Query 022174
Match_columns 301
No_of_seqs 125 out of 1210
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:35:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03381 agmatine_aguB N-carb 100.0 3.3E-56 7.2E-61 393.0 29.2 278 9-290 1-278 (279)
2 PLN02747 N-carbamolyputrescine 100.0 1.1E-55 2.5E-60 392.5 32.1 294 4-297 2-295 (296)
3 cd07587 ML_beta-AS mammalian-l 100.0 2.6E-54 5.7E-59 390.6 30.4 282 6-293 61-362 (363)
4 cd07568 ML_beta-AS_like mammal 100.0 1.2E-53 2.6E-58 378.1 29.8 276 7-293 2-286 (287)
5 PLN00202 beta-ureidopropionase 100.0 8.8E-53 1.9E-57 384.4 30.9 282 6-294 84-384 (405)
6 cd07573 CPA N-carbamoylputresc 100.0 1.9E-52 4.2E-57 369.9 30.1 280 9-292 1-283 (284)
7 PLN02504 nitrilase 100.0 1E-51 2.2E-56 372.1 27.8 277 7-298 23-329 (346)
8 cd07564 nitrilases_CHs Nitrila 100.0 1.2E-51 2.7E-56 366.4 27.7 276 9-293 1-296 (297)
9 PRK10438 C-N hydrolase family 100.0 9.7E-51 2.1E-55 353.2 27.1 252 8-288 3-255 (256)
10 cd07569 DCase N-carbamyl-D-ami 100.0 2.9E-50 6.3E-55 358.6 28.8 277 8-292 3-301 (302)
11 cd07576 R-amidase_like Pseudom 100.0 3.5E-50 7.6E-55 349.9 26.5 253 10-286 1-254 (254)
12 cd07583 nitrilase_5 Uncharacte 100.0 5.1E-50 1.1E-54 348.7 27.2 251 10-284 1-253 (253)
13 cd07580 nitrilase_2 Uncharacte 100.0 5.2E-50 1.1E-54 351.5 26.5 264 10-288 1-268 (268)
14 cd07584 nitrilase_6 Uncharacte 100.0 7.9E-50 1.7E-54 348.5 27.3 254 10-284 1-257 (258)
15 PLN02798 nitrilase 100.0 1.9E-49 4E-54 350.8 29.0 267 3-288 5-282 (286)
16 cd07586 nitrilase_8 Uncharacte 100.0 2.3E-49 5E-54 347.6 26.4 264 10-289 1-266 (269)
17 cd07565 aliphatic_amidase alip 100.0 6.8E-49 1.5E-53 347.1 28.8 258 9-293 1-269 (291)
18 cd07579 nitrilase_1_R2 Second 100.0 1.2E-49 2.7E-54 350.0 23.6 252 10-289 1-269 (279)
19 cd07572 nit Nit1, Nit 2, and r 100.0 7.1E-49 1.5E-53 343.8 27.3 257 10-284 1-265 (265)
20 cd07585 nitrilase_7 Uncharacte 100.0 1.8E-48 3.9E-53 340.5 27.2 258 10-288 1-261 (261)
21 cd07577 Ph0642_like Pyrococcus 100.0 9E-49 1.9E-53 342.0 24.7 256 10-288 1-259 (259)
22 cd07581 nitrilase_3 Uncharacte 100.0 6.2E-48 1.3E-52 336.0 27.6 253 11-284 1-255 (255)
23 cd07575 Xc-1258_like Xanthomon 100.0 1.1E-47 2.4E-52 333.7 27.2 249 9-285 1-250 (252)
24 COG0388 Predicted amidohydrola 100.0 2.5E-47 5.4E-52 335.5 28.5 264 8-288 2-267 (274)
25 cd07570 GAT_Gln-NAD-synth Glut 100.0 4.3E-48 9.3E-53 338.1 22.3 252 10-283 1-256 (261)
26 cd07578 nitrilase_1_R1 First n 100.0 2.1E-47 4.6E-52 333.1 26.0 254 9-287 1-258 (258)
27 PRK13286 amiE acylamide amidoh 100.0 1.1E-46 2.4E-51 338.1 27.8 260 6-293 10-282 (345)
28 cd07567 biotinidase_like bioti 100.0 4.4E-47 9.6E-52 334.7 23.5 242 9-272 1-280 (299)
29 KOG0807 Carbon-nitrogen hydrol 100.0 2.4E-47 5.3E-52 310.4 19.0 265 9-291 16-291 (295)
30 PRK13287 amiF formamidase; Pro 100.0 4.8E-46 1E-50 333.6 28.7 260 7-293 12-281 (333)
31 cd07574 nitrilase_Rim1_like Un 100.0 1.6E-46 3.4E-51 331.4 25.0 264 9-287 1-280 (280)
32 cd07582 nitrilase_4 Uncharacte 100.0 2.1E-45 4.6E-50 326.1 27.5 260 10-280 2-286 (294)
33 cd07197 nitrilase Nitrilase su 100.0 3.1E-45 6.8E-50 318.3 27.6 250 11-282 1-251 (253)
34 PRK13981 NAD synthetase; Provi 100.0 8.4E-44 1.8E-48 339.6 26.2 238 9-269 1-243 (540)
35 PRK02628 nadE NAD synthetase; 100.0 6.7E-43 1.5E-47 339.4 27.1 260 6-284 10-295 (679)
36 cd07571 ALP_N-acyl_transferase 100.0 5.5E-43 1.2E-47 306.8 22.9 226 9-269 1-251 (270)
37 PLN02339 NAD+ synthase (glutam 100.0 1.6E-41 3.6E-46 329.0 23.0 258 8-283 3-290 (700)
38 KOG0806 Carbon-nitrogen hydrol 100.0 1.1E-40 2.3E-45 284.5 16.1 272 7-293 12-296 (298)
39 cd07566 ScNTA1_like Saccharomy 100.0 2E-39 4.4E-44 286.4 21.7 226 10-244 1-265 (295)
40 KOG0805 Carbon-nitrogen hydrol 100.0 1E-36 2.2E-41 249.1 21.2 278 6-298 15-322 (337)
41 PRK00302 lnt apolipoprotein N- 100.0 2.1E-36 4.6E-41 286.9 21.1 227 7-268 218-470 (505)
42 TIGR00546 lnt apolipoprotein N 100.0 5.2E-36 1.1E-40 275.9 19.6 208 7-249 158-391 (391)
43 PF00795 CN_hydrolase: Carbon- 100.0 2E-34 4.3E-39 239.2 16.1 173 10-183 1-186 (186)
44 KOG0808 Carbon-nitrogen hydrol 100.0 7.7E-31 1.7E-35 216.3 21.9 280 8-293 73-372 (387)
45 PRK12291 apolipoprotein N-acyl 100.0 4.5E-30 9.8E-35 236.6 20.9 196 9-247 195-413 (418)
46 COG0815 Lnt Apolipoprotein N-a 100.0 3E-28 6.5E-33 228.5 21.7 228 7-269 226-482 (518)
47 PRK13825 conjugal transfer pro 99.9 4.1E-24 8.8E-29 194.4 18.0 188 9-219 186-387 (388)
48 KOG2303 Predicted NAD synthase 99.8 1.7E-21 3.8E-26 174.0 7.8 252 5-276 1-284 (706)
49 cd07565 aliphatic_amidase alip 84.3 7.2 0.00016 34.5 8.7 67 34-117 163-231 (291)
50 cd07585 nitrilase_7 Uncharacte 78.9 12 0.00026 32.1 8.1 71 34-117 150-222 (261)
51 cd07576 R-amidase_like Pseudom 78.7 14 0.00031 31.5 8.4 66 35-117 153-220 (254)
52 cd07567 biotinidase_like bioti 77.7 9.8 0.00021 33.9 7.2 68 34-118 190-259 (299)
53 cd07580 nitrilase_2 Uncharacte 77.4 15 0.00033 31.7 8.3 72 34-116 154-227 (268)
54 PLN02798 nitrilase 77.2 10 0.00022 33.3 7.2 79 166-251 34-118 (286)
55 cd07584 nitrilase_6 Uncharacte 75.5 19 0.00041 30.9 8.3 67 33-116 155-223 (258)
56 cd07570 GAT_Gln-NAD-synth Glut 74.9 18 0.00039 31.1 8.1 67 36-117 158-226 (261)
57 cd07572 nit Nit1, Nit 2, and r 73.5 16 0.00034 31.5 7.3 69 32-116 161-232 (265)
58 cd07586 nitrilase_8 Uncharacte 73.5 18 0.00038 31.3 7.7 72 36-117 155-228 (269)
59 cd07587 ML_beta-AS mammalian-l 71.6 20 0.00043 32.9 7.8 64 37-116 238-319 (363)
60 cd07583 nitrilase_5 Uncharacte 70.8 20 0.00044 30.6 7.4 69 32-117 151-221 (253)
61 PRK13286 amiE acylamide amidoh 70.6 29 0.00063 31.6 8.5 69 32-117 174-244 (345)
62 cd07573 CPA N-carbamoylputresc 69.5 32 0.0007 29.9 8.5 77 33-117 160-242 (284)
63 TIGR03381 agmatine_aguB N-carb 69.4 39 0.00084 29.3 9.0 74 34-117 160-239 (279)
64 PF02630 SCO1-SenC: SCO1/SenC; 69.3 36 0.00077 27.5 8.1 45 76-120 124-172 (174)
65 cd07197 nitrilase Nitrilase su 68.9 27 0.00058 29.6 7.7 67 34-117 153-221 (253)
66 cd07568 ML_beta-AS_like mammal 68.6 30 0.00064 30.2 8.1 69 33-117 171-244 (287)
67 cd07577 Ph0642_like Pyrococcus 67.8 31 0.00068 29.6 8.0 64 34-117 151-220 (259)
68 TIGR00542 hxl6Piso_put hexulos 67.2 26 0.00057 30.5 7.4 63 23-93 90-152 (279)
69 PLN02504 nitrilase 66.8 27 0.00058 31.8 7.6 63 34-116 196-280 (346)
70 PLN02747 N-carbamolyputrescine 65.4 52 0.0011 28.9 9.0 75 33-117 165-249 (296)
71 PF10087 DUF2325: Uncharacteri 65.0 35 0.00075 24.6 6.5 40 173-222 47-86 (97)
72 PRK09856 fructoselysine 3-epim 65.0 31 0.00067 29.9 7.4 64 22-93 85-148 (275)
73 cd07581 nitrilase_3 Uncharacte 64.6 35 0.00075 29.1 7.6 68 33-117 156-223 (255)
74 PRK15018 1-acyl-sn-glycerol-3- 64.2 27 0.00059 30.1 6.7 57 20-91 119-175 (245)
75 cd07582 nitrilase_4 Uncharacte 63.5 46 0.001 29.3 8.3 69 33-117 182-256 (294)
76 cd07579 nitrilase_1_R2 Second 62.5 34 0.00073 30.0 7.2 83 34-116 146-230 (279)
77 PRK13210 putative L-xylulose 5 62.4 38 0.00083 29.4 7.6 63 22-92 89-151 (284)
78 COG0388 Predicted amidohydrola 61.9 43 0.00094 29.0 7.8 65 37-117 163-230 (274)
79 PF00795 CN_hydrolase: Carbon- 59.0 23 0.00051 28.4 5.3 74 166-250 26-113 (186)
80 PF01261 AP_endonuc_2: Xylose 58.9 42 0.00091 27.2 6.9 65 23-93 67-131 (213)
81 smart00481 POLIIIAc DNA polyme 58.8 45 0.00097 21.9 5.7 46 28-94 16-61 (67)
82 cd07564 nitrilases_CHs Nitrila 58.2 49 0.0011 29.2 7.5 43 74-116 193-252 (297)
83 TIGR00530 AGP_acyltrn 1-acyl-s 58.0 40 0.00087 25.1 6.1 50 27-91 76-125 (130)
84 KOG0807 Carbon-nitrogen hydrol 57.2 19 0.00041 30.8 4.3 67 38-122 184-255 (295)
85 PLN00202 beta-ureidopropionase 56.8 55 0.0012 30.5 7.8 64 37-116 259-340 (405)
86 cd07566 ScNTA1_like Saccharomy 55.0 51 0.0011 29.2 7.0 78 167-252 25-116 (295)
87 KOG2792 Putative cytochrome C 55.0 57 0.0012 28.3 6.8 99 23-123 156-262 (280)
88 PRK10438 C-N hydrolase family 55.0 46 0.001 28.6 6.7 62 39-117 154-218 (256)
89 PF01784 NIF3: NIF3 (NGG1p int 54.3 40 0.00088 28.8 6.1 59 154-217 34-94 (241)
90 PF14488 DUF4434: Domain of un 54.0 62 0.0013 26.0 6.8 67 27-95 20-86 (166)
91 cd03012 TlpA_like_DipZ_like Tl 53.7 90 0.0019 23.3 7.4 89 10-117 24-120 (126)
92 cd01821 Rhamnogalacturan_acety 53.1 58 0.0012 26.5 6.7 74 10-91 67-150 (198)
93 PRK13209 L-xylulose 5-phosphat 52.3 66 0.0014 27.9 7.3 64 22-93 94-157 (283)
94 PF01553 Acyltransferase: Acyl 52.2 44 0.00095 24.9 5.5 25 27-51 78-102 (132)
95 PRK12677 xylose isomerase; Pro 51.8 1.1E+02 0.0023 28.4 8.8 66 23-93 110-178 (384)
96 cd00019 AP2Ec AP endonuclease 51.7 49 0.0011 28.7 6.4 63 22-93 80-142 (279)
97 cd07578 nitrilase_1_R1 First n 51.4 78 0.0017 27.1 7.5 65 34-117 156-222 (258)
98 COG0297 GlgA Glycogen synthase 50.9 76 0.0016 30.4 7.8 106 152-293 350-455 (487)
99 PRK13287 amiF formamidase; Pro 50.8 1E+02 0.0022 27.9 8.4 67 34-117 175-243 (333)
100 smart00563 PlsC Phosphate acyl 49.1 48 0.001 23.9 5.2 28 24-52 60-87 (118)
101 cd07571 ALP_N-acyl_transferase 47.7 68 0.0015 27.8 6.6 74 166-251 31-104 (270)
102 COG1941 FrhG Coenzyme F420-red 47.2 85 0.0018 26.9 6.6 89 7-100 2-91 (247)
103 PHA01633 putative glycosyl tra 46.5 50 0.0011 29.9 5.7 37 173-222 222-258 (335)
104 PF08821 CGGC: CGGC domain; I 46.3 82 0.0018 23.3 5.8 54 27-94 52-106 (107)
105 PRK13981 NAD synthetase; Provi 45.6 93 0.002 30.2 7.8 70 33-117 154-225 (540)
106 cd07569 DCase N-carbamyl-D-ami 45.5 1.1E+02 0.0024 26.9 7.7 39 79-117 219-259 (302)
107 COG1126 GlnQ ABC-type polar am 45.4 49 0.0011 28.1 4.9 78 28-120 142-219 (240)
108 COG1120 FepC ABC-type cobalami 44.7 33 0.00071 29.8 4.0 76 27-117 143-219 (258)
109 cd01832 SGNH_hydrolase_like_1 44.3 1.2E+02 0.0025 24.1 7.2 75 10-91 69-149 (185)
110 COG1225 Bcp Peroxiredoxin [Pos 42.8 35 0.00075 27.3 3.6 23 102-124 119-141 (157)
111 PRK10799 metal-binding protein 42.7 88 0.0019 26.9 6.4 57 154-216 37-95 (247)
112 COG1066 Sms Predicted ATP-depe 42.4 1.5E+02 0.0032 27.8 7.9 36 74-109 197-241 (456)
113 cd07990 LPLAT_LCLAT1-like Lyso 41.2 69 0.0015 26.1 5.4 52 23-93 85-138 (193)
114 cd07575 Xc-1258_like Xanthomon 40.6 91 0.002 26.6 6.3 73 166-250 25-102 (252)
115 PF10087 DUF2325: Uncharacteri 40.4 51 0.0011 23.7 3.9 22 72-93 60-81 (97)
116 PF09587 PGA_cap: Bacterial ca 39.7 2.1E+02 0.0045 24.4 8.3 74 27-115 171-246 (250)
117 COG4598 HisP ABC-type histidin 39.1 1.5E+02 0.0033 24.6 6.7 73 28-115 158-230 (256)
118 PRK09997 hydroxypyruvate isome 39.0 1.7E+02 0.0037 25.0 7.7 62 22-92 80-142 (258)
119 cd04501 SGNH_hydrolase_like_4 38.9 1.4E+02 0.0029 23.8 6.8 77 10-91 61-142 (183)
120 PF03851 UvdE: UV-endonuclease 38.9 1.7E+02 0.0037 25.7 7.6 66 22-92 40-105 (275)
121 TIGR03234 OH-pyruv-isom hydrox 38.7 2.4E+02 0.0053 23.9 9.1 63 23-93 80-142 (254)
122 COG4175 ProV ABC-type proline/ 38.2 60 0.0013 29.3 4.6 70 33-117 175-245 (386)
123 TIGR00629 uvde UV damage endon 37.2 1.7E+02 0.0036 26.3 7.3 66 23-93 48-113 (312)
124 COG0252 AnsB L-asparaginase/ar 36.7 2.4E+02 0.0052 25.8 8.4 64 151-222 230-294 (351)
125 PRK11629 lolD lipoprotein tran 36.1 1.5E+02 0.0033 24.8 6.9 43 74-117 183-225 (233)
126 TIGR03864 PQQ_ABC_ATP ABC tran 35.8 2.3E+02 0.005 23.8 8.0 42 74-116 170-211 (236)
127 COG3638 ABC-type phosphate/pho 35.8 51 0.0011 28.4 3.6 70 32-116 157-227 (258)
128 PF09587 PGA_cap: Bacterial ca 35.4 2.8E+02 0.0061 23.6 10.0 75 143-222 121-227 (250)
129 TIGR02211 LolD_lipo_ex lipopro 34.5 1.9E+02 0.004 24.0 7.1 42 74-116 179-220 (221)
130 TIGR00486 YbgI_SA1388 dinuclea 34.4 2E+02 0.0042 24.8 7.3 58 154-217 38-97 (249)
131 TIGR01184 ntrCD nitrate transp 34.3 1.8E+02 0.0038 24.4 7.0 69 33-116 125-194 (230)
132 COG1131 CcmA ABC-type multidru 34.0 1.2E+02 0.0026 26.8 6.1 72 33-119 147-219 (293)
133 cd01822 Lysophospholipase_L1_l 33.9 1.3E+02 0.0029 23.5 5.9 69 10-91 66-139 (177)
134 TIGR01766 tspaseT_teng_C trans 33.7 1.2E+02 0.0027 20.6 5.0 61 30-92 14-75 (82)
135 cd07945 DRE_TIM_CMS Leptospira 33.7 1.5E+02 0.0033 26.0 6.6 35 20-54 108-142 (280)
136 PRK09461 ansA cytoplasmic aspa 33.6 2.3E+02 0.005 25.6 7.9 65 151-222 210-275 (335)
137 PRK10247 putative ABC transpor 33.4 1.9E+02 0.0041 24.1 7.0 42 74-115 175-216 (225)
138 cd03256 ABC_PhnC_transporter A 33.2 1.7E+02 0.0038 24.5 6.8 42 74-116 182-224 (241)
139 cd02968 SCO SCO (an acronym fo 33.1 1.2E+02 0.0026 22.8 5.3 42 78-120 97-141 (142)
140 COG1504 Uncharacterized conser 32.9 2.1E+02 0.0045 21.4 5.9 93 92-203 9-108 (121)
141 KOG2733 Uncharacterized membra 32.5 1.7E+02 0.0036 27.0 6.5 60 155-220 66-146 (423)
142 cd03255 ABC_MJ0796_Lo1CDE_FtsE 32.4 2.1E+02 0.0046 23.5 7.1 39 74-114 178-217 (218)
143 PF14419 SPOUT_MTase_2: AF2226 32.3 90 0.002 24.9 4.3 45 10-55 1-47 (173)
144 cd03226 ABC_cobalt_CbiO_domain 32.3 1.3E+02 0.0028 24.6 5.7 40 74-115 164-204 (205)
145 cd07993 LPLAT_DHAPAT-like Lyso 32.3 1.8E+02 0.0039 23.9 6.6 26 27-52 88-113 (205)
146 PRK10584 putative ABC transpor 32.1 1.9E+02 0.0041 24.1 6.8 42 74-116 184-225 (228)
147 PRK09437 bcp thioredoxin-depen 31.7 2.4E+02 0.0052 21.7 7.6 26 22-47 46-71 (154)
148 TIGR02314 ABC_MetN D-methionin 31.5 1.6E+02 0.0036 26.7 6.6 69 33-116 151-220 (343)
149 COG1134 TagH ABC-type polysacc 31.5 1.1E+02 0.0024 26.4 5.1 64 38-116 163-226 (249)
150 PRK10528 multifunctional acyl- 31.5 2.2E+02 0.0048 23.0 6.9 69 10-91 73-146 (191)
151 cd07574 nitrilase_Rim1_like Un 31.1 2.1E+02 0.0046 24.6 7.1 63 34-112 163-231 (280)
152 cd03216 ABC_Carb_Monos_I This 31.1 1.7E+02 0.0037 23.0 6.0 71 30-116 90-161 (163)
153 cd02971 PRX_family Peroxiredox 31.0 1.6E+02 0.0035 22.0 5.7 19 102-120 109-127 (140)
154 PRK13650 cbiO cobalt transport 30.6 1.9E+02 0.004 25.2 6.7 42 74-116 178-219 (279)
155 PRK13640 cbiO cobalt transport 30.5 1.9E+02 0.0042 25.1 6.8 42 74-116 181-222 (282)
156 PF07355 GRDB: Glycine/sarcosi 30.5 2.1E+02 0.0045 26.1 6.8 65 150-220 48-120 (349)
157 cd07988 LPLAT_ABO13168-like Ly 30.1 1.4E+02 0.0031 23.7 5.4 34 40-91 95-128 (163)
158 smart00642 Aamy Alpha-amylase 30.1 2.3E+02 0.005 22.6 6.6 72 27-98 19-94 (166)
159 COG2100 Predicted Fe-S oxidore 30.0 1.1E+02 0.0025 27.6 5.0 47 23-87 238-284 (414)
160 cd07986 LPLAT_ACT14924-like Ly 29.9 1.5E+02 0.0033 24.5 5.7 58 24-91 83-140 (210)
161 COG4555 NatA ABC-type Na+ tran 29.8 1.5E+02 0.0032 25.2 5.3 69 33-117 144-213 (245)
162 cd03018 PRX_AhpE_like Peroxire 29.7 2E+02 0.0042 21.9 6.1 26 22-47 44-69 (149)
163 cd03293 ABC_NrtD_SsuB_transpor 29.7 2.2E+02 0.0048 23.5 6.8 44 74-117 169-214 (220)
164 cd03259 ABC_Carb_Solutes_like 29.7 2.5E+02 0.0054 23.0 7.0 42 74-116 168-210 (213)
165 cd03265 ABC_DrrA DrrA is the A 29.5 1.9E+02 0.0042 23.9 6.4 42 74-116 169-211 (220)
166 cd07992 LPLAT_AAK14816-like Ly 29.5 68 0.0015 26.4 3.5 25 27-51 97-121 (203)
167 cd03297 ABC_ModC_molybdenum_tr 29.1 2.1E+02 0.0044 23.6 6.4 42 74-116 169-211 (214)
168 PF11305 DUF3107: Protein of u 29.1 73 0.0016 21.9 2.9 38 7-44 1-40 (74)
169 cd03260 ABC_PstB_phosphate_tra 28.7 1.7E+02 0.0038 24.3 6.0 41 74-116 179-219 (227)
170 TIGR00960 3a0501s02 Type II (G 28.5 1.9E+02 0.0041 23.8 6.1 39 74-114 176-215 (216)
171 PRK13635 cbiO cobalt transport 28.4 2.2E+02 0.0047 24.8 6.7 42 74-116 178-219 (279)
172 PRK13633 cobalt transporter AT 28.3 2.8E+02 0.0061 24.1 7.4 42 74-116 182-223 (280)
173 cd03257 ABC_NikE_OppD_transpor 28.0 2.3E+02 0.005 23.4 6.6 42 74-116 183-225 (228)
174 smart00037 CNX Connexin homolo 27.8 26 0.00056 20.0 0.5 9 157-165 22-30 (34)
175 cd03266 ABC_NatA_sodium_export 27.8 2E+02 0.0043 23.7 6.2 68 33-116 147-215 (218)
176 PRK13648 cbiO cobalt transport 27.8 3.2E+02 0.007 23.5 7.7 42 74-116 180-221 (269)
177 cd03298 ABC_ThiQ_thiamine_tran 27.7 2.6E+02 0.0056 22.9 6.8 42 74-116 166-208 (211)
178 PRK12652 putative monovalent c 27.6 94 0.002 28.5 4.3 24 30-53 103-127 (357)
179 TIGR02982 heterocyst_DevA ABC 27.5 2.6E+02 0.0057 23.1 6.8 68 33-115 152-219 (220)
180 PRK13642 cbiO cobalt transport 27.3 2.5E+02 0.0054 24.3 6.9 42 74-116 178-219 (277)
181 COG1121 ZnuC ABC-type Mn/Zn tr 27.3 2.3E+02 0.0051 24.6 6.4 67 28-109 145-212 (254)
182 smart00870 Asparaginase Aspara 26.8 3E+02 0.0066 24.7 7.4 64 151-222 212-275 (323)
183 PRK10908 cell division protein 26.8 2E+02 0.0044 23.8 6.1 41 74-116 175-216 (222)
184 PTZ00056 glutathione peroxidas 26.7 3.6E+02 0.0079 22.2 8.9 26 22-47 54-79 (199)
185 PRK13652 cbiO cobalt transport 26.4 2.6E+02 0.0056 24.3 6.8 42 74-116 175-217 (277)
186 cd04506 SGNH_hydrolase_YpmR_li 26.4 3.1E+02 0.0066 22.1 7.0 18 74-91 149-167 (204)
187 cd03258 ABC_MetN_methionine_tr 26.4 2.7E+02 0.0059 23.2 6.8 42 74-116 178-220 (233)
188 cd03224 ABC_TM1139_LivF_branch 26.3 2.4E+02 0.0052 23.3 6.4 41 74-116 170-211 (222)
189 PRK07534 methionine synthase I 26.1 3.7E+02 0.008 24.4 7.8 55 21-96 125-179 (336)
190 KOG0806 Carbon-nitrogen hydrol 26.1 58 0.0013 28.9 2.6 29 98-126 123-151 (298)
191 cd03301 ABC_MalK_N The N-termi 26.0 2.9E+02 0.0062 22.6 6.8 42 74-116 168-210 (213)
192 PF13788 DUF4180: Domain of un 25.8 1.7E+02 0.0038 21.9 4.7 45 7-53 4-48 (113)
193 PRK11614 livF leucine/isoleuci 25.8 2.1E+02 0.0045 24.0 6.0 41 74-116 175-216 (237)
194 CHL00200 trpA tryptophan synth 25.8 1.7E+02 0.0036 25.6 5.3 30 155-184 205-234 (263)
195 PF09142 TruB_C: tRNA Pseudour 25.7 55 0.0012 21.1 1.8 35 203-254 9-43 (56)
196 cd03218 ABC_YhbG The ABC trans 25.5 2.4E+02 0.0051 23.5 6.2 41 74-116 171-212 (232)
197 PRK09536 btuD corrinoid ABC tr 25.5 1.8E+02 0.004 27.0 5.9 69 32-116 149-218 (402)
198 cd02072 Glm_B12_BD B12 binding 25.3 2.5E+02 0.0055 21.5 5.7 24 29-52 39-62 (128)
199 PRK10938 putative molybdenum t 25.2 4.1E+02 0.0088 25.2 8.4 69 33-116 412-482 (490)
200 TIGR00674 dapA dihydrodipicoli 25.1 1.4E+02 0.003 26.2 4.9 51 24-91 77-128 (285)
201 cd03267 ABC_NatA_like Similar 24.9 2.8E+02 0.006 23.3 6.6 42 74-116 191-233 (236)
202 cd03219 ABC_Mj1267_LivG_branch 24.9 2.4E+02 0.0051 23.6 6.1 41 74-116 181-222 (236)
203 TIGR02315 ABC_phnC phosphonate 24.8 3.6E+02 0.0077 22.6 7.3 42 74-116 183-225 (243)
204 PRK13632 cbiO cobalt transport 24.8 4.1E+02 0.0088 22.9 7.7 42 74-116 180-221 (271)
205 cd00984 DnaB_C DnaB helicase C 24.7 2E+02 0.0043 24.1 5.7 61 27-94 109-170 (242)
206 COG1135 AbcC ABC-type metal io 24.7 1.9E+02 0.0041 26.1 5.4 74 28-116 147-221 (339)
207 PRK13634 cbiO cobalt transport 24.5 2.6E+02 0.0057 24.5 6.5 42 74-116 183-225 (290)
208 TIGR02770 nickel_nikD nickel i 24.5 2.6E+02 0.0055 23.4 6.3 42 74-116 163-205 (230)
209 PTZ00261 acyltransferase; Prov 24.4 1E+02 0.0022 28.2 3.9 27 25-51 200-226 (355)
210 PRK10851 sulfate/thiosulfate t 24.4 2.6E+02 0.0057 25.4 6.6 71 32-117 146-217 (353)
211 TIGR03005 ectoine_ehuA ectoine 24.3 3E+02 0.0064 23.4 6.7 42 74-116 184-226 (252)
212 cd03261 ABC_Org_Solvent_Resist 24.1 2.8E+02 0.0061 23.2 6.5 42 74-116 174-216 (235)
213 PRK09493 glnQ glutamine ABC tr 24.1 2.5E+02 0.0055 23.6 6.2 41 74-116 174-215 (240)
214 PF09391 DUF2000: Protein of u 24.1 93 0.002 24.1 3.1 28 25-52 62-89 (133)
215 COG1082 IolE Sugar phosphate i 24.1 3.9E+02 0.0084 22.7 7.5 66 23-93 80-145 (274)
216 PRK10619 histidine/lysine/argi 24.0 2.4E+02 0.0052 24.1 6.1 40 75-116 191-231 (257)
217 cd00950 DHDPS Dihydrodipicolin 24.0 1.4E+02 0.0031 26.0 4.7 51 25-92 80-131 (284)
218 PF13342 Toprim_Crpt: C-termin 23.8 1.6E+02 0.0035 19.3 3.8 40 76-116 18-57 (62)
219 COG0499 SAM1 S-adenosylhomocys 23.8 1.7E+02 0.0036 27.0 5.0 58 148-216 43-100 (420)
220 PRK11153 metN DL-methionine tr 23.7 2.8E+02 0.006 25.1 6.6 42 74-116 178-220 (343)
221 PF10042 DUF2278: Uncharacteri 23.7 1.1E+02 0.0024 25.6 3.7 35 20-54 115-149 (206)
222 cd02646 R3H_G-patch R3H domain 23.6 2.1E+02 0.0045 18.3 4.5 41 27-89 2-42 (58)
223 smart00518 AP2Ec AP endonuclea 23.5 3.8E+02 0.0082 22.9 7.3 25 22-46 79-103 (273)
224 PRK13637 cbiO cobalt transport 23.5 2.9E+02 0.0062 24.2 6.6 42 74-116 182-224 (287)
225 PF02126 PTE: Phosphotriestera 23.1 2.8E+02 0.0062 24.8 6.4 53 22-94 33-85 (308)
226 PLN02901 1-acyl-sn-glycerol-3- 23.1 2.9E+02 0.0063 22.9 6.3 55 23-93 106-160 (214)
227 KOG2178 Predicted sugar kinase 22.9 5.2E+02 0.011 24.1 7.9 125 23-179 105-230 (409)
228 PRK10771 thiQ thiamine transpo 22.9 3.4E+02 0.0074 22.6 6.7 68 34-116 141-209 (232)
229 cd03296 ABC_CysA_sulfate_impor 22.8 3.1E+02 0.0067 23.0 6.5 42 74-116 174-216 (239)
230 PF13472 Lipase_GDSL_2: GDSL-l 22.8 3.5E+02 0.0075 20.5 7.1 78 8-91 61-147 (179)
231 TIGR02631 xylA_Arthro xylose i 22.7 3.7E+02 0.0081 24.8 7.3 65 23-92 111-178 (382)
232 PRK13651 cobalt transporter AT 22.7 2.3E+02 0.0051 25.1 5.9 41 74-116 203-244 (305)
233 PRK11701 phnK phosphonate C-P 22.7 3.3E+02 0.0071 23.2 6.7 41 75-116 190-231 (258)
234 PLN02399 phospholipid hydroper 22.7 4E+02 0.0087 22.8 7.0 26 22-47 114-139 (236)
235 TIGR02323 CP_lyasePhnK phospho 22.6 3.4E+02 0.0074 23.0 6.8 42 74-116 186-228 (253)
236 PRK09989 hypothetical protein; 22.5 3.7E+02 0.0079 22.9 7.0 62 22-92 80-142 (258)
237 PRK13636 cbiO cobalt transport 22.5 3.1E+02 0.0068 23.8 6.6 42 74-116 179-221 (283)
238 cd03215 ABC_Carb_Monos_II This 22.5 2.8E+02 0.0061 22.1 5.9 79 20-114 93-181 (182)
239 PRK13536 nodulation factor exp 22.5 2.3E+02 0.005 25.6 5.9 69 33-117 183-252 (340)
240 cd03214 ABC_Iron-Siderophores_ 22.4 3.4E+02 0.0074 21.6 6.4 70 32-116 107-177 (180)
241 TIGR01019 sucCoAalpha succinyl 22.4 2E+02 0.0044 25.4 5.3 52 163-224 76-127 (286)
242 PF05221 AdoHcyase: S-adenosyl 22.4 1.5E+02 0.0033 25.9 4.4 56 149-216 42-97 (268)
243 PLN02274 inosine-5'-monophosph 22.3 4.2E+02 0.009 25.6 7.8 60 151-218 237-296 (505)
244 cd03295 ABC_OpuCA_Osmoprotecti 22.3 3.1E+02 0.0067 23.1 6.4 42 74-116 173-215 (242)
245 PRK11231 fecE iron-dicitrate t 22.3 2.9E+02 0.0062 23.5 6.2 68 33-116 149-217 (255)
246 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 21.9 2.7E+02 0.0059 23.2 5.9 68 33-116 153-221 (224)
247 TIGR03884 sel_bind_Methan sele 21.9 1.3E+02 0.0027 20.7 3.0 24 20-46 25-48 (74)
248 cd03213 ABCG_EPDR ABCG transpo 21.9 3.5E+02 0.0075 21.9 6.4 69 32-116 121-191 (194)
249 cd03268 ABC_BcrA_bacitracin_re 21.9 2.8E+02 0.0061 22.6 5.9 41 74-116 164-205 (208)
250 cd00952 CHBPH_aldolase Trans-o 21.7 1.9E+02 0.0041 25.8 5.1 51 25-92 88-140 (309)
251 PF08140 Cuticle_1: Crustacean 21.6 1.1E+02 0.0023 18.4 2.2 14 238-251 1-14 (40)
252 PRK13649 cbiO cobalt transport 21.5 2.7E+02 0.0059 24.1 6.0 41 74-116 183-224 (280)
253 PRK10418 nikD nickel transport 21.3 3.6E+02 0.0077 22.9 6.6 42 74-116 178-220 (254)
254 PRK11264 putative amino-acid A 21.3 3E+02 0.0065 23.2 6.2 40 75-116 183-223 (250)
255 PRK09984 phosphonate/organopho 21.2 3.9E+02 0.0084 22.8 6.9 42 74-116 190-232 (262)
256 TIGR01187 potA spermidine/putr 21.2 3.3E+02 0.0072 24.3 6.6 43 74-117 138-181 (325)
257 cd03217 ABC_FeS_Assembly ABC-t 21.1 3.5E+02 0.0077 22.0 6.3 69 32-116 114-184 (200)
258 cd01125 repA Hexameric Replica 21.0 4E+02 0.0086 22.4 6.8 58 28-94 99-156 (239)
259 cd03264 ABC_drug_resistance_li 21.0 2.4E+02 0.0053 23.1 5.4 40 75-116 169-208 (211)
260 PRK10116 universal stress prot 21.0 3.2E+02 0.0069 20.4 5.7 50 164-221 92-141 (142)
261 PRK10253 iron-enterobactin tra 20.9 3.6E+02 0.0078 23.1 6.6 69 33-116 154-223 (265)
262 PRK11432 fbpC ferric transport 20.9 3.2E+02 0.007 24.8 6.5 70 33-117 147-217 (351)
263 PF13380 CoA_binding_2: CoA bi 20.8 3E+02 0.0065 20.4 5.3 45 25-93 64-108 (116)
264 PRK10419 nikE nickel transport 20.8 3.6E+02 0.0078 23.2 6.6 42 74-116 189-231 (268)
265 PRK13647 cbiO cobalt transport 20.8 2.8E+02 0.0062 24.0 5.9 68 33-116 149-217 (274)
266 COG1119 ModF ABC-type molybden 20.7 5.7E+02 0.012 22.2 7.8 76 28-119 177-255 (257)
267 PRK09485 mmuM homocysteine met 20.7 5.1E+02 0.011 23.0 7.6 29 21-49 134-162 (304)
268 cd03017 PRX_BCP Peroxiredoxin 20.7 3.6E+02 0.0079 20.0 7.3 15 105-119 112-126 (140)
269 PRK11756 exonuclease III; Prov 20.6 1.8E+02 0.0039 25.0 4.6 36 9-50 1-36 (268)
270 cd01834 SGNH_hydrolase_like_2 20.6 4.2E+02 0.0091 20.7 7.0 77 10-91 63-151 (191)
271 TIGR03569 NeuB_NnaB N-acetylne 20.6 4E+02 0.0086 24.1 6.8 72 22-95 11-97 (329)
272 PF00809 Pterin_bind: Pterin b 20.5 94 0.002 26.0 2.7 55 154-221 72-126 (210)
273 PLN02591 tryptophan synthase 20.4 2.8E+02 0.0061 23.9 5.7 32 153-184 190-221 (250)
274 PF02449 Glyco_hydro_42: Beta- 20.4 1.2E+02 0.0026 27.8 3.6 56 27-95 10-68 (374)
275 TIGR01917 gly_red_sel_B glycin 20.4 3.7E+02 0.0081 25.2 6.7 66 150-221 44-117 (431)
276 TIGR01918 various_sel_PB selen 20.3 3.8E+02 0.0082 25.2 6.7 66 150-221 44-117 (431)
277 cd03299 ABC_ModC_like Archeal 20.3 4.1E+02 0.0089 22.2 6.7 42 74-116 167-209 (235)
278 TIGR01288 nodI ATP-binding ABC 20.2 2.8E+02 0.0061 24.4 5.9 41 74-116 173-214 (303)
279 cd01424 MGS_CPS_II Methylglyox 20.2 1.5E+02 0.0033 21.5 3.6 47 162-217 55-101 (110)
280 PF12681 Glyoxalase_2: Glyoxal 20.2 3.1E+02 0.0067 19.0 5.8 41 75-117 66-106 (108)
281 TIGR03873 F420-0_ABC_ATP propo 20.1 3.6E+02 0.0078 22.9 6.4 41 74-116 175-216 (256)
282 TIGR01978 sufC FeS assembly AT 20.1 3.9E+02 0.0086 22.3 6.6 41 74-116 182-224 (243)
283 cd07941 DRE_TIM_LeuA3 Desulfob 20.1 3.5E+02 0.0076 23.5 6.4 31 20-50 112-142 (273)
284 PRK13546 teichoic acids export 20.1 2.9E+02 0.0062 23.9 5.8 68 33-116 154-222 (264)
285 PRK14014 putative acyltransfer 20.0 1.3E+02 0.0028 26.8 3.6 25 26-50 160-184 (301)
No 1
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=3.3e-56 Score=392.99 Aligned_cols=278 Identities=69% Similarity=1.181 Sum_probs=246.1
Q ss_pred eEEEEEecccCCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCc
Q 022174 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (301)
Q Consensus 9 ~kia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (301)
||||++|+++.+++++|++++.+++++|+++|+|||||||++++||...+....+.+.+++...+++++.|+++|+++++
T Consensus 1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 80 (279)
T TIGR03381 1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGV 80 (279)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCc
Confidence 69999999988999999999999999999999999999999999997655433455555554445789999999999999
Q ss_pred EEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHHHH
Q 022174 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (301)
Q Consensus 89 ~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~~~ 168 (301)
+|++|++++.++++||++++|+++|+++..|+|+||+..+.+.|..+|++|+..+.+|+++++|+|++||||++||++++
T Consensus 81 ~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~D~~fpe~~r 160 (279)
T TIGR03381 81 VIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQWFPETAR 160 (279)
T ss_pred EEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEEEcCCcChHHHH
Confidence 99999998888899999999999999999999999987666678889999985578999999999999999999999999
Q ss_pred HHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCCCc
Q 022174 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGE 248 (301)
Q Consensus 169 ~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~ 248 (301)
.++++|||+|++|++|+..+++.+.....+|..+.++||+||++|++.||++|.... +..+..|.|.|+|++|+|+
T Consensus 161 ~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~----~~~~~~~~G~S~i~~p~G~ 236 (279)
T TIGR03381 161 AMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVG----DGGEQTFYGSSFIADHTGE 236 (279)
T ss_pred HHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccCC----CCCcceEeeeEEEECCCCc
Confidence 999999999999999876555444455679999999999999999999999996521 0124788999999999999
Q ss_pred cccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHHH
Q 022174 249 IVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKV 290 (301)
Q Consensus 249 ~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~ 290 (301)
++++++.++++++++++|++.++..|..++++.++||++|..
T Consensus 237 il~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~r~~~y~~ 278 (279)
T TIGR03381 237 LVAEAGRSEEAVLVATFDLDEIAKQRAAWGFFRDRRPELYGP 278 (279)
T ss_pred EeecCCCCCCceEEEEeCHHHHHHHHhcCchhhhCChhhccC
Confidence 999998888999999999999999999999999999999963
No 2
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=1.1e-55 Score=392.49 Aligned_cols=294 Identities=87% Similarity=1.395 Sum_probs=257.7
Q ss_pred CCCcceEEEEEecccCCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHH
Q 022174 4 GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (301)
Q Consensus 4 ~~~~~~kia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (301)
.|..+||||++|+++.+|++.|++++.+++++|.++|+|||||||++++||.......++.+.+....+++.++.|+++|
T Consensus 2 ~~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 81 (296)
T PLN02747 2 GMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLA 81 (296)
T ss_pred CCCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHH
Confidence 46678999999999888999999999999999999999999999999999976543344555555444457889999999
Q ss_pred HHhCcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCc
Q 022174 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWF 163 (301)
Q Consensus 84 ~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~ 163 (301)
++++++|++|.+++.++++||++++++++|+++++|+|+||+..+.+.|..+|.+|+..+++|+++++|+|++||||.+|
T Consensus 82 ~~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~~~~~~~~~rig~~IC~D~~f 161 (296)
T PLN02747 82 KELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVAICWDQWF 161 (296)
T ss_pred HHcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCCeeEEcCCccEEEEEEccccc
Confidence 99999999999888888999999999999999999999999876666788889999755789999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEE
Q 022174 164 PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIA 243 (301)
Q Consensus 164 pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~ 243 (301)
|++++.++++|||+|++|++|+..+++.+..+..+|..+.++||+||++||+.+|++|......+.|.....|.|.|.|+
T Consensus 162 pe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~~~G~S~i~ 241 (296)
T PLN02747 162 PEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKITFYGGSFIA 241 (296)
T ss_pred hHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCceEeeeeEEE
Confidence 99999999999999999999876665555556689999999999999999999999996421111233357899999999
Q ss_pred CCCCccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHHHHHhhcCC
Q 022174 244 GPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLDGS 297 (301)
Q Consensus 244 ~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~~~~~~~~ 297 (301)
+|+|+++++++.++++++++++|++.++..|..+++++++|+++|..++++|+.
T Consensus 242 ~p~G~vl~~~~~~~e~~~~adid~~~~~~~r~~~~~~~~~r~~~~~~~~~~~~~ 295 (296)
T PLN02747 242 GPTGEIVAEADDKAEAVLVAEFDLDQIKSKRASWGVFRDRRPDLYKVLLTLDGN 295 (296)
T ss_pred CCCCCEeecCCCCCCcEEEEEEcHHHHHHHHHhCCchhhcChhHHHHHHhhccC
Confidence 999999999988789999999999999999999999999999999999998864
No 3
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=2.6e-54 Score=390.61 Aligned_cols=282 Identities=30% Similarity=0.463 Sum_probs=240.1
Q ss_pred CcceEEEEEeccc-C-------CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccch-HHHhhcCCCCCChhH
Q 022174 6 RREVVVSALQFAC-T-------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRE-DFFQRAKPYKDHPTI 76 (301)
Q Consensus 6 ~~~~kia~~Q~~~-~-------~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~-~~~~~~~~~~~~~~~ 76 (301)
++.||||++|+++ . ++.+.|++++.+++++|+++|+|||||||++++||....... .+.+.+++...++++
T Consensus 61 ~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~ 140 (363)
T cd07587 61 PRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTT 140 (363)
T ss_pred CceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHH
Confidence 3579999999986 2 589999999999999999999999999999999985422111 233444444345889
Q ss_pred HHHHHHHHHhCcEEeeeeeecC---CCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceE
Q 022174 77 LKMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKI 153 (301)
Q Consensus 77 ~~l~~~a~~~~i~iv~G~~~~~---~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~i 153 (301)
+.|+++|++++++|++|+.+++ ++++||++++|+++|+++++|+|.||+..+.+.|..+|.+|+..+++|+++++||
T Consensus 141 ~~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~gri 220 (363)
T cd07587 141 KFCQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGKI 220 (363)
T ss_pred HHHHHHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCceE
Confidence 9999999999999999988875 3689999999999999999999999998777889999999985578999999999
Q ss_pred EEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCcccccc-cc---cc
Q 022174 154 GVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEII-ET---EH 229 (301)
Q Consensus 154 g~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~-~~---~~ 229 (301)
|++||||.+||++++.++++|||+|++|++|+. .....+|..++++||+||++||+.||++|.+.. +. .+
T Consensus 221 G~~ICyD~~fPe~~r~la~~GAdiil~Psa~~~------~~~~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~ 294 (363)
T cd07587 221 AVNICYGRHHPLNWLMYGLNGAEIVFNPSATVG------ALSEPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGD 294 (363)
T ss_pred EEEEecccCCcHHHHHHHHcCCcEEEECCCcCC------CCchHHHHHHHHHHHHhcCcEEEEecccccccccccccccc
Confidence 999999999999999999999999999999753 123468999999999999999999999996531 00 00
Q ss_pred C----CcceeeecceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHHHHHh
Q 022174 230 G----KSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 293 (301)
Q Consensus 230 g----~~~~~~~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~~~~ 293 (301)
| .+...|+|.|+|++|+|+++.+++..++++++++||++.++..|..++++.++|+++|...+.
T Consensus 295 g~~~~~~~~~f~G~S~Ii~P~G~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~~~r~~~y~~~~~ 362 (363)
T cd07587 295 GKPAHKDFGHFYGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRMTARYEMYADFLA 362 (363)
T ss_pred ccccccccccccceeEEECCCCCCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCccCCHHHHHHHhc
Confidence 1 112468999999999999999887678999999999999999999999999999999987764
No 4
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.2e-53 Score=378.12 Aligned_cols=276 Identities=40% Similarity=0.676 Sum_probs=241.0
Q ss_pred cceEEEEEecccC--------CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHH
Q 022174 7 REVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (301)
Q Consensus 7 ~~~kia~~Q~~~~--------~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (301)
.+||||++|+++. ++.++|++++.+++++|+++|+|||||||++++||...+....+.+.++....+++++.
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKR 81 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHH
Confidence 4699999999964 78999999999999999999999999999999998754433334445554434578999
Q ss_pred HHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEE
Q 022174 79 MQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAI 157 (301)
Q Consensus 79 l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~I 157 (301)
|+++|++++++|++|+.++. ++++||++++|+++|++++.|+|+||++++++.|..+|.+|+....+|+++++|+|++|
T Consensus 82 l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~~~f~~~~~~iG~~I 161 (287)
T cd07568 82 FAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPVFDTAFGKIGVYI 161 (287)
T ss_pred HHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCCceEEcCCceEEEEE
Confidence 99999999999999988765 47899999999999999999999999998888899999999854789999999999999
Q ss_pred eccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeee
Q 022174 158 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFY 237 (301)
Q Consensus 158 C~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~ 237 (301)
|||.+||++++.++++|||+|++|++++.. .....|..+.++||+||++|++.+|++|... +.+...|.
T Consensus 162 CyD~~fpe~~r~la~~Ga~li~~ps~~~~~------~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~-----~~~~~~~~ 230 (287)
T cd07568 162 CYDRHFPEGWRALGLNGAEIVFNPSATVAG------LSEYLWKLEQPAAAVANGYFVGAINRVGTEA-----PWNIGEFY 230 (287)
T ss_pred EecccCchHHHHHHHCCCeEEEECCcCCCC------CchhhhHHHHHHHHHHCCcEEEEeccccccC-----CCccceEe
Confidence 999999999999999999999999996531 1345788888999999999999999999653 21235789
Q ss_pred cceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHHHHHh
Q 022174 238 GNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 293 (301)
Q Consensus 238 G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~~~~ 293 (301)
|.|+|++|+|+++++++.++++++++++|++.++.+|..++++.++|+++|..++.
T Consensus 231 G~S~ii~p~G~il~~~~~~~~~~l~a~id~~~~~~~R~~~~~~~~~r~~~y~~~~~ 286 (287)
T cd07568 231 GSSYFVDPRGQFVASASRDKDELLVAELDLDLIREVRDTWQFYRDRRPETYGELTK 286 (287)
T ss_pred ceeEEECCCceEEEecCCCCCeEEEEEecHHHHHHHHhhCchhhhcCHHHhHHhhc
Confidence 99999999999999998888999999999999999999999999999999987653
No 5
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=8.8e-53 Score=384.38 Aligned_cols=282 Identities=27% Similarity=0.440 Sum_probs=241.2
Q ss_pred CcceEEEEEecccC--------CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHH
Q 022174 6 RREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL 77 (301)
Q Consensus 6 ~~~~kia~~Q~~~~--------~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 77 (301)
..+||||++|+++. .+.++|++++.+++++|+++|+|||||||++++||........+.+.+++.+ ++..+
T Consensus 84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~-g~~~~ 162 (405)
T PLN00202 84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVD-GESTK 162 (405)
T ss_pred CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCC-CHHHH
Confidence 56899999999972 5899999999999999999999999999999999853211112344444444 47899
Q ss_pred HHHHHHHHhCcEEeeeeeecC---CCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEE
Q 022174 78 KMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIG 154 (301)
Q Consensus 78 ~l~~~a~~~~i~iv~G~~~~~---~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig 154 (301)
.|+++|++++++|++|+.++. ++++||++++|+++|+++++|+|.||+++++|.|..+|.+|+...++|+++++|||
T Consensus 163 ~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~~vf~t~~gkiG 242 (405)
T PLN00202 163 FLQELARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIA 242 (405)
T ss_pred HHHHHHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCceEEEeCCCeEE
Confidence 999999999999999988754 35799999999999999999999999998888899999999865679999999999
Q ss_pred EEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCcccccccc----ccC
Q 022174 155 VAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIET----EHG 230 (301)
Q Consensus 155 ~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~----~~g 230 (301)
++||||++|||.+|.++.+|||+|++|++|+. .....+|..++++||+||++||+.||++|.+.... .+|
T Consensus 243 v~ICYD~~FPE~~r~la~~GAdiIl~Psa~~~------~~~~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g 316 (405)
T PLN00202 243 VNICYGRHHPLNWLAFGLNGAEIVFNPSATVG------DLSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDG 316 (405)
T ss_pred EEEccccccHHHHHHHHHCCCcEEEECCCCCC------ccCHHHHHHHHHHHHHhcCCEEEEeccccccccccccccccc
Confidence 99999999999999999999999999999743 12347899999999999999999999999743100 011
Q ss_pred ----CcceeeecceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHHHHHhh
Q 022174 231 ----KSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTL 294 (301)
Q Consensus 231 ----~~~~~~~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~~~~~ 294 (301)
.+...|+|.|.|++|+|+++++++..++++++++||++.++.+|..++++.++|+++|...+..
T Consensus 317 ~~~~~~~~~f~G~S~Iv~P~G~vla~~~~~~E~llvadIDl~~v~~~R~~~~~~~~rR~~ly~~~~~~ 384 (405)
T PLN00202 317 KPQHKDFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMTARYEMYADFFAE 384 (405)
T ss_pred cccccccccccceeEEEcCCCCEeccCCCCCCcEEEEEeCHHHHHHHHHhCCcccccCHhHHHHHHHh
Confidence 1125789999999999999999876779999999999999999999999999999999988873
No 6
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=1.9e-52 Score=369.89 Aligned_cols=280 Identities=62% Similarity=1.037 Sum_probs=243.7
Q ss_pred eEEEEEecccCCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCc
Q 022174 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (301)
Q Consensus 9 ~kia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (301)
||||++|+++.++++.|++++.+.+++|.++|+|||||||++++||...+...++.+.+.+....++++.|+++|+++++
T Consensus 1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i 80 (284)
T cd07573 1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGV 80 (284)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCE
Confidence 69999999998999999999999999999999999999999999998765444444555422334788999999999999
Q ss_pred EEeeeeeecC-CCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHHH
Q 022174 89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 167 (301)
Q Consensus 89 ~iv~G~~~~~-~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~~ 167 (301)
+|++|+.++. ++++||++++++++|+++.+|+|.||+..+.+.|..+|.+|+..+.+|+++++|+|++||||++||+++
T Consensus 81 ~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~fpe~~ 160 (284)
T cd07573 81 VIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWDQWFPEAA 160 (284)
T ss_pred EEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCCceEecCCceEEEEEeccccchHHH
Confidence 9999998775 458999999999999999999999998766677888999998448899999999999999999999999
Q ss_pred HHHHHCCCcEEEeecccCCCCCCCC--CCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECC
Q 022174 168 RAMVLQGAEILFYPTAIGSEPQDDG--LDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 245 (301)
Q Consensus 168 ~~~~~~gadlil~p~~~~~~~~~~~--~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p 245 (301)
+.++++|||++++|++|+..+.... .....+|..++++||+||++|+++||++|..... .....|.|.|+|++|
T Consensus 161 r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~----~~~~~~~G~S~i~~p 236 (284)
T cd07573 161 RLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDP----GSGITFYGSSFIADP 236 (284)
T ss_pred HHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccCCC----CCCceeeceeEEECC
Confidence 9999999999999999765322211 2346789999999999999999999999965321 114789999999999
Q ss_pred CCccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHHHHH
Q 022174 246 TGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLL 292 (301)
Q Consensus 246 ~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~~~ 292 (301)
+|+++++++.++++++++++|++.++.+|+.++++.|+|+++|..++
T Consensus 237 ~G~i~~~~~~~~~~v~~a~id~~~~~~~r~~~~~~~~~~~~~~~~~~ 283 (284)
T cd07573 237 FGEILAQASRDEEEILVAEFDLDEIEEVRRAWPFFRDRRPDLYGALT 283 (284)
T ss_pred CCCeeeccCCCCCcEEEEEecHHHHHHHHhhChhhhhcChhhhhhhh
Confidence 99999999988899999999999999999999999999999998764
No 7
>PLN02504 nitrilase
Probab=100.00 E-value=1e-51 Score=372.13 Aligned_cols=277 Identities=24% Similarity=0.393 Sum_probs=234.1
Q ss_pred cceEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCcc-c-----------h---HHHhhcCCC
Q 022174 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-R-----------E---DFFQRAKPY 70 (301)
Q Consensus 7 ~~~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~-~-----------~---~~~~~~~~~ 70 (301)
.+||||++|+++ ..|.+.|++++.++|++|.++|+|||||||++++||..... . . .+...+...
T Consensus 23 ~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 102 (346)
T PLN02504 23 STVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAIDV 102 (346)
T ss_pred CceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhcccC
Confidence 469999999998 78999999999999999999999999999999999964211 0 1 122233333
Q ss_pred CCChhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCC-CceeEEeC
Q 022174 71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTK 149 (301)
Q Consensus 71 ~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~ 149 (301)
+ ++.++.|+++|++++++|++|..++.++++||++++|+++|+++.+|+|.|+.+ .|..+|.+|.. .+.+|+++
T Consensus 103 ~-g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~----~E~~~f~~G~g~~~~vf~~~ 177 (346)
T PLN02504 103 P-GPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA----LERLIWGFGDGSTIPVYDTP 177 (346)
T ss_pred C-CHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCCc----ccceeeecCCCCCCceEEcC
Confidence 3 478999999999999999999988888899999999999999999999998754 48888998862 47899999
Q ss_pred CceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCcccccc----
Q 022174 150 FAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEII---- 225 (301)
Q Consensus 150 ~~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~---- 225 (301)
++|||++||||.+||+++|.++++|||++++|++|. .++|..++++||+||++||+.||++|....
T Consensus 178 ~griG~lICyD~~fPe~~r~la~~Gadii~~p~~~~----------~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~ 247 (346)
T PLN02504 178 IGKIGAVICWENRMPLLRTAMYAKGIEIYCAPTADS----------RETWQASMRHIALEGGCFVLSANQFCRRKDYPPP 247 (346)
T ss_pred CceEEEEEeccchhHHHHHHHHHCCCeEEEECCCCC----------chhHHHHHHHHHHccCcEEEEecccccccccCcc
Confidence 999999999999999999999999999999999842 468999999999999999999999973210
Q ss_pred --------ccccCCcceeeecceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhccCccccc-ChhhHHHHHhhcC
Q 022174 226 --------ETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDR-RPELYKVLLTLDG 296 (301)
Q Consensus 226 --------~~~~g~~~~~~~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~-~~~~y~~~~~~~~ 296 (301)
+...+.+.+.|.|.|+|++|+|+++++....++++++++||++.++..|..++++.|. ||++|++.+++.+
T Consensus 248 ~~~~~~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~~e~il~adiDl~~i~~~R~~~~~~~~~~r~d~~~l~~~~~~ 327 (346)
T PLN02504 248 PEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEGEGLITADLDLGEIARAKFDFDVVGHYSRPDVLSLTVNEHP 327 (346)
T ss_pred cccccccccccccccccccCcceEEECCCCCEecCCCCCCCcEEEEEEcHHHHHHHHhhCCccccCCCCcceEEEEcCCC
Confidence 0001123478899999999999999888766799999999999999999999999886 9999999888655
Q ss_pred CC
Q 022174 297 SN 298 (301)
Q Consensus 297 ~~ 298 (301)
..
T Consensus 328 ~~ 329 (346)
T PLN02504 328 LK 329 (346)
T ss_pred CC
Confidence 43
No 8
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=1.2e-51 Score=366.42 Aligned_cols=276 Identities=27% Similarity=0.405 Sum_probs=231.8
Q ss_pred eEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCcc-------chH---HHhhcCCCCCChhHH
Q 022174 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-------RED---FFQRAKPYKDHPTIL 77 (301)
Q Consensus 9 ~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~-------~~~---~~~~~~~~~~~~~~~ 77 (301)
||||++|+++ .+|+++|++++.+++++|+++|+|||||||++++||...+. ... +.+..... .+.+++
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEV-DGPELE 79 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCC-CCHHHH
Confidence 7999999997 78999999999999999999999999999999999975321 111 22223333 247899
Q ss_pred HHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCC-CceeEEeCCceEEEE
Q 022174 78 KMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTKFAKIGVA 156 (301)
Q Consensus 78 ~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~~ig~~ 156 (301)
.|+++|++++++|++|++++.++++||++++|+++|+++++|+|.|+.. .|..+|.+|+. .+++|+++++|||++
T Consensus 80 ~l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~----~E~~~~~~g~~~~~~v~~~~~~kig~~ 155 (297)
T cd07564 80 RLAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPTH----AERLVWGQGDGSGLRVVDTPIGRLGAL 155 (297)
T ss_pred HHHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCCc----hhhhhcccCCCCCceEEecCCceEEEE
Confidence 9999999999999999988777899999999999999999999999754 58788998863 368999999999999
Q ss_pred EeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCcccccccc----c---c
Q 022174 157 ICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIET----E---H 229 (301)
Q Consensus 157 IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~----~---~ 229 (301)
||||++|||+++.++++|||++++|++.... ......+|..+.++||+||++||+.||++|...... + .
T Consensus 156 ICyD~~fPe~~r~~a~~ga~ii~~~~~~~~~----~~~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~~ 231 (297)
T cd07564 156 ICWENYMPLARYALYAQGEQIHVAPWPDFSP----YYLSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEEA 231 (297)
T ss_pred EEhhcCCHHHHHHHHHCCCeEEEECCCCccc----ccccHHHHHHHHHHHHHhcCCEEEEcccccChhHccccccccccc
Confidence 9999999999999999999999997763211 123468999999999999999999999999642100 0 0
Q ss_pred CCcceeeecceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhccCcccc-cChhhHHHHHh
Q 022174 230 GKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD-RRPELYKVLLT 293 (301)
Q Consensus 230 g~~~~~~~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~-~~~~~y~~~~~ 293 (301)
+.+...+.|.|+|++|+|+++++++.++++++++++|++.++.+|..+++++| +||++|.+.++
T Consensus 232 ~~~~~~~~G~S~iv~P~G~il~~~~~~~e~~l~a~id~~~~~~~r~~~~~~~~~~r~~~~~~~~~ 296 (297)
T cd07564 232 DPLEVLGGGGSAIVGPDGEVLAGPLPDEEGILYADIDLDDIVEAKLDFDPVGHYSRPDVFSLTVD 296 (297)
T ss_pred ccccccCCCceEEECCCCCeecCCCCCCceEEEEEecHHHHHHHHhcCCCCCCCCCchhhceeeC
Confidence 11236789999999999999999987789999999999999999999999999 69999977654
No 9
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=9.7e-51 Score=353.19 Aligned_cols=252 Identities=20% Similarity=0.335 Sum_probs=214.5
Q ss_pred ceEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHh
Q 022174 8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (301)
Q Consensus 8 ~~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (301)
+||||++|++. .+|++.|++++.+++++| +|+|||||||++++||...+.. .....++..+.|+++|+++
T Consensus 3 ~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~~-------~~~~~~~~~~~l~~~A~~~ 73 (256)
T PRK10438 3 GLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAAA-------SSLPQDDVVAWMTAKAQQT 73 (256)
T ss_pred CCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccchh-------hccccchHHHHHHHHHHHc
Confidence 49999999998 689999999999999975 6999999999999999653311 1112346789999999999
Q ss_pred CcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHH
Q 022174 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEA 166 (301)
Q Consensus 87 ~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~ 166 (301)
++.|+++..++.++++||++++|+++|. +..|+|.||++. +.|..+|.||+. +.+|+++++|+|++||||++|||+
T Consensus 74 ~~~i~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~iG~~ICyD~~fPe~ 149 (256)
T PRK10438 74 NALIAGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM--ADEHLHYKAGNA-RVIVEWRGWRILPLVCYDLRFPVW 149 (256)
T ss_pred CeEEEEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC--CCccceecCCCC-ceEEEECCEEEEEEEEeecCCHHH
Confidence 9865544445556779999999999997 569999999654 358889999985 899999999999999999999999
Q ss_pred HHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCC
Q 022174 167 ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPT 246 (301)
Q Consensus 167 ~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~ 246 (301)
+|.+ +|+|++++|++|+. ....+|..+.++||+||++||++||++|... +...|.|.|+|++|+
T Consensus 150 ~r~l--~gad~i~~~s~~~~-------~~~~~~~~~~~aRA~En~~~vv~~n~~G~~~-------~~~~~~G~S~ivdP~ 213 (256)
T PRK10438 150 SRNR--NDYDLALYVANWPA-------PRSLHWQTLLTARAIENQAYVAGCNRVGSDG-------NGHHYRGDSRIINPQ 213 (256)
T ss_pred HHhh--cCCCEEEEecCCCC-------CchHHHHHHHHHHHHhcCcEEEEecccccCC-------CCCEEcCceEEECCC
Confidence 9986 79999999999753 2346799999999999999999999999642 136899999999999
Q ss_pred CccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhH
Q 022174 247 GEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELY 288 (301)
Q Consensus 247 G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y 288 (301)
|+++++++.++++++++++|++.++..|..+++++|+++..|
T Consensus 214 G~vl~~~~~~~e~~i~~~idl~~~~~~R~~~~~l~~r~~~~~ 255 (256)
T PRK10438 214 GEIIATAEPHQATRIDAELSLEALQEYREKFPAWRDADEFTL 255 (256)
T ss_pred CcEEEEcCCCCcEEEEEEECHHHHHHHHHhCCccccCChhhc
Confidence 999999988889999999999999999999999998865543
No 10
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=2.9e-50 Score=358.57 Aligned_cols=277 Identities=30% Similarity=0.426 Sum_probs=229.8
Q ss_pred ceEEEEEeccc-CC--CHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccc---hHHHhhcCCCCCChhHHHHHH
Q 022174 8 EVVVSALQFAC-TD--DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR---EDFFQRAKPYKDHPTILKMQE 81 (301)
Q Consensus 8 ~~kia~~Q~~~-~~--~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~---~~~~~~~~~~~~~~~~~~l~~ 81 (301)
+||||++|++. .+ +.++|++++.+++++|+++|+|||||||++++||...... .+.....+....++.++.|++
T Consensus 3 ~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (302)
T cd07569 3 QVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLFD 82 (302)
T ss_pred eEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHHH
Confidence 69999999987 44 8899999999999999999999999999999998643211 111111111122467889999
Q ss_pred HHHHhCcEEeeeeeecC-CC---eeeEEEEEEcCCCCeecccccccCCCCCCC--------CcceeecCCCCCceeEEeC
Q 022174 82 LAKELGVVMPVSFFEEA-NN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGY--------QEKFYFNPGDTGFKVFQTK 149 (301)
Q Consensus 82 ~a~~~~i~iv~G~~~~~-~~---~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~--------~e~~~~~~G~~~~~~~~~~ 149 (301)
+|++++++|++|++++. ++ ++||++++|+++|+++++|+|+||+++++| .|..+|.+|+..+.+|+++
T Consensus 83 ~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v~~~~ 162 (302)
T cd07569 83 RAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVFRVP 162 (302)
T ss_pred HHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCceEecC
Confidence 99999999999998753 34 899999999999999999999999887654 3677899998347899999
Q ss_pred CceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCC---CCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccc
Q 022174 150 FAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEP---QDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIE 226 (301)
Q Consensus 150 ~~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~---~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~ 226 (301)
++|||++||||.+||++++.++.+|||+|++|+++.... +........+|....++||+||++||+.+|++|...
T Consensus 163 ~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~~-- 240 (302)
T cd07569 163 GGIMGMCICNDRRWPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAKAGMED-- 240 (302)
T ss_pred CceEEEEEeeccccchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEeeccccCC--
Confidence 999999999999999999999999999999988753321 111111245777788999999999999999999653
Q ss_pred cccCCcceeeecceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhc-cCcccccChhhHHHHH
Q 022174 227 TEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSS-WGVFRDRRPELYKVLL 292 (301)
Q Consensus 227 ~~~g~~~~~~~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~-~~~~~~~~~~~y~~~~ 292 (301)
+..+.|.|.|++|+|+++++++.++++++++++|++.++..|.. .+++.|+|+++|..++
T Consensus 241 ------~~~~~G~S~ii~p~G~vla~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~r~~~y~~~~ 301 (302)
T cd07569 241 ------GCDLIGGSCIVAPTGEIVAQATTLEDEVIVADCDLDLCREGRETVFNFARHRRPEHYGLIA 301 (302)
T ss_pred ------CceEecceEEECCCCCEEEecCCCCCcEEEEEecHHHhhhcccccCcchhhcCHHHHhhhh
Confidence 36889999999999999999988789999999999999999984 8999999999998664
No 11
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=3.5e-50 Score=349.89 Aligned_cols=253 Identities=34% Similarity=0.515 Sum_probs=223.5
Q ss_pred EEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCc
Q 022174 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (301)
Q Consensus 10 kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (301)
|||++|+++ .+++++|++++.+++++|+++|+|||||||++++||...+... +..... ..++++.|+++|+++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~---~~~~~~-~~~~~~~l~~~a~~~~~ 76 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVA---RLAEPA-DGPALQALRAIARRHGI 76 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhh---hhhccc-CChHHHHHHHHHHHcCC
Confidence 799999998 7999999999999999999999999999999999987644221 112222 24789999999999999
Q ss_pred EEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHHHH
Q 022174 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (301)
Q Consensus 89 ~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~~~ 168 (301)
++++|++++.++++||++++++++|+++..|+|.||++. .|..+|.+|+. +.+|+++++|+|++||+|++||++++
T Consensus 77 ~ii~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~---~E~~~~~~G~~-~~v~~~~~~kig~~IC~D~~fpe~~~ 152 (254)
T cd07576 77 AIVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFGD---SERAAFTPGDR-FPVVELRGLRVGLLICYDVEFPELVR 152 (254)
T ss_pred EEEEeccccCCCceEEEEEEECCCCCEeeEEEeeccCCc---chhhhccCCCC-ceEEEECCeEEEEEEeecCCCCHHHH
Confidence 999999888888999999999999999999999999762 47788999986 89999999999999999999999999
Q ss_pred HHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCCCc
Q 022174 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGE 248 (301)
Q Consensus 169 ~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~ 248 (301)
.++++|||+|++|++++. +. ..+|..+.++||+||++|+++||++|... +..|.|.|+|++|+|+
T Consensus 153 ~~~~~gadii~~p~~~~~-----~~--~~~~~~~~~~rA~en~~~vv~an~~G~~~--------~~~~~G~S~i~~p~G~ 217 (254)
T cd07576 153 ALALAGADLVLVPTALME-----PY--GFVARTLVPARAFENQIFVAYANRCGAED--------GLTYVGLSSIAGPDGT 217 (254)
T ss_pred HHHHCCCCEEEECCccCC-----Cc--chhhhhhhHHHHHhCCCEEEEEcccCCCC--------CceeeeeeEEECCCCC
Confidence 999999999999998643 11 24677889999999999999999999653 4678999999999999
Q ss_pred cccccCCCCCcEEEEEechhhHHhhhhccCcccccChh
Q 022174 249 IVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPE 286 (301)
Q Consensus 249 ~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~ 286 (301)
++++++.+ ++++++++|++.++..|..+++++|+|++
T Consensus 218 il~~~~~~-e~~~~~~id~~~~~~~R~~~~~~~~~~~~ 254 (254)
T cd07576 218 VLARAGRG-EALLVADLDPAALAAARRENPYLADRRPE 254 (254)
T ss_pred EeEecCCC-CeEEEEEcCHHHHHhhhhcCchhhhcCCC
Confidence 99999877 99999999999999999999999888764
No 12
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5.1e-50 Score=348.68 Aligned_cols=251 Identities=33% Similarity=0.548 Sum_probs=223.0
Q ss_pred EEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCc
Q 022174 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (301)
Q Consensus 10 kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (301)
|||++|+++ .++++.|++++.+++++|.++|+|||||||++++||...+.. ..+.+. .+++++.|+++|+++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~----~~~~~~-~~~~~~~l~~~a~~~~~ 75 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLY----ELADED-GGETVSFLSELAKKHGV 75 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHH----hhhccc-CchHHHHHHHHHHHcCc
Confidence 699999998 689999999999999999999999999999999999754321 112222 34789999999999999
Q ss_pred EEeeeee-ecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHHH
Q 022174 89 VMPVSFF-EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 167 (301)
Q Consensus 89 ~iv~G~~-~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~~ 167 (301)
++++|+. ++.++++||++++|+++|+++..|+|+||+++ +.|..+|.+|+. +.+|+++++|||++||+|.+||+++
T Consensus 76 ~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~-~~v~~~~~~rig~~IC~D~~~pe~~ 152 (253)
T cd07583 76 NIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDE-LEVFELDGGKVGLFICYDLRFPELF 152 (253)
T ss_pred EEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCC-ceEEEeCCeEEEEEEEeccccHHHH
Confidence 9999975 55677999999999999999999999999886 357788999985 8899999999999999999999999
Q ss_pred HHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCCC
Q 022174 168 RAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTG 247 (301)
Q Consensus 168 ~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G 247 (301)
+.++++|||+|++|++|+. ....+|..+.++||+||++|++++|++|... +..|.|.|+|++|+|
T Consensus 153 r~~~~~ga~ll~~ps~~~~-------~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~--------~~~~~G~S~ii~p~G 217 (253)
T cd07583 153 RKLALEGAEILFVPAEWPA-------ARIEHWRTLLRARAIENQAFVVACNRVGTDG--------GNEFGGHSMVIDPWG 217 (253)
T ss_pred HHHHHcCCcEEEECCCCCC-------CchHHHHHHHHHHHHHhCCEEEEEcCcccCC--------CceecceeEEECCCc
Confidence 9999999999999999753 2467898899999999999999999999753 467899999999999
Q ss_pred ccccccCCCCCcEEEEEechhhHHhhhhccCcccccC
Q 022174 248 EIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 284 (301)
Q Consensus 248 ~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~ 284 (301)
+++++++. +++++++++|++.++..|..+++++|+|
T Consensus 218 ~il~~~~~-~~~~~~~~i~l~~~~~~r~~~~~~~~~~ 253 (253)
T cd07583 218 EVLAEAGE-EEEILTAEIDLEEVAEVRKKIPVFKDRR 253 (253)
T ss_pred hhheecCC-CceEEEEEecHHHHHHHHHhCCchhhcC
Confidence 99999886 7899999999999999999999988875
No 13
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5.2e-50 Score=351.46 Aligned_cols=264 Identities=37% Similarity=0.605 Sum_probs=225.4
Q ss_pred EEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCc
Q 022174 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (301)
Q Consensus 10 kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (301)
|||++|+++ .+++++|++++.+++++|.++|+|||||||++++||...+.. +..+.......++.++.++++|+++++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRD-EAFALAEEVPDGASTRAWAELAAELGL 79 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHH-HHHHhhccCCCCchHHHHHHHHHHcCc
Confidence 699999998 689999999999999999999999999999999998754421 122222222334678999999999999
Q ss_pred EEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHHHH
Q 022174 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (301)
Q Consensus 89 ~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~~~ 168 (301)
+|++|++++.++++||++++++++|. +..|+|+||++ .|..+|.+|+..+.+++++++|+|++||||++||++++
T Consensus 80 ~i~~G~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~----~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D~~fpe~~r 154 (268)
T cd07580 80 YIVAGFAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN----EEKLLFEPGDLGLPVFDTPFGRIGVAICYDGWFPETFR 154 (268)
T ss_pred EEEeecccccCCceEEEEEEECCCCc-EEEEEEecCCc----hhcceecCCCCCCceEEcCCCcEEEEEECcccchHHHH
Confidence 99999988878899999999999995 78999999987 47789999985478999999999999999999999999
Q ss_pred HHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCCCc
Q 022174 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGE 248 (301)
Q Consensus 169 ~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~ 248 (301)
.++.+|||+|++|++|+.... .......+|..+.++||+||++||++||++|... ...+.|.|+|++|+|+
T Consensus 155 ~~~~~ga~li~~ps~~~~~~~-~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~~--------~~~~~G~S~ii~p~G~ 225 (268)
T cd07580 155 LLALQGADIVCVPTNWVPMPR-PPEGGPPMANILAMAAAHSNGLFIACADRVGTER--------GQPFIGQSLIVGPDGW 225 (268)
T ss_pred HHHHcCCCEEEEcCcccccCC-cccccCcHHHHhhHHHHhhCCcEEEEEeeeeecc--------CceEeeeeEEECCCCC
Confidence 999999999999999864211 1012235788889999999999999999999653 3688999999999999
Q ss_pred cccccCCC-CCcEEEEEechhhHHhhhhc--cCcccccChhhH
Q 022174 249 IVAAADDK-EEAVLVAQFDLDKLKSKRSS--WGVFRDRRPELY 288 (301)
Q Consensus 249 ~l~~~~~~-~~~~~~~~ld~~~~~~~r~~--~~~~~~~~~~~y 288 (301)
++++++.+ +++++++++|++.++.+|.. +|+++++|+++|
T Consensus 226 ~~~~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~r~~~y 268 (268)
T cd07580 226 PLAGPASGDEEEILLADIDLTAARRKRIWNSNDVLRDRRPDLY 268 (268)
T ss_pred eeeecCCCCCCeEEEEEecHHHHHHhhcCCcchhhhhcCcccC
Confidence 99998743 79999999999999999988 488999999887
No 14
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.9e-50 Score=348.48 Aligned_cols=254 Identities=37% Similarity=0.622 Sum_probs=224.1
Q ss_pred EEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCc
Q 022174 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (301)
Q Consensus 10 kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (301)
|||++|++. .+|++.|++++.+++++|.++|+|||||||++++||..........+...... ++.++.|+++|+++++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~i 79 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPID-GPTVRLFSELAKELGV 79 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCC-CcHHHHHHHHHHHcCe
Confidence 699999998 78999999999999999999999999999999999976543332333333332 3688999999999999
Q ss_pred EEeeeeeecCC--CeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHH
Q 022174 89 VMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEA 166 (301)
Q Consensus 89 ~iv~G~~~~~~--~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~ 166 (301)
+|++|.+++.+ +++||++++|+++|+++..|+|.||++ .|..+|.+|+. +.+|+++++|+|++||||++||++
T Consensus 80 ~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~-~~~~~~~~~~~g~~IC~D~~fpe~ 154 (258)
T cd07584 80 YIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQ-YPVFDTPFGKIGVMICYDMGFPEV 154 (258)
T ss_pred EEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCC-CeeEEcCCceEEEEEEcCccChHH
Confidence 99999987653 589999999999999999999999976 37778999985 889999999999999999999999
Q ss_pred HHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCC
Q 022174 167 ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPT 246 (301)
Q Consensus 167 ~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~ 246 (301)
++.++++|+|++++|++|+. ...++|....++||+||++||+.+|++|... +..+.|.|.+++|+
T Consensus 155 ~r~~~~~gadll~~ps~~~~-------~~~~~~~~~~~~rA~En~~~vv~~n~~g~~~--------~~~~~G~S~ii~p~ 219 (258)
T cd07584 155 ARILTLKGAEVIFCPSAWRE-------QDADIWDINLPARALENTVFVAAVNRVGNEG--------DLVLFGKSKILNPR 219 (258)
T ss_pred HHHHHHCCCcEEEECCccCC-------CCchHHHHHHHHHHHhCCcEEEEECccccCC--------CceecceeEEECCC
Confidence 99999999999999999753 2356888889999999999999999998643 46789999999999
Q ss_pred CccccccCCCCCcEEEEEechhhHHhhhhccCcccccC
Q 022174 247 GEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 284 (301)
Q Consensus 247 G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~ 284 (301)
|+++++++.++++++++++|++.++..|+..|++.|+|
T Consensus 220 G~il~~~~~~~~~~~~~~id~~~~~~~r~~~p~~~~~~ 257 (258)
T cd07584 220 GQVLAEASEEAEEILYAEIDLDAIADYRMTLPYLKDRK 257 (258)
T ss_pred CceeeecCCCCCcEEEEEeCHHHHHHHHhhCchhhhcC
Confidence 99999999888999999999999999999999998875
No 15
>PLN02798 nitrilase
Probab=100.00 E-value=1.9e-49 Score=350.77 Aligned_cols=267 Identities=27% Similarity=0.448 Sum_probs=228.5
Q ss_pred CCCCcceEEEEEecccCCCHHHHHHHHHHHHHHHHhCCCcEEEecccc-cCcccCCccchHHHhhcCCCCCChhHHHHHH
Q 022174 3 KGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELF-EGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (301)
Q Consensus 3 ~~~~~~~kia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (301)
.+|..+||||++|++..++++.|++++++++++|.++|+|||||||++ ++||...+ ..+.++... ++.++.|++
T Consensus 5 ~~~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~----~~~~~~~~~-~~~~~~l~~ 79 (286)
T PLN02798 5 ATAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGE----SLAIAEPLD-GPIMQRYRS 79 (286)
T ss_pred ccccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchh----hhhhcccCC-CHHHHHHHH
Confidence 567789999999999888999999999999999999999999999984 57765322 223333333 368999999
Q ss_pred HHHHhCcEEeeee-eec--CCCeeeEEEEEEcCCCCeecccccccCCC-----CCCCCcceeecCCCCCceeEEeCCceE
Q 022174 82 LAKELGVVMPVSF-FEE--ANNAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFQTKFAKI 153 (301)
Q Consensus 82 ~a~~~~i~iv~G~-~~~--~~~~~yN~~~~i~~~G~i~~~~~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~~~i 153 (301)
+|++++++|++|. .++ +++++||++++|+++|++++.|+|+||++ .+.+.|..+|.+|+. +.+++++++|+
T Consensus 80 ~A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~k~ 158 (286)
T PLN02798 80 LARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKT-IVAVDSPVGRL 158 (286)
T ss_pred HHHHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCe-eeEEecCCceE
Confidence 9999999999884 444 45789999999999999999999999943 223457788999985 88999999999
Q ss_pred EEEEeccCCcHHHHHHHH-HCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCc
Q 022174 154 GVAICWDQWFPEAARAMV-LQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKS 232 (301)
Q Consensus 154 g~~IC~D~~~pe~~~~~~-~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~ 232 (301)
|++||||.+||++++.++ ++|||+|++|++|+. .....+|..++++||+||++||+.+|++|... +
T Consensus 159 g~~IC~D~~fpe~~r~~a~~~Gadlil~ps~~~~------~~~~~~~~~~~~~rAien~~~vv~an~~G~~~-------~ 225 (286)
T PLN02798 159 GLTVCYDLRFPELYQQLRFEHGAQVLLVPSAFTK------PTGEAHWEVLLRARAIETQCYVIAAAQAGKHN-------E 225 (286)
T ss_pred EEEEEEcccChHHHHHHHHhCCCcEEEECCcCCC------CCcHHHHHHHHHHHHHHhCCEEEEecccCcCC-------C
Confidence 999999999999999998 999999999998753 12346888899999999999999999999643 1
Q ss_pred ceeeecceEEECCCCccccccCC-CCCcEEEEEechhhHHhhhhccCcccccChhhH
Q 022174 233 QITFYGNSFIAGPTGEIVAAADD-KEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELY 288 (301)
Q Consensus 233 ~~~~~G~S~i~~p~G~~l~~~~~-~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y 288 (301)
...+.|.|+|++|+|+++++++. +++++++++||++.++..|..+++++|+|++.|
T Consensus 226 ~~~~~G~S~ii~p~G~il~~~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~ 282 (286)
T PLN02798 226 KRESYGHALIIDPWGTVVARLPDRLSTGIAVADIDLSLLDSVRTKMPIAEHRRSLEF 282 (286)
T ss_pred CceeeeeeEEECCCccchhhcCCCCCCCEEEEEecHHHHHHHHHhCcchhccchhhh
Confidence 36788999999999999999874 578999999999999999999999999999876
No 16
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.3e-49 Score=347.60 Aligned_cols=264 Identities=30% Similarity=0.486 Sum_probs=226.0
Q ss_pred EEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCc
Q 022174 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (301)
Q Consensus 10 kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (301)
|||++|++. .++++.|++++.+++++|+++|+|||||||++++||...+. ..+.+... ..++++.|++.|+ ++
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~---~~~~~~~~-~~~~~~~l~~~a~--~~ 74 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDL---VYEVAMHA-DDPRLQALAEASG--GI 74 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhh---hhhhhccc-chHHHHHHHHHcC--CC
Confidence 699999998 68999999999999999999999999999999999976542 12222222 1355666666653 79
Q ss_pred EEeeeeeecC-CCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHHH
Q 022174 89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 167 (301)
Q Consensus 89 ~iv~G~~~~~-~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~~ 167 (301)
.|++|++++. ++++||++++| ++|++++.|+|+|||+++.|.|..+|++|+. +.+|+++++|||++||+|.+||++.
T Consensus 75 ~ii~G~~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~-~~vf~~~~~~ig~~IC~D~~fp~~~ 152 (269)
T cd07586 75 CVVFGFVEEGRDGRFYNSAAYL-EDGRVVHVHRKVYLPTYGLFEEGRYFAPGSH-LRAFDTRFGRAGVLICEDAWHPSLP 152 (269)
T ss_pred EEEEeCeEEcCCCcEEEEEEEe-cCCEEEEEEEeEeCCCCCccceeeeecCCCc-ceEEEeCCeEEEEEEEeccCCcHHH
Confidence 9999998776 48999999999 8999999999999988766778889999985 8999999999999999999999999
Q ss_pred HHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCCC
Q 022174 168 RAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTG 247 (301)
Q Consensus 168 ~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G 247 (301)
+.+.++|||+|++|++++............+|..+.++||+||++||++||++|..+ ...+.|.|++++|+|
T Consensus 153 ~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~--------~~~~~G~S~ii~p~G 224 (269)
T cd07586 153 YLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVED--------GVYFWGGSRVVDPDG 224 (269)
T ss_pred HHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCcC--------CceEeCCcEEECCCC
Confidence 999999999999999975421111122346899999999999999999999999654 367899999999999
Q ss_pred ccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHH
Q 022174 248 EIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYK 289 (301)
Q Consensus 248 ~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~ 289 (301)
+++++++.++++++++++|++.++..|...+++.++++++|.
T Consensus 225 ~il~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~ 266 (269)
T cd07586 225 EVVAEAPLFEEDLLVAELDRSAIRRARFFSPTFRDEDIRLVL 266 (269)
T ss_pred CEEEecCCccccEEEEEecHHHHHHHHhhCccccccChhhhh
Confidence 999999888889999999999999999999999999999885
No 17
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=6.8e-49 Score=347.13 Aligned_cols=258 Identities=24% Similarity=0.336 Sum_probs=219.1
Q ss_pred eEEEEEeccc-----CCCHHHHHHHHHHHHHHHHh--CCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHH
Q 022174 9 VVVSALQFAC-----TDDVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (301)
Q Consensus 9 ~kia~~Q~~~-----~~~~~~n~~~~~~~i~~A~~--~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (301)
++||++|+++ .+++++|++++.+++++|++ +|+|||||||++++||..... ...+.+...+ ++.++.|++
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~--~~~~~a~~~~-~~~~~~l~~ 77 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKW--TMDETACTVP-GPETDIFAE 77 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcc--hhhhhccCCC-ChhHHHHHH
Confidence 5899999997 47999999999999999986 599999999999999864321 1223333333 478899999
Q ss_pred HHHHhCcEEeeeeeecCC---CeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeC-CceEEEEE
Q 022174 82 LAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGVAI 157 (301)
Q Consensus 82 ~a~~~~i~iv~G~~~~~~---~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ig~~I 157 (301)
+|+++++++++|+.++.+ +++||++++|+++|+++.+|+|+||+. +...|.+|+..+.++++. ++|||++|
T Consensus 78 lA~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~~~v~~~~~g~riG~~I 152 (291)
T cd07565 78 ACKEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLGTPVCEGPKGSKIALII 152 (291)
T ss_pred HHHHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCCceeeECCCCCEEEEEE
Confidence 999999999999887653 689999999999999999999999843 123478997546788875 66999999
Q ss_pred eccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeee
Q 022174 158 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFY 237 (301)
Q Consensus 158 C~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~ 237 (301)
|||++|||++|.++++|||+|++|++|+. ....+|..+.++||+||++||+.||++|... .+.+.
T Consensus 153 CyD~~fPe~~r~la~~GAdill~ps~~~~-------~~~~~w~~~~~aRA~En~~~vv~aN~~G~~~--------~~~~~ 217 (291)
T cd07565 153 CHDGMYPEIARECAYKGAELIIRIQGYMY-------PAKDQWIITNKANAWCNLMYTASVNLAGFDG--------VFSYF 217 (291)
T ss_pred EcCCCCcHHHHHHHHCCCeEEEECCcCCC-------CcchHHHHHHHHHHHhcCcEEEEecccccCC--------Cceee
Confidence 99999999999999999999999999753 2346899999999999999999999999643 47899
Q ss_pred cceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHHHHHh
Q 022174 238 GNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 293 (301)
Q Consensus 238 G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~~~~ 293 (301)
|.|+|++|+|+++++++.++++++++++|++.++..|..+++ ++++|++..+
T Consensus 218 G~S~ivdP~G~ila~~~~~~e~i~~adid~~~~~~~R~~~~~----~~~~~~~~~~ 269 (291)
T cd07565 218 GESMIVNFDGRTLGEGGREPDEIVTAELSPSLVRDARKNWGS----ENNLYKLGHR 269 (291)
T ss_pred eeeEEECCCCCEEEeCCCCCCcEEEEEEcHHHHHHHHhcCCC----CCcHHHhhhh
Confidence 999999999999999988778999999999999999999986 4588877655
No 18
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.2e-49 Score=350.00 Aligned_cols=252 Identities=29% Similarity=0.441 Sum_probs=209.6
Q ss_pred EEEEEecccCCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcE
Q 022174 10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (301)
Q Consensus 10 kia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 89 (301)
|||++|+++..|+++|++++.+++++|+++|+|||||||++++||.... ...... .++.++.|+++|++++++
T Consensus 1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~------~~~~~~-~~~~~~~l~~lA~~~~i~ 73 (279)
T cd07579 1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPA------SEAESD-TGPAVSALRRLARRLRLY 73 (279)
T ss_pred CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChH------HhcccC-CCHHHHHHHHHHHHcCeE
Confidence 6999999996699999999999999999999999999999999985321 122222 247899999999999999
Q ss_pred EeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHHHHH
Q 022174 90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARA 169 (301)
Q Consensus 90 iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~~~~ 169 (301)
|++|++++.++++||++++++++| +++.|+|+||++ .|..+|.+|+. +.+|+++++|+|++||||++|||++|.
T Consensus 74 iv~G~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~----~E~~~f~~G~~-~~v~~~~~~kiG~~ICyD~~fPe~~r~ 147 (279)
T cd07579 74 LVAGFAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE----PERSWATPGDT-WPVYDLPLGRVGLLIGHDALFPEAGRV 147 (279)
T ss_pred EEEeceEccCCcEEEEEEEEeCCe-eEEEEecccCCC----cchhhccCCCC-CeeEEcCceeEEEEEeccccCcHHHHH
Confidence 999998888889999999999999 678999999976 47789999985 899999999999999999999999999
Q ss_pred HHHCCCcEEEeecccCCCCCCCC-----------CC--cHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceee
Q 022174 170 MVLQGAEILFYPTAIGSEPQDDG-----------LD--SRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITF 236 (301)
Q Consensus 170 ~~~~gadlil~p~~~~~~~~~~~-----------~~--~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~ 236 (301)
++++|||+|++|++|+....+.| .. ..++|. +.++||+||++||+.||++|.. ..+
T Consensus 148 ~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~~g~~----------~~~ 216 (279)
T cd07579 148 LALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANVPDPA----------RGY 216 (279)
T ss_pred HHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeeccCCc----------ccc
Confidence 99999999999999753100000 00 126887 6899999999999999999843 236
Q ss_pred ecceEEECCCCccccc----cCCCCCcEEEEEechhhHHhhhhccCcccccChhhHH
Q 022174 237 YGNSFIAGPTGEIVAA----ADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYK 289 (301)
Q Consensus 237 ~G~S~i~~p~G~~l~~----~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~ 289 (301)
.|.|+|++|.|.++.. + ..+|++++++||++.++. .++++.++|+++|+
T Consensus 217 ~G~S~ii~P~G~v~~~~~~~~-~~~e~~l~a~id~~~~~~---~~~~~~~rr~~~~~ 269 (279)
T cd07579 217 TGWSGVFGPDTFAFPRQEAAI-GDEEGIAWALIDTSNLDS---RYPTNVVRRKDLVR 269 (279)
T ss_pred ccccEEECCCeEEcchhhccc-CCCCcEEEEEecchhhcc---cCCchhhhhHHHHH
Confidence 7999999999999733 3 346889999999998887 45666666666663
No 19
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=7.1e-49 Score=343.75 Aligned_cols=257 Identities=36% Similarity=0.531 Sum_probs=221.3
Q ss_pred EEEEEecccCCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcE
Q 022174 10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (301)
Q Consensus 10 kia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 89 (301)
|||++|+++.+++++|++++.+++++|+++|+|||||||++++||...+... ........++.++.|+++|++++++
T Consensus 1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~---~~~~~~~~~~~~~~l~~~a~~~~i~ 77 (265)
T cd07572 1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKL---ALAEEEGDGPTLQALSELAKEHGIW 77 (265)
T ss_pred CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhh---hhhccccCChHHHHHHHHHHHCCeE
Confidence 6999999988999999999999999999999999999999999987543211 1011222347889999999999999
Q ss_pred Eeeee-eecCC--CeeeEEEEEEcCCCCeecccccccCCC-----CCCCCcceeecCCCCCceeEEeCCceEEEEEeccC
Q 022174 90 MPVSF-FEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQ 161 (301)
Q Consensus 90 iv~G~-~~~~~--~~~yN~~~~i~~~G~i~~~~~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~ 161 (301)
|++|. +++.+ +++||++++|+++|+++..|+|+||++ .+.+.|..+|.+|+. +.+|+++++|+|++||+|.
T Consensus 78 i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~ 156 (265)
T cd07572 78 LVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDE-VVVVDTPFGKIGLGICYDL 156 (265)
T ss_pred EEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCc-ceEEecCCceEEEEEEecc
Confidence 99884 46555 789999999999999999999999953 223568889999985 8899999999999999999
Q ss_pred CcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceE
Q 022174 162 WFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSF 241 (301)
Q Consensus 162 ~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~ 241 (301)
+||++++.++++|||+|++|++|+. .....+|..+.+.||+||+++++.||++|... +.+.+.|.|+
T Consensus 157 ~~pe~~r~~~~~gadli~~p~~~~~------~~~~~~~~~~~~~rA~e~~~~vv~~n~~G~~~-------~~~~~~G~S~ 223 (265)
T cd07572 157 RFPELARALARQGADILTVPAAFTM------TTGPAHWELLLRARAIENQCYVVAAAQAGDHE-------AGRETYGHSM 223 (265)
T ss_pred CcHHHHHHHHHCCCCEEEECCCCCC------CcchHHHHHHHHHHHHhcCCEEEEEcccccCC-------CCCeecceeE
Confidence 9999999999999999999998753 12356788889999999999999999999653 1367899999
Q ss_pred EECCCCccccccCCCCCcEEEEEechhhHHhhhhccCcccccC
Q 022174 242 IAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 284 (301)
Q Consensus 242 i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~ 284 (301)
|++|+|+++.+++.+ ++++++++|++.++..|..+++++|+|
T Consensus 224 i~~p~G~il~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~~~~ 265 (265)
T cd07572 224 IVDPWGEVLAEAGEG-EGVVVAEIDLDRLEEVRRQIPVLKHRR 265 (265)
T ss_pred EECCCcHHHhhcCCC-CcEEEEEeCHHHHHHHHHhCcchhhcC
Confidence 999999999999877 899999999999999999999888764
No 20
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.8e-48 Score=340.50 Aligned_cols=258 Identities=32% Similarity=0.527 Sum_probs=224.7
Q ss_pred EEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCc
Q 022174 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (301)
Q Consensus 10 kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (301)
|||++|+++ .+++++|++++++++++|+++|+|||||||++++||...+... .... ....+.++.++++|+++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~---~~~~-~~~~~~~~~l~~~a~~~~~ 76 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALS---REAE-VPDGPSTQALSDLARRYGL 76 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccc---hhcc-cCCChHHHHHHHHHHHcCc
Confidence 699999998 7899999999999999999999999999999999987643211 1111 1224788999999999999
Q ss_pred EEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHHHH
Q 022174 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (301)
Q Consensus 89 ~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~~~ 168 (301)
+|++|++++.++++||++++|+++|. +..|+|.||++. |..+|.+|+. +.+|+++++|+|++||+|++||++++
T Consensus 77 ~i~~G~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~~----E~~~~~~G~~-~~v~~~~~~rig~~IC~D~~~pe~~r 150 (261)
T cd07585 77 TILAGLIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFRR----EHPYIAAGDE-YPVFATPGVRFGILICYDNHFPENVR 150 (261)
T ss_pred EEEEeccccCCCceeEEEEEECCCCc-EeEEeeecCCcc----ccceEcCCCC-CceEEcCCceEEEEEEcCCcCcHHHH
Confidence 99999998888899999999999997 579999999873 7789999985 88999999999999999999999999
Q ss_pred HHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCCCc
Q 022174 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGE 248 (301)
Q Consensus 169 ~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~ 248 (301)
.++++|||+|++|++|+.. ......+.|...+++||+||++|++++|.+|... +..+.|.|++++|+|+
T Consensus 151 ~l~~~gadlil~p~~~~~~---~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~~--------~~~~~G~S~i~~p~G~ 219 (261)
T cd07585 151 ATALLGAEILFAPHATPGT---TSPKGREWWMRWLPARAYDNGVFVAACNGVGRDG--------GEVFPGGAMILDPYGR 219 (261)
T ss_pred HHHHCCCCEEEECCccCCC---CCcchHHHHHHHhHHHHhhcCeEEEEecccccCC--------CceecceEEEECCCCC
Confidence 9999999999999986532 1112457888889999999999999999999643 4678999999999999
Q ss_pred cccccCCCCCcEEEEEechhhHHhhhhc--cCcccccChhhH
Q 022174 249 IVAAADDKEEAVLVAQFDLDKLKSKRSS--WGVFRDRRPELY 288 (301)
Q Consensus 249 ~l~~~~~~~~~~~~~~ld~~~~~~~r~~--~~~~~~~~~~~y 288 (301)
++++++.++++++++++|++.++..|.. .++++|+|+++|
T Consensus 220 v~~~~~~~~e~~l~~~id~~~~~~~r~~~~~~~~~~~~~~~~ 261 (261)
T cd07585 220 VLAETTSGGDGMVVADLDLDLINTVRGRRWISFLRARRPELY 261 (261)
T ss_pred EEeccCCCCCcEEEEEecHHHHHHhhccccCccccccCccCC
Confidence 9999998889999999999999999976 577899988876
No 21
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=9e-49 Score=341.97 Aligned_cols=256 Identities=38% Similarity=0.627 Sum_probs=220.1
Q ss_pred EEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCc
Q 022174 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (301)
Q Consensus 10 kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (301)
|||++|+++ .+|++.|++++.+++++|+ +|||||||++++||.... ...+.+.++....+++++.|+++|+++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 76 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTS-KEEVASLAESIPDGPTTRFLQELARETGA 76 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCC-HHHHHHhhcccCCChHHHHHHHHHHHhCc
Confidence 699999998 6899999999999999884 999999999999997532 22233444433235789999999999999
Q ss_pred EEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHHHH
Q 022174 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (301)
Q Consensus 89 ~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~~~ 168 (301)
+|++|++++.++++||++++|+++| ++..|+|+||++ .|..+|++|+..+.+|+++++|+|++||||.+|||+++
T Consensus 77 ~ii~G~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~----~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~fpe~~r 151 (259)
T cd07577 77 YIVAGLPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY----EEKLFFEPGDTGFRVFDIGDIRIGVMICFDWYFPEAAR 151 (259)
T ss_pred EEEecceeccCCceEEEEEEECCCc-cEeeEeeccCCh----hhhccccCCCCCCceEEeCCcEEEEEEEcCcccchHHH
Confidence 9999999888889999999999999 899999999976 47788999984478999999999999999999999999
Q ss_pred HHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCCCc
Q 022174 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGE 248 (301)
Q Consensus 169 ~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~ 248 (301)
.++++|||+|++|++|+. .+|..++++||+||++|+++||++|.... +.+...+.|.|+|++|+|+
T Consensus 152 ~~~~~Gadli~~ps~~~~----------~~~~~~~~~rA~en~~~vv~~n~~G~~~~----~~~~~~~~G~S~i~~p~G~ 217 (259)
T cd07577 152 TLALKGADIIAHPANLVL----------PYCPKAMPIRALENRVFTITANRIGTEER----GGETLRFIGKSQITSPKGE 217 (259)
T ss_pred HHHHcCCCEEEECCccCC----------chhhhhhhHhhhhcCceEEEEecCcccCC----CCCCceEeeeeEEECCCCC
Confidence 999999999999999642 24667789999999999999999996531 1124678999999999999
Q ss_pred cccccCCCCCcEEEEEechhhHHhhh--hccCcccccChhhH
Q 022174 249 IVAAADDKEEAVLVAQFDLDKLKSKR--SSWGVFRDRRPELY 288 (301)
Q Consensus 249 ~l~~~~~~~~~~~~~~ld~~~~~~~r--~~~~~~~~~~~~~y 288 (301)
++++++.++++++++++|++.++..| ..++++.++|+++|
T Consensus 218 i~~~~~~~~e~~~~~~id~~~~~~~~~~~~~~~~~~~r~~~~ 259 (259)
T cd07577 218 VLARAPEDGEEVLVAEIDPRLARDKRINEENDIFKDRRPEFY 259 (259)
T ss_pred EEeecCCCCCcEEEEEEchHHhhcccccccCchhhhcCcccC
Confidence 99999888899999999999988755 67788899998876
No 22
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=6.2e-48 Score=335.95 Aligned_cols=253 Identities=31% Similarity=0.538 Sum_probs=221.1
Q ss_pred EEEEecccCCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEE
Q 022174 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (301)
Q Consensus 11 ia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 90 (301)
||++|++..+|+++|++++.+.+++|+++|+|||||||++++||...+. .+.+...+.. +.+++.|+++|+++++++
T Consensus 1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~--~~~~~~~~~~-~~~~~~l~~~a~~~~i~i 77 (255)
T cd07581 1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLD--DYARVAEPLD-GPFVSALARLARELGITV 77 (255)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchh--hHHhhhccCC-CHHHHHHHHHHHHcCeEE
Confidence 6899999989999999999999999999999999999999999865432 1222333333 378999999999999999
Q ss_pred eeeeeecCC-CeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCC-ceeEEeCCceEEEEEeccCCcHHHHH
Q 022174 91 PVSFFEEAN-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG-FKVFQTKFAKIGVAICWDQWFPEAAR 168 (301)
Q Consensus 91 v~G~~~~~~-~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~-~~~~~~~~~~ig~~IC~D~~~pe~~~ 168 (301)
++|++++.+ +++||++++|+++|+++.+|+|.||++...+.|..+|.+|+.. ..+++++++|+|++||+|.+||++++
T Consensus 78 v~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D~~~pe~~~ 157 (255)
T cd07581 78 VAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELPPVVFVVGGVKVGLATCYDLRFPELAR 157 (255)
T ss_pred EEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCCceEEecCCceEEEEEEecccCHHHHH
Confidence 999988765 4899999999999999999999999876666788899999852 46788888999999999999999999
Q ss_pred HHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCCCc
Q 022174 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGE 248 (301)
Q Consensus 169 ~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~ 248 (301)
.++++|||+|++|++|+.. ....++|..+.++||+||++|+++||.+|. .+.|.|+|++|+|+
T Consensus 158 ~~~~~ga~lil~ps~~~~~-----~~~~~~~~~~~~~rA~en~~~vv~~n~~g~------------~~~G~S~i~~p~G~ 220 (255)
T cd07581 158 ALALAGADVIVVPAAWVAG-----PGKEEHWETLLRARALENTVYVAAAGQAGP------------RGIGRSMVVDPLGV 220 (255)
T ss_pred HHHHCCCcEEEECCcccCC-----CCchHHHHHHHHHHHHHhCCEEEEEcCcCC------------CcccceEEECCCcc
Confidence 9999999999999997532 124678999999999999999999999983 46799999999999
Q ss_pred cccccCCCCCcEEEEEechhhHHhhhhccCcccccC
Q 022174 249 IVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 284 (301)
Q Consensus 249 ~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~ 284 (301)
++++++.. ++++++++|++.++..|...+++.|+|
T Consensus 221 i~~~~~~~-~~~l~~~id~~~~~~~r~~~~~~~~~~ 255 (255)
T cd07581 221 VLADLGER-EGLLVADIDPERVEEAREALPVLENRR 255 (255)
T ss_pred eeeecCCC-CcEEEEEeCHHHHHHHHHhCcchhcCC
Confidence 99999764 999999999999999999999988775
No 23
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=1.1e-47 Score=333.71 Aligned_cols=249 Identities=24% Similarity=0.389 Sum_probs=217.7
Q ss_pred eEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhC
Q 022174 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (301)
Q Consensus 9 ~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (301)
||||++|+++ .+|++.|++++.+++++|++ |+|||||||++++||...+. +.++... +..++.|+++|++++
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~-----~~~~~~~-~~~~~~l~~la~~~~ 73 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAE-----ALAEPMN-GPTLQWMKAQAKKKG 73 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHH-----HhhcccC-ChHHHHHHHHHHHCC
Confidence 7999999999 69999999999999999998 99999999999999865331 2233332 478999999999999
Q ss_pred cEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHHH
Q 022174 88 VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 167 (301)
Q Consensus 88 i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~~ 167 (301)
+.|++|.+++.++++||++++++++|++. .|+|+||++.+ .|..+|.+|+. ..+|+++++|+|++||+|++||++.
T Consensus 74 i~i~~~~~~~~~~~~yNs~~~i~~~G~i~-~y~K~~l~~~~--~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~~~pe~~ 149 (252)
T cd07575 74 AAITGSLIIKEGGKYYNRLYFVTPDGEVY-HYDKRHLFRMA--GEHKVYTAGNE-RVIVEYKGWKILLQVCYDLRFPVWS 149 (252)
T ss_pred eEEEEEEEEccCCceEEEEEEECCCCCEE-EEeeeecCCCC--CccceecCCCC-ceEEEECCEEEEEEEEeccCChHHH
Confidence 99998888877889999999999999865 99999997643 47788999985 7899999999999999999999999
Q ss_pred HHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCCC
Q 022174 168 RAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTG 247 (301)
Q Consensus 168 ~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G 247 (301)
+.+.. ||+|++|++|+. ....+|....++||+||++||+.||++|.+. .+..+.|.|+|++|+|
T Consensus 150 r~~~~--a~lil~~s~~~~-------~~~~~~~~~~~arA~en~~~vv~~n~~G~~~-------~~~~~~G~S~i~~p~G 213 (252)
T cd07575 150 RNTND--YDLLLYVANWPA-------PRRAAWDTLLKARAIENQAYVIGVNRVGTDG-------NGLEYSGDSAVIDPLG 213 (252)
T ss_pred HhhcC--CCEEEEeCCCCC-------CchHHHHHHhHHHHhhccceEEEecccccCC-------CCceEcceeEEECCCC
Confidence 98754 999999999753 2357888889999999999999999999653 1367899999999999
Q ss_pred ccccccCCCCCcEEEEEechhhHHhhhhccCcccccCh
Q 022174 248 EIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRP 285 (301)
Q Consensus 248 ~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~ 285 (301)
+++++++.+ ++++++++|++.++..|..+++++|++.
T Consensus 214 ~~l~~~~~~-e~~i~~~id~~~~~~~r~~~~~~~~~~~ 250 (252)
T cd07575 214 EPLAEAEED-EGVLTATLDKEALQEFREKFPFLKDADS 250 (252)
T ss_pred ceeeEcCCC-ceEEEEEECHHHHHHHHhhCCcccccCc
Confidence 999999877 9999999999999999999999987754
No 24
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=2.5e-47 Score=335.47 Aligned_cols=264 Identities=39% Similarity=0.596 Sum_probs=227.8
Q ss_pred ceEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHh
Q 022174 8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (301)
Q Consensus 8 ~~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (301)
.||||++|++. ..|...|++++.+++++|+++|+|||||||++++||...+ ..+.+.......++.++.++++|++.
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~--~~~~~~~~~~~~~~~~~~l~~~a~~~ 79 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED--DLFLEEAAAEAGEETLEFLAALAEEG 79 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc--HHHHHhhhhccCChHHHHHHHHHHhC
Confidence 68999999998 8999999999999999999999999999999999998765 33445555555568999999999977
Q ss_pred CcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHH
Q 022174 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEA 166 (301)
Q Consensus 87 ~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~ 166 (301)
.++|++|...... ..||++++++++|++++.|+|+||++. .+.|..++.||+....+++++++|+|++||||++|||+
T Consensus 80 ~~~ivg~~~~~~~-~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~D~~fPe~ 157 (274)
T COG0388 80 GVIIVGGPLPERE-KLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGVVVFETDGGKIGLLICYDLRFPEL 157 (274)
T ss_pred CeEEEEeeeeccc-cceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccceeEEeCCceEEEEEEeeccCHHH
Confidence 7777776554333 789999999999999999999999986 66799999999863359999999999999999999998
Q ss_pred HHHH-HHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECC
Q 022174 167 ARAM-VLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 245 (301)
Q Consensus 167 ~~~~-~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p 245 (301)
++.+ +.+||++|++|++|+.. ....+|..+.++||+||++||+.+|++|... + ...|.|.|+|++|
T Consensus 158 ~~~~~a~~Gaeii~~p~a~~~~------~~~~~w~~l~~arA~en~~~vv~~n~~g~~~-----~--~~~~~G~S~i~~p 224 (274)
T COG0388 158 ARRLLALGGAELLLVPAAWPAE------RGLDHWEVLLRARAIENQVYVLAANRAGFDG-----A--GLEFCGHSAIIDP 224 (274)
T ss_pred HHHHHHhcCCeEEEEcCCCCCc------ccHHHHHHHHHHHhhhcCceEEEecccCCCC-----C--ccEEecceEEECC
Confidence 8877 78899999999997642 2268999999999999999999999999643 1 2789999999999
Q ss_pred CCccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhH
Q 022174 246 TGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELY 288 (301)
Q Consensus 246 ~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y 288 (301)
+|++++++..++++++++++|++.+...|..++.+.+.+...+
T Consensus 225 ~G~v~~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~~~~~~ 267 (274)
T COG0388 225 DGEVLAEAGEEEEGVLLADIDLAELAEVRRKIPVLKDRRRFDL 267 (274)
T ss_pred CccEEeecCCCCCcEEEEEECHHHHHHHHhhCcchhhcccchh
Confidence 9999999988789999999999999999999997765544433
No 25
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=4.3e-48 Score=338.09 Aligned_cols=252 Identities=27% Similarity=0.439 Sum_probs=214.6
Q ss_pred EEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccc--hHHHhhcCCCCCChhHHHHHHHHHHh
Q 022174 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR--EDFFQRAKPYKDHPTILKMQELAKEL 86 (301)
Q Consensus 10 kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (301)
|||++|+++ .+|+++|++++.+++++|+++|+|||||||++++||...+.. ....+. ..+.++.|.+.++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~ 75 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEA-----AEEALEELAAATADL 75 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHH-----HHHHHHHHHHhcccC
Confidence 699999998 799999999999999999999999999999999999754321 111110 113455555555666
Q ss_pred CcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHH
Q 022174 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEA 166 (301)
Q Consensus 87 ~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~ 166 (301)
+++|++|.+++.++++||++++| ++|+++..|+|.||++++++.|..+|.+|+. ..+|+++++|||++||||++||++
T Consensus 76 ~i~ii~G~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~~fpe~ 153 (261)
T cd07570 76 DIAVVVGLPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYGVFDEKRYFTPGDK-PDVLFFKGLRIGVEICEDLWVPDP 153 (261)
T ss_pred CcEEEEeceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCccccccccCccCCC-CCeEEECCEEEEEEeecccCCCCc
Confidence 99999999988888999999999 6999999999999999888889999999986 789999999999999999999999
Q ss_pred -HHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECC
Q 022174 167 -ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 245 (301)
Q Consensus 167 -~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p 245 (301)
++.++++|||++++|++|+.. .....+|..+.++||+||++||+.||++|... +..|.|.|+|++|
T Consensus 154 ~~r~~~~~ga~ll~~ps~~~~~-----~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~--------~~~~~G~S~ii~p 220 (261)
T cd07570 154 PSAELALAGADLILNLSASPFH-----LGKQDYRRELVSSRSARTGLPYVYVNQVGGQD--------DLVFDGGSFIADN 220 (261)
T ss_pred hHHHHHHcCCcEEEEeCCCccc-----cCcHHHHHHHHHHHHHHhCCcEEEEeCCCCCc--------eEEEECceEEEcC
Confidence 999999999999999996531 12356788889999999999999999988543 4789999999999
Q ss_pred CCccccccCCCCCcEEEEEechhhHHhhhhccCccccc
Q 022174 246 TGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDR 283 (301)
Q Consensus 246 ~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~ 283 (301)
+|+++++++.+ +.+++++|++.++..|...+..++.
T Consensus 221 ~G~vl~~~~~~--~~~~~~id~~~~~~~r~~~~~~~~~ 256 (261)
T cd07570 221 DGELLAEAPRF--EEDLADVDLDRLRSERRRNSSFLDE 256 (261)
T ss_pred CCCEEEecCcc--eEEEEEEEEecCcccccccCCCccc
Confidence 99999998765 6789999999999999888766543
No 26
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.1e-47 Score=333.11 Aligned_cols=254 Identities=30% Similarity=0.419 Sum_probs=214.4
Q ss_pred eEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhC
Q 022174 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (301)
Q Consensus 9 ~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (301)
+|||++|++. .+|++.|++++.+++++|+++|+|||||||++++||...+. .+..+..+.. .++.++.|+++|++++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~-~~~~~~~~~~-~~~~~~~l~~~a~~~~ 78 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDR-AEIAPFVEPI-PGPTTARFAELAREHD 78 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCH-HHhhhhcccC-CCHHHHHHHHHHHHcC
Confidence 5899999998 78999999999999999999999999999999999975442 1122223322 2367899999999999
Q ss_pred cEEeeeeeecC--CCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHH
Q 022174 88 VVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPE 165 (301)
Q Consensus 88 i~iv~G~~~~~--~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe 165 (301)
++|++|.+++. ++++||++++|+++| ++..|+|.|+.. .|..+|.+|+..+.+|+++++|+|++||||++||+
T Consensus 79 i~ii~G~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~----~e~~~~~~g~~~~~v~~~~~~rig~~IC~D~~fpe 153 (258)
T cd07578 79 CYIVVGLPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI----SEPKWAADGDLGHQVFDTEIGRIALLICMDIHFFE 153 (258)
T ss_pred cEEEEecceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc----ccccccCCCCCCceEEECCCccEEEEEeeCCCchH
Confidence 99999988764 468999999999988 788999999754 47788999985578999999999999999999999
Q ss_pred HHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECC
Q 022174 166 AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 245 (301)
Q Consensus 166 ~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p 245 (301)
+++.+.++||+++++|++|... .....+| .+||+||++|++.||++|... ...+.|.|++++|
T Consensus 154 ~~r~~~~~ga~ll~~ps~~~~~-----~~~~~~~----~~rA~en~~~vv~an~~G~~~--------~~~~~G~S~ii~p 216 (258)
T cd07578 154 TARLLALGGADVICHISNWLAE-----RTPAPYW----INRAFENGCYLIESNRWGLER--------GVQFSGGSCIIEP 216 (258)
T ss_pred HHHHHHHcCCCEEEEcCCCCCC-----CCcchHH----HHhhhcCCeEEEEecceeccC--------CcceeeEEEEECC
Confidence 9999999999999999997531 1122344 479999999999999999643 3688999999999
Q ss_pred CCccccccCCCCCcEEEEEechhhHHhhhhc-cCcccccChhh
Q 022174 246 TGEIVAAADDKEEAVLVAQFDLDKLKSKRSS-WGVFRDRRPEL 287 (301)
Q Consensus 246 ~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~-~~~~~~~~~~~ 287 (301)
+|+++++++. ++++++++||++.++..|.. +++++++|+++
T Consensus 217 ~G~il~~~~~-~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~ 258 (258)
T cd07578 217 DGTIQASIDS-GDGVALGEIDLDRARHRQFPGELVFTARRPEL 258 (258)
T ss_pred CCcEeeccCC-CCceEEEEecchHhhhhhcccchhhhhhccCC
Confidence 9999998874 57999999999999999975 78889888863
No 27
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=1.1e-46 Score=338.12 Aligned_cols=260 Identities=20% Similarity=0.255 Sum_probs=216.8
Q ss_pred CcceEEEEEeccc-----CCCHHHHHHHHHHHHHHHH--hCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHH
Q 022174 6 RREVVVSALQFAC-----TDDVSTNLATAERLVRAAH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (301)
Q Consensus 6 ~~~~kia~~Q~~~-----~~~~~~n~~~~~~~i~~A~--~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (301)
+..++||++|+++ ..++..|++++.+++++|+ ..++|||||||++++||.... .+..+.+..++ ++..+.
T Consensus 10 ~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~--~~~~~~a~~i~-g~~~~~ 86 (345)
T PRK13286 10 NDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDR--QEMYETASTIP-GEETAI 86 (345)
T ss_pred CCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcCh--HHHHHhcccCC-CHHHHH
Confidence 4579999999984 3689999999999999987 458999999999999975432 22344455444 478899
Q ss_pred HHHHHHHhCcEEeeeee-ec----CCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeC-Cce
Q 022174 79 MQELAKELGVVMPVSFF-EE----ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAK 152 (301)
Q Consensus 79 l~~~a~~~~i~iv~G~~-~~----~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ 152 (301)
|+++|++++++++++.. ++ .++.+||++++|+++|+++.+|+|.|++. +..+|.||+. ..+++++ +.|
T Consensus 87 l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~-----~~e~~~pG~~-~~v~~~~~G~k 160 (345)
T PRK13286 87 FAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC-----PIEGWYPGDC-TYVSEGPKGLK 160 (345)
T ss_pred HHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc-----hhhceecCCC-CEEEeCCCCcE
Confidence 99999999999998765 33 13569999999999999999999999643 2345789986 6788886 459
Q ss_pred EEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCc
Q 022174 153 IGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKS 232 (301)
Q Consensus 153 ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~ 232 (301)
||++||||.+|||++|.++++|||+|++|++|+. ...++|..+.++||+||++||+.||++|..+
T Consensus 161 iG~lIC~D~~fPE~~R~la~~GAelii~psa~~~-------~~~~~~~~~~rarA~eN~~yVv~aN~~G~~~-------- 225 (345)
T PRK13286 161 ISLIICDDGNYPEIWRDCAMKGAELIVRCQGYMY-------PAKEQQVLVAKAMAWANNCYVAVANAAGFDG-------- 225 (345)
T ss_pred EEEEEEecccChHHHHHHHHcCCeEEEEccccCC-------CchHHHHHHHHHHHHHCCCEEEEEecccccC--------
Confidence 9999999999999999999999999999998643 2356889999999999999999999999543
Q ss_pred ceeeecceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHHHHHh
Q 022174 233 QITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 293 (301)
Q Consensus 233 ~~~~~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~~~~ 293 (301)
.+.|.|.|+|++|+|+++++++.+++++++++||++.++..|..++.. +++|++..+
T Consensus 226 ~~~~~G~S~Ivdp~G~vla~~~~~~e~ii~adld~~~i~~~R~~~~~~----n~~~~~~~~ 282 (345)
T PRK13286 226 VYSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSVSQIRDARRNDQSQ----NHLFKLLHR 282 (345)
T ss_pred CceeeeeEEEECCCCcEEEecCCCCCeEEEEEEeHHHHHHHHHhCCcc----cchhhhccc
Confidence 478999999999999999999887789999999999999999998765 446665543
No 28
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=4.4e-47 Score=334.68 Aligned_cols=242 Identities=23% Similarity=0.262 Sum_probs=201.1
Q ss_pred eEEEEEeccc-CCCH-------HHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchH-HHhh-----------c-
Q 022174 9 VVVSALQFAC-TDDV-------STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRED-FFQR-----------A- 67 (301)
Q Consensus 9 ~kia~~Q~~~-~~~~-------~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~-~~~~-----------~- 67 (301)
.|+|++|... +.+. ++|++++.++|++|+++|+|||||||++++||...+.... +.+. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (299)
T cd07567 1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD 80 (299)
T ss_pred CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence 3789999998 5554 8999999999999999999999999999999976442211 1000 0
Q ss_pred -CCCCCChhHHHHHHHHHHhCcEEeeeeeecC-----------C-CeeeEEEEEEcCCCCeecccccccCCCCCCCCcce
Q 022174 68 -KPYKDHPTILKMQELAKELGVVMPVSFFEEA-----------N-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKF 134 (301)
Q Consensus 68 -~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~-----------~-~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~ 134 (301)
.....+++++.|+++|++++++|++|+.++. + +++||++++|+++|+++++|+|+||+ .|..
T Consensus 81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~ 155 (299)
T cd07567 81 PDRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPG 155 (299)
T ss_pred ccccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----cccc
Confidence 0112246889999999999999999987763 2 36999999999999999999999996 3778
Q ss_pred eecCCCCCceeEEeCCc-eEEEEEeccCCcHHHHHHHHHC-CCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcc
Q 022174 135 YFNPGDTGFKVFQTKFA-KIGVAICWDQWFPEAARAMVLQ-GAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVV 212 (301)
Q Consensus 135 ~~~~G~~~~~~~~~~~~-~ig~~IC~D~~~pe~~~~~~~~-gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~ 212 (301)
+|.+|+..+.+|+++++ |||++||||++|||++|.++++ |||+|++|++|+.. ....+|..+.++||+||++
T Consensus 156 ~~~~G~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~~~------~~~~~w~~l~~arA~eN~~ 229 (299)
T cd07567 156 FDVPPEPEIVTFDTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWFSE------LPFLTAVQIQQAWAYANGV 229 (299)
T ss_pred ccCCCCCCceEEECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccCCC------CCchhHHHHHHHHHHHcCc
Confidence 89999745789999976 9999999999999999999999 99999999998531 1235899999999999999
Q ss_pred eEEEecCccccccccccCCcceeeecceEEECCC-CccccccCC-CCCcEEEEEechhhHHh
Q 022174 213 PLVASNRIGKEIIETEHGKSQITFYGNSFIAGPT-GEIVAAADD-KEEAVLVAQFDLDKLKS 272 (301)
Q Consensus 213 ~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~-G~~l~~~~~-~~~~~~~~~ld~~~~~~ 272 (301)
||+.||++|.. .+.|+|+|++|+ |+++++++. .++++++++||++..+.
T Consensus 230 ~vi~~N~~g~~-----------~~~G~S~iv~P~~G~v~a~~~~~~~e~~l~~~id~~~~~~ 280 (299)
T cd07567 230 NLLAANYNNPS-----------AGMTGSGIYAGRSGALVYHYDNEPGGKLLVAEVPKLPSRR 280 (299)
T ss_pred eEEEecCCCCc-----------CccccceEEcCCCCcEEEEecCCCCceEEEEEccCCcccc
Confidence 99999999842 356999999999 999999864 36889999999987553
No 29
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-47 Score=310.35 Aligned_cols=265 Identities=29% Similarity=0.487 Sum_probs=231.2
Q ss_pred eEEEEEecccCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccc-CcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhC
Q 022174 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (301)
Q Consensus 9 ~kia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (301)
.+||++|+....|...|++...++|++|+++|+++|.|||.+- -| +...+-.+.+++. ++++++.++++|++++
T Consensus 16 ~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~----~n~~esi~Lae~l-~~k~m~~y~elar~~n 90 (295)
T KOG0807|consen 16 KRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIG----QNPLESIELAEPL-DGKFMEQYRELARSHN 90 (295)
T ss_pred ceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhc----CCcccceeccccc-ChHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999872 22 1122233445553 4589999999999999
Q ss_pred cEEeeeee-ecCC---CeeeEEEEEEcCCCCeecccccccC-----CCCCCCCcceeecCCCCCceeEEeCCceEEEEEe
Q 022174 88 VVMPVSFF-EEAN---NAHYNSIAIIDADGSDLGLYRKSHI-----PDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 158 (301)
Q Consensus 88 i~iv~G~~-~~~~---~~~yN~~~~i~~~G~i~~~~~K~~l-----~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 158 (301)
|++..|.. ++.+ .+++|+-++|+.+|+++..|+|.|| |+.+.+.|..+..||....++++++-||+|+.||
T Consensus 91 IwlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGlaIC 170 (295)
T KOG0807|consen 91 IWLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGLAIC 170 (295)
T ss_pred eeEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccceeee
Confidence 99998754 4432 5899999999999999999999999 4456678999999999877889999999999999
Q ss_pred ccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeec
Q 022174 159 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYG 238 (301)
Q Consensus 159 ~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G 238 (301)
||+.|||++..+.+.||+++..|+++.. .++..||+.+.++||+|++|||+.+.++|... .....+|
T Consensus 171 YDiRFpE~sl~LR~~gA~iLtyPSAFT~------~TG~AHWEiLlRARAietQCYVvaaaQ~G~Hn-------eKR~SyG 237 (295)
T KOG0807|consen 171 YDIRFPELSLKLRKMGAQILTYPSAFTI------KTGEAHWEILLRARAIETQCYVVAAAQVGKHN-------EKRESYG 237 (295)
T ss_pred eeccCchHHHHHHHcCCcEEeccchhhh------cccHHHHHHHHHHHHhhcceEEEehhhccccc-------chhhccC
Confidence 9999999999999999999999999654 35689999999999999999999999999753 2346789
Q ss_pred ceEEECCCCccccccCCC-CCcEEEEEechhhHHhhhhccCcccccChhhHHHH
Q 022174 239 NSFIAGPTGEIVAAADDK-EEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVL 291 (301)
Q Consensus 239 ~S~i~~p~G~~l~~~~~~-~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~~ 291 (301)
.|+|+||.|.++++++.. ..++++++||++.++..|+.+|.+.++|+|+|...
T Consensus 238 hSMiVDPWGtVva~~se~~~~~l~~AdiDlslld~lr~~mP~~~hRr~dly~~~ 291 (295)
T KOG0807|consen 238 HSMIVDPWGTVVARCSERTGPGLILADIDLSLLDSLRTKMPLFNHRRNDLYTLF 291 (295)
T ss_pred cceEEcchhhhheecCCCCCCceEEEEccHHHHHHHHHhCchhhhcccchhhhh
Confidence 999999999999999865 48999999999999999999999999999999654
No 30
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=4.8e-46 Score=333.63 Aligned_cols=260 Identities=21% Similarity=0.316 Sum_probs=217.2
Q ss_pred cceEEEEEeccc-----CCCHHHHHHHHHHHHHHHHhC--CCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHH
Q 022174 7 REVVVSALQFAC-----TDDVSTNLATAERLVRAAHGK--GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM 79 (301)
Q Consensus 7 ~~~kia~~Q~~~-----~~~~~~n~~~~~~~i~~A~~~--~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (301)
++||||++|+++ .+++++|++++.+++++|++. ++|||||||++++||...... ..+.+...+ ++.++.|
T Consensus 12 ~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~--~~~~a~~~~-g~~~~~l 88 (333)
T PRK13287 12 EGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWT--TEEFLCTVD-GPEVDAF 88 (333)
T ss_pred CceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccc--hhhhcccCC-CHHHHHH
Confidence 579999999996 379999999999999999874 899999999999999754211 112233333 4789999
Q ss_pred HHHHHHhCcEEeeeeeecC-CC-eeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeC-CceEEEE
Q 022174 80 QELAKELGVVMPVSFFEEA-NN-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGVA 156 (301)
Q Consensus 80 ~~~a~~~~i~iv~G~~~~~-~~-~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ig~~ 156 (301)
+++|+++++++++|..++. ++ ++||++++|+++|+++.+|+|+|+.. ....|.||+..+++++++ +.|+|++
T Consensus 89 ~~~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~~~v~~~~~g~kiG~~ 163 (333)
T PRK13287 89 AQACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLGIPVCDGPGGSKLAVC 163 (333)
T ss_pred HHHHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCCCceEECCCCceEEEE
Confidence 9999999999999987654 33 49999999999999999999999732 123578997446788886 5699999
Q ss_pred EeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceee
Q 022174 157 ICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITF 236 (301)
Q Consensus 157 IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~ 236 (301)
||||.+|||++|.++++|||+|++|++|+. ...++|....++||.||+++++.||++|..+ .+.+
T Consensus 164 ICyD~~fPe~~R~~a~~GAeill~~s~~~~-------~~~~~w~~~~~arA~en~~~vv~an~~G~~~--------~~~~ 228 (333)
T PRK13287 164 ICHDGMFPEMAREAAYKGANVMIRISGYST-------QVREQWILTNRSNAWQNLMYTASVNLAGYDG--------VFYY 228 (333)
T ss_pred EEecccchHHHHHHHHCCCeEEEECCccCC-------cchhHHHHHHHHHHHhCCcEEEEEeccccCC--------Ceee
Confidence 999999999999999999999999998653 2357888889999999999999999999653 4788
Q ss_pred ecceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHHHHHh
Q 022174 237 YGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 293 (301)
Q Consensus 237 ~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~~~~ 293 (301)
.|.|+|++|+|+++++++.+++++++++||++.++.+|..+++ ++++|++.-+
T Consensus 229 ~G~S~Iidp~G~vl~~~~~~~~~ii~aeid~~~~~~~R~~~~~----~n~~~~~~~~ 281 (333)
T PRK13287 229 FGEGQVCNFDGTTLVQGHRNPWEIVTAEVRPDLADEARLGWGL----ENNIYNLGHR 281 (333)
T ss_pred eeeeEEECCCCcEEEeCCCCCCeEEEEEEeHHHHHHHHHhcCc----cccchhhccc
Confidence 9999999999999999988888999999999999999999886 3555555433
No 31
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.6e-46 Score=331.45 Aligned_cols=264 Identities=27% Similarity=0.390 Sum_probs=216.7
Q ss_pred eEEEEEeccc-C-CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccC---Cccc--hHHHhhcCCCCCChhHHHHHH
Q 022174 9 VVVSALQFAC-T-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFC---QAQR--EDFFQRAKPYKDHPTILKMQE 81 (301)
Q Consensus 9 ~kia~~Q~~~-~-~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~---~~~~--~~~~~~~~~~~~~~~~~~l~~ 81 (301)
||||++|+++ . +++++|++++++++++|+++|+|||||||++++||.. .+.. .+........ .+++++.|++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 79 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAAL-TPDYVALFSE 79 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHH-HHHHHHHHHH
Confidence 7999999998 3 7999999999999999999999999999999988532 1111 1111111111 2368899999
Q ss_pred HHHHhCcEEeeee-eecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEecc
Q 022174 82 LAKELGVVMPVSF-FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWD 160 (301)
Q Consensus 82 ~a~~~~i~iv~G~-~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D 160 (301)
+|++++++|++|+ +++.++++||++++++++|++ ..|+|.||++++ .|..++.+|+. +.+|+++++|+|++||||
T Consensus 80 ~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~-~~v~~~~~~~ig~~IC~D 155 (280)
T cd07574 80 LARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDK-LKVFDTDLGKIGILICYD 155 (280)
T ss_pred HHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCC-ceEEecCCccEEEEEecc
Confidence 9999999999996 456778999999999999987 899999998852 24456789985 789999999999999999
Q ss_pred CCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecce
Q 022174 161 QWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNS 240 (301)
Q Consensus 161 ~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S 240 (301)
++||++++.++++|||+|++|++++.. ....+|...+++||+||++|+++||++|.... ......++|.|
T Consensus 156 ~~fpe~~r~l~~~ga~ii~~ps~~~~~------~~~~~~~~~~~arA~en~~~vv~an~~G~~~~----~~~~~~~~G~S 225 (280)
T cd07574 156 SEFPELARALAEAGADLLLVPSCTDTR------AGYWRVRIGAQARALENQCYVVQSGTVGNAPW----SPAVDVNYGQA 225 (280)
T ss_pred cccHHHHHHHHHcCCCEEEECCcCCcc------ccHHHHHHHHHHHHHhhCceEEEeCCCCCCCC----ccccccccccc
Confidence 999999999999999999999986431 23446666789999999999999999996530 01135789999
Q ss_pred EEECCC------CccccccCCCCCcEEEEEechhhHHhhhhccCc--ccccChhh
Q 022174 241 FIAGPT------GEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGV--FRDRRPEL 287 (301)
Q Consensus 241 ~i~~p~------G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~--~~~~~~~~ 287 (301)
+|++|. |+++++++.++++++++++|++.++..|..++. ++++|+|+
T Consensus 226 ~i~~P~~~~~~~g~~l~~~~~~~e~~~~a~iD~~~~~~~R~~~~~~~~~~~~~~~ 280 (280)
T cd07574 226 AVYTPCDFGFPEDGILAEGEPNTEGWLIADLDLEALRRLREEGSVRNLRDWREDL 280 (280)
T ss_pred eeecCCCCCCCCCCeEeecCCCCCceEEEecCHHHHHHHhhcCCccCcccCcccC
Confidence 999996 889999887789999999999999999999764 67888764
No 32
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.1e-45 Score=326.10 Aligned_cols=260 Identities=26% Similarity=0.342 Sum_probs=213.0
Q ss_pred EEEEEeccc-C----CCHHHHHHHHHHHHHHHHh-----CCCcEEEecccccCcccCCccchH--HHhhcCCCCCChhHH
Q 022174 10 VVSALQFAC-T----DDVSTNLATAERLVRAAHG-----KGANIILIQELFEGYYFCQAQRED--FFQRAKPYKDHPTIL 77 (301)
Q Consensus 10 kia~~Q~~~-~----~~~~~n~~~~~~~i~~A~~-----~~~dlvvfPE~~l~g~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (301)
.++.+|... . +|++.|++++.++|++|++ +|+|||||||++++||...+.... +.+.++..+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~-~~~~~ 80 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIP-GPETE 80 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCC-CHHHH
Confidence 467889887 3 7999999999999999987 479999999999999976543221 234455543 47899
Q ss_pred HHHHHHHHhCcEEeeeeeecCC---CeeeEEEEEEcCCCCeecccccccCCCCCC-------CCc-ceeecCC-CCCcee
Q 022174 78 KMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG-------YQE-KFYFNPG-DTGFKV 145 (301)
Q Consensus 78 ~l~~~a~~~~i~iv~G~~~~~~---~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~-------~~e-~~~~~~G-~~~~~~ 145 (301)
.|+++|++++++|++|..++.+ +++||++++|+++|+++++|+|+||+...+ +.| ..++.+| ...+.+
T Consensus 81 ~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~~~~v 160 (294)
T cd07582 81 ALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDALFPV 160 (294)
T ss_pred HHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCccccccee
Confidence 9999999999999999887653 689999999999999999999999975311 111 1234454 334688
Q ss_pred EEeCCceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCcccccc
Q 022174 146 FQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEII 225 (301)
Q Consensus 146 ~~~~~~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~ 225 (301)
++++++|||++||||++||++++.++++|||+|++|++|+.. ....+|..+.++||+||++||+.||++|..+.
T Consensus 161 ~~~~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~psa~~~~------~~~~~~~~~~~arA~en~~~vv~aN~~G~~~~ 234 (294)
T cd07582 161 ADTEIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSSSEVPS------VELDPWEIANRARALENLAYVVSANSGGIYGS 234 (294)
T ss_pred ecCCCceEEEEEeecccChHHHHHHHHCCCcEEEEcCCCCCC------cchhhHHHHHHHHHHhcCCEEEEecccccCcc
Confidence 999999999999999999999999999999999999997531 13467888899999999999999999986531
Q ss_pred ccccCCcceeeecceEEECCCCccccccCCC-CCcEEEEEechhhHHhhhhccCcc
Q 022174 226 ETEHGKSQITFYGNSFIAGPTGEIVAAADDK-EEAVLVAQFDLDKLKSKRSSWGVF 280 (301)
Q Consensus 226 ~~~~g~~~~~~~G~S~i~~p~G~~l~~~~~~-~~~~~~~~ld~~~~~~~r~~~~~~ 280 (301)
+ .....|.|.|+|++|+|+++++++.+ ++++++++||++.++..|+.++.-
T Consensus 235 ~----~~~~~~~G~S~ivdp~G~vla~~~~~~~e~il~~~id~~~~~~~R~~~~~~ 286 (294)
T cd07582 235 P----YPADSFGGGSMIVDYKGRVLAEAGYGPGSMVAGAEIDIEALRRARARPGMH 286 (294)
T ss_pred c----ccCceecceeEEECCCCCEEEeCCCCCCCeEEEEEEcHHHHHHHHHhcCcc
Confidence 0 11357889999999999999999887 789999999999999999887653
No 33
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=3.1e-45 Score=318.28 Aligned_cols=250 Identities=42% Similarity=0.713 Sum_probs=218.9
Q ss_pred EEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcE
Q 022174 11 VSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (301)
Q Consensus 11 ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 89 (301)
||++|+++ .+++++|++++.+.+++|.++|+|+|||||++++||......... +.... .....++.|+++|++++++
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~-~~~~~-~~~~~~~~l~~~a~~~~i~ 78 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDL-DLAEE-LDGPTLEALAELAKELGIY 78 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhh-hhccc-CCchHHHHHHHHHHHhCeE
Confidence 68999999 699999999999999999999999999999999998764421110 11111 2247899999999999999
Q ss_pred EeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCcHHHHHH
Q 022174 90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARA 169 (301)
Q Consensus 90 iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~pe~~~~ 169 (301)
|++|++++.++++||++++++++|+++..|+|.||+++ .|..+|.+|+. ..+|+++++|+|++||+|+++|+.++.
T Consensus 79 ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~~---~E~~~~~~g~~-~~~f~~~~~~ig~~IC~d~~~~~~~~~ 154 (253)
T cd07197 79 IVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFDF---GERRYFSPGDE-FPVFDTPGGKIGLLICYDLRFPELARE 154 (253)
T ss_pred EEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCCC---cccceecCCCC-CceEEcCCceEEEEEEecCCCcHHHHH
Confidence 99999988888999999999999999999999999883 57788999986 789999999999999999999999999
Q ss_pred HHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCCCcc
Q 022174 170 MVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEI 249 (301)
Q Consensus 170 ~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~~ 249 (301)
+..+|+|+|++|++++. ....+|..+.+.||+|+++|+++||.+|... +..+.|.|.|++|+|++
T Consensus 155 ~~~~g~dli~~ps~~~~-------~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~--------~~~~~G~S~i~~p~G~~ 219 (253)
T cd07197 155 LALKGADIILVPAAWPT-------ARREHWELLLRARAIENGVYVVAANRVGEEG--------GLEFAGGSMIVDPDGEV 219 (253)
T ss_pred HHHCCCcEEEECCcCCC-------cchHHHHHHHHHHHHHhCCeEEEecCCCCCC--------CccccceeEEECCCCce
Confidence 99999999999999653 1267888999999999999999999999643 47889999999999999
Q ss_pred ccccCCCCCcEEEEEechhhHHhhhhccCcccc
Q 022174 250 VAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD 282 (301)
Q Consensus 250 l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~ 282 (301)
+++.+.+ ++++++++|++.++..|..++.+.+
T Consensus 220 ~~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~~ 251 (253)
T cd07197 220 LAEASEE-EGILVAELDLDELREARKRWSYLRD 251 (253)
T ss_pred eeecCCC-CcEEEEEeCHHHHHHHHhhCCcccc
Confidence 9999887 9999999999999999998755443
No 34
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=8.4e-44 Score=339.63 Aligned_cols=238 Identities=29% Similarity=0.435 Sum_probs=208.9
Q ss_pred eEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccc--hHHHhhcCCCCCChhHHHHHHHHHH
Q 022174 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR--EDFFQRAKPYKDHPTILKMQELAKE 85 (301)
Q Consensus 9 ~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~a~~ 85 (301)
||||++|+++ .+|++.|++++.+++++|+++|+|||||||++++||...+.. ..+.. ...+.+.++|++
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~~--------~~~~~l~~La~~ 72 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFLA--------ACEAALERLAAA 72 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHHH--------HHHHHHHHHHHh
Confidence 7999999998 799999999999999999999999999999999999765421 11111 334566777776
Q ss_pred --hCcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCCc
Q 022174 86 --LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWF 163 (301)
Q Consensus 86 --~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~ 163 (301)
+++.|++|.+++.++++||++++|+ +|++++.|+|+||++++.|.|..+|.+|+. ..+|+++++|+|++||+|++|
T Consensus 73 ~~~~i~ii~G~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~-~~~~~~~g~rigv~IC~D~~~ 150 (540)
T PRK13981 73 TAGGPAVLVGHPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYGVFDEKRYFAPGPE-PGVVELKGVRIGVPICEDIWN 150 (540)
T ss_pred cCCCCEEEEeCcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCCCCcCccccccCCCC-ceEEEECCEEEEEEEehhhcC
Confidence 6999999998877889999999996 899999999999999998999999999985 789999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEE
Q 022174 164 PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIA 243 (301)
Q Consensus 164 pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~ 243 (301)
|++++.++.+|||+|++|++|+.. .....+|..+.++||+||++|+++||++|.. ++..|.|.|+|+
T Consensus 151 pe~~r~la~~Gadlil~psa~~~~-----~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~--------~~~~f~G~S~i~ 217 (540)
T PRK13981 151 PEPAETLAEAGAELLLVPNASPYH-----RGKPDLREAVLRARVRETGLPLVYLNQVGGQ--------DELVFDGASFVL 217 (540)
T ss_pred CcHHHHHHHCCCcEEEEcCCCccc-----CCcHHHHHHHHHHHHHHhCCeEEEEecccCC--------CceEEeCceEEE
Confidence 999999999999999999996531 1235677788999999999999999999943 357899999999
Q ss_pred CCCCccccccCCCCCcEEEEEechhh
Q 022174 244 GPTGEIVAAADDKEEAVLVAQFDLDK 269 (301)
Q Consensus 244 ~p~G~~l~~~~~~~~~~~~~~ld~~~ 269 (301)
+|+|+++.+++.++++++++++|++.
T Consensus 218 dp~G~il~~~~~~~e~~l~~did~~~ 243 (540)
T PRK13981 218 NADGELAARLPAFEEQIAVVDFDRGE 243 (540)
T ss_pred CCCCCEeeecCCCCCcEEEEEEeecC
Confidence 99999999999888999999999954
No 35
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=6.7e-43 Score=339.43 Aligned_cols=260 Identities=25% Similarity=0.380 Sum_probs=216.4
Q ss_pred CcceEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccc--hHHHhhcCCCCCChhHHHHHHH
Q 022174 6 RREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR--EDFFQRAKPYKDHPTILKMQEL 82 (301)
Q Consensus 6 ~~~~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~ 82 (301)
.+.||||++|+++ .+|++.|++++.+++++|+++|||||||||++++||.+.+.. ..+.+.+ .+.++.|+++
T Consensus 10 ~~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~~-----~~~l~~L~~~ 84 (679)
T PRK02628 10 HGFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDAV-----EDALATLVEA 84 (679)
T ss_pred CCcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHhh-----HHHHHHHHHH
Confidence 3579999999998 699999999999999999999999999999999999876532 1222211 2678889999
Q ss_pred HHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCc----------------eeE
Q 022174 83 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF----------------KVF 146 (301)
Q Consensus 83 a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~----------------~~~ 146 (301)
|+++++.|++|++++.++++||++++|+ +|++++.|+|+||++++.|.|.+||.+|+... .+|
T Consensus 85 a~~~~i~ivvG~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~~vf 163 (679)
T PRK02628 85 SADLDPLLVVGAPLRVRHRLYNCAVVIH-RGRILGVVPKSYLPNYREFYEKRWFAPGDGARGETIRLCGQEVPFGTDLLF 163 (679)
T ss_pred HhhcCEEEEEeeEEEECCEEEEEEEEEc-CCEEEEEeccccCCCCCcccccccccCCCCCCCceEeecCeeeccCCceeE
Confidence 9999999999998777789999999996 89999999999999998899999999998511 246
Q ss_pred Ee---CCceEEEEEeccCCcHHH-HHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecC-cc
Q 022174 147 QT---KFAKIGVAICWDQWFPEA-ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNR-IG 221 (301)
Q Consensus 147 ~~---~~~~ig~~IC~D~~~pe~-~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~-~G 221 (301)
++ +++|||+.||+|+|||+. .+.++++|||+|++|++|+.. ......|..+.+.+|.+++++++++|+ .|
T Consensus 164 ~~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~-----~gk~~~r~~l~~~~aar~~~~~v~~n~~~G 238 (679)
T PRK02628 164 EAEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNIT-----VGKADYRRLLVASQSARCLAAYVYAAAGVG 238 (679)
T ss_pred EecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcc-----cCcHHHHHHHHHHHHHHhCcEEEEEecccc
Confidence 54 689999999999999997 688999999999999997641 122344556778888888777777774 55
Q ss_pred ccccccccCCcceeeecceEEECCCCccccccCCC--CCcEEEEEechhhHHhhhhccCcccccC
Q 022174 222 KEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDK--EEAVLVAQFDLDKLKSKRSSWGVFRDRR 284 (301)
Q Consensus 222 ~~~~~~~~g~~~~~~~G~S~i~~p~G~~l~~~~~~--~~~~~~~~ld~~~~~~~r~~~~~~~~~~ 284 (301)
.. +++..|+|.|+|++ +|+++++++.+ +++++++++|++.++..|...+++.+++
T Consensus 239 ~~-------~~~~vf~G~S~I~~-~G~vla~a~~f~~~e~l~~adiDl~~v~~~R~~~~~~~d~~ 295 (679)
T PRK02628 239 ES-------TTDLAWDGQTLIYE-NGELLAESERFPREEQLIVADVDLERLRQERLRNGSFDDNA 295 (679)
T ss_pred cC-------CCCeEEeCeEEEEc-CCeEEEecCCCCCCCcEEEEEEcHHHHHHHHhhcCCcccch
Confidence 32 23589999999998 99999999754 3569999999999999998888887776
No 36
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=5.5e-43 Score=306.82 Aligned_cols=226 Identities=24% Similarity=0.282 Sum_probs=197.1
Q ss_pred eEEEEEeccc-CC------CHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHH
Q 022174 9 VVVSALQFAC-TD------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (301)
Q Consensus 9 ~kia~~Q~~~-~~------~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (301)
+|||++|+++ .+ +.++|++++.+++++|+++++|||||||++++||.. ..++.++.+++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~--------------~~~~~~~~l~~ 66 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQ--------------RDPDALARLAR 66 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCcccc--------------cCHHHHHHHHH
Confidence 5899999998 43 789999999999999999999999999999999751 12378899999
Q ss_pred HHHHhCcEEeeeeeecCC--CeeeEEEEEEcCCCCeecccccccCCCCCCC---------------CcceeecCCCCCce
Q 022174 82 LAKELGVVMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGY---------------QEKFYFNPGDTGFK 144 (301)
Q Consensus 82 ~a~~~~i~iv~G~~~~~~--~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~---------------~e~~~~~~G~~~~~ 144 (301)
+|++++++|++|+.++.+ +++||++++++++|+++.+|+|.||+++.++ .|..+|.+|+. ..
T Consensus 67 ~ak~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~-~~ 145 (270)
T cd07571 67 AARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTG-PQ 145 (270)
T ss_pred HHHhcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCC-CC
Confidence 999999999999987665 4899999999999999999999999987653 36678999985 88
Q ss_pred eEEeCC-ceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCcccc
Q 022174 145 VFQTKF-AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKE 223 (301)
Q Consensus 145 ~~~~~~-~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~ 223 (301)
+|++++ +|+|++||||.+|||+++.++.+|||++++|+++.+. .. .....+|..+.++||+||++||++||++|
T Consensus 146 vf~~~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps~~~~~--~~-~~~~~~~~~~~~arA~en~~~vv~~n~~G-- 220 (270)
T cd07571 146 PLLLGGGVRVGPLICYESIFPELVRDAVRQGADLLVNITNDAWF--GD-SAGPYQHLAMARLRAIETGRPLVRAANTG-- 220 (270)
T ss_pred ccccCCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcCccccc--CC-CcchHHHHHHHHHHHHHhCCCEEEEcCCe--
Confidence 999999 9999999999999999999999999999999984321 11 11345666778999999999999999865
Q ss_pred ccccccCCcceeeecceEEECCCCccccccCCCCCcEEEEEechhh
Q 022174 224 IIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDK 269 (301)
Q Consensus 224 ~~~~~~g~~~~~~~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~ 269 (301)
.|.|++|+|+++++++.++++++++++|++.
T Consensus 221 ---------------~S~ivdp~G~ii~~~~~~~e~~~~~~i~~~~ 251 (270)
T cd07571 221 ---------------ISAVIDPDGRIVARLPLFEAGVLVAEVPLRT 251 (270)
T ss_pred ---------------eeEEECCCCcEEeecCCCcceEEEEEeccCC
Confidence 8999999999999998888999999999876
No 37
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=1.6e-41 Score=328.98 Aligned_cols=258 Identities=19% Similarity=0.208 Sum_probs=202.0
Q ss_pred ceEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHh
Q 022174 8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (301)
Q Consensus 8 ~~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (301)
.||||++|+++ .+|++.|++++.+.|++|+++|||||||||++++||.+.+. +.+........+.+..|.+.+++.
T Consensus 3 ~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl---~~~~~~~~~~~~~L~~La~~a~~~ 79 (700)
T PLN02339 3 LLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDH---FLELDTVTHSWECLAEILVGDLTD 79 (700)
T ss_pred eEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHH---hhChhHHHHHHHHHHHHHhhcccC
Confidence 69999999998 58999999999999999999999999999999999987543 111110000013444454444567
Q ss_pred CcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCC------------------------
Q 022174 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG------------------------ 142 (301)
Q Consensus 87 ~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~------------------------ 142 (301)
++.+++|+++..++++||+++++ .+|++++.|+|+||++++.|.|.++|+||+..
T Consensus 80 ~i~vvvG~p~~~~~~lYN~a~vi-~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpfg 158 (700)
T PLN02339 80 GILCDIGMPVIHGGVRYNCRVFC-LNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFG 158 (700)
T ss_pred CeEEEEeeeEEECCeEEEEEEEE-eCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceeccC
Confidence 99999999877778899999999 58999999999999999889999999998521
Q ss_pred ceeEEeCCceEEEEEeccCCcHHHHHH-HHHCCCcEEEeecccCCCCCCCCCCcHH-HHHHHhhhhHhcCcceEEEecCc
Q 022174 143 FKVFQTKFAKIGVAICWDQWFPEAARA-MVLQGAEILFYPTAIGSEPQDDGLDSRD-HWRRVMQGHAGANVVPLVASNRI 220 (301)
Q Consensus 143 ~~~~~~~~~~ig~~IC~D~~~pe~~~~-~~~~gadlil~p~~~~~~~~~~~~~~~~-~~~~~~~~~A~e~~~~vv~~n~~ 220 (301)
..+|++++.+||+.||+|+|||+..+. ++++|||+|++|++++. +..+.. ++..+....+..+++| ++||++
T Consensus 159 ~~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~-----~~gK~~~R~rai~n~sa~~~~~y-vyaN~~ 232 (700)
T PLN02339 159 DGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHH-----QLRKLNTRLDLIRSATHKCGGVY-LYANQR 232 (700)
T ss_pred cceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChh-----hcCCHHHHHHHHHHHHHHhCCcE-EEEcCC
Confidence 124456678999999999999998885 99999999999998532 111223 3444444455555666 689999
Q ss_pred cccccccccCCcceeeecceEEECCCCccccccCCC---CCcEEEEEechhhHHhhhhccCccccc
Q 022174 221 GKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDK---EEAVLVAQFDLDKLKSKRSSWGVFRDR 283 (301)
Q Consensus 221 G~~~~~~~~g~~~~~~~G~S~i~~p~G~~l~~~~~~---~~~~~~~~ld~~~~~~~r~~~~~~~~~ 283 (301)
|... ++..|.|.|+|. |+|+++++++.+ ++.+++++||++.++..|...+.+++.
T Consensus 233 Ge~~-------~~lvf~G~S~I~-~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~~ 290 (700)
T PLN02339 233 GCDG-------GRLYYDGCACIV-VNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQ 290 (700)
T ss_pred ccCC-------CceEEcCceEEe-CCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhhh
Confidence 8643 247888999996 799999998875 467999999999999999887777553
No 38
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=284.53 Aligned_cols=272 Identities=30% Similarity=0.453 Sum_probs=235.7
Q ss_pred cceEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCC----ChhHHHHHH
Q 022174 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKD----HPTILKMQE 81 (301)
Q Consensus 7 ~~~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~l~~ 81 (301)
.++++|++|... ..+..+|++.+++.+++|.++++++|||||.++.||...+ .+++.++.+++ +++++.+.+
T Consensus 12 ~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~---sf~py~E~i~~~~~~~ps~~~ls~ 88 (298)
T KOG0806|consen 12 PNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTE---SFYPYLEDIPDPGCRDPSRQGLSE 88 (298)
T ss_pred cccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccc---cccchhhhCCCcccCChhHHHhHH
Confidence 468999999999 6689999999999999999999999999999999997632 24455555553 589999999
Q ss_pred HHHHhCcEEeeeeeecC--CCeeeEEEEEEcCCCCeecccccccCCCC--CC---CCcceeecCCCCCceeEEeCCceEE
Q 022174 82 LAKELGVVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDG--PG---YQEKFYFNPGDTGFKVFQTKFAKIG 154 (301)
Q Consensus 82 ~a~~~~i~iv~G~~~~~--~~~~yN~~~~i~~~G~i~~~~~K~~l~~~--~~---~~e~~~~~~G~~~~~~~~~~~~~ig 154 (301)
+|++++|+++.|+++.. +++.||++.+++++|+.+..|||.||+.. +. |.|...|.+|.. +.++++..||||
T Consensus 89 va~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~-f~~~~~~~gkfG 167 (298)
T KOG0806|consen 89 VAERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQ-FTVVDTSYGKFG 167 (298)
T ss_pred HHhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcC-CCcccCCCCceE
Confidence 99999999999988655 47999999999999999999999999765 22 678888999986 889999999999
Q ss_pred EEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcce
Q 022174 155 VAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQI 234 (301)
Q Consensus 155 ~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~ 234 (301)
+.||||++|+|+++.++++||++|+.|++|... . ......||..++++||..|.++|..++..+... ..+
T Consensus 168 i~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~~~-~--l~~~~~hw~~~~~~~a~~n~~~v~~~s~~~~~s-------~~y 237 (298)
T KOG0806|consen 168 IFICFDIRFYDPAMILVKDGADLIVYPTAWNNE-L--LSAVPLHWALLMRARANDNAANVHAPSPARTGS-------GIY 237 (298)
T ss_pred EEEEecccccchHHHHHHcCCcEEEecchHhhh-c--ccccchHHHHHHhCCcccceeeeeccCcCcCCc-------eee
Confidence 999999999999999999999999999998632 1 123467999999999999999999999876532 347
Q ss_pred eeec-ceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHHHHHh
Q 022174 235 TFYG-NSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 293 (301)
Q Consensus 235 ~~~G-~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~~~~ 293 (301)
...| .|.+.+|.|+++...... ++++.+++|.+.+++.|+.+++++++|+++|...+.
T Consensus 238 ~~~gshs~~~~p~gkvl~a~~~~-~e~~~a~~d~~~~~~~rq~~~~~~~r~~d~y~~~~~ 296 (298)
T KOG0806|consen 238 APRGSHSIMVNPTGKVLAAAVEK-EEIIYADVDPSAIASRRQGLPVFRQRRLDLYSLDLF 296 (298)
T ss_pred ecCCcceeecCCcceEeeeccCC-CccccccCCHHHHHHHhcccchhhccchhhhhhhcc
Confidence 7888 999999999999888665 459999999999999999999999999999986653
No 39
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=2e-39 Score=286.39 Aligned_cols=226 Identities=24% Similarity=0.309 Sum_probs=170.8
Q ss_pred EEEEEeccc-CCCHHHHHHHHHHHHHHHHh----CCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHH
Q 022174 10 VVSALQFAC-TDDVSTNLATAERLVRAAHG----KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (301)
Q Consensus 10 kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~----~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (301)
|||++|+++ .+|+++|++++.++|++|.+ +++|||||||++++||...+.. +....++....++.++.++++|+
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~-~~~~~ae~~~~g~~~~~l~~lAk 79 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLE-HIKPYLEPTTSGPSFEWAREVAK 79 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHH-HHHHHHHhcCCCHHHHHHHHHHH
Confidence 699999998 58999999999999999988 8999999999999999754321 11222232223578899999999
Q ss_pred HhCcEEeeeeeecCC---CeeeEEEEEEcCCCCeecccccccCCCCCC---CCcc-eeec------CCCCCce-eEEeCC
Q 022174 85 ELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG---YQEK-FYFN------PGDTGFK-VFQTKF 150 (301)
Q Consensus 85 ~~~i~iv~G~~~~~~---~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~---~~e~-~~~~------~G~~~~~-~~~~~~ 150 (301)
+++++|++|++++.+ +++|||+++|+++|+++++|+|+||++... +.|. .++. +|+.... .+.+.+
T Consensus 80 ~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~~~e~~~~~~~~~~~~~G~~~~~~~~~~~~ 159 (295)
T cd07566 80 KFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWGCEENPGGFQTFPLPFAKDDDFDGGSVDVT 159 (295)
T ss_pred hcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccccCCCCCccccccccccccccccccccCCc
Confidence 999999999987654 489999999999999999999999986421 1122 2232 7764222 233358
Q ss_pred ceEEEEEeccCC---c--H----HHHHHHHHCCCcEEEeecccCCCCCC---------CCCCcHHHHHHHh-hhhH-hcC
Q 022174 151 AKIGVAICWDQW---F--P----EAARAMVLQGAEILFYPTAIGSEPQD---------DGLDSRDHWRRVM-QGHA-GAN 210 (301)
Q Consensus 151 ~~ig~~IC~D~~---~--p----e~~~~~~~~gadlil~p~~~~~~~~~---------~~~~~~~~~~~~~-~~~A-~e~ 210 (301)
+|+|++||||++ | | |++|.++++|||+|++|++|+..... .|.....+|...+ ++|| .||
T Consensus 160 ~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~a~~eN 239 (295)
T cd07566 160 LKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPLRAEPLE 239 (295)
T ss_pred ceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhcccccCCCC
Confidence 899999999996 7 5 99999999999999999998652110 0100123344443 4444 599
Q ss_pred cceEEEecCccccccccccCCcceeeecceEEEC
Q 022174 211 VVPLVASNRIGKEIIETEHGKSQITFYGNSFIAG 244 (301)
Q Consensus 211 ~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~ 244 (301)
++||+.||++|.+. +..|.|.|+|+.
T Consensus 240 ~~~vv~~Nr~G~~~--------~~~f~G~S~i~~ 265 (295)
T cd07566 240 GTQVVFCNRIGTEN--------DTLYAGSSAVIG 265 (295)
T ss_pred ceEEEEEeccCccC--------CceecCccceee
Confidence 99999999999764 478999999985
No 40
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-36 Score=249.13 Aligned_cols=278 Identities=26% Similarity=0.404 Sum_probs=232.1
Q ss_pred CcceEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCc------------cchHHH---hhcCC
Q 022174 6 RREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQA------------QREDFF---QRAKP 69 (301)
Q Consensus 6 ~~~~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~------------~~~~~~---~~~~~ 69 (301)
....||+++|... ..|....++++++.+.+|+++|+.||||||.++.||+... -+.+|. ..+..
T Consensus 15 ~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AIe 94 (337)
T KOG0805|consen 15 SSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAIE 94 (337)
T ss_pred ccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhhc
Confidence 3468999999998 7888999999999999999999999999999999985421 123333 33333
Q ss_pred CCCChhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCC-CCceeEEe
Q 022174 70 YKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGD-TGFKVFQT 148 (301)
Q Consensus 70 ~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~-~~~~~~~~ 148 (301)
.+ ++..+.|+.+|+++++++++|.+|+++..+|.++++++|+|..+++|||..+.. -|+-.+-.|+ .+++++++
T Consensus 95 v~-gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKlmPTa----lERciWGqGDGSTiPV~dT 169 (337)
T KOG0805|consen 95 VP-GPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKLMPTA----LERCIWGQGDGSTIPVYDT 169 (337)
T ss_pred CC-ChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCccccccccccccch----hhheeeccCCCcccceeec
Confidence 33 488999999999999999999999999999999999999999999999997554 3665555443 25899999
Q ss_pred CCceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCcccccc---
Q 022174 149 KFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEII--- 225 (301)
Q Consensus 149 ~~~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~--- 225 (301)
+-||||.+||+|.+.|-....+..+|+++.+.|++ +.+..|...+...|.|.+|+|+.+++-=....
T Consensus 170 ~iGKIG~AICWEN~MPl~R~alY~KgieIycAPT~----------D~r~~w~~sM~~IAlEG~cFvlSA~QF~k~~d~p~ 239 (337)
T KOG0805|consen 170 PIGKIGAAICWENRMPLYRTALYAKGIEIYCAPTA----------DGRKEWQSSMLHIALEGGCFVLSACQFCKRKDFPD 239 (337)
T ss_pred ccchhceeeecccccHHHHHHHHhcCcEEEeccCC----------CCcHHHHHhhhheeecCceEEEEhhhhcccccCCC
Confidence 99999999999999999999999999999999998 46889999999999999999999997533221
Q ss_pred ---------ccccCCcceeeecceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhccCccc-ccChhhHHHHHhhc
Q 022174 226 ---------ETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFR-DRRPELYKVLLTLD 295 (301)
Q Consensus 226 ---------~~~~g~~~~~~~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~-~~~~~~y~~~~~~~ 295 (301)
.++++.+.....|+|.|++|-|.+++.....+|+++++++|++.+..+|-.+++.. +.|||+|++-+.-.
T Consensus 240 ~peyl~~~~~~~k~pD~vv~~GGSviI~PlG~VlagP~~~~EgL~tadldl~dIA~ak~d~DvVGHYsRpDVFqLtVnE~ 319 (337)
T KOG0805|consen 240 HPDYLFTDWYDDKEPDSVVSQGGSVIISPLGQVLAGPNFESEGLITADLDLGDIARAKLDFDVVGHYSRPDVFQLTVNEH 319 (337)
T ss_pred CchhhcccchhccCCCcceecCCcEEEccccceecCCCcCccceEEEeccchhhhhhccccccccccCCCceEEEEeccC
Confidence 12345566788999999999999999877788999999999999999887776553 38999998766544
Q ss_pred CCC
Q 022174 296 GSN 298 (301)
Q Consensus 296 ~~~ 298 (301)
+++
T Consensus 320 ~~~ 322 (337)
T KOG0805|consen 320 PRK 322 (337)
T ss_pred CCC
Confidence 443
No 41
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=100.00 E-value=2.1e-36 Score=286.90 Aligned_cols=227 Identities=22% Similarity=0.221 Sum_probs=187.3
Q ss_pred cceEEEEEeccc-C------CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHH
Q 022174 7 REVVVSALQFAC-T------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM 79 (301)
Q Consensus 7 ~~~kia~~Q~~~-~------~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (301)
+++|||++|.++ . ++.++|++++.+.++++ ++++|+|||||.+++++. .+ ..++..+.+
T Consensus 218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~-~~------------~~~~~~~~l 283 (505)
T PRK00302 218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLL-ED------------LPQAFLKAL 283 (505)
T ss_pred CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccccccc-cc------------ccHHHHHHH
Confidence 469999999998 3 35778999999999854 568999999999987752 11 012566789
Q ss_pred HHHHHHhCcEEeeeeeecCC---C-eeeEEEEEEcCCCCeecccccccCCCCCCCCc---------------ceeecCCC
Q 022174 80 QELAKELGVVMPVSFFEEAN---N-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNPGD 140 (301)
Q Consensus 80 ~~~a~~~~i~iv~G~~~~~~---~-~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e---------------~~~~~~G~ 140 (301)
+++|+++++.+++|..++.+ + ++||+++++++ |+++.+|+|+||+|+++|.. ...|.+|+
T Consensus 284 ~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~ 362 (505)
T PRK00302 284 DDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGP 362 (505)
T ss_pred HHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCC
Confidence 99999999999999876542 3 69999999988 88999999999999887521 12578998
Q ss_pred CCceeEEeCCceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCc
Q 022174 141 TGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRI 220 (301)
Q Consensus 141 ~~~~~~~~~~~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~ 220 (301)
...++++++++|+|++||||..|||..|.+.++|+|++++|++... +... ....+|..+.+.||+||++|+++||++
T Consensus 363 ~~~~v~~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~snd~W--f~~~-~~~~qh~~~~~~RAiEng~~vvra~n~ 439 (505)
T PRK00302 363 YVQPPLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNISNDAW--FGDS-IGPYQHFQMARMRALELGRPLIRATNT 439 (505)
T ss_pred CCCCCcccCCceEEEEEeehhcChHHHHhhccCCCCEEEEccchhh--cCCC-CchHHHHHHHHHHHHHhCCceEEecCc
Confidence 4478999999999999999999999999999999999999999321 1111 123456677899999999999999976
Q ss_pred cccccccccCCcceeeecceEEECCCCccccccCCCCCcEEEEEechh
Q 022174 221 GKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLD 268 (301)
Q Consensus 221 G~~~~~~~~g~~~~~~~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~ 268 (301)
| .|.++||+|+++++++.++++++++++++.
T Consensus 440 G-----------------~Saiidp~G~i~~~~~~~~~~~l~~~i~~~ 470 (505)
T PRK00302 440 G-----------------ITAVIDPLGRIIAQLPQFTEGVLDGTVPPT 470 (505)
T ss_pred e-----------------eeEEECCCCCEeeecCCCceeEEEEEeccC
Confidence 5 899999999999999988999999999885
No 42
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=100.00 E-value=5.2e-36 Score=275.92 Aligned_cols=208 Identities=21% Similarity=0.229 Sum_probs=173.5
Q ss_pred cceEEEEEeccc-CC------CHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHH
Q 022174 7 REVVVSALQFAC-TD------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM 79 (301)
Q Consensus 7 ~~~kia~~Q~~~-~~------~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (301)
+++|||++|.++ .. +.++|++++.+++++|.+ ++|+|||||.++++|.... .....+.+
T Consensus 158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~-------------~~~~~~~l 223 (391)
T TIGR00546 158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENS-------------PQKLADRL 223 (391)
T ss_pred CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhC-------------cHHHHHHH
Confidence 479999999998 32 468899999999998877 8999999999999863211 11367889
Q ss_pred HHHHHHhCcEEeeeeeecCCC---eeeEEEEEEcCCCCeecccccccCCCCCCCCc----------------ceeecCCC
Q 022174 80 QELAKELGVVMPVSFFEEANN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE----------------KFYFNPGD 140 (301)
Q Consensus 80 ~~~a~~~~i~iv~G~~~~~~~---~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e----------------~~~~~~G~ 140 (301)
+++|+++++.+++|..+.+++ ++||++++++++|+++.+|+|+||+|+++|.. ..+|.+|+
T Consensus 224 ~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~ 303 (391)
T TIGR00546 224 KLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGP 303 (391)
T ss_pred HHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCC
Confidence 999999999999998765432 79999999999999999999999999887532 24678997
Q ss_pred CCceeEEeCCceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCc
Q 022174 141 TGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRI 220 (301)
Q Consensus 141 ~~~~~~~~~~~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~ 220 (301)
+ ..+++++++|+|++||||..||++.|.++++|||++++|++.+. +... ....+|..+.+.||+||++|+++||++
T Consensus 304 ~-~~~~~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~snd~w--f~~s-~~~~qh~~~~~~RAiEn~~~vvra~n~ 379 (391)
T TIGR00546 304 G-PQVLKLPGGKIAPLICYESIFPDLVRASARQGAELLVNLTNDAW--FGDS-SGPWQHFALARFRAIENGRPLVRATNT 379 (391)
T ss_pred C-CCCCcCCCceeeeeEEeehhchHHHHhhccCCCCEEEEecchhh--cCCC-CChHHHHHHHHHHHHHhCCcEEEecCC
Confidence 5 78999999999999999999999999999999999999999432 1111 124566778899999999999999986
Q ss_pred cccccccccCCcceeeecceEEECCCCcc
Q 022174 221 GKEIIETEHGKSQITFYGNSFIAGPTGEI 249 (301)
Q Consensus 221 G~~~~~~~~g~~~~~~~G~S~i~~p~G~~ 249 (301)
| .|+++||+|++
T Consensus 380 G-----------------~S~vidp~G~i 391 (391)
T TIGR00546 380 G-----------------ISAVIDPRGRT 391 (391)
T ss_pred c-----------------eeEEECCCCCC
Confidence 6 99999999985
No 43
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=100.00 E-value=2e-34 Score=239.18 Aligned_cols=173 Identities=36% Similarity=0.574 Sum_probs=148.9
Q ss_pred EEEEEeccc---CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCccc----CCccchHHHhhcCCCCCChhHHHHHHH
Q 022174 10 VVSALQFAC---TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYF----CQAQREDFFQRAKPYKDHPTILKMQEL 82 (301)
Q Consensus 10 kia~~Q~~~---~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (301)
|||++|+++ ..+.+.|++++.+++++|.++++|||||||++++||. ..+...+......+.. +++++.|.++
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 79 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLD-GPYLERLAEL 79 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHST-SHHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccc-cHHHHHHHHH
Confidence 799999994 6899999999999999999999999999999999982 2222233333333333 4899999999
Q ss_pred HHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCC-cceeecCCCCCceeEEeC-----CceEEEE
Q 022174 83 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-EKFYFNPGDTGFKVFQTK-----FAKIGVA 156 (301)
Q Consensus 83 a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~-e~~~~~~G~~~~~~~~~~-----~~~ig~~ 156 (301)
|+++++++++|.++++++++||++++++++|+++.+|+|.||+|+++|. |..+|.+|.....+++++ ++|||++
T Consensus 80 a~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~~~~~~~~~~~~g~~ig~~ 159 (186)
T PF00795_consen 80 AKENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPFPVFETPVFDFGGGRIGVL 159 (186)
T ss_dssp HHHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSESEEEEETETEETTEEEEEE
T ss_pred HHhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeeccceeeeeecceeeeccceEEEE
Confidence 9999999999999998899999999999999999999999999999988 888999985556676664 7999999
Q ss_pred EeccCCcHHHHHHHHHCCCcEEEeecc
Q 022174 157 ICWDQWFPEAARAMVLQGAEILFYPTA 183 (301)
Q Consensus 157 IC~D~~~pe~~~~~~~~gadlil~p~~ 183 (301)
||||.+||++++.+.++|||++++|+|
T Consensus 160 ICyd~~fp~~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 160 ICYDLRFPELVRELAKQGADILINPSA 186 (186)
T ss_dssp EGGGGGSHHHHHHHHHTTESEEEEEE-
T ss_pred EEcccCChHHHHHHHHCCCCEEEeCCC
Confidence 999999999999999999999999986
No 44
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.98 E-value=7.7e-31 Score=216.29 Aligned_cols=280 Identities=29% Similarity=0.459 Sum_probs=238.2
Q ss_pred ceEEEEEeccc-C-------CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcc-cCCccchHHHhhcCCCCCChhHHH
Q 022174 8 EVVVSALQFAC-T-------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYY-FCQAQREDFFQRAKPYKDHPTILK 78 (301)
Q Consensus 8 ~~kia~~Q~~~-~-------~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (301)
-++|+++|-.+ . +.....-+++..+|+.|...|+++|+|-|.+..+| ++...+-.|.+.+++.+.++..+.
T Consensus 73 ~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~f 152 (387)
T KOG0808|consen 73 VVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTKF 152 (387)
T ss_pred EEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHHH
Confidence 48999999887 1 23455667788888888889999999999997766 444444558888888888899999
Q ss_pred HHHHHHHhCcEEeeeeeecC---CCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEE
Q 022174 79 MQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155 (301)
Q Consensus 79 l~~~a~~~~i~iv~G~~~~~---~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~ 155 (301)
++++|+++++.|+..+.|++ +..++|++++|+.+|.+++++||.|.|..+.|.|..|+-.|+.+-++|++.+|||++
T Consensus 153 lqklakkhdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lghpvfet~fgriav 232 (387)
T KOG0808|consen 153 LQKLAKKHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLGHPVFETVFGRIAV 232 (387)
T ss_pred HHHHHhhCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCCCceeeeecceEEE
Confidence 99999999999999998775 568999999999999999999999999999999999999998888999999999999
Q ss_pred EEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccc----cccCC
Q 022174 156 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIE----TEHGK 231 (301)
Q Consensus 156 ~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~----~~~g~ 231 (301)
-|||--.+|.-+..+..+||++|++|++.-- ..+...|-.-.+..|+.|++++...|++|.+-.. ..+|+
T Consensus 233 nicygrhhplnwlmy~lngaeiifnpsatvg------alseplwpiearnaaianh~ft~~inrvgtevfpneftsgdgk 306 (387)
T KOG0808|consen 233 NICYGRHHPLNWLMYGLNGAEIIFNPSATVG------ALSEPLWPIEARNAAIANHYFTGSINRVGTEVFPNEFTSGDGK 306 (387)
T ss_pred EeeccCCCchhhhhhhccCceEEECCccccc------cccCccCchhhhhhhhhhceEEEeecccccccCCCcccCCCCC
Confidence 9999999999999999999999999999421 2345567777888899999999999999986421 01232
Q ss_pred c----ceeeecceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHHHHHh
Q 022174 232 S----QITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 293 (301)
Q Consensus 232 ~----~~~~~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~~~~ 293 (301)
. =-.|+|.|.+..|++..--.+....++++++++|++..++....|++--..|-++|..++.
T Consensus 307 pah~dfghfygssy~aapd~srtp~lsr~rdgllia~ldlnlcrq~kd~wgfrmt~ryemya~~la 372 (387)
T KOG0808|consen 307 PAHNDFGHFYGSSYFAAPDASRTPSLSRYRDGLLIADLDLNLCRQYKDKWGFRMTARYEMYADLLA 372 (387)
T ss_pred cccccccccccceeeecCCCCCCccccccccceEEeecchHHHHHhhhhhcceehhhHHHHHHHHH
Confidence 1 1369999999999999888888889999999999999999999999877788899977765
No 45
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.97 E-value=4.5e-30 Score=236.56 Aligned_cols=196 Identities=14% Similarity=0.090 Sum_probs=157.0
Q ss_pred eEEEEEecccCC-------CHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHH
Q 022174 9 VVVSALQFACTD-------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (301)
Q Consensus 9 ~kia~~Q~~~~~-------~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (301)
++|+++|.++.. ..+++++++.+++++|.++++|+|||||.+++.+... ....++.+++
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~--------------~~~~~~~l~~ 260 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNN--------------SPILLDKLKE 260 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhh--------------CHHHHHHHHH
Confidence 499999999832 2468899999999999888999999999998764211 1135666776
Q ss_pred HHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCC----------------CcceeecCCCCCcee
Q 022174 82 LAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY----------------QEKFYFNPGDTGFKV 145 (301)
Q Consensus 82 ~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~----------------~e~~~~~~G~~~~~~ 145 (301)
.+ .++.+++|....+++++||++++++ +|+ +..|+|+||+|+++| .|...|++|+. ..+
T Consensus 261 ~~--~~~~ii~G~~~~~~~~~yNS~~vi~-~G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~-~~~ 335 (418)
T PRK12291 261 LS--HKITIITGALRVEDGHIYNSTYIFS-KGN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASK-FSD 335 (418)
T ss_pred hc--cCCcEEEeeeeccCCceEEEEEEEC-CCC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCC-Ccc
Confidence 64 4789999988766678999999996 487 679999999998764 24457899975 788
Q ss_pred EEeCCceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCcccccc
Q 022174 146 FQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEII 225 (301)
Q Consensus 146 ~~~~~~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~ 225 (301)
+++++.|+|++||||..||+..+ +|+|++++++|.... ..+ ....+|..+++.||+|+|+|+++++++|
T Consensus 336 ~~~~g~~ig~lICYE~~Fpel~r----~ga~~Lv~iSNdaWf--g~s-~~p~~~~~~~r~RAiE~g~pvvratNtG---- 404 (418)
T PRK12291 336 FTLDGVKFRNAICYEATSEELYE----GNPKIVIAISNNAWF--VPS-IEPTLQKLLLKYYARKYGKTIYHSANGS---- 404 (418)
T ss_pred eeeCCeEEEEEEeeeecchHhhc----cCCCEEEEecccccC--CCC-hhHHHHHHHHHHHHHHhCCcEEEEcCCc----
Confidence 99999999999999999999987 899999999994331 111 1234667778899999999999999876
Q ss_pred ccccCCcceeeecceEEECCCC
Q 022174 226 ETEHGKSQITFYGNSFIAGPTG 247 (301)
Q Consensus 226 ~~~~g~~~~~~~G~S~i~~p~G 247 (301)
.|+++||+-
T Consensus 405 -------------iSavIdp~~ 413 (418)
T PRK12291 405 -------------PSYIITPKL 413 (418)
T ss_pred -------------eeEEECcch
Confidence 899999864
No 46
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=3e-28 Score=228.51 Aligned_cols=228 Identities=21% Similarity=0.202 Sum_probs=171.4
Q ss_pred cceEEEEEecccC----CCHHHHHHHHHH---HHHHHH--hCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHH
Q 022174 7 REVVVSALQFACT----DDVSTNLATAER---LVRAAH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL 77 (301)
Q Consensus 7 ~~~kia~~Q~~~~----~~~~~n~~~~~~---~i~~A~--~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 77 (301)
..++|+++|.++. .+.++-...+.. ....+. .+++|+|||||.+++-... + ..+...
T Consensus 226 ~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~~-~-------------~~~~~~ 291 (518)
T COG0815 226 PTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDLT-R-------------HPDALA 291 (518)
T ss_pred CceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccchh-h-------------cchHHH
Confidence 4599999999983 333333333333 333333 3789999999999873211 0 012356
Q ss_pred HHHHHHHHhCcEEeeeeeec--CCC--eeeEEEEEEcCCCCeecccccccCCCCCCCCc---------------ceeecC
Q 022174 78 KMQELAKELGVVMPVSFFEE--ANN--AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNP 138 (301)
Q Consensus 78 ~l~~~a~~~~i~iv~G~~~~--~~~--~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e---------------~~~~~~ 138 (301)
.+.+.+.+.++.+++|..+. .++ .+|||+++++++|+++.+|+|+||.||+||-. ...|.+
T Consensus 292 ~~~~~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f~~ 371 (518)
T COG0815 292 RLAEALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDFSR 371 (518)
T ss_pred HHHHHHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccccccC
Confidence 67888888889999994332 233 48999999999999999999999999999842 123566
Q ss_pred CCCCceeEEeC-CceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEe
Q 022174 139 GDTGFKVFQTK-FAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVAS 217 (301)
Q Consensus 139 G~~~~~~~~~~-~~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~ 217 (301)
|+. ..++.++ +.|++.+||||..||+..|...++|+|+++++||-.+. .... ...++-.+.+.||+|+++|++++
T Consensus 372 G~~-~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~qga~~Lin~SNDAWf--~~s~-~p~QH~~~a~~RAiE~grp~iRA 447 (518)
T COG0815 372 GPG-PQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSNDAWF--GGSW-GPYQHFQQARVRAVELGRPLVRA 447 (518)
T ss_pred CCC-CcceecCCCceeeceeeehhhchHHHHHhhcCCCcEEEEccccccc--CCCc-chHHHHHHHHHHHHhcCCcEEEE
Confidence 875 4566665 45799999999999999999999999999999994322 1111 22344455789999999999999
Q ss_pred cCccccccccccCCcceeeecceEEECCCCccccccCCCCCcEEEEEechhh
Q 022174 218 NRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDK 269 (301)
Q Consensus 218 n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~ 269 (301)
+++| .|.++||+|+++...+.++.+++..++.+..
T Consensus 448 tNtG-----------------iSavIdp~Gri~~~l~~~~~~~l~~~v~~~~ 482 (518)
T COG0815 448 TNTG-----------------ISAVIDPRGRILAQLPYFTRGVLDATVPLKT 482 (518)
T ss_pred cCCc-----------------ceEEECCCCCEEeecCCCCcceeeeeecccC
Confidence 9876 9999999999999999999999999887764
No 47
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.92 E-value=4.1e-24 Score=194.42 Aligned_cols=188 Identities=16% Similarity=0.065 Sum_probs=138.3
Q ss_pred eEEEEEecccC--CC---HHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHH
Q 022174 9 VVVSALQFACT--DD---VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (301)
Q Consensus 9 ~kia~~Q~~~~--~~---~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (301)
-++-.+++++. .. -.+..+.+.+.+++|.++++|+|||||.++++|.... .+.+.+.+
T Consensus 186 ~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~-----------------~~~~~~~l 248 (388)
T PRK13825 186 AGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTT-----------------ERLWRESL 248 (388)
T ss_pred CCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccccc-----------------cHHHHHHH
Confidence 46667777762 11 1244446667777788889999999999999874210 01235556
Q ss_pred HHhCcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCC-------cceeecCCCCCceeEEeCCceEEEE
Q 022174 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-------EKFYFNPGDTGFKVFQTKFAKIGVA 156 (301)
Q Consensus 84 ~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~-------e~~~~~~G~~~~~~~~~~~~~ig~~ 156 (301)
+++++.|++|..+++++++||++++++++|.+ ..|+|+||.++++|. |..++.+|....+++++++.|+|++
T Consensus 249 ~~~~i~II~G~~~~~~~~~yNsa~v~~~~G~~-~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~l 327 (388)
T PRK13825 249 RGSDVTVIAGAAVVDPGGYDNVLVAISAGGGR-ILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAPL 327 (388)
T ss_pred HhCCCeEEEEeeecCCCCceEEEEEEeCCCCe-eeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEEE
Confidence 88899999998887778899999999998864 489999998887643 5566777742236889999999999
Q ss_pred EeccCCc--HHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecC
Q 022174 157 ICWDQWF--PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNR 219 (301)
Q Consensus 157 IC~D~~~--pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~ 219 (301)
||||..| |+..+ ..+|+|+|++|+|... +..+ ....+...+.+.||+|++.|++++.+
T Consensus 328 ICYE~~F~~pel~~--~~~GadlLv~~SNd~W--f~~s-~~p~~q~~~~~~rA~e~g~plvrA~N 387 (388)
T PRK13825 328 ICYEQLLVWPVLQS--MLHSPDVIVAVGNGWW--TKGT-SIVAIQRASAEAWARLFGVPLVRAFN 387 (388)
T ss_pred EeeeecCcHHHHHh--hccCCCEEEEecCchh--cCCC-cHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 9999988 55533 3789999999999321 1111 11234557789999999999999875
No 48
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=99.85 E-value=1.7e-21 Score=173.99 Aligned_cols=252 Identities=22% Similarity=0.285 Sum_probs=197.1
Q ss_pred CCcceEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHH
Q 022174 5 KRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (301)
Q Consensus 5 ~~~~~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (301)
|..+++||..++|. -.|++.|.++|.+.|++|++.||.+=+=||+=++||.+.+- |++.-.- -+..+-|+++-
T Consensus 1 m~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DH---f~E~Dt~---~HswE~l~~l~ 74 (706)
T KOG2303|consen 1 MGRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDH---FLESDTL---LHSWEMLAELV 74 (706)
T ss_pred CCceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHh---hccchHH---HHHHHHHHHHH
Confidence 45689999999999 57999999999999999999999999999999999988651 2111000 12234444443
Q ss_pred H---HhCcEEeeeeeecCCCeeeEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCC------------------
Q 022174 84 K---ELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG------------------ 142 (301)
Q Consensus 84 ~---~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~------------------ 142 (301)
. -.++.+.+|++..+++-.||+.+++ -+|+|+....|..|.+.+.|.|.+||+|+...
T Consensus 75 ~~~~~~~il~diGmPv~hr~~ryNCrv~~-~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q 153 (706)
T KOG2303|consen 75 ESPVTQDILCDIGMPVMHRNVRYNCRVLF-LNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQ 153 (706)
T ss_pred cCCCCCCeeEecCCchhhhhhhhccceee-cCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCC
Confidence 3 2478888999999999999999988 79999999999999999999999999887642
Q ss_pred ------ceeEEeCCceEEEEEeccCCcHH-HHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEE
Q 022174 143 ------FKVFQTKFAKIGVAICWDQWFPE-AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLV 215 (301)
Q Consensus 143 ------~~~~~~~~~~ig~~IC~D~~~pe-~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv 215 (301)
-.++.+.+..||.-||.|+|.|. .--.++..|++++.+.+.+... ..+......+...-..+.|--.+
T Consensus 154 ~tVPfGdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~-----LrK~~~r~~li~~at~k~GGvYl 228 (706)
T KOG2303|consen 154 ETVPFGDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHE-----LRKLNTRVDLILNATSKCGGVYL 228 (706)
T ss_pred eeecccceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHH-----HhhhhhhhHHHhcchhhcceEEE
Confidence 02445555679999999999987 4667888999999998874321 12223344455555666776677
Q ss_pred EecCccccccccccCCcceeeecceEEECCCCccccccCCC---CCcEEEEEechhhHHhhhhc
Q 022174 216 ASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDK---EEAVLVAQFDLDKLKSKRSS 276 (301)
Q Consensus 216 ~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~~l~~~~~~---~~~~~~~~ld~~~~~~~r~~ 276 (301)
++|+-|..+ ++.-|+|.|+|. -+|.++++...+ .-+++.+.+|+++++..|..
T Consensus 229 yaNqrGCDG-------~RlYydGca~Ia-~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~ 284 (706)
T KOG2303|consen 229 YANQRGCDG-------DRLYYDGCAMIA-MNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRAS 284 (706)
T ss_pred eeccCCCCC-------ceeEecchhhee-ecceeeeecccccccceEEEEEEecHHHHHHHHhh
Confidence 999999765 358899999998 499999998744 46889999999999999843
No 49
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=84.28 E-value=7.2 Score=34.47 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=42.3
Q ss_pred HHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee-cCCC-eeeEEEEEEcC
Q 022174 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAIIDA 111 (301)
Q Consensus 34 ~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~~-~~yN~~~~i~~ 111 (301)
+....+|+|+|+.|-.+.... ...+...++..|.+++++++..... .+++ .++=.+.+++|
T Consensus 163 r~la~~GAdill~ps~~~~~~-----------------~~~w~~~~~aRA~En~~~vv~aN~~G~~~~~~~~G~S~ivdP 225 (291)
T cd07565 163 RECAYKGAELIIRIQGYMYPA-----------------KDQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIVNF 225 (291)
T ss_pred HHHHHCCCeEEEECCcCCCCc-----------------chHHHHHHHHHHHhcCcEEEEecccccCCCceeeeeeEEECC
Confidence 334457999999997442210 0134556778888999999854321 1222 34456788899
Q ss_pred CCCeec
Q 022174 112 DGSDLG 117 (301)
Q Consensus 112 ~G~i~~ 117 (301)
+|+++.
T Consensus 226 ~G~ila 231 (291)
T cd07565 226 DGRTLG 231 (291)
T ss_pred CCCEEE
Confidence 999863
No 50
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=78.87 E-value=12 Score=32.14 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=39.9
Q ss_pred HHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeee-ecCCCe-eeEEEEEEcC
Q 022174 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANNA-HYNSIAIIDA 111 (301)
Q Consensus 34 ~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~~~~-~yN~~~~i~~ 111 (301)
+....+|+|+|+.|=.+..... .... ..+...++..|.+++++++.... -..++. ..=.+.+++|
T Consensus 150 r~l~~~gadlil~p~~~~~~~~--~~~~-----------~~~~~~~~~rA~e~~~~vv~~n~~g~~~~~~~~G~S~i~~p 216 (261)
T cd07585 150 RATALLGAEILFAPHATPGTTS--PKGR-----------EWWMRWLPARAYDNGVFVAACNGVGRDGGEVFPGGAMILDP 216 (261)
T ss_pred HHHHHCCCCEEEECCccCCCCC--cchH-----------HHHHHHhHHHHhhcCeEEEEecccccCCCceecceEEEECC
Confidence 4445679999999954322110 0000 12334566778889999885421 111222 2234678899
Q ss_pred CCCeec
Q 022174 112 DGSDLG 117 (301)
Q Consensus 112 ~G~i~~ 117 (301)
+|+++.
T Consensus 217 ~G~v~~ 222 (261)
T cd07585 217 YGRVLA 222 (261)
T ss_pred CCCEEe
Confidence 999864
No 51
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=78.65 E-value=14 Score=31.51 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=39.4
Q ss_pred HHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeee-ecCCC-eeeEEEEEEcCC
Q 022174 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANN-AHYNSIAIIDAD 112 (301)
Q Consensus 35 ~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~~~-~~yN~~~~i~~~ 112 (301)
....+|||+|+.|=.....+. ..+...++..|.+++++++.... -..++ .++=.+.+++|+
T Consensus 153 ~~~~~gadii~~p~~~~~~~~-----------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~i~~p~ 215 (254)
T cd07576 153 ALALAGADLVLVPTALMEPYG-----------------FVARTLVPARAFENQIFVAYANRCGAEDGLTYVGLSSIAGPD 215 (254)
T ss_pred HHHHCCCCEEEECCccCCCcc-----------------hhhhhhhHHHHHhCCCEEEEEcccCCCCCceeeeeeEEECCC
Confidence 334579999999864432211 12234456778899999886532 11222 233346778999
Q ss_pred CCeec
Q 022174 113 GSDLG 117 (301)
Q Consensus 113 G~i~~ 117 (301)
|+++.
T Consensus 216 G~il~ 220 (254)
T cd07576 216 GTVLA 220 (254)
T ss_pred CCEeE
Confidence 99763
No 52
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=77.67 E-value=9.8 Score=33.86 Aligned_cols=68 Identities=15% Similarity=0.053 Sum_probs=42.5
Q ss_pred HHHHhC-CCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCC
Q 022174 34 RAAHGK-GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDAD 112 (301)
Q Consensus 34 ~~A~~~-~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~ 112 (301)
+....+ |+|+++.|=.+..... ...+...++..|.++++++++-..... ...+-.+.+++|.
T Consensus 190 r~la~~~GAdlil~paaw~~~~~----------------~~~w~~l~~arA~eN~~~vi~~N~~g~-~~~~G~S~iv~P~ 252 (299)
T cd07567 190 LELVKKLGVDDIVFPTAWFSELP----------------FLTAVQIQQAWAYANGVNLLAANYNNP-SAGMTGSGIYAGR 252 (299)
T ss_pred HHHHHhCCCCEEEECCccCCCCC----------------chhHHHHHHHHHHHcCceEEEecCCCC-cCccccceEEcCC
Confidence 333455 9999999954422110 013455667889999999987643211 1223456788999
Q ss_pred -CCeecc
Q 022174 113 -GSDLGL 118 (301)
Q Consensus 113 -G~i~~~ 118 (301)
|+++..
T Consensus 253 ~G~v~a~ 259 (299)
T cd07567 253 SGALVYH 259 (299)
T ss_pred CCcEEEE
Confidence 998754
No 53
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=77.40 E-value=15 Score=31.74 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=40.3
Q ss_pred HHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeee-eeecCCCeee-EEEEEEcC
Q 022174 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS-FFEEANNAHY-NSIAIIDA 111 (301)
Q Consensus 34 ~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G-~~~~~~~~~y-N~~~~i~~ 111 (301)
+....+|+|+|+.|=.+......... ....+...++..|.+++++++.. ..-.+++..| =.+.+++|
T Consensus 154 r~~~~~ga~li~~ps~~~~~~~~~~~-----------~~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p 222 (268)
T cd07580 154 RLLALQGADIVCVPTNWVPMPRPPEG-----------GPPMANILAMAAAHSNGLFIACADRVGTERGQPFIGQSLIVGP 222 (268)
T ss_pred HHHHHcCCCEEEEcCcccccCCcccc-----------cCcHHHHhhHHHHhhCCcEEEEEeeeeeccCceEeeeeEEECC
Confidence 33456799999999765322110000 00122233455677899999753 3222233333 35688999
Q ss_pred CCCee
Q 022174 112 DGSDL 116 (301)
Q Consensus 112 ~G~i~ 116 (301)
+|+++
T Consensus 223 ~G~~~ 227 (268)
T cd07580 223 DGWPL 227 (268)
T ss_pred CCCee
Confidence 99975
No 54
>PLN02798 nitrilase
Probab=77.20 E-value=10 Score=33.28 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=43.2
Q ss_pred HHHHHHHCCCcEEEeecccCCCCCCCC-----CCc-HHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecc
Q 022174 166 AARAMVLQGAEILFYPTAIGSEPQDDG-----LDS-RDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGN 239 (301)
Q Consensus 166 ~~~~~~~~gadlil~p~~~~~~~~~~~-----~~~-~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~ 239 (301)
+.+.+..+|+|+|+.|-.+....+... .+. ...+....+..|.+++++++.-...-... ++ -..+-.
T Consensus 34 ~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~----~~---~~~yNs 106 (286)
T PLN02798 34 LAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGP----DD---SHLYNT 106 (286)
T ss_pred HHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEEeeeEcccC----CC---CceEEE
Confidence 456667789999999997432122111 001 11234445667889998886421110000 01 123446
Q ss_pred eEEECCCCcccc
Q 022174 240 SFIAGPTGEIVA 251 (301)
Q Consensus 240 S~i~~p~G~~l~ 251 (301)
+.+++|+|+++.
T Consensus 107 ~~vi~~~G~i~~ 118 (286)
T PLN02798 107 HVLIDDSGEIRS 118 (286)
T ss_pred EEEECCCCCEEE
Confidence 677888998764
No 55
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=75.47 E-value=19 Score=30.90 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=39.2
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeee-eecCCCeeeE-EEEEEc
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF-FEEANNAHYN-SIAIID 110 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~-~~~~~~~~yN-~~~~i~ 110 (301)
.+.+..+|+|+|+.|=.+... . ...+....+..|.+++++++... .-..++..|+ .+.+++
T Consensus 155 ~r~~~~~gadll~~ps~~~~~----~-------------~~~~~~~~~~rA~En~~~vv~~n~~g~~~~~~~~G~S~ii~ 217 (258)
T cd07584 155 ARILTLKGAEVIFCPSAWREQ----D-------------ADIWDINLPARALENTVFVAAVNRVGNEGDLVLFGKSKILN 217 (258)
T ss_pred HHHHHHCCCcEEEECCccCCC----C-------------chHHHHHHHHHHHhCCcEEEEECccccCCCceecceeEEEC
Confidence 445556799999999532110 0 01222344566788999998532 1122233333 567889
Q ss_pred CCCCee
Q 022174 111 ADGSDL 116 (301)
Q Consensus 111 ~~G~i~ 116 (301)
|+|+++
T Consensus 218 p~G~il 223 (258)
T cd07584 218 PRGQVL 223 (258)
T ss_pred CCCcee
Confidence 999986
No 56
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=74.87 E-value=18 Score=31.08 Aligned_cols=67 Identities=15% Similarity=-0.011 Sum_probs=40.2
Q ss_pred HHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee-cCCCee-eEEEEEEcCCC
Q 022174 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANNAH-YNSIAIIDADG 113 (301)
Q Consensus 36 A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~~~~-yN~~~~i~~~G 113 (301)
...+|+|+|+.|=.+.. .... ...+...++..|.+++++++..... ..++.. .=.+.+++|+|
T Consensus 158 ~~~~ga~ll~~ps~~~~--~~~~-------------~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~G~S~ii~p~G 222 (261)
T cd07570 158 LALAGADLILNLSASPF--HLGK-------------QDYRRELVSSRSARTGLPYVYVNQVGGQDDLVFDGGSFIADNDG 222 (261)
T ss_pred HHHcCCcEEEEeCCCcc--ccCc-------------HHHHHHHHHHHHHHhCCcEEEEeCCCCCceEEEECceEEEcCCC
Confidence 34579999999964311 1000 0123345778889999999865431 122222 23368889999
Q ss_pred Ceec
Q 022174 114 SDLG 117 (301)
Q Consensus 114 ~i~~ 117 (301)
+++.
T Consensus 223 ~vl~ 226 (261)
T cd07570 223 ELLA 226 (261)
T ss_pred CEEE
Confidence 9874
No 57
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=73.52 E-value=16 Score=31.49 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=40.2
Q ss_pred HHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee-cCC-Ceee-EEEEE
Q 022174 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EAN-NAHY-NSIAI 108 (301)
Q Consensus 32 ~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~-~~~y-N~~~~ 108 (301)
..+.+..+|+|+|+.|-.+.... . ...+...++..|.+++++++..... .++ +..+ =.+.+
T Consensus 161 ~~r~~~~~gadli~~p~~~~~~~--~--------------~~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i 224 (265)
T cd07572 161 LARALARQGADILTVPAAFTMTT--G--------------PAHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMI 224 (265)
T ss_pred HHHHHHHCCCCEEEECCCCCCCc--c--------------hHHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEE
Confidence 44555677999999995332110 0 0123334566788899998865321 111 1222 24678
Q ss_pred EcCCCCee
Q 022174 109 IDADGSDL 116 (301)
Q Consensus 109 i~~~G~i~ 116 (301)
++|+|+++
T Consensus 225 ~~p~G~il 232 (265)
T cd07572 225 VDPWGEVL 232 (265)
T ss_pred ECCCcHHH
Confidence 89999876
No 58
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=73.47 E-value=18 Score=31.29 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=42.0
Q ss_pred HHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee-cCCC-eeeEEEEEEcCCC
Q 022174 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAIIDADG 113 (301)
Q Consensus 36 A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~~-~~yN~~~~i~~~G 113 (301)
...+|+|+|+.|=.+......... .....+...++..|.+++++++..... ..++ .++-.+.+++|+|
T Consensus 155 ~~~~ga~lil~ps~~~~~~~~~~~----------~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~G~S~ii~p~G 224 (269)
T cd07586 155 LALDGADVIFIPANSPARGVGGDF----------DNEENWETLLKFYAMMNGVYVVFANRVGVEDGVYFWGGSRVVDPDG 224 (269)
T ss_pred HHHCCCCEEEEeCCCccccCcccc----------chhHHHHHHHHHHHHHhCCeEEEEeeecCcCCceEeCCcEEECCCC
Confidence 346799999999754221100000 000134556677789999998865432 2222 3444567889999
Q ss_pred Ceec
Q 022174 114 SDLG 117 (301)
Q Consensus 114 ~i~~ 117 (301)
+++.
T Consensus 225 ~il~ 228 (269)
T cd07586 225 EVVA 228 (269)
T ss_pred CEEE
Confidence 9863
No 59
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=71.60 E-value=20 Score=32.90 Aligned_cols=64 Identities=17% Similarity=0.062 Sum_probs=38.7
Q ss_pred HhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeee---ec---------------C
Q 022174 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF---EE---------------A 98 (301)
Q Consensus 37 ~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~---~~---------------~ 98 (301)
..+|+|+|+.|=.+... . . ...|...++..|.+++++++.... +. .
T Consensus 238 a~~GAdiil~Psa~~~~-~-~--------------~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~~ 301 (363)
T cd07587 238 GLNGAEIVFNPSATVGA-L-S--------------EPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHKD 301 (363)
T ss_pred HHcCCcEEEECCCcCCC-C-c--------------hHHHHHHHHHHHHhcCcEEEEeccccccccccccccccccccccc
Confidence 45699999999644211 0 0 013445567778899999985321 11 0
Q ss_pred CCeeeEEEEEEcCCCCee
Q 022174 99 NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 99 ~~~~yN~~~~i~~~G~i~ 116 (301)
...+|=.+.+++|+|+++
T Consensus 302 ~~~f~G~S~Ii~P~G~il 319 (363)
T cd07587 302 FGHFYGSSYVAAPDGSRT 319 (363)
T ss_pred cccccceeEEECCCCCCc
Confidence 023455678888999864
No 60
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=70.79 E-value=20 Score=30.55 Aligned_cols=69 Identities=17% Similarity=0.114 Sum_probs=39.9
Q ss_pred HHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeee-eecCCC-eeeEEEEEE
Q 022174 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF-FEEANN-AHYNSIAII 109 (301)
Q Consensus 32 ~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~-~~~~~~-~~yN~~~~i 109 (301)
..+....+|+|+|+.|=.+... .. ..+...++..|.+++++++... .-..++ .++=.+.++
T Consensus 151 ~~r~~~~~ga~ll~~ps~~~~~------~~-----------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii 213 (253)
T cd07583 151 LFRKLALEGAEILFVPAEWPAA------RI-----------EHWRTLLRARAIENQAFVVACNRVGTDGGNEFGGHSMVI 213 (253)
T ss_pred HHHHHHHcCCcEEEECCCCCCC------ch-----------HHHHHHHHHHHHHhCCEEEEEcCcccCCCceecceeEEE
Confidence 3445556799999999542110 00 1233345667888899987432 212222 233345778
Q ss_pred cCCCCeec
Q 022174 110 DADGSDLG 117 (301)
Q Consensus 110 ~~~G~i~~ 117 (301)
+|+|+++.
T Consensus 214 ~p~G~il~ 221 (253)
T cd07583 214 DPWGEVLA 221 (253)
T ss_pred CCCchhhe
Confidence 99999763
No 61
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=70.60 E-value=29 Score=31.58 Aligned_cols=69 Identities=23% Similarity=0.222 Sum_probs=42.2
Q ss_pred HHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee-cCCC-eeeEEEEEE
Q 022174 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAII 109 (301)
Q Consensus 32 ~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~~-~~yN~~~~i 109 (301)
+.+.+..+|+|+|+-|-.+... . ...+...++..|.+++++++..... .+++ .++=.+.++
T Consensus 174 ~~R~la~~GAelii~psa~~~~----~-------------~~~~~~~~rarA~eN~~yVv~aN~~G~~~~~~~~G~S~Iv 236 (345)
T PRK13286 174 IWRDCAMKGAELIVRCQGYMYP----A-------------KEQQVLVAKAMAWANNCYVAVANAAGFDGVYSYFGHSAII 236 (345)
T ss_pred HHHHHHHcCCeEEEEccccCCC----c-------------hHHHHHHHHHHHHHCCCEEEEEecccccCCceeeeeEEEE
Confidence 3344456799999988532111 0 0134455677788999999865322 1222 344557889
Q ss_pred cCCCCeec
Q 022174 110 DADGSDLG 117 (301)
Q Consensus 110 ~~~G~i~~ 117 (301)
+|+|+++.
T Consensus 237 dp~G~vla 244 (345)
T PRK13286 237 GFDGRTLG 244 (345)
T ss_pred CCCCcEEE
Confidence 99999864
No 62
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=69.49 E-value=32 Score=29.90 Aligned_cols=77 Identities=18% Similarity=0.036 Sum_probs=41.7
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee-cC-----CCeeeEEE
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-----NNAHYNSI 106 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~-----~~~~yN~~ 106 (301)
.+.+..+|+|+|+.|=.. ++...+.. .... ....+...++..|.+++++++..... .. +-.++=.+
T Consensus 160 ~r~~~~~gadlil~ps~~--~~~~~~~~----~~~~--~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~S 231 (284)
T cd07573 160 ARLMALQGAEILFYPTAI--GSEPQEPP----EGLD--QRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGSS 231 (284)
T ss_pred HHHHHHCCCCEEEecCcc--cCCCCCcc----ccCC--chHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeecee
Confidence 444556799999998543 11111100 0000 01134455567788899999854221 11 11333456
Q ss_pred EEEcCCCCeec
Q 022174 107 AIIDADGSDLG 117 (301)
Q Consensus 107 ~~i~~~G~i~~ 117 (301)
.+++|+|+++.
T Consensus 232 ~i~~p~G~i~~ 242 (284)
T cd07573 232 FIADPFGEILA 242 (284)
T ss_pred EEECCCCCeee
Confidence 78899999863
No 63
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=69.37 E-value=39 Score=29.28 Aligned_cols=74 Identities=18% Similarity=0.026 Sum_probs=42.0
Q ss_pred HHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee-c-----CCCeeeEEEE
Q 022174 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-E-----ANNAHYNSIA 107 (301)
Q Consensus 34 ~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~-----~~~~~yN~~~ 107 (301)
+....+|+|+|+.|=.+......... .....+...++..|.+++++++..... . .+..++=.+.
T Consensus 160 r~~a~~ga~lil~ps~~~~~~~~~~~----------~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~ 229 (279)
T TIGR03381 160 RAMALMGAEVLFYPTAIGSEPHDPDL----------DSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSF 229 (279)
T ss_pred HHHHHcCCCEEEecCccCCCCccccc----------ccHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEE
Confidence 33446799999998654221100000 001234455566788899999854321 1 1223445678
Q ss_pred EEcCCCCeec
Q 022174 108 IIDADGSDLG 117 (301)
Q Consensus 108 ~i~~~G~i~~ 117 (301)
+++|+|+++.
T Consensus 230 i~~p~G~il~ 239 (279)
T TIGR03381 230 IADHTGELVA 239 (279)
T ss_pred EECCCCcEee
Confidence 8899999874
No 64
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=69.29 E-value=36 Score=27.53 Aligned_cols=45 Identities=29% Similarity=0.380 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCcEEeeeeeecCC-Ce---eeEEEEEEcCCCCeecccc
Q 022174 76 ILKMQELAKELGVVMPVSFFEEAN-NA---HYNSIAIIDADGSDLGLYR 120 (301)
Q Consensus 76 ~~~l~~~a~~~~i~iv~G~~~~~~-~~---~yN~~~~i~~~G~i~~~~~ 120 (301)
.+.++++++.+++...-......+ +. .-+..+++||+|++...|.
T Consensus 124 ~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 124 REEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 567888888888776543322222 21 2345789999999987764
No 65
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=68.91 E-value=27 Score=29.60 Aligned_cols=67 Identities=27% Similarity=0.233 Sum_probs=43.1
Q ss_pred HHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee-c-CCCeeeEEEEEEcC
Q 022174 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-E-ANNAHYNSIAIIDA 111 (301)
Q Consensus 34 ~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~-~~~~~yN~~~~i~~ 111 (301)
+.+..+|+|+|+.|-...... ...+...++..|.+++++++..... . .+...+-.+.+++|
T Consensus 153 ~~~~~~g~dli~~ps~~~~~~-----------------~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~G~S~i~~p 215 (253)
T cd07197 153 RELALKGADIILVPAAWPTAR-----------------REHWELLLRARAIENGVYVVAANRVGEEGGLEFAGGSMIVDP 215 (253)
T ss_pred HHHHHCCCcEEEECCcCCCcc-----------------hHHHHHHHHHHHHHhCCeEEEecCCCCCCCccccceeEEECC
Confidence 334567999999998653221 0144566778889999999865321 1 12244556788889
Q ss_pred CCCeec
Q 022174 112 DGSDLG 117 (301)
Q Consensus 112 ~G~i~~ 117 (301)
+|+++.
T Consensus 216 ~G~~~~ 221 (253)
T cd07197 216 DGEVLA 221 (253)
T ss_pred CCceee
Confidence 998763
No 66
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=68.63 E-value=30 Score=30.24 Aligned_cols=69 Identities=17% Similarity=0.063 Sum_probs=39.1
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeee-ecCC----CeeeEEEE
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEAN----NAHYNSIA 107 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~~----~~~yN~~~ 107 (301)
.+....+|+|+|+.|=.+..++. ...+...++..|.+++++++.... -... ..++=.+.
T Consensus 171 ~r~la~~Ga~li~~ps~~~~~~~----------------~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S~ 234 (287)
T cd07568 171 WRALGLNGAEIVFNPSATVAGLS----------------EYLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSSY 234 (287)
T ss_pred HHHHHHCCCeEEEECCcCCCCCc----------------hhhhHHHHHHHHHHCCcEEEEeccccccCCCccceEeceeE
Confidence 34445679999999965432210 012222345567788898874221 1111 13445578
Q ss_pred EEcCCCCeec
Q 022174 108 IIDADGSDLG 117 (301)
Q Consensus 108 ~i~~~G~i~~ 117 (301)
+++|+|+++.
T Consensus 235 ii~p~G~il~ 244 (287)
T cd07568 235 FVDPRGQFVA 244 (287)
T ss_pred EECCCceEEE
Confidence 8999999873
No 67
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=67.78 E-value=31 Score=29.56 Aligned_cols=64 Identities=20% Similarity=0.021 Sum_probs=37.9
Q ss_pred HHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeee-ecC----CC-eeeEEEE
Q 022174 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEA----NN-AHYNSIA 107 (301)
Q Consensus 34 ~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~----~~-~~yN~~~ 107 (301)
+....+|+|+|+.|-.+... .+...++..|.+++++++.... -.. ++ ...=.+.
T Consensus 151 r~~~~~Gadli~~ps~~~~~--------------------~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~ 210 (259)
T cd07577 151 RTLALKGADIIAHPANLVLP--------------------YCPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKSQ 210 (259)
T ss_pred HHHHHcCCCEEEECCccCCc--------------------hhhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeE
Confidence 33445799999999643211 1112346667788999885421 111 11 2334578
Q ss_pred EEcCCCCeec
Q 022174 108 IIDADGSDLG 117 (301)
Q Consensus 108 ~i~~~G~i~~ 117 (301)
+++|+|+++.
T Consensus 211 i~~p~G~i~~ 220 (259)
T cd07577 211 ITSPKGEVLA 220 (259)
T ss_pred EECCCCCEEe
Confidence 8899999863
No 68
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=67.20 E-value=26 Score=30.50 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeee
Q 022174 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (301)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G 93 (301)
++.++.+.+.++.|+.-|++.|++|.... .......+.++.+. +.+..+.+.|+++|+.+.+=
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~---~~~~~~~~~~~~~~-----~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIRTIQLAGYDV---YYEEHDEETRRRFR-----EGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEecCccc---ccCcCCHHHHHHHH-----HHHHHHHHHHHHcCCEEEEe
Confidence 45677889999999999999999875221 11111111222221 46778888899999988764
No 69
>PLN02504 nitrilase
Probab=66.81 E-value=27 Score=31.77 Aligned_cols=63 Identities=19% Similarity=0.112 Sum_probs=38.8
Q ss_pred HHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee----------------c
Q 022174 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE----------------E 97 (301)
Q Consensus 34 ~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~----------------~ 97 (301)
+....+|+|+++.|-.+. ...+...++..|.+++++++..... .
T Consensus 196 r~la~~Gadii~~p~~~~--------------------~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G~ 255 (346)
T PLN02504 196 TAMYAKGIEIYCAPTADS--------------------RETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSGT 255 (346)
T ss_pred HHHHHCCCeEEEECCCCC--------------------chhHHHHHHHHHHccCcEEEEecccccccccCcccccccccc
Confidence 334467999999984220 0144556677899999999854221 0
Q ss_pred C-----CC-eeeEEEEEEcCCCCee
Q 022174 98 A-----NN-AHYNSIAIIDADGSDL 116 (301)
Q Consensus 98 ~-----~~-~~yN~~~~i~~~G~i~ 116 (301)
+ ++ .++=.+.+++|+|+++
T Consensus 256 ~~~~~~~~~~~~G~S~IvdP~G~vl 280 (346)
T PLN02504 256 EEDLTPDSIVCAGGSVIISPSGTVL 280 (346)
T ss_pred cccccccccccCcceEEECCCCCEe
Confidence 0 11 1234478888999876
No 70
>PLN02747 N-carbamolyputrescine amidase
Probab=65.42 E-value=52 Score=28.91 Aligned_cols=75 Identities=17% Similarity=0.004 Sum_probs=42.2
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee---c----CC---Cee
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE---E----AN---NAH 102 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~---~----~~---~~~ 102 (301)
.+....+|+|+|+.|=.+.+... +. +.. ....+...++..|.+++++++..... . .+ ..+
T Consensus 165 ~r~~~~~Ga~lil~ps~~~~~~~--~~---~~~-----~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~~ 234 (296)
T PLN02747 165 ARAMVLQGAEVLLYPTAIGSEPQ--DP---GLD-----SRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKITF 234 (296)
T ss_pred HHHHHHCCCCEEEEeCccCCCCc--cc---ccc-----hHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCceE
Confidence 44445679999999976532100 00 000 00134455677788889988754211 0 11 123
Q ss_pred eEEEEEEcCCCCeec
Q 022174 103 YNSIAIIDADGSDLG 117 (301)
Q Consensus 103 yN~~~~i~~~G~i~~ 117 (301)
+=.+.+++|+|+++.
T Consensus 235 ~G~S~i~~p~G~vl~ 249 (296)
T PLN02747 235 YGGSFIAGPTGEIVA 249 (296)
T ss_pred eeeeEEECCCCCEee
Confidence 345678899999874
No 71
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.00 E-value=35 Score=24.55 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=29.5
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccc
Q 022174 173 QGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGK 222 (301)
Q Consensus 173 ~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~ 222 (301)
+.||+|+.++.. -++... ...+..|.++++|+++++..|.
T Consensus 47 ~~aD~VIv~t~~---------vsH~~~-~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 47 KKADLVIVFTDY---------VSHNAM-WKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred CCCCEEEEEeCC---------cChHHH-HHHHHHHHHcCCcEEEECCCCH
Confidence 579999999983 233322 2356689999999999997664
No 72
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=65.00 E-value=31 Score=29.86 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeee
Q 022174 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G 93 (301)
.+..++.+.+.|+.|+.-|++.|+++-.. .++.. . ..+.++... ..++.+.+.|+++|+.+.+=
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~~-~-~~~~~~~~~-----~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYLT-P-PNVIWGRLA-----ENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCC-C-HHHHHHHHH-----HHHHHHHHHHHHcCCEEEEe
Confidence 45678899999999999999998886432 22211 1 112222221 56788999999999887653
No 73
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=64.60 E-value=35 Score=29.14 Aligned_cols=68 Identities=18% Similarity=0.081 Sum_probs=39.5
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDAD 112 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~ 112 (301)
.+.+..+|+|+|+.|=.+..... ....+...++..|.+++++++..... +....=.+.+++|+
T Consensus 156 ~~~~~~~ga~lil~ps~~~~~~~---------------~~~~~~~~~~~rA~en~~~vv~~n~~--g~~~~G~S~i~~p~ 218 (255)
T cd07581 156 ARALALAGADVIVVPAAWVAGPG---------------KEEHWETLLRARALENTVYVAAAGQA--GPRGIGRSMVVDPL 218 (255)
T ss_pred HHHHHHCCCcEEEECCcccCCCC---------------chHHHHHHHHHHHHHhCCEEEEEcCc--CCCcccceEEECCC
Confidence 44445679999999853321100 00134455667788899998865311 11122245788899
Q ss_pred CCeec
Q 022174 113 GSDLG 117 (301)
Q Consensus 113 G~i~~ 117 (301)
|+++.
T Consensus 219 G~i~~ 223 (255)
T cd07581 219 GVVLA 223 (255)
T ss_pred cceee
Confidence 98764
No 74
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=64.24 E-value=27 Score=30.05 Aligned_cols=57 Identities=14% Similarity=0.018 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEe
Q 022174 20 DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (301)
Q Consensus 20 ~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv 91 (301)
++..+..+.+.+.++..+++|..+++|||..-+... .. .++-.=...+|.+.++.|+
T Consensus 119 ~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g----------~l-----~~Fk~Ga~~lA~~~~~PIv 175 (245)
T PRK15018 119 NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGR----------GL-----LPFKTGAFHAAIAAGVPII 175 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCC----------CC-----CCccHHHHHHHHHcCCCEE
Confidence 455666777777778777788899999996533210 11 1333445677888888876
No 75
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=63.46 E-value=46 Score=29.27 Aligned_cols=69 Identities=16% Similarity=0.023 Sum_probs=40.1
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee-cCC----Ceee-EEE
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EAN----NAHY-NSI 106 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~----~~~y-N~~ 106 (301)
.+....+|+|+|+.|=.+..... ...+...++..|.+++++++..... ..+ ...| =.+
T Consensus 182 ~r~la~~Gadlil~psa~~~~~~----------------~~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~~~~G~S 245 (294)
T cd07582 182 ARGLAMNGAEVLLRSSSEVPSVE----------------LDPWEIANRARALENLAYVVSANSGGIYGSPYPADSFGGGS 245 (294)
T ss_pred HHHHHHCCCcEEEEcCCCCCCcc----------------hhhHHHHHHHHHHhcCCEEEEecccccCcccccCceeccee
Confidence 34445679999999875532210 0123344567778899999854321 111 1223 346
Q ss_pred EEEcCCCCeec
Q 022174 107 AIIDADGSDLG 117 (301)
Q Consensus 107 ~~i~~~G~i~~ 117 (301)
.+++|+|+++.
T Consensus 246 ~ivdp~G~vla 256 (294)
T cd07582 246 MIVDYKGRVLA 256 (294)
T ss_pred EEECCCCCEEE
Confidence 77789999863
No 76
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=62.52 E-value=34 Score=30.00 Aligned_cols=83 Identities=10% Similarity=0.017 Sum_probs=41.2
Q ss_pred HHHHhCCCcEEEecccccCcccCCccchHHHhh-cCCCCC-ChhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcC
Q 022174 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQR-AKPYKD-HPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA 111 (301)
Q Consensus 34 ~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~ 111 (301)
+....+|+|+|+.|-.+...+............ -.+... ....+.++.-|.+++++++.....-.....+=.+.+++|
T Consensus 146 r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv~aN~~g~~~~~~G~S~ii~P 225 (279)
T cd07579 146 RVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFAFANVPDPARGYTGWSGVFGP 225 (279)
T ss_pred HHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHHHhHhHHhhCCeEEEEeeccCCccccccccEEECC
Confidence 334567999999998654321100000000000 000000 012234677788999999876432111122233568899
Q ss_pred CCCee
Q 022174 112 DGSDL 116 (301)
Q Consensus 112 ~G~i~ 116 (301)
+|+++
T Consensus 226 ~G~v~ 230 (279)
T cd07579 226 DTFAF 230 (279)
T ss_pred CeEEc
Confidence 99875
No 77
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=62.44 E-value=38 Score=29.36 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEee
Q 022174 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (301)
.++.++.+.+.|+.|+.-|++.|++|-. ..+.... ....++.+. ..+..+.+.|+++|+.+.+
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~-~~~~~~~~~-----~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGY--DVYYEEK-SEETRQRFI-----EGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCc--ccccccc-cHHHHHHHH-----HHHHHHHHHHHHhCCEEEE
Confidence 3467888899999999999999998621 1111111 111222221 4567788888899998775
No 78
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=61.89 E-value=43 Score=29.00 Aligned_cols=65 Identities=20% Similarity=0.098 Sum_probs=44.4
Q ss_pred HhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeec-CC--CeeeEEEEEEcCCC
Q 022174 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN--NAHYNSIAIIDADG 113 (301)
Q Consensus 37 ~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~-~~--~~~yN~~~~i~~~G 113 (301)
..+|+++|+.|-.+..... ...+...++.-|.+++++++.....- ++ ...+-.+++++|.|
T Consensus 163 a~~Gaeii~~p~a~~~~~~----------------~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G 226 (274)
T COG0388 163 ALGGAELLLVPAAWPAERG----------------LDHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDG 226 (274)
T ss_pred HhcCCeEEEEcCCCCCccc----------------HHHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCc
Confidence 3448999999997755421 01444557777889999999764322 21 35777789999999
Q ss_pred Ceec
Q 022174 114 SDLG 117 (301)
Q Consensus 114 ~i~~ 117 (301)
+++.
T Consensus 227 ~v~~ 230 (274)
T COG0388 227 EVLA 230 (274)
T ss_pred cEEe
Confidence 8653
No 79
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=58.98 E-value=23 Score=28.41 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=42.8
Q ss_pred HHHHHHHCCCcEEEeecccCCCCCCC----CCCcH----------HHHHHHhhhhHhcCcceEEEecCccccccccccCC
Q 022174 166 AARAMVLQGAEILFYPTAIGSEPQDD----GLDSR----------DHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGK 231 (301)
Q Consensus 166 ~~~~~~~~gadlil~p~~~~~~~~~~----~~~~~----------~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~ 231 (301)
+.+.+..+|+|+|+.|-.+.. +|.. +.... ..+.......|.+++++++.--..- .
T Consensus 26 ~~~~a~~~~~dlvv~PE~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~~~-~-------- 95 (186)
T PF00795_consen 26 LIEEAARQGADLVVFPEMALP-GYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIPER-D-------- 95 (186)
T ss_dssp HHHHHHHTTESEEEEETTTTT-CS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEEEE-E--------
T ss_pred HHHHHHHCCCCEEEcCcchhc-ccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccccccc-c--------
Confidence 445667789999999998543 1200 00000 2233445668889998887542111 1
Q ss_pred cceeeecceEEECCCCccc
Q 022174 232 SQITFYGNSFIAGPTGEIV 250 (301)
Q Consensus 232 ~~~~~~G~S~i~~p~G~~l 250 (301)
+-.++-...+++|+|+++
T Consensus 96 -~~~~~N~~~~~~~~g~~~ 113 (186)
T PF00795_consen 96 -DGGLYNSAVVIDPDGEIL 113 (186)
T ss_dssp -TTEEEEEEEEEETTSEEE
T ss_pred -cccccceeEEEEeeeccc
Confidence 012445677788899877
No 80
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=58.87 E-value=42 Score=27.25 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeee
Q 022174 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (301)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G 93 (301)
+..++.+.+.++.|+.-|++.++++=.... ........+.++.+. +.+..+.+.|+++++.+.+=
T Consensus 67 ~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~-~~~~~~~~~~~~~~~-----~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 67 EEALEYLKKAIDLAKRLGAKYIVVHSGRYP-SGPEDDTEENWERLA-----ENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTBSEEEEECTTES-SSTTSSHHHHHHHHH-----HHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCcccc-cccCCCHHHHHHHHH-----HHHHHHHhhhhhhcceEEEe
Confidence 455889999999999999999998832100 111111112222222 56788888899999876654
No 81
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=58.82 E-value=45 Score=21.89 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeee
Q 022174 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (301)
Q Consensus 28 ~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~ 94 (301)
...++++.|+++|.+.+.+=+.... .....+.+.+++.++.++.|.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~---------------------~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNL---------------------FGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcc---------------------cCHHHHHHHHHHcCCeEEEEE
Confidence 5778999999999999999996521 112345666777899998886
No 82
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=58.23 E-value=49 Score=29.16 Aligned_cols=43 Identities=16% Similarity=0.016 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeec-----------------CCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEE-----------------ANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~-----------------~~~~~yN~~~~i~~~G~i~ 116 (301)
.+...++..|.+++++++.....- .+...+=.+.+++|+|+++
T Consensus 193 ~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~~~~~~~~~~G~S~iv~P~G~il 252 (297)
T cd07564 193 AWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEEADPLEVLGGGGSAIVGPDGEVL 252 (297)
T ss_pred HHHHHHHHHHHhcCCEEEEcccccChhHcccccccccccccccccCCCceEEECCCCCee
Confidence 344556778889999998642110 0112344578889999886
No 83
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=57.98 E-value=40 Score=25.05 Aligned_cols=50 Identities=20% Similarity=0.071 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEe
Q 022174 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (301)
Q Consensus 27 ~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv 91 (301)
....+.+.++.++|-.+++|||-..+.. .... ++..-+..+|.+.++.|+
T Consensus 76 ~~~~~~~~~~l~~g~~v~ifPeG~~~~~----------~~~~-----~f~~g~~~la~~~~~pvv 125 (130)
T TIGR00530 76 ATALKAAIEVLKQGRSIGVFPEGTRSRG----------RDIL-----PFKKGAFHIAIKAGVPIL 125 (130)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCC----------CCCC-----CcchhHHHHHHHcCCCEE
Confidence 3444555556677889999999764311 0111 334556677888888776
No 84
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=57.22 E-value=19 Score=30.84 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=45.8
Q ss_pred hCCCcEEEeccccc--CcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeee-ecCC--CeeeEEEEEEcCC
Q 022174 38 GKGANIILIQELFE--GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEAN--NAHYNSIAIIDAD 112 (301)
Q Consensus 38 ~~~~dlvvfPE~~l--~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~~--~~~yN~~~~i~~~ 112 (301)
+.||+++.||-.+. ||- ..|--.|+.-|.+.+|++++... -+++ ..-|--+.++||=
T Consensus 184 ~~gA~iLtyPSAFT~~TG~------------------AHWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPW 245 (295)
T KOG0807|consen 184 KMGAQILTYPSAFTIKTGE------------------AHWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPW 245 (295)
T ss_pred HcCCcEEeccchhhhcccH------------------HHHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcch
Confidence 56999999998663 331 24556677778899999997642 1222 2346667899999
Q ss_pred CCeecccccc
Q 022174 113 GSDLGLYRKS 122 (301)
Q Consensus 113 G~i~~~~~K~ 122 (301)
|.|++.+...
T Consensus 246 GtVva~~se~ 255 (295)
T KOG0807|consen 246 GTVVARCSER 255 (295)
T ss_pred hhhheecCCC
Confidence 9998765533
No 85
>PLN00202 beta-ureidopropionase
Probab=56.83 E-value=55 Score=30.51 Aligned_cols=64 Identities=14% Similarity=0.016 Sum_probs=38.3
Q ss_pred HhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee-cC----------C------
Q 022174 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA----------N------ 99 (301)
Q Consensus 37 ~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~----------~------ 99 (301)
..+|+|+|+.|=.+.... . ...|...++..|.+++++++..... .+ +
T Consensus 259 a~~GAdiIl~Psa~~~~~-----~-----------~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~ 322 (405)
T PLN00202 259 GLNGAEIVFNPSATVGDL-----S-----------EPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKD 322 (405)
T ss_pred HHCCCcEEEECCCCCCcc-----C-----------HHHHHHHHHHHHHhcCCEEEEeccccccccccccccccccccccc
Confidence 456999999996542110 0 0134456677888999998854211 11 1
Q ss_pred -CeeeEEEEEEcCCCCee
Q 022174 100 -NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 100 -~~~yN~~~~i~~~G~i~ 116 (301)
..++=.+.+++|+|+++
T Consensus 323 ~~~f~G~S~Iv~P~G~vl 340 (405)
T PLN00202 323 FGHFYGSSHFSAPDASCT 340 (405)
T ss_pred cccccceeEEEcCCCCEe
Confidence 12455577888888875
No 86
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=55.02 E-value=51 Score=29.21 Aligned_cols=78 Identities=14% Similarity=0.046 Sum_probs=42.0
Q ss_pred HHHHHH----CCCcEEEeecccCCCCCCCCCC-cH---------HHHHHHhhhhHhcCcceEEEecCccccccccccCCc
Q 022174 167 ARAMVL----QGAEILFYPTAIGSEPQDDGLD-SR---------DHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKS 232 (301)
Q Consensus 167 ~~~~~~----~gadlil~p~~~~~~~~~~~~~-~~---------~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~ 232 (301)
...++. +|+|+|+.|-.+.. +|..... .. ......++..|.+++++++.-.. -... +.
T Consensus 25 i~~A~~~~~~~gadLIVfPEl~lt-GY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~-e~~~-----~~- 96 (295)
T cd07566 25 LDKTKKRAKLKKPDILVLPELALT-GYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYP-EKVD-----ES- 96 (295)
T ss_pred HHHHHhhccCCCCcEEEcCCCCcc-cCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeee-EecC-----CC-
Confidence 444555 79999999998643 2221100 00 01123345678899998875321 1000 10
Q ss_pred ceeeecceEEECCCCccccc
Q 022174 233 QITFYGNSFIAGPTGEIVAA 252 (301)
Q Consensus 233 ~~~~~G~S~i~~p~G~~l~~ 252 (301)
.-.++-.+.+++|+|++++.
T Consensus 97 ~~~~yNta~vi~~~G~ii~~ 116 (295)
T cd07566 97 SPKLYNSALVVDPEGEVVFN 116 (295)
T ss_pred CCceEEEEEEEcCCCeEEEE
Confidence 01344567888999987643
No 87
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=55.01 E-value=57 Score=28.30 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCC-----ChhHHHHHHHHHHhCcEEeeeeeec
Q 022174 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKD-----HPTILKMQELAKELGVVMPVSFFEE 97 (301)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~a~~~~i~iv~G~~~~ 97 (301)
-+-++++.+.+++..+ ...+-+.|=+-..- +-.|......+++..+.. ....+.+++.|+++.++-..|--..
T Consensus 156 PdELeKm~~~Vd~i~~-~~~~~~~PlFIsvD-PeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~ 233 (280)
T KOG2792|consen 156 PDELEKMSAVVDEIEA-KPGLPPVPLFISVD-PERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDE 233 (280)
T ss_pred hHHHHHHHHHHHHHhc-cCCCCccceEEEeC-cccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCC
Confidence 4567888888887654 33333225432221 212222222222222211 2457899999999999987764322
Q ss_pred CCC---eeeEEEEEEcCCCCeeccccccc
Q 022174 98 ANN---AHYNSIAIIDADGSDLGLYRKSH 123 (301)
Q Consensus 98 ~~~---~~yN~~~~i~~~G~i~~~~~K~~ 123 (301)
+.. ..-.-.++|||+|+.+-.|-+.+
T Consensus 234 ~~DYlVDHSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 234 DQDYLVDHSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred CCCeeeeeeEEEEEECCCcceehhhcccC
Confidence 222 23344689999999876555443
No 88
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=54.99 E-value=46 Score=28.63 Aligned_cols=62 Identities=10% Similarity=-0.040 Sum_probs=38.5
Q ss_pred CCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee-cCC--CeeeEEEEEEcCCCCe
Q 022174 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EAN--NAHYNSIAIIDADGSD 115 (301)
Q Consensus 39 ~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~--~~~yN~~~~i~~~G~i 115 (301)
+++|+|+.|=.+.... ...+...++..|.+++++++..... ..+ ..++=.+.+++|+|++
T Consensus 154 ~gad~i~~~s~~~~~~-----------------~~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~v 216 (256)
T PRK10438 154 NDYDLALYVANWPAPR-----------------SLHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEI 216 (256)
T ss_pred cCCCEEEEecCCCCCc-----------------hHHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcE
Confidence 4789999987542110 0134445677888999999865321 111 1233457889999998
Q ss_pred ec
Q 022174 116 LG 117 (301)
Q Consensus 116 ~~ 117 (301)
+.
T Consensus 217 l~ 218 (256)
T PRK10438 217 IA 218 (256)
T ss_pred EE
Confidence 64
No 89
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=54.32 E-value=40 Score=28.84 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=33.4
Q ss_pred EEEEeccCCcHHHHHHHHHCCCcEEE--eecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEe
Q 022174 154 GVAICWDQWFPEAARAMVLQGAEILF--YPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVAS 217 (301)
Q Consensus 154 g~~IC~D~~~pe~~~~~~~~gadlil--~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~ 217 (301)
++++|-|. .++..+.+.++|+|+|+ +|..|.. .. .. .......-....++++++.|.++
T Consensus 34 ~V~~~ld~-t~~vi~~A~~~~~dlIItHHP~~f~~--~~-~~-~~~~~~~~~~~~li~~~I~vy~~ 94 (241)
T PF01784_consen 34 KVLVALDA-TPEVIEEAIEKGADLIITHHPLFFKP--LK-SL-TGDDYKGKIIEKLIKNGISVYSA 94 (241)
T ss_dssp EEEEESS--SHHHHHHHHHTT-SEEEESS-SSSST--SS-HC-HCHSHHHHHHHHHHHTT-EEEEE
T ss_pred EEEEEEeC-CHHHHHHHHHcCCCEEEEcCchhhcC--Cc-cc-cccchhhHHHHHHHHCCCEEEEe
Confidence 78889998 57778889999999999 5655421 10 00 01111222344677788887654
No 90
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=54.03 E-value=62 Score=26.05 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeee
Q 022174 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (301)
Q Consensus 27 ~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~ 95 (301)
+...+.++..++.|.|.||+--....+...... +....-......+.++.+.+.|.++|+-|.+|..
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps--~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQWTGYGGFAFYPS--KLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEeecCCcccCCc--cccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 566777777888899999988666554321111 0100011123347899999999999999999974
No 91
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=53.68 E-value=90 Score=23.27 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=44.2
Q ss_pred EEEEEecccC--CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhC
Q 022174 10 VVSALQFACT--DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (301)
Q Consensus 10 kia~~Q~~~~--~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (301)
|+.++.+=.. ......+..+.++.++.+++++.+|...- +-+. .....+.+++++++++
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~---~~~~----------------~~~~~~~~~~~~~~~~ 84 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS---PEFA----------------FERDLANVKSAVLRYG 84 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc---Cccc----------------cccCHHHHHHHHHHcC
Confidence 3444444321 33455566677777766666666655421 0000 0122455666666665
Q ss_pred cEEeeeeee------cCCCeeeEEEEEEcCCCCeec
Q 022174 88 VVMPVSFFE------EANNAHYNSIAIIDADGSDLG 117 (301)
Q Consensus 88 i~iv~G~~~------~~~~~~yN~~~~i~~~G~i~~ 117 (301)
+..-+-.-. ..+-.-.-+.++||++|+++.
T Consensus 85 ~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~ 120 (126)
T cd03012 85 ITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRH 120 (126)
T ss_pred CCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEE
Confidence 543221100 011123456788998998763
No 92
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=53.09 E-value=58 Score=26.48 Aligned_cols=74 Identities=23% Similarity=0.198 Sum_probs=43.3
Q ss_pred EEEEEeccc----CC------CHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHH
Q 022174 10 VVSALQFAC----TD------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM 79 (301)
Q Consensus 10 kia~~Q~~~----~~------~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (301)
.+.++++.. .. +.++..+.+.++++++++.++.+|++-=.....+.... .... .-..+.+.+
T Consensus 67 dlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~-------~~~~-~~~~~~~~~ 138 (198)
T cd01821 67 DYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGG-------KVED-TLGDYPAAM 138 (198)
T ss_pred CEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCC-------cccc-cchhHHHHH
Confidence 456667665 11 45667777777777777888888776211111111000 0000 113677899
Q ss_pred HHHHHHhCcEEe
Q 022174 80 QELAKELGVVMP 91 (301)
Q Consensus 80 ~~~a~~~~i~iv 91 (301)
+++|+++++.++
T Consensus 139 ~~~a~~~~~~~v 150 (198)
T cd01821 139 RELAAEEGVPLI 150 (198)
T ss_pred HHHHHHhCCCEE
Confidence 999999998765
No 93
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=52.27 E-value=66 Score=27.92 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeee
Q 022174 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G 93 (301)
.+..++.+++.++.|++-|+..|+++-.. .++ .....+.++... ..++.+.+.|+++|+.|.+=
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~~~~~~-~~~--~~~~~~~~~~~~-----~~l~~l~~~A~~~GV~i~iE 157 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQLAGYD-VYY--EQANNETRRRFI-----DGLKESVELASRASVTLAFE 157 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCcc-ccc--cccHHHHHHHHH-----HHHHHHHHHHHHhCCEEEEe
Confidence 35567889999999999999999986211 011 000111112111 45678888899999887653
No 94
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=52.19 E-value=44 Score=24.91 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhCCCcEEEeccccc
Q 022174 27 ATAERLVRAAHGKGANIILIQELFE 51 (301)
Q Consensus 27 ~~~~~~i~~A~~~~~dlvvfPE~~l 51 (301)
....+.+.+..+++--+++|||...
T Consensus 78 ~~~~~~~~~~l~~~~~i~ifPEG~~ 102 (132)
T PF01553_consen 78 RKALKDIKEILRKGGSIVIFPEGTR 102 (132)
T ss_dssp HHHHHHHHHHHHC---EEE-TT-S-
T ss_pred chhHHHHHHHhhhcceeeecCCccC
Confidence 3344444445455555999999643
No 95
>PRK12677 xylose isomerase; Provisional
Probab=51.80 E-value=1.1e+02 Score=28.40 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcE-EEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHh--CcEEeee
Q 022174 23 STNLATAERLVRAAHGKGANI-ILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL--GVVMPVS 93 (301)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dl-vvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~--~i~iv~G 93 (301)
+..++.+++.|+.|.+-|++. +|||=.--+.|.......+.++... +.+..+.+.|++. ++.|.+=
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~-----eaL~~l~~~A~~~G~gV~laIE 178 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYR-----EAIDLLAAYVKDQGYDLRFALE 178 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHH-----HHHHHHHHHHHhcCCCcEEEEc
Confidence 445888999999999999985 5555422111111111111222111 4556777777774 4765543
No 96
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=51.69 E-value=49 Score=28.72 Aligned_cols=63 Identities=11% Similarity=0.154 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeee
Q 022174 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G 93 (301)
.+..++.+.+.++.|++-|++.+++.-....+ ....+.++... ..+..+.+.|+++++.+.+=
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~----~~~~~~~~~~~-----~~l~~l~~~a~~~gi~l~lE 142 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGSYLG----QSKEEGLKRVI-----EALNELIDKAETKGVVIALE 142 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC----CCHHHHHHHHH-----HHHHHHHHhccCCCCEEEEe
Confidence 67788899999999999999998874322111 11122222221 44566666667778876653
No 97
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=51.43 E-value=78 Score=27.09 Aligned_cols=65 Identities=20% Similarity=0.068 Sum_probs=36.9
Q ss_pred HHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeee-ecCCC-eeeEEEEEEcC
Q 022174 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANN-AHYNSIAIIDA 111 (301)
Q Consensus 34 ~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~~~-~~yN~~~~i~~ 111 (301)
+....+|+++++.|=.+..+.. .. ......|.+++++++.... -..++ ..+=.+.+++|
T Consensus 156 r~~~~~ga~ll~~ps~~~~~~~------------------~~-~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~ii~p 216 (258)
T cd07578 156 RLLALGGADVICHISNWLAERT------------------PA-PYWINRAFENGCYLIESNRWGLERGVQFSGGSCIIEP 216 (258)
T ss_pred HHHHHcCCCEEEEcCCCCCCCC------------------cc-hHHHHhhhcCCeEEEEecceeccCCcceeeEEEEECC
Confidence 3344579999999865322110 00 1113456788888885532 11122 23445688999
Q ss_pred CCCeec
Q 022174 112 DGSDLG 117 (301)
Q Consensus 112 ~G~i~~ 117 (301)
+|+++.
T Consensus 217 ~G~il~ 222 (258)
T cd07578 217 DGTIQA 222 (258)
T ss_pred CCcEee
Confidence 999863
No 98
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=50.94 E-value=76 Score=30.43 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=53.9
Q ss_pred eEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCC
Q 022174 152 KIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGK 231 (301)
Q Consensus 152 ~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~ 231 (301)
++++.|.+| +........|+|+++.||.+- | -+..+|..+ ..|+.. .+-.+| |=
T Consensus 350 ~~~~~i~~~----~~la~~i~agaD~~lmPSrfE--P-----cGL~ql~am------ryGtvp-Iv~~tG--------GL 403 (487)
T COG0297 350 RVLVVIGYD----EPLAHLIYAGADVILMPSRFE--P-----CGLTQLYAM------RYGTLP-IVRETG--------GL 403 (487)
T ss_pred eEEEEeeec----HHHHHHHHhcCCEEEeCCcCc--C-----CcHHHHHHH------HcCCcc-eEcccC--------Cc
Confidence 566666655 443445557999999999852 2 234444443 356522 223343 10
Q ss_pred cceeeecceEEECCCCccccccCCCCCcEEEEEechhhHHhhhhccCcccccChhhHHHHHh
Q 022174 232 SQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 293 (301)
Q Consensus 232 ~~~~~~G~S~i~~p~G~~l~~~~~~~~~~~~~~ld~~~~~~~r~~~~~~~~~~~~~y~~~~~ 293 (301)
...|+ +..... ......|+++.+-+.+.+..+-.+.-.+....+.+++.+..
T Consensus 404 -------adTV~-~~~~~~--~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~ 455 (487)
T COG0297 404 -------ADTVV-DRNEWL--IQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQP 455 (487)
T ss_pred -------cceec-Cccchh--ccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 12222 222222 22335777777777776665544333333344454555544
No 99
>PRK13287 amiF formamidase; Provisional
Probab=50.79 E-value=1e+02 Score=27.85 Aligned_cols=67 Identities=18% Similarity=0.108 Sum_probs=37.0
Q ss_pred HHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeec-CCC-eeeEEEEEEcC
Q 022174 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANN-AHYNSIAIIDA 111 (301)
Q Consensus 34 ~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~-~~~-~~yN~~~~i~~ 111 (301)
+....+|+|+|+-|=.+... . ...+.-..+.-|.+++++++.....- ++. .++=.+.+++|
T Consensus 175 R~~a~~GAeill~~s~~~~~----~-------------~~~w~~~~~arA~en~~~vv~an~~G~~~~~~~~G~S~Iidp 237 (333)
T PRK13287 175 REAAYKGANVMIRISGYSTQ----V-------------REQWILTNRSNAWQNLMYTASVNLAGYDGVFYYFGEGQVCNF 237 (333)
T ss_pred HHHHHCCCeEEEECCccCCc----c-------------hhHHHHHHHHHHHhCCcEEEEEeccccCCCeeeeeeeEEECC
Confidence 44445799999987432111 0 01222333445667888887543221 121 23345678899
Q ss_pred CCCeec
Q 022174 112 DGSDLG 117 (301)
Q Consensus 112 ~G~i~~ 117 (301)
+|+++.
T Consensus 238 ~G~vl~ 243 (333)
T PRK13287 238 DGTTLV 243 (333)
T ss_pred CCcEEE
Confidence 999874
No 100
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=49.12 E-value=48 Score=23.89 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEecccccC
Q 022174 24 TNLATAERLVRAAHGKGANIILIQELFEG 52 (301)
Q Consensus 24 ~n~~~~~~~i~~A~~~~~dlvvfPE~~l~ 52 (301)
.+.+.+.+.++ +.++|..+++|||-...
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~ 87 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRS 87 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccC
Confidence 45555555554 45568899999997643
No 101
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=47.75 E-value=68 Score=27.84 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=40.9
Q ss_pred HHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECC
Q 022174 166 AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 245 (301)
Q Consensus 166 ~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p 245 (301)
+.+.+..+|+|+++.|-.+.. +|. ..........+..|.+++++++.-...- .. + .-.++-...+++|
T Consensus 31 ~i~~a~~~ga~lvvfPE~~l~-g~~---~~~~~~~~~l~~~ak~~~i~ii~G~~~~-~~-----~--~~~~~Ns~~~i~~ 98 (270)
T cd07571 31 LTRELADEKPDLVVWPETALP-FDL---QRDPDALARLARAARAVGAPLLTGAPRR-EP-----G--GGRYYNSALLLDP 98 (270)
T ss_pred HHhhcccCCCCEEEecCCcCC-ccc---ccCHHHHHHHHHHHHhcCCeEEEeeeee-cc-----C--CCceEEEEEEECC
Confidence 445555678999999987532 111 1112233445556888999887533210 00 0 0122335667888
Q ss_pred CCcccc
Q 022174 246 TGEIVA 251 (301)
Q Consensus 246 ~G~~l~ 251 (301)
+|+++.
T Consensus 99 ~G~i~~ 104 (270)
T cd07571 99 GGGILG 104 (270)
T ss_pred CCCCcC
Confidence 897653
No 102
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=47.22 E-value=85 Score=26.89 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=50.7
Q ss_pred cceEEEEEeccc-CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHH
Q 022174 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE 85 (301)
Q Consensus 7 ~~~kia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 85 (301)
+++|||.+|+.- .+-.-+.++..+++++.+. .+|++..|=+.-..-.+. ..-.+.+ -.+...+.++.++++-++
T Consensus 2 ~~ikva~~~L~gC~GC~~slldl~E~L~dll~--~~div~~~~l~D~keiPE-vDValVE--GsV~~ee~lE~v~ElRek 76 (247)
T COG1941 2 EKIKVATVWLTGCSGCHMSLLDLYEKLLDLLE--DADIVYCPTLVDEKEIPE-VDVALVE--GSVCDEEELELVKELREK 76 (247)
T ss_pred cceEEEEEEeccccchHHHHHhHHHHHHHhhh--hhcEEEeecccccccCCc-ccEEEEe--cccCcHHHHHHHHHHHHh
Confidence 378999999997 6544444444444444432 337777665443320000 0000000 001123678888999888
Q ss_pred hCcEEeeeeeecCCC
Q 022174 86 LGVVMPVSFFEEANN 100 (301)
Q Consensus 86 ~~i~iv~G~~~~~~~ 100 (301)
.++.|.+|.=...||
T Consensus 77 akivVA~GsCA~~Gg 91 (247)
T COG1941 77 AKIVVALGSCAVTGG 91 (247)
T ss_pred CcEEEEEecchhcCC
Confidence 899999997666665
No 103
>PHA01633 putative glycosyl transferase group 1
Probab=46.54 E-value=50 Score=29.93 Aligned_cols=37 Identities=11% Similarity=-0.009 Sum_probs=25.3
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccc
Q 022174 173 QGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGK 222 (301)
Q Consensus 173 ~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~ 222 (301)
..+|+++.||-+ ++++ +...-|...|+||+.++..|.
T Consensus 222 ~~aDifV~PS~~--EgfG-----------lvlLEAMA~G~PVVas~~~~l 258 (335)
T PHA01633 222 GAMDFTIVPSGT--EGFG-----------MPVLESMAMGTPVIHQLMPPL 258 (335)
T ss_pred HhCCEEEECCcc--ccCC-----------HHHHHHHHcCCCEEEccCCCc
Confidence 469999999974 2221 233446678999998887553
No 104
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=46.33 E-value=82 Score=23.34 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHh-CcEEeeee
Q 022174 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMPVSF 94 (301)
Q Consensus 27 ~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~i~iv~G~ 94 (301)
+++...+++.+..++|.|.|.=.-..+.... .-+.++.+.+.-++. ++.||.|+
T Consensus 52 ~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~--------------~CP~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 52 RKLVRRIKKLKKNGADVIHLSSCMVKGNPHG--------------PCPHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred hHHHHHHHHHHHCCCCEEEEcCCEecCCCCC--------------CCCCHHHHHHHHHHHhCCCEeeec
Confidence 4566666777788999999987665543110 013455555555554 89888875
No 105
>PRK13981 NAD synthetase; Provisional
Probab=45.62 E-value=93 Score=30.16 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=41.5
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeee-ecCCCeee-EEEEEEc
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANNAHY-NSIAIID 110 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~~~~~y-N~~~~i~ 110 (301)
.+....+|+|+|+.|=.+ +|.... . ..+...++..|.+++++++.-.. -..++..| -.+.+++
T Consensus 154 ~r~la~~Gadlil~psa~--~~~~~~--~-----------~~~~~~~~~rA~En~~~vv~aN~vG~~~~~~f~G~S~i~d 218 (540)
T PRK13981 154 AETLAEAGAELLLVPNAS--PYHRGK--P-----------DLREAVLRARVRETGLPLVYLNQVGGQDELVFDGASFVLN 218 (540)
T ss_pred HHHHHHCCCcEEEEcCCC--cccCCc--H-----------HHHHHHHHHHHHHhCCeEEEEecccCCCceEEeCceEEEC
Confidence 344456799999999432 221110 0 12335678889999999885432 11222233 4567888
Q ss_pred CCCCeec
Q 022174 111 ADGSDLG 117 (301)
Q Consensus 111 ~~G~i~~ 117 (301)
|+|+++.
T Consensus 219 p~G~il~ 225 (540)
T PRK13981 219 ADGELAA 225 (540)
T ss_pred CCCCEee
Confidence 9998864
No 106
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=45.55 E-value=1.1e+02 Score=26.95 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=25.4
Q ss_pred HHHHHHHhCcEEeeeee--ecCCCeeeEEEEEEcCCCCeec
Q 022174 79 MQELAKELGVVMPVSFF--EEANNAHYNSIAIIDADGSDLG 117 (301)
Q Consensus 79 l~~~a~~~~i~iv~G~~--~~~~~~~yN~~~~i~~~G~i~~ 117 (301)
++.-|.+++++++.... ...+..++=.+.+++|+|+++.
T Consensus 219 ~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G~vla 259 (302)
T cd07569 219 MQAGAYQNGTWVVAAAKAGMEDGCDLIGGSCIVAPTGEIVA 259 (302)
T ss_pred HhhhhhcccceEEEeeccccCCCceEecceEEECCCCCEEE
Confidence 34456778999886532 1123345566788999999863
No 107
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=45.40 E-value=49 Score=28.13 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEE
Q 022174 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIA 107 (301)
Q Consensus 28 ~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~ 107 (301)
+-+-.|.+|..-++++++|=| +.+.+.++.. ++.++.++++|++--+.+++..--.--...-+..+
T Consensus 142 qQRVAIARALaM~P~vmLFDE------PTSALDPElv--------~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadrvi 207 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDE------PTSALDPELV--------GEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVI 207 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecC------CcccCCHHHH--------HHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEE
Confidence 344567778888999999999 2222333332 26789999999885344444321011124566777
Q ss_pred EEcCCCCeecccc
Q 022174 108 IIDADGSDLGLYR 120 (301)
Q Consensus 108 ~i~~~G~i~~~~~ 120 (301)
++ .+|.++....
T Consensus 208 Fm-d~G~iie~g~ 219 (240)
T COG1126 208 FM-DQGKIIEEGP 219 (240)
T ss_pred Ee-eCCEEEEecC
Confidence 77 4887765443
No 108
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=44.73 E-value=33 Score=29.84 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEE
Q 022174 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNS 105 (301)
Q Consensus 27 ~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~ 105 (301)
++-+-+|++|..++++++++=|=. ..+ +...+ -+.++.+++++++.++++++-.-.-. --++-..
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPT------s~L-----Di~~Q---~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~ 208 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPT------SHL-----DIAHQ---IEVLELLRDLNREKGLTVVMVLHDLNLAARYADH 208 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCc------ccc-----CHHHH---HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 355567888999999999999921 111 11111 26789999999998998887753221 1234444
Q ss_pred EEEEcCCCCeec
Q 022174 106 IAIIDADGSDLG 117 (301)
Q Consensus 106 ~~~i~~~G~i~~ 117 (301)
.+++ .+|+++.
T Consensus 209 ~i~l-k~G~i~a 219 (258)
T COG1120 209 LILL-KDGKIVA 219 (258)
T ss_pred EEEE-ECCeEEe
Confidence 5566 6888753
No 109
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=44.25 E-value=1.2e+02 Score=24.12 Aligned_cols=75 Identities=19% Similarity=0.136 Sum_probs=40.0
Q ss_pred EEEEEecccC------CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHH
Q 022174 10 VVSALQFACT------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (301)
Q Consensus 10 kia~~Q~~~~------~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (301)
.+.++.+.+. .+.++..+.+.+++++++..+++++++.-....+. ........+.. ..+-+.++++|
T Consensus 69 d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~~~~--~~~~~~~~~~~-----~~~n~~l~~~a 141 (185)
T cd01832 69 DLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPDPAVL--EPFRRRVRARL-----AAYNAVIRAVA 141 (185)
T ss_pred CEEEEeccccccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCcccc--chhHHHHHHHH-----HHHHHHHHHHH
Confidence 4555555441 24455666667777777777888888743222011 11111111111 14567888999
Q ss_pred HHhCcEEe
Q 022174 84 KELGVVMP 91 (301)
Q Consensus 84 ~~~~i~iv 91 (301)
+++++.++
T Consensus 142 ~~~~v~~v 149 (185)
T cd01832 142 ARYGAVHV 149 (185)
T ss_pred HHcCCEEE
Confidence 88876654
No 110
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=42.78 E-value=35 Score=27.27 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=16.9
Q ss_pred eeEEEEEEcCCCCeecccccccC
Q 022174 102 HYNSIAIIDADGSDLGLYRKSHI 124 (301)
Q Consensus 102 ~yN~~~~i~~~G~i~~~~~K~~l 124 (301)
.--+.++||++|.|...+++...
T Consensus 119 ~~R~TfvId~dG~I~~~~~~v~~ 141 (157)
T COG1225 119 IERSTFVIDPDGKIRYVWRKVKV 141 (157)
T ss_pred ccceEEEECCCCeEEEEecCCCC
Confidence 44567999999998877766553
No 111
>PRK10799 metal-binding protein; Provisional
Probab=42.69 E-value=88 Score=26.90 Aligned_cols=57 Identities=11% Similarity=-0.063 Sum_probs=34.7
Q ss_pred EEEEeccCCcHHHHHHHHHCCCcEEE--eecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEE
Q 022174 154 GVAICWDQWFPEAARAMVLQGAEILF--YPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVA 216 (301)
Q Consensus 154 g~~IC~D~~~pe~~~~~~~~gadlil--~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~ 216 (301)
++++|-|. .++..+.+..+|+|+|+ +|..|.. ......+. ..-....++++++.++.
T Consensus 37 ~I~~alD~-t~~vi~~A~~~~~dlIitHHP~~~~~--~~~~~~~~---~~~~~~~li~~~i~vy~ 95 (247)
T PRK10799 37 KIVTGVTA-SQALLDEAVRLQADAVIVHHGYFWKG--ESPVIRGM---KRNRLKTLLANDINLYG 95 (247)
T ss_pred EEEEEeCC-CHHHHHHHHHCCCCEEEECCchhccC--CCccccch---HHHHHHHHHHCCCeEEE
Confidence 67789998 56777999999999999 4554422 11111111 11223357778876654
No 112
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=42.37 E-value=1.5e+02 Score=27.84 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhCcEEe-eeeeecCCC--------eeeEEEEEE
Q 022174 74 PTILKMQELAKELGVVMP-VSFFEEANN--------AHYNSIAII 109 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv-~G~~~~~~~--------~~yN~~~~i 109 (301)
+....|.++|+..+++++ +|+..++|. +.-.+.+.|
T Consensus 197 e~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLEHmVDtVlyF 241 (456)
T COG1066 197 EVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRVLEHMVDTVLYF 241 (456)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEEcccccccCchheeeeeeEEEEE
Confidence 466889999999999887 688887763 677888887
No 113
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=41.18 E-value=69 Score=26.13 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhC--CCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeee
Q 022174 23 STNLATAERLVRAAHGK--GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (301)
Q Consensus 23 ~~n~~~~~~~i~~A~~~--~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G 93 (301)
+...+.+.+.+++.++. +..+++|||..-.- ..-.....++|++.++.+.--
T Consensus 85 ~~d~~~i~~~~~~l~~~~~~~~lviFPEGTr~~-------------------~~~~~~~~~~a~k~~~p~l~~ 138 (193)
T cd07990 85 EKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFT-------------------EEKKERSQEFAEKNGLPPLKH 138 (193)
T ss_pred HHhHHHHHHHHHHHhcCCCCcEEEEeCcccCCC-------------------HHHHHHHHHHHHHcCCCCcce
Confidence 34455666666666554 77899999953211 122334457788877776643
No 114
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=40.65 E-value=91 Score=26.57 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=37.6
Q ss_pred HHHHHHHCCCcEEEeecccCCCCCCCCCCc-----HHHHHHHhhhhHhcCcceEEEecCccccccccccCCcceeeecce
Q 022174 166 AARAMVLQGAEILFYPTAIGSEPQDDGLDS-----RDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNS 240 (301)
Q Consensus 166 ~~~~~~~~gadlil~p~~~~~~~~~~~~~~-----~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S 240 (301)
..+.+.. |+|+++.|-.+.. +|...... ........+..|.++++.++. ...-.. + -.++-.+
T Consensus 25 ~i~~a~~-gadlvvfPE~~l~-g~~~~~~~~~~~~~~~~~~~l~~la~~~~i~i~~-~~~~~~------~---~~~yNs~ 92 (252)
T cd07575 25 KIEQLKE-KTDLIVLPEMFTT-GFSMNAEALAEPMNGPTLQWMKAQAKKKGAAITG-SLIIKE------G---GKYYNRL 92 (252)
T ss_pred HHHHhhc-CCCEEEeCCcCcC-CCCccHHHhhcccCChHHHHHHHHHHHCCeEEEE-EEEEcc------C---CceEEEE
Confidence 3444554 9999999997543 12111000 112233456678889876652 221100 1 1234456
Q ss_pred EEECCCCccc
Q 022174 241 FIAGPTGEIV 250 (301)
Q Consensus 241 ~i~~p~G~~l 250 (301)
.+++|+|.+.
T Consensus 93 ~~i~~~G~i~ 102 (252)
T cd07575 93 YFVTPDGEVY 102 (252)
T ss_pred EEECCCCCEE
Confidence 6677888654
No 115
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.37 E-value=51 Score=23.67 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=18.4
Q ss_pred CChhHHHHHHHHHHhCcEEeee
Q 022174 72 DHPTILKMQELAKELGVVMPVS 93 (301)
Q Consensus 72 ~~~~~~~l~~~a~~~~i~iv~G 93 (301)
++.....+++.|+++++.++..
T Consensus 60 sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 60 SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred ChHHHHHHHHHHHHcCCcEEEE
Confidence 3567889999999999998865
No 116
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=39.70 E-value=2.1e+02 Score=24.44 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeee-ee-cCCCeeeE
Q 022174 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF-FE-EANNAHYN 104 (301)
Q Consensus 27 ~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~-~~-~~~~~~yN 104 (301)
+.+.+.+++++ +++|+||.==.+ |.... ..+ .+....+.+...+.|+-+|+|. +. ..+-..|+
T Consensus 171 ~~i~~~i~~~r-~~~D~vIv~~Hw--G~e~~-----------~~p-~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y~ 235 (250)
T PF09587_consen 171 ERIKEDIREAR-KKADVVIVSLHW--GIEYE-----------NYP-TPEQRELARALIDAGADIIIGHHPHVIQPVEIYK 235 (250)
T ss_pred HHHHHHHHHHh-cCCCEEEEEecc--CCCCC-----------CCC-CHHHHHHHHHHHHcCCCEEEeCCCCcccceEEEC
Confidence 78889999988 689997653333 21111 011 2455666666667799999885 21 12334555
Q ss_pred EEEEEcCCCCe
Q 022174 105 SIAIIDADGSD 115 (301)
Q Consensus 105 ~~~~i~~~G~i 115 (301)
...++-.=|..
T Consensus 236 ~~~I~YSLGNf 246 (250)
T PF09587_consen 236 GKPIFYSLGNF 246 (250)
T ss_pred CEEEEEeCccc
Confidence 54444334443
No 117
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=39.12 E-value=1.5e+02 Score=24.58 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEE
Q 022174 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIA 107 (301)
Q Consensus 28 ~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~ 107 (301)
+-+..|.+|.+-.+++++|-| +...+.++.. ++.+..++++|++-.+.+++..--.-....-|-.+
T Consensus 158 QQR~aIARaLameP~vmLFDE------PTSALDPElV--------gEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~ 223 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDE------PTSALDPELV--------GEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVI 223 (256)
T ss_pred HHHHHHHHHHhcCCceEeecC------CcccCCHHHH--------HHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheE
Confidence 344567777778889999988 2222222222 36789999999998887777642111112333444
Q ss_pred EEcCCCCe
Q 022174 108 IIDADGSD 115 (301)
Q Consensus 108 ~i~~~G~i 115 (301)
++ .+|.|
T Consensus 224 fL-h~G~i 230 (256)
T COG4598 224 FL-HQGKI 230 (256)
T ss_pred Ee-eccee
Confidence 44 56644
No 118
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=39.01 E-value=1.7e+02 Score=25.00 Aligned_cols=62 Identities=8% Similarity=-0.040 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCcc-chHHHhhcCCCCCChhHHHHHHHHHHhCcEEee
Q 022174 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-REDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (301)
.+...+.+.+.++.|++-|+..|+.|= |...... ..+.++... ..+..+.+.|+++|+.+.+
T Consensus 80 ~~~~~~~~~~~i~~a~~lga~~i~~~~----g~~~~~~~~~~~~~~~~-----~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 80 EEEFRDGVAAAIRYARALGNKKINCLV----GKTPAGFSSEQIHATLV-----ENLRYAANMLMKEDILLLI 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECC----CCCCCCCCHHHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 355677889999999999999877542 2211111 122222221 4567778888888888766
No 119
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=38.93 E-value=1.4e+02 Score=23.76 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=41.2
Q ss_pred EEEEEecccC-----CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHH
Q 022174 10 VVSALQFACT-----DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (301)
Q Consensus 10 kia~~Q~~~~-----~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (301)
.+.++++... ...++..+.+.++++.+++.++.+|+.--.....+............. ..+-+.++++|+
T Consensus 61 d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~-----~~~n~~~~~~a~ 135 (183)
T cd04501 61 AVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKL-----KSLNRWLKDYAR 135 (183)
T ss_pred CEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHH-----HHHHHHHHHHHH
Confidence 5667776551 245666777777777777788887775321111110000000000111 245677888998
Q ss_pred HhCcEEe
Q 022174 85 ELGVVMP 91 (301)
Q Consensus 85 ~~~i~iv 91 (301)
+.++.++
T Consensus 136 ~~~v~~v 142 (183)
T cd04501 136 ENGLLFL 142 (183)
T ss_pred HcCCCEE
Confidence 8776655
No 120
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=38.88 E-value=1.7e+02 Score=25.71 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEee
Q 022174 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (301)
..+|++.+.++++...+++..+.=++---+|.........++.+.+. +.++.+.++++++++-+.+
T Consensus 40 ~~~Nl~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~-----~~l~~iG~~~~~~~iRls~ 105 (275)
T PF03851_consen 40 ARQNLEDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFA-----EELAEIGDLAKENGIRLSM 105 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHH-----HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHH-----HHHHHHHHHHHHcCCeEEe
Confidence 57899999999999999988887666444443333222223333332 6788999999999998865
No 121
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=38.73 E-value=2.4e+02 Score=23.86 Aligned_cols=63 Identities=6% Similarity=-0.038 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeee
Q 022174 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (301)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G 93 (301)
++..+.+.+.|+.|++-|+..|.++-...++ .....+.++... +.++.+.+.|+++|+.+.+=
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~---~~~~~~~~~~~~-----~~l~~l~~~A~~~gi~l~lE 142 (254)
T TIGR03234 80 EEFREGVALAIAYARALGCPQVNCLAGKRPA---GVSPEEARATLV-----ENLRYAADALDRIGLTLLIE 142 (254)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECcCCCCC---CCCHHHHHHHHH-----HHHHHHHHHHHhcCCEEEEE
Confidence 3446778888999999999988654222111 001112222211 45677788899999887763
No 122
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=38.15 E-value=60 Score=29.34 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=44.0
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEee-eeeecCCCeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~-G~~~~~~~~~yN~~~~i~~ 111 (301)
+.+|.+.++|+++.-|.+.. ..|+-..+..+.|.++-++.+-+|++ .+-..+.-++=+...+. .
T Consensus 175 LARAla~~~~IlLMDEaFSA--------------LDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim-k 239 (386)
T COG4175 175 LARALANDPDILLMDEAFSA--------------LDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM-K 239 (386)
T ss_pred HHHHHccCCCEEEecCchhh--------------cChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe-c
Confidence 45567789999999995522 11111235667888888887666664 44322223566666777 7
Q ss_pred CCCeec
Q 022174 112 DGSDLG 117 (301)
Q Consensus 112 ~G~i~~ 117 (301)
+|+|+.
T Consensus 240 dG~ivQ 245 (386)
T COG4175 240 DGEIVQ 245 (386)
T ss_pred CCeEEE
Confidence 998863
No 123
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.24 E-value=1.7e+02 Score=26.33 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeee
Q 022174 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (301)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G 93 (301)
.+|++.+.++++...+++..+.=++--.+|.........++.+.+ .+.++.+.++|+++++.+.+-
T Consensus 48 ~~Nl~~l~~~L~~n~~~~I~f~RisS~l~P~ash~~~~~~~~~~~-----~~~l~~iG~~a~~~~iRLS~H 113 (312)
T TIGR00629 48 KANLRDTMKTLHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVTFA-----QKELREIGELAKTHQHRLTFH 113 (312)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEecCccccCcCcCchhhhhHHHHH-----HHHHHHHHHHHHHcCeEEEEC
Confidence 568888899999988888877655533344333222222233222 267788999999999988753
No 124
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=36.69 E-value=2.4e+02 Score=25.78 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=45.9
Q ss_pred ceEEEEEeccCCcHHHHHH-HHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccc
Q 022174 151 AKIGVAICWDQWFPEAARA-MVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGK 222 (301)
Q Consensus 151 ~~ig~~IC~D~~~pe~~~~-~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~ 222 (301)
.|+.++.+|--+.+++.+. +...|++=|+.-+. +. ...+...+..+ .++.+.|++|+++.++..
T Consensus 230 ~~V~ii~~ypG~~~~~i~~a~~~~g~~GiVie~~-G~-----G~~~~~~~~~i--~~~~~~gi~VV~sSr~~~ 294 (351)
T COG0252 230 PKVVIIKYYPGLSSSLIDSALLSSGAKGLVLEGT-GS-----GNVTPALIESI--ERASKRGIPVVYSSRCLS 294 (351)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHhcCCCEEEEEEE-CC-----CCCChHHHHHH--HHHHHCCCeEEEEeccCC
Confidence 6899999999999988775 56789998887553 11 11223333333 368889999999998763
No 125
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=36.09 E-value=1.5e+02 Score=24.81 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCeec
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLG 117 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~ 117 (301)
...+.|.+++++.+..|++-+-..+.-...+..+++ .+|+++.
T Consensus 183 ~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l-~~G~i~~ 225 (233)
T PRK11629 183 SIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM-RDGRLTA 225 (233)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEE-ECCEEEE
Confidence 345666666655455555443211111123455666 4788754
No 126
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=35.84 E-value=2.3e+02 Score=23.76 Aligned_cols=42 Identities=10% Similarity=0.186 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..+++-+-..+.-..-+..+++ .+|+++
T Consensus 170 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l-~~G~i~ 211 (236)
T TIGR03864 170 AIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVL-HRGRVL 211 (236)
T ss_pred HHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEE-eCCeEE
Confidence 455677777765455555443222111235666777 478775
No 127
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=35.77 E-value=51 Score=28.40 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=46.9
Q ss_pred HHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEc
Q 022174 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIID 110 (301)
Q Consensus 32 ~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~ 110 (301)
.|.+|..+++++|+-=|=. . ...|......++.|++++++.|+++++..-..+ -.++...++-+
T Consensus 157 aIARaL~Q~pkiILADEPv------a--------sLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl- 221 (258)
T COG3638 157 AIARALVQQPKIILADEPV------A--------SLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGL- 221 (258)
T ss_pred HHHHHHhcCCCEEecCCcc------c--------ccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEe-
Confidence 4677777899999988822 1 122223346789999999999999999863222 22455555666
Q ss_pred CCCCee
Q 022174 111 ADGSDL 116 (301)
Q Consensus 111 ~~G~i~ 116 (301)
.+|+++
T Consensus 222 ~~G~iv 227 (258)
T COG3638 222 KAGRIV 227 (258)
T ss_pred cCCcEE
Confidence 578764
No 128
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=35.41 E-value=2.8e+02 Score=23.61 Aligned_cols=75 Identities=11% Similarity=-0.007 Sum_probs=46.9
Q ss_pred ceeEEeCCceEEEEEeccCCc-----------------------------HHH---HHHHHHCCCcEEEeecccCCCCCC
Q 022174 143 FKVFQTKFAKIGVAICWDQWF-----------------------------PEA---ARAMVLQGAEILFYPTAIGSEPQD 190 (301)
Q Consensus 143 ~~~~~~~~~~ig~~IC~D~~~-----------------------------pe~---~~~~~~~gadlil~p~~~~~~~~~ 190 (301)
+.+++.++.|||++-+.+... +.+ .+.+. +++|++++..-|+.+ +.
T Consensus 121 p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e-~~ 198 (250)
T PF09587_consen 121 PAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIE-YE 198 (250)
T ss_pred eEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCC-CC
Confidence 578888899999887776540 222 23333 679999999988752 22
Q ss_pred CCCCcHHHHHHHhhhhHhcCcceEEEecCccc
Q 022174 191 DGLDSRDHWRRVMQGHAGANVVPLVASNRIGK 222 (301)
Q Consensus 191 ~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~ 222 (301)
..+.+....+.+ ..++.|+-+|..++...
T Consensus 199 --~~p~~~q~~~a~-~lidaGaDiIiG~HpHv 227 (250)
T PF09587_consen 199 --NYPTPEQRELAR-ALIDAGADIIIGHHPHV 227 (250)
T ss_pred --CCCCHHHHHHHH-HHHHcCCCEEEeCCCCc
Confidence 222333333333 45678999988876543
No 129
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=34.53 E-value=1.9e+02 Score=23.96 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+.-...+..+++ .+|+++
T Consensus 179 ~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l-~~G~i~ 220 (221)
T TIGR02211 179 IIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEM-KDGQLF 220 (221)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEE-eCCEec
Confidence 345667777665455554443211111224677777 477654
No 130
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=34.41 E-value=2e+02 Score=24.77 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=34.7
Q ss_pred EEEEeccCCcHHHHHHHHHCCCcEEE--eecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEe
Q 022174 154 GVAICWDQWFPEAARAMVLQGAEILF--YPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVAS 217 (301)
Q Consensus 154 g~~IC~D~~~pe~~~~~~~~gadlil--~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~ 217 (301)
++++|-|. .++..+.+..+|+|+|+ +|..|. |...-..... -.. ...++++++.|.++
T Consensus 38 ~I~~alD~-t~~vi~~Ai~~~~dlIitHHP~~f~--~~~~~~~~~~-~~~--~~~li~~~I~vy~~ 97 (249)
T TIGR00486 38 KVVVAVDA-SESVADEAVRLGADLIITHHPLIWK--PLKRLIRGIK-PGR--LKILLQNDISLYSA 97 (249)
T ss_pred EEEEEecC-CHHHHHHHHHCCCCEEEEcCccccC--CcccccCCCH-HHH--HHHHHHCCCeEEEe
Confidence 57789998 56777888899999999 565542 2111111111 111 23477888777543
No 131
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=34.35 E-value=1.8e+02 Score=24.44 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=36.6
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~ 111 (301)
+..|...+++++++=|-. ........ ....+.|.+++++.+..|++-+-..+. ..+.+..+++ .
T Consensus 125 la~al~~~p~lllLDEPt------~gLD~~~~--------~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l-~ 189 (230)
T TIGR01184 125 IARALSIRPKVLLLDEPF------GALDALTR--------GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML-T 189 (230)
T ss_pred HHHHHHcCCCEEEEcCCC------cCCCHHHH--------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE-e
Confidence 333444577788877722 11111111 145567777777656655554322211 2355677777 4
Q ss_pred CCCee
Q 022174 112 DGSDL 116 (301)
Q Consensus 112 ~G~i~ 116 (301)
+|+++
T Consensus 190 ~G~i~ 194 (230)
T TIGR01184 190 NGPAA 194 (230)
T ss_pred CCcEe
Confidence 88875
No 132
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=34.01 E-value=1.2e+02 Score=26.79 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=44.4
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeee-eecCCCeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF-FEEANNAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~-~~~~~~~~yN~~~~i~~ 111 (301)
|..|...+++++++=|=. ..+.+... ....+.|++++++.+..|++.+ ...+-..+.+..+++ .
T Consensus 147 ia~aL~~~P~lliLDEPt------~GLDp~~~--------~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il-~ 211 (293)
T COG1131 147 IALALLHDPELLILDEPT------SGLDPESR--------REIWELLRELAKEGGVTILLSTHILEEAEELCDRVIIL-N 211 (293)
T ss_pred HHHHHhcCCCEEEECCCC------cCCCHHHH--------HHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEE-e
Confidence 444555788999999922 22222222 2677899999998866666654 222222346777788 6
Q ss_pred CCCeeccc
Q 022174 112 DGSDLGLY 119 (301)
Q Consensus 112 ~G~i~~~~ 119 (301)
+|+++..-
T Consensus 212 ~G~~~~~g 219 (293)
T COG1131 212 DGKIIAEG 219 (293)
T ss_pred CCEEEEeC
Confidence 89886543
No 133
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=33.86 E-value=1.3e+02 Score=23.51 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=40.3
Q ss_pred EEEEEecccC-----CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHH
Q 022174 10 VVSALQFACT-----DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (301)
Q Consensus 10 kia~~Q~~~~-----~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (301)
.+.++++... .+.++..+.+.++++.+++.++.+++..=. .+.. ....+. ..+.+.++++|+
T Consensus 66 d~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~-~~~~----~~~~~~--------~~~~~~~~~~a~ 132 (177)
T cd01822 66 DLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQ-APPN----YGPRYT--------RRFAAIYPELAE 132 (177)
T ss_pred CEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCc----cchHHH--------HHHHHHHHHHHH
Confidence 4555555541 245667777778888887778888875210 1110 001111 256678888999
Q ss_pred HhCcEEe
Q 022174 85 ELGVVMP 91 (301)
Q Consensus 85 ~~~i~iv 91 (301)
++++.++
T Consensus 133 ~~~~~~~ 139 (177)
T cd01822 133 EYGVPLV 139 (177)
T ss_pred HcCCcEe
Confidence 8887654
No 134
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=33.73 E-value=1.2e+02 Score=20.64 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCcEEEecccc-cCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEee
Q 022174 30 ERLVRAAHGKGANIILIQELF-EGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (301)
Q Consensus 30 ~~~i~~A~~~~~dlvvfPE~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (301)
..+++.|.+ +.+.||+..+. +.+... .....+.+......-..+...|...|.++|+.++.
T Consensus 14 ~~iv~~~~~-~~~~Ivie~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~yka~~~Gi~v~~ 75 (82)
T TIGR01766 14 KQIVEYAKE-NNGTIVLEDLKNIKEMVD-KKSKYLRRKLHQWSFRKLISKIKYKAEEYGIEVIE 75 (82)
T ss_pred HHHHHHHHH-cCCEEEECCccchhhhcc-hhhHHHHHHHHhhhHHHHHHHHHHHHHHcCCeEEE
Confidence 455666777 77999998866 333210 01111222222222236788999999999998875
No 135
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=33.68 E-value=1.5e+02 Score=26.01 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcc
Q 022174 20 DDVSTNLATAERLVRAAHGKGANIILIQELFEGYY 54 (301)
Q Consensus 20 ~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~ 54 (301)
...++.++.+.+.++.|++.|..+.+-+|.+.++|
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~ 142 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM 142 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC
Confidence 46789999999999999999999999999755554
No 136
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=33.59 E-value=2.3e+02 Score=25.63 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=45.6
Q ss_pred ceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcH-HHHHHHhhhhHhcCcceEEEecCccc
Q 022174 151 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSR-DHWRRVMQGHAGANVVPLVASNRIGK 222 (301)
Q Consensus 151 ~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~-~~~~~~~~~~A~e~~~~vv~~n~~G~ 222 (301)
.++.++-|+=-..+++.+.+...|++=|+.-.. +. ...+. +.|... -.++.+.|++|+.+++++.
T Consensus 210 ~~V~ii~~~pG~~~~~l~~~~~~~~~GiVl~~~-G~-----Gn~p~~~~~~~~-l~~~~~~Gi~VV~~Sr~~~ 275 (335)
T PRK09461 210 QPIGVVTIYPGISAEVVRNFLRQPVKALILRSY-GV-----GNAPQNPALLQE-LKEASERGIVVVNLTQCMS 275 (335)
T ss_pred CcEEEEEecCCCCHHHHHHHHhCCCCEEEEccC-CC-----CCCCCCHHHHHH-HHHHHHCCCEEEEeCCCCC
Confidence 468888888888899988888888887776543 21 11121 334443 3368889999999999874
No 137
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=33.36 E-value=1.9e+02 Score=24.12 Aligned_cols=42 Identities=5% Similarity=0.117 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCe
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i 115 (301)
...+.|.+++++.+..|++-+-..+.-...+..+++++++..
T Consensus 175 ~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~ 216 (225)
T PRK10247 175 NVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGE 216 (225)
T ss_pred HHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccch
Confidence 345666777766555555443221111236677788655443
No 138
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.15 E-value=1.7e+02 Score=24.48 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+ -..+.+..+++ .+|+++
T Consensus 182 ~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l-~~G~i~ 224 (241)
T cd03256 182 QVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGL-KDGRIV 224 (241)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 4556777777665655555432211 12356777788 478765
No 139
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=33.07 E-value=1.2e+02 Score=22.85 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=23.8
Q ss_pred HHHHHHHHhCcEEeeeeeecCCCe---eeEEEEEEcCCCCeecccc
Q 022174 78 KMQELAKELGVVMPVSFFEEANNA---HYNSIAIIDADGSDLGLYR 120 (301)
Q Consensus 78 ~l~~~a~~~~i~iv~G~~~~~~~~---~yN~~~~i~~~G~i~~~~~ 120 (301)
....+++.+++...-..... .+. .-.+.++||++|+|+..|+
T Consensus 97 ~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 97 EIEALAKAFGVYYEKVPEDD-GDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHHHHHHHhcEEEEecCCCC-CceeEeccceEEEECCCCCEEEeec
Confidence 34566677766544221100 011 1236899999999987664
No 140
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=32.91 E-value=2.1e+02 Score=21.45 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=52.6
Q ss_pred eeeeecCCCeeeEEEEEEcCCCCeecccccccC-CCCCC----C-Cc-ceeecCCCCCceeEEeCCceEEEEEeccCCcH
Q 022174 92 VSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI-PDGPG----Y-QE-KFYFNPGDTGFKVFQTKFAKIGVAICWDQWFP 164 (301)
Q Consensus 92 ~G~~~~~~~~~yN~~~~i~~~G~i~~~~~K~~l-~~~~~----~-~e-~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~p 164 (301)
+|.+. .+|+-|+.-++|.++|++- ++.|-.- --+++ . +| +.++..+. .++-..-|-.|.+-- .+
T Consensus 9 FG~v~-i~Gk~f~~DIvi~~dG~v~-rr~K~lskrK~GTSHkl~~eEle~~lee~~---E~ivvGTG~~G~l~l----~~ 79 (121)
T COG1504 9 FGSVT-IGGKDFEHDIVIRPDGKVE-RREKELSKRKYGTSHKLALEELEELLEEGP---EVIVVGTGQSGMLEL----SE 79 (121)
T ss_pred eeeEE-ECCEeccccEEEecCCcee-hhhhhhhhhhcCcccccCHHHHHHHHhcCC---cEEEEecCceeEEEe----CH
Confidence 45544 3678899999999999873 4444321 01110 0 11 12344443 234444344444322 45
Q ss_pred HHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHh
Q 022174 165 EAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVM 203 (301)
Q Consensus 165 e~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~ 203 (301)
+.......+++.+++.|+. +....|..+.
T Consensus 80 ea~e~~r~k~~~vi~~pT~----------EAikr~nel~ 108 (121)
T COG1504 80 EAREFFRKKGCEVIELPTP----------EAIKRYNELR 108 (121)
T ss_pred HHHHHHHhcCCeEEEeCCH----------HHHHHHHHHh
Confidence 5555566789999999997 3467777664
No 141
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=32.49 E-value=1.7e+02 Score=27.00 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=39.2
Q ss_pred EEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCC-----------------CCcHHHHHHHhh----hhHhcCcce
Q 022174 155 VAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDG-----------------LDSRDHWRRVMQ----GHAGANVVP 213 (301)
Q Consensus 155 ~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~-----------------~~~~~~~~~~~~----~~A~e~~~~ 213 (301)
++|| |...|+-..+++++ +.+|+|... ||... -.+..+|-..++ .+|.|+|+|
T Consensus 66 i~i~-D~~n~~Sl~emak~-~~vivN~vG----PyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVY 139 (423)
T KOG2733|consen 66 ILIA-DSANEASLDEMAKQ-ARVIVNCVG----PYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVY 139 (423)
T ss_pred EEEe-cCCCHHHHHHHHhh-hEEEEeccc----cceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeE
Confidence 4444 77778877778765 999998765 33111 112355666554 389999999
Q ss_pred EEEecCc
Q 022174 214 LVASNRI 220 (301)
Q Consensus 214 vv~~n~~ 220 (301)
|+.|...
T Consensus 140 IVsaCGf 146 (423)
T KOG2733|consen 140 IVSACGF 146 (423)
T ss_pred EEeeccc
Confidence 9977643
No 142
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=32.37 E-value=2.1e+02 Score=23.52 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHhCcEEee-eeeecCCCeeeEEEEEEcCCCC
Q 022174 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGS 114 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~-G~~~~~~~~~yN~~~~i~~~G~ 114 (301)
...+.|.+++++.+..|++ ......- .+.+..+++ .+|+
T Consensus 178 ~l~~~l~~~~~~~~~tii~~sH~~~~~-~~~d~v~~l-~~G~ 217 (218)
T cd03255 178 EVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIEL-RDGK 217 (218)
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHH-hhhcEEEEe-eCCc
Confidence 4556677776644555544 4322111 255666677 3564
No 143
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=32.30 E-value=90 Score=24.94 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=33.0
Q ss_pred EEEEEecccCCCHHHHHHHHHHHHHHHHhC--CCcEEEecccccCccc
Q 022174 10 VVSALQFACTDDVSTNLATAERLVRAAHGK--GANIILIQELFEGYYF 55 (301)
Q Consensus 10 kia~~Q~~~~~~~~~n~~~~~~~i~~A~~~--~~dlvvfPE~~l~g~~ 55 (301)
||+++|+...++.+ ...++-+.|.+|.+. =-+|++.|--...+|.
T Consensus 1 Kv~ivQ~pYlGd~~-a~r~mGerIGRaaQ~FEV~eLiiap~~~vda~e 47 (173)
T PF14419_consen 1 KVVIVQMPYLGDLK-ACRKMGERIGRAAQAFEVKELIIAPKEKVDAYE 47 (173)
T ss_pred CeeEEeccccCCHH-HHHHHHHHHhHHHhhcchheEEEeccCccCHHH
Confidence 68999999988754 456677777777663 2478999987666653
No 144
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=32.30 E-value=1.3e+02 Score=24.60 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCe
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSD 115 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i 115 (301)
...+.|.+++++ +..+++-+-..+ -..+.+..+++ .+|++
T Consensus 164 ~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l-~~G~i 204 (205)
T cd03226 164 RVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLL-ANGAI 204 (205)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE-ECCEE
Confidence 345566666544 444444332111 11345666677 46764
No 145
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=32.26 E-value=1.8e+02 Score=23.92 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCcEEEecccccC
Q 022174 27 ATAERLVRAAHGKGANIILIQELFEG 52 (301)
Q Consensus 27 ~~~~~~i~~A~~~~~dlvvfPE~~l~ 52 (301)
+.+.+.+.++.++|-.+++|||-.-+
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtrs 113 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTRS 113 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCCC
Confidence 34455566677789999999997644
No 146
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=32.07 E-value=1.9e+02 Score=24.05 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+.-...+..+++ .+|+++
T Consensus 184 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l-~~g~i~ 225 (228)
T PRK10584 184 KIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRL-VNGQLQ 225 (228)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCEEE
Confidence 455677777766555555443211111124556677 477764
No 147
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=31.71 E-value=2.4e+02 Score=21.69 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEec
Q 022174 22 VSTNLATAERLVRAAHGKGANIILIQ 47 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvfP 47 (301)
....+..+.+..++.+++++.+|-..
T Consensus 46 C~~~~~~l~~~~~~~~~~~v~vi~Is 71 (154)
T PRK09437 46 CTVQACGLRDNMDELKKAGVVVLGIS 71 (154)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 44555667777777777788887774
No 148
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=31.51 E-value=1.6e+02 Score=26.68 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=40.4
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~ 111 (301)
|.+|...+++++++=|-... ..+... ...++.|+++.++.+++|++-+-+.+. ..+.+..+++ .
T Consensus 151 IARAL~~~P~iLLlDEPts~------LD~~t~--------~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl-~ 215 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSA------LDPATT--------QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVI-S 215 (343)
T ss_pred HHHHHHhCCCEEEEeCCccc------CCHHHH--------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-E
Confidence 44455567788887773311 111111 245677888888777777765432221 1456777888 4
Q ss_pred CCCee
Q 022174 112 DGSDL 116 (301)
Q Consensus 112 ~G~i~ 116 (301)
+|+++
T Consensus 216 ~G~iv 220 (343)
T TIGR02314 216 NGELI 220 (343)
T ss_pred CCEEE
Confidence 88876
No 149
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.46 E-value=1.1e+02 Score=26.37 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=43.5
Q ss_pred hCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 38 GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 38 ~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
.-.+|++++=|.---| ...|.+ .+.+.+.++.++..+.|+++.-...=..+-|+++++ .+|++.
T Consensus 163 ~~~pdILllDEvlavG------D~~F~~--------K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l-~~G~i~ 226 (249)
T COG1134 163 HVEPDILLLDEVLAVG------DAAFQE--------KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWL-EHGQIR 226 (249)
T ss_pred hcCCCEEEEehhhhcC------CHHHHH--------HHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEE-eCCEEE
Confidence 3467888888855444 233444 567889999888878877875322112578889999 588764
No 150
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=31.46 E-value=2.2e+02 Score=23.02 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=40.8
Q ss_pred EEEEEecccC-----CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHH
Q 022174 10 VVSALQFACT-----DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (301)
Q Consensus 10 kia~~Q~~~~-----~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (301)
.+.++++.+. .+.++..+.+.++++++++.++++++++- .++... ...+. ..+.+.++++|+
T Consensus 73 d~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~-~~P~~~----~~~~~--------~~~~~~~~~~a~ 139 (191)
T PRK10528 73 RWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQI-RLPANY----GRRYN--------EAFSAIYPKLAK 139 (191)
T ss_pred CEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEe-ecCCcc----cHHHH--------HHHHHHHHHHHH
Confidence 5666776662 24666677777778877777888877631 111110 01111 134466788899
Q ss_pred HhCcEEe
Q 022174 85 ELGVVMP 91 (301)
Q Consensus 85 ~~~i~iv 91 (301)
++++..+
T Consensus 140 ~~~v~~i 146 (191)
T PRK10528 140 EFDIPLL 146 (191)
T ss_pred HhCCCcc
Confidence 9886654
No 151
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=31.11 E-value=2.1e+02 Score=24.65 Aligned_cols=63 Identities=19% Similarity=0.124 Sum_probs=33.6
Q ss_pred HHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee-cC-----CCeeeEEEE
Q 022174 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-----NNAHYNSIA 107 (301)
Q Consensus 34 ~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~-----~~~~yN~~~ 107 (301)
+.+..+|+|+|+.|-....... . ..+...++..|.+++++++..... .. +...+-.+.
T Consensus 163 r~l~~~ga~ii~~ps~~~~~~~-------~---------~~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S~ 226 (280)
T cd07574 163 RALAEAGADLLLVPSCTDTRAG-------Y---------WRVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQAA 226 (280)
T ss_pred HHHHHcCCCEEEECCcCCcccc-------H---------HHHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccccce
Confidence 4445679999999864321100 0 022233566677889998855321 11 112334456
Q ss_pred EEcCC
Q 022174 108 IIDAD 112 (301)
Q Consensus 108 ~i~~~ 112 (301)
+++|.
T Consensus 227 i~~P~ 231 (280)
T cd07574 227 VYTPC 231 (280)
T ss_pred eecCC
Confidence 77775
No 152
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=31.05 E-value=1.7e+02 Score=23.03 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEE
Q 022174 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAI 108 (301)
Q Consensus 30 ~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~ 108 (301)
+-.+.+|...+++++++=|-.. .......+ ...+.|++++++ +..+++-+-..+ -....+..++
T Consensus 90 rl~laral~~~p~illlDEP~~------~LD~~~~~--------~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~~~~ 154 (163)
T cd03216 90 MVEIARALARNARLLILDEPTA------ALTPAEVE--------RLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTV 154 (163)
T ss_pred HHHHHHHHhcCCCEEEEECCCc------CCCHHHHH--------HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 3345556667899999988321 11111111 445666677554 555444332111 1234566777
Q ss_pred EcCCCCee
Q 022174 109 IDADGSDL 116 (301)
Q Consensus 109 i~~~G~i~ 116 (301)
+ .+|+++
T Consensus 155 l-~~g~i~ 161 (163)
T cd03216 155 L-RDGRVV 161 (163)
T ss_pred E-ECCEEE
Confidence 7 477764
No 153
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=30.99 E-value=1.6e+02 Score=22.04 Aligned_cols=19 Identities=26% Similarity=0.125 Sum_probs=14.1
Q ss_pred eeEEEEEEcCCCCeecccc
Q 022174 102 HYNSIAIIDADGSDLGLYR 120 (301)
Q Consensus 102 ~yN~~~~i~~~G~i~~~~~ 120 (301)
...+.++||++|+|+..+.
T Consensus 109 ~~p~~~lid~~g~i~~~~~ 127 (140)
T cd02971 109 AARATFIIDPDGKIRYVEV 127 (140)
T ss_pred eeEEEEEECCCCcEEEEEe
Confidence 4457899999999875544
No 154
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.57 E-value=1.9e+02 Score=25.23 Aligned_cols=42 Identities=7% Similarity=0.102 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+.-...+..+++ .+|+++
T Consensus 178 ~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l-~~G~i~ 219 (279)
T PRK13650 178 ELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVM-KNGQVE 219 (279)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCEEE
Confidence 456777888776566665543221111346677777 588875
No 155
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.49 E-value=1.9e+02 Score=25.15 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+.-...+..+++ .+|+++
T Consensus 181 ~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l-~~G~i~ 222 (282)
T PRK13640 181 QILKLIRKLKKKNNLTVISITHDIDEANMADQVLVL-DDGKLL 222 (282)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCEEE
Confidence 456777777776566655543211111245667777 588875
No 156
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=30.48 E-value=2.1e+02 Score=26.13 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=40.7
Q ss_pred CceEEEEEeccCCcHH--------HHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCc
Q 022174 150 FAKIGVAICWDQWFPE--------AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRI 220 (301)
Q Consensus 150 ~~~ig~~IC~D~~~pe--------~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~ 220 (301)
+--++-+||-|..|-+ +..-+.+.++|+++.-.++....|. ...-.++++..-+.++|++.+-..
T Consensus 48 ~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG------~acg~v~~aV~e~~~IP~vtaM~~ 120 (349)
T PF07355_consen 48 AEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYG------VACGEVAKAVQEKLGIPVVTAMYE 120 (349)
T ss_pred CEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHH------HHHHHHHHHHHHhhCCCEEEEecc
Confidence 3457999999999854 2223345689999987764332111 122345555666788999866543
No 157
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=30.13 E-value=1.4e+02 Score=23.65 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=22.3
Q ss_pred CCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEe
Q 022174 40 GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (301)
Q Consensus 40 ~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv 91 (301)
+..+++|||-.-+.. .++-.-...+|.+.++.|+
T Consensus 95 ~~~l~IFPEGtR~~~------------------~~fk~G~~~lA~~~~~PIv 128 (163)
T cd07988 95 EFVLAIAPEGTRSKV------------------DKWKTGFYHIARGAGVPIL 128 (163)
T ss_pred CcEEEEeCCCCCCCC------------------cChhhHHHHHHHHcCCCEE
Confidence 457999999654320 1333456677888888876
No 158
>smart00642 Aamy Alpha-amylase domain.
Probab=30.05 E-value=2.3e+02 Score=22.60 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCcEEEecccccCcc---cCCcc-chHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecC
Q 022174 27 ATAERLVRAAHGKGANIILIQELFEGYY---FCQAQ-REDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA 98 (301)
Q Consensus 27 ~~~~~~i~~A~~~~~dlvvfPE~~l~g~---~~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~ 98 (301)
+.+.+.+...++.|++.|.++=.+-.+. ..... ..++...-..+...+.++.|.+.|++.++.|++-..-.+
T Consensus 19 ~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 19 QGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 3444444455667999987766542221 00000 111212111222235677888888899999998765444
No 159
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=30.03 E-value=1.1e+02 Score=27.56 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhC
Q 022174 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (301)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (301)
+.+++++.+.++.+.+.+.|+++-|= +++|+. ++....+-++|++.+
T Consensus 238 dYdv~kvle~aE~i~~a~idvlIaPv-~lPG~N-----------------D~E~~~iIe~A~~iG 284 (414)
T COG2100 238 DYDVKKVLEVAEYIANAGIDVLIAPV-WLPGVN-----------------DDEMPKIIEWAREIG 284 (414)
T ss_pred ccCHHHHHHHHHHHHhCCCCEEEeee-ecCCcC-----------------hHHHHHHHHHHHHhC
Confidence 56677888888888888999999994 677753 245677888898876
No 160
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=29.87 E-value=1.5e+02 Score=24.54 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEe
Q 022174 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (301)
Q Consensus 24 ~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv 91 (301)
.+.+.+.+..+ +.++|-.++||||-..+..... + . .....++-.-...+|.+.++.|+
T Consensus 83 ~~~~~~~~~~~-~L~~G~~l~IFPEGtrs~~~~~-----~-g---~~~~~~fk~G~~~lA~~~~~pIv 140 (210)
T cd07986 83 KNRESLREALR-HLKNGGALIIFPAGRVSTASPP-----F-G---RVSDRPWNPFVARLARKAKAPVV 140 (210)
T ss_pred hhHHHHHHHHH-HHhCCCEEEEECCccccccccc-----C-C---ccccCCccHHHHHHHHHHCCCEE
Confidence 34444444444 4456779999999654422100 0 0 00001344566778888888877
No 161
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=29.85 E-value=1.5e+02 Score=25.15 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=37.8
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeee-eecCCCeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF-FEEANNAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~-~~~~~~~~yN~~~~i~~ 111 (301)
|.+|.-++++++||-|-+..- |. -.. ..+.+.++++ ++-+-.+++++ .-.+=..+-...+++ .
T Consensus 144 iARAlvh~P~i~vlDEP~sGL----Di--~~~--------r~~~dfi~q~-k~egr~viFSSH~m~EvealCDrvivl-h 207 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGL----DI--RTR--------RKFHDFIKQL-KNEGRAVIFSSHIMQEVEALCDRVIVL-H 207 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCc----cH--HHH--------HHHHHHHHHh-hcCCcEEEEecccHHHHHHhhheEEEE-e
Confidence 555666899999999944221 10 000 1344455444 34355555553 222222466777787 6
Q ss_pred CCCeec
Q 022174 112 DGSDLG 117 (301)
Q Consensus 112 ~G~i~~ 117 (301)
+|+++.
T Consensus 208 ~Gevv~ 213 (245)
T COG4555 208 KGEVVL 213 (245)
T ss_pred cCcEEE
Confidence 888764
No 162
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=29.66 E-value=2e+02 Score=21.90 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEec
Q 022174 22 VSTNLATAERLVRAAHGKGANIILIQ 47 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvfP 47 (301)
....+..+.++.++..+.++++|.+.
T Consensus 44 C~~~~~~l~~~~~~~~~~~v~vi~vs 69 (149)
T cd03018 44 CTKELCALRDSLELFEAAGAEVLGIS 69 (149)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 44556666666666666677777665
No 163
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.66 E-value=2.2e+02 Score=23.50 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcC-CCCeec
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDA-DGSDLG 117 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~-~G~i~~ 117 (301)
...+.|.++.++.+..|++-+-..+ -..+.+..++++. +|+++.
T Consensus 169 ~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 169 QLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 3456677776665555554432111 1235567777854 687753
No 164
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.65 E-value=2.5e+02 Score=23.04 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+ -..+.+..+++ .+|+++
T Consensus 168 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l-~~G~i~ 210 (213)
T cd03259 168 ELREELKELQRELGITTIYVTHDQEEALALADRIAVM-NEGRIV 210 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEE-ECCEEE
Confidence 4556677777655655554432211 12455667777 477764
No 165
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.53 E-value=1.9e+02 Score=23.87 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..+++-+-..+ -..+.+..+++ .+|+++
T Consensus 169 ~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l-~~G~i~ 211 (220)
T cd03265 169 HVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAII-DHGRII 211 (220)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-eCCEEE
Confidence 4556677777765655554432111 12345677777 588875
No 166
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=29.47 E-value=68 Score=26.40 Aligned_cols=25 Identities=24% Similarity=0.045 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCCcEEEeccccc
Q 022174 27 ATAERLVRAAHGKGANIILIQELFE 51 (301)
Q Consensus 27 ~~~~~~i~~A~~~~~dlvvfPE~~l 51 (301)
....+.+.++.++|-.++||||-..
T Consensus 97 ~~~~~~~~~~l~~G~~l~IFPEGtr 121 (203)
T cd07992 97 AAVFDAVGEALKAGGAIGIFPEGGS 121 (203)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 3344455556667889999999764
No 167
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.09 E-value=2.1e+02 Score=23.61 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..+++-+-..+ -..+.+..+++ .+|+++
T Consensus 169 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~ 211 (214)
T cd03297 169 QLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVM-EDGRLQ 211 (214)
T ss_pred HHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEE-ECCEEE
Confidence 4556777777765655554432111 11345666777 477764
No 168
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=29.08 E-value=73 Score=21.92 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=27.0
Q ss_pred cceEEEEEeccc--CCCHHHHHHHHHHHHHHHHhCCCcEE
Q 022174 7 REVVVSALQFAC--TDDVSTNLATAERLVRAAHGKGANII 44 (301)
Q Consensus 7 ~~~kia~~Q~~~--~~~~~~n~~~~~~~i~~A~~~~~dlv 44 (301)
+.+||++.+..- .-+.++..+.+.+.+..|...+..++
T Consensus 1 MeIkIGi~~~~REl~ies~~s~dev~~~v~~Al~~~~~~l 40 (74)
T PF11305_consen 1 MEIKIGIQNVARELVIESDQSADEVEAAVTDALADGSGVL 40 (74)
T ss_pred CeEEEeeecCCceEEEecCCCHHHHHHHHHHHHhCCCceE
Confidence 358999988875 34456667788888888877764443
No 169
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=28.71 E-value=1.7e+02 Score=24.27 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|++++++ .+.|++..-...-..+.+..+++ .+|+++
T Consensus 179 ~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l-~~G~i~ 219 (227)
T cd03260 179 KIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFL-LNGRLV 219 (227)
T ss_pred HHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEE-eCCEEE
Confidence 345666777665 34444443211112356777788 478765
No 170
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=28.53 E-value=1.9e+02 Score=23.85 Aligned_cols=39 Identities=8% Similarity=0.108 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHhCcEEe-eeeeecCCCeeeEEEEEEcCCCC
Q 022174 74 PTILKMQELAKELGVVMP-VSFFEEANNAHYNSIAIIDADGS 114 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv-~G~~~~~~~~~yN~~~~i~~~G~ 114 (301)
...+.|.+++++ +..|+ +..-...-..+.+..+++ .+|+
T Consensus 176 ~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l-~~G~ 215 (216)
T TIGR00960 176 DIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTL-SRGR 215 (216)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE-eCCc
Confidence 345666666544 44444 443211111345666666 3565
No 171
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.40 E-value=2.2e+02 Score=24.83 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.++.|++-+-..+.-...+..+++ .+|+++
T Consensus 178 ~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l-~~G~i~ 219 (279)
T PRK13635 178 EVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVM-NKGEIL 219 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEE-ECCEEE
Confidence 456777777776566655543211111235667777 478765
No 172
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=28.32 E-value=2.8e+02 Score=24.07 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+.-...+..+++ .+|+++
T Consensus 182 ~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l-~~G~i~ 223 (280)
T PRK13633 182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVM-DSGKVV 223 (280)
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEE-ECCEEE
Confidence 456777777766566655443221111225667777 478765
No 173
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=27.99 E-value=2.3e+02 Score=23.45 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+. ..+.+..+++ .+|+++
T Consensus 183 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l-~~G~i~ 225 (228)
T cd03257 183 QILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM-YAGKIV 225 (228)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE-eCCEEE
Confidence 45567777776645555544322111 1345677777 478764
No 174
>smart00037 CNX Connexin homologues. Connexin channels participate in the regulation of signaling between developing and differentiated cell types.
Probab=27.80 E-value=26 Score=20.00 Aligned_cols=9 Identities=56% Similarity=1.272 Sum_probs=7.6
Q ss_pred EeccCCcHH
Q 022174 157 ICWDQWFPE 165 (301)
Q Consensus 157 IC~D~~~pe 165 (301)
+|||..||.
T Consensus 22 vCyD~~fPi 30 (34)
T smart00037 22 VCYDQAFPI 30 (34)
T ss_pred eeccccccC
Confidence 699999984
No 175
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=27.78 E-value=2e+02 Score=23.69 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=33.0
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~ 111 (301)
+.+|...+++++++=|-. ........ ....+.|.+++++ +..+++-+-... -..+-+..+++ .
T Consensus 147 laral~~~p~illlDEPt------~~LD~~~~--------~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l-~ 210 (218)
T cd03266 147 IARALVHDPPVLLLDEPT------TGLDVMAT--------RALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVL-H 210 (218)
T ss_pred HHHHHhcCCCEEEEcCCC------cCCCHHHH--------HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEE-E
Confidence 333444577888887722 11111111 1455666776544 444444332111 11334566677 4
Q ss_pred CCCee
Q 022174 112 DGSDL 116 (301)
Q Consensus 112 ~G~i~ 116 (301)
+|+++
T Consensus 211 ~G~i~ 215 (218)
T cd03266 211 RGRVV 215 (218)
T ss_pred CCEEe
Confidence 78764
No 176
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.75 E-value=3.2e+02 Score=23.48 Aligned_cols=42 Identities=5% Similarity=0.119 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-....-...+..+++ .+|+++
T Consensus 180 ~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l-~~G~i~ 221 (269)
T PRK13648 180 NLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVM-NKGTVY 221 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEE-ECCEEE
Confidence 345666676665455554433211111235667777 478775
No 177
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.67 E-value=2.6e+02 Score=22.90 Aligned_cols=42 Identities=7% Similarity=0.076 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+ -..+.+..+++ .+|+++
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l-~~G~i~ 208 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFL-DNGRIA 208 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEE-ECCEEe
Confidence 4556777777665666555432211 12345677777 478764
No 178
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=27.63 E-value=94 Score=28.46 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCcEEEe-cccccCc
Q 022174 30 ERLVRAAHGKGANIILI-QELFEGY 53 (301)
Q Consensus 30 ~~~i~~A~~~~~dlvvf-PE~~l~g 53 (301)
..+++.|.+.++|+||. |||...|
T Consensus 103 e~Iv~~Aee~~aDLIVm~~~~~~~~ 127 (357)
T PRK12652 103 EVLIAYAEEHGIDRVVLDPEYNPGG 127 (357)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCC
Confidence 44567778888998666 7766554
No 179
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=27.46 E-value=2.6e+02 Score=23.11 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=34.2
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDAD 112 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~ 112 (301)
+.+|...+++++++=|-... ...... ....+.|+++.++.+..+++-+-..+--.+.+..+++ .+
T Consensus 152 laral~~~p~illlDEP~~~------LD~~~~--------~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l-~~ 216 (220)
T TIGR02982 152 IARALVHRPKLVLADEPTAA------LDSKSG--------RDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHM-ED 216 (220)
T ss_pred HHHHHhcCCCEEEEeCCCCc------CCHHHH--------HHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEE-EC
Confidence 34444556777777773321 111111 1446777777765455555443222212356666777 46
Q ss_pred CCe
Q 022174 113 GSD 115 (301)
Q Consensus 113 G~i 115 (301)
|++
T Consensus 217 g~~ 219 (220)
T TIGR02982 217 GKL 219 (220)
T ss_pred CEE
Confidence 654
No 180
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.35 E-value=2.5e+02 Score=24.35 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-....-..-+..+++ .+|+++
T Consensus 178 ~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l-~~G~i~ 219 (277)
T PRK13642 178 EIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVM-KAGEII 219 (277)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEE-ECCEEE
Confidence 456777777776566666543221111235667777 478765
No 181
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=27.30 E-value=2.3e+02 Score=24.57 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEE
Q 022174 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSI 106 (301)
Q Consensus 28 ~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~ 106 (301)
+-+-++++|...++||+++=|=+.. -| ..- ...+.+.|.++.++ +++|++-.-.-. =..+++..
T Consensus 145 ~QRV~lARAL~~~p~lllLDEP~~g----vD--~~~--------~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~v 209 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDEPFTG----VD--VAG--------QKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRV 209 (254)
T ss_pred HHHHHHHHHhccCCCEEEecCCccc----CC--HHH--------HHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEE
Confidence 3445788888899999999993321 11 111 12567888888888 888776542211 12466676
Q ss_pred EEE
Q 022174 107 AII 109 (301)
Q Consensus 107 ~~i 109 (301)
+++
T Consensus 210 i~L 212 (254)
T COG1121 210 ICL 212 (254)
T ss_pred EEE
Confidence 776
No 182
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=26.83 E-value=3e+02 Score=24.68 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=45.6
Q ss_pred ceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccc
Q 022174 151 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGK 222 (301)
Q Consensus 151 ~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~ 222 (301)
.++.++-++--..+++.+.+...|++=|+.-.. +. ...+ ..|....+ ++.+.+++|+.+++++.
T Consensus 212 ~~V~il~~~pG~~~~~l~~~~~~~~~GlVl~~~-G~-----Gn~p-~~~~~~l~-~a~~~gipVV~~sq~~~ 275 (323)
T smart00870 212 PKVAIVKAYPGMDAELLDALLDSGAKGLVLEGT-GA-----GNVP-PDLLEALK-EALERGIPVVRTSRCLN 275 (323)
T ss_pred CcEEEEEeCCCCCHHHHHHHHhCCCCEEEEEee-CC-----CCCC-HHHHHHHH-HHHHCCCEEEEeccCCC
Confidence 478999899988999888888888888776543 11 1112 23444333 67889999999999863
No 183
>PRK10908 cell division protein FtsE; Provisional
Probab=26.76 E-value=2e+02 Score=23.78 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++ +..+++-+-..+ -..+.+..+++ .+|+++
T Consensus 175 ~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~ 216 (222)
T PRK10908 175 GILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTL-SDGHLH 216 (222)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE-ECCEEc
Confidence 345666666554 444444332111 11344566777 477764
No 184
>PTZ00056 glutathione peroxidase; Provisional
Probab=26.69 E-value=3.6e+02 Score=22.16 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEec
Q 022174 22 VSTNLATAERLVRAAHGKGANIILIQ 47 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvfP 47 (301)
....+..+.++.++-.++|+.+|-++
T Consensus 54 C~~e~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 54 TKKHVDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred hHHHHHHHHHHHHHHhcCceEEEEec
Confidence 34455666666666666777777775
No 185
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.44 E-value=2.6e+02 Score=24.25 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+.+|++-+-..+. ...-+..+++ .+|+++
T Consensus 175 ~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l-~~G~i~ 217 (277)
T PRK13652 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVM-DKGRIV 217 (277)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-ECCeEE
Confidence 45567777777656666655422211 1355677788 488875
No 186
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=26.41 E-value=3.1e+02 Score=22.13 Aligned_cols=18 Identities=17% Similarity=-0.031 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHhC-cEEe
Q 022174 74 PTILKMQELAKELG-VVMP 91 (301)
Q Consensus 74 ~~~~~l~~~a~~~~-i~iv 91 (301)
.+.+.++++|++++ +..+
T Consensus 149 ~~n~~~~~~a~~~~~v~~v 167 (204)
T cd04506 149 DWNEASQKLASQYKNAYFV 167 (204)
T ss_pred HHHHHHHHHHHhCCCeEEE
Confidence 45667777787776 5554
No 187
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.37 E-value=2.7e+02 Score=23.19 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+. ..+.+..+++ .+|+++
T Consensus 178 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~~G~i~ 220 (233)
T cd03258 178 SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVM-EKGEVV 220 (233)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 34567777776655555544322111 2345677777 588875
No 188
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=26.26 E-value=2.4e+02 Score=23.25 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.++++ .+..|++-+-..+ -..+.+..+++ .+|++.
T Consensus 170 ~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~ 211 (222)
T cd03224 170 EIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVL-ERGRVV 211 (222)
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEe-eCCeEE
Confidence 44566666665 3455554432211 12456677777 578765
No 189
>PRK07534 methionine synthase I; Validated
Probab=26.11 E-value=3.7e+02 Score=24.36 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeee
Q 022174 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (301)
Q Consensus 21 ~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~ 96 (301)
+.++-.+.+...++...+.|||+++|--+.- -.....+.+++++.++.+++++..
T Consensus 125 ~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~---------------------l~E~~a~~~~~~~~~~Pv~vSft~ 179 (336)
T PRK07534 125 THALAVEAFHEQAEGLKAGGADVLWVETISA---------------------PEEIRAAAEAAKLAGMPWCGTMSF 179 (336)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeccCC---------------------HHHHHHHHHHHHHcCCeEEEEEEE
Confidence 4566677777777776778999999865221 123445566666667766666543
No 190
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=26.08 E-value=58 Score=28.88 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=25.3
Q ss_pred CCCeeeEEEEEEcCCCCeecccccccCCC
Q 022174 98 ANNAHYNSIAIIDADGSDLGLYRKSHIPD 126 (301)
Q Consensus 98 ~~~~~yN~~~~i~~~G~i~~~~~K~~l~~ 126 (301)
++...||+..++|.+|..+.+|+|.++..
T Consensus 123 ~l~~~yrk~hlFD~d~~~~~ry~e~~~~~ 151 (298)
T KOG0806|consen 123 DGLAKYRKNHLFDTDGPGVIRYRESHLLS 151 (298)
T ss_pred chhheeeeeEEeccCCccceeeeeeeccC
Confidence 34578999999999999999999999866
No 191
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=26.04 E-value=2.9e+02 Score=22.63 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..+++-+-..+. ..+.+..+++ .+|+++
T Consensus 168 ~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l-~~g~~~ 210 (213)
T cd03301 168 QMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVM-NDGQIQ 210 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE-ECCEEE
Confidence 45567777777655555544322111 1344666777 477764
No 192
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=25.84 E-value=1.7e+02 Score=21.91 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=30.9
Q ss_pred cceEEEEEecccCCCHHHHHHHHHHHHHHHHhCCCcEEEecccccCc
Q 022174 7 REVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGY 53 (301)
Q Consensus 7 ~~~kia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g 53 (301)
..++|+.+...- ..-...+...++|..+-.++++.|++|+-.++.
T Consensus 4 ~~~~v~~~~s~~--~~i~~~qdalDLi~~~~~~~~~~i~l~~~~l~~ 48 (113)
T PF13788_consen 4 NGIRVAEVSSDE--PLISDEQDALDLIGTAYEHGADRIILPKEALSE 48 (113)
T ss_pred CCeEEEEEeCCC--CeecchhHHHHHHHHHHHcCCCEEEEEhHHCCH
Confidence 346777776553 122234556667777778899999999988764
No 193
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=25.80 E-value=2.1e+02 Score=24.03 Aligned_cols=41 Identities=7% Similarity=0.093 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++ +..|++-+-..+ -..+.+..+++ .+|+++
T Consensus 175 ~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~ 216 (237)
T PRK11614 175 QIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVL-ENGHVV 216 (237)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEE-eCCEEE
Confidence 345666666654 455544332111 12456777788 478765
No 194
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.76 E-value=1.7e+02 Score=25.58 Aligned_cols=30 Identities=7% Similarity=-0.020 Sum_probs=25.6
Q ss_pred EEEeccCCcHHHHHHHHHCCCcEEEeeccc
Q 022174 155 VAICWDQWFPEAARAMVLQGAEILFYPTAI 184 (301)
Q Consensus 155 ~~IC~D~~~pe~~~~~~~~gadlil~p~~~ 184 (301)
+++++-+..||.++.+...|||-+++-|+.
T Consensus 205 i~vGFGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 205 IILGFGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred EEEECCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 446888889999999999999999998873
No 195
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=25.67 E-value=55 Score=21.06 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=18.1
Q ss_pred hhhhHhcCcceEEEecCccccccccccCCcceeeecceEEECCCCccccccC
Q 022174 203 MQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAAD 254 (301)
Q Consensus 203 ~~~~A~e~~~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~~l~~~~ 254 (301)
.+++++.+|.++-.... .|...+++|+|+.++-..
T Consensus 9 ~ea~~l~~Gr~l~~~~~-----------------~g~~aa~~pdG~lvAL~~ 43 (56)
T PF09142_consen 9 EEARDLRHGRRLPAAGP-----------------PGPVAAFAPDGRLVALLE 43 (56)
T ss_dssp HHHHHHHTT---B----------------------S-EEEE-TTS-EEEEEE
T ss_pred HHHHHHhCCCccCCCCC-----------------CceEEEECCCCcEEEEEE
Confidence 45566777777755522 258889999999998764
No 196
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=25.53 E-value=2.4e+02 Score=23.54 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHhCcEEe-eeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMP-VSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv-~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++ +..|+ +......-..+.+..+++ .+|++.
T Consensus 171 ~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l-~~G~i~ 212 (232)
T cd03218 171 DIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYII-YEGKVL 212 (232)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE-ECCeEE
Confidence 345666666654 44444 443211112455677777 588875
No 197
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=25.46 E-value=1.8e+02 Score=27.04 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=38.0
Q ss_pred HHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEc
Q 022174 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIID 110 (301)
Q Consensus 32 ~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~ 110 (301)
.|.+|..++++++++=|-.. .+..... ...++.|++++++ +..|++-+-..+ -..+-+..+++
T Consensus 149 ~IArAL~~~P~iLLLDEPts------gLD~~~~--------~~l~~lL~~l~~~-g~TIIivsHdl~~~~~~adrii~l- 212 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTA------SLDINHQ--------VRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLL- 212 (402)
T ss_pred HHHHHHHcCCCEEEEECCcc------cCCHHHH--------HHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEE-
Confidence 45555566778888877221 1111111 1456777888764 566665542211 12456677777
Q ss_pred CCCCee
Q 022174 111 ADGSDL 116 (301)
Q Consensus 111 ~~G~i~ 116 (301)
.+|+++
T Consensus 213 ~~G~iv 218 (402)
T PRK09536 213 ADGRVR 218 (402)
T ss_pred ECCEEE
Confidence 477765
No 198
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=25.30 E-value=2.5e+02 Score=21.53 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCcEEEecccccC
Q 022174 29 AERLVRAAHGKGANIILIQELFEG 52 (301)
Q Consensus 29 ~~~~i~~A~~~~~dlvvfPE~~l~ 52 (301)
.+++++.|.+.++|+|.+.-+..+
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~ 62 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGH 62 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccC
Confidence 456788888899999998654433
No 199
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=25.24 E-value=4.1e+02 Score=25.22 Aligned_cols=69 Identities=17% Similarity=0.110 Sum_probs=36.0
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCc-EEeeeeeecCCCe-eeEEEEEEc
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV-VMPVSFFEEANNA-HYNSIAIID 110 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i-~iv~G~~~~~~~~-~yN~~~~i~ 110 (301)
+..|...+++++++=|=. ........ ....+.|.+++++.+. .|++..-...-.. ..+..+++
T Consensus 412 la~al~~~p~lllLDEPt------~gLD~~~~--------~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l- 476 (490)
T PRK10938 412 IVRALVKHPTLLILDEPL------QGLDPLNR--------QLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV- 476 (490)
T ss_pred HHHHHhcCCCEEEEcCcc------ccCCHHHH--------HHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEe-
Confidence 344555677888888822 11111111 1456777777776555 3444432211112 34667777
Q ss_pred CCCCee
Q 022174 111 ADGSDL 116 (301)
Q Consensus 111 ~~G~i~ 116 (301)
.+|+++
T Consensus 477 ~~G~i~ 482 (490)
T PRK10938 477 PDGDIY 482 (490)
T ss_pred cCCceE
Confidence 588864
No 200
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=25.14 E-value=1.4e+02 Score=26.19 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhCCCcE-EEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEe
Q 022174 24 TNLATAERLVRAAHGKGANI-ILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (301)
Q Consensus 24 ~n~~~~~~~i~~A~~~~~dl-vvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv 91 (301)
.+.+...++.+.|++.|+|- ++.|-++... . .....+.+++++...++.|+
T Consensus 77 ~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~---~--------------~~~i~~~~~~i~~~~~~pi~ 128 (285)
T TIGR00674 77 NATEEAISLTKFAEDVGADGFLVVTPYYNKP---T--------------QEGLYQHFKAIAEEVDLPII 128 (285)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCcCCCC---C--------------HHHHHHHHHHHHhcCCCCEE
Confidence 35677888888888899984 5565443221 0 12456777888777666655
No 201
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=24.94 E-value=2.8e+02 Score=23.35 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+ -..+.+..+++ .+|++.
T Consensus 191 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l-~~G~i~ 233 (236)
T cd03267 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVI-DKGRLL 233 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEE-eCCEEE
Confidence 3456667776654555554432221 12345566677 477764
No 202
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=24.86 E-value=2.4e+02 Score=23.60 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHhCcEEee-eeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~-G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++ +..|++ ..-...-..+.+..+++ .+|+++
T Consensus 181 ~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l-~~G~i~ 222 (236)
T cd03219 181 ELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVL-DQGRVI 222 (236)
T ss_pred HHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEE-eCCEEE
Confidence 345667776653 455444 43211112345677777 578765
No 203
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=24.82 E-value=3.6e+02 Score=22.61 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+ -..+.+..+++ .+|+++
T Consensus 183 ~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l-~~G~i~ 225 (243)
T TIGR02315 183 QVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGL-KAGEIV 225 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE-ECCEEE
Confidence 3456777776655555554432221 12355677777 478765
No 204
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.79 E-value=4.1e+02 Score=22.89 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+.-...+..+++ .+|++.
T Consensus 180 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l-~~G~i~ 221 (271)
T PRK13632 180 EIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVF-SEGKLI 221 (271)
T ss_pred HHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEE-ECCEEE
Confidence 455677777665434444332221111245666777 588764
No 205
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=24.74 E-value=2e+02 Score=24.09 Aligned_cols=61 Identities=20% Similarity=0.119 Sum_probs=33.7
Q ss_pred HHHHHHHHHH-HhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeee
Q 022174 27 ATAERLVRAA-HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (301)
Q Consensus 27 ~~~~~~i~~A-~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~ 94 (301)
+.+...++++ .+.++++||+==+..-- ......+-.+.. ..+...|+.+|+++++++++-.
T Consensus 109 ~~l~~~i~~~~~~~~~~~vvID~l~~l~--~~~~~~~~~~~~-----~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 109 SDIRSRARRLKKEHGLGLIVIDYLQLMS--GSKKKGNRQQEV-----AEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCchhcC--CCCCCCCHHHHH-----HHHHHHHHHHHHHhCCeEEEec
Confidence 3444444443 33489998886443211 110000011111 2567899999999999998754
No 206
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.68 E-value=1.9e+02 Score=26.12 Aligned_cols=74 Identities=15% Similarity=0.257 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEE
Q 022174 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSI 106 (301)
Q Consensus 28 ~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~ 106 (301)
+-+-.|.+|...++++++.=|... .+.++ .....++.|+++-++.+++|++=.-+-+ =..+.|.+
T Consensus 147 KQRVaIARALa~~P~iLL~DEaTS------ALDP~--------TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rV 212 (339)
T COG1135 147 KQRVAIARALANNPKILLCDEATS------ALDPE--------TTQSILELLKDINRELGLTIVLITHEMEVVKRICDRV 212 (339)
T ss_pred hhHHHHHHHHhcCCCEEEecCccc------cCChH--------HHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhh
Confidence 334457778888999999888321 11111 1125788999999999999986542211 12578888
Q ss_pred EEEcCCCCee
Q 022174 107 AIIDADGSDL 116 (301)
Q Consensus 107 ~~i~~~G~i~ 116 (301)
+++ .+|+++
T Consensus 213 avm-~~G~lv 221 (339)
T COG1135 213 AVL-DQGRLV 221 (339)
T ss_pred eEe-eCCEEE
Confidence 999 488876
No 207
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.54 E-value=2.6e+02 Score=24.48 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
..++.|.+++++.+.+|++-+-..+. ..+.+.++++ .+|+++
T Consensus 183 ~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l-~~G~i~ 225 (290)
T PRK13634 183 EMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVM-HKGTVF 225 (290)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 45677778877767666655422111 2356777888 588875
No 208
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=24.45 E-value=2.6e+02 Score=23.39 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhCcEEeee-eeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVS-FFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G-~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++- .-...-..+.+..+++ .+|+++
T Consensus 163 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~ 205 (230)
T TIGR02770 163 RVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVM-DDGRIV 205 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 44567777776655555544 3211112456777788 588875
No 209
>PTZ00261 acyltransferase; Provisional
Probab=24.39 E-value=1e+02 Score=28.16 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeccccc
Q 022174 25 NLATAERLVRAAHGKGANIILIQELFE 51 (301)
Q Consensus 25 n~~~~~~~i~~A~~~~~dlvvfPE~~l 51 (301)
..+.+.+.+++..++|-.+++|||..-
T Consensus 200 a~~~v~~~~~e~Lk~G~sLvIFPEGTR 226 (355)
T PTZ00261 200 KQAQVQQAIDAHLRLGGSLAFFPEGAI 226 (355)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCcCC
Confidence 334455555556667889999999654
No 210
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=24.35 E-value=2.6e+02 Score=25.42 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=40.4
Q ss_pred HHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEc
Q 022174 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIID 110 (301)
Q Consensus 32 ~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~ 110 (301)
.+.+|...+++++++=|-. ..+..... ....+.|+++.++.++++++-+-..+ --.+.+..+++
T Consensus 146 alArAL~~~P~llLLDEP~------s~LD~~~r--------~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl- 210 (353)
T PRK10851 146 ALARALAVEPQILLLDEPF------GALDAQVR--------KELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVM- 210 (353)
T ss_pred HHHHHHhcCCCEEEEeCCC------ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-
Confidence 3445555678888887722 11111111 14567788888777766665432221 12456777888
Q ss_pred CCCCeec
Q 022174 111 ADGSDLG 117 (301)
Q Consensus 111 ~~G~i~~ 117 (301)
.+|+++.
T Consensus 211 ~~G~i~~ 217 (353)
T PRK10851 211 SQGNIEQ 217 (353)
T ss_pred ECCEEEE
Confidence 4888753
No 211
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=24.34 E-value=3e+02 Score=23.35 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..+++-+-..+. ..+.+..+++ .+|+++
T Consensus 184 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l-~~G~i~ 226 (252)
T TIGR03005 184 EVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF-DKGRIV 226 (252)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE-ECCEEE
Confidence 44566777776656655544322211 1345677778 588875
No 212
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.14 E-value=2.8e+02 Score=23.18 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+ -..+.+..+++ .+|+++
T Consensus 174 ~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l-~~G~i~ 216 (235)
T cd03261 174 VIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVL-YDGKIV 216 (235)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEE-ECCeEE
Confidence 4456777777654555554432111 12355677778 478875
No 213
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=24.12 E-value=2.5e+02 Score=23.55 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHhCcEEe-eeeeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMP-VSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv-~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++ +..|+ +..-...-..+.+..+++ .+|+++
T Consensus 174 ~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~ 215 (240)
T PRK09493 174 EVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFI-DKGRIA 215 (240)
T ss_pred HHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 345666666544 44444 443221112345677777 478875
No 214
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=24.09 E-value=93 Score=24.06 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecccccC
Q 022174 25 NLATAERLVRAAHGKGANIILIQELFEG 52 (301)
Q Consensus 25 n~~~~~~~i~~A~~~~~dlvvfPE~~l~ 52 (301)
+-+++.++.++|.+.++.++.||+...+
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq~ 89 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQS 89 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGGG
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHhh
Confidence 5678888888888889999999998864
No 215
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=24.07 E-value=3.9e+02 Score=22.69 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeee
Q 022174 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (301)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G 93 (301)
+.+++.+.+.++-|.+-|++.|+.......+-.........++.+ ...+..+.++|+++++.+..-
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~-----~~~l~~l~~~a~~~~i~l~~e 145 (274)
T COG1082 80 EEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERW-----AEALEELAEIAEELGIGLALE 145 (274)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHH-----HHHHHHHHHHHHHhCCceEEe
Confidence 467888888898899999998886665544322110000000111 156777888888886665544
No 216
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=24.02 E-value=2.4e+02 Score=24.05 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 75 TILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 75 ~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
..+.|.+++++ +..|++-+-..+ -..+.+..+++ .+|+++
T Consensus 191 l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~~l-~~G~i~ 231 (257)
T PRK10619 191 VLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFL-HQGKIE 231 (257)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEE-ECCEEE
Confidence 44556666544 555554432111 12345677788 478875
No 217
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=23.95 E-value=1.4e+02 Score=25.99 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCCc-EEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEee
Q 022174 25 NLATAERLVRAAHGKGAN-IILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (301)
Q Consensus 25 n~~~~~~~i~~A~~~~~d-lvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (301)
+.+...++++.|++.|+| +++.|-.+... . .....+.+++++...++.+++
T Consensus 80 ~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~---~--------------~~~l~~~~~~ia~~~~~pi~l 131 (284)
T cd00950 80 NTAEAIELTKRAEKAGADAALVVTPYYNKP---S--------------QEGLYAHFKAIAEATDLPVIL 131 (284)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcccccCCC---C--------------HHHHHHHHHHHHhcCCCCEEE
Confidence 556778888888889999 55665433211 0 124567777887766666653
No 218
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=23.83 E-value=1.6e+02 Score=19.35 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 76 ILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 76 ~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
-..++++..+..+.++-|..- ..|+.|++.++++.++++.
T Consensus 18 ~~~~~~Ll~~gkT~~ikGF~S-K~Gk~F~A~L~l~~~~~v~ 57 (62)
T PF13342_consen 18 DEEVKELLEKGKTGLIKGFKS-KKGKPFDAYLVLDDDKKVK 57 (62)
T ss_pred HHHHHHHHHcCCccCccCccc-CCCCEEeEEEEEcCCCeEE
Confidence 366778887777888888755 3678999999998777653
No 219
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=23.76 E-value=1.7e+02 Score=26.99 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=42.1
Q ss_pred eCCceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEE
Q 022174 148 TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVA 216 (301)
Q Consensus 148 ~~~~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~ 216 (301)
++|.||+..+=.+.----+...|...||++...++| |++ .......+.+...|+||..
T Consensus 43 lkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cN----plS-------TqD~vaaAl~~~~GipVfA 100 (420)
T COG0499 43 LKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCN----PLS-------TQDDVAAALAAKEGIPVFA 100 (420)
T ss_pred CCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCC----CCc-------ccHHHHHHHhhccCceEEE
Confidence 367889988877877777899999999999999887 322 1123455556666888764
No 220
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=23.73 E-value=2.8e+02 Score=25.10 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+. ..+.+..+++ .+|+++
T Consensus 178 ~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l-~~G~i~ 220 (343)
T PRK11153 178 SILELLKDINRELGLTIVLITHEMDVVKRICDRVAVI-DAGRLV 220 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 45677777777666666654322111 2356677788 488775
No 221
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=23.71 E-value=1.1e+02 Score=25.61 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecccccCcc
Q 022174 20 DDVSTNLATAERLVRAAHGKGANIILIQELFEGYY 54 (301)
Q Consensus 20 ~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~ 54 (301)
+.-....+.++.++.+|.++++++.||-|.+.+|-
T Consensus 115 G~~ndl~d~Le~~l~~A~~~~~~iyvFG~~F~~g~ 149 (206)
T PF10042_consen 115 GPDNDLNDDLEPYLQRAISDDATIYVFGEPFRPGN 149 (206)
T ss_pred CCcchHHHHHHHHHHHHHhCCCEEEEECceecCCC
Confidence 33456678888899999999999999999988774
No 222
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=23.60 E-value=2.1e+02 Score=18.33 Aligned_cols=41 Identities=7% Similarity=-0.007 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcE
Q 022174 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (301)
Q Consensus 27 ~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 89 (301)
+.+.+.++.-.....+.+-||.+.- .....+-++|..+++.
T Consensus 2 ~~i~~~i~~F~~~~~~~~~fppm~~----------------------~~R~~vH~lA~~~~L~ 42 (58)
T cd02646 2 EDIKDEIEAFLLDSRDSLSFPPMDK----------------------HGRKTIHKLANCYNLK 42 (58)
T ss_pred hHHHHHHHHHHhCCCceEecCCCCH----------------------HHHHHHHHHHHHcCCc
Confidence 3445555555555678889998431 3457788888888765
No 223
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.54 E-value=3.8e+02 Score=22.95 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEe
Q 022174 22 VSTNLATAERLVRAAHGKGANIILI 46 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvf 46 (301)
.+..++.+.+.++.|++-|++.|++
T Consensus 79 r~~~~~~l~~~i~~A~~lGa~~vv~ 103 (273)
T smart00518 79 VEKSIERLIDEIKRCEELGIKALVF 103 (273)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4456777888888888888887775
No 224
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.49 E-value=2.9e+02 Score=24.16 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+.+|++-+-..+. ..+.+..+++ .+|+++
T Consensus 182 ~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l-~~G~i~ 224 (287)
T PRK13637 182 EILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVM-NKGKCE 224 (287)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 45667777777666666655422221 2356777788 478875
No 225
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=23.13 E-value=2.8e+02 Score=24.76 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeee
Q 022174 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~ 94 (301)
.+...+.+.+-++..++.|...|| |....|+. .-.+.|+++|++.++.||++.
T Consensus 33 ~~~~~~~~~~El~~~k~~Gg~tiV--d~T~~g~G------------------Rd~~~l~~is~~tGv~II~~T 85 (308)
T PF02126_consen 33 RDEDVEAAVAELKEFKAAGGRTIV--DATPIGLG------------------RDVEALREISRRTGVNIIAST 85 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEE--E--SGGGT------------------B-HHHHHHHHHHHT-EEEEEE
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEE--ecCCcccC------------------cCHHHHHHHHHHhCCeEEEeC
Confidence 445778888888888899999988 44443431 234789999999999999875
No 226
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=23.12 E-value=2.9e+02 Score=22.93 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeee
Q 022174 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (301)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G 93 (301)
....+.+.+.++.. ++|-.+++|||-.-+.. ... .++..-...+|.+.++.|+--
T Consensus 106 ~~~~~~~~~~~~~l-~~g~~v~IfPEGtr~~~----------~~~-----~~f~~G~~~lA~~~~~pIvPv 160 (214)
T PLN02901 106 RSQLECLKRCMELL-KKGASVFFFPEGTRSKD----------GKL-----AAFKKGAFSVAAKTGVPVVPI 160 (214)
T ss_pred HHHHHHHHHHHHHH-hCCCEEEEeCCCCCCCC----------Ccc-----cCchhhHHHHHHHcCCCEEEE
Confidence 33444444544444 46888999999643210 001 123344557888888887644
No 227
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=22.91 E-value=5.2e+02 Score=24.05 Aligned_cols=125 Identities=14% Similarity=0.004 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCCCee
Q 022174 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAH 102 (301)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~ 102 (301)
.+.++++.++++...+...++.|++|.-+.-.. +.. .....+ ....+..+.........+-...
T Consensus 105 ~s~~~~~~Elv~~ll~~~~~i~V~v~~~~~~~~---------~f~----~~~~~e---~~~~~~~i~y~~~e~~~d~~~~ 168 (409)
T KOG2178|consen 105 ESVLEKFVELVEWLLQTFPNITVYVEDKVAKDK---------QFS----AGNLDE---SFGVKERILYWTTEGCDDLPNR 168 (409)
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEechhhhhhh---------hhc----ccchhh---cccchhceEeeccccccccccc
Confidence 566778888888888888899999995543210 000 001111 2222223333333223444578
Q ss_pred eEEEEEEcCCCCeecccccccCCCCCCCCcceeecCCCCCceeEEeCCceEEEEEeccCC-cHHHHHHHHHCCCcEEE
Q 022174 103 YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQW-FPEAARAMVLQGAEILF 179 (301)
Q Consensus 103 yN~~~~i~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~-~pe~~~~~~~~gadlil 179 (301)
|..++.++-||.++. . ...|..- -++++.+..|++|++.=+++. |-+........++-+.+
T Consensus 169 ~D~iItLGGDGTvL~--a------------S~LFq~~--VPPV~sFslGslGFLtpf~f~~f~~~l~~v~~~~~~v~l 230 (409)
T KOG2178|consen 169 FDLIITLGGDGTVLY--A------------SSLFQRS--VPPVLSFSLGSLGFLTPFPFANFQEQLARVLNGRAAVNL 230 (409)
T ss_pred eeEEEEecCCccEEE--e------------hhhhcCC--CCCeEEeecCCccccccccHHHHHHHHHHHhcCcceEee
Confidence 999999999998862 1 1122221 246777777778877777664 23333333334444433
No 228
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=22.89 E-value=3.4e+02 Score=22.62 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=35.2
Q ss_pred HHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCC
Q 022174 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDAD 112 (301)
Q Consensus 34 ~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~ 112 (301)
..|...+++++++=|-. ........ ....+.|.+++++.+..+++-+-..+. ..+-+..+++ .+
T Consensus 141 aral~~~p~lllLDEP~------~gLD~~~~--------~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l-~~ 205 (232)
T PRK10771 141 ARCLVREQPILLLDEPF------SALDPALR--------QEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVV-AD 205 (232)
T ss_pred HHHHhcCCCEEEEeCCc------ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-EC
Confidence 33444577888887722 11111111 145677777777656555554322211 1344566777 47
Q ss_pred CCee
Q 022174 113 GSDL 116 (301)
Q Consensus 113 G~i~ 116 (301)
|++.
T Consensus 206 g~i~ 209 (232)
T PRK10771 206 GRIA 209 (232)
T ss_pred CEEE
Confidence 8765
No 229
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.82 E-value=3.1e+02 Score=23.00 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHhCcEEeee-eeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVS-FFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G-~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++- .-...-..+.+..+++ .+|+++
T Consensus 174 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~~G~i~ 216 (239)
T cd03296 174 ELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVM-NKGRIE 216 (239)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-ECCeEE
Confidence 45567777776655555544 3211112345677777 488775
No 230
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=22.76 E-value=3.5e+02 Score=20.55 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=40.9
Q ss_pred ceEEEEEeccc---C-C-----CHHHHHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHH
Q 022174 8 EVVVSALQFAC---T-D-----DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (301)
Q Consensus 8 ~~kia~~Q~~~---~-~-----~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (301)
..++.++++.. . + ..++..+.+.++++.+.+.+ .++++--................... ..+.+.
T Consensus 61 ~~d~vvi~~G~ND~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 134 (179)
T PF13472_consen 61 KPDLVVISFGTNDVLNGDENDTSPEQYEQNLRRIIEQLRPHG-PVILVSPPPRGPDPRDPKQDYLNRRI-----DRYNQA 134 (179)
T ss_dssp TCSEEEEE--HHHHCTCTTCHHHHHHHHHHHHHHHHHHHTTS-EEEEEE-SCSSSSTTTTHTTCHHHHH-----HHHHHH
T ss_pred CCCEEEEEcccccccccccccccHHHHHHHHHHHHHhhcccC-cEEEecCCCcccccccccchhhhhhH-----HHHHHH
Confidence 44567777765 1 2 25566777777888877766 66665543322211100000001111 156678
Q ss_pred HHHHHHHhCcEEe
Q 022174 79 MQELAKELGVVMP 91 (301)
Q Consensus 79 l~~~a~~~~i~iv 91 (301)
++++|+++++.++
T Consensus 135 ~~~~a~~~~~~~i 147 (179)
T PF13472_consen 135 IRELAKKYGVPFI 147 (179)
T ss_dssp HHHHHHHCTEEEE
T ss_pred HHHHHHHcCCEEE
Confidence 8899999887765
No 231
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=22.75 E-value=3.7e+02 Score=24.83 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcE-EEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHh--CcEEee
Q 022174 23 STNLATAERLVRAAHGKGANI-ILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL--GVVMPV 92 (301)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dl-vvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~--~i~iv~ 92 (301)
+..++.+.+.|+.|++-|+.. +++|-..-..+.......+.++... +.+..+.+.|++. ++.+.+
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~-----e~L~~lae~A~~~G~GV~laL 178 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMR-----EALNLLAAYAEDQGYGLRFAL 178 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHH-----HHHHHHHHHHHhhCCCcEEEE
Confidence 566788889999999999975 5555432222211111111222121 4567777777775 466555
No 232
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=22.74 E-value=2.3e+02 Score=25.09 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
..++.|.++.++ +.+|++-+-..+ -..+-+..+++ .+|+++
T Consensus 203 ~l~~~l~~l~~~-g~tiiivtHd~~~~~~~adrv~vl-~~G~i~ 244 (305)
T PRK13651 203 EILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFF-KDGKII 244 (305)
T ss_pred HHHHHHHHHHHC-CCEEEEEeeCHHHHHHhCCEEEEE-ECCEEE
Confidence 445666766643 666655432221 12456677888 588875
No 233
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=22.72 E-value=3.3e+02 Score=23.21 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 75 TILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 75 ~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
..+.|++++++.+..|++-+-..+. ..+.+..+++ .+|+++
T Consensus 190 l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l-~~g~i~ 231 (258)
T PRK11701 190 LLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM-KQGRVV 231 (258)
T ss_pred HHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE-ECCEEE
Confidence 4466666666656666554322211 1356777788 578775
No 234
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=22.66 E-value=4e+02 Score=22.80 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEec
Q 022174 22 VSTNLATAERLVRAAHGKGANIILIQ 47 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvfP 47 (301)
....+..+.++.++.+.+|+.+|-++
T Consensus 114 c~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 114 TSSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45556677777777777889998887
No 235
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=22.57 E-value=3.4e+02 Score=22.97 Aligned_cols=42 Identities=10% Similarity=0.206 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..+++-+-..+. ..+.+..+++ .+|+++
T Consensus 186 ~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l-~~G~i~ 228 (253)
T TIGR02323 186 RLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVM-QQGRVV 228 (253)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE-ECCEEE
Confidence 34566677766656665554322111 1234566677 478775
No 236
>PRK09989 hypothetical protein; Provisional
Probab=22.53 E-value=3.7e+02 Score=22.90 Aligned_cols=62 Identities=8% Similarity=-0.032 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEE-EecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEee
Q 022174 22 VSTNLATAERLVRAAHGKGANII-LIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlv-vfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (301)
..+..+.+.+.|+.|++-|+..| ++|-....+. + ..+.++.. .+.+..+.+.|++.++.+.+
T Consensus 80 ~~~~~~~l~~~i~~A~~lg~~~v~v~~g~~~~~~---~-~~~~~~~~-----~~~l~~l~~~a~~~gv~l~l 142 (258)
T PRK09989 80 EHEARADIDLALEYALALNCEQVHVMAGVVPAGE---D-AERYRAVF-----IDNLRYAADRFAPHGKRILV 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCcCEEEECccCCCCCC---C-HHHHHHHH-----HHHHHHHHHHHHhcCCEEEE
Confidence 34556778889999999899866 4443221111 0 11111111 14567778888888988765
No 237
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.53 E-value=3.1e+02 Score=23.84 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+. ..+.+..+++ .+|+++
T Consensus 179 ~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l-~~G~i~ 221 (283)
T PRK13636 179 EIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVM-KEGRVI 221 (283)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE-ECCEEE
Confidence 45577788877656666655322111 1355677788 588875
No 238
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=22.50 E-value=2.8e+02 Score=22.14 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=40.8
Q ss_pred CCHHHHHHHH---------HHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEE
Q 022174 20 DDVSTNLATA---------ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (301)
Q Consensus 20 ~~~~~n~~~~---------~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 90 (301)
..+.+|+... +-.+..|...+++++++=|-... ......+ ...+.|.+++++ +..+
T Consensus 93 ~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~------LD~~~~~--------~l~~~l~~~~~~-~~ti 157 (182)
T cd03215 93 LSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRG------VDVGAKA--------EIYRLIRELADA-GKAV 157 (182)
T ss_pred CcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcC------CCHHHHH--------HHHHHHHHHHHC-CCEE
Confidence 4566666432 22456666679999999983321 1111111 345666666544 4444
Q ss_pred ee-eeeecCCCeeeEEEEEEcCCCC
Q 022174 91 PV-SFFEEANNAHYNSIAIIDADGS 114 (301)
Q Consensus 91 v~-G~~~~~~~~~yN~~~~i~~~G~ 114 (301)
++ ......-..+.+..+++ .+|+
T Consensus 158 ii~sh~~~~~~~~~d~v~~l-~~G~ 181 (182)
T cd03215 158 LLISSELDELLGLCDRILVM-YEGR 181 (182)
T ss_pred EEEeCCHHHHHHhCCEEEEe-cCCc
Confidence 44 33211112345666677 3665
No 239
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=22.46 E-value=2.3e+02 Score=25.63 Aligned_cols=69 Identities=9% Similarity=0.147 Sum_probs=37.2
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeec-CCCeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANNAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~-~~~~~yN~~~~i~~ 111 (301)
+..|...+++++++=|=. ....+... ....+.|.+++++ +..|++.+-.. .-..+.+..+++ .
T Consensus 183 lA~aL~~~P~lLiLDEPt------~gLD~~~r--------~~l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il-~ 246 (340)
T PRK13536 183 LARALINDPQLLILDEPT------TGLDPHAR--------HLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVL-E 246 (340)
T ss_pred HHHHHhcCCCEEEEECCC------CCCCHHHH--------HHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEE-E
Confidence 334445577888887722 11122111 1456677777654 66666554221 112456777788 4
Q ss_pred CCCeec
Q 022174 112 DGSDLG 117 (301)
Q Consensus 112 ~G~i~~ 117 (301)
+|+++.
T Consensus 247 ~G~i~~ 252 (340)
T PRK13536 247 AGRKIA 252 (340)
T ss_pred CCEEEE
Confidence 888763
No 240
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=22.41 E-value=3.4e+02 Score=21.60 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=37.2
Q ss_pred HHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEc
Q 022174 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIID 110 (301)
Q Consensus 32 ~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~ 110 (301)
.+.+|...+++++++=|-+.. ...+..+ ...+.|.+++++.+..+++-+-..+. ..+.+..+++
T Consensus 107 ~laral~~~p~llllDEP~~~------LD~~~~~--------~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l- 171 (180)
T cd03214 107 LLARALAQEPPILLLDEPTSH------LDIAHQI--------ELLELLRRLARERGKTVVMVLHDLNLAARYADRVILL- 171 (180)
T ss_pred HHHHHHhcCCCEEEEeCCccC------CCHHHHH--------HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-
Confidence 355566678999999883321 1111111 34566666666534554443321111 2455677777
Q ss_pred CCCCee
Q 022174 111 ADGSDL 116 (301)
Q Consensus 111 ~~G~i~ 116 (301)
.+|++.
T Consensus 172 ~~g~i~ 177 (180)
T cd03214 172 KDGRIV 177 (180)
T ss_pred ECCEEE
Confidence 477764
No 241
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=22.41 E-value=2e+02 Score=25.41 Aligned_cols=52 Identities=15% Similarity=0.036 Sum_probs=37.9
Q ss_pred cHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCccccc
Q 022174 163 FPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEI 224 (301)
Q Consensus 163 ~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~ 224 (301)
-|+..+++..+|+..+++.+. .| .. .-..-+...|.+.++.++-.|..|...
T Consensus 76 v~~~l~e~~~~Gvk~avIis~----Gf-----~e-~~~~~l~~~a~~~girilGPNc~Giin 127 (286)
T TIGR01019 76 AADAIFEAIDAGIELIVCITE----GI-----PV-HDMLKVKRYMEESGTRLIGPNCPGIIT 127 (286)
T ss_pred HHHHHHHHHHCCCCEEEEECC----CC-----CH-HHHHHHHHHHHHcCCEEECCCCceEEc
Confidence 477888899999999988876 11 11 112345668999999999999988643
No 242
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=22.39 E-value=1.5e+02 Score=25.85 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=35.9
Q ss_pred CCceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEE
Q 022174 149 KFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVA 216 (301)
Q Consensus 149 ~~~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~ 216 (301)
+|.||+..+=-+.----+.+.+...||++.+..+| |+ ........+.+ +.|++|..
T Consensus 42 ~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sN----pl-------STQDdvaAAL~-~~Gi~V~A 97 (268)
T PF05221_consen 42 KGARIAGCLHLEAKTAVLAETLKALGAEVRWTGSN----PL-------STQDDVAAALA-EEGIPVFA 97 (268)
T ss_dssp TTEEEEEES--SHHHHHHHHHHHHTTEEEEEEESS----TT-------T--HHHHHHHH-HTTEEEEE
T ss_pred CCCEEEEEEechHHHHHHHHHHHHcCCeEEEecCC----Cc-------ccchHHHHHhc-cCCceEEE
Confidence 67788875544554556888999999999999887 22 11134444444 56887753
No 243
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=22.34 E-value=4.2e+02 Score=25.61 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=42.0
Q ss_pred ceEEEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEec
Q 022174 151 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASN 218 (301)
Q Consensus 151 ~~ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n 218 (301)
.++|.+|+-.-...+-+..+.+.|+|+|+.=++-+ .+...|..+..-++.--+..++..|
T Consensus 237 l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g--------~~~~~~~~i~~ik~~~p~~~vi~g~ 296 (505)
T PLN02274 237 LLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQG--------DSIYQLEMIKYIKKTYPELDVIGGN 296 (505)
T ss_pred EEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCC--------CcHHHHHHHHHHHHhCCCCcEEEec
Confidence 46788898766667888999999999999877521 3456677766555544456665544
No 244
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.28 E-value=3.1e+02 Score=23.08 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHhCcEEeee-eeecCCCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVS-FFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G-~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++- .....-..+.+..+++ .+|+++
T Consensus 173 ~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l-~~G~i~ 215 (242)
T cd03295 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIM-KNGEIV 215 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE-ECCEEE
Confidence 45566777766545555544 3221112455677778 488875
No 245
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=22.26 E-value=2.9e+02 Score=23.53 Aligned_cols=68 Identities=12% Similarity=0.201 Sum_probs=34.2
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~ 111 (301)
+..|...+++++++=|-+. ....... ....+.|.+++++ +.++++-+-.... ..+.+..+++ .
T Consensus 149 laral~~~p~llllDEP~~------~LD~~~~--------~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l-~ 212 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTT------YLDINHQ--------VELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVL-A 212 (255)
T ss_pred HHHHHhcCCCEEEEcCCcc------cCCHHHH--------HHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEE-E
Confidence 3444455677777777221 1111111 1345666666554 5555544322111 2356677788 4
Q ss_pred CCCee
Q 022174 112 DGSDL 116 (301)
Q Consensus 112 ~G~i~ 116 (301)
+|+++
T Consensus 213 ~G~i~ 217 (255)
T PRK11231 213 NGHVM 217 (255)
T ss_pred CCeEE
Confidence 78775
No 246
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=21.94 E-value=2.7e+02 Score=23.19 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=33.4
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~ 111 (301)
+.+|...+++++++=|-+.. ...... ....+.|.+++++ +..|++-+-..+ -..+-+..+++ .
T Consensus 153 laral~~~p~llllDEP~~g------LD~~~~--------~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l-~ 216 (224)
T cd03220 153 FAIATALEPDILLIDEVLAV------GDAAFQ--------EKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVL-E 216 (224)
T ss_pred HHHHHhcCCCEEEEeCCccc------CCHHHH--------HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE-E
Confidence 44444456777777772211 111111 1355677777665 444444332211 11344566777 4
Q ss_pred CCCee
Q 022174 112 DGSDL 116 (301)
Q Consensus 112 ~G~i~ 116 (301)
+|+++
T Consensus 217 ~G~i~ 221 (224)
T cd03220 217 KGKIR 221 (224)
T ss_pred CCEEE
Confidence 78764
No 247
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=21.91 E-value=1.3e+02 Score=20.73 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEe
Q 022174 20 DDVSTNLATAERLVRAAHGKGANIILI 46 (301)
Q Consensus 20 ~~~~~n~~~~~~~i~~A~~~~~dlvvf 46 (301)
.|+++. +.++.++|++.|+|-||=
T Consensus 25 ~d~d~A---l~eM~e~A~~lGAnAVVG 48 (74)
T TIGR03884 25 DNVDEI---VENLREKVKAKGGMGLIA 48 (74)
T ss_pred CCHHHH---HHHHHHHHHHcCCCEEEE
Confidence 466644 455667778889988873
No 248
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=21.86 E-value=3.5e+02 Score=21.94 Aligned_cols=69 Identities=9% Similarity=0.164 Sum_probs=36.7
Q ss_pred HHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecC--CCeeeEEEEEE
Q 022174 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA--NNAHYNSIAII 109 (301)
Q Consensus 32 ~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~--~~~~yN~~~~i 109 (301)
.+..|...+++++++=|-.. .......+ ...+.|.++.++ +..+++-+-... -....+..+++
T Consensus 121 ~laral~~~p~illlDEP~~------~LD~~~~~--------~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l 185 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTS------GLDSSSAL--------QVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLL 185 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCc------CCCHHHHH--------HHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEE
Confidence 35556667899999999332 11111111 445666666554 444444332211 11345677777
Q ss_pred cCCCCee
Q 022174 110 DADGSDL 116 (301)
Q Consensus 110 ~~~G~i~ 116 (301)
.+|++.
T Consensus 186 -~~G~i~ 191 (194)
T cd03213 186 -SQGRVI 191 (194)
T ss_pred -eCCEEE
Confidence 478764
No 249
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=21.85 E-value=2.8e+02 Score=22.59 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.++++ .+..+++-+-... -..+.+..+++ .+|+++
T Consensus 164 ~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l-~~g~i~ 205 (208)
T cd03268 164 ELRELILSLRD-QGITVLISSHLLSEIQKVADRIGII-NKGKLI 205 (208)
T ss_pred HHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEE-ECCEEE
Confidence 34456666655 3444444332111 11345667777 477764
No 250
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.65 E-value=1.9e+02 Score=25.78 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCCc-EEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHh-CcEEee
Q 022174 25 NLATAERLVRAAHGKGAN-IILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMPV 92 (301)
Q Consensus 25 n~~~~~~~i~~A~~~~~d-lvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~i~iv~ 92 (301)
+.+...++.+.|.+.|+| ++|.|-++... . .....+.++.+|... ++.|++
T Consensus 88 ~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~----~-------------~~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 88 NTRDTIARTRALLDLGADGTMLGRPMWLPL----D-------------VDTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCcCCCC----C-------------HHHHHHHHHHHHHhCCCCcEEE
Confidence 456777788888888998 56666543221 0 125567778888776 466553
No 251
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=21.60 E-value=1.1e+02 Score=18.37 Aligned_cols=14 Identities=43% Similarity=0.460 Sum_probs=8.4
Q ss_pred cceEEECCCCcccc
Q 022174 238 GNSFIAGPTGEIVA 251 (301)
Q Consensus 238 G~S~i~~p~G~~l~ 251 (301)
|.|.|+-|+|+.+.
T Consensus 1 G~SGii~~dG~~~q 14 (40)
T PF08140_consen 1 GPSGIITPDGTNVQ 14 (40)
T ss_pred CCCceECCCCCEEE
Confidence 35666666666553
No 252
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.52 E-value=2.7e+02 Score=24.11 Aligned_cols=41 Identities=7% Similarity=0.106 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++ +..|++-+-..+ -..+.+..+++ .+|+++
T Consensus 183 ~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l-~~G~i~ 224 (280)
T PRK13649 183 ELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVL-EKGKLV 224 (280)
T ss_pred HHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEE-ECCEEE
Confidence 345666666543 555554432221 12356777788 478765
No 253
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=21.34 E-value=3.6e+02 Score=22.94 Aligned_cols=42 Identities=7% Similarity=0.133 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+. ..+.+..+++ .+|++.
T Consensus 178 ~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l-~~G~i~ 220 (254)
T PRK10418 178 RILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM-SHGRIV 220 (254)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE-ECCEEE
Confidence 45577777777656666554322111 1344666777 578764
No 254
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=21.28 E-value=3e+02 Score=23.22 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhCcEEeee-eeecCCCeeeEEEEEEcCCCCee
Q 022174 75 TILKMQELAKELGVVMPVS-FFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 75 ~~~~l~~~a~~~~i~iv~G-~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
..+.|.+++++ +..+++- .....-..+.+..+++ .+|+++
T Consensus 183 l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l-~~G~i~ 223 (250)
T PRK11264 183 VLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFM-DQGRIV 223 (250)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEE-ECCEEE
Confidence 44556666554 4444443 3211112345677788 478765
No 255
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=21.18 E-value=3.9e+02 Score=22.82 Aligned_cols=42 Identities=10% Similarity=0.206 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++.+..|++-+-..+ -..+-+..+++ .+|++.
T Consensus 190 ~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l-~~g~i~ 232 (262)
T PRK09984 190 IVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL-RQGHVF 232 (262)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 4556777777655555554432211 12345666777 477764
No 256
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=21.17 E-value=3.3e+02 Score=24.33 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCeec
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDLG 117 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~~ 117 (301)
...+.|.++.++.+..+++-+-..+ -..+.+..+++ .+|+++.
T Consensus 138 ~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl-~~G~i~~ 181 (325)
T TIGR01187 138 QMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM-RKGKIAQ 181 (325)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEEE
Confidence 4556777777776666655432211 12345677788 4888753
No 257
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=21.08 E-value=3.5e+02 Score=21.97 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=37.6
Q ss_pred HHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeec-CCCe-eeEEEEEE
Q 022174 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANNA-HYNSIAII 109 (301)
Q Consensus 32 ~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~-~~~~-~yN~~~~i 109 (301)
.+..|...+++++++=|-.. ....... ....+.|.+++++ +..+++-+-.. .-.. +.+..+++
T Consensus 114 ~laral~~~p~illlDEPt~------~LD~~~~--------~~l~~~L~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l 178 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDS------GLDIDAL--------RLVAEVINKLREE-GKSVLIITHYQRLLDYIKPDRVHVL 178 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCc------cCCHHHH--------HHHHHHHHHHHHC-CCEEEEEecCHHHHHHhhCCEEEEE
Confidence 35556667899999998332 1111111 1455667776554 44544433221 1223 46777788
Q ss_pred cCCCCee
Q 022174 110 DADGSDL 116 (301)
Q Consensus 110 ~~~G~i~ 116 (301)
.+|++.
T Consensus 179 -~~G~i~ 184 (200)
T cd03217 179 -YDGRIV 184 (200)
T ss_pred -ECCEEE
Confidence 478765
No 258
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=21.04 E-value=4e+02 Score=22.40 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeee
Q 022174 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (301)
Q Consensus 28 ~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~ 94 (301)
.+..+++++...++++||+=.+.-. +.......... ...+..|.+++++.++.+++-.
T Consensus 99 ~~~~l~~~~~~~~~~lvviDpl~~~-~~~~~~d~~~~--------~~~~~~L~~~a~~~g~avl~v~ 156 (239)
T cd01125 99 EFERIIEQLLIRRIDLVVIDPLVSF-HGVSENDNGAM--------DAVIKALRRIAAQTGAAILLVH 156 (239)
T ss_pred HHHHHHHHHHhcCCCEEEECChHHh-CCCCcCCHHHH--------HHHHHHHHHHHHHhCCEEEEEe
Confidence 3444444455668899988744321 11001111000 1456788888888888777543
No 259
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.02 E-value=2.4e+02 Score=23.07 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCee
Q 022174 75 TILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 75 ~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~ 116 (301)
..+.|++++++ .+.|++..-...-..+-+..+++ .+|+++
T Consensus 169 l~~~l~~~~~~-~tii~vsH~~~~~~~~~d~i~~l-~~g~i~ 208 (211)
T cd03264 169 FRNLLSELGED-RIVILSTHIVEDVESLCNQVAVL-NKGKLV 208 (211)
T ss_pred HHHHHHHHhCC-CEEEEEcCCHHHHHHhCCEEEEE-ECCEEE
Confidence 44556666543 33333443211111344666777 478764
No 260
>PRK10116 universal stress protein UspC; Provisional
Probab=20.99 E-value=3.2e+02 Score=20.41 Aligned_cols=50 Identities=4% Similarity=-0.095 Sum_probs=32.0
Q ss_pred HHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCcc
Q 022174 164 PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIG 221 (301)
Q Consensus 164 pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G 221 (301)
..+.+...+.++|+|+..+-- .....++...........+|||+.+-..|
T Consensus 92 ~~I~~~a~~~~~DLiV~g~~~--------~~~~~~~~s~a~~v~~~~~~pVLvv~~~~ 141 (142)
T PRK10116 92 EHILEVCRKHHFDLVICGNHN--------HSFFSRASCSAKRVIASSEVDVLLVPLTG 141 (142)
T ss_pred HHHHHHHHHhCCCEEEEcCCc--------chHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 345666667899999997651 11233333345567788899999876543
No 261
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=20.94 E-value=3.6e+02 Score=23.12 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=36.9
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~ 111 (301)
+.+|...+++++++=|-. ........ ....+.|.+++++.+..|++-+-... -..+.+..+++ .
T Consensus 154 laral~~~p~llllDEPt------~gLD~~~~--------~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l-~ 218 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPT------TWLDISHQ--------IDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIAL-R 218 (265)
T ss_pred HHHHHhcCCCEEEEeCcc------ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-E
Confidence 444555678888887722 11111111 13556777776655655555432211 12456677777 4
Q ss_pred CCCee
Q 022174 112 DGSDL 116 (301)
Q Consensus 112 ~G~i~ 116 (301)
+|+++
T Consensus 219 ~G~i~ 223 (265)
T PRK10253 219 EGKIV 223 (265)
T ss_pred CCEEE
Confidence 78765
No 262
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=20.91 E-value=3.2e+02 Score=24.82 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=39.3
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~ 111 (301)
+.+|...+++++++=|=. ..+..... ....+.|+++.++.++.+++-+-..+. -.+-+..+++ .
T Consensus 147 LARaL~~~P~lLLLDEP~------s~LD~~~r--------~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm-~ 211 (351)
T PRK11432 147 LARALILKPKVLLFDEPL------SNLDANLR--------RSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVM-N 211 (351)
T ss_pred HHHHHHcCCCEEEEcCCc------ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE-E
Confidence 444555577788877722 11111111 145677777877777776655422221 2456778888 4
Q ss_pred CCCeec
Q 022174 112 DGSDLG 117 (301)
Q Consensus 112 ~G~i~~ 117 (301)
+|++..
T Consensus 212 ~G~i~~ 217 (351)
T PRK11432 212 KGKIMQ 217 (351)
T ss_pred CCEEEE
Confidence 888763
No 263
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.83 E-value=3e+02 Score=20.42 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeee
Q 022174 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (301)
Q Consensus 25 n~~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G 93 (301)
..+.+.+.++++.+.|+.-++|--- ...+.+.++|+++++.++++
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEES
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEeC
Confidence 3466777777777777766554331 23467889999999998864
No 264
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=20.77 E-value=3.6e+02 Score=23.20 Aligned_cols=42 Identities=10% Similarity=0.187 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|++++++.+..+++-+-..+. ..+.+..+++ .+|++.
T Consensus 189 ~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l-~~G~i~ 231 (268)
T PRK10419 189 GVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM-DNGQIV 231 (268)
T ss_pred HHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEE-ECCEEe
Confidence 35567777777656655554322221 1355677788 477764
No 265
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.75 E-value=2.8e+02 Score=23.98 Aligned_cols=68 Identities=10% Similarity=0.155 Sum_probs=35.8
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~ 111 (301)
+..|...+++++++=|-... ...... ....+.|.+++++ +.+|++-+-..+. ..+-+..+++ .
T Consensus 149 laraL~~~p~llllDEPt~~------LD~~~~--------~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l-~ 212 (274)
T PRK13647 149 IAGVLAMDPDVIVLDEPMAY------LDPRGQ--------ETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVL-K 212 (274)
T ss_pred HHHHHHcCCCEEEEECCCcC------CCHHHH--------HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE-E
Confidence 34444567788888772211 111111 1455667777654 5666554422211 1356677788 5
Q ss_pred CCCee
Q 022174 112 DGSDL 116 (301)
Q Consensus 112 ~G~i~ 116 (301)
+|+++
T Consensus 213 ~G~i~ 217 (274)
T PRK13647 213 EGRVL 217 (274)
T ss_pred CCEEE
Confidence 88875
No 266
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=20.74 E-value=5.7e+02 Score=22.25 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHh--CcEEeeeee-ecCCCeeeE
Q 022174 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL--GVVMPVSFF-EEANNAHYN 104 (301)
Q Consensus 28 ~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~--~i~iv~G~~-~~~~~~~yN 104 (301)
+-+-+|.+|.-.++.|+++=|-+-.- | .... ..+++.|.+++... ...+++... +.-..+ ++
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GL----D--l~~r--------e~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~-~t 241 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGL----D--LIAR--------EQLLNRLEELAASPGAPALLFVTHHAEEIPPC-FT 241 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccC----C--hHHH--------HHHHHHHHHHhcCCCCceEEEEEcchhhcccc-cc
Confidence 44456777777899999999944221 1 0011 25678888888762 334445543 322334 44
Q ss_pred EEEEEcCCCCeeccc
Q 022174 105 SIAIIDADGSDLGLY 119 (301)
Q Consensus 105 ~~~~i~~~G~i~~~~ 119 (301)
-.+.+ .+|+++..+
T Consensus 242 h~lll-~~g~v~~~g 255 (257)
T COG1119 242 HRLLL-KEGEVVAQG 255 (257)
T ss_pred eEEEe-eCCceeecc
Confidence 45566 588876544
No 267
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=20.69 E-value=5.1e+02 Score=22.98 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeccc
Q 022174 21 DVSTNLATAERLVRAAHGKGANIILIQEL 49 (301)
Q Consensus 21 ~~~~n~~~~~~~i~~A~~~~~dlvvfPE~ 49 (301)
+.++..+.+...++...+.|||+++|--+
T Consensus 134 ~~~~~~~~~~~q~~~l~~~gvD~i~~ET~ 162 (304)
T PRK09485 134 SEEELQDFHRPRIEALAEAGADLLACETI 162 (304)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEecc
Confidence 45666677777777777889999999653
No 268
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=20.66 E-value=3.6e+02 Score=20.01 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=10.6
Q ss_pred EEEEEcCCCCeeccc
Q 022174 105 SIAIIDADGSDLGLY 119 (301)
Q Consensus 105 ~~~~i~~~G~i~~~~ 119 (301)
+.+++|++|+|+..|
T Consensus 112 ~~~lid~~G~v~~~~ 126 (140)
T cd03017 112 STFLIDPDGKIVKVW 126 (140)
T ss_pred eEEEECCCCEEEEEE
Confidence 567888888776444
No 269
>PRK11756 exonuclease III; Provisional
Probab=20.63 E-value=1.8e+02 Score=25.01 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=22.9
Q ss_pred eEEEEEecccCCCHHHHHHHHHHHHHHHHhCCCcEEEecccc
Q 022174 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELF 50 (301)
Q Consensus 9 ~kia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~ 50 (301)
|||.....+- ....++++.+.|+ +.++|+|+|-|.-
T Consensus 1 mri~T~Nv~g---~~~~~~~i~~~i~---~~~pDIi~LQE~~ 36 (268)
T PRK11756 1 MKFVSFNING---LRARPHQLEAIIE---KHQPDVIGLQETK 36 (268)
T ss_pred CEEEEEEcCC---HHHHHHHHHHHHH---hcCCCEEEEEecc
Confidence 4666655553 3334455555554 5589999999964
No 270
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.61 E-value=4.2e+02 Score=20.71 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=40.1
Q ss_pred EEEEEeccc---C-C-----CHHHHHHHHHHHHHHH--HhCCCcEEEecccccCcccCC-ccchHHHhhcCCCCCChhHH
Q 022174 10 VVSALQFAC---T-D-----DVSTNLATAERLVRAA--HGKGANIILIQELFEGYYFCQ-AQREDFFQRAKPYKDHPTIL 77 (301)
Q Consensus 10 kia~~Q~~~---~-~-----~~~~n~~~~~~~i~~A--~~~~~dlvvfPE~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~ 77 (301)
++.++++.. . . ..++..+.+.++++.+ ...++.+|+..=......... .......... ..+.+
T Consensus 63 d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~~~~~~~~~~~-----~~~n~ 137 (191)
T cd01834 63 DVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPLPDGAEYNANL-----AAYAD 137 (191)
T ss_pred CEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCCCChHHHHHHH-----HHHHH
Confidence 566777655 1 1 3555566667777766 455778777532111110000 0000111111 25667
Q ss_pred HHHHHHHHhCcEEe
Q 022174 78 KMQELAKELGVVMP 91 (301)
Q Consensus 78 ~l~~~a~~~~i~iv 91 (301)
.++++|+++++.++
T Consensus 138 ~l~~~a~~~~~~~i 151 (191)
T cd01834 138 AVRELAAENGVAFV 151 (191)
T ss_pred HHHHHHHHcCCeEE
Confidence 88888999887766
No 271
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.57 E-value=4e+02 Score=24.14 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecccc----cC------cccC-----CccchHHHhhcCCCCCChhHHHHHHHHHHh
Q 022174 22 VSTNLATAERLVRAAHGKGANIILIQELF----EG------YYFC-----QAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (301)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dlvvfPE~~----l~------g~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (301)
...+++...++|+.|++.|+|.|=|-=+. .. .|.. .....+.++.++ + ..++.+.|.+.|++.
T Consensus 11 H~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l-~~e~~~~L~~~~~~~ 88 (329)
T TIGR03569 11 HNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLE-L-SEEDHRELKEYCESK 88 (329)
T ss_pred ccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhC-C-CHHHHHHHHHHHHHh
Confidence 34467888999999999999988665331 11 0100 001122233333 2 247899999999999
Q ss_pred CcEEeeeee
Q 022174 87 GVVMPVSFF 95 (301)
Q Consensus 87 ~i~iv~G~~ 95 (301)
|+.++..-.
T Consensus 89 Gi~~~stpf 97 (329)
T TIGR03569 89 GIEFLSTPF 97 (329)
T ss_pred CCcEEEEeC
Confidence 999887643
No 272
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=20.48 E-value=94 Score=25.95 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=37.7
Q ss_pred EEEEeccCCcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCcc
Q 022174 154 GVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIG 221 (301)
Q Consensus 154 g~~IC~D~~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G 221 (301)
.+.||-|.+.|+..+...+.|+++|.+.++.. ..+ -+...+.+++++++..-.-|
T Consensus 72 ~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~---------~~~----~~~~l~a~~~~~vV~m~~~~ 126 (210)
T PF00809_consen 72 DVPLSIDTFNPEVAEAALKAGADIINDISGFE---------DDP----EMLPLAAEYGAPVVLMHSDG 126 (210)
T ss_dssp TSEEEEEESSHHHHHHHHHHTSSEEEETTTTS---------SST----THHHHHHHHTSEEEEESESS
T ss_pred CeEEEEECCCHHHHHHHHHcCcceEEeccccc---------ccc----hhhhhhhcCCCEEEEEeccc
Confidence 45678899999998888878999999987721 111 12224556787777665443
No 273
>PLN02591 tryptophan synthase
Probab=20.43 E-value=2.8e+02 Score=23.94 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=27.2
Q ss_pred EEEEEeccCCcHHHHHHHHHCCCcEEEeeccc
Q 022174 153 IGVAICWDQWFPEAARAMVLQGAEILFYPTAI 184 (301)
Q Consensus 153 ig~~IC~D~~~pe~~~~~~~~gadlil~p~~~ 184 (301)
.=+++++-+..|+-++.+...|||=+++-|+.
T Consensus 190 ~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 190 KPVAVGFGISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred CceEEeCCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 44567888999999999999999999998874
No 274
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=20.41 E-value=1.2e+02 Score=27.80 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCC---CChhHHHHHHHHHHhCcEEeeeee
Q 022174 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYK---DHPTILKMQELAKELGVVMPVSFF 95 (301)
Q Consensus 27 ~~~~~~i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~a~~~~i~iv~G~~ 95 (301)
+.+++-++.+++.|+++|-+.+++=. .++|.+ .-..++.+-+.|+++|+.|+++++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~-------------~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWS-------------WLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHH-------------HH-SBTTB---HHHHHHHHHHHCTT-EEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechh-------------hccCCCCeeecHHHHHHHHHHHhccCeEEEEec
Confidence 34555556666669999988885411 112211 125688889999999999998864
No 275
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=20.41 E-value=3.7e+02 Score=25.24 Aligned_cols=66 Identities=9% Similarity=0.069 Sum_probs=40.6
Q ss_pred CceEEEEEeccCCcHH--------HHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCcc
Q 022174 150 FAKIGVAICWDQWFPE--------AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIG 221 (301)
Q Consensus 150 ~~~ig~~IC~D~~~pe--------~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G 221 (301)
+--++-+||-|..|-+ +..-+.+.++|+++.-.++....|. ..--.+..+..-+.++|++.+-..-
T Consensus 44 ~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG------~acg~va~aV~e~~~IP~vtaMy~E 117 (431)
T TIGR01917 44 AEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYG------MAAGAITKAVQDELGIKAFTAMYEE 117 (431)
T ss_pred CEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHH------HHHHHHHHHHHHhhCCCeEEEeccc
Confidence 3457999999999865 2222346789999987664332111 1122344545556788888766543
No 276
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=20.30 E-value=3.8e+02 Score=25.21 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=40.6
Q ss_pred CceEEEEEeccCCcHH--------HHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEecCcc
Q 022174 150 FAKIGVAICWDQWFPE--------AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIG 221 (301)
Q Consensus 150 ~~~ig~~IC~D~~~pe--------~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G 221 (301)
+--++-+||-|..|-+ +..-+.+.++|+++.-.++....|. ..--.+..+..-+.++|++.+-..-
T Consensus 44 ~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG------~acg~va~aV~e~~~IP~vt~My~E 117 (431)
T TIGR01918 44 AEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYG------VACGEICKVVQDKLNVPAVTSMYVE 117 (431)
T ss_pred CEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHH------HHHHHHHHHHHHhhCCCeEEEeccc
Confidence 3457999999999865 2222345789999987664332111 1222344545556789988766543
No 277
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.29 E-value=4.1e+02 Score=22.22 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++.+.+..+++-+-.... ..+....+++ .+|+++
T Consensus 167 ~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l-~~G~i~ 209 (235)
T cd03299 167 KLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIM-LNGKLI 209 (235)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-ECCEEE
Confidence 34566777766556666655422211 1234566777 478775
No 278
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=20.22 E-value=2.8e+02 Score=24.44 Aligned_cols=41 Identities=7% Similarity=0.178 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.+++++ +..|++-+-..+ -..+.+..+++ .+|+++
T Consensus 173 ~l~~~l~~~~~~-g~til~~sH~~~~~~~~~d~i~~l-~~G~i~ 214 (303)
T TIGR01288 173 LIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVL-ESGRKI 214 (303)
T ss_pred HHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEE-ECCEEE
Confidence 345667777654 555554432111 12355677777 478775
No 279
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=20.22 E-value=1.5e+02 Score=21.54 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHCCCcEEEeecccCCCCCCCCCCcHHHHHHHhhhhHhcCcceEEEe
Q 022174 162 WFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVAS 217 (301)
Q Consensus 162 ~~pe~~~~~~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~ 217 (301)
-.|++...+....+|++++... ... .... ....+..|+++++|++.+
T Consensus 55 ~~~~i~~~i~~~~id~vIn~~~-~~~-----~~~~---~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 55 GRPNIVDLIKNGEIQLVINTPS-GKR-----AIRD---GFSIRRAALEYKVPYFTT 101 (110)
T ss_pred CchhHHHHHHcCCeEEEEECCC-CCc-----cCcc---HHHHHHHHHHhCCCEEec
Confidence 3477777788889999999643 110 0111 234566799999999853
No 280
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=20.21 E-value=3.1e+02 Score=19.02 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhCcEEeeeeeecCCCeeeEEEEEEcCCCCeec
Q 022174 75 TILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLG 117 (301)
Q Consensus 75 ~~~~l~~~a~~~~i~iv~G~~~~~~~~~yN~~~~i~~~G~i~~ 117 (301)
-++.+.+.+++.++.++.+......+ ..+..+.||+|.++.
T Consensus 66 dv~~~~~~l~~~G~~~~~~~~~~~~g--~~~~~~~DPdG~~ie 106 (108)
T PF12681_consen 66 DVDALYERLKELGAEIVTEPRDDPWG--QRSFYFIDPDGNRIE 106 (108)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEEETTS--EEEEEEE-TTS-EEE
T ss_pred CHHHHHHHHHHCCCeEeeCCEEcCCC--eEEEEEECCCCCEEE
Confidence 45667777778898887765443332 247789999998753
No 281
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=20.14 E-value=3.6e+02 Score=22.92 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecCC-CeeeEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~~-~~~yN~~~~i~~~G~i~ 116 (301)
...+.|.++.++ +..|++-+-..+. ..+.+..+++ .+|+++
T Consensus 175 ~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~ 216 (256)
T TIGR03873 175 ETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVL-DGGRVV 216 (256)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE-eCCCEE
Confidence 344566666543 5555544322111 2456677777 478875
No 282
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=20.13 E-value=3.9e+02 Score=22.29 Aligned_cols=41 Identities=10% Similarity=0.034 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHhCcEEeeeeeecC-CCee-eEEEEEEcCCCCee
Q 022174 74 PTILKMQELAKELGVVMPVSFFEEA-NNAH-YNSIAIIDADGSDL 116 (301)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~G~~~~~-~~~~-yN~~~~i~~~G~i~ 116 (301)
...+.|++++++ +..|++-+-..+ -... .+..+++ .+|+++
T Consensus 182 ~l~~~l~~~~~~-~~tvi~vsH~~~~~~~~~~d~i~~l-~~G~i~ 224 (243)
T TIGR01978 182 IVAEGINRLREP-DRSFLIITHYQRLLNYIKPDYVHVL-LDGRIV 224 (243)
T ss_pred HHHHHHHHHHHC-CcEEEEEEecHHHHHhhcCCeEEEE-eCCEEE
Confidence 345666666543 444444332111 1123 4666777 478764
No 283
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=20.11 E-value=3.5e+02 Score=23.53 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecccc
Q 022174 20 DDVSTNLATAERLVRAAHGKGANIILIQELF 50 (301)
Q Consensus 20 ~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~ 50 (301)
.+.+++++.+.+.++.|++.|..+.+-+|.+
T Consensus 112 ~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 112 TTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 3467889999999999999999887778855
No 284
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=20.07 E-value=2.9e+02 Score=23.91 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=33.5
Q ss_pred HHHHHhCCCcEEEecccccCcccCCccchHHHhhcCCCCCChhHHHHHHHHHHhCcEEee-eeeecCCCeeeEEEEEEcC
Q 022174 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDA 111 (301)
Q Consensus 33 i~~A~~~~~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~-G~~~~~~~~~yN~~~~i~~ 111 (301)
+..|...+++++++-|-.. ....... ....+.|.++++ .+..+++ ..-...-..+-+..+++ .
T Consensus 154 Laral~~~p~iLlLDEPt~------gLD~~~~--------~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~~l-~ 217 (264)
T PRK13546 154 FSINITVNPDILVIDEALS------VGDQTFA--------QKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAWI-E 217 (264)
T ss_pred HHHHHhhCCCEEEEeCccc------cCCHHHH--------HHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEEEE-E
Confidence 4445556788888888221 1111111 134566666654 3545444 33211111334556677 4
Q ss_pred CCCee
Q 022174 112 DGSDL 116 (301)
Q Consensus 112 ~G~i~ 116 (301)
+|++.
T Consensus 218 ~G~i~ 222 (264)
T PRK13546 218 GGKLK 222 (264)
T ss_pred CCEEE
Confidence 78764
No 285
>PRK14014 putative acyltransferase; Provisional
Probab=20.03 E-value=1.3e+02 Score=26.82 Aligned_cols=25 Identities=20% Similarity=0.095 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEecccc
Q 022174 26 LATAERLVRAAHGKGANIILIQELF 50 (301)
Q Consensus 26 ~~~~~~~i~~A~~~~~dlvvfPE~~ 50 (301)
.+.+.+.+++.++.+..+++|||..
T Consensus 160 ~~~~~~a~~~~~~~~~~l~IFPEGT 184 (301)
T PRK14014 160 LETTRRACEKFKRMPTTIVNFVEGT 184 (301)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccce
Confidence 4455555665556678899999964
Done!