Query 022173
Match_columns 301
No_of_seqs 122 out of 207
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 15:07:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lnm_A Protein TIC 40, chlorop 99.8 2.5E-20 8.5E-25 137.3 8.2 62 238-299 1-62 (62)
2 2llw_A Heat shock protein STI1 99.8 3.1E-19 1.1E-23 136.2 6.4 60 233-292 4-63 (71)
3 2llv_A Heat shock protein STI1 99.3 2.3E-13 7.8E-18 102.8 1.6 52 241-292 15-67 (71)
4 2lnm_A Protein TIC 40, chlorop 97.3 0.00032 1.1E-08 51.3 4.7 48 156-207 14-61 (62)
5 2llw_A Heat shock protein STI1 96.6 0.0019 6.4E-08 49.1 3.9 43 156-202 22-64 (71)
6 2kqz_A Proteasomal ubiquitin r 95.5 0.004 1.4E-07 53.3 1.5 54 149-202 38-94 (155)
7 2kr0_A Proteasomal ubiquitin r 94.1 0.037 1.2E-06 54.0 4.2 56 148-203 293-351 (411)
8 2qsf_X RAD23, UV excision repa 93.1 0.024 8.3E-07 49.5 1.0 38 156-197 25-68 (171)
9 2llv_A Heat shock protein STI1 85.6 0.2 6.7E-06 37.4 0.5 16 187-202 29-44 (71)
10 2qsf_X RAD23, UV excision repa 56.1 6.7 0.00023 34.1 2.9 38 242-282 39-82 (171)
11 3fse_A Two-domain protein cont 49.8 35 0.0012 32.2 6.9 98 154-277 230-336 (365)
12 2fv2_A RCD1 required for cell 44.0 15 0.00051 34.2 3.3 50 155-204 218-267 (268)
13 3pkr_A FLIG, flagellar motor s 43.2 62 0.0021 29.7 7.3 55 147-202 57-129 (279)
14 2zs0_B Extracellular giant hem 41.2 33 0.0011 26.9 4.5 54 240-293 30-93 (142)
15 2zs0_C Extracellular giant hem 40.3 34 0.0012 27.1 4.5 53 240-292 34-96 (147)
16 2zs0_A Extracellular giant hem 37.2 42 0.0014 26.4 4.5 53 240-292 30-92 (140)
17 1pve_A HHR23B, UV excision rep 37.1 17 0.00059 27.6 2.1 13 267-279 47-59 (72)
18 1x9f_D Globin C, hemoglobin ch 36.5 44 0.0015 26.1 4.5 53 240-292 30-92 (140)
19 1ith_A Hemoglobin (cyano Met); 36.3 25 0.00085 27.6 3.1 52 240-292 28-92 (141)
20 1x46_A Globin chain, hemoglobi 34.5 87 0.003 24.6 6.0 54 239-292 27-97 (150)
21 2nrl_A Myoglobin; transport pr 34.3 73 0.0025 25.2 5.6 51 240-292 24-87 (147)
22 1x9f_C Erythrocruorin, globin 34.0 62 0.0021 25.7 5.1 53 240-292 38-100 (153)
23 1yhu_D Hemoglobin B2 chain; gl 33.9 50 0.0017 26.2 4.5 53 240-292 34-96 (149)
24 1oqy_A HHR23A, UV excision rep 33.0 34 0.0012 32.4 3.9 40 155-198 236-280 (368)
25 1sct_B Hemoglobin II (carbonmo 32.4 1E+02 0.0034 24.3 6.1 53 240-292 37-101 (151)
26 1h97_A Globin-3; HET: HEM; 1.1 31.0 49 0.0017 26.5 4.0 54 240-293 30-97 (147)
27 1pve_A HHR23B, UV excision rep 30.8 26 0.00088 26.7 2.2 27 256-282 24-52 (72)
28 1yhu_B Giant hemoglobins B cha 30.8 55 0.0019 25.5 4.2 54 240-293 32-95 (144)
29 3g46_A Globin-1; oxygen transp 30.1 64 0.0022 25.5 4.6 53 240-292 35-99 (146)
30 1x9f_B Erythrocruorin, globin 30.0 64 0.0022 25.4 4.5 53 240-292 32-94 (145)
31 3ltm_A Alpha-REP4; protein eng 29.8 2E+02 0.0069 22.5 8.7 15 190-204 64-78 (211)
32 4fhr_B Flagellar motor switch 29.3 1.3E+02 0.0045 26.3 6.8 52 151-203 3-72 (216)
33 3hjl_A Flagellar motor switch 29.1 1E+02 0.0035 28.8 6.4 52 150-202 115-184 (329)
34 2k7r_A Primosomal protein DNAI 28.6 24 0.00081 27.5 1.7 16 240-255 23-38 (106)
35 1jf3_A Monomer hemoglobin comp 28.3 71 0.0024 24.9 4.4 53 240-292 29-88 (147)
36 1it2_A Hemoglobin; hagfish, de 28.1 64 0.0022 25.6 4.2 54 239-292 35-101 (146)
37 1x9f_A Globin IV, extracellula 27.3 56 0.0019 26.1 3.8 53 240-292 37-99 (151)
38 4e17_B Catenin alpha-1; four h 26.5 34 0.0012 23.7 2.0 17 259-281 23-39 (40)
39 1yhu_C Hemoglobin B1A chain; g 26.4 83 0.0028 24.9 4.6 53 240-292 35-97 (148)
40 2vyw_A Hemoglobin; trematode, 25.7 62 0.0021 25.9 3.8 54 240-293 31-98 (148)
41 4hrt_B Hemoglobin B chain; oxy 25.4 1.4E+02 0.0046 23.8 5.7 53 240-292 38-102 (152)
42 1b0b_A Hemoglobin; hemoprotein 24.7 1.6E+02 0.0056 22.7 6.0 53 240-292 27-94 (142)
43 1x3k_A Hemoglobin component V; 24.4 91 0.0031 24.8 4.5 53 240-292 30-96 (152)
44 1sct_A Hemoglobin II (carbonmo 23.7 96 0.0033 24.4 4.5 53 240-292 36-100 (150)
45 1zoq_C CREB-binding protein, i 23.6 83 0.0028 22.5 3.6 11 256-266 28-38 (47)
46 1mba_A Myoglobin; oxygen stora 23.3 71 0.0024 24.9 3.6 53 240-292 28-94 (147)
47 3l4h_A E3 ubiquitin-protein li 23.0 1.1E+02 0.0038 24.9 4.7 51 240-290 15-66 (109)
48 1lhs_A Myoglobin; oxygen stora 22.9 1.2E+02 0.0042 24.1 5.0 51 240-292 27-91 (153)
49 2wy4_A Single domain haemoglob 21.7 46 0.0016 25.6 2.2 53 240-292 26-82 (140)
50 1hlm_A Hemoglobin (cyano Met); 21.6 82 0.0028 24.9 3.7 54 239-292 37-103 (159)
51 1a6m_A Myoglobin; heme protein 20.8 1.4E+02 0.0049 23.6 5.0 51 240-292 27-91 (151)
52 2dc3_A Cytoglobin; myoglobin, 20.4 1.2E+02 0.0041 25.3 4.6 53 240-292 47-114 (193)
53 1hlb_A Hemoglobin (deoxy); oxy 20.3 1E+02 0.0036 24.3 4.1 54 239-292 37-103 (158)
54 1o9i_A Pseudocatalase; oxidore 20.3 70 0.0024 29.4 3.4 19 274-292 158-176 (266)
55 2lhb_A Hemoglobin V (cyano Met 20.1 1.3E+02 0.0046 23.6 4.6 53 240-292 36-103 (149)
No 1
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=2.5e-20 Score=137.33 Aligned_cols=62 Identities=73% Similarity=1.238 Sum_probs=60.0
Q ss_pred hHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHHhCCCCCC
Q 022173 238 PEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTG 299 (301)
Q Consensus 238 peE~~skiM~DPEI~aamQDPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~a~FgG~~g 299 (301)
|+++++||++||||+++|+||+|+++|+||++||+++++|++||+|+.+|+||.++|||.+|
T Consensus 1 ~~e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~~~ 62 (62)
T 2lnm_A 1 PEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGMTG 62 (62)
T ss_dssp CHHHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHSSSCCC
T ss_pred CHHHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHhCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999876
No 2
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.1e-19 Score=136.16 Aligned_cols=60 Identities=28% Similarity=0.436 Sum_probs=58.1
Q ss_pred hcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 022173 233 QIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 292 (301)
Q Consensus 233 q~G~tpeE~~skiM~DPEI~aamQDPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~a 292 (301)
..|++++|++.++|+||||++||+||+|+++|+||++||++++||++||+|+++|+||++
T Consensus 4 ~~~e~~ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i~kl~~ 63 (71)
T 2llw_A 4 TSNETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIA 63 (71)
T ss_dssp TCCSCHHHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999976
No 3
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.3e-13 Score=102.79 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHH-hhcCHHHHHHHHHHHH
Q 022173 241 VITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK-YQNDKEVMSVITKIAE 292 (301)
Q Consensus 241 ~~skiM~DPEI~aamQDPeV~aALqDi~qNPaai~K-YmsNPkVm~~IqKL~a 292 (301)
.+.++++|||++++|+||+|+++|+||++||++|++ |++||+|+.+|.||..
T Consensus 15 ~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g 67 (71)
T 2llv_A 15 LIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMG 67 (71)
T ss_dssp CHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHc
Confidence 578999999999999999999999999999999999 9999999999999964
No 4
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=97.25 E-value=0.00032 Score=51.25 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=41.0
Q ss_pred HHHhhhCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhccCCC
Q 022173 156 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESG 207 (301)
Q Consensus 156 l~~Mm~nP~~Qqm~ypylPe~MRNp~tfk~MlqNP~~r~qL~~Ml~~mgg~g 207 (301)
+..+|+||+|++++.- .++||..+..+++||.+++.|+.+++-+||-+
T Consensus 14 ~~~~m~dP~~~~~lq~----i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~~ 61 (62)
T 2lnm_A 14 VAMAFQNPRVQAALME----CSENPMNIMKYQNDKEVMDVFNKISQLFPGMT 61 (62)
T ss_dssp HHHHTTSHHHHHHHHH----HTTCGGGHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred HHHHcCCHHHHHHHHH----HHHCHHHHHHHHhChHHHHHHHHHHHHhCCCC
Confidence 5567777777776665 88999999999999999999999999999855
No 5
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0019 Score=49.06 Aligned_cols=43 Identities=28% Similarity=0.570 Sum_probs=33.9
Q ss_pred HHHhhhCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHh
Q 022173 156 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDG 202 (301)
Q Consensus 156 l~~Mm~nP~~Qqm~ypylPe~MRNp~tfk~MlqNP~~r~qL~~Ml~~ 202 (301)
|..+|+||+|++++.- .|+||..+..+|+||.+++.|+.+.+.
T Consensus 22 i~~im~DP~~~~~lq~----~~~NP~~~~k~~~nP~v~~~i~kl~~a 64 (71)
T 2llw_A 22 VAAIMQDPVMQSILQQ----AQQNPAALQEHMKNPEVFKKIQTLIAA 64 (71)
T ss_dssp HHHHHTCTHHHHHHHH----HHHCHHHHHHHHHSHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHH----HHHCHHHHHHHHhCHHHHHHHHHHHHc
Confidence 4456666666666655 788999999999999999999988764
No 6
>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A
Probab=95.49 E-value=0.004 Score=53.32 Aligned_cols=54 Identities=19% Similarity=0.385 Sum_probs=46.0
Q ss_pred ccccHHHHHHhhhCHHHHHhhcCCCccccC---CHHHHHHHhhChHHHHHHHHHHHh
Q 022173 149 RFLTVDTLEKLMEDPQVQKMVYPSLPEEMR---NPASFKLMLQNPEYRKQLQEMLDG 202 (301)
Q Consensus 149 ~~~~~~~l~~Mm~nP~~Qqm~ypylPe~MR---Np~tfk~MlqNP~~r~qL~~Ml~~ 202 (301)
..|+.+.|..+++||.+++-+++|||+--+ ..+-++..+..|||+|.|.-+=..
T Consensus 38 dvLt~e~l~~ll~d~~~~~~L~~~LP~~~~~~~~~e~L~~~l~SPQF~Qal~~fs~A 94 (155)
T 2kqz_A 38 SVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAA 94 (155)
T ss_dssp HHTCTTTSHHHHHSHHHHHHHHHHSCSSCCCCSSHHHHHSSCCSHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHcCHHHHHHHHhhCCCCCCCCCCHHHHHHHHcCHHHHHHHHHHHHH
Confidence 346677888999999999999999998865 899999999999999998765333
No 7
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=94.09 E-value=0.037 Score=54.03 Aligned_cols=56 Identities=18% Similarity=0.401 Sum_probs=46.5
Q ss_pred CccccHHHHHHhhhCHHHHHhhcCCCcccc---CCHHHHHHHhhChHHHHHHHHHHHhc
Q 022173 148 GRFLTVDTLEKLMEDPQVQKMVYPSLPEEM---RNPASFKLMLQNPEYRKQLQEMLDGM 203 (301)
Q Consensus 148 ~~~~~~~~l~~Mm~nP~~Qqm~ypylPe~M---RNp~tfk~MlqNP~~r~qL~~Ml~~m 203 (301)
...|+.+.|..++.||++++-+.+|||+.= +..+-++..|..|||+|.|.-+=..+
T Consensus 293 ~dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~fs~AL 351 (411)
T 2kr0_A 293 ASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAAL 351 (411)
T ss_dssp GGTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 345778999999999999999999999853 37788888899999999997654443
No 8
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=93.11 E-value=0.024 Score=49.49 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=26.8
Q ss_pred HHHhh-hCHHHHHhhcCCCccccCCHHHHHHHhh-----ChHHHHHHH
Q 022173 156 LEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQ-----NPEYRKQLQ 197 (301)
Q Consensus 156 l~~Mm-~nP~~Qqm~ypylPe~MRNp~tfk~Mlq-----NP~~r~qL~ 197 (301)
|+.|+ ++|+||+|..= -.+||+.+.-||| ||++.++|.
T Consensus 25 l~~L~~~~Pqf~qlRq~----vqqNPqlL~~lLqqig~~NPqL~qlI~ 68 (171)
T 2qsf_X 25 PGSIGLTVEDLLSLRQV----VSGNPEALAPLLENISARYPQLREHIM 68 (171)
T ss_dssp ---CCCCHHHHHHHHHH----HHTCGGGHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHhcCHHHHHHHHH----HHHCHHHHHHHHHHHHhhCHHHHHHHH
Confidence 88899 99998877543 3458888888876 888887764
No 9
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=85.62 E-value=0.2 Score=37.42 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=9.7
Q ss_pred hhChHHHHHHHHHHHh
Q 022173 187 LQNPEYRKQLQEMLDG 202 (301)
Q Consensus 187 lqNP~~r~qL~~Ml~~ 202 (301)
|++|+|++.|+++.++
T Consensus 29 ~~DP~~~~~lq~i~~N 44 (71)
T 2llv_A 29 MKDPQLVAKLIGYKQN 44 (71)
T ss_dssp HHSCTHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHC
Confidence 3666666666666555
No 10
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=56.09 E-value=6.7 Score=34.12 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=23.4
Q ss_pred HHHhcCCHHHHhhc------CCHHHHHHHHHHhhChHHHHHhhcCHH
Q 022173 242 ITKMMANPEIALGF------QSPRVQAAIMECSQNPMNIIKYQNDKE 282 (301)
Q Consensus 242 ~skiM~DPEI~aam------QDPeV~aALqDi~qNPaai~KYmsNPk 282 (301)
..-+.+||+++..| +||.+.+ -|++||..+...+++|.
T Consensus 39 Rq~vqqNPqlL~~lLqqig~~NPqL~q---lI~qNqe~Fl~mLnep~ 82 (171)
T 2qsf_X 39 RQVVSGNPEALAPLLENISARYPQLRE---HIMANPEVFVSMLLEAV 82 (171)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHCTTHHH---HHHHCHHHHHHHHHHCC
T ss_pred HHHHHHCHHHHHHHHHHHHhhCHHHHH---HHHHCHHHHHHHHhCcc
Confidence 45566677766555 5666543 45567777777776653
No 11
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=49.81 E-value=35 Score=32.16 Aligned_cols=98 Identities=15% Similarity=0.247 Sum_probs=58.9
Q ss_pred HHHHHhhhCHHHHHhhcCCCccccCCHHHHHHHhhChHH-HHHHHHHHHhccCCCCCchhhhhhhccCCCChHHHHHHHH
Q 022173 154 DTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEY-RKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFE 232 (301)
Q Consensus 154 ~~l~~Mm~nP~~Qqm~ypylPe~MRNp~tfk~MlqNP~~-r~qL~~Ml~~mgg~g~~~~~m~d~l~~~D~Nn~Ei~e~~~ 232 (301)
++.+.-.+||.++ ..|+-|.+|-+. -++|++-|.++|+-..|+..+.+.+.+.-...
T Consensus 230 e~~a~~~~d~~~~--------------~~~~~i~~~~~~h~~~l~~~~~~~g~~~~~~~~~~~~~a~~~~~~-------- 287 (365)
T 3fse_A 230 EKYTEKESDVEAK--------------ALFQEMITNKQRHIEYLETYLTRLGEKPSLSANIANQYAKVKTAL-------- 287 (365)
T ss_dssp HHHHHHCCCHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCC--------------------
T ss_pred HHHHHhcCCHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhCCCcCcCcchhHHHHHHHHHh--------
Confidence 3444556788888 788888888765 46789999999998877776644333321000
Q ss_pred hcCCChHHHHHHhcCC--------HHHHhhcCCHHHHHHHHHHhhChHHHHHh
Q 022173 233 QIGLTPEEVITKMMAN--------PEIALGFQSPRVQAAIMECSQNPMNIIKY 277 (301)
Q Consensus 233 q~G~tpeE~~skiM~D--------PEI~aamQDPeV~aALqDi~qNPaai~KY 277 (301)
.+-++-+.+.+++.| -++..-+.||+=.++|.+|.. .+.+|
T Consensus 288 -~~~~~~~~l~~al~~~~~gi~~~~~l~~~~~dp~~~~i~~~i~~---~l~~~ 336 (365)
T 3fse_A 288 -TGSDDIYQIRSALGDIQTGIGDIGNLCAMYTDPIATAIFKEIYK---DLVKY 336 (365)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHH---HHHHH
T ss_pred -cCCChHHHHHHHhcchhhhHHHHHHHHHhcCCHHHHHHHHHHHH---HHHHH
Confidence 011222334444443 345667789999999999988 44444
No 12
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=44.04 E-value=15 Score=34.20 Aligned_cols=50 Identities=10% Similarity=0.379 Sum_probs=43.4
Q ss_pred HHHHhhhCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhcc
Q 022173 155 TLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMC 204 (301)
Q Consensus 155 ~l~~Mm~nP~~Qqm~ypylPe~MRNp~tfk~MlqNP~~r~qL~~Ml~~mg 204 (301)
--..+-+||.-..++-.+||+..||..--.-+-.||..|+.|.+++.+.+
T Consensus 218 cYlRLsdn~rar~aL~~~LP~~Lrd~tf~~~l~~D~~~k~~l~qLl~n~~ 267 (268)
T 2fv2_A 218 CYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 267 (268)
T ss_dssp HHHHHTTSHHHHHHHHHHSCGGGTSSTTHHHHTSCHHHHHHHHHHHHHSC
T ss_pred HHHHHhcCHHHHHHHHHhCcHHhhChHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34567889999999999999999998766677779999999999998875
No 13
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=43.19 E-value=62 Score=29.72 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=38.9
Q ss_pred cCccccHHHHHHhhh--CHHHHHhhcCCC------------ccccCCHHHHHHHhh----ChHHHHHHHHHHHh
Q 022173 147 EGRFLTVDTLEKLME--DPQVQKMVYPSL------------PEEMRNPASFKLMLQ----NPEYRKQLQEMLDG 202 (301)
Q Consensus 147 ~~~~~~~~~l~~Mm~--nP~~Qqm~ypyl------------Pe~MRNp~tfk~Mlq----NP~~r~qL~~Ml~~ 202 (301)
.=..++..+|+++++ .||.+-++..|| |+.+|+ +++.+|.. .|+.-+.|++.|.+
T Consensus 57 ~L~~~dp~~La~~l~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~r~-dV~~Ria~l~~v~p~~l~~le~~L~~ 129 (279)
T 3pkr_A 57 YLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKA-EISIRMANLGEISPQVVKRVSTVLEN 129 (279)
T ss_dssp GGGGSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHH-HHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHCCHHHHH-HHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 334578999999986 599998887765 566665 45555543 57777777777765
No 14
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=41.16 E-value=33 Score=26.95 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=39.9
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHHh
Q 022173 240 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAEL 293 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ--------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a~ 293 (301)
+.+.+++. +||++..|. +|+|++--.-|..==..+.++++|+. +...+.+|..+
T Consensus 30 ~~~~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~~ 93 (142)
T 2zs0_B 30 RIWEDLFANMPDARGLFSRVNGNDIDSSEFQAHSLRVLGGLDMCVASLDDVPVLNALLARLNSQ 93 (142)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57888886 899999995 57777666666655566778888866 77788888763
No 15
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=40.31 E-value=34 Score=27.09 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=37.9
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ--------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|++.+--..|..==..+.++++|+. +...+.+|..
T Consensus 34 ~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~ 96 (147)
T 2zs0_C 34 AVFASLFSRDAAAQGLFSGVSADNPDSADFRAHCVRVVNGLDVAINMLNDPAVLNEQLAHLSA 96 (147)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHhccccCccCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888886 899999994 67777755555544455677788866 6677777765
No 16
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=37.17 E-value=42 Score=26.37 Aligned_cols=53 Identities=9% Similarity=0.179 Sum_probs=37.6
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ--------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|++++--..+..==..+.++++|+. +...+.+|..
T Consensus 30 ~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ld~~~~l~~~l~~L~~ 92 (140)
T 2zs0_A 30 DLFSELFNIQGSSRALFSGVGVDDMNSAAFTAHCLRVTGALNRLISQLDQQATINADLAHLAG 92 (140)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56888886 899998884 57777655555554556677788866 6677777765
No 17
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=37.07 E-value=17 Score=27.65 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=5.9
Q ss_pred HhhChHHHHHhhc
Q 022173 267 CSQNPMNIIKYQN 279 (301)
Q Consensus 267 i~qNPaai~KYms 279 (301)
|++||..+...++
T Consensus 47 I~~n~e~Fl~ll~ 59 (72)
T 1pve_A 47 ISQHQEHFIQMLN 59 (72)
T ss_dssp HHTTHHHHHHHHH
T ss_pred HHHCHHHHHHHHc
Confidence 3445544444443
No 18
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=36.52 E-value=44 Score=26.11 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=37.7
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ--------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|+|.+--.-+..==..+.++++|+. +...+.+|..
T Consensus 30 ~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~ 92 (140)
T 1x9f_D 30 ELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKV 92 (140)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888886 899999985 57776654445544556677888876 6677777765
No 19
>1ith_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.50A {Urechis caupo} SCOP: a.1.1.2
Probab=36.34 E-value=25 Score=27.57 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=39.2
Q ss_pred HHHHHhcC-CHHHHhhcC------------CHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ------------SPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ------------DPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|++.+--.-+..==..+.++++|+ +...+.+|..
T Consensus 28 ~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld~~-l~~~l~~L~~ 92 (141)
T 1ith_A 28 SIFFKYLTAYPGDLAFFHKFSSVPLYGLRSNPAYKAQTLTVINYLDKVVDALGGN-AGALMKAKVP 92 (141)
T ss_dssp HHHHHHHHHSGGGGGGCTTTTTSCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTTT-HHHHHHTTHH
T ss_pred HHHHHHHHHChHHHHHhHhhcCCCHHHHhhCHHHHHHHHHHHHHHHHHHHHcccH-HHHHHHHHHH
Confidence 57888886 799999885 6777766666665556677888887 8888877765
No 20
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=34.47 E-value=87 Score=24.56 Aligned_cols=54 Identities=7% Similarity=0.087 Sum_probs=34.5
Q ss_pred HHHHHHhcC-CHHHHhhcC------------CHHHHHHHHHHhhChHHHHHhhcC---HH-HHHHHHHHHH
Q 022173 239 EEVITKMMA-NPEIALGFQ------------SPRVQAAIMECSQNPMNIIKYQND---KE-VMSVITKIAE 292 (301)
Q Consensus 239 eE~~skiM~-DPEI~aamQ------------DPeV~aALqDi~qNPaai~KYmsN---Pk-Vm~~IqKL~a 292 (301)
.+.+.+++. +||++..|. +|++.+--.-+..==..+.++++| +. +...+.+|..
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~~~~~~l~~~l~~L~~ 97 (150)
T 1x46_A 27 VDILYNFFKSYPASQAKFSAFAGKDLESLKDTAPFALHATRIVSVINEAIALMGVAENRPALKNVLKQQGI 97 (150)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHhhHhccCCCHHHHhhChHHHHHHHHHHHHHHHHHHHccCcCcHHHHHHHHHHHHH
Confidence 467888886 899998885 555554434444333445667777 54 5667777755
No 21
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=34.26 E-value=73 Score=25.21 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=35.3
Q ss_pred HHHHHhcC-CHHHHhhc------------CCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGF------------QSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aam------------QDPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~a 292 (301)
+.+.+++. +||++..| .+|++.+=-..+..==..+.++++|++ ..+.+|..
T Consensus 24 ~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~--~~l~~L~~ 87 (147)
T 2nrl_A 24 LVLTRLFKEHPETQKLFPKFAGIAQADIAGNAAVSAHGATVLKKLGELLKAKGSHA--AILKPLAN 87 (147)
T ss_dssp HHHHHHHHHCHHHHTTCTTTTTCCGGGTTTCHHHHHHHHHHHHHHHHHHHCSSCHH--HHHHHHHH
T ss_pred HHHHHHHHHCHhHHHHhhhhcCCCHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHH
Confidence 56888886 89998888 456666555555555556677788876 67777755
No 22
>1x9f_C Erythrocruorin, globin III, extracellular, globin C; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_C*
Probab=34.04 E-value=62 Score=25.74 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=34.4
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ--------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|++.+--..|..==..+.++++|+. +...+.+|..
T Consensus 38 ~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~ 100 (153)
T 1x9f_C 38 LLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAH 100 (153)
T ss_dssp HHHHHHHHHSTTHHHHTGGGTGGGTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHhhhhcCccCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778886 788888884 56666444444433445567777766 6667777755
No 23
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=33.86 E-value=50 Score=26.20 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=37.5
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ--------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|++.+--..|..==..+.++++|+. +...+.+|..
T Consensus 34 ~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~ 96 (149)
T 1yhu_D 34 AVFKDLFANVPDAVGLFGAVKGDEVNSNEFKAHCIRVVNGLDSSIGLLSDPATLNEQLSHLAT 96 (149)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTSSSTTSHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57888886 899999984 57777555555554555677788876 6667777765
No 24
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=32.99 E-value=34 Score=32.44 Aligned_cols=40 Identities=38% Similarity=0.514 Sum_probs=27.4
Q ss_pred HHHHhhhCHHHHHhhcCCCccccCCHHHHHHHhh-----ChHHHHHHHH
Q 022173 155 TLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQ-----NPEYRKQLQE 198 (301)
Q Consensus 155 ~l~~Mm~nP~~Qqm~ypylPe~MRNp~tfk~Mlq-----NP~~r~qL~~ 198 (301)
.|+-+.++|+||+|-.=+ -+||+.+.-||| ||++.++|.+
T Consensus 236 ~l~~Lr~~pqf~~lR~~v----q~nP~~l~~~lq~l~~~nP~l~~~I~~ 280 (368)
T 1oqy_A 236 PLEFLRDQPQFQNMRQVI----QQNPALLPALLQQLGQENPQLLQQISR 280 (368)
T ss_dssp TTHHHHHSHHHHHHHHST----TTCTTHHHHHHTTTTTTCHHHHHHHHH
T ss_pred hHHHHhcChHHHHHHHHH----HhChHHHHHHHHHHHhhCHHHHHHHHH
Confidence 367788999988764432 257777777765 7777776654
No 25
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=32.37 E-value=1e+02 Score=24.29 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=31.8
Q ss_pred HHHHHhcC-CHHHHhhcC----------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ----------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ----------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. ||++..--.-+..==..+.++++|+. +...+.+|..
T Consensus 37 ~~y~rlF~~~P~~k~~F~~f~~~~~~~~n~~~~~h~~~v~~al~~~v~~ld~~~~l~~~l~~L~~ 101 (151)
T 1sct_B 37 MLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDDVERLKCVVEKFAV 101 (151)
T ss_dssp HHHHHHHHHCHHHHHHTGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHhCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777776 788887773 45554444444443444566777755 5566777654
No 26
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A*
Probab=30.96 E-value=49 Score=26.47 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=39.7
Q ss_pred HHHHHhcC-CHHHHhhcC------------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHHh
Q 022173 240 EVITKMMA-NPEIALGFQ------------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAEL 293 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ------------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a~ 293 (301)
+.+.+++. +||++..|. +|++.+==..+..==..+.++++|+. +...+.+|..+
T Consensus 30 ~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~ 97 (147)
T 1h97_A 30 GAYHALFTAHPQYISHFSRLEGHTIENVMQSEGIKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGKD 97 (147)
T ss_dssp HHHHHHHHHCGGGGGGSGGGTTCCTTTGGGSHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 57888886 899888884 67776665556655566778888876 67888888764
No 27
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=30.79 E-value=26 Score=26.68 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=17.2
Q ss_pred CCHHHH-HHHHHHh-hChHHHHHhhcCHH
Q 022173 256 QSPRVQ-AAIMECS-QNPMNIIKYQNDKE 282 (301)
Q Consensus 256 QDPeV~-aALqDi~-qNPaai~KYmsNPk 282 (301)
+||++. .+|++|. +||.-+.-...||+
T Consensus 24 qNP~lL~~lLqqL~~~NPqL~q~I~~n~e 52 (72)
T 1pve_A 24 QNPSLLPALLQQIGRENPQLLQQISQHQE 52 (72)
T ss_dssp TCGGGHHHHHHHHHTTCHHHHHHHHTTHH
T ss_pred HCHHHHHHHHHHHHhHCHHHHHHHHHCHH
Confidence 455443 3455555 67888887778876
No 28
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=30.78 E-value=55 Score=25.50 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=39.1
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHHh
Q 022173 240 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAEL 293 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ--------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a~ 293 (301)
+.+.+++. +||++..|. +|++..--..+..==..+.++++|+. +...+.+|..+
T Consensus 32 ~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~ 95 (144)
T 1yhu_B 32 FIWSHVFQHSPAARDMFKRVRGDNIHTPAFRAHATRVLGGLDMCIALLDDEPVLNTQLAHLAKQ 95 (144)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTCSSSHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56778886 899998886 37776665556655566778888876 66788888663
No 29
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=30.07 E-value=64 Score=25.51 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=38.6
Q ss_pred HHHHHhcC-CHHHHhhcC----------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ----------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ----------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|++..--.-+..==..+.++++|++ +...+.+|..
T Consensus 35 ~~~~rlF~~~P~~k~~F~~~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~l~~ 99 (146)
T 3g46_A 35 ALMTTLFADNQETIGYFKRLGDVSQGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKFAV 99 (146)
T ss_dssp HHHHHHHHHCGGGGGGGGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888888 799999885 57776655555555566778888887 6666676655
No 30
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=30.00 E-value=64 Score=25.36 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=38.2
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ--------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|+|.+--.-+..==..+.++++|+. +...+.+|..
T Consensus 32 ~~y~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~ 94 (145)
T 1x9f_B 32 AIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQPATLKEELDHLQV 94 (145)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888886 899999984 56776655555555556677888877 6677777765
No 31
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.84 E-value=2e+02 Score=22.52 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHhcc
Q 022173 190 PEYRKQLQEMLDGMC 204 (301)
Q Consensus 190 P~~r~qL~~Ml~~mg 204 (301)
+..|......|..++
T Consensus 64 ~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 64 AWVRRAAADALGQIG 78 (211)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 445555555555544
No 32
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=29.33 E-value=1.3e+02 Score=26.30 Aligned_cols=52 Identities=25% Similarity=0.421 Sum_probs=35.8
Q ss_pred ccHHHHHHhhh--CHHHHHhhcCCC------------ccccCCHHHHHHHhh----ChHHHHHHHHHHHhc
Q 022173 151 LTVDTLEKLME--DPQVQKMVYPSL------------PEEMRNPASFKLMLQ----NPEYRKQLQEMLDGM 203 (301)
Q Consensus 151 ~~~~~l~~Mm~--nP~~Qqm~ypyl------------Pe~MRNp~tfk~Mlq----NP~~r~qL~~Ml~~m 203 (301)
.+-.+|++++. .||++-++..|| |+.+|+ +++.+|.. .|+.-+.|+..|.+.
T Consensus 3 mdp~~la~~l~~EhPQ~iA~iLs~L~~~~AA~VL~~Lp~~~~~-ev~~Ria~l~~v~p~~~~~l~~~L~~~ 72 (216)
T 4fhr_B 3 MDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQT-EVLKRIALLERTSPEVVKEIERNLEKK 72 (216)
T ss_dssp CCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHTSCGGGHH-HHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHCCHHHHH-HHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 56778888885 589988887765 566665 44555443 677777777777654
No 33
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=29.12 E-value=1e+02 Score=28.83 Aligned_cols=52 Identities=27% Similarity=0.441 Sum_probs=33.5
Q ss_pred cccHHHHHHhhh--CHHHHHhhcCCC------------ccccCCHHHHHHHhh----ChHHHHHHHHHHHh
Q 022173 150 FLTVDTLEKLME--DPQVQKMVYPSL------------PEEMRNPASFKLMLQ----NPEYRKQLQEMLDG 202 (301)
Q Consensus 150 ~~~~~~l~~Mm~--nP~~Qqm~ypyl------------Pe~MRNp~tfk~Mlq----NP~~r~qL~~Ml~~ 202 (301)
.++..+|+++++ .||.+-++..|| |+.+|+ +++.+|.. +|+.-+.|++.|.+
T Consensus 115 ~~dp~~la~~i~~EhPQtiAlILs~L~p~~AA~vL~~Lp~~~r~-ev~~Ria~l~~v~p~~l~~le~~L~~ 184 (329)
T 3hjl_A 115 KVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKK-EVVKRIATLENVNVQYVKELAQILLE 184 (329)
T ss_dssp TSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHH-HHHHHHHHCSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHhCCHHHHH-HHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 467788888885 599999988876 455554 34444433 56665555555543
No 34
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=28.58 E-value=24 Score=27.47 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=10.6
Q ss_pred HHHHHhcCCHHHHhhc
Q 022173 240 EVITKMMANPEIALGF 255 (301)
Q Consensus 240 E~~skiM~DPEI~aam 255 (301)
+.+.++++||+|++.+
T Consensus 23 ~~~~~vl~dP~V~~Fl 38 (106)
T 2k7r_A 23 QMKEKVMKDQDVQAFL 38 (106)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCHHHHHHH
Confidence 4566777777766655
No 35
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=28.25 E-value=71 Score=24.87 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=36.0
Q ss_pred HHHHHhc-CCHHHHhhcC-----CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMM-ANPEIALGFQ-----SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM-~DPEI~aamQ-----DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++ .+||++..|. ||+++.--..+..==..+.++++|+. +...+.+|..
T Consensus 29 ~~y~rlf~~~P~~~~~F~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~ 88 (147)
T 1jf3_A 29 ECLSKFISAHPEMAAVFGFSGASDPGVAELGAKVLAQIGVAVSHLGDEGKMVAEMKAVGV 88 (147)
T ss_dssp HHHHHHHHHCGGGTTTTTCSSTTCHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5788999 6999999996 48887643444433345666777763 4566777765
No 36
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=28.06 E-value=64 Score=25.58 Aligned_cols=54 Identities=15% Similarity=0.362 Sum_probs=39.1
Q ss_pred HHHHHHhcC-CHHHHhhc-----------CCHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 239 EEVITKMMA-NPEIALGF-----------QSPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 239 eE~~skiM~-DPEI~aam-----------QDPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
.+.+.+++. +||++..| .+|++.+=-..+..==..+.++++|+. +...+.+|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~f~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~ 101 (146)
T 1it2_A 35 LNILLRFLKCFPQAQASFPKFSTKKSNLEQDPEVKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQ 101 (146)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCCSCGGGCHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 357888886 89999998 467776665666655566777888876 6667777765
No 37
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=27.28 E-value=56 Score=26.08 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=37.3
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ--------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|++.+--..+..==..+.++++|+. +...+.+|..
T Consensus 37 ~~~~rlF~~~P~~k~~F~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~ 99 (151)
T 1x9f_A 37 AVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLAD 99 (151)
T ss_dssp HHHHHHHHHCGGGGGGGTTTTTTSTTSSHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888886 899999995 66665555555555555677788855 6667777765
No 38
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=26.53 E-value=34 Score=23.73 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhChHHHHHhhcCH
Q 022173 259 RVQAAIMECSQNPMNIIKYQNDK 281 (301)
Q Consensus 259 eV~aALqDi~qNPaai~KYmsNP 281 (301)
-|++||||+ +++|++|+
T Consensus 23 avrqALQdL------lseY~~~~ 39 (40)
T 4e17_B 23 AVRQALQDL------LSEYMGNA 39 (40)
T ss_dssp HHHHHHHHH------HHHHHC--
T ss_pred HHHHHHHHH------HHHHhccC
Confidence 478888887 56788765
No 39
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=26.44 E-value=83 Score=24.86 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=38.6
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ--------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|++..--.-+..==..+.++++|+. +...+.+|..
T Consensus 35 ~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~ 97 (148)
T 1yhu_C 35 EVFAALFKMVPAAKNLFTRVNVADINSPEFQGHVVRVMGGLDILINALDDIPTLESMLDHLAG 97 (148)
T ss_dssp HHHHHHHHHCGGGGGGSGGGTGGGTTSHHHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChhHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888886 899999984 67776665556655566777888866 5677777765
No 40
>2vyw_A Hemoglobin; trematode, oxygen binding; HET: HEM; 1.8A {Fasciola hepatica}
Probab=25.72 E-value=62 Score=25.89 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=36.7
Q ss_pred HHHHHhcC-CHHHHhhc------------CCHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHHh
Q 022173 240 EVITKMMA-NPEIALGF------------QSPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAEL 293 (301)
Q Consensus 240 E~~skiM~-DPEI~aam------------QDPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a~ 293 (301)
+.+.+++. +||++..| .+|+|.+==..+..==..+.++++|+. +...+.+|..+
T Consensus 31 ~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~ 98 (148)
T 2vyw_A 31 SIYKTLFAAHPEYISYFSKLQGLTKDNVGQSEGIRYYGRTLGEELIRLLKAASNPSVLEERIVQGAKD 98 (148)
T ss_dssp HHHHHHHHHCGGGGGGSGGGTTCCTTTGGGCSHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56788886 78888887 345555554455544455677888877 67788888663
No 41
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=25.45 E-value=1.4e+02 Score=23.75 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=29.0
Q ss_pred HHHHHhcC-CHHHHhhc----------CCHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGF----------QSPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aam----------QDPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..| ++|+++.=-..+..==..+.++++|++ +...+.+|..
T Consensus 38 ~~y~rlF~~~P~~k~~F~~f~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~ 102 (152)
T 4hrt_B 38 MLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDDVERLKCVVEKFAV 102 (152)
T ss_dssp HHHHHHHHHCTHHHHHTGGGCCCC---CCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHhHHHhhHHhCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46777776 78888877 456533322222222233455666755 4555666654
No 42
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=24.70 E-value=1.6e+02 Score=22.72 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=31.7
Q ss_pred HHHHHhcC-CHHHHhhcCC-------------HHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQS-------------PRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQD-------------PeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|.. |++.+--.-+..==..+.++++|+. +...+.+|..
T Consensus 27 ~~~~rlF~~~P~~~~~F~~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~ 94 (142)
T 1b0b_A 27 EFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAA 94 (142)
T ss_dssp HHHHHHHHHCHHHHHTTTTTTTTCCGGGCTTSHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHhHHhhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 56778776 7888888843 4444433333333344555666755 5667777754
No 43
>1x3k_A Hemoglobin component V; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.64A {Tokunagayusurika akamusi} PDB: 2zwj_A* 3a5a_A* 3a5b_A* 3a5g_A* 3a9m_A* 3arj_A* 3ark_A* 3arl_A*
Probab=24.39 E-value=91 Score=24.85 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=35.7
Q ss_pred HHHHHhcC-CHHHHhhcC------------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ------------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ------------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|++.+--..|..==..+.++++|++ +...+.+|..
T Consensus 30 ~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~~~~~~ah~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~ 96 (152)
T 1x3k_A 30 TVFYNYLKKYPSNQDKFETLKGHPLDEVKDTANFKLIAGRIFTIFDNCVKNVGNDKGFQKVIADMSG 96 (152)
T ss_dssp HHHHHHHHHSGGGGGGSTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChhHHHHhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778876 788888885 56666655555554445677777865 5567777765
No 44
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=23.72 E-value=96 Score=24.45 Aligned_cols=53 Identities=13% Similarity=0.291 Sum_probs=34.2
Q ss_pred HHHHHhcC-CHHHHhhcC----------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ----------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ----------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. ||++..--..+..==..+.++++||. +...+.+|..
T Consensus 36 ~~~~rlF~~~P~~k~~F~~~~d~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~ 100 (150)
T 1sct_A 36 MLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDDPSRLKCVVEKFAV 100 (150)
T ss_dssp HHHHHHHHHCGGGGGGGCTTCCGGGGGGSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChhHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778776 788888884 45555444444444455666777765 5566777655
No 45
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=23.57 E-value=83 Score=22.49 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=5.8
Q ss_pred CCHHHHHHHHH
Q 022173 256 QSPRVQAAIME 266 (301)
Q Consensus 256 QDPeV~aALqD 266 (301)
+||.+|+||-.
T Consensus 28 snPqLMAAfIk 38 (47)
T 1zoq_C 28 SNPQLMAAFIK 38 (47)
T ss_dssp TCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 45555555543
No 46
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=23.31 E-value=71 Score=24.95 Aligned_cols=53 Identities=11% Similarity=0.259 Sum_probs=31.2
Q ss_pred HHHHHhcC-CHHHHhhc------------CCHHHHHHHHHHhhChHHHHHhhcCH-HHHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGF------------QSPRVQAAIMECSQNPMNIIKYQNDK-EVMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aam------------QDPeV~aALqDi~qNPaai~KYmsNP-kVm~~IqKL~a 292 (301)
+.+.+++. +||++..| ++|++.+--..+..==..+.++++|+ .+...+.+|..
T Consensus 28 ~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~ 94 (147)
T 1mba_A 28 DFLVALFEKFPDSANFFADFKGKSVADIKASPKLRDVSSRIFTRLNEFVNNAANAGKMSAMLSQFAK 94 (147)
T ss_dssp HHHHHHHHHCGGGGGGCTTTTTCCHHHHHTCTTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHhhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778776 78888888 34556553333333333455666774 44566666654
No 47
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=23.04 E-value=1.1e+02 Score=24.86 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=41.4
Q ss_pred HHHHHhcCCHHHHhhc-CCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHH
Q 022173 240 EVITKMMANPEIALGF-QSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKI 290 (301)
Q Consensus 240 E~~skiM~DPEI~aam-QDPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL 290 (301)
+.++-|=.+.+.+.++ +++-|..++..|..+|..+.+|+.+...-..|+..
T Consensus 15 df~~~l~~n~~a~~~y~~~~~~k~~i~~irr~p~~we~~~~~~~lV~~vn~~ 66 (109)
T 3l4h_A 15 EFFTVLHANYSAYRVFTSSTCLKHMILKVRRDARNFERYQHNRDLVNFINMF 66 (109)
T ss_dssp THHHHHHTSHHHHHHHHHCSHHHHHHHHHHHCTHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHhcchHHHHHHHHHhcCCcChhhhcCcCCceEEeccC
Confidence 3566666677777776 89999999999999999999999998877766654
No 48
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=22.92 E-value=1.2e+02 Score=24.07 Aligned_cols=51 Identities=27% Similarity=0.354 Sum_probs=28.2
Q ss_pred HHHHHhcC-CHHHHhhcC-------------CHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ-------------SPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ-------------DPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~a 292 (301)
+.+.+++. +||++..|. ||++.+=-..+..==..+.++++|++ ..+.+|..
T Consensus 27 ~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~--~~l~~L~~ 91 (153)
T 1lhs_A 27 EVIIRLFQLHPETQERFAKFKNLTTIDALKSSEEVKKHGTTVLTALGRILKQKNNHE--QELKPLAE 91 (153)
T ss_dssp HHHHHHHHHCHHHHTTCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTCCH--HHHHHHHH
T ss_pred HHHHHHHHHChhHHHHhHhhcCCCcHHHHcCCHHHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHH
Confidence 45667765 677777763 34443333333333334456667766 66666654
No 49
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=21.71 E-value=46 Score=25.61 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=28.7
Q ss_pred HHHHHhcC-CHHHHhhcC--CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ--SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ--DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
..+.+++. +|+++..|. +..+..--.-+..-=..+.++++|+. +...+.+|..
T Consensus 26 ~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~~~~~l~~~v~~ld~~~~l~~~l~~l~~ 82 (140)
T 2wy4_A 26 EFYKIMFNDYPEVKPMFNMEKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAI 82 (140)
T ss_dssp HHHHHHHHHCGGGGGGSCHHHHHTSHHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHhcCcCcccHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 57899996 999999996 32211111111111113344555654 5666666654
No 50
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} SCOP: a.1.1.2
Probab=21.62 E-value=82 Score=24.90 Aligned_cols=54 Identities=11% Similarity=0.244 Sum_probs=36.4
Q ss_pred HHHHHHhc-CCHHHHhhcCC------------HHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 022173 239 EEVITKMM-ANPEIALGFQS------------PRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 292 (301)
Q Consensus 239 eE~~skiM-~DPEI~aamQD------------PeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~a 292 (301)
...+.+++ .+|+++..|.. |++..--..+..==..+.++++|..+...+.+|..
T Consensus 37 ~~~y~rlf~~~P~~~~~F~~~~d~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~~l~~~l~~L~~ 103 (159)
T 1hlm_A 37 ADVFIRIFHNDPTAQRKFPQMAGLSPAELRTSRQMHAHAIRVSALMTTYIDEMDTEVLPELLATLTR 103 (159)
T ss_dssp HHHHHHHTTTCSTTTTSSTTTTTSCSTTCSCCHHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHhcccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35788888 58999998843 66666444444444455666666667777777755
No 51
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=20.84 E-value=1.4e+02 Score=23.60 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=28.5
Q ss_pred HHHHHhcC-CHHHHhhcC-------------CHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ-------------SPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ-------------DPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|++.+--..+..==..+.++++|++ ..+.+|..
T Consensus 27 ~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld~~~--~~l~~L~~ 91 (151)
T 1a6m_A 27 DILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHE--AELKPLAQ 91 (151)
T ss_dssp HHHHHHHHHCHHHHTTCTTTTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTCCH--HHHHHHHH
T ss_pred HHHHHHHHHChhHHHHhHhhcCCCcHHHhcCCHHHHHHHHHHHHHHHHHHHccCCHH--HHHHHHHH
Confidence 46777775 677777763 34444433333333334456667766 66666654
No 52
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=20.41 E-value=1.2e+02 Score=25.31 Aligned_cols=53 Identities=15% Similarity=0.307 Sum_probs=31.8
Q ss_pred HHHHHhcC-CHHHHhhcC-------------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ-------------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ-------------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +|+++..|. ||++..--.-+..==..+.++++|+. +...+.+|..
T Consensus 47 ~~y~rlF~~~P~~k~~F~~f~d~~~~~~l~~n~~~~~h~~~v~~al~~~v~~Ldd~~~l~~~l~~L~~ 114 (193)
T 2dc3_A 47 AILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGK 114 (193)
T ss_dssp HHHHHHHHHCGGGGGGCTTTTTCCCHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHhccCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56777775 788887773 44444433334433445566777765 5666666654
No 53
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=20.30 E-value=1e+02 Score=24.33 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=31.4
Q ss_pred HHHHHHhcC-CHHHHhhc------------CCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 022173 239 EEVITKMMA-NPEIALGF------------QSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 292 (301)
Q Consensus 239 eE~~skiM~-DPEI~aam------------QDPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~a 292 (301)
.+.+.+++. +||++..| .||++..--.-+..==..+.++++|..+...+.+|..
T Consensus 37 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld~~~l~~~l~~L~~ 103 (158)
T 1hlb_A 37 TDVFIRIFAYDPSAQNKFPQMAGMSASQLRSSRQMQAHAIRVSSIMSEYVEELDSDILPELLATLAR 103 (158)
T ss_dssp HHHHHHHHHHCTHHHHTSGGGTTCCHHHHTTCHHHHHHHHHHHHHHHHHHTTCCTTSHHHHTHHHHH
T ss_pred HHHHHHHHHHCHHHHHHhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 456777776 78888777 3344444333333333445566666556677777654
No 54
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=20.26 E-value=70 Score=29.41 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=14.8
Q ss_pred HHHhhcCHHHHHHHHHHHH
Q 022173 274 IIKYQNDKEVMSVITKIAE 292 (301)
Q Consensus 274 i~KYmsNPkVm~~IqKL~a 292 (301)
+.+..+||.|.+.|..|+.
T Consensus 158 l~~~tdDp~vkd~L~fLi~ 176 (266)
T 1o9i_A 158 LYSMTEDEGVRDMLKFLLA 176 (266)
T ss_dssp HHTTCCCHHHHHHHHHHHH
T ss_pred HHHhcCChhHHHHHHHHHH
Confidence 3445579999999998876
No 55
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=20.07 E-value=1.3e+02 Score=23.57 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=32.6
Q ss_pred HHHHHhcC-CHHHHhhcC-------------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGFQ-------------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aamQ-------------DPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
+.+.+++. +||++..|. +|++.+--..+..==..+.++++|+. +...+.+|..
T Consensus 36 ~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~ 103 (149)
T 2lhb_A 36 DILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSG 103 (149)
T ss_dssp HHHHHHHHHCGGGGGGCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHhHHHHhhhhcCCCCHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56777775 788888873 45554444444433344566777766 5566677654
Done!