Query 022171
Match_columns 301
No_of_seqs 208 out of 1184
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 3.4E-18 1.2E-22 133.2 5.9 71 41-111 2-72 (82)
2 4h10_B Circadian locomoter out 99.7 4.3E-17 1.5E-21 124.3 5.4 62 41-102 4-65 (71)
3 4ati_A MITF, microphthalmia-as 99.7 1.4E-16 4.7E-21 132.0 7.1 72 35-106 17-91 (118)
4 1hlo_A Protein (transcription 99.6 1.2E-16 4.1E-21 123.5 5.2 71 41-111 8-79 (80)
5 1nkp_B MAX protein, MYC proto- 99.6 8.8E-17 3E-21 124.8 4.2 71 45-115 2-73 (83)
6 1a0a_A BHLH, protein (phosphat 99.6 1.7E-16 5.7E-21 118.3 2.9 54 45-98 2-61 (63)
7 1nkp_A C-MYC, MYC proto-oncoge 99.6 3.6E-16 1.2E-20 123.4 4.2 71 43-113 4-76 (88)
8 1an4_A Protein (upstream stimu 99.6 2.7E-16 9.2E-21 116.9 3.1 56 43-98 3-63 (65)
9 4h10_A ARYL hydrocarbon recept 99.6 4.5E-16 1.5E-20 119.2 2.2 57 40-96 4-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.5 4E-15 1.4E-19 115.6 4.9 69 46-114 2-72 (80)
11 3u5v_A Protein MAX, transcript 99.5 5.2E-15 1.8E-19 114.1 3.5 61 43-103 3-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.4 2.3E-13 8E-18 102.8 5.5 59 40-98 7-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.3 8.6E-13 2.9E-17 97.4 4.9 55 45-99 2-58 (60)
14 4f3l_A Mclock, circadian locom 99.1 2.8E-11 9.7E-16 114.3 5.8 59 40-98 7-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 2.4E-10 8.2E-15 109.3 4.4 57 40-96 8-67 (387)
16 2lfh_A DNA-binding protein inh 98.9 1.6E-10 5.4E-15 87.3 1.0 47 50-96 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.8 7.7E-09 2.6E-13 80.9 5.7 50 56-105 3-55 (83)
18 4aya_A DNA-binding protein inh 98.6 9.8E-08 3.4E-12 76.6 6.6 49 53-101 33-83 (97)
19 2wt7_A Proto-oncogene protein 56.3 9.9 0.00034 27.3 3.4 45 53-111 1-45 (63)
20 3muj_A Transcription factor CO 49.7 19 0.00066 30.2 4.6 37 58-94 94-133 (138)
21 3lap_A Arginine repressor; arg 44.1 4.7 0.00016 34.8 -0.1 20 261-280 39-58 (170)
22 1gd2_E Transcription factor PA 41.3 8.4 0.00029 28.7 1.0 19 89-107 29-47 (70)
23 1b4a_A Arginine repressor; hel 39.4 7.4 0.00025 32.7 0.5 25 259-283 22-46 (149)
24 1p3q_Q VPS9P, vacuolar protein 38.0 45 0.0015 23.7 4.3 24 51-74 3-26 (54)
25 1dh3_A Transcription factor CR 37.6 10 0.00035 26.8 0.9 27 89-115 22-48 (55)
26 1pd7_B MAD1; PAH2, SIN3, eukar 36.7 38 0.0013 20.7 3.2 20 77-96 1-20 (26)
27 2er8_A Regulatory protein Leu3 35.3 26 0.00089 24.7 2.8 22 88-109 48-69 (72)
28 3v4g_A Arginine repressor; vib 33.2 8.7 0.0003 33.5 -0.1 20 261-280 52-72 (180)
29 2dgc_A Protein (GCN4); basic d 27.3 19 0.00065 26.0 0.9 24 89-112 30-53 (63)
30 1hwt_C Protein (heme activator 26.3 36 0.0012 24.4 2.3 22 88-109 57-78 (81)
31 1pyi_A Protein (pyrimidine pat 25.7 1E+02 0.0034 22.7 4.8 22 88-109 47-68 (96)
32 1zme_C Proline utilization tra 25.4 38 0.0013 23.5 2.2 22 88-109 43-64 (70)
33 2wuj_A Septum site-determining 25.1 75 0.0026 22.2 3.7 28 82-109 27-54 (57)
34 1jnm_A Proto-oncogene C-JUN; B 24.9 22 0.00076 25.2 0.9 20 89-108 22-41 (62)
35 3fx7_A Putative uncharacterize 24.3 68 0.0023 25.2 3.6 39 59-106 49-87 (94)
36 2jee_A YIIU; FTSZ, septum, coi 23.4 47 0.0016 25.5 2.5 29 84-112 15-43 (81)
37 2ke4_A CDC42-interacting prote 20.7 1.3E+02 0.0045 23.4 4.7 30 80-109 60-89 (98)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.72 E-value=3.4e-18 Score=133.15 Aligned_cols=71 Identities=24% Similarity=0.422 Sum_probs=65.6
Q ss_pred cchhhhccCChHHHHHHHHHHHHHHHHhccCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHhhhhccccc
Q 022171 41 KASVIRSKHSVTEQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQDWSAE 111 (301)
Q Consensus 41 k~~~~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~~e 111 (301)
+...+|..|+.+||+||++||++|.+|+.+||+++.|++|++||.+||+||++|+.+++.|+.+.+.+...
T Consensus 2 k~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 2 SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999988899999999999999999999999999998877643
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.67 E-value=4.3e-17 Score=124.35 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=58.2
Q ss_pred cchhhhccCChHHHHHHHHHHHHHHHHhccCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHH
Q 022171 41 KASVIRSKHSVTEQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYE 102 (301)
Q Consensus 41 k~~~~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~~~K~dKasIL~~AI~YIk~Lq~~v~~Le 102 (301)
+...+|..|+++||+||++||++|.+|+.|||.+..|+||++||+.||+||++||.++.-|+
T Consensus 4 k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 4 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 56778999999999999999999999999999877899999999999999999999988775
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.65 E-value=1.4e-16 Score=132.02 Aligned_cols=72 Identities=26% Similarity=0.456 Sum_probs=53.7
Q ss_pred CCCCCccchhhhccCChHHHHHHHHHHHHHHHHhccCCCC---CCCCChhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 022171 35 DGKNSDKASVIRSKHSVTEQRRRSKINERFQILREIIPHS---DQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQ 106 (301)
Q Consensus 35 d~~~~~k~~~~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~---~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~ 106 (301)
+.+...+...+|..|+++||+||++||++|.+|+.|||.+ +.|++|++||.+||+||++||.+++.|+....
T Consensus 17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344446677899999999999999999999999999987 35899999999999999999999999987633
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.64 E-value=1.2e-16 Score=123.50 Aligned_cols=71 Identities=27% Similarity=0.484 Sum_probs=64.9
Q ss_pred cchhhhccCChHHHHHHHHHHHHHHHHhccCCCC-CCCCChhhhhHHHHHHHHHHHHHHHHHHhhhhccccc
Q 022171 41 KASVIRSKHSVTEQRRRSKINERFQILREIIPHS-DQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQDWSAE 111 (301)
Q Consensus 41 k~~~~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~-~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~~e 111 (301)
....+|..|+..||+||.+||++|..|+.+||.+ ..|++|++||..||+||++|+.+++.|+.+.+.|..+
T Consensus 8 ~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 8 SDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456899999999999999999999999999987 4699999999999999999999999999998877643
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.64 E-value=8.8e-17 Score=124.84 Aligned_cols=71 Identities=28% Similarity=0.501 Sum_probs=64.7
Q ss_pred hhccCChHHHHHHHHHHHHHHHHhccCCCC-CCCCChhhhhHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 022171 45 IRSKHSVTEQRRRSKINERFQILREIIPHS-DQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQDWSAEPTKL 115 (301)
Q Consensus 45 ~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~-~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~~e~~~l 115 (301)
+|..|+..||+||++||++|..|+.+||.+ ..|++|++||..||+||++|+.+++.|+.+.+.+..+...|
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999986 57999999999999999999999999999888887665444
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.61 E-value=1.7e-16 Score=118.29 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=49.7
Q ss_pred hhccCChHHHHHHHHHHHHHHHHhccCCCC------CCCCChhhhhHHHHHHHHHHHHHH
Q 022171 45 IRSKHSVTEQRRRSKINERFQILREIIPHS------DQKRDTASFLLEVIEYVQYLQEKV 98 (301)
Q Consensus 45 ~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~------~~K~dKasIL~~AI~YIk~Lq~~v 98 (301)
+|..|+++||+||++||++|.+|+.|||.+ ..|++||+||++||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 588999999999999999999999999975 368899999999999999999765
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=3.6e-16 Score=123.40 Aligned_cols=71 Identities=25% Similarity=0.354 Sum_probs=62.7
Q ss_pred hhhhccCChHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhhhHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 022171 43 SVIRSKHSVTEQRRRSKINERFQILREIIPHS--DQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQDWSAEPT 113 (301)
Q Consensus 43 ~~~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~--~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~~e~~ 113 (301)
..+|..|+..||+||++||++|..|+.+||.+ +.|++|++||..||+||++|+.+.+.+..+.+.+..+..
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~ 76 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999986 479999999999999999999999988877666655443
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=2.7e-16 Score=116.90 Aligned_cols=56 Identities=32% Similarity=0.494 Sum_probs=51.2
Q ss_pred hhhhccCChHHHHHHHHHHHHHHHHhccCCCCC-----CCCChhhhhHHHHHHHHHHHHHH
Q 022171 43 SVIRSKHSVTEQRRRSKINERFQILREIIPHSD-----QKRDTASFLLEVIEYVQYLQEKV 98 (301)
Q Consensus 43 ~~~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~~-----~K~dKasIL~~AI~YIk~Lq~~v 98 (301)
..+|..|+.+||+||++||++|.+|+.|||.+. .|++|++||.+||+||++||.++
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999983 38899999999999999999764
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.57 E-value=4.5e-16 Score=119.23 Aligned_cols=57 Identities=26% Similarity=0.402 Sum_probs=52.0
Q ss_pred ccchhhhccCChHHHHHHHHHHHHHHHHhccCCCC---CCCCChhhhhHHHHHHHHHHHH
Q 022171 40 DKASVIRSKHSVTEQRRRSKINERFQILREIIPHS---DQKRDTASFLLEVIEYVQYLQE 96 (301)
Q Consensus 40 ~k~~~~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~---~~K~dKasIL~~AI~YIk~Lq~ 96 (301)
.+...+|..|+++||+||++||++|.+|+.|||.| ..|+|||+||+.||+||+.|+.
T Consensus 4 ~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 4 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 36678999999999999999999999999999987 3799999999999999999873
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.54 E-value=4e-15 Score=115.64 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=62.3
Q ss_pred hccCChHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhhhHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 022171 46 RSKHSVTEQRRRSKINERFQILREIIPHS--DQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQDWSAEPTK 114 (301)
Q Consensus 46 r~~H~~~ERrRR~kIne~f~~Lr~lVP~~--~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~~e~~~ 114 (301)
|..|+..||+||..||++|..|+++||.+ +.|.+|+.||..|++||+.|+.+.+.|+.+.+.+..+...
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~ 72 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999975 4799999999999999999999999999888877655443
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.51 E-value=5.2e-15 Score=114.06 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=49.8
Q ss_pred hhhhccCChHHHHHHHHHHHHHHHHhccCCCC--CCCC-ChhhhhHHHHHHHHHHHHHHHHHHh
Q 022171 43 SVIRSKHSVTEQRRRSKINERFQILREIIPHS--DQKR-DTASFLLEVIEYVQYLQEKVQKYEV 103 (301)
Q Consensus 43 ~~~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~--~~K~-dKasIL~~AI~YIk~Lq~~v~~Le~ 103 (301)
..+|..|+..||+||++||++|.+|+.+||.+ ..|. +|+.||..||+||++|++++++++.
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999953 3455 8999999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.40 E-value=2.3e-13 Score=102.82 Aligned_cols=59 Identities=27% Similarity=0.407 Sum_probs=53.7
Q ss_pred ccchhhhccCChHHHHHHHHHHHHHHHHhccCCCC-CCCCChhhhhHHHHHHHHHHHHHH
Q 022171 40 DKASVIRSKHSVTEQRRRSKINERFQILREIIPHS-DQKRDTASFLLEVIEYVQYLQEKV 98 (301)
Q Consensus 40 ~k~~~~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~-~~K~dKasIL~~AI~YIk~Lq~~v 98 (301)
.....+|..|+..||+|+..||+.|..||.+||.. +.|++|+.||..||+||.+|++.+
T Consensus 7 ~~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 7 TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999975 689999999999999999999765
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.33 E-value=8.6e-13 Score=97.38 Aligned_cols=55 Identities=25% Similarity=0.318 Sum_probs=50.9
Q ss_pred hhccCChHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhhhHHHHHHHHHHHHHHH
Q 022171 45 IRSKHSVTEQRRRSKINERFQILREIIPHS--DQKRDTASFLLEVIEYVQYLQEKVQ 99 (301)
Q Consensus 45 ~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~--~~K~dKasIL~~AI~YIk~Lq~~v~ 99 (301)
+|..|+..||+|+..||+.|..||.+||.. +.|++|+.||..||+||.+|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999975 6899999999999999999998763
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.14 E-value=2.8e-11 Score=114.32 Aligned_cols=59 Identities=24% Similarity=0.426 Sum_probs=43.7
Q ss_pred ccchhhhccCChHHHHHHHHHHHHHHHHhccCCCCCCCCChhhhhHHHHHHHHHHHHHH
Q 022171 40 DKASVIRSKHSVTEQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQEKV 98 (301)
Q Consensus 40 ~k~~~~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~~~K~dKasIL~~AI~YIk~Lq~~v 98 (301)
++...+|..|+.+||+||++||+.|.+|+.|||....|+||++||+.||+||+.|+...
T Consensus 7 ~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 7 DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 36677899999999999999999999999999965689999999999999999998643
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.97 E-value=2.4e-10 Score=109.35 Aligned_cols=57 Identities=26% Similarity=0.402 Sum_probs=50.2
Q ss_pred ccchhhhccCChHHHHHHHHHHHHHHHHhccCCCC---CCCCChhhhhHHHHHHHHHHHH
Q 022171 40 DKASVIRSKHSVTEQRRRSKINERFQILREIIPHS---DQKRDTASFLLEVIEYVQYLQE 96 (301)
Q Consensus 40 ~k~~~~r~~H~~~ERrRR~kIne~f~~Lr~lVP~~---~~K~dKasIL~~AI~YIk~Lq~ 96 (301)
.|...+|..|+.+||+||++||+.|.+|+.|||.+ ..|+||++||+.||+|||.|+.
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 36677899999999999999999999999999953 4799999999999999999874
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.93 E-value=1.6e-10 Score=87.33 Aligned_cols=47 Identities=23% Similarity=0.353 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhhhHHHHHHHHHHHH
Q 022171 50 SVTEQRRRSKINERFQILREIIPHS--DQKRDTASFLLEVIEYVQYLQE 96 (301)
Q Consensus 50 ~~~ERrRR~kIne~f~~Lr~lVP~~--~~K~dKasIL~~AI~YIk~Lq~ 96 (301)
+..||+|+..||++|..||.+||.. ++|++|++||..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3558999999999999999999975 6899999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.77 E-value=7.7e-09 Score=80.89 Aligned_cols=50 Identities=28% Similarity=0.446 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhccCCCC---CCCCChhhhhHHHHHHHHHHHHHHHHHHhhh
Q 022171 56 RRSKINERFQILREIIPHS---DQKRDTASFLLEVIEYVQYLQEKVQKYEVSY 105 (301)
Q Consensus 56 RR~kIne~f~~Lr~lVP~~---~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~ 105 (301)
-|.+||++|.+|..|||.+ +.|.+|+.||..||+||++||..++.+....
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999975 4689999999999999999999888777553
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.56 E-value=9.8e-08 Score=76.65 Aligned_cols=49 Identities=22% Similarity=0.370 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCC--CCCCChhhhhHHHHHHHHHHHHHHHHH
Q 022171 53 EQRRRSKINERFQILREIIPHS--DQKRDTASFLLEVIEYVQYLQEKVQKY 101 (301)
Q Consensus 53 ERrRR~kIne~f~~Lr~lVP~~--~~K~dKasIL~~AI~YIk~Lq~~v~~L 101 (301)
||.|=..||+.|..||.+||.. ++|++|+++|..||+||..|++.++.-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 5677789999999999999975 689999999999999999999887653
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.27 E-value=9.9 Score=27.30 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHhhhhccccc
Q 022171 53 EQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQDWSAE 111 (301)
Q Consensus 53 ERrRR~kIne~f~~Lr~lVP~~~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~~e 111 (301)
||++|.+..+++.+.++- ..-.+|+..|+.++..|+.++..|..+
T Consensus 1 Ekr~rrrerNR~AA~rcR--------------~rKk~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR--------------NRRRELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777777652 122356666666666666655555443
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=49.65 E-value=19 Score=30.22 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhccCCCC---CCCCChhhhhHHHHHHHHHH
Q 022171 58 SKINERFQILREIIPHS---DQKRDTASFLLEVIEYVQYL 94 (301)
Q Consensus 58 ~kIne~f~~Lr~lVP~~---~~K~dKasIL~~AI~YIk~L 94 (301)
-.|.-.|+.|..+||.- ..++.|-.||.+|-++.+.|
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 35889999999999953 46899999999999998876
No 21
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=44.14 E-value=4.7 Score=34.80 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=18.1
Q ss_pred HHHHHHHHcCCCCCCCeeEE
Q 022171 261 NLTQALESAGIDLSQANISV 280 (301)
Q Consensus 261 ~lt~al~~sgvdlsqa~isv 280 (301)
-|-++|+..|++.+||+||=
T Consensus 39 EL~~~L~~~Gi~vTQATlSR 58 (170)
T 3lap_A 39 ELAALLAAEGIEVTQATLSR 58 (170)
T ss_dssp HHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHcCCCcCchhHHH
Confidence 57789999999999999994
No 22
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=41.30 E-value=8.4 Score=28.73 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 022171 89 EYVQYLQEKVQKYEVSYQD 107 (301)
Q Consensus 89 ~YIk~Lq~~v~~Le~~~~~ 107 (301)
.||+.|+.+|..|+.....
T Consensus 29 ~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444333
No 23
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=39.39 E-value=7.4 Score=32.69 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCCCCCCeeEEEEe
Q 022171 259 LNNLTQALESAGIDLSQANISVQID 283 (301)
Q Consensus 259 l~~lt~al~~sgvdlsqa~isvqi~ 283 (301)
..-|.+.|+..|++.|||+||=-|.
T Consensus 22 q~eL~~~L~~~G~~VtqaTisRDL~ 46 (149)
T 1b4a_A 22 QDELVDRLREAGFNVTQATVSRDIK 46 (149)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 3568899999999999999996554
No 24
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=38.04 E-value=45 Score=23.67 Aligned_cols=24 Identities=8% Similarity=0.333 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCC
Q 022171 51 VTEQRRRSKINERFQILREIIPHS 74 (301)
Q Consensus 51 ~~ERrRR~kIne~f~~Lr~lVP~~ 74 (301)
+++|-+|...++.+..|+.+.|+.
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC
Confidence 568889999999999999999997
No 25
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=37.59 E-value=10 Score=26.75 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccc
Q 022171 89 EYVQYLQEKVQKYEVSYQDWSAEPTKL 115 (301)
Q Consensus 89 ~YIk~Lq~~v~~Le~~~~~l~~e~~~l 115 (301)
.||..|+.+|..|+.++..|..+...|
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889888988888877776555443
No 26
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=36.67 E-value=38 Score=20.73 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=16.5
Q ss_pred CCChhhhhHHHHHHHHHHHH
Q 022171 77 KRDTASFLLEVIEYVQYLQE 96 (301)
Q Consensus 77 K~dKasIL~~AI~YIk~Lq~ 96 (301)
|+..+.+|-+|-+||...+.
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 45678899999999997765
No 27
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=35.31 E-value=26 Score=24.72 Aligned_cols=22 Identities=0% Similarity=0.104 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccc
Q 022171 88 IEYVQYLQEKVQKYEVSYQDWS 109 (301)
Q Consensus 88 I~YIk~Lq~~v~~Le~~~~~l~ 109 (301)
-.||..|+.+|..|+.....+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999887664
No 28
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=33.20 E-value=8.7 Score=33.53 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCCC-CCCeeEE
Q 022171 261 NLTQALESAGIDL-SQANISV 280 (301)
Q Consensus 261 ~lt~al~~sgvdl-sqa~isv 280 (301)
-|-++|+..|++. +||+||=
T Consensus 52 EL~~~L~~~Gi~viTQATvSR 72 (180)
T 3v4g_A 52 EIVEALKQEGFENINQSKVSR 72 (180)
T ss_dssp HHHHHHHHTTCTTCCHHHHHH
T ss_pred HHHHHHHHCCCcccCHHHHHH
Confidence 5778999999999 9999994
No 29
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.30 E-value=19 Score=26.02 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhhhcccccc
Q 022171 89 EYVQYLQEKVQKYEVSYQDWSAEP 112 (301)
Q Consensus 89 ~YIk~Lq~~v~~Le~~~~~l~~e~ 112 (301)
+||..|+.+|..|+.++..|..+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666665555444
No 30
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.25 E-value=36 Score=24.38 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhhccc
Q 022171 88 IEYVQYLQEKVQKYEVSYQDWS 109 (301)
Q Consensus 88 I~YIk~Lq~~v~~Le~~~~~l~ 109 (301)
-.||..|+++|..||.....+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999998766553
No 31
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.66 E-value=1e+02 Score=22.70 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccc
Q 022171 88 IEYVQYLQEKVQKYEVSYQDWS 109 (301)
Q Consensus 88 I~YIk~Lq~~v~~Le~~~~~l~ 109 (301)
-.||+.|+++++.||.....+.
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4699999999999998876654
No 32
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=25.35 E-value=38 Score=23.54 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhhhccc
Q 022171 88 IEYVQYLQEKVQKYEVSYQDWS 109 (301)
Q Consensus 88 I~YIk~Lq~~v~~Le~~~~~l~ 109 (301)
-.||..|+.++..|+.....+.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888887766554
No 33
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.11 E-value=75 Score=22.23 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhccc
Q 022171 82 SFLLEVIEYVQYLQEKVQKYEVSYQDWS 109 (301)
Q Consensus 82 sIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 109 (301)
.+|+..++-+..|.+++..|+.+...++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999998877664
No 34
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.90 E-value=22 Score=25.22 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 022171 89 EYVQYLQEKVQKYEVSYQDW 108 (301)
Q Consensus 89 ~YIk~Lq~~v~~Le~~~~~l 108 (301)
+||..|+.++..|+.++..|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L 41 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSEL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 35
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.32 E-value=68 Score=25.18 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=26.4
Q ss_pred HHHHHHHHHhccCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 022171 59 KINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEVSYQ 106 (301)
Q Consensus 59 kIne~f~~Lr~lVP~~~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~ 106 (301)
++.+.|..|.+.+-. ..+.|=+||.+|.++++.|+..+-
T Consensus 49 kFee~fe~l~s~l~~---------f~e~a~e~vp~L~~~i~vle~~~~ 87 (94)
T 3fx7_A 49 KFSEVLDNLKSTFNE---------FDEAAQEQIAWLKERIRVLEEDYL 87 (94)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------HHHhhHHHhHHHHHHHHHhHHHHH
Confidence 555555555443321 234677999999999999998764
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.42 E-value=47 Score=25.46 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 022171 84 LLEVIEYVQYLQEKVQKYEVSYQDWSAEP 112 (301)
Q Consensus 84 L~~AI~YIk~Lq~~v~~Le~~~~~l~~e~ 112 (301)
+..||+-|.-||..+.+|+.++..+..+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888887766655433
No 37
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.74 E-value=1.3e+02 Score=23.42 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhccc
Q 022171 80 TASFLLEVIEYVQYLQEKVQKYEVSYQDWS 109 (301)
Q Consensus 80 KasIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 109 (301)
-..-|.++..-|..|+..+.+++.-..++.
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356688888889999999999888766654
Done!