986554445556777777999999999999999998887 8888743 45654 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++....-....+.+.+.+
T Consensus 285 a~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 285 VLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred eEEEECCCCchhhHHHHHHHHHc
Confidence 99999998888878888888765
No 107
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.34 E-value=4.2e-05 Score=64.49 Aligned_cols=186 Identities=22% Similarity=0.252 Sum_probs=112.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhh-----HHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNV-----MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~-----~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|..||..++++||+|...+.|.+. .+++...|.+.+++..++++.+++.++.+|.... .-.+.. .++++
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~-T~~Iar---ei~~h-- 106 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKA-TFGIAR---EILEH-- 106 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchh-hHHHHH---HHHhh--
Confidence 788999999999999998765543 4566778999999999999999999999998754 444443 24443
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCce-EEecccCCCHHHhhccceEEEec----C----CHHHHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV-MLDAPVSGGVLAAEAGTLTFMVG----G----SEDAYQ 147 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~pv~g~~~~a~~g~l~~~~g----g----~~~~~~ 147 (301)
.+.|.++.++.|++|-..-.-.+..-+ .+ +. ..|+. +..+.+=|.|.+ +- ++..| | .++-.+
T Consensus 107 vpEgAVicnTCT~sp~vLy~~LE~~Lr--~k-R~--dVGvssmHPAgvPGtp~h---~~-yviagr~t~g~elATeEQi~ 177 (340)
T COG4007 107 VPEGAVICNTCTVSPVVLYYSLEGELR--TK-RE--DVGVSSMHPAGVPGTPQH---GH-YVIAGRSTEGKELATEEQIE 177 (340)
T ss_pred CcCCcEecccccCchhHHHHHhhhhhc--Cc-hh--hcCccccCCCCCCCCCCC---ce-EEEeccCCCceeeccHHHHH
Confidence 467889999999988654333222211 00 00 01122 222233344432 11 22221 1 355678
Q ss_pred HHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHH
Q 022170 148 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISAST 203 (301)
Q Consensus 148 ~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~-~~G~~~~~ 203 (301)
++..+.+..|+.++.+- ..--+++-=....+.+..+.++.+-+..+. -.|.+.+.
T Consensus 178 r~velaes~Gk~~yv~p-adv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eM 233 (340)
T COG4007 178 RCVELAESTGKEVYVLP-ADVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEM 233 (340)
T ss_pred HHHHHHHhcCCceEecC-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 88899999999877663 222222222234444555555556555554 24555443
No 108
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.27 E-value=2.1e-06 Score=75.34 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=51.3
Q ss_pred CcHHHHHHHHhCCCeEEEEc-CChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHD-VNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~d-r~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.+||.+|.++|++|++|+ |++ ++++++++||+|++|++.+.. ++.++ + .+
T Consensus 170 mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~-v~~~~------l-----k~ 222 (296)
T PRK14188 170 VGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEM-VKGDW------I-----KP 222 (296)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhh-cchhe------e-----cC
Confidence 89999999999999999995 765 468889999999999998765 66544 2 35
Q ss_pred CeEEEEeCCC
Q 022170 80 PQLLIDSSTI 89 (301)
Q Consensus 80 ~~ivid~st~ 89 (301)
|.++||++..
T Consensus 223 GavVIDvGin 232 (296)
T PRK14188 223 GATVIDVGIN 232 (296)
T ss_pred CCEEEEcCCc
Confidence 7899999863
No 109
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.27 E-value=1.9e-06 Score=75.97 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=61.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|++|...|++|++|+|.....+.....|... .+++++++.||+|++++|++. .+.++. +++++. ..++
T Consensus 27 IG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~--t~~V~~--~eil~~--MK~G 99 (335)
T PRK13403 27 QGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQ--QAHVYK--AEVEEN--LREG 99 (335)
T ss_pred HHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChH--HHHHHH--HHHHhc--CCCC
Confidence 799999999999999999987655555555567765 489999999999999999754 567774 235554 3456
Q ss_pred eEEEEeCCC
Q 022170 81 QLLIDSSTI 89 (301)
Q Consensus 81 ~ivid~st~ 89 (301)
.+++-+-+.
T Consensus 100 aiL~f~hgf 108 (335)
T PRK13403 100 QMLLFSHGF 108 (335)
T ss_pred CEEEECCCc
Confidence 666655443
No 110
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.26 E-value=2.8e-06 Score=76.50 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=75.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|+.|...|++|.+|||++.... ....+.. ..++++++++||+|++++|...+ .+.++.. ..++. .+++
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~-T~~~i~~--~~~~~--mk~g 233 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKE-TYHMINE--ERLKL--MKPT 233 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChH-HhhccCH--HHHhc--CCCC
Confidence 689999999999999999999876432 2333544 35899999999999999998776 7777643 34544 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+|....-....+.+.+.+
T Consensus 234 a~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 234 AILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred eEEEECcCchhcCHHHHHHHHHc
Confidence 99999999888888888888765
No 111
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.24 E-value=3e-06 Score=75.12 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=73.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-CCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||..+|+.|...|++|++|||+... .+... ..++++++++||+|++++|...+ .+.++. .+.+.. .++
T Consensus 133 IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~-T~~li~--~~~l~~--mk~ 201 (303)
T PRK06436 133 IGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDE-TRGMIN--SKMLSL--FRK 201 (303)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCch-hhcCcC--HHHHhc--CCC
Confidence 6899999888889999999998532 23322 56899999999999999998877 777764 234544 457
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+.++|++|...+-....+.+.+.+
T Consensus 202 ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 202 GLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred CeEEEECCCccccCHHHHHHHHHc
Confidence 899999999988888888888765
No 112
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.19 E-value=5.4e-06 Score=74.52 Aligned_cols=94 Identities=15% Similarity=0.240 Sum_probs=70.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+++|+.|...|++|++|||+++..... ...+.++.+++++||+|++++|...+ .+.++. +..++. .+++
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~-t~~li~--~~~l~~--mk~g 227 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKE-SYHLFD--KAMFDH--VKKG 227 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHH-HHHHHh--HHHHhc--CCCC
Confidence 68999999999999999999998754322 23456899999999999999998765 666664 245544 3577
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-....+.+.+.+
T Consensus 228 avlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 228 AILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred cEEEEcCCccccCHHHHHHHHHc
Confidence 89999986555455566666654
No 113
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.18 E-value=9.8e-06 Score=67.07 Aligned_cols=178 Identities=15% Similarity=0.211 Sum_probs=117.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH-----------hCC--------------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG--------------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~-----------~~g--------------~~~~~s~~e~~~~adiVi~~vp 55 (301)
.|++.|..|+..||+|..||+.++.+.... +.| +..++++.|+++++=.|--|+|
T Consensus 14 ~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcvp 93 (313)
T KOG2305|consen 14 VGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQECVP 93 (313)
T ss_pred ccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhch
Confidence 478899999999999999999987654322 222 4567899999999999999999
Q ss_pred CCccchh-hhhcCCCccccCCCCCCCeEEEEeCCC--CHHHHHHHHHHHhhchhhhccCCCCCceEEeccc----CCCHH
Q 022170 56 SSSHQVL-DVYNGPNGLLQGGNSVRPQLLIDSSTI--DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV----SGGVL 128 (301)
Q Consensus 56 ~~~~~~~-~v~~~~~~~l~~~~~~~~~ivid~st~--~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv----~g~~~ 128 (301)
.+-. ++ +++.+.+.++. ..+|+-.||. .|+ +.-+..+.. . -..+..|+ +-.-
T Consensus 94 E~L~-lkk~ly~qlD~i~d------~~tIlaSSTSt~mpS--~~s~gL~~k------~-----q~lvaHPvNPPyfiPL- 152 (313)
T KOG2305|consen 94 EDLN-LKKQLYKQLDEIAD------PTTILASSTSTFMPS--KFSAGLINK------E-----QCLVAHPVNPPYFIPL- 152 (313)
T ss_pred HhhH-HHHHHHHHHHHhcC------CceEEeccccccChH--HHhhhhhhh------h-----heeEecCCCCCcccch-
Confidence 8866 43 34444454542 2355555443 444 222222221 0 13344443 3221
Q ss_pred HhhccceEEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 022170 129 AAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 205 (301)
Q Consensus 129 ~a~~g~l~~~~g---g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~ 205 (301)
+=++- ..++.+++.+.+++.+|-+++.....-.|.++.-+. .+.++|..+|....+++..++-
T Consensus 153 -------vElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq-------~Ailne~wrLvasGil~v~dvD 218 (313)
T KOG2305|consen 153 -------VELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQ-------YAILNETWRLVASGILNVNDVD 218 (313)
T ss_pred -------heeccCCCCChhHHHHHHHHHHHhCCCCcccccccccceecccc-------HHHHHHHHHHHHccCcchhhHH
Confidence 11121 267889999999999998777765544444544332 3556999999999999999998
Q ss_pred HHHhhcCC
Q 022170 206 KILNSSSA 213 (301)
Q Consensus 206 ~~~~~~~~ 213 (301)
.+++.|-|
T Consensus 219 ~VmS~GLG 226 (313)
T KOG2305|consen 219 AVMSAGLG 226 (313)
T ss_pred HHHhcCCC
Confidence 99988854
No 114
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.18 E-value=5.6e-06 Score=74.54 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=71.8
Q ss_pred CcHHHHHHHH-hCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||+++|+.|+ ..|.+|++||+++.... ..++....++++++++||+|++++|.... .+.++ + ...++. .++
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~-t~~li-~-~~~l~~--mk~ 228 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKY-NHYLF-N-ADLFKH--FKK 228 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcc-hhhhc-C-HHHHhc--CCC
Confidence 6899999994 46889999999875431 22345567899999999999999998765 55443 2 224443 357
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+.++||+|.........+.+.+.+
T Consensus 229 gailIN~sRG~~vd~~aL~~aL~~ 252 (332)
T PRK08605 229 GAVFVNCARGSLVDTKALLDALDN 252 (332)
T ss_pred CcEEEECCCCcccCHHHHHHHHHh
Confidence 789999999998888888888865
No 115
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.02 E-value=0.00026 Score=58.72 Aligned_cols=118 Identities=12% Similarity=0.148 Sum_probs=77.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..++..|.++||.|+ +.+||+||+|+|-.. +.+++... .
T Consensus 12 mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~--~~~~i~~~----------~- 52 (197)
T PRK06444 12 LGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDA--ALNYIESY----------D- 52 (197)
T ss_pred HHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHH--HHHHHHHh----------C-
Confidence 89999999999999986 258999999999543 56666431 1
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhcc--ceEEEec--CCHHHHHHHHHHHHh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAG--TLTFMVG--GSEDAYQAAKPLFLS 155 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g--~l~~~~g--g~~~~~~~~~~ll~~ 155 (301)
.+++|.+++.-... +. . ..|+ ..|++|. ..+..+ ...+++. .+++..+.++.+++
T Consensus 53 ~~v~Dv~SvK~~i~----~~-~-------------~~~vg~HPMfGp-~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~- 112 (197)
T PRK06444 53 NNFVEISSVKWPFK----KY-S-------------GKIVSIHPLFGP-MSYNDGVHRTVIFINDISRDNYLNEINEMFR- 112 (197)
T ss_pred CeEEeccccCHHHH----Hh-c-------------CCEEecCCCCCC-CcCcccccceEEEECCCCCHHHHHHHHHHHc-
Confidence 37889999887421 11 0 2344 4688873 333221 2233342 25567788899988
Q ss_pred cCCCeEeeCCcchHHHHHHHHHH
Q 022170 156 MGKNTIYCGGAGNGAAAKICNNL 178 (301)
Q Consensus 156 ~~~~~~~~g~~g~a~~~k~~~N~ 178 (301)
|.+++.+.+...-..+-+++.+
T Consensus 113 -G~~~~~~t~eeHD~~~A~ishL 134 (197)
T PRK06444 113 -GYHFVEMTADEHDLLMSEIMVK 134 (197)
T ss_pred -CCEEEEeCHHHHHHHHHHHHHH
Confidence 6788888765555555555444
No 116
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.96 E-value=2.1e-05 Score=64.42 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=69.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|+.|..-|.+|++|||+..........+. ...+++|+++.||+|++++|-..+ .+.++.. ..++. .+++
T Consensus 47 IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~-T~~li~~--~~l~~--mk~g 120 (178)
T PF02826_consen 47 IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPE-TRGLINA--EFLAK--MKPG 120 (178)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTT-TTTSBSH--HHHHT--STTT
T ss_pred CcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccc-cceeeee--eeeec--cccc
Confidence 4889999999999999999999887765556666 346999999999999999996655 5655532 24443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 121 a~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 121 AVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp EEEEESSSGGGB-HHHHHHHHHT
T ss_pred eEEEeccchhhhhhhHHHHHHhh
Confidence 99999886554444566666654
No 117
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.94 E-value=1.7e-05 Score=70.70 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=70.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++||+++++...... .....++++++++||+|++++|...+ .+.++.. ..+.. .+++
T Consensus 147 IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~-T~~li~~--~~l~~--mk~g 219 (312)
T PRK15469 147 LGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPE-TVGIINQ--QLLEQ--LPDG 219 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHH-HHHHhHH--HHHhc--CCCC
Confidence 6899999999999999999998765322111 11235889999999999999998877 8877742 34554 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 220 a~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 220 AYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred cEEEECCCccccCHHHHHHHHhc
Confidence 89999985544444566666654
No 118
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.94 E-value=2.3e-05 Score=74.91 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=75.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|+.|...|++|++||+.... +...+.|....+++++++++||+|++++|...+ .+.++. ...++. .+++
T Consensus 149 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~-T~~li~--~~~l~~--mk~g 222 (525)
T TIGR01327 149 IGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPE-TRGLIG--AEELAK--MKKG 222 (525)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChh-hccCcC--HHHHhc--CCCC
Confidence 6899999999999999999985322 223445666667899999999999999998776 777763 234544 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++....-....+.+.+.+
T Consensus 223 a~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 223 VIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred eEEEEcCCCceeCHHHHHHHHHc
Confidence 99999998877777778777765
No 119
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=3.2e-05 Score=67.38 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=50.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||..|.++|+.|++|... +.++++.+++||+||++++.+.. ++..+ + .+|
T Consensus 170 vG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~-v~~~~------i-----k~G 223 (284)
T PRK14179 170 VGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHF-VTKEF------V-----KEG 223 (284)
T ss_pred CcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCcccc-CCHHH------c-----cCC
Confidence 8999999999999999999321 23788999999999999998776 66544 2 357
Q ss_pred eEEEEeCCC
Q 022170 81 QLLIDSSTI 89 (301)
Q Consensus 81 ~ivid~st~ 89 (301)
.++||++..
T Consensus 224 avVIDvgin 232 (284)
T PRK14179 224 AVVIDVGMN 232 (284)
T ss_pred cEEEEecce
Confidence 899999853
No 120
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.93 E-value=4.3e-05 Score=67.38 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=62.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||.++|+.|...|++|++++|++++.+.+.+.|.... .++.+.+.++|+||.++|.... .++.+ +. ..
T Consensus 162 iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii-~~~~l-------~~--~k 231 (287)
T TIGR02853 162 TGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVL-TADVL-------SK--LP 231 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHh-CHHHH-------hc--CC
Confidence 6899999999999999999999988877776665433 3567788999999999995432 22222 21 23
Q ss_pred CCeEEEEeCCCCHHH
Q 022170 79 RPQLLIDSSTIDPQT 93 (301)
Q Consensus 79 ~~~ivid~st~~p~~ 93 (301)
++.++||+++..-.+
T Consensus 232 ~~aliIDlas~Pg~t 246 (287)
T TIGR02853 232 KHAVIIDLASKPGGT 246 (287)
T ss_pred CCeEEEEeCcCCCCC
Confidence 568999999865554
No 121
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.91 E-value=2.4e-05 Score=74.80 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=74.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||+... +.....|+..+ +++++++.||+|++++|...+ .+.++.. ..++. .+++
T Consensus 151 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~-t~~li~~--~~l~~--mk~g 223 (526)
T PRK13581 151 IGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPE-TRGLIGA--EELAK--MKPG 223 (526)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChH-hhcCcCH--HHHhc--CCCC
Confidence 6899999999999999999986432 23344566655 899999999999999998776 7777742 35544 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++....-....+.+.+.+
T Consensus 224 a~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 224 VRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred eEEEECCCCceeCHHHHHHHHhc
Confidence 99999998877777778777764
No 122
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.83 E-value=2.6e-05 Score=69.74 Aligned_cols=90 Identities=10% Similarity=0.019 Sum_probs=64.1
Q ss_pred CcHHHHHHHH--hCCCeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLM--KAGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~--~~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||..++..+. +...+|++|||++++.+.+.+. | +..+.++++++.++|+|+.|.|.+. .++.. ..+
T Consensus 136 ~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~----pvl~~--~~l 209 (314)
T PRK06141 136 LASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTE----PLVRG--EWL 209 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCC----CEecH--HHc
Confidence 5777777444 4457899999999998887664 4 4556889999999999988888432 33322 122
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
.+|. +|++.+..+...+++...+.
T Consensus 210 -----~~g~-~i~~ig~~~~~~~El~~~~~ 233 (314)
T PRK06141 210 -----KPGT-HLDLVGNFTPDMRECDDEAI 233 (314)
T ss_pred -----CCCC-EEEeeCCCCcccccCCHHHH
Confidence 2444 88898888877778776554
No 123
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=97.80 E-value=7.6e-07 Score=70.38 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhhcC----CCccccccCCCCCCcccC-CCCCCCCC--
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS-TLTKILNSSS----ARCWSSDSYNPVPGVMEG-VPASRNYG-- 238 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~-- 238 (301)
|....+++..|+..+.++.++.|+..+++.+|-+++ ++++..+.++ +.+..++++..+..+..+ ...+...+
T Consensus 21 Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~~~G~~l~~g~~~~~~~~~~~ 100 (149)
T PF07479_consen 21 GIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNRRFGKALGKGGKSIEEAEKEM 100 (149)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcHHHHHHHHccCCCHHHHHHhh
Confidence 566677888999999999999999999999999999 8877666653 334345555443333332 11100000
Q ss_pred CCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 022170 239 GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 275 (301)
Q Consensus 239 ~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 275 (301)
......++...++.+.+++++.++++|++.++++++.
T Consensus 101 ~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~ 137 (149)
T PF07479_consen 101 LGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILY 137 (149)
T ss_dssp TTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHc
Confidence 0123567888899999999999999999999999875
No 124
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00053 Score=60.32 Aligned_cols=145 Identities=15% Similarity=0.149 Sum_probs=99.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH-hCCCCCCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~-~~g~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||.-+|.-|.++||.|.+.+|+. .+.++ ..|....+.+.+.+ +.+|+|++|+.-- . +..++.-. -. ....
T Consensus 63 mGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsil-s-iekilaty---pf-qrlr 134 (480)
T KOG2380|consen 63 MGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-S-IEKILATY---PF-QRLR 134 (480)
T ss_pred HHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehhh-h-HHHHHHhc---Cc-hhhc
Confidence 78999999999999999999986 44443 44777777888776 5799999999843 3 67776432 11 1124
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccc-eEEEe----cCC----HHHHHH
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGT-LTFMV----GGS----EDAYQA 148 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~-l~~~~----gg~----~~~~~~ 148 (301)
.|++++|..+..--......+.+++ ++..+ ..|++|........+ +.++. .|+ ++-++.
T Consensus 135 rgtlfvdvlSvKefek~lfekYLPk-----------dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~ 203 (480)
T KOG2380|consen 135 RGTLFVDVLSVKEFEKELFEKYLPK-----------DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEF 203 (480)
T ss_pred cceeEeeeeecchhHHHHHHHhCcc-----------ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHH
Confidence 6789999988876666666666653 24444 457887652211112 12222 343 678899
Q ss_pred HHHHHHhcCCCeEeeC
Q 022170 149 AKPLFLSMGKNTIYCG 164 (301)
Q Consensus 149 ~~~ll~~~~~~~~~~g 164 (301)
+.++|.+.+.+.+++.
T Consensus 204 fleIf~cegckmVemS 219 (480)
T KOG2380|consen 204 FLEIFACEGCKMVEMS 219 (480)
T ss_pred HHHHHHhcCCeEEEEE
Confidence 9999999999988885
No 125
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.71 E-value=6.6e-05 Score=59.46 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=54.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
|.+.|.||.++|++|++..|..+ ..++..+.|.++ .+.+|+++.+|+|++.+||.. ..+++.. .+.+. ..+|
T Consensus 16 G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD~~--q~~vy~~--~I~p~--l~~G 88 (165)
T PF07991_consen 16 GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPDEV--QPEVYEE--EIAPN--LKPG 88 (165)
T ss_dssp HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-HHH--HHHHHHH--HHHHH--S-TT
T ss_pred HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCChHH--HHHHHHH--HHHhh--CCCC
Confidence 78999999999999999888766 677888888876 589999999999999999654 5677632 13332 2456
Q ss_pred eEEEEeCC
Q 022170 81 QLLIDSST 88 (301)
Q Consensus 81 ~ivid~st 88 (301)
++++-..+
T Consensus 89 ~~L~fahG 96 (165)
T PF07991_consen 89 ATLVFAHG 96 (165)
T ss_dssp -EEEESSS
T ss_pred CEEEeCCc
Confidence 67775554
No 126
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.68 E-value=0.00011 Score=64.33 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=61.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCCCCCCHHHH-HhcCCEEEEecCCCcc-chhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFEV-AEASDVVITMLPSSSH-QVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~e~-~~~adiVi~~vp~~~~-~~~~v~~~~~~~l~~ 74 (301)
||.+++..|++.|++|+++||++++.+.+.+. +.....++.+. ..++|+||.|+|.... ...++... ...+
T Consensus 128 ~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~-~~~l-- 204 (270)
T TIGR00507 128 AARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVP-AEKL-- 204 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCC-HHHc--
Confidence 58899999999999999999999988777653 22122234333 3579999999996421 02211110 0112
Q ss_pred CCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++.+++|+++..+.| .+.+..++
T Consensus 205 ---~~~~~v~D~~y~p~~T--~ll~~A~~ 228 (270)
T TIGR00507 205 ---KEGMVVYDMVYNPGET--PFLAEAKS 228 (270)
T ss_pred ---CCCCEEEEeccCCCCC--HHHHHHHH
Confidence 3567999999988776 45555543
No 127
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.61 E-value=0.00025 Score=62.08 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=65.9
Q ss_pred CcHHHHHHHHhC--CCeEE-EEcCChhhHHHHHhC-C-CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-G-VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~~~-g-~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||..++.+|.+. +++|. +|||++++.+.+.+. | ...++++++++.++|+|++|+|++. ..++... .++
T Consensus 17 IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~--h~e~~~~---aL~-- 89 (271)
T PRK13302 17 IGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV--LRAIVEP---VLA-- 89 (271)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH--HHHHHHH---HHH--
Confidence 588899999863 78876 789999998777654 4 3567899999999999999999765 5555532 332
Q ss_pred CCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 76 NSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 76 ~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.|+.++..|.......+++.+.+++
T Consensus 90 ---aGk~Vi~~s~gal~~~~~L~~~A~~ 114 (271)
T PRK13302 90 ---AGKKAIVLSVGALLRNEDLIDLARQ 114 (271)
T ss_pred ---cCCcEEEecchhHHhHHHHHHHHHH
Confidence 2344454565555566777776654
No 128
>PLN02928 oxidoreductase family protein
Probab=97.57 E-value=0.00022 Score=64.57 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=68.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH------------HhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF------------SDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 68 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l------------~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~ 68 (301)
||..+|+.|...|.+|++|||+..+.... ...+. ...++++++++||+|++++|.... .+.++..
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~-T~~li~~- 246 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKE-TAGIVND- 246 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChH-hhcccCH-
Confidence 68999999999999999999974322111 11112 346899999999999999997766 6666642
Q ss_pred CccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 69 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 69 ~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
..++. ++++.++||++-...-.-..+.+.+.+
T Consensus 247 -~~l~~--Mk~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 247 -EFLSS--MKKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred -HHHhc--CCCCeEEEECCCccccCHHHHHHHHHc
Confidence 34544 467899999975544444566666654
No 129
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.56 E-value=0.00027 Score=62.64 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=61.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
+|.+++..|.+.|.+|+++||++++.+.....|.+.. .++.+.+.++|+||.|+|.... .++.+ +. ..
T Consensus 163 iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i-~~~~l-------~~--~~ 232 (296)
T PRK08306 163 TGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVL-TKEVL-------SK--MP 232 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhh-hHHHH-------Hc--CC
Confidence 5889999999999999999999988877777776643 3667888999999999985432 23322 21 23
Q ss_pred CCeEEEEeCCCCHH
Q 022170 79 RPQLLIDSSTIDPQ 92 (301)
Q Consensus 79 ~~~ivid~st~~p~ 92 (301)
++.++||.++....
T Consensus 233 ~g~vIIDla~~pgg 246 (296)
T PRK08306 233 PEALIIDLASKPGG 246 (296)
T ss_pred CCcEEEEEccCCCC
Confidence 56799999875543
No 130
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.54 E-value=0.00038 Score=58.04 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=53.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||..+|+.|.+.|++|+++|+++++.+.+.+. |+...++ .+.. .++|+++.|.....- ..+.+.. .
T Consensus 39 vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I-~~~~~~~----------l 106 (200)
T cd01075 39 VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVI-NDDTIPQ----------L 106 (200)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEeccccccc-CHHHHHH----------c
Confidence 68999999999999999999999988887765 6554443 4444 479999977553332 3333321 1
Q ss_pred CCeEEEEeCCC
Q 022170 79 RPQLLIDSSTI 89 (301)
Q Consensus 79 ~~~ivid~st~ 89 (301)
+.++|++..+.
T Consensus 107 ~~~~v~~~AN~ 117 (200)
T cd01075 107 KAKAIAGAANN 117 (200)
T ss_pred CCCEEEECCcC
Confidence 23577877654
No 131
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.52 E-value=0.00026 Score=64.69 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=68.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCc----cchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS----HQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~----~~~~~v~~~~~~~l~~~~ 76 (301)
||+.+|+.|...|++|.+||+..... .+.....++++++++||+|++++|-.. . .+.++.. ..++.
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~-T~~li~~--~~l~~-- 196 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHP-TRHLLDE--AFLAS-- 196 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCcccc-ccccCCH--HHHhc--
Confidence 68999999999999999999864321 122334689999999999999999643 2 3334321 24443
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.+++.++|++|....-....+.+.+.+
T Consensus 197 mk~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 197 LRPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred CCCCeEEEECCCCcccCHHHHHHHHHh
Confidence 457899999998887777788777754
No 132
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0032 Score=52.52 Aligned_cols=178 Identities=12% Similarity=0.059 Sum_probs=111.8
Q ss_pred HHHH-HHhCCCeEE----EEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 5 MASN-LMKAGYKMA----VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 5 lA~~-L~~~G~~V~----~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
+++. |.++-|.++ +-.|+++.+..+.+.-.-...+.+...+-.+++|+.+|+.. +..+... .+ ..+
T Consensus 21 l~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~--~s~vaa~---~~----~rp 91 (289)
T COG5495 21 LGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDAL--YSGVAAT---SL----NRP 91 (289)
T ss_pred HHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHH--HHHHHHh---cc----cCC
Confidence 3444 556666554 23688888888776533333445555566788999999652 4444321 22 346
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccC-CCHHHhh--ccceEEEecCCHHHHHHHHHHHHhc
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS-GGVLAAE--AGTLTFMVGGSEDAYQAAKPLFLSM 156 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~-g~~~~a~--~g~l~~~~gg~~~~~~~~~~ll~~~ 156 (301)
++++++||+........ ...+ .|+. ...+...-.| |.+.... .++......+|+.-+..++++...+
T Consensus 92 g~iv~HcSga~~~~il~---~~gr------~g~~-~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~em 161 (289)
T COG5495 92 GTIVAHCSGANGSGILA---PLGR------QGCI-PASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEM 161 (289)
T ss_pred CeEEEEccCCCchhhhh---hhhh------cCCc-ceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHh
Confidence 78999999976553332 2222 1210 0112222223 4444443 4564455577887788899999999
Q ss_pred CCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 022170 157 GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 202 (301)
Q Consensus 157 ~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~ 202 (301)
|.++|.+-+ +.--.+....|.........+.++..+.+..|.|.-
T Consensus 162 gg~~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~ 206 (289)
T COG5495 162 GGEPFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQP 206 (289)
T ss_pred CCCceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCc
Confidence 999988744 556666667777777777889999999999998743
No 133
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00065 Score=60.82 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=71.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|.++..-|.+|.+||+...+- .....+.....+++++++.||+|.+.+|-... .+.++... .+.. +++|
T Consensus 153 IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~e-T~g~i~~~--~~a~--MK~g 226 (324)
T COG0111 153 IGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPE-TRGLINAE--ELAK--MKPG 226 (324)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcc-hhcccCHH--HHhh--CCCC
Confidence 48899999999999999999933322 12223566678999999999999999998776 77776532 3333 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 227 ailIN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 227 AILINAARGGVVDEDALLAALDS 249 (324)
T ss_pred eEEEECCCcceecHHHHHHHHHc
Confidence 89999986655555566666654
No 134
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.30 E-value=0.00082 Score=60.13 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=72.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|.++|+++..-|.+|..|||++. -+...+.+....+ ++|++++||+|.+.+|-..+ .+.++.. ..++. ++++
T Consensus 157 IG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~-T~hLin~--~~l~~--mk~g 229 (324)
T COG1052 157 IGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPE-TRHLINA--EELAK--MKPG 229 (324)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChH-HhhhcCH--HHHHh--CCCC
Confidence 589999999977789999999986 3333334466665 99999999999999998776 7777653 24443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-....+.+.+.+
T Consensus 230 a~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 230 AILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred eEEEECCCccccCHHHHHHHHHh
Confidence 89999986666556677777764
No 135
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.29 E-value=0.00069 Score=62.79 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=71.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|+.+..-|.+|.+||+++... ..+.....+++++++.||+|.+++|-... .+.++.. ..++. .+++
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~-T~~li~~--~~l~~--mk~g 232 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPS-TKNMIGA--EELAL--MKPG 232 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChH-HhhccCH--HHHhc--CCCC
Confidence 58899999999999999999874321 12344566899999999999999997766 6766643 24443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-....+.+.+.+
T Consensus 233 a~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 233 AILINASRGTVVDIDALADALKS 255 (409)
T ss_pred eEEEECCCCcccCHHHHHHHHHc
Confidence 99999997776666777777764
No 136
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.25 E-value=0.0012 Score=57.63 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=64.9
Q ss_pred CcHHHHHHHHhC--CCe-EEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKA--GYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..++..|.+. +++ +.+|||++++.+.+.+. +....+++++.+.++|+|++|.|.. . ..++... .++
T Consensus 12 iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~-~-~~~~~~~---al~--- 83 (265)
T PRK13304 12 IASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN-A-VEEVVPK---SLE--- 83 (265)
T ss_pred HHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH-H-HHHHHHH---HHH---
Confidence 688899998876 455 55789999998877653 5666789999888999999999854 3 5665532 332
Q ss_pred CCCCeEEEEeCC---CCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDSST---IDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~st---~~p~~~~~~~~~~~~ 103 (301)
.|+-++.+|+ .+++..+++.+..++
T Consensus 84 --~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~ 111 (265)
T PRK13304 84 --NGKDVIIMSVGALADKELFLKLYKLAKE 111 (265)
T ss_pred --cCCCEEEEchHHhcCHHHHHHHHHHHHH
Confidence 2334454554 366667777766654
No 137
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.24 E-value=0.00039 Score=55.06 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=59.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC--------------CHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--------------TPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--------------s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||.-+|..|.+.|++|+++.|++ ..+.+.+.|..... +..+.....|+||+|+...+ .++++.
T Consensus 9 iG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~--~~~~l~ 85 (151)
T PF02558_consen 9 IGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ--LEQALQ 85 (151)
T ss_dssp HHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG--HHHHHH
T ss_pred HHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc--hHHHHH
Confidence 68899999999999999999998 88888776643321 12245678999999999654 788887
Q ss_pred CCCccccCCCCCCCeEEEEeCCCCHH
Q 022170 67 GPNGLLQGGNSVRPQLLIDSSTIDPQ 92 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~st~~p~ 92 (301)
..++.+. +...+++-..+....
T Consensus 86 ~l~~~~~----~~t~iv~~qNG~g~~ 107 (151)
T PF02558_consen 86 SLKPYLD----PNTTIVSLQNGMGNE 107 (151)
T ss_dssp HHCTGEE----TTEEEEEESSSSSHH
T ss_pred HHhhccC----CCcEEEEEeCCCCcH
Confidence 6666653 223455555555544
No 138
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.06 E-value=0.002 Score=57.79 Aligned_cols=96 Identities=10% Similarity=0.104 Sum_probs=68.0
Q ss_pred CcHHHHHHHH-hCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
+|..+|+.+. .-|.+|..|||..... .....+.+. .++++++++||+|++++|-... .+.++.. ..++. +++
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~-~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~-T~~li~~--~~l~~--mk~ 228 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKE-AEERFNARY-CDLDTLLQESDFVCIILPLTDE-THHLFGA--EQFAK--MKS 228 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchh-hHHhcCcEe-cCHHHHHHhCCEEEEeCCCChH-HhhccCH--HHHhc--CCC
Confidence 5888999887 6788999999874321 222335544 4899999999999999997776 7776643 24443 467
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+.++|+++-...-.-..+.+.+.+
T Consensus 229 ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 229 SAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred CeEEEECCCccccCHHHHHHHHHc
Confidence 899999986555445566666654
No 139
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.97 E-value=0.0013 Score=58.80 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=55.9
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCCCC--CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~~~--~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..+++.|...| ++|+++||++++...+.+. |.... +++.+.+..+|+||.|+|.+. ..+++.. .+...
T Consensus 189 iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~--~~~~~~~---~~~~~- 262 (311)
T cd05213 189 MGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH--YAKIVER---AMKKR- 262 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc--hHHHHHH---HHhhC-
Confidence 6888899998765 7899999999988777654 54322 345677889999999999664 3233221 11110
Q ss_pred CCCCeEEEEeCC
Q 022170 77 SVRPQLLIDSST 88 (301)
Q Consensus 77 ~~~~~ivid~st 88 (301)
..++.++||.+.
T Consensus 263 ~~~~~~viDlav 274 (311)
T cd05213 263 SGKPRLIVDLAV 274 (311)
T ss_pred CCCCeEEEEeCC
Confidence 124679999984
No 140
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.95 E-value=0.00059 Score=53.16 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=45.7
Q ss_pred CcHHHHHHHHhCCCe-EEEEcCChhhHHHHHhCC------CCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMG------VPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~g------~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||++++..|.+.|.+ |+++||+.++++.+.+.- ....+++.+....+|+||.|+|.+.
T Consensus 23 ~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 23 AARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 578899999999986 999999999998887642 1234566677889999999999653
No 141
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.94 E-value=0.0036 Score=49.92 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=55.1
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchh-hhhcCCCccccCCCCCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL-DVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~-~v~~~~~~~l~~~~~~~~ 80 (301)
|.++|+.|...|-+|++++++|-+.-+..-.|... .++++++..+|++|.++..... +. +-+. . .+.+
T Consensus 35 G~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v-~~~~~a~~~adi~vtaTG~~~v-i~~e~~~-------~--mkdg 103 (162)
T PF00670_consen 35 GKGIARALRGLGARVTVTEIDPIRALQAAMDGFEV-MTLEEALRDADIFVTATGNKDV-ITGEHFR-------Q--MKDG 103 (162)
T ss_dssp HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EE-E-HHHHTTT-SEEEE-SSSSSS-B-HHHHH-------H--S-TT
T ss_pred cHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEe-cCHHHHHhhCCEEEECCCCccc-cCHHHHH-------H--hcCC
Confidence 88999999999999999999998877777778775 4789999999999999885432 22 2222 1 3467
Q ss_pred eEEEEeCCCCHH
Q 022170 81 QLLIDSSTIDPQ 92 (301)
Q Consensus 81 ~ivid~st~~p~ 92 (301)
.++.+.+....+
T Consensus 104 ail~n~Gh~d~E 115 (162)
T PF00670_consen 104 AILANAGHFDVE 115 (162)
T ss_dssp EEEEESSSSTTS
T ss_pred eEEeccCcCcee
Confidence 788887766544
No 142
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.86 E-value=0.0019 Score=58.10 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=49.7
Q ss_pred hCCCeEEEEcCChhhHHHHHh----CC--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEE
Q 022170 11 KAGYKMAVHDVNCNVMKMFSD----MG--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI 84 (301)
Q Consensus 11 ~~G~~V~~~dr~~~~~~~l~~----~g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivi 84 (301)
....+|.+|||++++.+.+.+ .| +..+.++++++++||+|++|+|+.. .++.. ..+ ++|..|.
T Consensus 151 ~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~----P~~~~--~~l-----~~g~~v~ 219 (325)
T TIGR02371 151 FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK----PVVKA--DWV-----SEGTHIN 219 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC----cEecH--HHc-----CCCCEEE
Confidence 445689999999999877754 25 3457899999999999999998543 23321 122 3566666
Q ss_pred EeCCCCHH
Q 022170 85 DSSTIDPQ 92 (301)
Q Consensus 85 d~st~~p~ 92 (301)
..++-.|.
T Consensus 220 ~vGs~~p~ 227 (325)
T TIGR02371 220 AIGADAPG 227 (325)
T ss_pred ecCCCCcc
Confidence 66666664
No 143
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.80 E-value=0.0035 Score=56.02 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=66.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|+.+..-|.+|.+|||+.... ..+.. ..+++++++.||+|++++|-... .+.++.. ..++. ++++
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~-T~~li~~--~~~~~--Mk~~ 225 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEK-TKNLIAY--KELKL--LKDG 225 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCch-hhcccCH--HHHHh--CCCC
Confidence 47889999988899999999964321 12333 35899999999999999997766 6666643 23443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 226 a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 226 AILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred eEEEECCCccccCHHHHHHHHHc
Confidence 99999986554444566666654
No 144
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.79 E-value=0.0048 Score=57.63 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=59.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchh-hhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL-DVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~-~v~~~~~~~l~~~~~~~ 79 (301)
+|..+|..|...|.+|+++++++.+.......|... .+++++++.+|+|++|+.+... +. +.+ .. ..+
T Consensus 265 IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~i-I~~e~~-------~~--MKp 333 (476)
T PTZ00075 265 VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDI-ITLEHM-------RR--MKN 333 (476)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccc-cCHHHH-------hc--cCC
Confidence 589999999999999999999988765555557654 4788999999999999764332 32 222 21 346
Q ss_pred CeEEEEeCCCCH
Q 022170 80 PQLLIDSSTIDP 91 (301)
Q Consensus 80 ~~ivid~st~~p 91 (301)
+.++++++-...
T Consensus 334 GAiLINvGr~d~ 345 (476)
T PTZ00075 334 NAIVGNIGHFDN 345 (476)
T ss_pred CcEEEEcCCCch
Confidence 789999877643
No 145
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.77 E-value=0.0026 Score=47.34 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHH---hCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKMFS---DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~---~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
..|+..|.+.|.+|.+||..-....... ..+++..+++.++++++|+|+++++.+. .+++-. +.+... ..+
T Consensus 20 ~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~--f~~l~~--~~~~~~--~~~ 93 (106)
T PF03720_consen 20 LELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE--FRELDW--EEIAKL--MRK 93 (106)
T ss_dssp HHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG--GGCCGH--HHHHHH--SCS
T ss_pred HHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH--HhccCH--HHHHHh--cCC
Confidence 4688899999999999997655544433 2467888899999999999999999765 454211 112211 125
Q ss_pred CeEEEEeCCC
Q 022170 80 PQLLIDSSTI 89 (301)
Q Consensus 80 ~~ivid~st~ 89 (301)
+++|+|+-++
T Consensus 94 ~~~iiD~~~~ 103 (106)
T PF03720_consen 94 PPVIIDGRNI 103 (106)
T ss_dssp SEEEEESSST
T ss_pred CCEEEECccc
Confidence 6899998765
No 146
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.65 E-value=0.0023 Score=48.74 Aligned_cols=80 Identities=19% Similarity=0.124 Sum_probs=46.3
Q ss_pred cHHHHHHHHhC-CCeEEEE-cCChhhHHHHHhCCCC-------CC--CCHHHHHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 2 GFRMASNLMKA-GYKMAVH-DVNCNVMKMFSDMGVP-------TK--ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 2 G~~lA~~L~~~-G~~V~~~-dr~~~~~~~l~~~g~~-------~~--~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
|..++..|.+. ++++... ++++++.+.+...+.. .. .+++ ..++|+||+|+|++.. .+++..
T Consensus 12 g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DvV~~~~~~~~~--~~~~~~--- 84 (122)
T smart00859 12 GQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE--ELAVDIVFLALPHGVS--KEIAPL--- 84 (122)
T ss_pred HHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChh--hcCCCEEEEcCCcHHH--HHHHHH---
Confidence 55677777774 7787654 6665444333332211 11 1222 2589999999997764 444322
Q ss_pred cccCCCCCCCeEEEEeCCCC
Q 022170 71 LLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~ 90 (301)
+... ..+|+++||+|+..
T Consensus 85 ~~~~--~~~g~~viD~s~~~ 102 (122)
T smart00859 85 LPKA--AEAGVKVIDLSSAF 102 (122)
T ss_pred HHhh--hcCCCEEEECCccc
Confidence 1111 24678999999864
No 147
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.63 E-value=0.0067 Score=55.43 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=62.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCcc---chhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH---QVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~---~~~~v~~~~~~~l~~~~~ 77 (301)
||+.+|+.|..-|.+|.+||+..... ... ....++++++++||+|++++|-... ....++. +..+.. .
T Consensus 127 IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~--~~~l~~--m 197 (378)
T PRK15438 127 VGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD--EKLIRS--L 197 (378)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccC--HHHHhc--C
Confidence 68999999999999999999753321 111 1346899999999999999994331 0222221 123433 4
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+++.++|+++-...-.-..+.+.+.+
T Consensus 198 k~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 198 KPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred CCCcEEEECCCchhcCHHHHHHHHHh
Confidence 57899999986655555566666653
No 148
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.61 E-value=0.0065 Score=54.41 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=65.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|+.|..-|.+|.+|||.... .... ..+++++++.||+|++++|-..+ .+.++.. ..++. ++++
T Consensus 159 IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~-T~~li~~--~~~~~--mk~g 226 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEH-TRHLIGA--RELAL--MKPG 226 (317)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChH-HhcCcCH--HHHhc--CCCC
Confidence 4889999999889999999986421 1122 34899999999999999997766 6666643 24443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 227 a~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 227 ALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred eEEEECCCccccCHHHHHHHHHc
Confidence 99999985544444566666654
No 149
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.59 E-value=0.0064 Score=54.36 Aligned_cols=92 Identities=15% Similarity=0.116 Sum_probs=65.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|+.+..-|.+|+.|++.... .. .. ...+++++++.||+|++++|-... .+.++.. ..++. +++|
T Consensus 158 IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~-T~~li~~--~~l~~--mk~g 226 (314)
T PRK06932 158 LGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTET-TQNLINA--ETLAL--MKPT 226 (314)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChH-HhcccCH--HHHHh--CCCC
Confidence 4788999998889999999986431 11 11 135899999999999999997665 6666643 24443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 227 a~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 227 AFLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred eEEEECCCccccCHHHHHHHHHc
Confidence 99999986544444566666654
No 150
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.58 E-value=0.0079 Score=56.99 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=58.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCC--CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~--~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+++..|.+.|++|+++||++++.+.+.+. +.... .++.+ +.++|+||.|+|.+.. +.. .+
T Consensus 343 iG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~-~~~-------~l----- 408 (477)
T PRK09310 343 AAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVT-IPK-------AF----- 408 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCc-chh-------HH-----
Confidence 58999999999999999999999988877653 21111 12222 4689999999997543 321 11
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
. .+++|+....+.|. +.+..+
T Consensus 409 -~-~~v~D~~Y~P~~T~--ll~~A~ 429 (477)
T PRK09310 409 -P-PCVVDINTLPKHSP--YTQYAR 429 (477)
T ss_pred -h-hhEEeccCCCCCCH--HHHHHH
Confidence 1 38999998877664 444444
No 151
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.57 E-value=0.0087 Score=55.50 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=59.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|..|...|.+|+++|+++.+.......|... .+++++++.+|+||.|+.+... +..- .+.. ..+|
T Consensus 223 IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~v-I~~~------~~~~--mK~G 292 (425)
T PRK05476 223 VGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDV-ITAE------HMEA--MKDG 292 (425)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHH-HHHH------HHhc--CCCC
Confidence 588999999999999999999998876666667664 4688999999999999875433 3211 1111 2456
Q ss_pred eEEEEeCCCCH
Q 022170 81 QLLIDSSTIDP 91 (301)
Q Consensus 81 ~ivid~st~~p 91 (301)
.++++.+....
T Consensus 293 ailiNvG~~d~ 303 (425)
T PRK05476 293 AILANIGHFDN 303 (425)
T ss_pred CEEEEcCCCCC
Confidence 78888876544
No 152
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=96.56 E-value=0.0051 Score=53.76 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchh
Q 022170 169 GAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKI---LNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 244 (301)
Q Consensus 169 a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (301)
|+.+||++|.+..+.+++++|+..+.++ .|.+++++.++ ++.+...|++.+.... .+. ..+.++.+-++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~---il~----~~d~~g~~lld 73 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITAD---ILR----KKDETGGPLLD 73 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHH---HHT-----B-TTSSBGGG
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHH---HHh----hccCccCcchh
Confidence 6889999999999999999999999995 68888766555 5566666776542211 100 01111111111
Q ss_pred hH------HHHHHHHHHHHHHcCCCchHHHHHH-HHHHHH
Q 022170 245 LM------AKDLNLALASAKEVGVDCPLTSQAQ-DIYAKL 277 (301)
Q Consensus 245 ~~------~kd~~~~~~~a~~~g~~~p~~~~~~-~~~~~a 277 (301)
.. .-.-+.....|-+.|+|.|++.++. ..+.+.
T Consensus 74 ~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~ 113 (291)
T PF00393_consen 74 KILDKAGQKGTGKWTVQEALELGVPAPTIAAAVFARFLSA 113 (291)
T ss_dssp GB-S----BSHHHHHHHHHHHHT---HHHHHHHHHHHHHH
T ss_pred hhCCccCCCCccchHHHHHHHhCCCccHHHHHHHHHHHhc
Confidence 11 1123467778888999999988765 344443
No 153
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.54 E-value=0.011 Score=53.85 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=65.7
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCC---C-------CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG---V-------PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g---~-------~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
+|+..|..|+++| ++|++-||++++.+++.... + .-...+.+++++.|+||.|+|.... ..++..
T Consensus 12 Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~--~~i~ka-- 87 (389)
T COG1748 12 VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD--LTILKA-- 87 (389)
T ss_pred hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh--HHHHHH--
Confidence 4889999999999 99999999999999887653 1 1223566788899999999996553 344421
Q ss_pred ccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 70 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.+ ..|.-++|+|...+.. .++.+...+
T Consensus 88 -~i-----~~gv~yvDts~~~~~~-~~~~~~a~~ 114 (389)
T COG1748 88 -CI-----KTGVDYVDTSYYEEPP-WKLDEEAKK 114 (389)
T ss_pred -HH-----HhCCCEEEcccCCchh-hhhhHHHHH
Confidence 22 2456788888776665 555555543
No 154
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.52 E-value=0.0083 Score=53.53 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=73.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|++|..-|..+.-+.|++...+...+.+.. ..+..+.+.++|+|++|+|.... .+.++.. ..++. +.++
T Consensus 173 IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~-T~~liNk--~~~~~--mk~g 246 (336)
T KOG0069|consen 173 IGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKE-TRHLINK--KFIEK--MKDG 246 (336)
T ss_pred HHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHH-HHHHhhH--HHHHh--cCCC
Confidence 58999999999884454557888777777766666 56889999999999999998887 8888764 35554 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-+.+.+.+.+
T Consensus 247 ~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 247 AVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred eEEEeccccccccHHHHHHHHhc
Confidence 89999876655555666666654
No 155
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.51 E-value=0.096 Score=45.12 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=74.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCC
Q 022170 33 GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 112 (301)
Q Consensus 33 g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~ 112 (301)
|++++++..|+++++|++++-+|.... ...++.. ++.+ .++|.+|.++.|++|-..-++-+.+.+. ..
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikk---i~~~--ipEgAII~~tCTIpt~~ly~~le~l~R~----Dv-- 195 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGM-QPDIIEK---FADD--IKEGAIVTHACTIPTTKFAKIFKDLGRD----DL-- 195 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCC-chHHHHH---HHhh--CCCCCEEeccccCCHHHHHHHHHHhCcc----cC--
Confidence 678889999999999999999998764 3444433 3433 3578899999999998766666655421 11
Q ss_pred CCCc-eEEecccCCCHHHhhccceEEEecC--CHHHHHHHHHHHHhcCCCeEee
Q 022170 113 WENP-VMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYC 163 (301)
Q Consensus 113 ~~~~-~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~~~~~~~~ 163 (301)
++ .|..+.|=+.+ |+.++ --| +++..+++.++.+..++..+.+
T Consensus 196 --gIsS~HPaaVPgt~-----Gq~~i-~egyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 196 --NVTSYHPGAVPEMK-----GQVYI-AEGYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred --CeeccCCCCCCCCC-----Cceec-ccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 12 23333343433 33222 223 7888899999999999887766
No 156
>PLN02494 adenosylhomocysteinase
Probab=96.46 E-value=0.013 Score=54.82 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=58.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccch-hhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQV-LDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~-~~v~~~~~~~l~~~~~~~ 79 (301)
+|..+|+.+...|.+|+++++++.+.......|.... ++++++..+|+|+.+..+... + .+.+. . ..+
T Consensus 265 IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~v-I~~e~L~-------~--MK~ 333 (477)
T PLN02494 265 VGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDI-IMVDHMR-------K--MKN 333 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccc-hHHHHHh-------c--CCC
Confidence 5889999999999999999999987666666676643 688899999999998775432 2 33332 1 345
Q ss_pred CeEEEEeCCCC
Q 022170 80 PQLLIDSSTID 90 (301)
Q Consensus 80 ~~ivid~st~~ 90 (301)
+.++++++-..
T Consensus 334 GAiLiNvGr~~ 344 (477)
T PLN02494 334 NAIVCNIGHFD 344 (477)
T ss_pred CCEEEEcCCCC
Confidence 67999987643
No 157
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.44 E-value=0.011 Score=54.50 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=58.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|+.+...|.+|+++++++.+.......|... .+++++++.+|+||.++.+... +..-. +.. .++|
T Consensus 206 IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v-~~leeal~~aDVVItaTG~~~v-I~~~~------~~~--mK~G 275 (406)
T TIGR00936 206 CGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKIGDIFITATGNKDV-IRGEH------FEN--MKDG 275 (406)
T ss_pred HHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEe-CCHHHHHhcCCEEEECCCCHHH-HHHHH------Hhc--CCCC
Confidence 488899999999999999999998876666667654 3678889999999999875443 33211 111 3466
Q ss_pred eEEEEeCCCCH
Q 022170 81 QLLIDSSTIDP 91 (301)
Q Consensus 81 ~ivid~st~~p 91 (301)
.++++.+-...
T Consensus 276 ailiN~G~~~~ 286 (406)
T TIGR00936 276 AIVANIGHFDV 286 (406)
T ss_pred cEEEEECCCCc
Confidence 78888876543
No 158
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.41 E-value=0.0096 Score=49.30 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=53.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCC--C--C---CCHHHHHhcCCEEEEecCCCccchhhhhcCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVP--T--K---ETPFEVAEASDVVITMLPSSSHQVLDVYNGP 68 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~--~--~---~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~ 68 (301)
+|..++..|++.|++|++++|++++.+.+.+. +.. . . +++.++++++|+||.+.|.+.. .....
T Consensus 40 iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~-~~~~~--- 115 (194)
T cd01078 40 VGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAGVE-LLEKL--- 115 (194)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCCce-echhh---
Confidence 47789999999999999999999988776542 111 1 1 2234677899999999986542 11111
Q ss_pred CccccCCCCCCCeEEEEeCCCCH
Q 022170 69 NGLLQGGNSVRPQLLIDSSTIDP 91 (301)
Q Consensus 69 ~~~l~~~~~~~~~ivid~st~~p 91 (301)
... ..++.+++|..-..+
T Consensus 116 ~~~-----~~~~~vv~D~~~~~~ 133 (194)
T cd01078 116 AWA-----PKPLAVAADVNAVPP 133 (194)
T ss_pred hcc-----cCceeEEEEccCCCC
Confidence 001 123578999865443
No 159
>PLN02306 hydroxypyruvate reductase
Probab=96.40 E-value=0.013 Score=53.75 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=65.4
Q ss_pred CcHHHHHHHH-hCCCeEEEEcCChhh-HHHH-HhCC------------CCCCCCHHHHHhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLM-KAGYKMAVHDVNCNV-MKMF-SDMG------------VPTKETPFEVAEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~~~dr~~~~-~~~l-~~~g------------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~ 65 (301)
+|+.+|+.|. .-|.+|.+||+++.. .+.. ...| .....+++++++.||+|++++|-... .+.++
T Consensus 176 IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~-T~~li 254 (386)
T PLN02306 176 IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKT-TYHLI 254 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChh-hhhhc
Confidence 4788999885 668999999987642 1111 1111 12246899999999999999997665 66666
Q ss_pred cCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 66 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 66 ~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.. ..++. ++++.++|+++-...-.-..+.+.+.+
T Consensus 255 n~--~~l~~--MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 255 NK--ERLAL--MKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred CH--HHHHh--CCCCeEEEECCCccccCHHHHHHHHHh
Confidence 43 24443 467899999985444344455565543
No 160
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.34 E-value=0.12 Score=44.59 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=75.1
Q ss_pred CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCC
Q 022170 33 GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 112 (301)
Q Consensus 33 g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~ 112 (301)
|++++++..|+++++|++|+-+|.... ...++.. ++.+ .++|.+|.++.|++|-..-++-+.+.+. ..
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikk---ii~~--lpEgAII~~tCTIpt~~ly~ilE~l~R~----Dv-- 193 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKK---FIDD--IPEGAIVTHACTIPTTKFAKIFEDLGRE----DL-- 193 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHH---HHhh--CCCCCEEeccccCChHHHHHHHHhhCcc----cC--
Confidence 688889999999999999999998764 3444433 3433 3578899999999998666666655421 11
Q ss_pred CCCc-eEEecccCCCHHHhhccceEEEecC--CHHHHHHHHHHHHhcCCCeEee
Q 022170 113 WENP-VMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYC 163 (301)
Q Consensus 113 ~~~~-~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~~~~~~~~ 163 (301)
++ .|..+.|=+.+ ++.++ +-| +++..+++.++.+..++..+.+
T Consensus 194 --gVsS~HPaaVPgt~-----~q~Yi-~egyAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 194 --NVTSYHPGCVPEMK-----GQVYI-AEGYASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred --CeeccCCCCCCCCC-----CceEe-ecccCCHHHHHHHHHHHHHhCCCeeec
Confidence 12 23333333333 33233 344 7888899999999999887766
No 161
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=96.30 E-value=0.043 Score=42.48 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=48.5
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022170 136 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG---AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 207 (301)
Q Consensus 136 ~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a---~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~ 207 (301)
++.+.||++..+.++++++.+|.+++.+.+.... .+.-+++|+.. ..+..+..++++.|++.++..++
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~----~L~~~a~~ll~~~gi~~~~a~~~ 73 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLV----ALYALAAELLEQAGIDFEEALEA 73 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTT-SHHH--HH
T ss_pred EEEEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHH----HHHHHHHHHHHHcCCCchhHHHH
Confidence 5677789999999999999999999999654333 34556777777 55577889999999999553333
No 162
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.25 E-value=0.019 Score=51.09 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=54.5
Q ss_pred CcHHHHHHHHh-CC-CeEEEEcCChhhHHHHHhC----CCCC-CCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM----GVPT-KETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~-~G-~~V~~~dr~~~~~~~l~~~----g~~~-~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
||...+..+.. .+ .+|.+|+|++++.+.+.+. +... +.+.++++.++|+|+.|+|.+. .++.. .+
T Consensus 136 qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~----Pl~~~---~~- 207 (304)
T PRK07340 136 QARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT----PVYPE---AA- 207 (304)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC----ceeCc---cC-
Confidence 35566666653 45 4699999999998877654 2232 4688899999999999999543 33321 12
Q ss_pred CCCCCCCeEEEEeCCCCHH
Q 022170 74 GGNSVRPQLLIDSSTIDPQ 92 (301)
Q Consensus 74 ~~~~~~~~ivid~st~~p~ 92 (301)
.+|..|+..++..|.
T Consensus 208 ----~~g~hi~~iGs~~p~ 222 (304)
T PRK07340 208 ----RAGRLVVAVGAFTPD 222 (304)
T ss_pred ----CCCCEEEecCCCCCC
Confidence 356677766766664
No 163
>PLN00203 glutamyl-tRNA reductase
Probab=96.24 E-value=0.0069 Score=57.71 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=46.4
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC--CCC----CCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--GVP----TKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--g~~----~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||..++.+|...|+ +|++++|++++.+.+.+. +.. ..+++.+++.++|+||.|+|.+
T Consensus 277 mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 277 MGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 78999999999996 699999999999888764 221 2346778889999999998754
No 164
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.15 E-value=0.02 Score=46.34 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=45.0
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|..+|..|.+.|.+|++.+|+. .++.+.+.++|+||.|++.+. ++.. ..+ .++.
T Consensus 57 G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~-----ii~~--~~~-----~~~~ 110 (168)
T cd01080 57 GKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG-----LVKG--DMV-----KPGA 110 (168)
T ss_pred HHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc-----eecH--HHc-----cCCe
Confidence 6779999999998999999873 356778899999999999543 2221 122 2457
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 111 viIDla~ 117 (168)
T cd01080 111 VVIDVGI 117 (168)
T ss_pred EEEEccC
Confidence 8999874
No 165
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.13 E-value=0.034 Score=41.90 Aligned_cols=93 Identities=20% Similarity=0.330 Sum_probs=64.3
Q ss_pred cHHHHHHHHhC--CCeEE-EEcCChhhHHHHH-hCCCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 2 GFRMASNLMKA--GYKMA-VHDVNCNVMKMFS-DMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 2 G~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~-~~g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
|......+.+. +++|. ++|+++++.+.+. +.|....+|.+++++ +.|+|++|+|+... ..-+.. .++.
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h-~~~~~~----~l~~- 85 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSH-AEIAKK----ALEA- 85 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGH-HHHHHH----HHHT-
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcch-HHHHHH----HHHc-
Confidence 44555566655 45654 7899999988764 458888899999987 79999999997654 332221 2321
Q ss_pred CCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 76 NSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 76 ~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
+..++++- -+.++++.+++.+...+
T Consensus 86 ---g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 86 ---GKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp ---TSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred ---CCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 22466664 25688889999888765
No 166
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.11 E-value=0.0069 Score=56.39 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=45.9
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCC--CCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVP--TKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~--~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||..++..|...| ++|++|+|++++.+.+.+. |.. ...++.+.+.++|+||.|++.+.
T Consensus 191 iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 191 MGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 6888999999999 7899999999988766653 332 22466778889999999998654
No 167
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.09 E-value=0.0089 Score=53.46 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=41.7
Q ss_pred CeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeC
Q 022170 14 YKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS 87 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s 87 (301)
.+|.+|+|++++++++.+. + +..++|+++++++||+|++|+|.... ..++.. ..+ .+|..|+..+
T Consensus 154 ~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~--~P~~~~--~~l-----~~g~hi~~iG 224 (313)
T PF02423_consen 154 KEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP--APVFDA--EWL-----KPGTHINAIG 224 (313)
T ss_dssp SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE--EESB-G--GGS------TT-EEEE-S
T ss_pred eEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC--CccccH--HHc-----CCCcEEEEec
Confidence 4799999999988777553 3 34578999999999999999995441 134432 123 3566666666
Q ss_pred CCCHH
Q 022170 88 TIDPQ 92 (301)
Q Consensus 88 t~~p~ 92 (301)
+-.|.
T Consensus 225 s~~~~ 229 (313)
T PF02423_consen 225 SYTPG 229 (313)
T ss_dssp -SSTT
T ss_pred CCCCc
Confidence 66564
No 168
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.09 E-value=0.022 Score=52.70 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=58.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..++..+...|.+|+++|+++.+.+.....|+... ++++++..+|+||.|+.+... +..-. +.. ..++
T Consensus 213 IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~-i~~~~------l~~--mk~G 282 (413)
T cd00401 213 VGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDI-ITGEH------FEQ--MKDG 282 (413)
T ss_pred HHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHH-HHHHH------Hhc--CCCC
Confidence 5888999999999999999999999888888887543 567888899999999875543 33321 111 2355
Q ss_pred eEEEEeCCC
Q 022170 81 QLLIDSSTI 89 (301)
Q Consensus 81 ~ivid~st~ 89 (301)
.++++.+..
T Consensus 283 gilvnvG~~ 291 (413)
T cd00401 283 AIVCNIGHF 291 (413)
T ss_pred cEEEEeCCC
Confidence 688887743
No 169
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.06 E-value=0.011 Score=54.15 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=53.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC---C---CCHHHHHhcCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT---K---ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~---~---~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
+|...++.+.+.|.+|+++||++++.+.+... +... . .++.+.+.++|+||.|++.+......++. +..+.
T Consensus 178 vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit--~~~l~ 255 (370)
T TIGR00518 178 VGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVS--NSLVA 255 (370)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcC--HHHHh
Confidence 47888999999999999999999988777654 2211 1 24566778999999998542210111111 11222
Q ss_pred CCCCCCCeEEEEeCC
Q 022170 74 GGNSVRPQLLIDSST 88 (301)
Q Consensus 74 ~~~~~~~~ivid~st 88 (301)
. ..++.++||.+.
T Consensus 256 ~--mk~g~vIvDva~ 268 (370)
T TIGR00518 256 Q--MKPGAVIVDVAI 268 (370)
T ss_pred c--CCCCCEEEEEec
Confidence 2 235679999873
No 170
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.05 E-value=0.0089 Score=53.46 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=47.4
Q ss_pred CeEEEEcCChhhHHHHHhC----CCC--CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeC
Q 022170 14 YKMAVHDVNCNVMKMFSDM----GVP--TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS 87 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~----g~~--~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s 87 (301)
.+|.+|||++++.+++.+. +.. .+++.++++++||+|++|++... .++.. ..+ .+|..|+..+
T Consensus 154 ~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~----P~~~~--~~l-----~~G~hi~~iG 222 (315)
T PRK06823 154 RQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE----PLLQA--EDI-----QPGTHITAVG 222 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC----ceeCH--HHc-----CCCcEEEecC
Confidence 5799999999998876542 333 36899999999999999998533 33321 122 3566666666
Q ss_pred CCCHH
Q 022170 88 TIDPQ 92 (301)
Q Consensus 88 t~~p~ 92 (301)
+..|.
T Consensus 223 s~~p~ 227 (315)
T PRK06823 223 ADSPG 227 (315)
T ss_pred CCCcc
Confidence 66664
No 171
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.99 E-value=0.072 Score=52.83 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=84.4
Q ss_pred EEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHH
Q 022170 50 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL 128 (301)
Q Consensus 50 Vi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~ 128 (301)
||+|+|- .. +.+++......+ .++.+|.|.+++...-.+.+.+.+.. . ...|+. .|+.|++.
T Consensus 1 vila~Pv-~~-~~~~~~~~~~~~-----~~~~~vtDv~SvK~~i~~~~~~~l~~-----~-----~~~fvg~HPMaG~e~ 63 (673)
T PRK11861 1 VLLAAPV-AQ-TGPLLARIAPFL-----DASTIVTDAGSTKSDVVAAARAALGA-----R-----IGQFVPGHPIAGRES 63 (673)
T ss_pred CEEEcCH-HH-HHHHHHHHhhhC-----CCCcEEEecCcccHHHHHHHHHhccc-----c-----CCeEEecCCcCcCcc
Confidence 6899994 44 777876654443 35689999999998777766655431 0 134654 68888765
Q ss_pred Hh--------hccceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHH
Q 022170 129 AA--------EAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGV 187 (301)
Q Consensus 129 ~a--------~~g~l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~ 187 (301)
.- .+|..++++-. +++.++.++.+++.+|.+++.+.+...-..+-+++.+-..+..++.
T Consensus 64 ~G~~~a~~~Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~ 133 (673)
T PRK11861 64 SGVDAALADLYVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALV 133 (673)
T ss_pred hhhhhhChhHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 43 25666777733 6778999999999999999999877777777777666665544443
No 172
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=95.98 E-value=0.042 Score=51.67 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcC--CCeEeeCCcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHh
Q 022170 143 EDAYQAAKPLFLSMG--KNTIYCGGAGN-----GAAAKICNNLTMAVSMLGVSEALTLGQS----L--GISASTLTKILN 209 (301)
Q Consensus 143 ~~~~~~~~~ll~~~~--~~~~~~g~~g~-----a~~~k~~~N~~~~~~~~~~~E~~~l~~~----~--G~~~~~~~~~~~ 209 (301)
+.++.++.+.++... ....+.|+.+. ++.+|.+.|.+.+..+...+|++.+.++ + ++|..++.++++
T Consensus 271 ~AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 350 (459)
T PRK09287 271 EAVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWR 350 (459)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 345555555555432 12233455443 7899999999999999999999999988 4 578999999999
Q ss_pred hcC-CCccccccCC----CCCCcccCCCCCCCCCCCc--chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCC
Q 022170 210 SSS-ARCWSSDSYN----PVPGVMEGVPASRNYGGGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 282 (301)
Q Consensus 210 ~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 282 (301)
.|+ .+++++.... .-|++. ..+ +++.| .+......++.++..+-+.|+|+|.+.+++..|+.-...-.
T Consensus 351 ~GcIIRs~lL~~i~~a~~~~~~l~-nl~----~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~ 425 (459)
T PRK09287 351 GGCIIRAQFLQKITDAYEANPDLA-NLL----LDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARL 425 (459)
T ss_pred CCCEEeHHHHHHHHHHHHhCCCch-hhc----CCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Confidence 886 4555543211 101100 000 11112 12334455678999999999999999999977766554433
Q ss_pred C
Q 022170 283 D 283 (301)
Q Consensus 283 g 283 (301)
+
T Consensus 426 ~ 426 (459)
T PRK09287 426 P 426 (459)
T ss_pred c
Confidence 3
No 173
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.87 E-value=0.02 Score=49.93 Aligned_cols=68 Identities=26% Similarity=0.283 Sum_probs=52.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhc-CCCccc
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN-GPNGLL 72 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~-~~~~~l 72 (301)
|.+-|.||..+|.+|++--|.-.+ .+...+.|..+ .+.+|+++.+|+|++-+||.. -.+|+. .+.+.+
T Consensus 30 G~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe~--q~~vy~~~I~p~L 99 (338)
T COG0059 30 GHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPDEQ--QKEVYEKEIAPNL 99 (338)
T ss_pred HHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCchhh--HHHHHHHHhhhhh
Confidence 678899999999998876654444 66777778775 689999999999999999755 577776 334444
No 174
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.86 E-value=0.013 Score=52.13 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=46.7
Q ss_pred CeEEEEcCChhhHHHHHhC-----C--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEe
Q 022170 14 YKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS 86 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~ 86 (301)
.+|.+|+|++++.+++.+. | +.+++++++++.+||+|++|++... .++.. ..+ .+|..|.-.
T Consensus 143 ~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~----P~~~~--~~l-----~pg~hV~ai 211 (301)
T PRK06407 143 KRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT----PIFNR--KYL-----GDEYHVNLA 211 (301)
T ss_pred CEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC----cEecH--HHc-----CCCceEEec
Confidence 4799999999998877543 4 3456899999999999999999543 33321 123 245555555
Q ss_pred CCCCHH
Q 022170 87 STIDPQ 92 (301)
Q Consensus 87 st~~p~ 92 (301)
.+..|.
T Consensus 212 Gs~~p~ 217 (301)
T PRK06407 212 GSNYPN 217 (301)
T ss_pred CCCCCC
Confidence 555554
No 175
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.85 E-value=0.054 Score=43.35 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=26.2
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCH
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 91 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p 91 (301)
.++++.+++||+||++++.+.- ++. ..+ .+|.++||++....
T Consensus 71 ~~l~~~~~~ADIVVsa~G~~~~-i~~------~~i-----k~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGKPNL-IKA------DWI-----KPGAVVIDVGINYV 112 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSSTT--B-G------GGS------TTEEEEE--CEEE
T ss_pred CcccceeeeccEEeeeeccccc-ccc------ccc-----cCCcEEEecCCccc
Confidence 5678889999999999995542 322 123 36789999986443
No 176
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.82 E-value=0.06 Score=50.84 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CCccccccCCCCCCcccCCC-CCC-CCCC
Q 022170 169 GAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP-ASR-NYGG 239 (301)
Q Consensus 169 a~~~k~~~N~~~~~~~~~~~E~~~l~~~------~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 239 (301)
++.+|.+.|.+....+...+|++.+.++ .++|..++.++++.|+ .+++++..... .+...+ +.. -+++
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~---a~~~~~~l~~l~~~~ 388 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITK---AFAENPDLANLLLAP 388 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHH---HHHcCCChhhhcCCH
Confidence 7899999999999999999999999987 7899999999999886 45555432110 000000 000 0011
Q ss_pred Cc--chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 240 GF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 240 ~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
.| .+......++.++..+-+.|+|+|.+.+++..|++....-
T Consensus 389 ~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~ 432 (467)
T TIGR00873 389 YFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTAR 432 (467)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 12 1334455668899999999999999999998888776543
No 177
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.77 E-value=0.021 Score=51.42 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=42.5
Q ss_pred cHHHHHHHH-hCC-CeEEEEcCChhhHHHHHhC-----CCCC--CCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLM-KAG-YKMAVHDVNCNVMKMFSDM-----GVPT--KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~-~~G-~~V~~~dr~~~~~~~l~~~-----g~~~--~~s~~e~~~~adiVi~~vp~~ 57 (301)
|...+..|. ..+ -+|++|+|++++.+.+.+. |..+ .+++++++.++|+|+.|+|..
T Consensus 141 A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 141 ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC
Confidence 455666775 355 3699999999998887653 4433 578899999999999999853
No 178
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.75 E-value=0.05 Score=42.53 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=45.7
Q ss_pred CCCeEEEEcCChhhHHHHH----hCCCCC--CC----CHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 12 AGYKMAVHDVNCNVMKMFS----DMGVPT--KE----TPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 12 ~G~~V~~~dr~~~~~~~l~----~~g~~~--~~----s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
.|.+|.+|+|+...-+.+. +.|+++ +. ++++.+++||+|+.+++.+.- ++. ..+ .+|.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~-i~~------~~i-----kpGa 94 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEK-VPT------EWI-----KPGA 94 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCc-cCH------HHc-----CCCC
Confidence 3567999999988765543 345432 33 788999999999999996532 221 233 3678
Q ss_pred EEEEeCCCC
Q 022170 82 LLIDSSTID 90 (301)
Q Consensus 82 ivid~st~~ 90 (301)
+++|.+...
T Consensus 95 ~Vidvg~~~ 103 (140)
T cd05212 95 TVINCSPTK 103 (140)
T ss_pred EEEEcCCCc
Confidence 899877544
No 179
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.69 E-value=0.038 Score=48.45 Aligned_cols=62 Identities=11% Similarity=0.222 Sum_probs=45.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|.++|..|.+.|..|+++++.. .++.+.+++||+||.+++.+.- +.. ..+ .+|
T Consensus 170 VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~-i~~------~~v-----k~g 223 (286)
T PRK14175 170 VGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGL-VTK------DVV-----KEG 223 (286)
T ss_pred hHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcc-cCH------HHc-----CCC
Confidence 58888888888888888887532 3677889999999999996532 222 122 356
Q ss_pred eEEEEeCC
Q 022170 81 QLLIDSST 88 (301)
Q Consensus 81 ~ivid~st 88 (301)
.++||.+.
T Consensus 224 avVIDvGi 231 (286)
T PRK14175 224 AVIIDVGN 231 (286)
T ss_pred cEEEEcCC
Confidence 89999875
No 180
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.65 E-value=0.014 Score=54.55 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=45.9
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCC--CCCHHHHHhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPT--KETPFEVAEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~--~~s~~e~~~~adiVi~~vp~~~~ 59 (301)
||..++..|...|+ +|++++|++++...+.+. |... ..++.+.+.++|+||.|+|.+..
T Consensus 193 iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 193 MGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHP 255 (423)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCc
Confidence 68889999999997 799999999998777654 4332 23556777899999999986643
No 181
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.61 E-value=0.055 Score=46.96 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=60.8
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||..++..+.+. ++++. ++|+++++.......++...++++++++++|+|+.+.|... ..+++.. .++ .
T Consensus 13 mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~--~~~~~~~---al~----~ 83 (257)
T PRK00048 13 MGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEA--TLENLEF---ALE----H 83 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHH--HHHHHHH---HHH----c
Confidence 788888888764 67765 58998876654433466677899998888999998887333 4444422 232 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHH
Q 022170 79 RPQLLIDSSTIDPQTSRNISA 99 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~ 99 (301)
+..+++-+++.+++...++.+
T Consensus 84 G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 84 GKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred CCCEEEECCCCCHHHHHHHHH
Confidence 234666666678887777766
No 182
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.60 E-value=0.034 Score=50.30 Aligned_cols=71 Identities=10% Similarity=0.113 Sum_probs=46.9
Q ss_pred CCeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEe
Q 022170 13 GYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS 86 (301)
Q Consensus 13 G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~ 86 (301)
-.+|++|+|++++.+++.+. + +..++++++++++||+|++|+|... -..++.. ..+ .+|..|.-.
T Consensus 154 i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~--~~Pvl~~--~~l-----kpG~hV~aI 224 (346)
T PRK07589 154 IEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT--NATILTD--DMV-----EPGMHINAV 224 (346)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC--CCceecH--HHc-----CCCcEEEec
Confidence 35799999999998776542 3 3446899999999999999998432 1233322 122 345555555
Q ss_pred CCCCHH
Q 022170 87 STIDPQ 92 (301)
Q Consensus 87 st~~p~ 92 (301)
++..|.
T Consensus 225 Gs~~p~ 230 (346)
T PRK07589 225 GGDCPG 230 (346)
T ss_pred CCCCCC
Confidence 555554
No 183
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.59 E-value=0.019 Score=53.27 Aligned_cols=58 Identities=5% Similarity=0.060 Sum_probs=46.7
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-C-CC--CCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G-VP--TKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g-~~--~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||..++.+|...|. ++++++|++++.+.+.+. + .. ..+++.+.+.++|+||.|++.+.
T Consensus 192 ~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 192 TGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 68899999999995 799999999999888764 2 22 23455677889999999999664
No 184
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.55 E-value=0.057 Score=47.31 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=41.6
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.+.|..|++++.. +.++.+.+++||+||++++.+.- +.. ..+ .+|.
T Consensus 171 GkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~-i~~------~~i-----k~ga 224 (285)
T PRK14189 171 GKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNV-LTA------DMV-----KPGA 224 (285)
T ss_pred HHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCc-cCH------HHc-----CCCC
Confidence 666666666666666665421 34678889999999999996542 322 233 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||+++
T Consensus 225 vVIDVGi 231 (285)
T PRK14189 225 TVIDVGM 231 (285)
T ss_pred EEEEccc
Confidence 9999885
No 185
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.53 E-value=0.026 Score=50.91 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=42.1
Q ss_pred cHHHHHHHHh-CC-CeEEEEcCChhhHHHHHhC-----CCC--CCCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~-~G-~~V~~~dr~~~~~~~l~~~-----g~~--~~~s~~e~~~~adiVi~~vp~~ 57 (301)
|...+..|.. .+ .+|.+|+|++++.+.+.+. |+. ..+++++++.++|+|+.|+|..
T Consensus 144 a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 144 ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 4555566654 34 5799999999999888652 443 3578899999999999999854
No 186
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.50 E-value=0.023 Score=52.32 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=46.8
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCCC--CCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVPT--KETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~~--~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||.-.|++|.++| .+|++.||+.+++..+++. |+.+ .+.+.+.+..+|+||+|+..+.
T Consensus 189 m~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 189 MGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence 7888999999999 6799999999999988765 5333 3456667889999999987543
No 187
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.48 E-value=0.023 Score=48.27 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=47.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh--CCC-------CCCCCHHHH-HhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--MGV-------PTKETPFEV-AEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~--~g~-------~~~~s~~e~-~~~adiVi~~vp~~~~~~~~v~ 65 (301)
+|..+|+.|.+.||+|.+.|++++++++... ... .-...+.++ +.++|+++.++.++. ...++
T Consensus 11 vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~--~N~i~ 83 (225)
T COG0569 11 VGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE--VNSVL 83 (225)
T ss_pred HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH--HHHHH
Confidence 5899999999999999999999999988544 321 112244555 578999999999765 34444
No 188
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=95.44 E-value=0.031 Score=50.06 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=37.8
Q ss_pred CeEEEEcCChhhHHHHHhC----C---CCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 14 YKMAVHDVNCNVMKMFSDM----G---VPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~----g---~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
-+|.+|+|+++..+++... + +..++|.++++++||+|+.|+|+..
T Consensus 156 ~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~ 207 (330)
T COG2423 156 REIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE 207 (330)
T ss_pred cEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC
Confidence 4799999999999887643 3 4678899999999999999999643
No 189
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.32 E-value=0.025 Score=54.86 Aligned_cols=59 Identities=12% Similarity=0.247 Sum_probs=46.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCC---HHHH-HhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KET---PFEV-AEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~----~~s---~~e~-~~~adiVi~~vp~~~~ 59 (301)
+|+.+|+.|.++||+|+++|.|+++++.+.+.|... .++ ++++ ++++|.++++++++..
T Consensus 428 ~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 428 VGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHH
Confidence 488999999999999999999999999998876432 112 2222 4689999999998754
No 190
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.25 E-value=0.03 Score=54.70 Aligned_cols=64 Identities=11% Similarity=0.224 Sum_probs=49.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CC---HHHH-HhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ET---PFEV-AEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s---~~e~-~~~adiVi~~vp~~~~~~~~v~ 65 (301)
+|..+++.|.++|+++++.|.|+++++.+.+.|..+. ++ ++++ ++++|.++++++++.. ...++
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~-n~~i~ 482 (601)
T PRK03659 411 FGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPED-TMKIV 482 (601)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHH-HHHHH
Confidence 4788999999999999999999999999988774321 12 2222 4689999999998765 44444
No 191
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.25 E-value=0.063 Score=48.30 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=53.5
Q ss_pred cHHHHHHHHh-CC-CeEEEEcCChhhHHHHHhC-----CC--CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 2 GFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GV--PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 2 G~~lA~~L~~-~G-~~V~~~dr~~~~~~~l~~~-----g~--~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
|...+..+.. .+ .+|.+|||++++.+++.+. ++ ....++++++.++|+|++|+|... .++. ..+
T Consensus 139 a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~----p~i~---~~l 211 (325)
T PRK08618 139 AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT----PVFS---EKL 211 (325)
T ss_pred HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC----cchH---Hhc
Confidence 3445555543 34 4799999999998877652 43 346788999999999999999643 2322 122
Q ss_pred cCCCCCCCeEEEEeCCCCHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQT 93 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~ 93 (301)
.+|+.|+...+-.|..
T Consensus 212 -----~~G~hV~~iGs~~p~~ 227 (325)
T PRK08618 212 -----KKGVHINAVGSFMPDM 227 (325)
T ss_pred -----CCCcEEEecCCCCccc
Confidence 3566777777666653
No 192
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=95.25 E-value=0.29 Score=43.74 Aligned_cols=76 Identities=12% Similarity=0.151 Sum_probs=49.5
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCCh-hhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNC-NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~-~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||..++..+.++ ++++. +|+|++ ++.. ...+.....+..+...+.|+|++|+|+... ...+.. ++.
T Consensus 14 IGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th-~~~~~~----~L~---- 82 (324)
T TIGR01921 14 LGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATD-IPEQAP----YFA---- 82 (324)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccC-HHHHHH----HHH----
Confidence 578888888765 67876 579985 4433 122444445677777889999999997665 444332 332
Q ss_pred CCCeEEEEeCC
Q 022170 78 VRPQLLIDSST 88 (301)
Q Consensus 78 ~~~~ivid~st 88 (301)
.|..+|++.-
T Consensus 83 -aG~NVV~s~~ 92 (324)
T TIGR01921 83 -QFANTVDSFD 92 (324)
T ss_pred -cCCCEEECCC
Confidence 4567777653
No 193
>PRK04148 hypothetical protein; Provisional
Probab=95.19 E-value=0.092 Score=40.60 Aligned_cols=57 Identities=18% Similarity=0.410 Sum_probs=45.0
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-----CCCHHHHHhcCCEEEEecCCCc
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-----KETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----~~s~~e~~~~adiVi~~vp~~~ 58 (301)
|..+|..|.+.||+|++.|.|++.++.+.+.+..+ +...-+.-+++|+|..+-|.+.
T Consensus 28 G~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 28 YFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred CHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 45689999999999999999999998888776432 2333456788999999998554
No 194
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.18 E-value=0.03 Score=49.17 Aligned_cols=57 Identities=9% Similarity=0.069 Sum_probs=43.2
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCC-----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG-----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g-----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.+++..|...| .+|++++|++++.+.+.+.- +....+..+.+..+|+||-|+|..
T Consensus 134 ~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 134 AARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 4788999999999 78999999999988776541 111113345667899999999955
No 195
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.15 E-value=0.03 Score=45.52 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=43.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|..+++.|.+.||+|++..|++++.+. ..+++ -.++..++++++|+||.+++.+
T Consensus 10 vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 10 VGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred HHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 4889999999999999999999998877 33322 1234567788999999999853
No 196
>PRK06046 alanine dehydrogenase; Validated
Probab=95.03 E-value=0.054 Score=48.74 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=52.1
Q ss_pred CcHHHHHHHHhC-C-CeEEEEcCChhhHHHHHhC-----C--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~-G-~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||...+..|... + ..|.+|||++++.+++.+. + +..+++.+++++ +|+|++|+|+.. .++.. ..
T Consensus 140 qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~----P~~~~--~~ 212 (326)
T PRK06046 140 QARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK----PVVKA--EW 212 (326)
T ss_pred HHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC----cEecH--HH
Confidence 355566666532 3 3688999999998877653 3 234678899887 999999999543 33321 12
Q ss_pred ccCCCCCCCeEEEEeCCCCHH
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQ 92 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~ 92 (301)
+ .+|+.|...++..|.
T Consensus 213 l-----~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 213 I-----KEGTHINAIGADAPG 228 (326)
T ss_pred c-----CCCCEEEecCCCCCc
Confidence 2 356666666666654
No 197
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.03 E-value=0.08 Score=47.17 Aligned_cols=55 Identities=20% Similarity=0.156 Sum_probs=39.1
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHh----C----C----CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD----M----G----VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~----~----g----~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.++|..++..|+ +|.++|+++++.+.... . + ++.+++. +.+++||+||+++..
T Consensus 13 vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~ 80 (307)
T PRK06223 13 VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV 80 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence 68999999999876 99999998876543211 1 1 1123445 567999999999743
No 198
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.03 E-value=0.044 Score=48.80 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=41.5
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHH----HhC--------CCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMF----SDM--------GVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l----~~~--------g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||..+|..|+.+|+ +|.++|++++..+.. .+. .++.+.+.++ +++||+||++++.+.
T Consensus 12 vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p~ 81 (305)
T TIGR01763 12 VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLPR 81 (305)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCCC
Confidence 79999999999887 899999977654311 111 1334467766 789999999999643
No 199
>PRK06199 ornithine cyclodeaminase; Validated
Probab=94.98 E-value=0.027 Score=51.70 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=35.5
Q ss_pred CeEEEEcCChhhHHHHHhC------C---CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 14 YKMAVHDVNCNVMKMFSDM------G---VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~------g---~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
-+|.+|+|++++++++.+. | +.+++++++++++||+|++|++..
T Consensus 182 ~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 182 DTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred cEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 3799999999998776542 2 345789999999999999999753
No 200
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.95 E-value=0.12 Score=45.39 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=41.7
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.+.|..|+++++. +.++.+.+++||+||.+++-+.- +.. ..+ .+|.
T Consensus 172 G~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~-v~~------~~v-----k~ga 225 (285)
T PRK10792 172 GRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGF-IPG------EWI-----KPGA 225 (285)
T ss_pred HHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCccc-ccH------HHc-----CCCc
Confidence 666666666666666666532 34688889999999999975443 332 122 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 226 vVIDvGi 232 (285)
T PRK10792 226 IVIDVGI 232 (285)
T ss_pred EEEEccc
Confidence 9999875
No 201
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.89 E-value=0.042 Score=48.46 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=43.0
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-----C-CC--CCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----G-VP--TKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-----g-~~--~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|++++..|.+.|. +|+++||++++++.+.+. . .. ...++.+.+.++|+||-|+|-.
T Consensus 138 aaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 138 AGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 36789999999997 799999999999888653 1 11 1234455677899999999854
No 202
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=94.82 E-value=0.027 Score=52.55 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=37.5
Q ss_pred HhCCCeEEEEcCChhhHHHHHhC------------CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 10 MKAGYKMAVHDVNCNVMKMFSDM------------GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 10 ~~~G~~V~~~dr~~~~~~~l~~~------------g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
..+|++|.+||+++++.+..... .+..++++.+++++||+||+++|..
T Consensus 26 ~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ai~~~ 85 (423)
T cd05297 26 ELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINTIQVG 85 (423)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEeeEec
Confidence 45688999999999887655431 1335678899999999999999954
No 203
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.75 E-value=0.24 Score=44.83 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=62.0
Q ss_pred CcHHHHHHHHhC--CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCC--ccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS--SHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~--~~~~~~v~~~~~~~l~~ 74 (301)
||...+..+.+. ++++. ++|+++++.+++.+. |+...++.++++++.|++++++|+. ...-.++... .++
T Consensus 13 ~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~---aL~- 88 (343)
T TIGR01761 13 FGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALARA---LLA- 88 (343)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHH---HHh-
Confidence 355566667664 46755 679999999888764 7778899999999899999998752 1101222211 221
Q ss_pred CCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.|+-|+--.-+..++++++.+..++
T Consensus 89 ----aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 89 ----RGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred ----CCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 3334444455557888888877765
No 204
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.72 E-value=0.054 Score=47.16 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=41.6
Q ss_pred CcHHHHHHHHhCC----CeEEEEcCChhhHHHHHh-----------CCCCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAG----YKMAVHDVNCNVMKMFSD-----------MGVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G----~~V~~~dr~~~~~~~l~~-----------~g~~~~~s~~e~~~~adiVi~~vp 55 (301)
||..+|..|+..| .+|.++|+++++.+.... ..++.++++.+++++||+|+++..
T Consensus 10 vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 10 VGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred HHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence 6889999999988 789999999877543322 123335667889999999999764
No 205
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.71 E-value=0.069 Score=47.45 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=39.4
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHH----HHhC----C----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSDM----G----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~----l~~~----g----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||..+|..|+.+|+ +|+++|+++++.+. +... + +..+++. +.+++||+||+++..+
T Consensus 9 vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p 77 (300)
T cd01339 9 VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIP 77 (300)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCC
Confidence 78999999998887 99999999876431 1111 1 2223444 5689999999988543
No 206
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.70 E-value=0.047 Score=40.85 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=45.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CC---HHHH-HhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ET---PFEV-AEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s---~~e~-~~~adiVi~~vp~~~~ 59 (301)
+|..+++.|.+.+.+|++.+++++.++.+.+.|..+. .+ +.++ +++++.|+++.+++..
T Consensus 9 ~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 9 IGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 4788999999977799999999999999998874321 12 2222 4689999999987654
No 207
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.68 E-value=0.15 Score=44.94 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=41.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+||.-|.+.|..|++++.. +.++++.+++||+|+.++.-+.- +.. .++ .+|.
T Consensus 180 GkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~-i~~------~~v-----k~ga 233 (299)
T PLN02516 180 GLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMM-IKG------DWI-----KPGA 233 (299)
T ss_pred hHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCc-cCH------HHc-----CCCC
Confidence 666666666666666665421 34678889999999999985432 222 123 3678
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
++||++..
T Consensus 234 vVIDvGin 241 (299)
T PLN02516 234 AVIDVGTN 241 (299)
T ss_pred EEEEeecc
Confidence 99998864
No 208
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.59 E-value=0.36 Score=45.68 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=75.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHhhcC-CCccccccCCCCCCcccCCC-CCC-CC
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQS----L--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP-ASR-NY 237 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~----~--G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~ 237 (301)
+.++.+|.+.|.+.+..+...+|++.+.++ + ++|..++.++++.|. .+++++..... .+...+ +.. -+
T Consensus 316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~---a~~~~~~l~nl~~ 392 (470)
T PTZ00142 316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKN---AFKKNPQLDLLFL 392 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHH---HHhcCCChhhhcC
Confidence 678999999999999999999999999873 4 899999999999886 45555432110 000000 000 01
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHC
Q 022170 238 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 280 (301)
Q Consensus 238 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 280 (301)
++.|. +......++.++..|-+.|+|+|.+.+++..|+.-...
T Consensus 393 ~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~ 437 (470)
T PTZ00142 393 DPDFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQ 437 (470)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 11111 23344556888999999999999999999966555433
No 209
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.56 E-value=0.17 Score=41.65 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=49.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH----HHHHhCCC---CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM----KMFSDMGV---PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~----~~l~~~g~---~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
.|.+||.-|.+.|..|+++|.+.-.. ..+..... ....++.+.+++|||||++++.+. +. +. ...+
T Consensus 74 VGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~--~~--i~--~d~i- 146 (197)
T cd01079 74 VGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPN--YK--VP--TELL- 146 (197)
T ss_pred chHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCC--Cc--cC--HHHc-
Confidence 48999999999999999997543221 00100000 001126788999999999999543 21 11 1233
Q ss_pred CCCCCCCeEEEEeCCCC
Q 022170 74 GGNSVRPQLLIDSSTID 90 (301)
Q Consensus 74 ~~~~~~~~ivid~st~~ 90 (301)
.+|.++||.++..
T Consensus 147 ----k~GavVIDVGi~~ 159 (197)
T cd01079 147 ----KDGAICINFASIK 159 (197)
T ss_pred ----CCCcEEEEcCCCc
Confidence 3578999998653
No 210
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.56 E-value=0.18 Score=44.20 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=40.7
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|.-|.+.|..|+++.. .+.++.+.+++||+||++++-+.- +.. ..+ .+|.
T Consensus 170 GkPla~lL~~~~atVtichs--------------~T~~l~~~~~~ADIvI~AvG~~~~-i~~------~~v-----k~Ga 223 (284)
T PRK14170 170 GKPVAQLLLNENATVTIAHS--------------RTKDLPQVAKEADILVVATGLAKF-VKK------DYI-----KPGA 223 (284)
T ss_pred hHHHHHHHHHCCCEEEEeCC--------------CCCCHHHHHhhCCEEEEecCCcCc-cCH------HHc-----CCCC
Confidence 55666666655555655532 124678889999999999995542 222 123 3578
Q ss_pred EEEEeCCCC
Q 022170 82 LLIDSSTID 90 (301)
Q Consensus 82 ivid~st~~ 90 (301)
++||+++..
T Consensus 224 vVIDvGin~ 232 (284)
T PRK14170 224 IVIDVGMDR 232 (284)
T ss_pred EEEEccCcc
Confidence 999988643
No 211
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.55 E-value=0.17 Score=44.57 Aligned_cols=62 Identities=10% Similarity=0.171 Sum_probs=39.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|.-|.++|..|+++.. .+.++++.+++||+||++++-+.- +.. .++ .+|.
T Consensus 171 GkPla~lL~~~~atVtv~hs--------------~T~~l~~~~~~ADIvIsAvGkp~~-i~~------~~i-----k~ga 224 (297)
T PRK14186 171 GKPLALMLLAANATVTIAHS--------------RTQDLASITREADILVAAAGRPNL-IGA------EMV-----KPGA 224 (297)
T ss_pred hHHHHHHHHHCCCEEEEeCC--------------CCCCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCC
Confidence 45555555555555554431 134678888999999999995542 222 123 3578
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
+|||++..
T Consensus 225 vVIDvGin 232 (297)
T PRK14186 225 VVVDVGIH 232 (297)
T ss_pred EEEEeccc
Confidence 99998854
No 212
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.54 E-value=0.19 Score=44.06 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=41.4
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.+.|..|++++. .+.++++..++||+|+.+++-+.- +.. .++ .+|.
T Consensus 172 GkPla~lL~~~~atVt~chs--------------~T~~l~~~~~~ADIvIsAvGk~~~-i~~------~~i-----k~ga 225 (284)
T PRK14177 172 GKPMAMLLTEMNATVTLCHS--------------KTQNLPSIVRQADIIVGAVGKPEF-IKA------DWI-----SEGA 225 (284)
T ss_pred hHHHHHHHHHCCCEEEEeCC--------------CCCCHHHHHhhCCEEEEeCCCcCc-cCH------HHc-----CCCC
Confidence 55666666666666665542 134678889999999999995542 222 233 3678
Q ss_pred EEEEeCCCC
Q 022170 82 LLIDSSTID 90 (301)
Q Consensus 82 ivid~st~~ 90 (301)
++||.++..
T Consensus 226 vVIDvGin~ 234 (284)
T PRK14177 226 VLLDAGYNP 234 (284)
T ss_pred EEEEecCcc
Confidence 999998643
No 213
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.50 E-value=0.18 Score=44.29 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=39.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|.-|.+.|..|+++.. .+.++++.+++||+||++++-+.- +.. .++ .+|.
T Consensus 168 GkPla~lL~~~~aTVtichs--------------~T~~l~~~~~~ADIvIsAvGkp~~-i~~------~~v-----k~Ga 221 (287)
T PRK14173 168 GKPLAALLLREDATVTLAHS--------------KTQDLPAVTRRADVLVVAVGRPHL-ITP------EMV-----RPGA 221 (287)
T ss_pred HHHHHHHHHHCCCEEEEeCC--------------CCCCHHHHHhhCCEEEEecCCcCc-cCH------HHc-----CCCC
Confidence 55555555555555555432 124678889999999999995542 221 233 3678
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
++||.++.
T Consensus 222 vVIDVGin 229 (287)
T PRK14173 222 VVVDVGIN 229 (287)
T ss_pred EEEEccCc
Confidence 99998864
No 214
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=94.46 E-value=0.044 Score=50.84 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=47.2
Q ss_pred cHHHHHHHHhCCCeEEEE------cCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 2 GFRMASNLMKAGYKMAVH------DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~------dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
|.+.|.+|...|++|++- |.+.+..+.+.+.|..+ .++.|+++.||+|++.+|+.. -..+..
T Consensus 48 G~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt~--q~~v~~ 115 (487)
T PRK05225 48 GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQ--HSDVVR 115 (487)
T ss_pred HHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChHH--HHHHHH
Confidence 778888999999999843 33345566666678765 689999999999999999763 455553
No 215
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.43 E-value=0.088 Score=40.22 Aligned_cols=91 Identities=21% Similarity=0.340 Sum_probs=54.7
Q ss_pred CcHHHHHHHHh-CCCeEE-EEcCChhh-H----HHH---HhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMK-AGYKMA-VHDVNCNV-M----KMF---SDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~-~G~~V~-~~dr~~~~-~----~~l---~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
||+.+++.+.+ .|+++. +++|+++. . ..+ ...|....++++++...+|+||-+.. +.. +.+.+..
T Consensus 12 MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~-p~~-~~~~~~~--- 86 (124)
T PF01113_consen 12 MGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN-PDA-VYDNLEY--- 86 (124)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH-HHHHHHH---
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC-hHH-hHHHHHH---
Confidence 89999999988 778865 56888721 1 111 13467778899999999999998873 444 5554432
Q ss_pred cccCCCCCCCeEEEEeCCCCHHHHHHHHHH
Q 022170 71 LLQGGNSVRPQLLIDSSTIDPQTSRNISAA 100 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~ 100 (301)
.++ .+-.+|+=+|+.+++...++.+.
T Consensus 87 ~~~----~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 87 ALK----HGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp HHH----HT-EEEEE-SSSHHHHHHHHHHH
T ss_pred HHh----CCCCEEEECCCCCHHHHHHHHHH
Confidence 222 12245555566666666666554
No 216
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.40 E-value=0.19 Score=43.86 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=39.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+++.-|.++|..|++++. .+.++.+.+++||+||.+++-+.- +.. .++ .+|.
T Consensus 171 GkPla~lL~~~~AtVt~chs--------------~T~~l~~~~~~ADIvIsAvGkp~~-i~~------~~i-----k~ga 224 (278)
T PRK14172 171 GKPVAQLLLNENATVTICHS--------------KTKNLKEVCKKADILVVAIGRPKF-IDE------EYV-----KEGA 224 (278)
T ss_pred hHHHHHHHHHCCCEEEEeCC--------------CCCCHHHHHhhCCEEEEcCCCcCc-cCH------HHc-----CCCc
Confidence 55566666555555555542 134678889999999999995542 222 123 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 225 vVIDvGi 231 (278)
T PRK14172 225 IVIDVGT 231 (278)
T ss_pred EEEEeec
Confidence 9999864
No 217
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.38 E-value=0.097 Score=51.38 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=48.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CCH---HHH-HhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETP---FEV-AEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~---~e~-~~~adiVi~~vp~~~~~~~~v~ 65 (301)
+|..+++.|.++|+++++.|.|+++++.+.+.|..+. +++ +++ ++++|.++++++++.. ...++
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~-n~~i~ 482 (621)
T PRK03562 411 FGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT-SLQLV 482 (621)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHH-HHHHH
Confidence 4788999999999999999999999999988774331 222 222 4589999999998765 44443
No 218
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.37 E-value=0.19 Score=43.93 Aligned_cols=39 Identities=8% Similarity=0.121 Sum_probs=28.3
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.++++..++||+||++++-+.- +.. .++ .+|.++||++.
T Consensus 192 ~nl~~~~~~ADIvIsAvGkp~~-i~~------~~v-----k~GavVIDvGi 230 (282)
T PRK14166 192 KDLSLYTRQADLIIVAAGCVNL-LRS------DMV-----KEGVIVVDVGI 230 (282)
T ss_pred CCHHHHHhhCCEEEEcCCCcCc-cCH------HHc-----CCCCEEEEecc
Confidence 4688889999999999996543 222 123 36789999885
No 219
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.33 E-value=0.071 Score=47.54 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=41.9
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHHhC--------C--CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G--VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~--------g--~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..|+..| ++|.++||++++++.+... + ........+.+++||+||++...+
T Consensus 11 vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 11 VGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 5889999999999 6899999999987655432 1 112223345578999999999864
No 220
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.32 E-value=0.17 Score=44.31 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=40.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|.-|.+.|..|++++. .+.++.+.+++||+||.+++.+.- +.. ..+ .+|.
T Consensus 171 G~Pla~lL~~~~atVt~chs--------------~t~~l~~~~~~ADIvI~AvG~p~~-i~~------~~i-----k~ga 224 (284)
T PRK14190 171 GKPVGQLLLNENATVTYCHS--------------KTKNLAELTKQADILIVAVGKPKL-ITA------DMV-----KEGA 224 (284)
T ss_pred HHHHHHHHHHCCCEEEEEeC--------------CchhHHHHHHhCCEEEEecCCCCc-CCH------HHc-----CCCC
Confidence 66666666666666666542 124678889999999999985442 221 123 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 225 vVIDvGi 231 (284)
T PRK14190 225 VVIDVGV 231 (284)
T ss_pred EEEEeec
Confidence 9999875
No 221
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.29 E-value=0.069 Score=47.01 Aligned_cols=58 Identities=17% Similarity=0.328 Sum_probs=42.2
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCC-----CCCCC---CHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMG-----VPTKE---TPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g-----~~~~~---s~~e~~~~adiVi~~vp~~~ 58 (301)
+|++++..|.+.|. +|+++||++++.+.+.+.- +.... ++.+...++|+||-|+|...
T Consensus 136 aarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 136 TSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 57889999999996 6999999999998887531 11111 22344567899999998543
No 222
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.21 E-value=0.22 Score=43.63 Aligned_cols=39 Identities=8% Similarity=0.163 Sum_probs=28.3
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.++++.+++||+||++++-+.- +.. .++ .+|.++||.+.
T Consensus 191 ~~l~~~~~~ADIvI~AvG~p~~-i~~------~~v-----k~GavVIDvGi 229 (282)
T PRK14169 191 RNLKQLTKEADILVVAVGVPHF-IGA------DAV-----KPGAVVIDVGI 229 (282)
T ss_pred CCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCcEEEEeec
Confidence 4678889999999999996543 222 133 35789999875
No 223
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.08 E-value=0.19 Score=42.80 Aligned_cols=78 Identities=22% Similarity=0.209 Sum_probs=53.9
Q ss_pred EEEEcCChhhHHHHHhC-CCCCCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC---C
Q 022170 16 MAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI---D 90 (301)
Q Consensus 16 V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~---~ 90 (301)
|.+||+++++.+.+.+. |+...+++++.+ .+.|+|++|.|++. ..++... .++. +..+++ .|.. +
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~--H~e~a~~---aL~a----GkhVl~-~s~gAlad 74 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEA--VKEYAEK---ILKN----GKDLLI-MSVGALAD 74 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHH--HHHHHHH---HHHC----CCCEEE-ECCcccCC
Confidence 45799999999887664 677888999986 57999999999665 4555432 3321 223555 4543 5
Q ss_pred HHHHHHHHHHHhh
Q 022170 91 PQTSRNISAAVSN 103 (301)
Q Consensus 91 p~~~~~~~~~~~~ 103 (301)
.+..+++.+..++
T Consensus 75 ~e~~~~l~~aA~~ 87 (229)
T TIGR03855 75 RELRERLREVARS 87 (229)
T ss_pred HHHHHHHHHHHHh
Confidence 5777777777664
No 224
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.06 E-value=0.21 Score=43.67 Aligned_cols=61 Identities=11% Similarity=0.158 Sum_probs=38.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.++|..|++++. .+.++.+..++||+||++++-+.- +.. .++ .+|.
T Consensus 171 GkPla~lL~~~~ATVt~chs--------------~T~dl~~~~k~ADIvIsAvGkp~~-i~~------~~v-----k~ga 224 (282)
T PRK14180 171 GKPVSQLLLNAKATVTTCHR--------------FTTDLKSHTTKADILIVAVGKPNF-ITA------DMV-----KEGA 224 (282)
T ss_pred hHHHHHHHHHCCCEEEEEcC--------------CCCCHHHHhhhcCEEEEccCCcCc-CCH------HHc-----CCCc
Confidence 55555555555555555432 124677788999999999996543 322 123 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 225 vVIDvGi 231 (282)
T PRK14180 225 VVIDVGI 231 (282)
T ss_pred EEEEecc
Confidence 9999875
No 225
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.04 E-value=0.25 Score=43.32 Aligned_cols=40 Identities=8% Similarity=0.104 Sum_probs=28.8
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 89 (301)
.++.+.+++||+||++++-+.- +.. .++ .+|.++||++..
T Consensus 195 ~~l~~~~k~ADIvV~AvGkp~~-i~~------~~i-----k~GavVIDvGin 234 (284)
T PRK14193 195 RDLAAHTRRADIIVAAAGVAHL-VTA------DMV-----KPGAAVLDVGVS 234 (284)
T ss_pred CCHHHHHHhCCEEEEecCCcCc-cCH------HHc-----CCCCEEEEcccc
Confidence 4788889999999999995542 222 123 357899998753
No 226
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=94.03 E-value=1.3 Score=37.95 Aligned_cols=243 Identities=13% Similarity=0.150 Sum_probs=123.0
Q ss_pred CcHHHHHHHHhCCC----eEEEEcCChhhHHH-HHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKM-FSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~----~V~~~dr~~~~~~~-l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
|..++++.+.+.|. +++.+-.+...... +...|...+.+..++++.+|++++++. +.. +.+++.+.....
T Consensus 11 ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK-p~~-i~~vls~~~~~~--- 85 (267)
T KOG3124|consen 11 MAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK-PQV-IESVLSEIKPKV--- 85 (267)
T ss_pred hHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec-chh-HHHHhhcCcccc---
Confidence 44566777777774 45555443222333 666788877777899999999999998 666 888887754432
Q ss_pred CCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC---CHHHHHHHHH
Q 022170 76 NSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKP 151 (301)
Q Consensus 76 ~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ 151 (301)
.++++++-+ -++.-++. .+.+.. ..+++-. +...|....+|. .++.-| ..+..+.++.
T Consensus 86 --~~~~iivS~aaG~tl~~l---~~~l~~-----------~~rviRv-mpNtp~~v~eg~-sv~~~g~~~~~~D~~l~~~ 147 (267)
T KOG3124|consen 86 --SKGKIIVSVAAGKTLSSL---ESKLSP-----------PTRVIRV-MPNTPSVVGEGA-SVYAIGCHATNEDLELVEE 147 (267)
T ss_pred --ccceEEEEEeecccHHHH---HHhcCC-----------CCceEEe-cCCChhhhhcCc-EEEeeCCCcchhhHHHHHH
Confidence 245677644 33333322 222211 0122211 122333444555 344433 3455688999
Q ss_pred HHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCccccccCCCCCCcc
Q 022170 152 LFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVM 228 (301)
Q Consensus 152 ll~~~~~~~~~~g~--~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 228 (301)
++...|... .+-+ +.....+-=..-.+.+..+-.++ .-+-+.|++.+..+++..+.- |..-+...-..-|..+
T Consensus 148 ll~~vG~~~-evpE~~iDavTgLsGSgPAy~f~~ieaLa---dGgVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~L 223 (267)
T KOG3124|consen 148 LLSAVGLCE-EVPEKCIDAVTGLSGSGPAYVFVAIEALA---DGGVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQL 223 (267)
T ss_pred HHHhcCcce-eCcHHhhhHHhhccCCcHHHHHHHHHHHh---ccccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHH
Confidence 999988632 2211 11111111111122222222222 344578888887777755542 1111100001112222
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 229 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
+ +.-.+|+.+.. +.+...++-|++.-++.++.+--+++.+.|
T Consensus 224 k----d~V~SPgG~TI-------~glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 224 K----DDVCSPGGTTI-------YGLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred h----CCCCCCCcchH-------HHHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 1 11123433222 334455677888888888877777766544
No 227
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.99 E-value=0.24 Score=43.45 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=39.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|.-|.+.|..|++++. .+.++.+.+++||+||.++.-+.- +.. .++ .+|.
T Consensus 177 GkPla~lL~~~~atVtv~hs--------------~T~~l~~~~~~ADIvv~AvG~p~~-i~~------~~v-----k~ga 230 (287)
T PRK14176 177 GKPMAAMLLNRNATVSVCHV--------------FTDDLKKYTLDADILVVATGVKHL-IKA------DMV-----KEGA 230 (287)
T ss_pred HHHHHHHHHHCCCEEEEEec--------------cCCCHHHHHhhCCEEEEccCCccc-cCH------HHc-----CCCc
Confidence 55566666555555655542 234678888999999999985442 221 133 3578
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
++||++..
T Consensus 231 vVIDvGin 238 (287)
T PRK14176 231 VIFDVGIT 238 (287)
T ss_pred EEEEeccc
Confidence 99998753
No 228
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.97 E-value=0.25 Score=43.53 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=39.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+++.-|.++|..|++++.. +.++.+.+++||+||++++-+.- +.. .++ .+|.
T Consensus 173 GkPla~lL~~~~aTVt~chs~--------------T~~l~~~~~~ADIvVsAvGkp~~-i~~------~~i-----k~ga 226 (294)
T PRK14187 173 GKPMACLLLGENCTVTTVHSA--------------TRDLADYCSKADILVAAVGIPNF-VKY------SWI-----KKGA 226 (294)
T ss_pred hHHHHHHHhhCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCC
Confidence 555565555555555555421 24678889999999999996543 322 123 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||++.
T Consensus 227 iVIDVGi 233 (294)
T PRK14187 227 IVIDVGI 233 (294)
T ss_pred EEEEecc
Confidence 9999875
No 229
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.88 E-value=0.2 Score=43.74 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=27.4
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.++.+.+++||+||.+++-+.- +.. .++ ++|.++||.+.
T Consensus 187 ~~L~~~~~~ADIvI~Avgk~~l-v~~------~~v-----k~GavVIDVgi 225 (279)
T PRK14178 187 ENLKAELRQADILVSAAGKAGF-ITP------DMV-----KPGATVIDVGI 225 (279)
T ss_pred hHHHHHHhhCCEEEECCCcccc-cCH------HHc-----CCCcEEEEeec
Confidence 4678889999999999984432 221 123 36789999875
No 230
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.78 E-value=0.43 Score=42.88 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=60.4
Q ss_pred HHHHHHHhCCC--e-EEEEcCChhhHHHHHhC-CC-CCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 4 RMASNLMKAGY--K-MAVHDVNCNVMKMFSDM-GV-PTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 4 ~lA~~L~~~G~--~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
..+..+.+.+. . |.++|+++++++.+.+. |+ ...+|+++++++ .|+|++|+|++.. ..-+.. .++.
T Consensus 18 ~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H-~e~~~~----AL~a-- 90 (342)
T COG0673 18 AHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH-AELALA----ALEA-- 90 (342)
T ss_pred HhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh-HHHHHH----HHhc--
Confidence 35556666653 3 55789999998887765 65 378899999875 5999999998765 333322 2221
Q ss_pred CCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
+..++++- =+.++++++++.+..++
T Consensus 91 --GkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 91 --GKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred --CCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 22344443 25677888888877765
No 231
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.77 E-value=0.12 Score=46.22 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=40.7
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHH----HHhCC-----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDMG-----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~----l~~~g-----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..|+..| ++|.++|+++++.+. +.... ....++..+.+++||+||+|.+.+
T Consensus 11 VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 11 VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 4889999999999 689999999887653 32211 011122336689999999999975
No 232
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.75 E-value=0.3 Score=42.74 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=39.0
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+++.-|.+.|..|++++.. +.++++.+++||+|+++++-+.- +.. .++ .+|.
T Consensus 170 GkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~-i~~------~~i-----k~ga 223 (282)
T PRK14182 170 GKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAEL-VKG------AWV-----KEGA 223 (282)
T ss_pred hHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCc-cCH------HHc-----CCCC
Confidence 555555555555555554321 34677888999999999995442 222 123 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 224 iVIDvGi 230 (282)
T PRK14182 224 VVIDVGM 230 (282)
T ss_pred EEEEeec
Confidence 9999875
No 233
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.75 E-value=0.31 Score=42.81 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=39.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+++.-|.+.|..|++++. .+.++.+.+++||+|+.++.-+.- +..- ++ .+|.
T Consensus 172 GkPla~lL~~~~ATVtichs--------------~T~~L~~~~~~ADIvV~AvGkp~~-i~~~------~v-----k~Ga 225 (288)
T PRK14171 172 GKPLSALLLKENCSVTICHS--------------KTHNLSSITSKADIVVAAIGSPLK-LTAE------YF-----NPES 225 (288)
T ss_pred hHHHHHHHHHCCCEEEEeCC--------------CCCCHHHHHhhCCEEEEccCCCCc-cCHH------Hc-----CCCC
Confidence 55666666555555555542 124678888999999999995543 3321 22 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||++.
T Consensus 226 vVIDvGi 232 (288)
T PRK14171 226 IVIDVGI 232 (288)
T ss_pred EEEEeec
Confidence 9999875
No 234
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.67 E-value=0.31 Score=42.65 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=39.3
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.++|..|+++.. .+.++.+.+++||+|+++++.+.- +.. .++ .+|.
T Consensus 170 G~Pla~lL~~~~AtVti~hs--------------~T~~l~~~~~~ADIvV~AvGkp~~-i~~------~~v-----k~ga 223 (281)
T PRK14183 170 GKPMAALLLNANATVDICHI--------------FTKDLKAHTKKADIVIVGVGKPNL-ITE------DMV-----KEGA 223 (281)
T ss_pred hHHHHHHHHHCCCEEEEeCC--------------CCcCHHHHHhhCCEEEEecCcccc-cCH------HHc-----CCCc
Confidence 55555555555555554432 124577889999999999985542 222 123 3578
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
++||+++.
T Consensus 224 vvIDvGin 231 (281)
T PRK14183 224 IVIDIGIN 231 (281)
T ss_pred EEEEeecc
Confidence 99998853
No 235
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=93.67 E-value=0.095 Score=46.97 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=50.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh----C-----------CCC-------CCCCH-HHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----M-----------GVP-------TKETP-FEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~----~-----------g~~-------~~~s~-~e~~~~adiVi~~vp~~ 57 (301)
||.+||..+..+|++++..|.|..-++.-.. . +.+ ...++ -+-++++|.|+-++-.+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 9999999999999999999998655432111 0 111 11111 12356899998777766
Q ss_pred ccchhhhhcCCCccccCCCCCCCe-EEEEeCCCCHH
Q 022170 58 SHQVLDVYNGPNGLLQGGNSVRPQ-LLIDSSTIDPQ 92 (301)
Q Consensus 58 ~~~~~~v~~~~~~~l~~~~~~~~~-ivid~st~~p~ 92 (301)
-....+++.+++.+.+ +.+ .-.++|+.++.
T Consensus 81 l~Lk~~l~~~le~v~~-----~~~i~gsntSs~~~~ 111 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEP-----PKCIRGSNTSSLDIN 111 (380)
T ss_pred HHHHHHHHHHHHhhcC-----CcceeeeccccCChH
Confidence 4423444444444442 222 33455555554
No 236
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.54 E-value=0.41 Score=41.73 Aligned_cols=93 Identities=15% Similarity=0.301 Sum_probs=59.3
Q ss_pred CcHHHHHHHHh-CCCeEE-EEcCC-hhhH----HHHHh---CCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMK-AGYKMA-VHDVN-CNVM----KMFSD---MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~-~G~~V~-~~dr~-~~~~----~~l~~---~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
||..+++.+.+ .++++. ++||+ +++. ..+.. .|+..+++++++...+|+|+.|.|... ..+.+..
T Consensus 13 MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~--~~~~~~~--- 87 (266)
T TIGR00036 13 MGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEG--VLNHLKF--- 87 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHH--HHHHHHH---
Confidence 78999999886 477765 57854 3221 12211 246667888887557999999998443 4555432
Q ss_pred cccCCCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 71 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
.++ .+..+|+-+++.+++..+++.+...
T Consensus 88 al~----~g~~vVigttg~~~e~~~~l~~aA~ 115 (266)
T TIGR00036 88 ALE----HGVRLVVGTTGFSEEDKQELADLAE 115 (266)
T ss_pred HHH----CCCCEEEECCCCCHHHHHHHHHHHh
Confidence 232 1235777777788888877776654
No 237
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.50 E-value=0.13 Score=45.83 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=42.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-------CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adiVi~~vp 55 (301)
+|+.+++.|.++||+|.+..|++++...+...+++. ..++.++++++|+||-+++
T Consensus 12 iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 12 LGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred HHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 488999999999999999999987765554444322 2345677889999998865
No 238
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.50 E-value=0.24 Score=43.43 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=38.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.+.|..|++++.. +.++.+.+++||+|+.+++.+.- +.. .++ .+|.
T Consensus 170 G~Pla~lL~~~gAtVtv~hs~--------------t~~l~~~~~~ADIvV~AvG~p~~-i~~------~~v-----k~Ga 223 (285)
T PRK14191 170 GKPLAMLMLNAGASVSVCHIL--------------TKDLSFYTQNADIVCVGVGKPDL-IKA------SMV-----KKGA 223 (285)
T ss_pred HHHHHHHHHHCCCEEEEEeCC--------------cHHHHHHHHhCCEEEEecCCCCc-CCH------HHc-----CCCc
Confidence 556666666666666655321 23456788999999999986542 221 123 3678
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 224 vVIDvGi 230 (285)
T PRK14191 224 VVVDIGI 230 (285)
T ss_pred EEEEeec
Confidence 9999875
No 239
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.48 E-value=0.33 Score=43.63 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=39.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.++|..|+++.. .+.++.+.+++|||||.+++-+.- +.. .++ .+|.
T Consensus 227 GkPla~LL~~~~ATVTicHs--------------~T~nl~~~~~~ADIvIsAvGkp~~-v~~------d~v-----k~Ga 280 (345)
T PLN02897 227 GLPMSLLLQRHDATVSTVHA--------------FTKDPEQITRKADIVIAAAGIPNL-VRG------SWL-----KPGA 280 (345)
T ss_pred cHHHHHHHHHCCCEEEEEcC--------------CCCCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCC
Confidence 55555555555555554432 124678889999999999995542 222 233 3678
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
+|||.+..
T Consensus 281 vVIDVGin 288 (345)
T PLN02897 281 VVIDVGTT 288 (345)
T ss_pred EEEEcccc
Confidence 99998753
No 240
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.34 E-value=0.1 Score=48.97 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=44.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-CCCCC-------CCCHHHH-HhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT-------KETPFEV-AEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-~g~~~-------~~s~~e~-~~~adiVi~~vp~~~ 58 (301)
+|..++..|.+.|++|+++++++++.+.+.+ .+... ...+.++ +.++|.|+++++++.
T Consensus 11 ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 11 VGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 5889999999999999999999999988865 33221 1233444 678999999999764
No 241
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.30 E-value=0.29 Score=34.63 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~ 59 (301)
||.+++..|.+. +.+|++||| |++|.|++.+..
T Consensus 34 ~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~ 67 (86)
T cd05191 34 VGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVP 67 (86)
T ss_pred HHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCC
Confidence 477888888887 578889988 999999986543
No 242
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.21 E-value=0.37 Score=43.49 Aligned_cols=61 Identities=16% Similarity=0.283 Sum_probs=39.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.++|..|+++.. .+.++.+.+++|||||.+++-+.- +.. .++ .+|.
T Consensus 244 GkPLa~LL~~~~ATVTicHs--------------~T~nl~~~~r~ADIVIsAvGkp~~-i~~------d~v-----K~GA 297 (364)
T PLN02616 244 GMPAALLLQREDATVSIVHS--------------RTKNPEEITREADIIISAVGQPNM-VRG------SWI-----KPGA 297 (364)
T ss_pred cHHHHHHHHHCCCeEEEeCC--------------CCCCHHHHHhhCCEEEEcCCCcCc-CCH------HHc-----CCCC
Confidence 55666666555555555532 134678889999999999995543 222 223 3678
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
+|||.+.
T Consensus 298 vVIDVGI 304 (364)
T PLN02616 298 VVIDVGI 304 (364)
T ss_pred EEEeccc
Confidence 9999875
No 243
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=93.17 E-value=0.62 Score=39.19 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=45.8
Q ss_pred cHHHHHHHHhCC---Ce-EEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 2 GFRMASNLMKAG---YK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 2 G~~lA~~L~~~G---~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
|..+.. |.+.| ++ |.+|||+.+++..+.+. +...+++++|.+...|+|+-|-. +++ +++...
T Consensus 12 G~~l~e-~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~A-v~e~~~ 78 (255)
T COG1712 12 GKFLLE-LVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEA-VREYVP 78 (255)
T ss_pred HHHHHH-HHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHH-HHHHhH
Confidence 444444 34444 54 77899999999877664 55566899999999999999987 555 777764
No 244
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.15 E-value=0.15 Score=43.27 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=43.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChh--hHHHHHhCCCCCC-------CCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK-------ETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~g~~~~-------~s~~e~~~~adiVi~~vp~ 56 (301)
.|.+++..|.+.||+|.+.-|++. ..+.+...|++.. +++.++++++|.||++++.
T Consensus 10 ~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 10 QGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp HHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 388999999999999999988864 4667777775421 3556678899999999984
No 245
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.12 E-value=0.27 Score=44.10 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=38.1
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHh--------CC----CCCCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adiVi~~v 54 (301)
||.++|..++..| .+|.++|+++++.+...- .+ +..+++++ ++++||+|+++.
T Consensus 16 vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 16 IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 6889999999888 689999999876432111 01 12234555 779999999999
No 246
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.10 E-value=0.4 Score=42.10 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=28.7
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 89 (301)
.++++.+++||+||.+++-+.- +.. .++ .+|.++||.+..
T Consensus 192 ~~l~~~~~~ADIvV~AvG~p~~-i~~------~~i-----k~GavVIDvGin 231 (287)
T PRK14181 192 ENLTEILKTADIIIAAIGVPLF-IKE------EMI-----AEKAVIVDVGTS 231 (287)
T ss_pred CCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCCEEEEeccc
Confidence 4688889999999999995542 222 233 367899998753
No 247
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=92.83 E-value=0.16 Score=43.99 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=41.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHh-cCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~-~adiVi~~vp~ 56 (301)
+|++|...|.+.||+|++..|++.+.+.........-+.+++... .+|+||=--..
T Consensus 10 IG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~ 66 (297)
T COG1090 10 IGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGE 66 (297)
T ss_pred hhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCC
Confidence 699999999999999999999998887665444433345555555 69998865443
No 248
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.75 E-value=0.26 Score=44.88 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeE
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQL 82 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~i 82 (301)
..++..|.+.|.+|.+||.....-......+.....++.+++++||+++++..|++ ++++-.... . .++++
T Consensus 333 ~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~e--f~~~d~~~~-~------m~~~~ 403 (414)
T COG1004 333 LDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWDE--FRDLDFEKL-L------MKTPV 403 (414)
T ss_pred HHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHHH--HhccChhhh-h------ccCCE
Confidence 35788999999999999964332222221246888999999999999999999765 566533211 1 23467
Q ss_pred EEEe
Q 022170 83 LIDS 86 (301)
Q Consensus 83 vid~ 86 (301)
|+|-
T Consensus 404 v~Dg 407 (414)
T COG1004 404 VIDG 407 (414)
T ss_pred EEec
Confidence 7774
No 249
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.68 E-value=0.57 Score=41.38 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=28.2
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 89 (301)
.++++.+++||+||.++.-+.- +.. .++ .+|.++||.+..
T Consensus 200 ~~l~~~~~~ADIvVsAvGkp~~-i~~------~~i-----k~gavVIDvGin 239 (297)
T PRK14168 200 KNLARHCQRADILIVAAGVPNL-VKP------EWI-----KPGATVIDVGVN 239 (297)
T ss_pred cCHHHHHhhCCEEEEecCCcCc-cCH------HHc-----CCCCEEEecCCC
Confidence 4678889999999999985442 222 223 367899998753
No 250
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=92.65 E-value=0.099 Score=39.47 Aligned_cols=59 Identities=22% Similarity=0.442 Sum_probs=40.4
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
|.-+.++|.++||+|+..+...+.+ .|.....++.|.-...|++++++|. .. +.+++.+
T Consensus 16 g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~-~~-~~~~v~~ 74 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPP-DK-VPEIVDE 74 (116)
T ss_dssp HHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-H-HH-HHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCH-HH-HHHHHHH
Confidence 5667889999999999888665443 3677888998844789999999994 44 6677654
No 251
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=92.48 E-value=0.23 Score=42.70 Aligned_cols=76 Identities=9% Similarity=0.005 Sum_probs=51.4
Q ss_pred CeEEEEcCChhhHHHHHhC----------CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEE
Q 022170 14 YKMAVHDVNCNVMKMFSDM----------GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLL 83 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~----------g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~iv 83 (301)
.+|.+|+|+++.+..+++. -+..+.++++++..+|||+.|++. .+.++++. .+ .+| +.
T Consensus 165 reVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls----tePilfge--wl-----kpg-th 232 (333)
T KOG3007|consen 165 REVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS----TEPILFGE--WL-----KPG-TH 232 (333)
T ss_pred eEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc----CCceeeee--ee-----cCC-ce
Confidence 3799999999988887762 245577899999999999999995 34555432 22 234 66
Q ss_pred EEeCCCCHHHHHHHHHHH
Q 022170 84 IDSSTIDPQTSRNISAAV 101 (301)
Q Consensus 84 id~st~~p~~~~~~~~~~ 101 (301)
||.=+..-...++....+
T Consensus 233 IdlVGsf~p~mhEcDdel 250 (333)
T KOG3007|consen 233 IDLVGSFKPVMHECDDEL 250 (333)
T ss_pred EeeeccCCchHHHHhHHH
Confidence 766444444455555444
No 252
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=92.27 E-value=0.091 Score=39.89 Aligned_cols=80 Identities=20% Similarity=0.155 Sum_probs=46.9
Q ss_pred CcHHHHHHHHhCCC-e-EEEEcCChhhHHHHHhC--------CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMKAGY-K-MAVHDVNCNVMKMFSDM--------GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~-V~~~dr~~~~~~~l~~~--------g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
+|..|.+.|.++-+ + +.++.++++.-..+... .....+...+.+.++|+||+|+|+.. .++....
T Consensus 11 vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~--~~~~~~~--- 85 (121)
T PF01118_consen 11 VGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA--SKELAPK--- 85 (121)
T ss_dssp HHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH--HHHHHHH---
T ss_pred HHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH--HHHHHHH---
Confidence 47889888888542 4 45567666332233222 12222223445689999999999654 4555432
Q ss_pred cccCCCCCCCeEEEEeCCCC
Q 022170 71 LLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~ 90 (301)
++ .+|..|||.|+..
T Consensus 86 ~~-----~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 86 LL-----KAGIKVIDLSGDF 100 (121)
T ss_dssp HH-----HTTSEEEESSSTT
T ss_pred Hh-----hCCcEEEeCCHHH
Confidence 22 2567999999754
No 253
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.21 E-value=0.62 Score=41.02 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 89 (301)
.++.+.+++||+||++++-+.- +.. .++ .+|.+|||++..
T Consensus 196 ~nl~~~~~~ADIvIsAvGkp~~-i~~------~~v-----k~gavVIDvGin 235 (293)
T PRK14185 196 KNLKKECLEADIIIAALGQPEF-VKA------DMV-----KEGAVVIDVGTT 235 (293)
T ss_pred CCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCCEEEEecCc
Confidence 4678889999999999996543 222 233 367899998863
No 254
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.21 E-value=0.5 Score=41.60 Aligned_cols=61 Identities=13% Similarity=0.247 Sum_probs=42.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+++..|.+.|..|++++|. +.++.+.++++|+||.+++.+.- +.. ..+ .++.
T Consensus 172 Gkpia~~L~~~gatVtv~~~~--------------t~~L~~~~~~aDIvI~AtG~~~~-v~~------~~l-----k~ga 225 (283)
T PRK14192 172 GKPMAMMLLNANATVTICHSR--------------TQNLPELVKQADIIVGAVGKPEL-IKK------DWI-----KQGA 225 (283)
T ss_pred HHHHHHHHHhCCCEEEEEeCC--------------chhHHHHhccCCEEEEccCCCCc-CCH------HHc-----CCCC
Confidence 778888888888888888862 23456666899999999974331 211 122 3567
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
+++|+..
T Consensus 226 vViDvg~ 232 (283)
T PRK14192 226 VVVDAGF 232 (283)
T ss_pred EEEEEEE
Confidence 9999864
No 255
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.01 E-value=0.55 Score=41.21 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=27.7
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.++.+.+++||+||.+++.+.- +.. .++ .+|.++||.+.
T Consensus 196 ~~l~~~~~~ADIVI~AvG~p~l-i~~------~~v-----k~GavVIDVGi 234 (286)
T PRK14184 196 PDLAEECREADFLFVAIGRPRF-VTA------DMV-----KPGAVVVDVGI 234 (286)
T ss_pred hhHHHHHHhCCEEEEecCCCCc-CCH------HHc-----CCCCEEEEeee
Confidence 3678889999999999985543 222 223 35789999874
No 256
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=92.00 E-value=4.2 Score=34.14 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 33 GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 33 g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
|+.++++.+|+++++|+|+.=+|-... -.+++.. ++.. -++|.++-+..|+.-..-.++-+.+.
T Consensus 126 g~~vttddreavedad~iitwlpkg~~-qpdiikk---fidd--ipegaivthactipttkf~kifed~g 189 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGV-QPDIIKK---FIDD--IPEGAIVTHACTIPTTKFKKIFEDMG 189 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCC-CccHHHH---HHhc--CCCCceEeeecccchHHHHHHHHHhC
Confidence 567788889999999999999996543 2333322 2221 24678999988887665555555443
No 257
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=91.81 E-value=0.7 Score=40.82 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=59.4
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
|..+..+|.+.||+ .+|-.||.+ .+.+ .|.+...|+.++-+. .|++++++|.+. +.+++.+ ..+. .
T Consensus 21 g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~~--v~~~l~e---~~~~---g 89 (291)
T PRK05678 21 GTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPPF--AADAILE---AIDA---G 89 (291)
T ss_pred HHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHHH--HHHHHHH---HHHC---C
Confidence 56777888888997 555455542 2222 378888999999886 899999999543 5666543 2221 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
-+..+|-+++...+..+++.+...+
T Consensus 90 vk~avI~s~Gf~~~~~~~l~~~a~~ 114 (291)
T PRK05678 90 IDLIVCITEGIPVLDMLEVKAYLER 114 (291)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Confidence 1246777777765545566666554
No 258
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.63 E-value=0.89 Score=38.62 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=49.4
Q ss_pred CcHHHHHHHHhCCC---eEEEEcCC----hhhH-------HHHHhC-CC-CCCCCHHHHHhcCCEEEEecCCCccchhhh
Q 022170 1 MGFRMASNLMKAGY---KMAVHDVN----CNVM-------KMFSDM-GV-PTKETPFEVAEASDVVITMLPSSSHQVLDV 64 (301)
Q Consensus 1 mG~~lA~~L~~~G~---~V~~~dr~----~~~~-------~~l~~~-g~-~~~~s~~e~~~~adiVi~~vp~~~~~~~~v 64 (301)
+|.++|..|.+.|. +|+++||+ .++. ..+.+. +. ....++.++++++|+||-++|.... .++.
T Consensus 36 Ag~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT~~G~~-~~~~ 114 (226)
T cd05311 36 AGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVSRPGVV-KKEM 114 (226)
T ss_pred HHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCCCCCCC-CHHH
Confidence 47889999999996 59999998 4443 223222 11 1113677888899999999983322 2233
Q ss_pred hcCCCccccCCCCCCCeEEEEeCCCC
Q 022170 65 YNGPNGLLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 65 ~~~~~~~l~~~~~~~~~ivid~st~~ 90 (301)
+.. + .+..++.+.++-.
T Consensus 115 l~~----m-----~~~~ivf~lsnP~ 131 (226)
T cd05311 115 IKK----M-----AKDPIVFALANPV 131 (226)
T ss_pred HHh----h-----CCCCEEEEeCCCC
Confidence 321 1 1345777888443
No 259
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=91.60 E-value=0.31 Score=44.24 Aligned_cols=80 Identities=23% Similarity=0.194 Sum_probs=47.7
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHh-C----C---CCCC-CCHHHHHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M----G---VPTK-ETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~-~----g---~~~~-~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
+|..+.+.|.++ ++++. +++++++.-+.+.. . + .... .+.++...++|+||+|+|+.. .+++...
T Consensus 12 vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~--s~~~~~~-- 87 (346)
T TIGR01850 12 TGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV--SAELAPE-- 87 (346)
T ss_pred HHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH--HHHHHHH--
Confidence 477888888876 56777 55644422222221 1 1 1111 145566568999999999765 4555432
Q ss_pred ccccCCCCCCCeEEEEeCCCC
Q 022170 70 GLLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~st~~ 90 (301)
+. ..|+.|||.|+..
T Consensus 88 -~~-----~~G~~VIDlS~~f 102 (346)
T TIGR01850 88 -LL-----AAGVKVIDLSADF 102 (346)
T ss_pred -HH-----hCCCEEEeCChhh
Confidence 22 2467999999753
No 260
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=91.56 E-value=0.85 Score=39.77 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=41.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
.|.+|+.-|...++.|++++.. +.++.+.+++||+|+.++.-+.- ++ ..++ .+|
T Consensus 168 VGkPla~lL~~~naTVtvcHs~--------------T~~l~~~~k~ADIvv~AvG~p~~-i~------~d~v-----k~g 221 (283)
T COG0190 168 VGKPLALLLLNANATVTVCHSR--------------TKDLASITKNADIVVVAVGKPHF-IK------ADMV-----KPG 221 (283)
T ss_pred CcHHHHHHHHhCCCEEEEEcCC--------------CCCHHHHhhhCCEEEEecCCccc-cc------cccc-----cCC
Confidence 3666666666666666666532 24677788999999999985443 32 1233 356
Q ss_pred eEEEEeCCC
Q 022170 81 QLLIDSSTI 89 (301)
Q Consensus 81 ~ivid~st~ 89 (301)
.++||....
T Consensus 222 avVIDVGin 230 (283)
T COG0190 222 AVVIDVGIN 230 (283)
T ss_pred CEEEecCCc
Confidence 899998753
No 261
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=91.50 E-value=0.27 Score=45.26 Aligned_cols=57 Identities=26% Similarity=0.350 Sum_probs=42.6
Q ss_pred CcHHHHHHHHhCC-C-eEEEEcCChhhHHHHHhC--C-------CCC--CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG-Y-KMAVHDVNCNVMKMFSDM--G-------VPT--KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G-~-~V~~~dr~~~~~~~l~~~--g-------~~~--~~s~~e~~~~adiVi~~vp~~ 57 (301)
||+.+++.|++.+ + +|++.||+.++++++.+. + +.+ ..++.+.++++|+||.|+|..
T Consensus 9 vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 9 VGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp HHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred HHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 5899999999887 4 899999999999888752 1 111 123567788999999999854
No 262
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.49 E-value=0.35 Score=42.71 Aligned_cols=57 Identities=7% Similarity=0.037 Sum_probs=37.7
Q ss_pred CcHHHHHHHHhCCCe-EEEEcCCh---hhHHHHHhC----C--CCC--C--C---CHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYK-MAVHDVNC---NVMKMFSDM----G--VPT--K--E---TPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~-V~~~dr~~---~~~~~l~~~----g--~~~--~--~---s~~e~~~~adiVi~~vp~~ 57 (301)
.|.+++..|++.|.+ |++++|++ ++.+++.+. + ... . + +..+.++.+|+||-|+|-.
T Consensus 137 agrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~G 210 (289)
T PRK12548 137 AATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVG 210 (289)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCC
Confidence 367888999999986 99999997 566554431 1 111 1 1 2233456789999998843
No 263
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.25 E-value=0.97 Score=43.11 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=39.6
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC-CC--------------------------HHHHHhcCCEEEEec
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ET--------------------------PFEVAEASDVVITML 54 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s--------------------------~~e~~~~adiVi~~v 54 (301)
|...+..+...|..|+++|+++++.+.+...|.... -+ ..+.++++|+||.|+
T Consensus 176 Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~Ta 255 (511)
T TIGR00561 176 GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTA 255 (511)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 556667777789899999999999888877765430 01 334567899999999
No 264
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.22 E-value=0.3 Score=39.76 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=41.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
|+.++.-..+.||+|+.+-||++++...... .+---+++.+.+.+-|+||.+....
T Consensus 13 Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 13 GSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred HHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 7788888999999999999999998664211 1212234557788899999988644
No 265
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=91.08 E-value=0.42 Score=42.46 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=41.9
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHHhC--------C-CCC--CCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G-VPT--KETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~--------g-~~~--~~s~~e~~~~adiVi~~vp~~~ 58 (301)
+|.++|..|+..| ++++++|+++++++..+.. . .+. .++ .+.+++||+||++...+.
T Consensus 9 VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 9 VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR 78 (300)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence 4889999999988 6899999999877554432 0 111 233 467899999999998653
No 266
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=90.84 E-value=0.4 Score=42.80 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=40.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHH---HHhC------------CCCCCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM---FSDM------------GVPTKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~---l~~~------------g~~~~~s~~e~~~~adiVi~~v 54 (301)
+|+.+...|+++||.|.+--|+++.-+. +.+. .+....+..+++++||.||=+-
T Consensus 18 Igswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~A 86 (327)
T KOG1502|consen 18 IGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTA 86 (327)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeC
Confidence 4789999999999999999888886322 3222 1334468889999999999643
No 267
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=90.82 E-value=1.1 Score=39.48 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=59.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
|..+-.++...|++ .+|..||.+ .+.+ .|.+...|+.|+-+. .|++++++|.+. +.+++.+ .... .
T Consensus 19 ~~~~~~~~~~~g~~-~v~~V~p~~~~~~v--~G~~~y~sv~dlp~~~~~Dlavi~vpa~~--v~~~l~e---~~~~---G 87 (286)
T TIGR01019 19 GSFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFDSVKEAVEETGANASVIFVPAPF--AADAIFE---AIDA---G 87 (286)
T ss_pred HHHHHHHHHhCCCC-EEEEECCCCCccee--cCeeccCCHHHHhhccCCCEEEEecCHHH--HHHHHHH---HHHC---C
Confidence 56677788888998 777777763 2222 478889999998876 799999999543 5666643 2221 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
-+..+|-+++......+++.+..++
T Consensus 88 vk~avIis~Gf~e~~~~~l~~~a~~ 112 (286)
T TIGR01019 88 IELIVCITEGIPVHDMLKVKRYMEE 112 (286)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Confidence 1246666677655544566665544
No 268
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.81 E-value=0.96 Score=39.97 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=27.4
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.++++.+++||+||.+++-+.- +.. .++ .+|.++||.+.
T Consensus 198 ~~l~~~~~~ADIvI~Avg~~~l-i~~------~~v-----k~GavVIDVgi 236 (295)
T PRK14174 198 KDIPSYTRQADILIAAIGKARF-ITA------DMV-----KPGAVVIDVGI 236 (295)
T ss_pred hhHHHHHHhCCEEEEecCccCc-cCH------HHc-----CCCCEEEEeec
Confidence 3578889999999999985432 221 233 36789999874
No 269
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.67 E-value=1.1 Score=39.56 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=28.3
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 89 (301)
.++++.+++||+||.++.-+.- +.. .++ .+|.++||.+..
T Consensus 196 ~~l~~~~~~ADIvIsAvGkp~~-i~~------~~i-----k~gaiVIDvGin 235 (297)
T PRK14167 196 DDLAAKTRRADIVVAAAGVPEL-IDG------SML-----SEGATVIDVGIN 235 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCCEEEEcccc
Confidence 4678889999999999985442 222 123 367899998753
No 270
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=90.57 E-value=1.4 Score=38.18 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=60.3
Q ss_pred CcHHHHHHHHhCC---CeE-EEEcCChhhHHHHHhCCCCCCCCHHHH-HhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAG---YKM-AVHDVNCNVMKMFSDMGVPTKETPFEV-AEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G---~~V-~~~dr~~~~~~~l~~~g~~~~~s~~e~-~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||..++..|.+.+ +++ .+|+|++++.+.+... ..+++++++. ...+|+|+-|-+ +.+ +++.... +++
T Consensus 13 IG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~a-v~e~~~~---iL~-- 84 (267)
T PRK13301 13 IASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQA-IAEHAEG---CLT-- 84 (267)
T ss_pred HHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHH-HHHHHHH---HHh--
Confidence 5777788776532 453 4689999888888765 7788899996 688999999988 455 7777643 553
Q ss_pred CCCCCeEEEEeCC---CCHHHHHHHHHHHh
Q 022170 76 NSVRPQLLIDSST---IDPQTSRNISAAVS 102 (301)
Q Consensus 76 ~~~~~~ivid~st---~~p~~~~~~~~~~~ 102 (301)
.|+-++-+|. .++..-+++.+...
T Consensus 85 ---~g~dlvv~SvGALaD~~~~~~l~~~A~ 111 (267)
T PRK13301 85 ---AGLDMIICSAGALADDALRARLIAAAE 111 (267)
T ss_pred ---cCCCEEEEChhHhcCHHHHHHHHHHHH
Confidence 2333443443 24455555555544
No 271
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.49 E-value=1.5 Score=36.53 Aligned_cols=58 Identities=17% Similarity=0.096 Sum_probs=38.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChh-hHHHHHhCC-CCCCC-CH-HHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPTKE-TP-FEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~-s~-~e~~~~adiVi~~vp~~~ 58 (301)
||...++.|.+.|++|++++++.. .+..+...+ +.... .. .+.+.++|+||.|+.++.
T Consensus 21 va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 21 VAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 456778889999999999987643 334554443 22111 11 234678999999998764
No 272
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.22 E-value=0.46 Score=38.26 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=49.6
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC--------------------------CHHHHHhcCCEEEEecC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--------------------------TPFEVAEASDVVITMLP 55 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--------------------------s~~e~~~~adiVi~~vp 55 (301)
|..-+..|...|++|+++|.++++.+.+...+..... .+.+.++.+|+||.+.-
T Consensus 32 g~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~vI~~~~ 111 (168)
T PF01262_consen 32 GQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFIAPADIVIGNGL 111 (168)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHHHH-SEEEEHHH
T ss_pred HHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHHhhCcEEeeecc
Confidence 5566777888999999999999988877766432211 23456778999997443
Q ss_pred -CCccchhhhhcCCCccccCCCCCCCeEEEEeC
Q 022170 56 -SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS 87 (301)
Q Consensus 56 -~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s 87 (301)
+... ...++.. ..++. ..++.+|+|.|
T Consensus 112 ~~~~~-~P~lvt~--~~~~~--m~~gsvIvDis 139 (168)
T PF01262_consen 112 YWGKR-APRLVTE--EMVKS--MKPGSVIVDIS 139 (168)
T ss_dssp BTTSS----SBEH--HHHHT--SSTTEEEEETT
T ss_pred cCCCC-CCEEEEh--HHhhc--cCCCceEEEEE
Confidence 2322 3333322 12332 34788999987
No 273
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.95 E-value=0.48 Score=42.02 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCC
Q 022170 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 4 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
-++..|.+.||+|.++.-+.+. ....|+...++.+++++++|+|+..+|.
T Consensus 16 ~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 16 ELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred HHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCcc
Confidence 4788999999999987654321 2234888888889999999999999885
No 274
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.64 E-value=0.48 Score=44.53 Aligned_cols=58 Identities=16% Similarity=0.262 Sum_probs=42.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--CCCC-C---CCHH---H-HHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--GVPT-K---ETPF---E-VAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--g~~~-~---~s~~---e-~~~~adiVi~~vp~~~ 58 (301)
+|..+++.|.+.|++|++.|+++++.+.+.+. +... . .+.+ + .++++|.|+++.+++.
T Consensus 242 ~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 242 IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 37889999999999999999999999888764 2221 1 1222 2 1357899988888654
No 275
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=89.55 E-value=0.43 Score=41.46 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=29.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|..+|+.|+++||+|++..|+.++.+++.++
T Consensus 18 IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 18 IGAELAKQLARRGYNLILVARREDKLEALAKE 49 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH
Confidence 58899999999999999999999999888754
No 276
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=89.54 E-value=0.55 Score=45.33 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=26.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.||+|.+++|+.++.+.+.
T Consensus 92 IG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 92 VGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 588999999999999999999998876554
No 277
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=89.53 E-value=0.51 Score=42.78 Aligned_cols=79 Identities=23% Similarity=0.208 Sum_probs=45.4
Q ss_pred CcHHHHHHHHhC-CCeEEE-EcCChhhHHHHHhC-----CC--CCCCCHHH-HHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMKA-GYKMAV-HDVNCNVMKMFSDM-----GV--PTKETPFE-VAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~-~dr~~~~~~~l~~~-----g~--~~~~s~~e-~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
+|..+++.|.++ ++++.. .+|+ +..+.+.+. +. ....+..+ ...++|+||+|+|+.. ..++...
T Consensus 14 vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~--~~~~v~~--- 87 (343)
T PRK00436 14 TGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV--SMDLAPQ--- 87 (343)
T ss_pred HHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH--HHHHHHH---
Confidence 477788888876 567654 5543 222222211 11 01222222 4568999999999765 4555432
Q ss_pred cccCCCCCCCeEEEEeCCCC
Q 022170 71 LLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~ 90 (301)
++ ..|+.|||.|+-.
T Consensus 88 a~-----~aG~~VID~S~~f 102 (343)
T PRK00436 88 LL-----EAGVKVIDLSADF 102 (343)
T ss_pred HH-----hCCCEEEECCccc
Confidence 22 2468999999754
No 278
>PRK06182 short chain dehydrogenase; Validated
Probab=89.37 E-value=0.8 Score=39.70 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++++.|++.||+|++.+|++++.+.+.+
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 15 IGKATARRLAAQGYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 5899999999999999999999988766644
No 279
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=88.94 E-value=0.58 Score=41.13 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=51.1
Q ss_pred cHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC----CCC-CCCCHHHH--HhcCCEEEEecCCCccchhh---hhcCCCc
Q 022170 2 GFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM----GVP-TKETPFEV--AEASDVVITMLPSSSHQVLD---VYNGPNG 70 (301)
Q Consensus 2 G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~----g~~-~~~s~~e~--~~~adiVi~~vp~~~~~~~~---v~~~~~~ 70 (301)
+.+++..|++.| .+|+++||+.++.+++.+. +.. ......+. ...+|+||=|+|-.-. -.. .+. ..
T Consensus 138 arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~-~~~~~~~~~--~~ 214 (283)
T COG0169 138 ARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMA-GPEGDSPVP--AE 214 (283)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCC-CCCCCCCCc--HH
Confidence 578889999999 5799999999999888764 211 11122211 2258999999996543 221 111 11
Q ss_pred cccCCCCCCCeEEEEeCCCCH
Q 022170 71 LLQGGNSVRPQLLIDSSTIDP 91 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~p 91 (301)
++ .+..++.|+=-...
T Consensus 215 ~l-----~~~~~v~D~vY~P~ 230 (283)
T COG0169 215 LL-----PKGAIVYDVVYNPL 230 (283)
T ss_pred hc-----CcCCEEEEeccCCC
Confidence 22 35578888865443
No 280
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.68 E-value=4.8 Score=36.14 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=56.9
Q ss_pred CCCeEE-EEcCChhhHHHHHhC-C---CCCCCCHHHHHhcC--CEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEE
Q 022170 12 AGYKMA-VHDVNCNVMKMFSDM-G---VPTKETPFEVAEAS--DVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI 84 (301)
Q Consensus 12 ~G~~V~-~~dr~~~~~~~l~~~-g---~~~~~s~~e~~~~a--diVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivi 84 (301)
.+|+|+ +++|+.+++..+++. + .++.+|.+|++++. |+|.+..|+++. .+++- .++. .++.+++
T Consensus 31 s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH--~evv~---l~l~----~~K~VL~ 101 (351)
T KOG2741|consen 31 SNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH--YEVVM---LALN----KGKHVLC 101 (351)
T ss_pred cCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH--HHHHH---HHHH----cCCcEEe
Confidence 467765 679999999888775 3 46778999999865 999999998875 34431 1222 1223555
Q ss_pred Ee-CCCCHHHHHHHHHHHhh
Q 022170 85 DS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 85 d~-st~~p~~~~~~~~~~~~ 103 (301)
+- -.......+++.+..+.
T Consensus 102 EKPla~n~~e~~~iveaA~~ 121 (351)
T KOG2741|consen 102 EKPLAMNVAEAEEIVEAAEA 121 (351)
T ss_pred cccccCCHHHHHHHHHHHHH
Confidence 44 24567778888887765
No 281
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.62 E-value=0.62 Score=41.82 Aligned_cols=54 Identities=24% Similarity=0.242 Sum_probs=38.4
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHH--HH---Hh---CC----CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMK--MF---SD---MG----VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~--~l---~~---~g----~~~~~s~~e~~~~adiVi~~vp 55 (301)
||.++|..++..|+ +|.++|+++++.. .+ .. .+ +..+++. +++++||+||++..
T Consensus 17 vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~tag 83 (321)
T PTZ00082 17 IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTAG 83 (321)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECCC
Confidence 68999999999996 8999999998542 11 11 11 2223455 57799999999774
No 282
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=88.60 E-value=0.53 Score=41.04 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=37.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC--CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~--~~s~~e~~~~adiVi~~vp 55 (301)
+|+.+++.|.+.||+|++.+|++.+.+.+...+... .....+.+.++|+||-|..
T Consensus 10 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 10 IGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred hhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 489999999999999999999887654332111111 1234455667888887775
No 283
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=88.50 E-value=0.56 Score=35.58 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=28.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 35 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~ 35 (301)
+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~ 36 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD 36 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc
Confidence 36666777777899999999999999988887743
No 284
>PRK14982 acyl-ACP reductase; Provisional
Probab=88.43 E-value=0.92 Score=40.97 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=52.0
Q ss_pred CcHHHHHHHHhC-C-CeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~-G-~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||+.+++.|.++ | .+|++++|++++...+.+. +-....++.+++.++|+|+.+...+. .+....+ .+
T Consensus 167 IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~----~~~I~~~-~l----- 236 (340)
T PRK14982 167 IGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK----GVEIDPE-TL----- 236 (340)
T ss_pred HHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc----CCcCCHH-Hh-----
Confidence 688999999854 5 6899999999888877654 11122367788899999998876432 2111111 11
Q ss_pred CCCeEEEEeC
Q 022170 78 VRPQLLIDSS 87 (301)
Q Consensus 78 ~~~~ivid~s 87 (301)
.++.+++|.+
T Consensus 237 ~~~~~viDiA 246 (340)
T PRK14982 237 KKPCLMIDGG 246 (340)
T ss_pred CCCeEEEEec
Confidence 3567899976
No 285
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=88.36 E-value=1.5 Score=39.50 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=40.3
Q ss_pred HHHHHHh-CCCeEEEEcCChhhHHHHHhCCCCCCC-----CHHHHH-hcCCEEEEecCCCccchhhhh
Q 022170 5 MASNLMK-AGYKMAVHDVNCNVMKMFSDMGVPTKE-----TPFEVA-EASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 5 lA~~L~~-~G~~V~~~dr~~~~~~~l~~~g~~~~~-----s~~e~~-~~adiVi~~vp~~~~~~~~v~ 65 (301)
||.-+++ .|.+|+.+||+++|.+.+.+.|+...- +..+.+ +.+|+|+.+++ +.. +.+.+
T Consensus 181 ~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~-~~~~l 246 (339)
T COG1064 181 MAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PAT-LEPSL 246 (339)
T ss_pred HHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhh-HHHHH
Confidence 4555665 799999999999999988888754321 122222 23888888888 655 55544
No 286
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=88.35 E-value=1.5 Score=45.52 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=56.5
Q ss_pred CcHHHHHHHHhCC-Ce-------------EEEEcCChhhHHHHHhC--CC---CC-CCCHHHHH---hcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG-YK-------------MAVHDVNCNVMKMFSDM--GV---PT-KETPFEVA---EASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~-------------V~~~dr~~~~~~~l~~~--g~---~~-~~s~~e~~---~~adiVi~~vp~~ 57 (301)
||...+..|++.. ++ |++.|++++.++.+.+. ++ .. +.+.+++. +++|+|++|+|..
T Consensus 580 VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~ 659 (1042)
T PLN02819 580 VCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVDVVISLLPAS 659 (1042)
T ss_pred HHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCCEEEECCCch
Confidence 6888999998753 33 88999999998887653 31 22 34555543 6799999999975
Q ss_pred ccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 58 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 58 ~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.. ..++.. .++ .|+-+++.| .....++++.+...+
T Consensus 660 ~H--~~VAka---Aie-----aGkHvv~ek-y~~~e~~~L~e~Ak~ 694 (1042)
T PLN02819 660 CH--AVVAKA---CIE-----LKKHLVTAS-YVSEEMSALDSKAKE 694 (1042)
T ss_pred hh--HHHHHH---HHH-----cCCCEEECc-CCHHHHHHHHHHHHH
Confidence 42 333321 121 234556555 333445555555543
No 287
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=88.13 E-value=0.6 Score=41.12 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=29.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.+.|.-|+++|++|.+..|+++|.++.+++
T Consensus 61 IGKayA~eLAkrG~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 61 IGKAYARELAKRGFNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred chHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 58999999999999999999999999888764
No 288
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=87.75 E-value=0.63 Score=41.32 Aligned_cols=55 Identities=9% Similarity=0.106 Sum_probs=38.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-------CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adiVi~~vp 55 (301)
+|..++..|++.||+|++.+|+++....+...++.. ..++.++++.+|+||-+..
T Consensus 12 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 12 VGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred hhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 589999999999999999999877654443223221 1234556677888887764
No 289
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.64 E-value=0.87 Score=42.46 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=37.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|+.|.+.|++|+++|++++.........-...........++|+||.+.+.+
T Consensus 14 ~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 14 TGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 578899999999999999998876443211000011223334446789999887644
No 290
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=87.58 E-value=0.68 Score=40.44 Aligned_cols=56 Identities=16% Similarity=0.018 Sum_probs=38.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC----CCCCCCHHHHH------hc-CCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG----VPTKETPFEVA------EA-SDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g----~~~~~s~~e~~------~~-adiVi~~vp~ 56 (301)
+|+.++..|.+.||+|.+..|++++.....-.. ..-.+++.+++ .. +|.|+.+.|.
T Consensus 11 iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 11 TASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 488999999999999999999987653211011 11123455555 45 8999988874
No 291
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.26 E-value=1.5 Score=41.45 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=37.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEE
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 52 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~ 52 (301)
|.+.|..|.+.|++|+++|+.+.....+.+.|+.......+.+.++|+||.
T Consensus 21 G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~ 71 (460)
T PRK01390 21 GLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVL 71 (460)
T ss_pred HHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEE
Confidence 667789999999999999987665555666677654322334567898886
No 292
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=87.26 E-value=1.8 Score=40.98 Aligned_cols=83 Identities=8% Similarity=0.121 Sum_probs=52.5
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHH--HHh--------------------CCCCCCCCHHHHHhcCCEEEEecCCCccc
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKM--FSD--------------------MGVPTKETPFEVAEASDVVITMLPSSSHQ 60 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~--l~~--------------------~g~~~~~s~~e~~~~adiVi~~vp~~~~~ 60 (301)
..++..|.+.|.+|.+||---+..+. ... .++..+.++.++++++|+|++++.++.
T Consensus 347 ~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~e-- 424 (473)
T PLN02353 347 IDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGICILTEWDE-- 424 (473)
T ss_pred HHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeCCHHHHhcCCCEEEECCCChH--
Confidence 46888999999999999965322111 110 023556677889999999999999765
Q ss_pred hhhhhcCCCccccCCCCCCCeEEEEeCCCCH
Q 022170 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 91 (301)
Q Consensus 61 ~~~v~~~~~~~l~~~~~~~~~ivid~st~~p 91 (301)
.+..- ...+.+. ..+.++|+|+.++..
T Consensus 425 f~~l~--~~~~~~~--m~~~~~viD~rn~l~ 451 (473)
T PLN02353 425 FKTLD--YQKIYDN--MQKPAFVFDGRNVLD 451 (473)
T ss_pred hcccC--HHHHHHh--ccCCCEEEECCCCCC
Confidence 44431 0111111 112348999988764
No 293
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.22 E-value=1.7 Score=41.46 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=27.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 35 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~ 35 (301)
|..-+..+...|.+|+++|+++++.+...+.|++
T Consensus 177 GL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 177 GLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 4455555667799999999999999998888876
No 294
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=86.96 E-value=0.92 Score=41.74 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=47.0
Q ss_pred cHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCC-------CCCCCCHH-HHHhcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 2 GFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VPTKETPF-EVAEASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 2 G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~-e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
|..|.+.|.++ .++|+.+.++++.-+.+.... .....+.+ +.++++|+||+|+|+.. ..++... +
T Consensus 51 G~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~--s~~i~~~----~ 124 (381)
T PLN02968 51 GAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT--TQEIIKA----L 124 (381)
T ss_pred HHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH--HHHHHHH----H
Confidence 67788888887 678888766544332222111 11112222 22578999999999754 4565532 2
Q ss_pred cCCCCCCCeEEEEeCCCC
Q 022170 73 QGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~ 90 (301)
+ .+..|||.|+..
T Consensus 125 ~-----~g~~VIDlSs~f 137 (381)
T PLN02968 125 P-----KDLKIVDLSADF 137 (381)
T ss_pred h-----CCCEEEEcCchh
Confidence 1 357899999753
No 295
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.77 E-value=1.3 Score=41.74 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=37.3
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh-----hHHHHHhCCCCCC--CCHHHHHhcCCEEEEe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTK--ETPFEVAEASDVVITM 53 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~--~s~~e~~~~adiVi~~ 53 (301)
|.++|+.|.+.|++|+++|+++. ..+.+.+.|+... ....+.+.++|+||.+
T Consensus 26 G~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S 84 (458)
T PRK01710 26 NIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT 84 (458)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC
Confidence 67889999999999999998753 2245666676553 2223545789999887
No 296
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=86.69 E-value=1.3 Score=38.69 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=37.7
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
+++++..|.+.|. +|+++||++++.+.+.+. +......+ ....+|+||-|+|-
T Consensus 134 arAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~ 188 (272)
T PRK12550 134 AKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPI 188 (272)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCcc
Confidence 5678888998886 599999999999888764 22111111 12458999999984
No 297
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=86.61 E-value=3.9 Score=38.57 Aligned_cols=60 Identities=22% Similarity=0.482 Sum_probs=44.3
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
+|.-+.++|.+.|| +|+..|...+. + .|..+..+++++-...|++++++|... +.+++.+
T Consensus 22 ~g~~~~~~l~~~gf~g~v~~Vnp~~~~---i--~G~~~~~sl~~lp~~~Dlavi~vp~~~--~~~~l~e 83 (447)
T TIGR02717 22 VGYAIMKNLIEGGYKGKIYPVNPKAGE---I--LGVKAYPSVLEIPDPVDLAVIVVPAKY--VPQVVEE 83 (447)
T ss_pred hHHHHHHHHHhCCCCCcEEEECCCCCc---c--CCccccCCHHHCCCCCCEEEEecCHHH--HHHHHHH
Confidence 46778899999998 46555554332 2 478888899998788999999999543 6666654
No 298
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=86.33 E-value=1.5 Score=38.71 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=39.4
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-----CC---CCCC--CHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----GV---PTKE--TPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-----g~---~~~~--s~~e~~~~adiVi~~vp~~ 57 (301)
|++++..|++.|. +|+++||++++.+.+.+. +. ...+ +..+....+|+||=|+|-.
T Consensus 139 arAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~G 205 (283)
T PRK14027 139 GNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCC
Confidence 5788888999886 799999999999888653 11 1111 1233456789999998843
No 299
>PRK05993 short chain dehydrogenase; Provisional
Probab=86.27 E-value=1.1 Score=39.11 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=27.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|..+|+.|++.|++|++.+|++++.+.+.+.
T Consensus 16 iG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 16 IGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 58899999999999999999999888777654
No 300
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.09 E-value=1.8 Score=36.02 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.4
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVN 22 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~ 22 (301)
||+.+|..|++.|+ +++++|.+
T Consensus 32 lGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 32 LGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHHHHHHHHcCCCEEEEECCC
Confidence 68999999999998 69999998
No 301
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=86.08 E-value=2.8 Score=36.53 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=53.8
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCC--hhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVN--CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~--~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..+++.+.+. +.++. +++++ .++.......+...+++++++..+.|+|+.|.|... ..+.... .++
T Consensus 12 iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~--~~e~~~~---aL~--- 83 (265)
T PRK13303 12 IGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAA--LKEHVVP---ILK--- 83 (265)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHH--HHHHHHH---HHH---
Confidence 688888888775 45543 44443 333333333356677888887456999999999653 4555432 332
Q ss_pred CCCCeEEEEeCCC---CHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDSSTI---DPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~st~---~p~~~~~~~~~~~~ 103 (301)
.|+-++..|+. .++...++.+..++
T Consensus 84 --aGk~Vvi~s~~Al~d~~~~~~L~~~A~~ 111 (265)
T PRK13303 84 --AGIDCAVISVGALADEALRERLEQAAEA 111 (265)
T ss_pred --cCCCEEEeChHHhcCHHHHHHHHHHHHH
Confidence 23334434442 45555666665543
No 302
>PRK11579 putative oxidoreductase; Provisional
Probab=85.98 E-value=6.2 Score=35.69 Aligned_cols=87 Identities=18% Similarity=0.292 Sum_probs=53.9
Q ss_pred HHHHHh-CCCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 6 ASNLMK-AGYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 6 A~~L~~-~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+..+.+ .+.++. ++|+++++... +. +....++++++++ +.|+|++|+|+... ..-+.. .++ .+.
T Consensus 21 ~~~~~~~~~~~l~av~d~~~~~~~~--~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H-~~~~~~----al~----aGk 89 (346)
T PRK11579 21 APLIAGTPGLELAAVSSSDATKVKA--DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH-FPLAKA----ALE----AGK 89 (346)
T ss_pred HHHHhhCCCCEEEEEECCCHHHHHh--hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH-HHHHHH----HHH----CCC
Confidence 333443 356765 68999877642 22 4566789999986 57999999997664 333332 222 122
Q ss_pred eEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
.++++- -+.+.++++++.+..++
T Consensus 90 hVl~EKPla~t~~ea~~l~~~a~~ 113 (346)
T PRK11579 90 HVVVDKPFTVTLSQARELDALAKS 113 (346)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHH
Confidence 455553 24566777888776654
No 303
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=85.92 E-value=0.71 Score=36.08 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=38.8
Q ss_pred cHHHHHHHHhCCC--eEEEEcCChhhHHHHHhC----------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 2 GFRMASNLMKAGY--KMAVHDVNCNVMKMFSDM----------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 2 G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~----------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
|.++|..|...+. ++.++|+++++++..... .........+.+++||+|+++...
T Consensus 13 G~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 13 GSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred HHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 7889999988874 799999998876433221 123333556677889999988764
No 304
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=85.86 E-value=1.6 Score=39.33 Aligned_cols=78 Identities=19% Similarity=0.164 Sum_probs=55.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
.|.+.|.+|...|.+|.|++.+|-++-+..=.|..+ .+.++++..+|++|+|+.+. +|+... .+.. .+.+
T Consensus 220 vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V-~~m~~Aa~~gDifiT~TGnk-----dVi~~e--h~~~--MkDg 289 (420)
T COG0499 220 VGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKTGDIFVTATGNK-----DVIRKE--HFEK--MKDG 289 (420)
T ss_pred cchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEE-EEhHHhhhcCCEEEEccCCc-----CccCHH--HHHh--ccCC
Confidence 388999999999999999999987765554457665 46889999999999999843 343321 1211 3456
Q ss_pred eEEEEeCC
Q 022170 81 QLLIDSST 88 (301)
Q Consensus 81 ~ivid~st 88 (301)
.++.+..-
T Consensus 290 aIl~N~GH 297 (420)
T COG0499 290 AILANAGH 297 (420)
T ss_pred eEEecccc
Confidence 67776663
No 305
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=85.73 E-value=0.74 Score=41.75 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=44.2
Q ss_pred cHHHHHHHHhCCCe---EEEE--cCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKAGYK---MAVH--DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~G~~---V~~~--dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|..|.+.|.+++|+ +... .|+..+.-..............+.+.++|+||+|+|... .+++... +.
T Consensus 20 G~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~--s~~~~~~---~~---- 90 (344)
T PLN02383 20 GQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI--SKKFGPI---AV---- 90 (344)
T ss_pred HHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH--HHHHHHH---HH----
Confidence 67788889888885 2222 344333222211111121112245578999999999765 4554421 11
Q ss_pred CCCCeEEEEeCCC
Q 022170 77 SVRPQLLIDSSTI 89 (301)
Q Consensus 77 ~~~~~ivid~st~ 89 (301)
..|..|||.|+.
T Consensus 91 -~~g~~VIDlS~~ 102 (344)
T PLN02383 91 -DKGAVVVDNSSA 102 (344)
T ss_pred -hCCCEEEECCch
Confidence 246799999963
No 306
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=85.69 E-value=0.98 Score=38.51 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=29.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.++|+.|+++|++|.+..|+.++++.++..
T Consensus 18 iG~A~A~~l~~~G~~vvl~aRR~drL~~la~~ 49 (246)
T COG4221 18 IGEATARALAEAGAKVVLAARREERLEALADE 49 (246)
T ss_pred HHHHHHHHHHHCCCeEEEEeccHHHHHHHHHh
Confidence 48899999999999999999999999988764
No 307
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=85.55 E-value=3.3 Score=37.07 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=66.9
Q ss_pred CcHHHHHHHHhCCCeEEEEc-CChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHD-VNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~d-r~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
+|+-+|.++...|-.|+.|| ..+.+ ...+.|++. .+++|++..||+|-+=+|-.++ .+.++... -++. +++
T Consensus 157 IGseVA~r~k~~gm~vI~~dpi~~~~--~~~a~gvq~-vsl~Eil~~ADFitlH~PLtP~-T~~lin~~--tfA~--mKk 228 (406)
T KOG0068|consen 157 IGSEVAVRAKAMGMHVIGYDPITPMA--LAEAFGVQL-VSLEEILPKADFITLHVPLTPS-TEKLLNDE--TFAK--MKK 228 (406)
T ss_pred chHHHHHHHHhcCceEEeecCCCchH--HHHhcccee-eeHHHHHhhcCEEEEccCCCcc-hhhccCHH--HHHH--hhC
Confidence 58889999998888888887 44443 344457765 5899999999999999997666 77776542 2332 568
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~ 102 (301)
|..+|++|-...-....+.+.+.
T Consensus 229 GVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 229 GVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred CcEEEEecCCceechHHHHHHHh
Confidence 89999998654444445555554
No 308
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.28 E-value=1.9 Score=41.06 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=40.1
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC--CHHHHHhcCCEEEEecCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--TPFEVAEASDVVITMLPS 56 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--s~~e~~~~adiVi~~vp~ 56 (301)
|.+.++.|.+.|++|+++|+++...+.+.+.|+.... ...+.+.++|+||.+-.-
T Consensus 24 G~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi 80 (488)
T PRK03369 24 GRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGF 80 (488)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCC
Confidence 6677777889999999999887776666666765432 334556789999886543
No 309
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=85.07 E-value=3.6 Score=32.72 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=53.3
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC-CCC-CCCHH-HHHhcCCEEEEecCCCccchhhhhcCC---Cc-----
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-VPT-KETPF-EVAEASDVVITMLPSSSHQVLDVYNGP---NG----- 70 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g-~~~-~~s~~-e~~~~adiVi~~vp~~~~~~~~v~~~~---~~----- 70 (301)
|...++.|.+.|++|++++ ++..+.+.+.+ +.. ...+. +-++++|+||.++.++. +...+... ..
T Consensus 25 a~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e--~N~~i~~~a~~~~~vn~~ 100 (157)
T PRK06719 25 AYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA--VNMMVKQAAHDFQWVNVV 100 (157)
T ss_pred HHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH--HHHHHHHHHHHCCcEEEC
Confidence 4556788889999999995 44444554432 111 11122 23578999999988654 22222110 00
Q ss_pred --------cccCCCCCCC--eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 71 --------LLQGGNSVRP--QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 71 --------~l~~~~~~~~--~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+.+.. ...+ .+-|-+++.+|..++++-+.+++
T Consensus 101 d~~~~~~f~~pa~-v~~~~l~iaisT~G~sP~la~~lr~~ie~ 142 (157)
T PRK06719 101 SDGTESSFHTPGV-IRNDEYVVTISTSGKDPSFTKRLKQELTS 142 (157)
T ss_pred CCCCcCcEEeeeE-EEECCeEEEEECCCcChHHHHHHHHHHHH
Confidence 11100 0122 23344456799999888877764
No 310
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=85.05 E-value=2.2 Score=39.66 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
..++..|.+.|.+|.+||..-.... .. ......++.++++++|+|++++.++.
T Consensus 336 ~~~~~~L~~~g~~v~~~DP~~~~~~-~~--~~~~~~~~~~~~~~ad~~v~~t~~~~ 388 (411)
T TIGR03026 336 LDIIELLKEKGAKVKAYDPLVPEEE-VK--GLPLIDDLEEALKGADALVILTDHDE 388 (411)
T ss_pred HHHHHHHHhCCCEEEEECCCCChhh-hh--hcccCCCHHHHHhCCCEEEEecCCHH
Confidence 4678899999999999996533221 11 12235788899999999999999765
No 311
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=84.94 E-value=1.5 Score=32.84 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=40.1
Q ss_pred CcHHHHHHHHhC----CCeEE-EEcCC--hhhHHHHHhCCCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKA----GYKMA-VHDVN--CNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~----G~~V~-~~dr~--~~~~~~l~~~g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~ 66 (301)
||+.++..|.+. +++|. +++|+ .+........+...+.++++.++ ..|+|+-|.+ +.. +.+.+.
T Consensus 5 VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~-~~~-~~~~~~ 77 (117)
T PF03447_consen 5 VGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTS-SEA-VAEYYE 77 (117)
T ss_dssp HHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SS-CHH-HHHHHH
T ss_pred HHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCC-chH-HHHHHH
Confidence 588999999876 45654 66888 11111122234567788998888 8999999965 343 566553
No 312
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=84.66 E-value=0.72 Score=37.75 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=30.5
Q ss_pred CeEEEEcCChhhHHHHHh--------CC----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 14 YKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
-++..+|+|+++.+.... .| +..++|.+|++++||+||.++.-.
T Consensus 29 ~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 29 SEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQIRVG 84 (183)
T ss_dssp EEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE---TT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEEeeec
Confidence 378899999998764322 23 344789999999999999998855
No 313
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=84.57 E-value=2 Score=36.80 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=24.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|+.++..|+++||+|++..|++++....
T Consensus 29 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 29 TGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 48899999999999999999998876544
No 314
>PRK08177 short chain dehydrogenase; Provisional
Probab=84.49 E-value=2.1 Score=35.86 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (225)
T PRK08177 13 LGLGLVDRLLERGWQVTATVRGPQQDTALQ 42 (225)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCcchHHHH
Confidence 588999999999999999999988765554
No 315
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=84.46 E-value=2.2 Score=38.28 Aligned_cols=79 Identities=23% Similarity=0.240 Sum_probs=42.6
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-----C---CCCC-CCHHHH-HhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----G---VPTK-ETPFEV-AEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-----g---~~~~-~s~~e~-~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
|.-|.+.|..+.+ ++..+..+..+=..+.+. | .... .+.++. .++||+||+|+|+... .+.+..
T Consensus 15 G~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~s--~~~v~~--- 89 (349)
T COG0002 15 GLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGVS--AELVPE--- 89 (349)
T ss_pred HHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchhH--HHHHHH---
Confidence 5667777776653 655554333221222221 2 1111 233443 3459999999998764 444422
Q ss_pred cccCCCCCCCeEEEEeCCCC
Q 022170 71 LLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~ 90 (301)
++ .++..|||+|+-.
T Consensus 90 l~-----~~g~~VIDLSadf 104 (349)
T COG0002 90 LL-----EAGCKVIDLSADF 104 (349)
T ss_pred HH-----hCCCeEEECCccc
Confidence 22 2345699999853
No 316
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.33 E-value=2.1 Score=40.23 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=39.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh-hhH----HHHHhCCCCC--CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC-NVM----KMFSDMGVPT--KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~-~~~----~~l~~~g~~~--~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..|++.|++|+++|++. +.. +.+.+.|+.. .....+....+|+||.+...+
T Consensus 16 ~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 16 SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCC
Confidence 37899999999999999999875 333 3344445443 223334556799999986643
No 317
>PRK05866 short chain dehydrogenase; Provisional
Probab=84.32 E-value=2 Score=37.88 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+|+.|+++|++|++.+|++++.+.+.+
T Consensus 52 IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 52 IGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4889999999999999999999887766543
No 318
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=84.07 E-value=1.4 Score=38.96 Aligned_cols=50 Identities=20% Similarity=0.130 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCC
Q 022170 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 4 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
-+++.|.+.|++|.+|.-.... ..+ .|+....+.+++++++|+||+++|-
T Consensus 15 ~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~~ 64 (287)
T TIGR02853 15 ELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVPG 64 (287)
T ss_pred HHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCcc
Confidence 4789999999999988754210 112 2667777888889999999999994
No 319
>PRK05693 short chain dehydrogenase; Provisional
Probab=84.02 E-value=1.6 Score=37.78 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=26.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (274)
T PRK05693 13 IGRALADAFKAAGYEVWATARKAEDVEALAA 43 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999887766544
No 320
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=83.87 E-value=1.5 Score=36.50 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=29.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.++|++|.+.|.+|++..|+.++.+...+.
T Consensus 17 IGl~lak~f~elgN~VIi~gR~e~~L~e~~~~ 48 (245)
T COG3967 17 IGLALAKRFLELGNTVIICGRNEERLAEAKAE 48 (245)
T ss_pred hhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc
Confidence 58999999999999999999999998887765
No 321
>PLN02780 ketoreductase/ oxidoreductase
Probab=83.70 E-value=1.2 Score=39.92 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=27.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|..|++.|++|.+++|++++.+.+.+
T Consensus 65 IG~alA~~La~~G~~Vil~~R~~~~l~~~~~ 95 (320)
T PLN02780 65 IGKGFAFQLARKGLNLVLVARNPDKLKDVSD 95 (320)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988766543
No 322
>PRK10206 putative oxidoreductase; Provisional
Probab=83.67 E-value=6.3 Score=35.72 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=51.5
Q ss_pred CCeEE-EEcCChhhHHHHHhCC-CCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeC-
Q 022170 13 GYKMA-VHDVNCNVMKMFSDMG-VPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS- 87 (301)
Q Consensus 13 G~~V~-~~dr~~~~~~~l~~~g-~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s- 87 (301)
+++|. ++|+++++.+...+.+ ....+|.+++++ +.|+|++|+|+... .+-+.. .++. +..++++--
T Consensus 27 ~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H-~~~~~~----al~a----GkhVl~EKPl 97 (344)
T PRK10206 27 SWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH-FEYAKR----ALEA----GKNVLVEKPF 97 (344)
T ss_pred CEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH-HHHHHH----HHHc----CCcEEEecCC
Confidence 46665 6899987653333344 567789999985 57999999997754 333322 2221 223555532
Q ss_pred CCCHHHHHHHHHHHhh
Q 022170 88 TIDPQTSRNISAAVSN 103 (301)
Q Consensus 88 t~~p~~~~~~~~~~~~ 103 (301)
+.+..+++++.+..++
T Consensus 98 a~~~~ea~~l~~~a~~ 113 (344)
T PRK10206 98 TPTLAEAKELFALAKS 113 (344)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4466777888777654
No 323
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=83.61 E-value=2 Score=36.57 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
.|..++..|.+.|++|++.+|++++.+.+.+
T Consensus 12 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 12 FGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3789999999999999999999887766543
No 324
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=83.55 E-value=4.9 Score=30.31 Aligned_cols=85 Identities=14% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCC--HHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH
Q 022170 180 MAVSMLGVSEALTLGQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA 257 (301)
Q Consensus 180 ~~~~~~~~~E~~~l~~~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a 257 (301)
.......+.|+..++++.|++ .+.+.+.+.......+ .. .+.+. +|+..+- -.+.--=...+++.+
T Consensus 37 ~~~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~--~~---~~SM~------~D~~~gr-~tEid~i~G~vv~~a 104 (125)
T PF08546_consen 37 RELIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTP--DN---RSSML------QDIEAGR-PTEIDYINGYVVRLA 104 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTT--TT-----HHH------HHHHTTB---SHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC--Cc---cccHH------HHHHHcc-cccHHHHHHHHHHHH
Confidence 344557889999999999964 4333333322110000 00 00011 1121111 112223357899999
Q ss_pred HHcCCCchHHHHHHHHHHH
Q 022170 258 KEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 258 ~~~g~~~p~~~~~~~~~~~ 276 (301)
+++|+++|..+.++++.+.
T Consensus 105 ~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 105 KKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp HHTT---HHHHHHHHHHHH
T ss_pred HHHCCCCcHHHHHHHHHHH
Confidence 9999999999999988764
No 325
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=83.41 E-value=0.96 Score=40.85 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=45.3
Q ss_pred cHHHHHHHHhCCCeE---EEEcCChhhHHHHHhCC--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~G~~V---~~~dr~~~~~~~l~~~g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|..+.+.|.++||++ ....++++.-+.+.-.+ +...+...+.+.++|+||+|+|... .+++... ++
T Consensus 14 G~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~--s~~~~~~---~~---- 84 (334)
T PRK14874 14 GREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSV--SKKYAPK---AA---- 84 (334)
T ss_pred HHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHH--HHHHHHH---HH----
Confidence 778899999988864 44544433222222112 2222111233478999999999654 4555432 22
Q ss_pred CCCCeEEEEeCCC
Q 022170 77 SVRPQLLIDSSTI 89 (301)
Q Consensus 77 ~~~~~ivid~st~ 89 (301)
..|..|||.|+-
T Consensus 85 -~~G~~VIDlS~~ 96 (334)
T PRK14874 85 -AAGAVVIDNSSA 96 (334)
T ss_pred -hCCCEEEECCch
Confidence 245689999863
No 326
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=83.35 E-value=2.4 Score=37.77 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=41.2
Q ss_pred CcHHHHHHHHhCCC-eEE-EEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGY-KMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
.|.-|.+.|.++.+ ++. +..++. .. ..+.++..+++|++|+|+|+.. ..+.... +. .
T Consensus 13 ~G~el~rlL~~HP~~el~~l~s~~~----------~~-~~~~~~~~~~~D~vFlalp~~~--s~~~~~~---~~-----~ 71 (310)
T TIGR01851 13 TGLQIRERLSGRDDIELLSIAPDRR----------KD-AAERAKLLNAADVAILCLPDDA--AREAVSL---VD-----N 71 (310)
T ss_pred hHHHHHHHHhCCCCeEEEEEecccc----------cC-cCCHhHhhcCCCEEEECCCHHH--HHHHHHH---HH-----h
Confidence 36778888887653 333 223321 11 1245566688999999999765 4554432 11 2
Q ss_pred CCeEEEEeCC
Q 022170 79 RPQLLIDSST 88 (301)
Q Consensus 79 ~~~ivid~st 88 (301)
.|..|||.|+
T Consensus 72 ~g~~VIDlSa 81 (310)
T TIGR01851 72 PNTCIIDAST 81 (310)
T ss_pred CCCEEEECCh
Confidence 4678999996
No 327
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.28 E-value=2.1 Score=40.18 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=37.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh----HHHHHhCCCCCC--CCHHHHHhc-CCEEEEec
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV----MKMFSDMGVPTK--ETPFEVAEA-SDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~----~~~l~~~g~~~~--~s~~e~~~~-adiVi~~v 54 (301)
+|.+.|+.|++.|++|+++|+++.. .+.+.+.|+... ....+.... .|+||.+-
T Consensus 16 ~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 4788999999999999999986532 344656676543 233444444 89888754
No 328
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=83.27 E-value=2.3 Score=40.06 Aligned_cols=52 Identities=27% Similarity=0.468 Sum_probs=36.3
Q ss_pred cHH-HHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCCC-CHHHHHhcCCEEEEe
Q 022170 2 GFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKE-TPFEVAEASDVVITM 53 (301)
Q Consensus 2 G~~-lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~e~~~~adiVi~~ 53 (301)
|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.+.++|+|+.+
T Consensus 11 Gm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 11 GMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVS 65 (448)
T ss_pred HHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEEC
Confidence 454 88999999999999997553 33456666765532 223445679988875
No 329
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=82.96 E-value=2.4 Score=40.05 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=37.0
Q ss_pred cHH-HHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCC-CCHHHHHhcCCEEEEec
Q 022170 2 GFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTK-ETPFEVAEASDVVITML 54 (301)
Q Consensus 2 G~~-lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~-~s~~e~~~~adiVi~~v 54 (301)
|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+... ....+.+.++|+|+.+-
T Consensus 19 G~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 19 GMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred hHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 566 78899999999999997543 3445666676553 22334556799988753
No 330
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=82.86 E-value=3.3 Score=36.48 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=48.9
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhH--HHHHhCCCCC-CCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVM--KMFSDMGVPT-KETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~--~~l~~~g~~~-~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
||+.++..+.+. +.++. ++|+++++. +...+.|+.. .++.+++++ +.|+|++|+|+... .+.... .+
T Consensus 12 IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H--~e~a~~---al- 85 (285)
T TIGR03215 12 IGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH--ARHARL---LA- 85 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH--HHHHHH---HH-
Confidence 356666666643 56655 679988763 3344557654 457787775 57889999997654 333221 12
Q ss_pred CCCCCCCeEEEEeCCCC
Q 022170 74 GGNSVRPQLLIDSSTID 90 (301)
Q Consensus 74 ~~~~~~~~ivid~st~~ 90 (301)
..|+.++|.+...
T Consensus 86 ----~aGk~VIdekPa~ 98 (285)
T TIGR03215 86 ----ELGKIVIDLTPAA 98 (285)
T ss_pred ----HcCCEEEECCccc
Confidence 2456777766543
No 331
>PRK08339 short chain dehydrogenase; Provisional
Probab=82.73 E-value=1.6 Score=37.73 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 20 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (263)
T PRK08339 20 IGFGVARVLARAGADVILLSRNEENLKKAR 49 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766554
No 332
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=82.67 E-value=2.1 Score=38.39 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=39.3
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhC---------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDM---------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~---------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
.|.++|..|+..|. ++.++|++.++++..... ......+.-+.+++||+||++-..
T Consensus 17 vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 17 VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 38899999998887 799999988875433221 122223344668999999998764
No 333
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=82.67 E-value=2.8 Score=38.74 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhh
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 64 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v 64 (301)
..++..|.+.|.+|.+||.--+... ..++..++++.+++++||.|++..-++. ++.+
T Consensus 319 ~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 375 (388)
T PRK15057 319 QGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRMAEE--LKDV 375 (388)
T ss_pred HHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCCcHH--HHhh
Confidence 4688999999999999997533222 3378889999999999999999998765 5654
No 334
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=82.34 E-value=1.3 Score=37.66 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=24.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~ 26 (301)
+|.++|+.|++.|++|++.+|++++.
T Consensus 8 iG~aia~~l~~~Ga~V~~~~~~~~~~ 33 (241)
T PF13561_consen 8 IGRAIARALAEEGANVILTDRNEEKL 33 (241)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSHHHH
T ss_pred hHHHHHHHHHHCCCEEEEEeCChHHH
Confidence 58999999999999999999999874
No 335
>PRK06101 short chain dehydrogenase; Provisional
Probab=82.33 E-value=1.6 Score=37.06 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=27.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|..+++.|++.|++|++.+|++++.+.+.+.
T Consensus 13 iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 13 IGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 48899999999999999999999887776543
No 336
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=82.22 E-value=3.3 Score=36.67 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=35.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHH---HHHhC-----C-------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMK---MFSDM-----G-------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~---~l~~~-----g-------~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|+++||+|.+.+|+++... .+... . +.-..+..++++++|+||-+..
T Consensus 16 IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~ 85 (322)
T PLN02662 16 IASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTAS 85 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeCC
Confidence 489999999999999999888765432 21111 1 1111245566677888877654
No 337
>PLN02650 dihydroflavonol-4-reductase
Probab=82.09 E-value=2.8 Score=37.83 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=36.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----C-----------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G-----------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g-----------~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|++.||+|.+.+|+++..+.+... + +.-..++.++++++|+||-+..
T Consensus 17 IGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A~ 86 (351)
T PLN02650 17 IGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVAT 86 (351)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeCC
Confidence 48999999999999999998887655432210 1 1111244566777888887653
No 338
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=82.00 E-value=2.5 Score=40.72 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=37.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC--CCCHHHH-HhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT--KETPFEV-AEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~--~~s~~e~-~~~adiVi~~vp~ 56 (301)
+|.+++..|++.|++|++++|+.++.+.+.+. +... ..+..+. ...+|+|+-|.|-
T Consensus 390 agrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~v 449 (529)
T PLN02520 390 AGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSV 449 (529)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccC
Confidence 47899999999999999999999998888653 2111 1122221 1346777767663
No 339
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=81.98 E-value=2.5 Score=35.54 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=25.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+++.|+++||+|++.+|++++.+.+
T Consensus 17 iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 17 IGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 48899999999999999999998876544
No 340
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.93 E-value=2.9 Score=34.80 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=23.1
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~ 30 (301)
+|+.+|.+|++.|. +++++|.+.=....+.
T Consensus 32 lGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 32 LGSPAALYLAGAGVGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCEEcccchh
Confidence 48899999999996 8999998754433343
No 341
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=81.90 E-value=2.7 Score=37.52 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=37.1
Q ss_pred CcHHHHHHHHhCCCe--EEEEcCCh--hhHHHH--------HhCCC----CCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYK--MAVHDVNC--NVMKMF--------SDMGV----PTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~--V~~~dr~~--~~~~~l--------~~~g~----~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
.|..++..|+..|+. |+++||++ ++++.. ...+. ...++ .+.+++||+||+|+..+
T Consensus 12 vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViitag~p 83 (309)
T cd05294 12 VGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIITAGVP 83 (309)
T ss_pred HHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEecCCC
Confidence 378899999999874 99999965 433211 11121 12234 45689999999999754
No 342
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.73 E-value=2.7 Score=39.86 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=37.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHH-HhCCCCCCC--CHHHHHhcCCEEEEe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKE--TPFEVAEASDVVITM 53 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l-~~~g~~~~~--s~~e~~~~adiVi~~ 53 (301)
|.++|+.|.+.|++|+++|+++....++ .+.|+.... ...+.+.++|+||.+
T Consensus 27 G~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 27 GRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred HHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 6789999999999999999887665443 344765532 233446678988876
No 343
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=81.61 E-value=3 Score=39.29 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCeEEEEcCChh--hHHHHHhCCCCCC--CCHHHHHhcCCEEEEe
Q 022170 3 FRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK--ETPFEVAEASDVVITM 53 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~g~~~~--~s~~e~~~~adiVi~~ 53 (301)
++||+.|.+.|++|+++|.++. ..+.+.+.|++.. .+......++|+|+.+
T Consensus 13 ~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 67 (448)
T TIGR01081 13 GGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIG 67 (448)
T ss_pred HHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEEC
Confidence 5789999999999999997653 2235666677553 2344444568988874
No 344
>PRK05875 short chain dehydrogenase; Provisional
Probab=81.52 E-value=2.7 Score=36.31 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 19 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 19 IGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 488999999999999999999987765543
No 345
>PRK08862 short chain dehydrogenase; Provisional
Probab=81.40 E-value=2 Score=36.37 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|..|++.|++|.+.+|++++.+++.+
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~l~~~~~ 47 (227)
T PRK08862 17 LGRTISCHFARLGATLILCDQDQSALKDTYE 47 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999988766543
No 346
>PLN02686 cinnamoyl-CoA reductase
Probab=81.38 E-value=2.4 Score=38.71 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=24.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|+.++..|++.||+|.+..|+.+..+.+
T Consensus 65 IG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 65 LGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999888877665444
No 347
>PRK05884 short chain dehydrogenase; Provisional
Probab=81.32 E-value=1.8 Score=36.31 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 12 iG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 12 LGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999888766643
No 348
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.88 E-value=2 Score=36.95 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=26.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 18 IGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887666543
No 349
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=80.58 E-value=2 Score=36.86 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|+.++.+.+.+
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 17 LGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 5899999999999999999999887776654
No 350
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=80.57 E-value=2 Score=36.95 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=27.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 18 IGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999888776654
No 351
>PLN02427 UDP-apiose/xylose synthase
Probab=80.32 E-value=2.6 Score=38.63 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=37.2
Q ss_pred CcHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCC-------CC-------CCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VP-------TKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g-------~~-------~~~s~~e~~~~adiVi~~v 54 (301)
+|+.+++.|+++ ||+|.+.+|++++...+...+ ++ -..++.++++++|+||=+.
T Consensus 26 IGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA 94 (386)
T PLN02427 26 IGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA 94 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence 589999999988 599999999877765554321 11 1123455667789888765
No 352
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=80.31 E-value=3.1 Score=36.73 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=36.2
Q ss_pred cHHHHHHHHhCCC-eEEEEcCCh---hhHHHHHhC-C----CC-CCCCH------HHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNC---NVMKMFSDM-G----VP-TKETP------FEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~---~~~~~l~~~-g----~~-~~~s~------~e~~~~adiVi~~vp~~ 57 (301)
+++++..|+..|. +|+++||++ ++.+.+.+. + .. ...++ .+...++|+||-|+|-.
T Consensus 136 arAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~G 207 (288)
T PRK12749 136 STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVG 207 (288)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCCCC
Confidence 4667777888885 799999995 477766542 1 10 11122 23455789999998843
No 353
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.29 E-value=4.5 Score=32.79 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCCh
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNC 23 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~ 23 (301)
||+.++.+|++.|. +++++|.+.
T Consensus 10 lGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 10 LGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999998 599999876
No 354
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=80.25 E-value=3.4 Score=36.72 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=35.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH---h-CC-----------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS---D-MG-----------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~---~-~g-----------~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|++.||+|++..|+++...... . .+ +.-..+..++++..|+||-+..
T Consensus 17 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~ 86 (325)
T PLN02989 17 IASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHTAS 86 (325)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEeCC
Confidence 489999999999999998888766433221 1 11 1111234455666787777654
No 355
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.14 E-value=3.4 Score=34.82 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=24.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
.|..+++.|++.|++|.+.+|++++.+.+
T Consensus 19 iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~ 47 (239)
T PRK07666 19 IGRAVAIALAKEGVNVGLLARTEENLKAV 47 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 47889999999999999999998766554
No 356
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=79.73 E-value=2.3 Score=36.44 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 12 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 12 IGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988765553
No 357
>PRK06482 short chain dehydrogenase; Provisional
Probab=79.73 E-value=3.3 Score=35.86 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..++..|++.|++|.+.+|+++..+.+.+
T Consensus 14 IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (276)
T PRK06482 14 FGRGMTERLLARGDRVAATVRRPDALDDLKA 44 (276)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5889999999999999999999887776654
No 358
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=79.69 E-value=2.6 Score=37.48 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=39.8
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHH----hC------CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFS----DM------GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~----~~------g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..|+..+. ++.++|++.++++... .. ......+..+.+++||+|+++...+
T Consensus 7 VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~ 75 (299)
T TIGR01771 7 VGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAP 75 (299)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCC
Confidence 48899999988875 6999999887654322 11 1233334467889999999987653
No 359
>PRK05867 short chain dehydrogenase; Provisional
Probab=79.66 E-value=2.2 Score=36.38 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++++.|++.|++|.+.+|++++.+.+.
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 21 IGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999988776554
No 360
>PRK07063 short chain dehydrogenase; Provisional
Probab=79.50 E-value=2.4 Score=36.32 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=26.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 19 IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~ 49 (260)
T PRK07063 19 IGAAIARAFAREGAAVALADLDAALAERAAA 49 (260)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766543
No 361
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=79.50 E-value=4.1 Score=36.17 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=36.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHH---HHh-CC-----------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM---FSD-MG-----------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~---l~~-~g-----------~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|++.||+|.+..|+.++.+. +.. .+ +.-..+..++++++|+||-+-.
T Consensus 17 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 86 (322)
T PLN02986 17 IASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFHTAS 86 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEEeCC
Confidence 4889999999999999987777654332 221 11 1112345566777888887664
No 362
>PRK08017 oxidoreductase; Provisional
Probab=79.41 E-value=2.6 Score=35.89 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=26.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 14 IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 14 IGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 5899999999999999999999887766543
No 363
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=79.34 E-value=4.1 Score=34.94 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=44.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC-------CCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-------PTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~-------~~~~s~~e~~~~adiVi~~vp 55 (301)
.|+.+...|.+.||+|.+..|++++...+. .++ ....++..++++.|.++++.+
T Consensus 12 ~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 12 VGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred hHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 488999999999999999999999998887 433 233466677889999999888
No 364
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=79.26 E-value=4.1 Score=38.03 Aligned_cols=55 Identities=16% Similarity=0.057 Sum_probs=39.2
Q ss_pred HHHHHHHHhCC-CeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 3 FRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 3 ~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
..+++.|.+.| .+|.+||.--.......... ....++.++++++|+|++++++++
T Consensus 343 ~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~-~~~~~~~~~~~~ad~vvi~t~~~~ 398 (415)
T PRK11064 343 MEIAELIAQWHSGETLVVEPNIHQLPKKLDGL-VTLVSLDEALATADVLVMLVDHSQ 398 (415)
T ss_pred HHHHHHHHhcCCcEEEEECCCCCchhhhccCc-eeeCCHHHHHhCCCEEEECCCCHH
Confidence 46889999996 99999996533221111112 234688899999999999999765
No 365
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=78.89 E-value=2.2 Score=37.49 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=36.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH------hCCCCCCCCHHHHHhcC-CEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS------DMGVPTKETPFEVAEAS-DVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~------~~g~~~~~s~~e~~~~a-diVi~~vp~ 56 (301)
+|+.++..|.+.||+|.+.+|++.+..... ...........+..+.. |.||-+...
T Consensus 12 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 12 IGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEcccc
Confidence 489999999999999999999877665432 00111112333444555 888876653
No 366
>PRK07478 short chain dehydrogenase; Provisional
Probab=78.66 E-value=2.6 Score=35.91 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 18 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (254)
T PRK07478 18 IGRAAAKLFAREGAKVVVGARRQAELDQLV 47 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988776554
No 367
>PRK07024 short chain dehydrogenase; Provisional
Probab=78.62 E-value=2.5 Score=36.23 Aligned_cols=31 Identities=13% Similarity=0.350 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..++..|++.|++|++.+|++++.+.+.+
T Consensus 14 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07024 14 IGQALAREYARQGATLGLVARRTDALQAFAA 44 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4899999999999999999999887766544
No 368
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.62 E-value=2.7 Score=35.80 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+|..|++.|++|++.+|+++..+.+.
T Consensus 17 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 17 LGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987765553
No 369
>PRK06180 short chain dehydrogenase; Provisional
Probab=78.57 E-value=2.4 Score=36.86 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 16 iG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 16 FGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred HHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 5899999999999999999999988766654
No 370
>PLN02214 cinnamoyl-CoA reductase
Probab=78.51 E-value=3.4 Score=37.29 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=36.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHH-----HHHhC--C-------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMK-----MFSDM--G-------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~-----~l~~~--g-------~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|+++||+|.+..|+.++.. .+... . +.-..++.++++.+|+||-+..
T Consensus 22 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 90 (342)
T PLN02214 22 IASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTAS 90 (342)
T ss_pred HHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEecC
Confidence 488999999999999999998866421 11110 1 1112244566778898888764
No 371
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=78.33 E-value=1.4 Score=34.75 Aligned_cols=50 Identities=24% Similarity=0.232 Sum_probs=32.6
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecC
Q 022170 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 4 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp 55 (301)
++...|.+.+++|.++|++++....-. +........+++..||+|+++=.
T Consensus 22 P~~~~l~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 22 PLVEKLKERGAEVRVFDLNPDNIGEEP--GDVPDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp CCHHHHCCCCSEEEEEESSGGG--SSC--T-EEGGGHHHHGGG-SEEEEECH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCCCCC--CcCCHHHHHHHHccCCEEEEEee
Confidence 567778888899999999997643221 11134456677888888888543
No 372
>PRK15076 alpha-galactosidase; Provisional
Probab=78.31 E-value=2.1 Score=40.17 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=34.3
Q ss_pred CCCeEEEEcCChhhHHHHHh--------CC----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 12 AGYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 12 ~G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
.|++|.++|+++++.+.... .+ +..++++.+++++||+||+++..+
T Consensus 29 ~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ti~vg 86 (431)
T PRK15076 29 RDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVINAIQVG 86 (431)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeEeeeeC
Confidence 45789999999988763211 12 334668789999999999999865
No 373
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.97 E-value=3 Score=35.32 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 17 iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 17 IGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988766553
No 374
>PRK05854 short chain dehydrogenase; Provisional
Probab=77.87 E-value=2.6 Score=37.51 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+|+.|++.|++|++.+|++++.++..
T Consensus 26 IG~~~a~~La~~G~~Vil~~R~~~~~~~~~ 55 (313)
T PRK05854 26 LGLGLARRLAAAGAEVILPVRNRAKGEAAV 55 (313)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766543
No 375
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=77.86 E-value=4.7 Score=36.48 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.8
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l 29 (301)
+|+.+|..|++.|+ +++++|++.-....+
T Consensus 35 lGs~va~~La~aGvg~i~lvD~D~ve~sNL 64 (338)
T PRK12475 35 LGAANAEALVRAGIGKLTIADRDYVEWSNL 64 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCccccccc
Confidence 48899999999998 799999886433333
No 376
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=77.86 E-value=1.8 Score=40.03 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=36.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHH------HHHh--CCCC-------CCCCHHHHHh----cCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMK------MFSD--MGVP-------TKETPFEVAE----ASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~------~l~~--~g~~-------~~~s~~e~~~----~adiVi~~vp 55 (301)
+|+.+++.|.++||+|++.+|++++.+ .... .++. -.+++.++++ .+|+||.|+.
T Consensus 72 IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~D~Vi~~aa 145 (390)
T PLN02657 72 IGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPVDVVVSCLA 145 (390)
T ss_pred HHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCCcEEEECCc
Confidence 488999999999999999999876432 1111 1211 1223445555 5899998875
No 377
>PRK06349 homoserine dehydrogenase; Provisional
Probab=77.78 E-value=6.2 Score=36.93 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=37.8
Q ss_pred CcHHHHHHHHhC--------C--CeE-EEEcCChhhHHHHHhCCCCCCCCHHHHHh--cCCEEEEecCCC
Q 022170 1 MGFRMASNLMKA--------G--YKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~--------G--~~V-~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adiVi~~vp~~ 57 (301)
||+.++..|.++ | .+| .+++|++++.+.+...+...++++++.+. +.|+|+.|++..
T Consensus 14 VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 14 VGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred HHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 467777666543 3 343 46799987765433234566788999885 479999998753
No 378
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=77.74 E-value=2.9 Score=35.71 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+|+.|+++|++|++.+|+.++.+.+.+
T Consensus 18 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 18 IGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 4899999999999999999999887766544
No 379
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=77.56 E-value=3 Score=35.57 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.+++..|++.|++|++.+|++++.+.+.
T Consensus 21 iG~~ia~~L~~~G~~vvl~~r~~~~~~~~~ 50 (254)
T PRK08085 21 IGFLLATGLAEYGAEIIINDITAERAELAV 50 (254)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999987765543
No 380
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.52 E-value=3.1 Score=34.92 Aligned_cols=30 Identities=27% Similarity=0.537 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 18 iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 18 IGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 488999999999999999999988766553
No 381
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=77.51 E-value=3 Score=35.40 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 24 iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~ 53 (247)
T PRK08945 24 IGREAALTYARHGATVILLGRTEEKLEAVY 53 (247)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Confidence 589999999999999999999988765553
No 382
>PRK08267 short chain dehydrogenase; Provisional
Probab=77.49 E-value=3 Score=35.73 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 13 IGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988777654
No 383
>PRK06720 hypothetical protein; Provisional
Probab=77.47 E-value=3.3 Score=33.37 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=23.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM 28 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~ 28 (301)
+|.+++..|.+.|++|.+++|+.+..+.
T Consensus 28 IG~aia~~l~~~G~~V~l~~r~~~~~~~ 55 (169)
T PRK06720 28 IGRNTALLLAKQGAKVIVTDIDQESGQA 55 (169)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 5889999999999999999998765543
No 384
>PRK06179 short chain dehydrogenase; Provisional
Probab=77.29 E-value=2 Score=37.00 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~ 26 (301)
+|..+++.|++.|++|++.+|++++.
T Consensus 16 iG~~~a~~l~~~g~~V~~~~r~~~~~ 41 (270)
T PRK06179 16 IGRATAEKLARAGYRVFGTSRNPARA 41 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhhc
Confidence 58999999999999999999987654
No 385
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.21 E-value=3.1 Score=35.80 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 22 IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 51 (263)
T PRK07814 22 LGAAIALAFAEAGADVLIAARTESQLDEVA 51 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988766554
No 386
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=77.17 E-value=17 Score=30.36 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=37.0
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh-hHHHHHhCC-CCCC--CCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPTK--ETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~--~s~~e~~~~adiVi~~vp~~ 57 (301)
|..-++.|.+.|.+|++++.+.. ....+.+.| +... .-..+.+.++++||.|..++
T Consensus 21 a~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 21 ALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDE 80 (205)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence 45567889999999999987653 345555543 2221 11134567899999998765
No 387
>PRK07062 short chain dehydrogenase; Provisional
Probab=77.13 E-value=3 Score=35.78 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++++.|++.|++|++.+|++++.+...
T Consensus 20 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (265)
T PRK07062 20 IGLATVELLLEAGASVAICGRDEERLASAE 49 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766543
No 388
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.08 E-value=4.4 Score=36.20 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=37.8
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHh----C-------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD----M-------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~----~-------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
+|.++|..|+..|. ++.++|+++++++.... . .+..+.+.++ +++||+||++...
T Consensus 14 VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~ 81 (312)
T cd05293 14 VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA 81 (312)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence 48889999988875 68999998876532221 1 1222345554 7899999997764
No 389
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=77.04 E-value=6.6 Score=35.58 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=47.3
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHh-------------------CCCCCCCCHHHHHhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-------------------MGVPTKETPFEVAEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~-------------------~g~~~~~s~~e~~~~adiVi~~vp~~~~ 59 (301)
||..+++.+.++ +++|. +++++++....+.+ .++.+..++.+...++|+||.|.|...
T Consensus 12 IGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVVIdaT~~~~- 90 (341)
T PRK04207 12 IGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIVVDATPGGV- 90 (341)
T ss_pred HHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEEEECCCchh-
Confidence 678888877754 56766 45777765544333 123344567777778999999998654
Q ss_pred chhhhhcCCCccccCCCCCCCeEEEEeCCC
Q 022170 60 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 60 ~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 89 (301)
..+.... .+ ..|+.+|+.++.
T Consensus 91 -~~e~a~~---~~-----~aGk~VI~~~~~ 111 (341)
T PRK04207 91 -GAKNKEL---YE-----KAGVKAIFQGGE 111 (341)
T ss_pred -hHHHHHH---HH-----HCCCEEEEcCCC
Confidence 3443321 22 234566666553
No 390
>PRK07454 short chain dehydrogenase; Provisional
Probab=77.04 E-value=3.1 Score=35.07 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=25.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 18 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 18 IGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999987765543
No 391
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.01 E-value=3 Score=35.32 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 13 iG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (243)
T PRK07102 13 IARACARRYAAAGARLYLAARDVERLERLA 42 (243)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999988765543
No 392
>PRK06953 short chain dehydrogenase; Provisional
Probab=76.92 E-value=3.5 Score=34.38 Aligned_cols=31 Identities=6% Similarity=0.259 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.|++|.+.+|++++.+.+..
T Consensus 13 iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~ 43 (222)
T PRK06953 13 IGREFVRQYRADGWRVIATARDAAALAALQA 43 (222)
T ss_pred hhHHHHHHHHhCCCEEEEEECCHHHHHHHHh
Confidence 5889999999999999999999887766654
No 393
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.76 E-value=64 Score=29.92 Aligned_cols=259 Identities=16% Similarity=0.202 Sum_probs=139.7
Q ss_pred HHHHHHHhCCC-eEEEEcCChhhHHHH----HhC-----------------C----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 4 RMASNLMKAGY-KMAVHDVNCNVMKMF----SDM-----------------G----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 4 ~lA~~L~~~G~-~V~~~dr~~~~~~~l----~~~-----------------g----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
-+|..|.+.+. +|-+.+|...+-+++ .+. | -....+.+++..+=|.+|+|+|.+
T Consensus 15 QLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~g~WdtlILavtaD 94 (429)
T PF10100_consen 15 QLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIEGEWDTLILAVTAD 94 (429)
T ss_pred HHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhcccccEEEEEechH
Confidence 45666666654 688889876665444 221 1 122356677777889999999977
Q ss_pred ccchhhhhcCCC-ccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-------cccCCCHH-
Q 022170 58 SHQVLDVYNGPN-GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-------APVSGGVL- 128 (301)
Q Consensus 58 ~~~~~~v~~~~~-~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~pv~g~~~- 128 (301)
+ -.+|+.++. ..+.. . .++|+-..|..... -+...+.+. +. ++.+++ .-.+.+..
T Consensus 95 A--Y~~VL~ql~~~~L~~---v-k~iVLvSPtfGS~~--lv~~~l~~~------~~--~~EVISFStY~gdTr~~d~~~~ 158 (429)
T PF10100_consen 95 A--YLDVLQQLPWEVLKR---V-KSIVLVSPTFGSHL--LVKGFLNDL------GP--DAEVISFSTYYGDTRWSDGEQP 158 (429)
T ss_pred H--HHHHHHhcCHHHHhh---C-CEEEEECcccchHH--HHHHHHHhc------CC--CceEEEeecccccceeccCCCc
Confidence 6 688888763 23432 1 24555444544332 222223221 10 122222 11111111
Q ss_pred -----HhhccceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHH-----------------H-----------
Q 022170 129 -----AAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAA-----------------A----------- 172 (301)
Q Consensus 129 -----~a~~g~l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~-----------------~----------- 172 (301)
.+... .+++|. +....+++..+++.++-++..+..+=.|+. +
T Consensus 159 ~~vlt~~vK~--kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~k 236 (429)
T PF10100_consen 159 NRVLTTAVKK--KIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPK 236 (429)
T ss_pred ceehhhhhhc--eEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcc
Confidence 11122 355554 335678888999998866666654322221 1
Q ss_pred ---HH-----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC--C-cccc----ccCCCCCCcccC-------
Q 022170 173 ---KI-----CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA--R-CWSS----DSYNPVPGVMEG------- 230 (301)
Q Consensus 173 ---k~-----~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~--~-~~~~----~~~~~~~~~~~~------- 230 (301)
|+ +.-.++.-+.....|++.+..++|+++=-+++.++...- . ..++ +.+...+..-+.
T Consensus 237 YvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVRY 316 (429)
T PF10100_consen 237 YVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVRY 316 (429)
T ss_pred eEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHHh
Confidence 11 123334445577899999999999998888888887410 0 0000 111111111000
Q ss_pred ---------CC-CCC-CCC--------------CCcchh----hHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHC
Q 022170 231 ---------VP-ASR-NYG--------------GGFASK----LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 280 (301)
Q Consensus 231 ---------~~-~~~-~~~--------------~~~~~~----~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 280 (301)
.+ ..+ -|+ +-+.+. +=..-++.+..+|+.+|+++|.++...+.|+....+
T Consensus 317 tsiLIDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~~ 395 (429)
T PF10100_consen 317 TSILIDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLSQ 395 (429)
T ss_pred hhheeCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 00 000 111 001111 223346789999999999999999999999988653
No 394
>PRK08703 short chain dehydrogenase; Provisional
Probab=76.72 E-value=3.3 Score=34.90 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=25.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+++.|++.|++|++.+|++++.+.+
T Consensus 18 iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (239)
T PRK08703 18 LGEQVAKAYAAAGATVILVARHQKKLEKV 46 (239)
T ss_pred HHHHHHHHHHHcCCEEEEEeCChHHHHHH
Confidence 58999999999999999999998876554
No 395
>PRK09291 short chain dehydrogenase; Provisional
Probab=76.71 E-value=4.4 Score=34.46 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 14 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 43 (257)
T PRK09291 14 FGREVALRLARKGHNVIAGVQIAPQVTALR 43 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999887665554
No 396
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.65 E-value=4.7 Score=37.89 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=35.3
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh--hHHHHHh--CCCCCCC--CHHHHHhcCCEEEEe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN--VMKMFSD--MGVPTKE--TPFEVAEASDVVITM 53 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~--~g~~~~~--s~~e~~~~adiVi~~ 53 (301)
|.++|+.|.+.|++|+++|..+. ..+.+.+ .|+.... ...+.+.++|+|+.+
T Consensus 18 G~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 18 GLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIIS 75 (448)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEEC
Confidence 67789999999999999997543 2234554 2655422 223456788988774
No 397
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=76.64 E-value=3.3 Score=35.34 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=25.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+++.|++.|++|.+.+|++++.+.+
T Consensus 22 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 50 (255)
T PRK07523 22 IGYALAEGLAQAGAEVILNGRDPAKLAAA 50 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999998776554
No 398
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=76.64 E-value=3 Score=36.11 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.+++..|++.|++|.+.+|+++..+.+.
T Consensus 22 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (278)
T PRK08277 22 LGGAMAKELARAGAKVAILDRNQEKAEAVV 51 (278)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987665543
No 399
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=76.61 E-value=3 Score=35.42 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 16 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 16 IGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 488999999999999999999988776553
No 400
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=76.61 E-value=3.2 Score=27.84 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN 24 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~ 24 (301)
|...|..|.+.|++|++++++..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHCCCcEEEEecCcc
Confidence 67788999999999999998765
No 401
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=76.54 E-value=3.3 Score=35.31 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..++..|+++|++|++.+|+++..+.+.
T Consensus 23 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 52 (256)
T PRK06124 23 LGFEIARALAGAGAHVLVNGRNAATLEAAV 52 (256)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 488999999999999999999987665543
No 402
>PRK05876 short chain dehydrogenase; Provisional
Probab=76.30 E-value=3.5 Score=35.91 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=25.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|..|++.|++|++.+|+++..+.+.
T Consensus 18 IG~ala~~La~~G~~Vv~~~r~~~~l~~~~ 47 (275)
T PRK05876 18 IGLATGTEFARRGARVVLGDVDKPGLRQAV 47 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987765543
No 403
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=76.26 E-value=6.4 Score=30.49 Aligned_cols=96 Identities=17% Similarity=0.183 Sum_probs=55.1
Q ss_pred HHHHHHhCCCeEEEEcCChhhH----HHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 5 MASNLMKAGYKMAVHDVNCNVM----KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 5 lA~~L~~~G~~V~~~dr~~~~~----~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
.+..|.+.||+|++=.-.-+.. +...+.|+...++.+++..+||+|+-.=|.+. .++- .+ .+|
T Consensus 19 ~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~---~e~~-----~l-----~~g 85 (136)
T PF05222_consen 19 DVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSE---EELA-----LL-----KPG 85 (136)
T ss_dssp HHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---G---GGGG-----GS------TT
T ss_pred HHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCH---HHHh-----hc-----CCC
Confidence 4577899999998743221111 34566799999988899999999997766322 2221 12 356
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCC
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 125 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g 125 (301)
++++-..... ....+.+.+.+. ++..++--.+.
T Consensus 86 ~~li~~~~~~--~~~~~~~~l~~~----------~it~~a~E~ip 118 (136)
T PF05222_consen 86 QTLIGFLHPA--QNKELLEALAKK----------GITAFALELIP 118 (136)
T ss_dssp CEEEEE--GG--GHHHHHHHHHHC----------TEEEEEGGGSB
T ss_pred cEEEEeeccc--cCHHHHHHHHHC----------CCEEEEhhhCc
Confidence 7777444333 344555555431 26666654443
No 404
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=76.24 E-value=8.9 Score=34.05 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=50.7
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhH--HHHHhCCCCC-CCCHHHHHh-----cCCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVM--KMFSDMGVPT-KETPFEVAE-----ASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~--~~l~~~g~~~-~~s~~e~~~-----~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
+|+.+...+.+. +.++. ++|+++++. +...+.|+.. .++.++.++ +.|+||.++|.... .+....
T Consensus 15 IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H--~e~a~~--- 89 (302)
T PRK08300 15 IGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH--VRHAAK--- 89 (302)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH--HHHHHH---
Confidence 356666666654 45655 679988643 3445567765 467888874 58889999996543 333321
Q ss_pred cccCCCCCCCeEEEEeCCCC
Q 022170 71 LLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~ 90 (301)
.. ..|+.+||.|...
T Consensus 90 a~-----eaGk~VID~sPA~ 104 (302)
T PRK08300 90 LR-----EAGIRAIDLTPAA 104 (302)
T ss_pred HH-----HcCCeEEECCccc
Confidence 12 3567888887654
No 405
>PRK06914 short chain dehydrogenase; Provisional
Probab=76.21 E-value=3.3 Score=35.87 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..++..|++.||+|++++|+++..+.+.
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 44 (280)
T PRK06914 15 FGLLTTLELAKKGYLVIATMRNPEKQENLL 44 (280)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776654
No 406
>PRK09072 short chain dehydrogenase; Provisional
Probab=76.10 E-value=3.4 Score=35.46 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 17 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 46 (263)
T PRK09072 17 IGQALAEALAAAGARLLLVGRNAEKLEALA 46 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 588999999999999999999988776654
No 407
>PRK06194 hypothetical protein; Provisional
Probab=76.02 E-value=3.4 Score=35.95 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++++|+++..+...
T Consensus 18 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 18 FGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 588999999999999999999887665543
No 408
>PRK07074 short chain dehydrogenase; Provisional
Probab=75.56 E-value=3.6 Score=35.07 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=26.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..++..|++.|++|++.+|++++.+.+.+
T Consensus 14 iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 14 IGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999888766654
No 409
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.47 E-value=5.3 Score=38.15 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=35.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh--hHHHHHhC--CCCCCC--CHHHHHhcCCEEEEe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN--VMKMFSDM--GVPTKE--TPFEVAEASDVVITM 53 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~--g~~~~~--s~~e~~~~adiVi~~ 53 (301)
|.++|+.|.+.|++|+++|.++. ..+.+.+. |+.... ...+.+.++|+||..
T Consensus 19 G~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 19 GLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 67889999999999999996543 23445554 333321 234456689999986
No 410
>PRK06196 oxidoreductase; Provisional
Probab=75.39 E-value=3.4 Score=36.72 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 38 IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~ 67 (315)
T PRK06196 38 LGLETTRALAQAGAHVIVPARRPDVAREAL 67 (315)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776554
No 411
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=75.34 E-value=3.9 Score=35.53 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=32.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcC--CEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEAS--DVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~a--diVi~~vp 55 (301)
+|..+++.|.+.||+|++.+|+. ..+.-.+++.+++++. |+|+-|..
T Consensus 11 iG~~l~~~l~~~g~~v~~~~r~~--------~d~~~~~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 11 LGRELVQQLSPEGRVVVALTSSQ--------LDLTDPEALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred HHHHHHHHHHhcCCEEEEeCCcc--------cCCCCHHHHHHHHHhCCCCEEEECCc
Confidence 48899999999999999998862 1122223445555554 99888765
No 412
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=75.02 E-value=8.8 Score=36.93 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=28.7
Q ss_pred CCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 37 KETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 37 ~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
+.++.|-+.++|+|+.++.-++- ++.- ++ .+|.++|||..
T Consensus 196 T~~lae~v~~ADIvIvAiG~Pef-VKgd------Wi-----KpGavVIDvGI 235 (935)
T KOG4230|consen 196 TRNLAEKVSRADIVIVAIGQPEF-VKGD------WI-----KPGAVVIDVGI 235 (935)
T ss_pred CccHHHHhccCCEEEEEcCCcce-eecc------cc-----cCCcEEEEccc
Confidence 35788889999999999986554 4432 33 35678888864
No 413
>PRK05872 short chain dehydrogenase; Provisional
Probab=74.96 E-value=3.5 Score=36.25 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=27.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+|+.|++.|++|.+.+|++++.+.+.+
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~ 51 (296)
T PRK05872 21 IGAELARRLHARGAKLALVDLEEAELAALAA 51 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
No 414
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=74.83 E-value=3.6 Score=35.10 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=26.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..++..|+++|++|.+.+|++++.+.+.+
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (262)
T PRK13394 19 IGKEIALELARAGAAVAIADLNQDGANAVAD 49 (262)
T ss_pred HHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 5889999999999999999999877665543
No 415
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=74.68 E-value=1.7 Score=39.30 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=44.6
Q ss_pred cHHHHHHHHhCCCeEE---EEcCChhhHHHHHhCCC--CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKAGYKMA---VHDVNCNVMKMFSDMGV--PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~---~~dr~~~~~~~l~~~g~--~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|..|.+.|.+++|++. ...++++.-..+.-.|. ...+...+.++++|+||+|+|... .+++... ++
T Consensus 12 G~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~--s~~~a~~---~~---- 82 (339)
T TIGR01296 12 GQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSV--SKEFAPK---AA---- 82 (339)
T ss_pred HHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHH--HHHHHHH---HH----
Confidence 7788999999898743 33344332222222221 111111234578999999999654 4554432 22
Q ss_pred CCCCeEEEEeCC
Q 022170 77 SVRPQLLIDSST 88 (301)
Q Consensus 77 ~~~~~ivid~st 88 (301)
..|..|||.|+
T Consensus 83 -~~G~~VID~ss 93 (339)
T TIGR01296 83 -KCGAIVIDNTS 93 (339)
T ss_pred -HCCCEEEECCH
Confidence 24568999986
No 416
>PRK09186 flagellin modification protein A; Provisional
Probab=74.65 E-value=4.1 Score=34.67 Aligned_cols=30 Identities=13% Similarity=0.312 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+|..|++.|++|.+.+|++++.+.+.
T Consensus 16 iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~ 45 (256)
T PRK09186 16 IGSALVKAILEAGGIVIAADIDKEALNELL 45 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEecChHHHHHHH
Confidence 589999999999999999999988776553
No 417
>PRK08251 short chain dehydrogenase; Provisional
Probab=74.55 E-value=3.8 Score=34.72 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 14 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (248)
T PRK08251 14 LGAGMAREFAAKGRDLALCARRTDRLEELK 43 (248)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999988776554
No 418
>PRK07677 short chain dehydrogenase; Provisional
Probab=74.53 E-value=4.1 Score=34.66 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 13 iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (252)
T PRK07677 13 MGKAMAKRFAEEGANVVITGRTKEKLEEAK 42 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987665543
No 419
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.52 E-value=4.1 Score=34.61 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 19 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 48 (253)
T PRK06172 19 IGRATALAFAREGAKVVVADRDAAGGEETV 48 (253)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988765543
No 420
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=74.39 E-value=3.4 Score=36.23 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=38.0
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHH--HHHhCC--------CCCCCCHHHHHhcCCEEEEe
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMK--MFSDMG--------VPTKETPFEVAEASDVVITM 53 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~--~l~~~g--------~~~~~s~~e~~~~adiVi~~ 53 (301)
+|+.+++.|++.| ++|.+.|+.+.... .+...+ +.-..++.++++++|+||-+
T Consensus 9 lG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~ 73 (280)
T PF01073_consen 9 LGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHT 73 (280)
T ss_pred HHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEe
Confidence 4899999999999 78999998765422 222222 22334677888999999987
No 421
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=74.25 E-value=1.9 Score=36.17 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=34.9
Q ss_pred cHHHHHHH--HhCCCeEEE-EcCChhhHHHHHhCC--CCCCCCHHHHHhc--CCEEEEecCCCc
Q 022170 2 GFRMASNL--MKAGYKMAV-HDVNCNVMKMFSDMG--VPTKETPFEVAEA--SDVVITMLPSSS 58 (301)
Q Consensus 2 G~~lA~~L--~~~G~~V~~-~dr~~~~~~~l~~~g--~~~~~s~~e~~~~--adiVi~~vp~~~ 58 (301)
|..++..+ ...|+++.+ +|+++++..... .| +....++.+.++. .|+|++|+|+..
T Consensus 96 G~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~ 158 (213)
T PRK05472 96 GRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEA 158 (213)
T ss_pred HHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence 45555542 245788764 688887664332 12 2233456676654 999999999764
No 422
>PRK07060 short chain dehydrogenase; Provisional
Probab=74.06 E-value=4.2 Score=34.24 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..++..|++.|++|++.+|++++.+.+.+
T Consensus 21 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 21 IGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999887766543
No 423
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=73.95 E-value=5.8 Score=35.85 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=24.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|+.+++.|++.|++|++.+|++++.+.+
T Consensus 22 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 22 IGSWLVKLLLQRGYTVHATLRDPAKSLHL 50 (353)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 48899999999999999988887765443
No 424
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=73.95 E-value=4.3 Score=33.61 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++++.|+++|++|.+.|++.+.+++-+.
T Consensus 26 IGrAia~~la~~Garv~v~dl~~~~A~ata~ 56 (256)
T KOG1200|consen 26 IGRAIAQLLAKKGARVAVADLDSAAAEATAG 56 (256)
T ss_pred HHHHHHHHHHhcCcEEEEeecchhhHHHHHh
Confidence 5899999999999999999998876655443
No 425
>PRK06139 short chain dehydrogenase; Provisional
Probab=73.92 E-value=3.8 Score=36.85 Aligned_cols=30 Identities=10% Similarity=0.276 Sum_probs=26.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 19 IG~aia~~la~~G~~Vvl~~R~~~~l~~~~ 48 (330)
T PRK06139 19 IGQATAEAFARRGARLVLAARDEEALQAVA 48 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999998876554
No 426
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=73.90 E-value=5.1 Score=36.05 Aligned_cols=53 Identities=9% Similarity=0.219 Sum_probs=35.1
Q ss_pred CcHHHHHHHHhC-CCeEEEEcCChhhHHHHHhC-CCC-----CC---CCHHHHHhcCCEEEEe
Q 022170 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GVP-----TK---ETPFEVAEASDVVITM 53 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~-g~~-----~~---~s~~e~~~~adiVi~~ 53 (301)
+|+.++..|.+. ||+|++.+|++++...+... ++. .. ..+.++++++|+||=+
T Consensus 13 iGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 13 IGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 489999999876 79999999987665544322 211 11 1233456789999854
No 427
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=73.88 E-value=13 Score=32.39 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=24.1
Q ss_pred cHHHHHHHHhCCCe-EEEEcCChhhHHHHHhCCCC
Q 022170 2 GFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMGVP 35 (301)
Q Consensus 2 G~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~g~~ 35 (301)
|...++.+...|.+ |++.++++++.+.+.+.|+.
T Consensus 133 G~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 133 GLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 55555555667876 87788888888777776653
No 428
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=73.81 E-value=5.4 Score=37.47 Aligned_cols=52 Identities=21% Similarity=0.168 Sum_probs=35.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhh----HHHHHhCCCCCCC--CHHHHHhcCCEEEEe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNV----MKMFSDMGVPTKE--TPFEVAEASDVVITM 53 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~----~~~l~~~g~~~~~--s~~e~~~~adiVi~~ 53 (301)
|.+.|+.|.+.|++|++||.++.. ...+...++.... .+.+....+|+|+..
T Consensus 19 G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S 76 (448)
T COG0771 19 GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS 76 (448)
T ss_pred cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC
Confidence 788999999999999999977665 1222334543322 222566789999985
No 429
>PLN02253 xanthoxin dehydrogenase
Probab=73.71 E-value=4.2 Score=35.24 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++++.|++.|++|.+.+|+++..+.+.
T Consensus 30 IG~~la~~l~~~G~~v~~~~~~~~~~~~~~ 59 (280)
T PLN02253 30 IGESIVRLFHKHGAKVCIVDLQDDLGQNVC 59 (280)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999877665554
No 430
>PRK08309 short chain dehydrogenase; Provisional
Probab=73.60 E-value=4.4 Score=32.95 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=25.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
||..++..|++.|++|.+.+|++++.+.+..
T Consensus 11 ~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 11 MLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred HHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 4667999999999999999999887766643
No 431
>PRK06057 short chain dehydrogenase; Provisional
Probab=73.53 E-value=4.4 Score=34.59 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=25.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|+++|++|++.+|++.+.+.+.
T Consensus 19 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 19 IGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987765554
No 432
>PRK07774 short chain dehydrogenase; Provisional
Probab=73.41 E-value=4.2 Score=34.44 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=24.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+++.|++.|++|++.+|+++..+.+
T Consensus 18 iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 18 IGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999999997765544
No 433
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=73.29 E-value=4.2 Score=34.76 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+|+.|++.|++|++.+|++++.+.+.
T Consensus 24 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 53 (259)
T PRK08213 24 LGLQIAEALGEAGARVVLSARKAEELEEAA 53 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999987765543
No 434
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=73.07 E-value=3.1 Score=37.17 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=39.7
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
|..|.+.|.++.+ ++.....+..+ . . .+.++..+++|+||+|+|... ..+.... +. ..|
T Consensus 15 G~eLlrlL~~hp~~~l~~~~s~~~~--~-----~---~~~~~~~~~~DvvFlalp~~~--s~~~~~~---~~-----~~g 74 (313)
T PRK11863 15 GLQIRERLAGRSDIELLSIPEAKRK--D-----A---AARRELLNAADVAILCLPDDA--AREAVAL---ID-----NPA 74 (313)
T ss_pred HHHHHHHHhcCCCeEEEEEecCCCC--c-----c---cCchhhhcCCCEEEECCCHHH--HHHHHHH---HH-----hCC
Confidence 6677787877653 33322222211 1 1 223445578999999999764 4554432 22 246
Q ss_pred eEEEEeCCC
Q 022170 81 QLLIDSSTI 89 (301)
Q Consensus 81 ~ivid~st~ 89 (301)
..|||.|+-
T Consensus 75 ~~VIDlSad 83 (313)
T PRK11863 75 TRVIDASTA 83 (313)
T ss_pred CEEEECChh
Confidence 789999963
No 435
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=73.01 E-value=4.1 Score=36.26 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.|++|++.+|+.++.+.+.+
T Consensus 18 IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~ 48 (322)
T PRK07453 18 VGLYAAKALAKRGWHVIMACRNLKKAEAAAQ 48 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5889999999999999999999887765543
No 436
>PRK07825 short chain dehydrogenase; Provisional
Probab=72.91 E-value=4.3 Score=35.02 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 17 IGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 488999999999999999999998876654
No 437
>PRK06949 short chain dehydrogenase; Provisional
Probab=72.83 E-value=4.4 Score=34.49 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..++..|++.|++|++.+|++++.+.+..
T Consensus 21 IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 21 LGARFAQVLAQAGAKVVLASRRVERLKELRA 51 (258)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999888766543
No 438
>PRK08643 acetoin reductase; Validated
Probab=72.68 E-value=4.9 Score=34.23 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=25.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 14 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08643 14 IGFAIAKRLVEDGFKVAIVDYNEETAQAAA 43 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987765554
No 439
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=72.57 E-value=4.3 Score=36.59 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=22.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~ 26 (301)
+|+.++..|++.||+|++.+|++...
T Consensus 16 IG~~l~~~L~~~G~~V~~~~r~~~~~ 41 (349)
T TIGR02622 16 KGSWLSLWLLELGAEVYGYSLDPPTS 41 (349)
T ss_pred hHHHHHHHHHHCCCEEEEEeCCCccc
Confidence 58999999999999999999877643
No 440
>PRK12939 short chain dehydrogenase; Provisional
Probab=72.50 E-value=4.8 Score=33.99 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..++..|.+.|++|.+.+|++++.+.+.
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 19 LGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988765543
No 441
>PRK12828 short chain dehydrogenase; Provisional
Probab=72.42 E-value=5 Score=33.51 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=24.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+++.|+++|++|++.+|++++..+.
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (239)
T PRK12828 19 LGRATAAWLAARGARVALIGRGAAPLSQT 47 (239)
T ss_pred HhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence 48899999999999999999988765443
No 442
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=72.26 E-value=5 Score=35.03 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|..|++.|.+|++.+|++++.+....
T Consensus 20 IG~aia~~la~~Ga~v~i~~r~~~~~~~~~~ 50 (270)
T KOG0725|consen 20 IGKAIALLLAKAGAKVVITGRSEERLEETAQ 50 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5889999999999999999999998765543
No 443
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=72.19 E-value=4.9 Score=33.21 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=20.9
Q ss_pred HHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 6 ASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 6 A~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+.-|++.||+|+.||.|+..++.+.+
T Consensus 45 alyLA~~G~~VtAvD~s~~al~~l~~ 70 (192)
T PF03848_consen 45 ALYLASQGFDVTAVDISPVALEKLQR 70 (192)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 56789999999999999988776643
No 444
>PLN02583 cinnamoyl-CoA reductase
Probab=72.12 E-value=5.5 Score=35.06 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC 23 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~ 23 (301)
+|+.++..|+++||+|++..|++
T Consensus 18 IG~~lv~~Ll~~G~~V~~~~R~~ 40 (297)
T PLN02583 18 VGFWLVKRLLSRGYTVHAAVQKN 40 (297)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCc
Confidence 48999999999999999988864
No 445
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.11 E-value=5.2 Score=33.63 Aligned_cols=36 Identities=17% Similarity=0.436 Sum_probs=31.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH-hCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPT 36 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~-~~g~~~ 36 (301)
+|.++|+-|.++||.|+...|+.+.++.|. +.|+..
T Consensus 20 IG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~ 56 (289)
T KOG1209|consen 20 IGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKP 56 (289)
T ss_pred hhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCee
Confidence 588999999999999999999999999887 556543
No 446
>PRK12367 short chain dehydrogenase; Provisional
Probab=72.10 E-value=5.6 Score=34.07 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=21.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC 23 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~ 23 (301)
+|.++|+.|++.|++|++.+|++
T Consensus 26 IG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 26 LGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred HHHHHHHHHHHCCCEEEEEECCc
Confidence 58999999999999999999886
No 447
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.90 E-value=5 Score=34.82 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCN 24 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~ 24 (301)
+|.++|+.|++.|++|.+.+|+.+
T Consensus 21 IG~aiA~~la~~Ga~V~~~~r~~~ 44 (271)
T PRK06505 21 IAWGIAKQLAAQGAELAFTYQGEA 44 (271)
T ss_pred HHHHHHHHHHhCCCEEEEecCchH
Confidence 589999999999999999988754
No 448
>PRK07109 short chain dehydrogenase; Provisional
Probab=71.89 E-value=4.6 Score=36.36 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 20 IG~~la~~la~~G~~Vvl~~R~~~~l~~~~ 49 (334)
T PRK07109 20 VGRATARAFARRGAKVVLLARGEEGLEALA 49 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 588999999999999999999988766543
No 449
>PRK06125 short chain dehydrogenase; Provisional
Probab=71.81 E-value=5.1 Score=34.28 Aligned_cols=29 Identities=10% Similarity=0.291 Sum_probs=25.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|.+++..|++.|++|++.+|++++.+.+
T Consensus 19 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 47 (259)
T PRK06125 19 IGAAAAEAFAAEGCHLHLVARDADALEAL 47 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999998876654
No 450
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=71.68 E-value=6.8 Score=36.44 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMK 27 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~ 27 (301)
+|.+++..|++.|++|.+.+|++++.+
T Consensus 190 IG~aLA~~La~~G~~Vi~l~r~~~~l~ 216 (406)
T PRK07424 190 LGQALLKELHQQGAKVVALTSNSDKIT 216 (406)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 589999999999999999999877653
No 451
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=71.66 E-value=5.3 Score=35.63 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=38.4
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC-------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~~-------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
+|.++|..|+..|. ++.++|+++++++. +... ..+......+.+++||+|+++...
T Consensus 10 VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 10 VGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 48899999988885 69999998776532 2221 112222335778999999998764
No 452
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=71.65 E-value=5.3 Score=33.68 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=24.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+++.|+++|++|++.+|++++...+
T Consensus 18 iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 18 IGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999997665443
No 453
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=71.63 E-value=19 Score=31.99 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=44.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
.|.+-|+.|...|..|++-..+|-.+-+..=.|.++ .+++|+++..||++.+...
T Consensus 225 VGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V-~tm~ea~~e~difVTtTGc 279 (434)
T KOG1370|consen 225 VGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEV-TTLEEAIREVDIFVTTTGC 279 (434)
T ss_pred cchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEe-eeHHHhhhcCCEEEEccCC
Confidence 377889999999999999999886554444447665 5899999999999999874
No 454
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=71.52 E-value=4.2 Score=36.08 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=50.7
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCC------CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVP------TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~------~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
|+.=|+-..--|-+|++.|+|.++...+-.. +.+ -...+++.+..+|+||-+|--+.+....++.. .+++.
T Consensus 180 gtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~--e~vk~ 257 (371)
T COG0686 180 GTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTR--EMVKQ 257 (371)
T ss_pred cchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhH--HHHHh
Confidence 3444555555678999999999988777543 222 12356778899999998775443212222221 22333
Q ss_pred CCCCCCeEEEEeC
Q 022170 75 GNSVRPQLLIDSS 87 (301)
Q Consensus 75 ~~~~~~~ivid~s 87 (301)
+.+|.++||..
T Consensus 258 --MkpGsVivDVA 268 (371)
T COG0686 258 --MKPGSVIVDVA 268 (371)
T ss_pred --cCCCcEEEEEE
Confidence 35778898875
No 455
>PRK07041 short chain dehydrogenase; Provisional
Probab=71.51 E-value=5.3 Score=33.32 Aligned_cols=30 Identities=10% Similarity=0.286 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..++..|+++|++|++.+|++++.+.+.
T Consensus 9 iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 38 (230)
T PRK07041 9 IGLALARAFAAEGARVTIASRSRDRLAAAA 38 (230)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999987765543
No 456
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.48 E-value=5.3 Score=34.05 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..++..|+++||+|++.+|+++..+.+.+
T Consensus 23 iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 23 IGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999877665543
No 457
>PRK06138 short chain dehydrogenase; Provisional
Probab=71.45 E-value=5.3 Score=33.80 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=25.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|+++..+...
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (252)
T PRK06138 17 IGRATAKLFAREGARVVVADRDAEAAERVA 46 (252)
T ss_pred HHHHHHHHHHHCCCeEEEecCCHHHHHHHH
Confidence 588999999999999999999987665443
No 458
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=71.32 E-value=5.3 Score=33.82 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.|++|++.+|+++..+.+.+
T Consensus 13 lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~ 43 (255)
T TIGR01963 13 IGLAIALALAAAGANVVVNDLGEAGAEAAAK 43 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999877665543
No 459
>PRK07831 short chain dehydrogenase; Provisional
Probab=71.29 E-value=5.4 Score=34.16 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=25.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++++.|++.|++|++.+|++++.+...
T Consensus 30 IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~ 59 (262)
T PRK07831 30 IGSATARRALEEGARVVISDIHERRLGETA 59 (262)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999887765543
No 460
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=71.17 E-value=5 Score=34.25 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=25.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++++.|++.|++|.+.+|++++.+.+.
T Consensus 14 IG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 43 (259)
T PRK12384 14 LGAFLCHGLAEEGYRVAVADINSEKAANVA 43 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 488999999999999999999987665443
No 461
>PRK08263 short chain dehydrogenase; Provisional
Probab=71.12 E-value=5 Score=34.75 Aligned_cols=31 Identities=6% Similarity=0.200 Sum_probs=26.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..++..|++.|++|++.+|+++..+.+.+
T Consensus 15 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 45 (275)
T PRK08263 15 FGRAWTEAALERGDRVVATARDTATLADLAE 45 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5889999999999999999999888766544
No 462
>PRK07832 short chain dehydrogenase; Provisional
Probab=70.91 E-value=5.4 Score=34.46 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=25.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+++.|++.|++|++++|+++..+.+
T Consensus 12 iG~~la~~la~~G~~vv~~~r~~~~~~~~ 40 (272)
T PRK07832 12 IGRATALRLAAQGAELFLTDRDADGLAQT 40 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58899999999999999999998766544
No 463
>PRK06500 short chain dehydrogenase; Provisional
Probab=70.86 E-value=5.6 Score=33.58 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 18 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 18 IGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 588999999999999999999987665544
No 464
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=70.85 E-value=18 Score=29.70 Aligned_cols=54 Identities=15% Similarity=0.014 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCC--CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 4 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
.++..+.+.|++|..+|...-..+.+.... ........+.+.+||.||++.|..
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y 77 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY 77 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc
Confidence 344556668999988875432233332211 111223445678999999999964
No 465
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.56 E-value=5.7 Score=33.94 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=21.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC 23 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~ 23 (301)
+|.++|+.|++.|++|++.+|+.
T Consensus 21 IG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 21 IAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred hHHHHHHHHHHCCCEEEEecCch
Confidence 68999999999999999999884
No 466
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=70.43 E-value=30 Score=26.59 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=56.5
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC--------CCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--------GVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
+|+.++.+|++.|+ +++++|.+.-....+..+ |-..+..+.+.++ ..++-+.+.+.... -... .
T Consensus 10 lGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~-~~~~----~ 84 (143)
T cd01483 10 LGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS-EDNL----D 84 (143)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC-hhhH----H
Confidence 58899999999997 699998775444444332 2221222222222 23455555543221 1111 0
Q ss_pred ccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCC
Q 022170 70 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 125 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g 125 (301)
..+ .+..++|+|+.. +.....+.+.+.+. ++.|+++-..+
T Consensus 85 ~~~-----~~~diVi~~~d~-~~~~~~l~~~~~~~----------~i~~i~~~~~g 124 (143)
T cd01483 85 DFL-----DGVDLVIDAIDN-IAVRRALNRACKEL----------GIPVIDAGGLG 124 (143)
T ss_pred HHh-----cCCCEEEECCCC-HHHHHHHHHHHHHc----------CCCEEEEcCCC
Confidence 122 134588888766 55556666666542 26677766655
No 467
>PRK07069 short chain dehydrogenase; Validated
Probab=70.37 E-value=5.9 Score=33.50 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=24.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCC-hhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVN-CNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~-~~~~~~l 29 (301)
+|..+++.|++.|++|++.+|+ +++.+.+
T Consensus 11 iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 40 (251)
T PRK07069 11 LGRAIARRMAEQGAKVFLTDINDAAGLDAF 40 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcchHHHHH
Confidence 5899999999999999999998 5555444
No 468
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=70.35 E-value=5.5 Score=33.67 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|.+.+|++++...+.
T Consensus 15 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 44 (250)
T TIGR03206 15 IGGATCRRFAEEGAKVAVFDLNREAAEKVA 44 (250)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 488999999999999999999987765543
No 469
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=70.33 E-value=40 Score=31.77 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCH-HHHHhcCCEEEEec
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETP-FEVAEASDVVITML 54 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~-~e~~~~adiVi~~v 54 (301)
++||..|.+.||+|++.|.+... .+.|.+.|+.....- ++-+.+++.|+..-
T Consensus 21 sglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~ 74 (459)
T COG0773 21 SGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSN 74 (459)
T ss_pred HHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEec
Confidence 57999999999999999876544 567888888765422 23356677776643
No 470
>PRK09242 tropinone reductase; Provisional
Probab=70.23 E-value=5.7 Score=33.86 Aligned_cols=30 Identities=10% Similarity=0.297 Sum_probs=25.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..++..|++.|++|++.+|+++..+.+.
T Consensus 21 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 50 (257)
T PRK09242 21 IGLAIAREFLGLGADVLIVARDADALAQAR 50 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999987765553
No 471
>PRK07035 short chain dehydrogenase; Provisional
Probab=69.91 E-value=5.9 Score=33.61 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 20 IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~ 49 (252)
T PRK07035 20 IGEAIAKLLAQQGAHVIVSSRKLDGCQAVA 49 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999987765554
No 472
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=69.89 E-value=5.9 Score=34.03 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..++..|++.|++|++.+|++++.+.+.
T Consensus 22 iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~ 51 (265)
T PRK07097 22 IGFAIAKAYAKAGATIVFNDINQELVDKGL 51 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 588999999999999999999987765543
No 473
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=69.75 E-value=7.7 Score=34.67 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=36.0
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHHhC----CC-------CCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM----GV-------PTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~----g~-------~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.+++.|++.| ++|++++|+..+...+.+. ++ .-..++.+++++.|+||-+..
T Consensus 16 IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~Ag 83 (324)
T TIGR03589 16 FGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAAA 83 (324)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECcc
Confidence 4889999999886 7899999887655433221 11 111234456677899987653
No 474
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=69.72 E-value=3.5 Score=37.28 Aligned_cols=78 Identities=10% Similarity=0.039 Sum_probs=42.4
Q ss_pred cHHHHHHHHhCCCeEEE--EcCChhhHHH-HHhCC--CCCCC-CHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 2 GFRMASNLMKAGYKMAV--HDVNCNVMKM-FSDMG--VPTKE-TPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~--~dr~~~~~~~-l~~~g--~~~~~-s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
|..|.+.|.+++|++.- +=++.+...+ +.-.+ ..... +..+ ++++|+||+|+|... ..+++.. +.
T Consensus 17 G~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~~--s~~~v~~---~~--- 87 (336)
T PRK05671 17 GEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAAV--SRSFAEK---AR--- 87 (336)
T ss_pred HHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHHH--HHHHHHH---HH---
Confidence 67788888888886431 2223222221 11111 11111 2223 478999999999543 4444422 22
Q ss_pred CCCCCeEEEEeCCCC
Q 022170 76 NSVRPQLLIDSSTID 90 (301)
Q Consensus 76 ~~~~~~ivid~st~~ 90 (301)
..|..+||.|+-.
T Consensus 88 --~~G~~VIDlS~~f 100 (336)
T PRK05671 88 --AAGCSVIDLSGAL 100 (336)
T ss_pred --HCCCeEEECchhh
Confidence 2467899999743
No 475
>PRK07576 short chain dehydrogenase; Provisional
Probab=69.69 E-value=5.7 Score=34.21 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=24.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+++.|++.|++|++.+|+++..+.+
T Consensus 21 IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 49 (264)
T PRK07576 21 INLGIAQAFARAGANVAVASRSQEKVDAA 49 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999998766544
No 476
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=69.51 E-value=26 Score=33.49 Aligned_cols=109 Identities=11% Similarity=0.100 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CCccccccCCCCCCcccCCC-CCC-CCCC
Q 022170 169 GAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP-ASR-NYGG 239 (301)
Q Consensus 169 a~~~k~~~N~~~~~~~~~~~E~~~l~~~------~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 239 (301)
...+.-+.+.+....+...+|++.+.++ .++|..++..+++.|+ .++|++..... .+...+ +.. -+++
T Consensus 327 ~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~---a~~~~~~l~~l~~~~ 403 (493)
T PLN02350 327 KQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKK---AYDRNPDLASLLVDP 403 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHH---HHHcCCChhhhcCCH
Confidence 4566778888888999999999999873 3688999999999886 45665432110 000000 000 0011
Q ss_pred Cc--chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHC
Q 022170 240 GF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 280 (301)
Q Consensus 240 ~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 280 (301)
.| .+.......+.++..+-+.|+|+|.+.+++..|+.-...
T Consensus 404 ~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~ 446 (493)
T PLN02350 404 EFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRA 446 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC
Confidence 11 123445567789999999999999999999966554443
No 477
>PRK05717 oxidoreductase; Validated
Probab=69.39 E-value=6.2 Score=33.63 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=25.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+|+.|+++|++|.+.+|++++.+.+.
T Consensus 22 IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~ 51 (255)
T PRK05717 22 IGLGIAAWLIAEGWQVVLADLDRERGSKVA 51 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999887665543
No 478
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.97 E-value=6.4 Score=32.98 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+++.|++.|++|++.+|++++.+.+
T Consensus 17 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 17 LGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999998877655
No 479
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.72 E-value=8 Score=36.70 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=36.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh-----hHHHHHhCCCCCCC-CHHHHHhcCCEEEEecCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKE-TPFEVAEASDVVITMLPS 56 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~-s~~e~~~~adiVi~~vp~ 56 (301)
|..+|..|.+.|++|+++|+++. ..+.+.+.|+.... ...+....+|+||++..-
T Consensus 28 G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi 88 (480)
T PRK01438 28 GFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGW 88 (480)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCc
Confidence 67789999999999999996542 22345566765432 111133568999988643
No 480
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.67 E-value=6.5 Score=33.74 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV 25 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~ 25 (301)
+|.++|+.|++.|++|.+.+|+.+.
T Consensus 24 IG~a~a~~la~~G~~v~l~~r~~~~ 48 (258)
T PRK07533 24 IAWGCARAFRALGAELAVTYLNDKA 48 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEeCChhh
Confidence 5889999999999999998888543
No 481
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=68.64 E-value=7.5 Score=36.32 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=35.0
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhh-HH---H-HH-hCCCCCCC-CHHHHHhcCCEEEEec
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNV-MK---M-FS-DMGVPTKE-TPFEVAEASDVVITML 54 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~-~~---~-l~-~~g~~~~~-s~~e~~~~adiVi~~v 54 (301)
|.++|+.|.+.|++|+++|..+.. .. . +. ..|+.... ...+.+.++|+|+.+-
T Consensus 11 G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 11 GRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSP 70 (433)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECC
Confidence 678999999999999999975442 21 1 22 24665432 1244567899888754
No 482
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=68.39 E-value=4.2 Score=37.19 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=33.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH-HHHH---h---CCCCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM-KMFS---D---MGVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~-~~l~---~---~g~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|.+.||+|++.+|.+... .... + ..+....++..++.++|+||-+..
T Consensus 33 IG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 33 IASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred HHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence 48999999999999999999864321 1100 0 011111123344567899988863
No 483
>PRK06197 short chain dehydrogenase; Provisional
Probab=68.35 E-value=6.1 Score=34.83 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+|+.|++.|++|++.+|++++.+..
T Consensus 28 IG~~~a~~l~~~G~~vi~~~r~~~~~~~~ 56 (306)
T PRK06197 28 LGYETAAALAAKGAHVVLAVRNLDKGKAA 56 (306)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999999998775543
No 484
>PLN00198 anthocyanidin reductase; Provisional
Probab=68.15 E-value=9.9 Score=34.01 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=21.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV 25 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~ 25 (301)
+|+.++..|++.||+|.+..|+++.
T Consensus 21 IG~~l~~~L~~~g~~V~~~~r~~~~ 45 (338)
T PLN00198 21 LASLLIKLLLQKGYAVNTTVRDPEN 45 (338)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCC
Confidence 4899999999999999887777544
No 485
>PRK07904 short chain dehydrogenase; Provisional
Probab=67.98 E-value=6.1 Score=33.85 Aligned_cols=29 Identities=7% Similarity=0.197 Sum_probs=23.8
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhh-HHHH
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNV-MKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~-~~~l 29 (301)
+|.++|+.|+++| ++|++.+|++++ .+.+
T Consensus 20 iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~ 50 (253)
T PRK07904 20 IGLAICERYLKNAPARVVLAALPDDPRRDAA 50 (253)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCcchhHHHH
Confidence 5899999999985 899999999875 4444
No 486
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=67.82 E-value=12 Score=37.02 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=36.7
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh---------------------hHHHHHhCCCCCC--------CCHHHHHhcCCEEEE
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPTK--------ETPFEVAEASDVVIT 52 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~---------------------~~~~l~~~g~~~~--------~s~~e~~~~adiVi~ 52 (301)
|.+.|..|.+.||+|++|++++. ..+.+.+.|+.+. -+..+.....|.||+
T Consensus 339 GLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~~~~~~~Davil 418 (654)
T PRK12769 339 GLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLESLLEDYDAVFV 418 (654)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHHHHHhcCCEEEE
Confidence 67888999999999999998643 2233444454321 134444457888888
Q ss_pred ecCC
Q 022170 53 MLPS 56 (301)
Q Consensus 53 ~vp~ 56 (301)
++..
T Consensus 419 AtGa 422 (654)
T PRK12769 419 GVGT 422 (654)
T ss_pred eCCC
Confidence 8764
No 487
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=67.78 E-value=10 Score=31.77 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.1
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCCh
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNC 23 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~ 23 (301)
||+.+|.+|++.|. +++++|.+.
T Consensus 39 lGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 39 LGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999997 599999874
No 488
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.50 E-value=7.1 Score=33.98 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC 23 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~ 23 (301)
+|.++|+.|++.|++|++.+|+.
T Consensus 19 IG~aiA~~la~~G~~Vil~~r~~ 41 (274)
T PRK08415 19 IAYGIAKACFEQGAELAFTYLNE 41 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEecCH
Confidence 58899999999999999999885
No 489
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=67.42 E-value=6.4 Score=32.83 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=21.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~ 26 (301)
+|..++..|.++||+|+.+.|++...
T Consensus 10 iG~~l~~~l~~~g~~v~~~~~~~~~~ 35 (236)
T PF01370_consen 10 IGSALVRQLLKKGHEVIVLSRSSNSE 35 (236)
T ss_dssp HHHHHHHHHHHTTTEEEEEESCSTGG
T ss_pred HHHHHHHHHHHcCCcccccccccccc
Confidence 48999999999999998887766544
No 490
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=67.18 E-value=41 Score=26.57 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCeEEEEcCChh--hHHHHHhCCCCCCCCHHHHHhcCCEEEEecCC
Q 022170 3 FRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
..||..|++.|++|.+.|-|+. ....+.........+..+++.. |+||+=+|.
T Consensus 18 ~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~-d~viiD~p~ 72 (179)
T cd02036 18 ANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAG-DYILIDSPA 72 (179)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccC-CEEEEECCC
Confidence 4678888899999999988774 2333211111112244455443 999996663
No 491
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.01 E-value=7 Score=32.98 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=24.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+++.|++.|++|++.+|++++.+..
T Consensus 17 iG~~~a~~l~~~G~~vi~~~r~~~~~~~~ 45 (253)
T PRK08217 17 LGRAMAEYLAQKGAKLALIDLNQEKLEEA 45 (253)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58899999999999999999998766544
No 492
>PRK08589 short chain dehydrogenase; Validated
Probab=66.99 E-value=7.2 Score=33.72 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=23.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|.++|+.|++.|++|++.+|+ ++.+.+
T Consensus 18 IG~aia~~l~~~G~~vi~~~r~-~~~~~~ 45 (272)
T PRK08589 18 IGQASAIALAQEGAYVLAVDIA-EAVSET 45 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEeCc-HHHHHH
Confidence 5899999999999999999998 554443
No 493
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=66.96 E-value=6.1 Score=37.13 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=34.7
Q ss_pred CCeEEEEcCChhhHHHHHh--------CC----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 13 GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 13 G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+-+|..+|+++++.+.+.. .| +..+++.+|++++||+||..+.-.
T Consensus 29 ~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~~irvG 85 (437)
T cd05298 29 LRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFAQIRVG 85 (437)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEEEeeeC
Confidence 3578999999988754322 13 456789999999999999988754
No 494
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=66.91 E-value=6.1 Score=37.00 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=35.1
Q ss_pred CCeEEEEcCChhhHHHHHh--------CC----CCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 13 GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 13 G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
+-+|..+|+++++.+.+.. .| +..+++.++++++||+||..+.-..
T Consensus 29 ~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~~irvGg 86 (425)
T cd05197 29 ISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVINQFRVGG 86 (425)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEEeeecCC
Confidence 3578999999988764322 23 4557899999999999999987553
No 495
>PRK05650 short chain dehydrogenase; Provisional
Probab=66.53 E-value=7.7 Score=33.40 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..++..|++.|++|++.+|++++.+.+.
T Consensus 12 IG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 41 (270)
T PRK05650 12 LGRAIALRWAREGWRLALADVNEEGGEETL 41 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999987765543
No 496
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=66.52 E-value=7.4 Score=35.12 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=21.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCN 24 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~ 24 (301)
+|+.++..|.+.|++|+++||...
T Consensus 27 iG~~lv~~L~~~g~~V~~~d~~~~ 50 (348)
T PRK15181 27 IGSGLLEELLFLNQTVIGLDNFST 50 (348)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 589999999999999999998543
No 497
>PLN00015 protochlorophyllide reductase
Probab=66.47 E-value=7.4 Score=34.47 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|+++| ++|++.+|++++.+.+.
T Consensus 9 IG~aia~~l~~~G~~~V~~~~r~~~~~~~~~ 39 (308)
T PLN00015 9 LGLATAKALAETGKWHVVMACRDFLKAERAA 39 (308)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 5899999999999 99999999988776554
No 498
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.44 E-value=7.9 Score=32.53 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=25.1
Q ss_pred CcHHHHHHHHhCCCeEEEE-cCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVH-DVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~-dr~~~~~~~l~ 30 (301)
+|..++..|++.|++|++. +|++++.+.+.
T Consensus 17 iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~ 47 (247)
T PRK05565 17 IGRAIAELLAKEGAKVVIAYDINEEAAQELL 47 (247)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 5889999999999999988 99987765543
No 499
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=66.32 E-value=22 Score=31.92 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=24.1
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 35 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~ 35 (301)
|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 182 G~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 182 GCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 4444555555687 588889999998887777754
No 500
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.27 E-value=6.8 Score=34.51 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM 28 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~ 28 (301)
+|+.||..|++.|..+.+||+|++..++
T Consensus 50 lGr~ialefa~rg~~~vl~Din~~~~~e 77 (300)
T KOG1201|consen 50 LGRLIALEFAKRGAKLVLWDINKQGNEE 77 (300)
T ss_pred HHHHHHHHHHHhCCeEEEEeccccchHH
Confidence 5899999999999999999998775543
Done!