Query 022172
Match_columns 301
No_of_seqs 199 out of 874
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:34:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00228 hypothetical protein; 100.0 8.4E-51 1.8E-55 362.7 18.0 171 116-298 5-180 (191)
2 COG1678 Putative transcription 100.0 6.5E-48 1.4E-52 341.8 17.5 170 117-298 9-183 (194)
3 PF02622 DUF179: Uncharacteriz 100.0 8.5E-46 1.8E-50 321.4 12.0 158 129-296 1-161 (161)
4 PF11097 DUF2883: Protein of u 42.0 23 0.0005 27.0 2.3 35 246-281 6-40 (75)
5 PF02059 IL3: Interleukin-3; 33.4 26 0.00055 29.6 1.5 13 69-81 101-113 (118)
6 PF06613 KorB_C: KorB C-termin 28.9 44 0.00095 25.0 2.0 22 141-163 8-30 (60)
7 PF08115 Toxin_28: SFI toxin f 17.2 1.4E+02 0.003 19.7 2.3 25 139-163 6-30 (35)
8 PF14237 DUF4339: Domain of un 14.8 1.2E+02 0.0026 20.4 1.7 28 229-256 17-44 (45)
9 PF05391 Lsm_interact: Lsm int 14.4 1.1E+02 0.0024 18.3 1.2 15 60-74 3-17 (21)
10 PF13830 DUF4192: Domain of un 13.3 1.1E+02 0.0024 29.3 1.6 37 123-161 2-38 (324)
No 1
>PRK00228 hypothetical protein; Validated
Probab=100.00 E-value=8.4e-51 Score=362.73 Aligned_cols=171 Identities=31% Similarity=0.512 Sum_probs=147.0
Q ss_pred ccCCCCCCcEEEecCCCCCCCCccceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhhccc---CCCCCCCeEecCccc
Q 022172 116 TIHEPEKGCLLIATEKLDGVHIFERTVILILSMEPMGPSGIILNRPSLMSIKEMRSTVLDAA---GTFSDRPLFFGGPLE 192 (301)
Q Consensus 116 ~~~~p~~G~lLIA~P~L~d~~~F~RSVVLL~eH~e~Ga~GlILNRP~~~~l~~ll~~~~d~~---~~~~~~pv~~GGPV~ 192 (301)
....+++|+||||+|.|.|+ +|+|||||||+|+++||||||||||++++++++++++.... ..+.+.|||+||||+
T Consensus 5 ~~~~~~~G~lLiA~P~l~d~-~F~rSVIll~eH~~~Ga~GlIlNrp~~~~l~~ll~~~~~~~~~~~~~~~~~v~~GGPV~ 83 (191)
T PRK00228 5 PEPMNLQGQLLIAMPDLQDP-NFARSVIYICEHNENGAMGLVINRPSELDVAEVLPQLDILATPPEIRLDQPVFLGGPVQ 83 (191)
T ss_pred ccCccCCCeEEEeCCCCCCC-CcCccEEEEEEeCCCCceEEEEcCCCCCCHHHHHHHhcccccCcccccCCeEEeCCCcc
Confidence 34678999999999999975 99999999999999999999999999999999998873211 123468999999999
Q ss_pred c--CeEEEccCCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhcCCCCCcEEEEEeecCCChhHHHHHHHcCCeEE
Q 022172 193 E--GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTV 270 (301)
Q Consensus 193 ~--~~vLh~~~~~~~~~~~~~~~~eI~~Gl~~g~~~~i~~a~elv~~g~~~p~d~rfflGYaGW~~GQLE~EI~~g~W~v 270 (301)
+ +|+||....... .+.+|.+|||+|++.++ ++.+..+ .++++||||+|||||++||||+||++|+|++
T Consensus 84 ~~~~~~Lh~~~~~~~------~s~~v~~gl~l~~s~d~---l~~l~~~-~~~~~~~~flGyaGW~~gQLe~Ei~~g~W~v 153 (191)
T PRK00228 84 TDRGFVLHSPRDGFD------SSIRVSDGLVLTTSRDV---LEALATG-PGPEGVLVALGYAGWGAGQLEQEIEENAWLT 153 (191)
T ss_pred CCcEEEEEECCCcCC------CceeecCCeEEeCCHHH---HHHHhcC-CCCCcEEEEEEECCCCHHHHHHHHHcCCeEE
Confidence 6 678886532211 24799999999998774 4555554 5689999999999999999999999999999
Q ss_pred ccCCCCeeecCCCchhHHHHHHHhcCCC
Q 022172 271 AACSPSVIGLESGTLGLWEELLWLMGRR 298 (301)
Q Consensus 271 a~as~~~i~f~~~~~~LW~evL~~~Gg~ 298 (301)
++|++++| |+++++++|+++|+++|++
T Consensus 154 ~~a~~~~l-f~~~~~~~W~~~l~~~G~~ 180 (191)
T PRK00228 154 APADPEIL-FDTPPEDRWRAALRRLGID 180 (191)
T ss_pred ccCCHHHh-cCCCHHHHHHHHHHHhCCC
Confidence 99999999 9999999999999999997
No 2
>COG1678 Putative transcriptional regulator [Transcription]
Probab=100.00 E-value=6.5e-48 Score=341.76 Aligned_cols=170 Identities=27% Similarity=0.486 Sum_probs=147.4
Q ss_pred cCCCCCCcEEEecCCCCCCCCccceEEEEEEeCCCCcEEEEecCCCC-ccHHHHHHhhhcccCC--CCCCCeEecCcccc
Q 022172 117 IHEPEKGCLLIATEKLDGVHIFERTVILILSMEPMGPSGIILNRPSL-MSIKEMRSTVLDAAGT--FSDRPLFFGGPLEE 193 (301)
Q Consensus 117 ~~~p~~G~lLIA~P~L~d~~~F~RSVVLL~eH~e~Ga~GlILNRP~~-~~l~~ll~~~~d~~~~--~~~~pv~~GGPV~~ 193 (301)
....++|+||||||.|.|+ +|+||||||||||++||||||||||++ ++++++++.+ ++... ..+.+||.||||++
T Consensus 9 ~~~~l~g~fLiAmP~m~d~-~F~RSVvyiceH~e~GamGliiNrp~~~~~~~~l~~~~-~~~~~~~~~~~~v~~GGPv~~ 86 (194)
T COG1678 9 AQMNLQGHFLVAMPDMQDP-IFARSVVYICEHNENGAMGLIINRPSETLTLAELLEKL-KLEIKILRLPKPVYLGGPVQR 86 (194)
T ss_pred hhcccCCcEEEecCCCCCC-ccceeEEEEEEeCCCCcEEEEecCCccccCHHHHHHHh-cccccccccCceEEeCCcccc
Confidence 3567899999999999976 999999999999999999999999999 9999998765 22221 34789999999996
Q ss_pred --CeEEEccCCCCCccCCCcceeeeecceeeccchhhhhhHHHHHhcCCCCCcEEEEEeecCCChhHHHHHHHcCCeEEc
Q 022172 194 --GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVA 271 (301)
Q Consensus 194 --~~vLh~~~~~~~~~~~~~~~~eI~~Gl~~g~~~~i~~a~elv~~g~~~p~d~rfflGYaGW~~GQLE~EI~~g~W~va 271 (301)
+|+||....... . .+.+|.++++++++.++ .+.+..| .+|+++++++|||||++||||+||++|.|+++
T Consensus 87 ~rgfvLh~~~~~~~---~--ssl~v~~~~~lt~s~Dv---l~~i~~~-~~p~~~l~~lGYagW~~GQLE~Ei~~n~WL~~ 157 (194)
T COG1678 87 DRGFVLHSSDYGAF---Q--SSLRVSDGLALTTSLDV---LEAIAAG-KGPEKALVALGYAGWAAGQLEEEIEDNDWLTV 157 (194)
T ss_pred cceEEEEeCCCCCC---c--ccceecCCEEEEecHhH---HHHHhcc-CCCCceEEEEEecccccchhHHHHhhCCEEEe
Confidence 799998544221 1 14789999999999884 5666665 68999999999999999999999999999999
Q ss_pred cCCCCeeecCCCchhHHHHHHHhcCCC
Q 022172 272 ACSPSVIGLESGTLGLWEELLWLMGRR 298 (301)
Q Consensus 272 ~as~~~i~f~~~~~~LW~evL~~~Gg~ 298 (301)
+|++++| |..+++++|.++|+++|.+
T Consensus 158 pA~~~~l-F~~~~edrw~~al~~lGi~ 183 (194)
T COG1678 158 PADPEIL-FDTPPEDRWARALRRLGID 183 (194)
T ss_pred cCCHHHh-cCCCHHHHHHHHHHHcCCC
Confidence 9999999 9999999999999999987
No 3
>PF02622 DUF179: Uncharacterized ACR, COG1678; InterPro: IPR003774 This entry describes proteins of unknown function.; PDB: 2DO8_A 2EW0_A 2GS5_A 2HRX_A 2AJ2_A 2HAF_A 2GZO_A.
Probab=100.00 E-value=8.5e-46 Score=321.37 Aligned_cols=158 Identities=37% Similarity=0.682 Sum_probs=132.6
Q ss_pred cCCCCCCCCccceEEEEEEeCCCCcEEEEecCCCCccHHHHHHhhhccc-CCCCCCCeEecCcccc--CeEEEccCCCCC
Q 022172 129 TEKLDGVHIFERTVILILSMEPMGPSGIILNRPSLMSIKEMRSTVLDAA-GTFSDRPLFFGGPLEE--GLFLVSPKGGGD 205 (301)
Q Consensus 129 ~P~L~d~~~F~RSVVLL~eH~e~Ga~GlILNRP~~~~l~~ll~~~~d~~-~~~~~~pv~~GGPV~~--~~vLh~~~~~~~ 205 (301)
||.|.|+ +|+|||||||+|+++||+|||||||++++++++++++.... .++.+.|||+||||+. .++||.....
T Consensus 1 ~P~l~d~-~F~~sVVli~~h~~~Ga~GlILNrp~~~~l~~~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~Lh~~~~~-- 77 (161)
T PF02622_consen 1 MPSLNDP-NFHRSVVLICEHDEEGAMGLILNRPTNITLSELLEELELLPISAFSDQPVYFGGPVEPDRGFVLHSIPDL-- 77 (161)
T ss_dssp -TTSTST-TTTTEEEEEEEEETTEEEEEESSSEEEEEHHHHHHHTTCCSSTTCCCSEEEES-SEEEEEEEEEEEC-TT--
T ss_pred CCCCCCC-CcCceEEEEEEECCCCcEEEEecCCCCCCHHHHHHhhccccccccccCeEEECCCcccCeEEEEEECCCC--
Confidence 7999986 99999999999999999999999999999999988764322 2367899999999997 4667765331
Q ss_pred ccCCCcceeeeecceeeccchhhhhhHHHHHhcCCCCCcEEEEEeecCCChhHHHHHHHcCCeEEccCCCCeeecCCCch
Q 022172 206 EVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTL 285 (301)
Q Consensus 206 ~~~~~~~~~eI~~Gl~~g~~~~i~~a~elv~~g~~~p~d~rfflGYaGW~~GQLE~EI~~g~W~va~as~~~i~f~~~~~ 285 (301)
.. ..+.+|.+|+|+|++.++ +.++|++| .++.+||||+|||||++||||+||++|+|++++|++++| |+++++
T Consensus 78 -~~--~~s~~v~~gl~~~~~~~~--~~~~i~~~-~~~~~~~~f~GysgW~~gQLe~Ei~~g~W~~~~a~~~~v-f~~~~~ 150 (161)
T PF02622_consen 78 -EG--PGSIEVSPGLYLGGSLDA--LEALIAEG-AGPEDFRFFLGYSGWGPGQLEDEIARGSWLVAPASPDIV-FETPPE 150 (161)
T ss_dssp -GC--SSEEECSSSEEEEESTHH--HHHHHTST-TSCSSEEEEEEEEEECTTHHHHHHHTTTEEEEE--HHHH-CTSTSS
T ss_pred -CC--CCceEEeCCeEEeccHHH--HHHHHhCC-CCCceEEEEEEECCCCHHHHHHHHHcCCEEEeeCCHHHh-hCCCHH
Confidence 01 125799999999998774 44568888 889999999999999999999999999999999999999 999999
Q ss_pred hHHHHHHHhcC
Q 022172 286 GLWEELLWLMG 296 (301)
Q Consensus 286 ~LW~evL~~~G 296 (301)
.+|+++|++||
T Consensus 151 ~~W~~~l~~~G 161 (161)
T PF02622_consen 151 ELWREALRRLG 161 (161)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHHCc
Confidence 99999999998
No 4
>PF11097 DUF2883: Protein of unknown function (DUF2883); InterPro: IPR020112 This group of proteins currently have no known function and are found primarily in the T4-like bacteriophages.
Probab=41.97 E-value=23 Score=26.97 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=23.0
Q ss_pred EEEEeecCCChhHHHHHHHcCCeEEccCCCCeeecC
Q 022172 246 RFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLE 281 (301)
Q Consensus 246 rfflGYaGW~~GQLE~EI~~g~W~va~as~~~i~f~ 281 (301)
.+++||-||.+.-||+=|.+ .=.|.+|+---+-|.
T Consensus 6 ~VYLg~pg~p~nKle~LMlE-LRTV~~~sGlefrfq 40 (75)
T PF11097_consen 6 DVYLGYPGLPPNKLEGLMLE-LRTVGRSSGLEFRFQ 40 (75)
T ss_pred eEEEeCCCCChHHHHHHHHH-HHhccccCCceeecc
Confidence 58999999999999854332 334666664333244
No 5
>PF02059 IL3: Interleukin-3; InterPro: IPR002183 Interleukin-3 (IL3) is a cytokine that regulates blood-cell production by controlling the production, differentiation and function of granulocytes and macrophages [, ]. The protein, which exists in vivo as a monomer, is produced in activated T-cells and mast cells [, ], and is activated by the cleavage of an N-terminal signal sequence []. IL3 is produced by T-lymphocytes and T-lymphomas only after stimulation with antigens, mitogens, or chemical activators such as phorbol esters. However, IL3 is constitutively expressed in the myelomonocytic leukaemia cell line WEHI-3B []. It is thought that the genetic change of the cell line to constitutive production of IL3 is the key event in development of this leukaemia [].; GO: 0005135 interleukin-3 receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 2L3O_A 1JLI_A.
Probab=33.36 E-value=26 Score=29.56 Aligned_cols=13 Identities=46% Similarity=0.963 Sum_probs=10.8
Q ss_pred CchhHHHHHHHhh
Q 022172 69 DADWRSFRARLVA 81 (301)
Q Consensus 69 ~~dWR~FRA~Lv~ 81 (301)
++||-+||.+|..
T Consensus 101 ~~d~~DFr~KL~~ 113 (118)
T PF02059_consen 101 DGDWGDFRKKLKF 113 (118)
T ss_dssp SCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4699999999963
No 6
>PF06613 KorB_C: KorB C-terminal beta-barrel domain; InterPro: IPR010575 This domain is found in several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This family is found in conjunction with IPR003115 from INTERPRO.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1IGQ_B 1IGU_A.
Probab=28.91 E-value=44 Score=24.96 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=14.2
Q ss_pred eEEEEEEeCCCCcEEEEec-CCCC
Q 022172 141 TVILILSMEPMGPSGIILN-RPSL 163 (301)
Q Consensus 141 SVVLL~eH~e~Ga~GlILN-RP~~ 163 (301)
--|+.++||+. +--|+|| ||+.
T Consensus 8 Kaiv~V~~d~R-~arllLnrRps~ 30 (60)
T PF06613_consen 8 KAIVQVEHDGR-PARLLLNRRPSS 30 (60)
T ss_dssp SEEEEEEETTE-EEEE-TTB--SS
T ss_pred ccEEEEEECCc-hhhhhhccCCCc
Confidence 34677999966 6789999 5654
No 7
>PF08115 Toxin_28: SFI toxin family; InterPro: IPR012633 This family consists of the SFI family of spider toxins. This family of toxins might share structural, evolutionary and functional relationships with other small, highly structurally constrained spider neurotoxins. These toxins are highly selective agonists/antagonists of different voltage-dependent calcium channels and are extremely valuable reagents in the analysis of neuromuscular function.; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=17.18 E-value=1.4e+02 Score=19.74 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=20.5
Q ss_pred cceEEEEEEeCCCCcEEEEecCCCC
Q 022172 139 ERTVILILSMEPMGPSGIILNRPSL 163 (301)
Q Consensus 139 ~RSVVLL~eH~e~Ga~GlILNRP~~ 163 (301)
..||.||..||..|---|-.|-|..
T Consensus 6 detvcyi~n~n~~~G~CL~~~~~~A 30 (35)
T PF08115_consen 6 DETVCYIHNHNDCCGSCLCSNGPHA 30 (35)
T ss_pred cCcEEEEecCCCcccceeccCCccC
Confidence 4699999999998877788887753
No 8
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=14.80 E-value=1.2e+02 Score=20.44 Aligned_cols=28 Identities=11% Similarity=0.471 Sum_probs=23.3
Q ss_pred hhhHHHHHhcCCCCCcEEEEEeecCCCh
Q 022172 229 GCAAEMVKRNAVGPEDFRFFDGCCGWEK 256 (301)
Q Consensus 229 ~~a~elv~~g~~~p~d~rfflGYaGW~~ 256 (301)
+...+++++|.+.+..+..--|.+.|-|
T Consensus 17 ~el~~l~~~g~i~~~tlvw~~g~~~W~p 44 (45)
T PF14237_consen 17 EELRQLISSGEIDPDTLVWKEGMSDWKP 44 (45)
T ss_pred HHHHHHHHcCCCCCCCeEeCCChhhceE
Confidence 3467888999999999998889988864
No 9
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=14.43 E-value=1.1e+02 Score=18.28 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=11.2
Q ss_pred CCCCCCCCCCchhHH
Q 022172 60 SDDHHKPLIDADWRS 74 (301)
Q Consensus 60 ~~~~~~~~~~~dWR~ 74 (301)
..++..|..+.|.|.
T Consensus 3 ~~~~~~p~SNddFrk 17 (21)
T PF05391_consen 3 AATTAKPKSNDDFRK 17 (21)
T ss_pred CccccCccchHHHHH
Confidence 456788999988664
No 10
>PF13830 DUF4192: Domain of unknown function (DUF4192)
Probab=13.28 E-value=1.1e+02 Score=29.30 Aligned_cols=37 Identities=27% Similarity=0.254 Sum_probs=27.1
Q ss_pred CcEEEecCCCCCCCCccceEEEEEEeCCCCcEEEEecCC
Q 022172 123 GCLLIATEKLDGVHIFERTVILILSMEPMGPSGIILNRP 161 (301)
Q Consensus 123 G~lLIA~P~L~d~~~F~RSVVLL~eH~e~Ga~GlILNRP 161 (301)
+.||=+-|.|.|- +=++|||+|+=++ .+.+|.++=--
T Consensus 2 ~dLlA~iP~lLGF-~P~~SvVvv~l~~-~~~lg~v~R~D 38 (324)
T PF13830_consen 2 GDLLAAIPALLGF-HPEDSVVVVALRG-RGRLGPVARVD 38 (324)
T ss_pred HHHHHhhHHhcCC-CCCCcEEEEEecC-CCeEEEEEEec
Confidence 4566677888862 3368999999866 88899987543
Done!