BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022173
(301 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GT66|TIC40_PEA Protein TIC 40, chloroplastic OS=Pisum sativum GN=TIC40 PE=1 SV=1
Length = 436
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/313 (61%), Positives = 233/313 (74%), Gaps = 20/313 (6%)
Query: 1 MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTP------------YPAAS 48
MQQA K MM QMNTQN PF + AF G PFPFP P ASGP TP +AS
Sbjct: 128 MQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGFAGNQSQATSTRSAS 187
Query: 49 QPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNF 107
Q T+DIPATKVEAA A D+ VK E EVK EPKK AFVDVSPEET+QK++F+ F
Sbjct: 188 QSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDVSPEETVQKNAFERF 243
Query: 108 EDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQ 166
+DV E+SS K+A+ P + SQNG F G S +K L+VD LEK+MEDP VQ
Sbjct: 244 KDVDESSSFKEARAPAEASQNGTPFKQGFGDSPSSPSERKSA--LSVDALEKMMEDPTVQ 301
Query: 167 KMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAE 226
+MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M E+D R++D+LKNFDLNS +
Sbjct: 302 QMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSRMMDTLKNFDLNSPD 361
Query: 227 VKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSV 286
VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM+I+KYQNDKEVM V
Sbjct: 362 VKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPMSIVKYQNDKEVMDV 421
Query: 287 ITKIAELFPGVTG 299
KI+ELFPGV+G
Sbjct: 422 FNKISELFPGVSG 434
>sp|Q9FMD5|TIC40_ARATH Protein TIC 40, chloroplastic OS=Arabidopsis thaliana GN=TIC40 PE=1
SV=1
Length = 447
Score = 288 bits (737), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 177/314 (56%), Positives = 221/314 (70%), Gaps = 15/314 (4%)
Query: 1 MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRF--TMDIPA 58
MQ A+K MMNQMNTQN F N+ FP GSPFPFP PP + P + + T+D+ A
Sbjct: 134 MQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQSQSQSSGATVDVTA 193
Query: 59 TKVEAAT--------ATDVEGKK--EVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFE 108
TKVE A D+E K V ++ K+E K YAF D+SPEET ++S F N+
Sbjct: 194 TKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDISPEETTKESPFSNYA 253
Query: 109 DVKETSSSKDAQPPKDS-QNGA--AFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQV 165
+V ET+S K+ + +D QNGA A A F K G L+V+ LEK+MEDP V
Sbjct: 254 EVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGLSVEALEKMMEDPTV 313
Query: 166 QKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSA 225
QKMVYP LPEEMRNP +FK ML+NP+YR+QLQ+ML+ M SGE+D R+ D+LKNFDLNS
Sbjct: 314 QKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDKRMTDTLKNFDLNSP 373
Query: 226 EVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMS 285
EVKQQF QIGLTPEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NPMNI+KYQNDKEVM
Sbjct: 374 EVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMD 433
Query: 286 VITKIAELFPGVTG 299
V KI++LFPG+TG
Sbjct: 434 VFNKISQLFPGMTG 447
>sp|Q5ZLF0|F10A1_CHICK Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1
Length = 361
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELF 294
+ +++++PE+ Q P V AA + +QNP N+ KYQN+ +VMS+ITK++ F
Sbjct: 305 LNEILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKF 357
>sp|P50503|F10A1_RAT Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1
Length = 368
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
+ +++++PE+ Q P V A + +QNP N+ KYQN+ +VM++I+K++ F G
Sbjct: 312 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGG 366
>sp|P50502|F10A1_HUMAN Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2
Length = 369
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 37/55 (67%)
Query: 242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
+ +++++PE+ Q P V A + +QNP N+ KYQ++ +VM++I+K++ F G
Sbjct: 313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367
>sp|Q5RF31|F10A1_PONAB Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1
Length = 369
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 37/55 (67%)
Query: 242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
+ +++++PE+ Q P V A + +QNP N+ KYQ++ +VM++I+K++ F G
Sbjct: 313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367
>sp|Q99L47|F10A1_MOUSE Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1
Length = 371
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 37/55 (67%)
Query: 242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
+ +++++PE+ Q P V A + +QNP N+ KYQ++ +VM++I+K++ F G
Sbjct: 315 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGG 369
>sp|Q8NFI4|F10A5_HUMAN Putative protein FAM10A5 OS=Homo sapiens GN=ST13P5 PE=5 SV=1
Length = 369
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
+ +++++PE Q P V A + +QNP N+ KYQ++ +VM++I+K++ F G
Sbjct: 313 LNEILSDPEALAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367
>sp|Q93YR3|F10AL_ARATH FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670
PE=1 SV=1
Length = 441
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 243 TKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
+K++ +PE+ F P V AA+ + +NP N+ K+Q + +V VI K+ F G
Sbjct: 386 SKILNDPELMTAFSDPEVMAALQDVMKNPANLAKHQANPKVAPVIAKMMGKFAG 439
>sp|O94489|EF3_SCHPO Elongation factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=tef3 PE=1 SV=1
Length = 1047
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 151 LTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGE-F 209
+ +D + KL+EDPQV V P LP+ + K + +PE R +Q + + G
Sbjct: 273 VIIDNMSKLVEDPQV---VAPFLPKLLPGLYHIKDTIGDPECRSVVQRAITTLERVGNVV 329
Query: 210 DGRV--LDSLKNFDLNSAEVKQQFEQIGL-TPEEVITKMMAN 248
DG++ + + N ++ +K +I + T EEVI K +AN
Sbjct: 330 DGKIPEVSTAANPEVCLETLKAVLGEIKVPTNEEVIAKYVAN 371
>sp|Q9BSL1|UBAC1_HUMAN Ubiquitin-associated domain-containing protein 1 OS=Homo sapiens
GN=UBAC1 PE=1 SV=1
Length = 405
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Query: 175 EEMRNPAS--FKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLK-NFDLNSAEVKQQF 231
EE R+ + FK + + E+R + ++ M E G + V+D+L+ N + +A +
Sbjct: 268 EEARDELTEIFKKIRRKREFRADARAVISLM-EMGFDEKEVIDALRVNNNQQNAACEWLL 326
Query: 232 EQIGLTPEEV----------ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDK 281
+PEE+ ++ NP + LG +P+ A + +NP+N ++ ND
Sbjct: 327 GDRKPSPEELDKGIDPDSPLFQAILDNPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDP 386
Query: 282 EVMSVITKIAELFPGVTGT 300
E V+ +I+ +F + T
Sbjct: 387 ETGPVMLQISRIFQTLNRT 405
>sp|Q5XIR9|UBAC1_RAT Ubiquitin-associated domain-containing protein 1 OS=Rattus
norvegicus GN=Ubac1 PE=2 SV=1
Length = 409
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Query: 175 EEMRNPAS--FKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLK-NFDLNSAEVKQQF 231
EE R+ + FK + + E+R + ++ M E G + V+D+L+ N + +A +
Sbjct: 272 EESRDELTEIFKKIRRKKEFRADARAVISLM-EMGFDEKEVIDALRVNNNQQNAACEWLL 330
Query: 232 EQIGLTPEEV----------ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDK 281
+PEE+ ++ NP + LG +P+ A + +NP+N ++ ND
Sbjct: 331 GDRKPSPEELDQGIDPNSPLFQAILDNPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDP 390
Query: 282 EVMSVITKIAELFPGVTGT 300
E V+ +I+ +F + T
Sbjct: 391 ETGPVMLQISRIFQTLNRT 409
>sp|Q8VDI7|UBAC1_MOUSE Ubiquitin-associated domain-containing protein 1 OS=Mus musculus
GN=Ubac1 PE=2 SV=2
Length = 409
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Query: 175 EEMRNPAS--FKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLK-NFDLNSAEVKQQF 231
EE R+ + FK + + E+R + ++ M E G + V+D+L+ N + +A +
Sbjct: 272 EESRDELTEIFKKIRRKKEFRADARAVISLM-EMGFDEKEVIDALRVNNNQQNAACEWLL 330
Query: 232 EQIGLTPEEV----------ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDK 281
+PEE+ ++ NP + LG +P+ A + +NP+N ++ ND
Sbjct: 331 GDRKPSPEELDQGIDPNSPLFQAILDNPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDP 390
Query: 282 EVMSVITKIAELFPGVTGT 300
E V+ +I+ +F + T
Sbjct: 391 ETGPVMLQISRIFQTLNRT 409
>sp|Q28DG7|UBAC1_XENTR Ubiquitin-associated domain-containing protein 1 OS=Xenopus
tropicalis GN=ubac1 PE=2 SV=1
Length = 406
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 245 MMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGT 300
++ NP + LG +P+ A + +NP+N ++ ND E V+ +I+ +F + T
Sbjct: 351 ILDNPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT 406
>sp|Q5ZJI9|UBAC1_CHICK Ubiquitin-associated domain-containing protein 1 OS=Gallus gallus
GN=UBAC1 PE=2 SV=1
Length = 408
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 245 MMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGT 300
++ NP + LG +P+ A + +NP+N ++ ND E V+ +I+ +F + T
Sbjct: 353 ILENPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT 408
>sp|P15705|STI1_YEAST Heat shock protein STI1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=STI1 PE=1 SV=1
Length = 589
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 237 TPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
TPEE + M +PE+A Q P +Q+ + + QNP + ++ + EV I + + G
Sbjct: 526 TPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTL--IAAG 583
Query: 297 VTGT 300
+ T
Sbjct: 584 IIRT 587
>sp|P30598|CHS1_USTMA Chitin synthase 1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=CHS1 PE=3 SV=2
Length = 939
Score = 35.8 bits (81), Expect = 0.44, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Query: 15 QNKPFGNAAFPQGSPFP-FPNPPASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKK 73
Q+ P P +P +P+ + P P+ AA P F PAT AT T E K
Sbjct: 49 QDDPLRQPGAPYANPAGGYPSSASMNPENPFYAAENPSFQTLAPATSEGHATYTYEEDKI 108
Query: 74 EVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNY 133
+ T+ +E ++ S +S F SS A P+DS + A+
Sbjct: 109 PL---TDSADEKYGFSQNGHSTYNLASQSGFPPSTPCGGPSSYSSALGPEDSASQVAWAK 165
Query: 134 NAGSPFGGQSAK 145
+P G + K
Sbjct: 166 RQQAPKRGLTKK 177
>sp|Q9USI5|STI1_SCHPO Heat shock protein sti1 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sti1 PE=3 SV=1
Length = 591
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 194 KQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQI---------GLTPEEVITK 244
K + +D E+ E D R ++ KN E++ Q + T EE + +
Sbjct: 481 KDYNKCIDACNEASEVDRREPNTGKNL----REIESQLSKCMSAMASQRQNETEEETMAR 536
Query: 245 MMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKI 290
+ +PE+ Q P +QA + + +NP ++++ + V S I K+
Sbjct: 537 IQKDPEVLGILQDPAMQAILGQARENPAALMEHMKNPTVKSKIEKL 582
>sp|Q9UPQ0|LIMC1_HUMAN LIM and calponin homology domains-containing protein 1 OS=Homo
sapiens GN=LIMCH1 PE=1 SV=4
Length = 1083
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 27 GSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPK 86
GSP P A TP P SQP+ + D+ T V+GK V GET +EE K
Sbjct: 522 GSPSKTVTPKAVPMLTPKPY-SQPKNSQDVLKT-------FKVDGKVSVNGETVHREEEK 573
Query: 87 KYAFVDVSPEETLQKSSFDNFEDVKETSSS 116
+ V+P +L KS FE V S
Sbjct: 574 ERECPTVAPAHSLTKSQM--FEGVARVHGS 601
>sp|Q86DS1|F10A2_DROME Hsc70-interacting protein 2 OS=Drosophila melanogaster GN=HIP-R
PE=1 SV=2
Length = 377
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 250 EIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKI 290
+I P V AAI + NP NI KY ++ ++ ++I KI
Sbjct: 299 DILGAMSDPEVSAAIQDILSNPGNITKYASNPKIYNLIKKI 339
>sp|C4NYP8|F10A1_DROME Hsc70-interacting protein 1 OS=Drosophila melanogaster GN=HIP PE=1
SV=2
Length = 377
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 250 EIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKI 290
+I P V AAI + NP NI KY ++ ++ ++I KI
Sbjct: 299 DILGAMSDPEVSAAIQDILSNPGNITKYASNPKIYNLIKKI 339
>sp|Q1IJF8|SYC_KORVE Cysteine--tRNA ligase OS=Koribacter versatilis (strain Ellin345)
GN=cysS PE=3 SV=1
Length = 495
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 21/78 (26%)
Query: 180 PASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQF-------- 231
P+S + +L + YRKQL DG+ ++ +D L+NF K++
Sbjct: 289 PSSIRFLLMSVPYRKQLNFTFDGLKQA----AISVDRLRNF-------KRRIQTEPFAEG 337
Query: 232 --EQIGLTPEEVITKMMA 247
++IGL E ITK+ A
Sbjct: 338 TNDKIGLMANETITKIKA 355
>sp|Q5R4D4|NP1L1_PONAB Nucleosome assembly protein 1-like 1 OS=Pongo abelii GN=NAP1L1 PE=2
SV=1
Length = 391
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 186 MLQNPEYRKQLQEMLDGMCE--SGEFDG------RVLDSLKNFDLNSAEVKQQF 231
M+QNP+ LQE LDG+ E +G + R +++LKN + A+++ +F
Sbjct: 42 MMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKF 95
>sp|Q4PJW2|NCOA1_PIG Nuclear receptor coactivator 1 OS=Sus scrofa GN=NCOA1 PE=2 SV=1
Length = 1440
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 18 PFGNAAFPQGSPFPFPNPPASG--PTTPYPAASQP 50
P GN PQG+P FP PP G P TP PA++ P
Sbjct: 1153 PMGNPRLPQGAPQQFPYPPNYGTNPGTP-PASTSP 1186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,318,280
Number of Sequences: 539616
Number of extensions: 5203458
Number of successful extensions: 20279
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 19960
Number of HSP's gapped (non-prelim): 442
length of query: 301
length of database: 191,569,459
effective HSP length: 117
effective length of query: 184
effective length of database: 128,434,387
effective search space: 23631927208
effective search space used: 23631927208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)