Query 022173
Match_columns 301
No_of_seqs 122 out of 207
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 15:08:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022173.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022173hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f4mb1 a.189.1.1 (B:275-332) 45.1 12 0.00089 25.8 4.1 18 256-273 7-24 (58)
2 d2f4mb1 a.189.1.1 (B:275-332) 38.7 7.4 0.00054 27.0 2.1 32 157-205 3-34 (58)
3 d1jl7a_ a.1.1.2 (A:) Glycera g 35.0 26 0.0019 25.4 4.9 53 240-292 29-88 (147)
4 d3d1kb1 a.1.1.2 (B:1-146) Hemo 27.4 94 0.0069 22.6 7.1 48 153-205 25-73 (146)
5 d3sdha_ a.1.1.2 (A:) Hemoglobi 25.7 41 0.003 24.4 4.6 53 240-292 34-98 (145)
6 d1ulya_ a.4.5.58 (A:) Hypothet 24.5 14 0.001 28.4 1.7 49 244-292 5-58 (190)
7 d1u5ta1 a.4.5.54 (A:20-164) Va 24.3 16 0.0012 29.1 2.1 21 186-206 35-55 (145)
8 d2lhba_ a.1.1.2 (A:) Lamprey g 24.2 46 0.0033 24.5 4.6 53 240-292 36-103 (149)
9 d1hlba_ a.1.1.2 (A:) Hemoglobi 22.4 41 0.003 24.9 4.1 54 239-292 36-102 (157)
10 d1sctb_ a.1.1.2 (B:) Hemoglobi 22.4 93 0.0068 22.5 6.1 53 240-292 36-100 (150)
11 d1x9fc_ a.1.1.2 (C:) Extracell 21.0 70 0.0051 23.4 5.1 53 240-292 36-98 (149)
No 1
>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.08 E-value=12 Score=25.80 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHhhChHH
Q 022173 256 QSPRVQAAIMECSQNPMN 273 (301)
Q Consensus 256 QDPeV~aALqDi~qNPaa 273 (301)
++|.+++.=+-|++||..
T Consensus 7 ~~PqFq~lR~~vq~nP~~ 24 (58)
T d2f4mb1 7 NQPQFQQMRQIIQQNPSL 24 (58)
T ss_dssp TCHHHHHHHHHHHHCGGG
T ss_pred cChHHHHHHHHHHHCHHH
Confidence 444444444444444433
No 2
>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.72 E-value=7.4 Score=26.96 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=21.5
Q ss_pred HHhhhCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhccC
Q 022173 157 EKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCE 205 (301)
Q Consensus 157 ~~Mm~nP~~Qqm~ypylPe~MRNp~tfk~MlqNP~~r~qL~~Ml~~mgg 205 (301)
+-+.+||+|+ +.=...-+||++ |..+|.++|.
T Consensus 3 ~~Lr~~PqFq--------------~lR~~vq~nP~~---L~~lLqql~~ 34 (58)
T d2f4mb1 3 EFLRNQPQFQ--------------QMRQIIQQNPSL---LPALLQQIGR 34 (58)
T ss_dssp GGGTTCHHHH--------------HHHHHHHHCGGG---HHHHHHHHHH
T ss_pred HHHhcChHHH--------------HHHHHHHHCHHH---HHHHHHHHHh
Confidence 4467788888 444566678877 6666666554
No 3
>d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]}
Probab=35.05 E-value=26 Score=25.36 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=39.3
Q ss_pred HHHHHhcC-CHHHHhhc-----CCHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGF-----QSPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aam-----QDPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
..+.+++. +|+++.+| .+|++..-...+.+==..+.+.++|++ +...+.+|..
T Consensus 29 ~~f~rlF~~~P~~~~~F~~~~~~~~~~~~h~~~v~~~l~~~i~~l~d~~~l~~~l~~lg~ 88 (147)
T d1jl7a_ 29 ECLSKFISAHPEMAAVFGFSGASDPGVAELGAKVLAQIGVAVSHLGDEGKMVAEMKAVGV 88 (147)
T ss_dssp HHHHHHHHHCGGGHHHHTCSSTTCHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 46778887 99999999 589987776666666667777888877 5555666644
No 4
>d3d1kb1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}
Probab=27.38 E-value=94 Score=22.65 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=33.7
Q ss_pred HHHHHHhh-hCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhccC
Q 022173 153 VDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCE 205 (301)
Q Consensus 153 ~~~l~~Mm-~nP~~Qqm~ypylPe~MRNp~tfk~MlqNP~~r~qL~~Ml~~mgg 205 (301)
...+.+|+ .+|+.+.+- | .+++-+..+.|.+||+++.+-..++..++.
T Consensus 25 ~~~f~rlF~~~P~~~~~F----~-~f~~~~~~~~l~~~~~l~~Ha~~V~~~l~~ 73 (146)
T d3d1kb1 25 PKALSRCLVVYPWTQRYF----S-GFGNLYNAEGIMSNANVAAHGIKVLHGLDR 73 (146)
T ss_dssp HHHHHHHHHHSGGGGGGG----T-TSSCCSSHHHHHHCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhChHHHHhc----c-ccCCCCCHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34455555 478888443 2 244445667899999999999999998775
No 5
>d3sdha_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}
Probab=25.73 E-value=41 Score=24.43 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=33.5
Q ss_pred HHHHHhcC-CHHHHhhc----------CCHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGF----------QSPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aam----------QDPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
..+.+++. +||++..| ++|.++.--.-+..-=..+.++++|++ +...+.+|..
T Consensus 34 ~~f~~lF~~~P~~~~~F~~~~~~~~l~~~~~~~~H~~~v~~~l~~~v~~ldd~~~l~~~l~~lg~ 98 (145)
T d3sdha_ 34 ALMTTLFADNQETIGYFKRLGNVSQGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKFAV 98 (145)
T ss_dssp HHHHHHHHHCGGGGGGGGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHhhccccccccCHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 46777777 88888888 456665544444444445666777776 3466666644
No 6
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.52 E-value=14 Score=28.41 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=38.1
Q ss_pred HhcCCHHHHhhcCCHHHHHHHHHHhhChHHH---HHhh--cCHHHHHHHHHHHH
Q 022173 244 KMMANPEIALGFQSPRVQAAIMECSQNPMNI---IKYQ--NDKEVMSVITKIAE 292 (301)
Q Consensus 244 kiM~DPEI~aamQDPeV~aALqDi~qNPaai---~KYm--sNPkVm~~IqKL~a 292 (301)
++..||+++.++.||.=..||.-+.+.|..+ .++. +=+.|..-|.+|..
T Consensus 5 ~~~~d~~~~~~l~~p~R~~Il~~L~~~~~s~~ela~~lg~s~~~v~~hl~~L~~ 58 (190)
T d1ulya_ 5 KVITDPEVIKVMLEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKE 58 (190)
T ss_dssp EEECCHHHHHHHHSHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred eecCHHHHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678999999999999999999887777664 4444 44567777888755
No 7
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.25 E-value=16 Score=29.08 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=18.5
Q ss_pred HhhChHHHHHHHHHHHhccCC
Q 022173 186 MLQNPEYRKQLQEMLDGMCES 206 (301)
Q Consensus 186 MlqNP~~r~qL~~Ml~~mgg~ 206 (301)
.-.||+||.+..+|-+++|-.
T Consensus 35 I~~np~FR~~F~~MC~~iGVD 55 (145)
T d1u5ta1 35 LQASPEFRSKFMHMCSSIGID 55 (145)
T ss_dssp TTTCHHHHHHHHHHHHHHTCC
T ss_pred hhcCHHHHHHHHHHHHHhCCC
Confidence 347999999999999999874
No 8
>d2lhba_ a.1.1.2 (A:) Lamprey globin {Sea lamprey (Petromyzon marinus) [TaxId: 7757]}
Probab=24.24 E-value=46 Score=24.53 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=37.6
Q ss_pred HHHHHhcC-CHHHHhhc-------------CCHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGF-------------QSPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aam-------------QDPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
..+.+++. +||++..| +||++.+--.-+..=-..+.+.++|++ +..++.+|..
T Consensus 36 ~~f~~lF~~~P~~~~~F~~f~~~~~~~~l~~~~~~~~Ha~~v~~~l~~~V~~Ldd~~~l~~~l~~Lg~ 103 (149)
T d2lhba_ 36 DILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSG 103 (149)
T ss_dssp HHHHHHHHHCGGGGGGCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHhHhccCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 45777776 88888877 467776666666666667778888884 5567777755
No 9
>d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]}
Probab=22.35 E-value=41 Score=24.94 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=32.3
Q ss_pred HHHHHHhcC-CHHHHhhc------------CCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 022173 239 EEVITKMMA-NPEIALGF------------QSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 292 (301)
Q Consensus 239 eE~~skiM~-DPEI~aam------------QDPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~a 292 (301)
...+.+++. +|+++.+| .+|+++.-...+..==..+.+.++++++...+.+|..
T Consensus 36 ~~~f~~lF~~~P~~~~~F~~f~~~~~~~l~~~~~~~~H~~~v~~~l~~~v~~lD~~~l~~~l~~lg~ 102 (157)
T d1hlba_ 36 TDVFIRIFAYDPSAQNKFPQMAGMSASQLRSSRQMQAHAIRVSSIMSEYVEELDSDILPELLATLAR 102 (157)
T ss_dssp HHHHHHHHHHCTHHHHTSGGGTTCCHHHHTTCHHHHHHHHHHHHHHHHHHTTCCTTSHHHHTHHHHH
T ss_pred HHHHHHHHHHCHHHHHhcccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhh
Confidence 456778777 88888887 3466555444444333344455555566666666644
No 10
>d1sctb_ a.1.1.2 (B:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}
Probab=22.35 E-value=93 Score=22.47 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=34.6
Q ss_pred HHHHHhcC-CHHHHhhc----------CCHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGF----------QSPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aam----------QDPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
..+.+++. +|+++..| .+|.+..-..-+.+==..+.+.++||+ +...+.+|..
T Consensus 36 ~~f~~lF~~~P~~k~~F~~~~~~~~~~~~~~~~~h~~~v~~~l~~~V~~ldd~~~l~~~l~~lg~ 100 (150)
T d1sctb_ 36 MLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDDVERLKCVVEKFAV 100 (150)
T ss_dssp HHHHHHHHHCHHHHHHTGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHhhccCccccccCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 46777777 88888888 467766655555544455666777776 4455666543
No 11
>d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=20.96 E-value=70 Score=23.36 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=33.2
Q ss_pred HHHHHhcC-CHHHHhhc--------CCHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 022173 240 EVITKMMA-NPEIALGF--------QSPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 292 (301)
Q Consensus 240 E~~skiM~-DPEI~aam--------QDPeV~aALqDi~qNPaai~KYmsNPk-Vm~~IqKL~a 292 (301)
..+.+++. +|+++..| ++|++++--.-+.+==..+.+.++|++ +...+.+|..
T Consensus 36 ~~f~~lF~~~P~~k~~F~~~~~~~~~~~~~~~Ha~~v~~~l~~~I~~ldd~~~l~~~L~~lg~ 98 (149)
T d1x9fc_ 36 LLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAH 98 (149)
T ss_dssp HHHHHHHHHSTTHHHHTGGGTGGGTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChhHHHhcccccccccccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45777777 88888888 567776644444444445556666666 4455666644
Done!