BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022174
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
Length = 262
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 148/271 (54%), Gaps = 28/271 (10%)
Query: 21 DVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKM 79
++ N + AE+L++ A +GA ++++ ELF+ GY F RE+ F A+ + T +
Sbjct: 15 ELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNF--ESREEVFDVAQQIPEGETTTFL 72
Query: 80 QELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPG 139
ELA+ELG+ + E++ N YNS ++ G +G YRK H+ Y+EK +F PG
Sbjct: 73 XELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGY-IGKYRKIHL----FYREKVFFEPG 127
Query: 140 DTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHW 199
D GFKVF FAK+GV IC+D +FPE+AR + L+GAEI+ +P + +
Sbjct: 128 DLGFKVFDIGFAKVGVXICFDWFFPESARTLALKGAEIIAHPANL----------VXPYA 177
Query: 200 RRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEA 259
R A N V + ++R+G+E + F G S IA P E+++ A + EE
Sbjct: 178 PRAXPIRALENRVYTITADRVGEE--------RGLKFIGKSLIASPKAEVLSIASETEEE 229
Query: 260 VLVAQFDLDKLKSKR--SSWGVFRDRRPELY 288
+ V + DL+ ++KR +F+DRR E Y
Sbjct: 230 IGVVEIDLNLARNKRLNDXNDIFKDRREEYY 260
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 147/267 (55%), Gaps = 28/267 (10%)
Query: 25 NLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83
N + AE+L++ A +GA ++++ ELF+ GY F RE+ F+ A+ + T + ++A
Sbjct: 19 NYSKAEKLIKEASKQGAQLVVLPELFDTGYNF--ETREEVFEIAQKIPEGETTTFLMDVA 76
Query: 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF 143
++ GV + E+ + YNS ++ G +G YRK H+ Y+EKF+F PGD GF
Sbjct: 77 RDTGVYIVAGTAEKDGDVLYNSAVVVGPRGF-IGKYRKIHL----FYREKFFFEPGDLGF 131
Query: 144 KVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVM 203
+VF F K+GV I +D +FPE+AR + L+GA+++ +P + + R M
Sbjct: 132 RVFDLGFMKVGVMIXFDWFFPESARTLALKGADVIAHPANL----------VMPYAPRAM 181
Query: 204 QGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVA 263
A N V V ++R+G+E + F G S IA P E+++ A + EE V VA
Sbjct: 182 PIRALENKVYTVTADRVGEE--------RGLKFIGKSLIASPKAEVLSMASETEEEVGVA 233
Query: 264 QFDLDKLKSKRSS--WGVFRDRRPELY 288
+ DL +++KR + +F+DRR E Y
Sbjct: 234 EIDLSLVRNKRINDLNDIFKDRREEYY 260
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|E Chain E, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|F Chain F, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|G Chain G, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|H Chain H, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
Length = 405
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 140/304 (46%), Gaps = 26/304 (8%)
Query: 5 KRREVVVSALQFACTDDVSTNLAT--------AERLVRAAHGKGANIILIQELFE-GYYF 55
KRR V V A+Q + + + + +++AA G NI+ QE + + F
Sbjct: 69 KRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF 128
Query: 56 CQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE---EANNAHYNSIAIIDAD 112
C ++ + + A+ ++ PT + ELAK +V+ S E E +N+ +I
Sbjct: 129 CTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNS 188
Query: 113 GSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVL 172
G LG +RK+HIP + E Y+ G+TG VF+T+F K+ V IC+ + P+ L
Sbjct: 189 GRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGL 248
Query: 173 QGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHG-- 230
GAEI+F P+A G S W + A AN V NR+G E E+
Sbjct: 249 NGAEIVFNPSAT------IGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYTSG 302
Query: 231 ------KSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 284
K FYG+S++A P G + ++ +LV + DL+ + + WG +R
Sbjct: 303 DGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQR 362
Query: 285 PELY 288
LY
Sbjct: 363 VPLY 366
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 135/286 (47%), Gaps = 35/286 (12%)
Query: 32 LVRAAHGKGANIILIQEL-----FEGYYFC-QAQREDFFQRAKPYKDHPTILKMQELAKE 85
++ A +GAN I+ EL F ++F +A+ + F++ P P + + E A E
Sbjct: 30 MLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMP---GPVVRPLFEKAAE 86
Query: 86 LGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EK 133
LG+ + + E +N+ ++D G +G YRK H+P Y+ EK
Sbjct: 87 LGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK 146
Query: 134 FYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILF----YPTAIGSEPQ 189
YF PGD GF V+ AK+G+ IC D+ +PEA R M L+GAEI+ PT PQ
Sbjct: 147 RYFEPGDLGFPVYDVDAAKMGMFICNDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQ 206
Query: 190 DDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEI 249
D L S H MQ + N A+ ++G E G+S I PTGEI
Sbjct: 207 HDHLTSFHHLLS-MQAGSYQNGAWSAAAGKVGME--------ENCMLLGHSCIVAPTGEI 257
Query: 250 VAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD-RRPELYKVLLTL 294
VA E+ V+ A DLD+ + R F+ R+P+ Y ++ L
Sbjct: 258 VALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL 303
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 143/314 (45%), Gaps = 50/314 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
+ + + RE VV L D+ TN A+ +G N I+ EL F ++F
Sbjct: 15 IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56 C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
+A+ + F++ P P + + E A ELG+ + + E +N+ ++D
Sbjct: 60 TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGVAICWDQW 162
G +G YRK H+P Y+ EK YF PGD GF V+ AK+G+ IC D+
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRR 176
Query: 163 FPEAARAMVLQGAEILF----YPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASN 218
+PE R M L+GAEI+ PT PQ D L S H MQ + N A+
Sbjct: 177 WPETWRVMGLKGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLS-MQAGSYQNGAWSAAAG 235
Query: 219 RIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWG 278
++G E G+S I PTGEIVA E+ V+ A DLD+ + R
Sbjct: 236 KVGME--------EGCMLLGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREHIF 287
Query: 279 VFR-DRRPELYKVL 291
F+ R+P+ Y ++
Sbjct: 288 NFKAHRQPQHYGLI 301
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 143/314 (45%), Gaps = 50/314 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
+ + + RE VV L D+ TN A+ +G N I+ EL F ++F
Sbjct: 15 IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56 C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
+A+ + F++ P P + + E A ELG+ + + E +N+ ++D
Sbjct: 60 TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGVAICWDQW 162
G +G YRK H+P Y+ EK YF PGD GF V+ AK+G+ IC D+
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRR 176
Query: 163 FPEAARAMVLQGAEILF----YPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASN 218
+PE R M L+GAEI+ PT PQ D L S H MQ + N A+
Sbjct: 177 WPETWRVMGLKGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLS-MQAGSYQNGAWSAAAG 235
Query: 219 RIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWG 278
++G E G+S I PTGEIVA E+ V+ A DLD+ + R
Sbjct: 236 KVGME--------EGCMLLGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREHIF 287
Query: 279 VFR-DRRPELYKVL 291
F+ R+P+ Y ++
Sbjct: 288 NFKAHRQPQHYGLI 301
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 143/314 (45%), Gaps = 50/314 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
+ + + RE VV L D+ TN A+ +G N I+ EL F ++F
Sbjct: 15 IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56 C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
+A+ + F++ P P + + E A ELG+ + + E +N+ ++D
Sbjct: 60 TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGVAICWDQW 162
G +G YRK H+P Y+ EK YF PGD GF V+ AK+G+ IC D+
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRR 176
Query: 163 FPEAARAMVLQGAEILF----YPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASN 218
+PE R M L+GAEI+ PT PQ D L S H MQ + N A+
Sbjct: 177 WPETWRVMGLKGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLS-MQCGSYQNGAWSAAAG 235
Query: 219 RIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWG 278
++G E G+S I PTGEIVA E+ V+ A DLD+ + R
Sbjct: 236 KVGME--------EGCMLLGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREHIF 287
Query: 279 VFR-DRRPELYKVL 291
F+ R+P+ Y ++
Sbjct: 288 NFKAHRQPQHYGLI 301
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 133/286 (46%), Gaps = 35/286 (12%)
Query: 32 LVRAAHGKGANIILIQEL-----FEGYYFC-QAQREDFFQRAKPYKDHPTILKMQELAKE 85
++ A +GAN I+ EL F ++F +A+ + F++ P P + + E A E
Sbjct: 30 MLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMP---GPVVRPLFEKAAE 86
Query: 86 LGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EK 133
LG+ + + E +N+ ++D G +G YRK H+P Y+ EK
Sbjct: 87 LGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK 146
Query: 134 FYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILF----YPTAIGSEPQ 189
YF PGD GF V+ AK+G+ I D+ +PEA R M L+GAEI+ PT PQ
Sbjct: 147 RYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQ 206
Query: 190 DDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEI 249
D L S H MQ + N A+ + G E G+S I PTGEI
Sbjct: 207 HDHLTSFHHLLS-MQAGSYQNGAWSAAAGKAGME--------ENCMLLGHSCIVAPTGEI 257
Query: 250 VAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD-RRPELYKVLLTL 294
VA E+ V+ A DLD+ + R F+ R+P+ Y ++ L
Sbjct: 258 VALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL 303
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 26/286 (9%)
Query: 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
++ +Q + S NL A LVR A +GANI+ + E F Y +F
Sbjct: 6 LALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPY-----GTTYFPDYAEK 60
Query: 71 KDHPTILKMQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDG 127
+ K+ E+AKE + ++ S EE YN+ ++ DGS L +RK H+ D
Sbjct: 61 IPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDV 120
Query: 128 PG---YQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAI 184
PG +QE +PGD+ F F T + K+G+ IC+D F E A+ +G ++L YP A
Sbjct: 121 PGKITFQESKTLSPGDS-FSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAF 179
Query: 185 GSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAG 244
+ HW + + A N V VA+ ++ K+ +G+S +
Sbjct: 180 ------NLTTGPAHWELLQRARAVDNQV-YVATASPARD------DKASYVAWGHSTVVD 226
Query: 245 PTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKV 290
P G+++ A EE +L + DL KL R + + +R +LY V
Sbjct: 227 PWGQVLTKA-GTEETILYSDIDLKKLAEIRQQIPILKQKRADLYTV 271
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
pdb|1F89|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
Length = 291
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 136/293 (46%), Gaps = 27/293 (9%)
Query: 7 REVVVSALQFA-CTDDVSTNLATAERLVRAAHGKGAN--IILIQELFEGYYFCQAQREDF 63
+++ V+ +Q + + D NL A + A + + ++++ E F Y R+ +
Sbjct: 9 QKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRK-Y 67
Query: 64 FQRAKPYKDHPTILKMQELAKELGVVM---PVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
+ P + ++ + LA + +++ + + + YN+ I + DG + +R
Sbjct: 68 SEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHR 127
Query: 121 KSH-----IPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGA 175
K H IP+G + E +PG+ + TK+ K GV IC+D FPE A +GA
Sbjct: 128 KVHLFDVDIPNGISFHESETLSPGEKSTTI-DTKYGKFGVGICYDMRFPELAMLSARKGA 186
Query: 176 EILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQIT 235
+ YP+A + + HW + + A N V ++ + + + + H
Sbjct: 187 FAMIYPSAFNT------VTGPLHWHLLARSRAVDNQVYVMLCSP-ARNLQSSYHA----- 234
Query: 236 FYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELY 288
YG+S + P G+IVA A + EE ++ A+ D + ++S R + + + RR ++Y
Sbjct: 235 -YGHSIVVDPRGKIVAEAGEGEE-IIYAELDPEVIESFRQAVPLTKQRRFDVY 285
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 27/289 (9%)
Query: 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
++ Q +D+ N A+ ++ A K ++ + E F+ + ++ D
Sbjct: 17 IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMAT--- 73
Query: 71 KDHPTILKMQELAKELGVVMPVSFFEE---ANNAH-YNSIAIIDADGSDLGLYRKSH--- 123
D + K +ELA++ + + + ++ AH +N+ IID+DG Y K H
Sbjct: 74 -DCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFD 132
Query: 124 --IPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYP 181
IP E + G T ++G++IC+D FPE + +GA++L +P
Sbjct: 133 LEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFP 192
Query: 182 TAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSF 241
+A + GL HW +++ A N +VA+ + G + K Q YG+S
Sbjct: 193 SAFT---LNTGL---AHWETLLRARAIENQCYVVAAAQTG-----AHNPKRQ--SYGHSM 239
Query: 242 IAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKV 290
+ P G +VA ++ + A+ DL + + R VF RR +LY +
Sbjct: 240 VVDPWGAVVAQCSERVDMCF-AEIDLSYVDTLREMQPVFSHRRSDLYTL 287
>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From
Nesterenkonia Sp
Length = 283
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 111/272 (40%), Gaps = 28/272 (10%)
Query: 21 DVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKM 79
D NL + A +GA ++L ELF GY Q + ++ + ++
Sbjct: 34 DPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARS-----RL 88
Query: 80 QELAKELGVVMPVSF-FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNP 138
+ +A++ G+ + S E + + D G L Y+K + G +EK F P
Sbjct: 89 RGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLY---GPEEKAAFVP 145
Query: 139 GDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAI-GSEPQDDGLDSRD 197
G+ V ++ + +C+D FPE RA +GA+++ PTA+ G E G+
Sbjct: 146 GEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVPGI---- 201
Query: 198 HWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKE 257
++ A N + L +N G E + F G S + GP G+ + E
Sbjct: 202 ----LLPARAVENGITLAYANHCGPE--------GGLVFDGGSVVVGPAGQPLGEL-GVE 248
Query: 258 EAVLVAQFDLDKLKSKRSSWGVFRDRRPELYK 289
+LV + S +DRR EL++
Sbjct: 249 PGLLVVDLPDQSQDAGSDSADYLQDRRAELHR 280
>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
pdb|3P8K|B Chain B, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
Length = 281
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 90/193 (46%), Gaps = 21/193 (10%)
Query: 99 NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQ-TKFAKIGVAI 157
NN +N+ ++ G + Y K H+ P +E + G+ + FQ + + I
Sbjct: 108 NNQIFNTAFSVNKSGQLINEYDKVHLV--PXLREHEFLTAGEYVAEPFQLSDGTYVTQLI 165
Query: 158 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSR-DHWRRVMQGHAGANVVPLVA 216
C+D FPE R GA+I FY + P SR HW +++ A N ++
Sbjct: 166 CYDLRFPELLRYPARSGAKIAFY---VAQWPX-----SRLQHWHSLLKARAIENNXFVIG 217
Query: 217 SNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSS 276
+N G + G ++ + G+S + P G++V ++ + +L +L++++ +R +
Sbjct: 218 TNSTGFD------GNTE--YAGHSIVINPNGDLVGELNESAD-ILTVDLNLNEVEQQREN 268
Query: 277 WGVFRDRRPELYK 289
VF+ + +LYK
Sbjct: 269 IPVFKSIKLDLYK 281
>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
pdb|4F4H|B Chain B, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
Length = 565
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 71/164 (43%), Gaps = 15/164 (9%)
Query: 103 YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQW 162
YN+ ++I G G YRK +P+ + EK YF D VF+ K GV IC D W
Sbjct: 116 YNAASLI-VGGEVAGTYRKQDLPNTEVFDEKRYFAT-DAAPYVFELNGVKFGVVICEDVW 173
Query: 163 FPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGK 222
AA+ GA++L P D + R R G +P+V N +G
Sbjct: 174 HASAAQLAKAAGAQVLIVPNGSPYHMNKDAV--RIDILRARIRETG---LPMVYVNLVG- 227
Query: 223 EIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFD 266
G+ ++ F G SF+ GE+VA EE + +FD
Sbjct: 228 -------GQDELVFDGGSFVLDGAGELVAKMPQFEEGNAIVEFD 264
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYU|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYV|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2DYV|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 106/267 (39%), Gaps = 36/267 (13%)
Query: 10 VVSALQFACT-----DDVSTNLATAERLVRAAHGKGAN------IILIQELFEGYYFCQA 58
+V+A+QF D+ N+ E ++R H A II + +G +
Sbjct: 15 LVAAIQFPVPIVNSRKDIDHNI---ESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKW 71
Query: 59 QREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 118
E+F P K+ K + AK GV + ++N YN+ IID G +
Sbjct: 72 LSEEFLLDV-PGKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILK 130
Query: 119 YRKSHIPDGPGYQEKFYFNPGDTGFKVFQ-TKFAKIGVAICWDQWFPEAARAMVLQGAEI 177
YRK P P E +Y PGD G V + +K+ V IC D PE AR +G +
Sbjct: 131 YRKL-FPWNP--IEPWY--PGDLGMPVCEGPGGSKLAVCICHDGMIPELAREAAYKGCNV 185
Query: 178 LFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQI-TF 236
+ ++ D W + +A N++ V+ N G + + G+ QI F
Sbjct: 186 YIRISGYSTQ-------VNDQWILTNRSNAWHNLMYTVSVNLAGYDNVFYYFGEGQICNF 238
Query: 237 YGNSFIAGP-------TGEIVAAADDK 256
G + + G TGEI D
Sbjct: 239 DGTTLVQGHRNPWEIVTGEIYPKMADN 265
>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 105/267 (39%), Gaps = 36/267 (13%)
Query: 10 VVSALQFACT-----DDVSTNLATAERLVRAAHGKGAN------IILIQELFEGYYFCQA 58
+V+A+QF D+ N+ E ++R H A II + +G +
Sbjct: 15 LVAAIQFPVPIVNSRKDIDHNI---ESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKW 71
Query: 59 QREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 118
E+F P K+ K + AK GV + ++N YN+ IID G +
Sbjct: 72 LSEEFLLDV-PGKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILK 130
Query: 119 YRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGVAICWDQWFPEAARAMVLQGAEI 177
YRK P P E +Y PGD G V + +K+ V I D PE AR +G +
Sbjct: 131 YRKL-FPWNP--IEPWY--PGDLGMPVCEGPGGSKLAVCISHDGMIPELAREAAYKGCNV 185
Query: 178 LFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQI-TF 236
+ ++ D W + +A N++ V+ N G + + G+ QI F
Sbjct: 186 YIRISGYSTQ-------VNDQWILTNRSNAWHNLMYTVSVNLAGYDNVFYYFGEGQICNF 238
Query: 237 YGNSFIAGP-------TGEIVAAADDK 256
G + + G TGEI D
Sbjct: 239 DGTTLVQGHRNPWEIVTGEIYPKMADN 265
>pdb|2PLQ|A Chain A, Crystal Structure Of The Amidase From Geobacillus Pallidus
Rapc8
Length = 348
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
Query: 99 NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 158
N A YN++ +I+ G + YRK IP P E +Y PGDT + K KI + +C
Sbjct: 112 NKAPYNTLVLINNKGEIVQKYRKI-IPWCP--IEGWY--PGDTTYVTEGPKGLKISLIVC 166
Query: 159 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASN 218
D +PE R ++GAE++ Q +++ + + A AN + +N
Sbjct: 167 DDGNYPEIWRDCAMKGAELIV-------RCQGYMYPAKEQQIMMAKAMAWANNTYVAVAN 219
Query: 219 RIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSS 276
G + + +++G+S I G G + +E + A+ + +++ R +
Sbjct: 220 ATGFDGV--------YSYFGHSAIIGFDGRTLGECGTEENGIQYAEVSISQIRDFRKN 269
>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
pdb|3N05|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
Length = 590
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 103/264 (39%), Gaps = 38/264 (14%)
Query: 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ--AQREDFFQRAKPYKDHPTILK 78
D++ N R R + +GA+++ E+ Y + A R F + ++
Sbjct: 18 DIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARL 77
Query: 79 MQELAKELGVVMPVSFFEEANNAH----------YNSIAIIDADGSDLGLYRKSHIPDGP 128
+E EL V+ V + + + +A N+ A++ L + K H+P+
Sbjct: 78 AEEGFGELPVL--VGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVAL-TFAKHHLPNYG 134
Query: 129 GYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQW-----FPEAARAMVLQGAEILFYPTA 183
+ E YF PGDT + + I +AIC D W P A A GA +L A
Sbjct: 135 VFDEFRYFVPGDT-MPIVRLHGVDIALAICEDLWQDGGRVPAARSA----GAGLLLSVNA 189
Query: 184 IGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIA 243
E D D+R R AG L IG G+ ++ F G+S +
Sbjct: 190 SPYERDKD--DTRLELVRKRAQEAGCTTAYLAM---IG--------GQDELVFDGDSIVV 236
Query: 244 GPTGEIVAAADDKEEAVLVAQFDL 267
GE+VA A E +V DL
Sbjct: 237 DRDGEVVARAPQFSEGCVVLDLDL 260
>pdb|2UXY|A Chain A, Aliphatic Amidase
Length = 341
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 20/181 (11%)
Query: 96 EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
E A YN++ +ID +G + YRK IP P E +Y PG + K KI +
Sbjct: 109 EHPRKAPYNTLVLIDNNGEIVQKYRKI-IPWCP--IEGWY--PGGQTYVSEGPKGMKISL 163
Query: 156 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLV 215
I D +PE R ++GAE++ Q ++D + + A AN +
Sbjct: 164 IIXDDGNYPEIWRDCAMKGAELIV-------RCQGYMYPAKDQQVMMAKAMAWANNCYVA 216
Query: 216 ASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRS 275
+N G + + +++G+S I G G + ++E + AQ L +++ R+
Sbjct: 217 VANAAGFDGV--------YSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSLSQIRDARA 268
Query: 276 S 276
+
Sbjct: 269 N 269
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 109/295 (36%), Gaps = 44/295 (14%)
Query: 17 ACTD-----DVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAKPY 70
ACT D + N A+ + RA H GA + + EL GY +D A
Sbjct: 17 ACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAV-- 74
Query: 71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY 130
+L + + +L V+ V + YN+ +I G+ LG+ KS++P +
Sbjct: 75 --EDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIH-RGAVLGVVPKSYLPTYREF 131
Query: 131 QEKFYFNPGDTGFKVFQTKFAKIG------------------VAICWDQWFPEAARA-MV 171
E+ PGD + A + V IC D + P A
Sbjct: 132 YERRQMAPGDGERGTIRIGGADVAFGTDLLFAASDLPGFVLHVEICEDMFVPMPPSAEAA 191
Query: 172 LQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGK 231
L GA +L + P G R RR++ A A + G+
Sbjct: 192 LAGATVL---ANLSGSPITIG---RAEDRRLLARSASARCLAAYVYAAAGE-----GEST 240
Query: 232 SQITFYGNSFIAGPTGEIVAAADDKEEAVL--VAQFDLDKLKSKRSSWGVFRDRR 284
+ + + G + I G ++A ++ + V VA D + L+S+R G F D R
Sbjct: 241 TDLAWDGQTMI-WENGALLAESERFPKGVRRSVADVDTELLRSERLRMGTFDDNR 294
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
Query: 17 ACTD-----DVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAKPY 70
ACT D + N A+ + RA H GA + + EL GY +D A
Sbjct: 17 ACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAV-- 74
Query: 71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY 130
+L + + +L V+ V + YN+ +I G+ LG+ KS++P +
Sbjct: 75 --EDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIH-RGAVLGVVPKSYLPTYREF 131
Query: 131 QEKFYFNPGD 140
E+ PGD
Sbjct: 132 YERRQMAPGD 141
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDH-PTILKMQELAKELGV 88
AA G+ ++ L+Q+ E YY + + F +R KD P + K++E+ K LG+
Sbjct: 6 AARGEDTSMNLVQKYLENYYDLKKDVKQFVRR----KDSGPVVKKIREMQKFLGL 56
>pdb|2ETS|A Chain A, Crystal Structure Of A Bacterial Domain Of Unknown
Function From Duf1798 Family (Mw1337) From
Staphylococcus Aureus Subsp. Aureus At 2.25 A
Resolution
Length = 128
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 57 QAQREDFFQRAKPYKDH-PTILKMQELAKELGVVMP 91
Q Q DF+Q KPY +H +IL +L +E + +P
Sbjct: 37 QQQDHDFYQTVKPYTEHIDSILNEIKLHREFIIEVP 72
>pdb|3O76|A Chain A, 1.8 Angstroms Molecular Structure Of Mouse Liver
Glutathione S- Transferase Mutant C47a Complexed With
S-(P-Nitrobenzyl)glutathione
pdb|3O76|B Chain B, 1.8 Angstroms Molecular Structure Of Mouse Liver
Glutathione S- Transferase Mutant C47a Complexed With
S-(P-Nitrobenzyl)glutathione
Length = 209
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 56 CQAQREDFFQRAKPYKDHPTILK--MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADG 113
C+A R + + +K+ + MQ L K + + FE+ + Y S AI+ G
Sbjct: 14 CEAMRMLLADQGQSWKEEVVTIDTWMQGLLKPTALYGQLPKFEDGDLTLYQSNAILRHLG 73
Query: 114 SDLGLYRKSH 123
LGLY K+
Sbjct: 74 RSLGLYGKNQ 83
>pdb|3MMG|A Chain A, Crystal Structure Of Tobacco Vein Mottling Virus Protease
pdb|3MMG|B Chain B, Crystal Structure Of Tobacco Vein Mottling Virus Protease
Length = 241
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 198 HWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKE 257
HW G AG+ +V ++ N +G H + T N F+ P + D +
Sbjct: 142 HWITTKDGQAGSPLVSIIDGNILGI------HSLTHTTNGSNYFVEFPEKFVATYLDAAD 195
Query: 258 EAVLVAQFDLDKLKSKRSSWGVF 280
+F+ DK+ SWG F
Sbjct: 196 GWCKNWKFNADKI-----SWGSF 213
>pdb|1GTI|A Chain A, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|B Chain B, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|C Chain C, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|D Chain D, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|E Chain E, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|F Chain F, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
Length = 209
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 56 CQAQREDFFQRAKPYKDHPTILK--MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADG 113
C+A R + + +K+ + MQ L K + + FE+ + Y S AI+ G
Sbjct: 14 CEAMRMLLADQGQSWKEEVVTIDTWMQGLLKPTXLYGQLPKFEDGDLTLYQSNAILRHLG 73
Query: 114 SDLGLYRKSH 123
LGLY K+
Sbjct: 74 RSLGLYGKNQ 83
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAER-----LVRAAHGKGANIILIQELFEGY-- 53
+++GKR V C DV L AER +++A+ G G I E E +
Sbjct: 196 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPI 255
Query: 54 YFCQAQRE-----DFFQRAKPYKDHPTILKMQELAKELG 87
F Q Q E F + + H L++Q LA + G
Sbjct: 256 LFRQVQSEIPGSPIFLMKLAQHARH---LEVQILADQYG 291
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAER-----LVRAAHGKGANIILIQELFEGY-- 53
+++GKR V C DV L AER +++A+ G G I E E +
Sbjct: 212 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPI 271
Query: 54 YFCQAQRE-----DFFQRAKPYKDHPTILKMQELAKELG 87
F Q Q E F + + H L++Q LA + G
Sbjct: 272 LFRQVQSEIPGSPIFLMKLAQHARH---LEVQILADQYG 307
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAER-----LVRAAHGKGANIILIQELFEGY-- 53
+++GKR V C DV L AER +++A+ G G I E E +
Sbjct: 212 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPI 271
Query: 54 YFCQAQRE-----DFFQRAKPYKDHPTILKMQELAKELG 87
F Q Q E F + + H L++Q LA + G
Sbjct: 272 LFRQVQSEIPGSPIFLMKLAQHARH---LEVQILADQYG 307
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAER-----LVRAAHGKGANIILIQELFEGY-- 53
+++GKR V C DV L AER +++A+ G G I E E +
Sbjct: 206 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPI 265
Query: 54 YFCQAQRE-----DFFQRAKPYKDHPTILKMQELAKELG 87
F Q Q E F + + H L++Q LA + G
Sbjct: 266 LFRQVQSEIPGSPIFLMKLAQHARH---LEVQILADQYG 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,590,987
Number of Sequences: 62578
Number of extensions: 416755
Number of successful extensions: 988
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 35
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)