BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022175
(301 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10107|MRA1_SCHPO Probable ribosomal RNA small subunit methyltransferase mra1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mra1 PE=1 SV=2
Length = 359
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/190 (50%), Positives = 124/190 (65%), Gaps = 11/190 (5%)
Query: 68 VVHEMEGIP---IAPSDQNTKRPGVIFVLEKASLEVAKVGKS----YQILNSDDHSNFLR 120
V M IP I D T+R +I VL++A LE+ KVGK+ YQ+LN DDH L+
Sbjct: 128 VTTHMAPIPARSIGSHDTTTQR--LIVVLDQACLEIYKVGKAKDAKYQLLNCDDHQGILK 185
Query: 121 RNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRF 180
+ N+N A RPDI HQ LL++LDS L KAGRLQ VY+ T K VL EV P VR+PRT+KRF
Sbjct: 186 KLNRNIAQARPDITHQCLLTLLDSPLNKAGRLQ-VYIHTAKKVLIEVNPSVRIPRTFKRF 244
Query: 181 AGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASI 240
+G+M+QLL KLSI +V EKLL+VIKNPVT YLP N RK S+ + V R Y+ ++
Sbjct: 245 SGLMVQLLHKLSIRSVNGNEKLLKVIKNPVTDYLPPNCRKATLSFDAPT-VPPRKYLETL 303
Query: 241 SDDDNLVFVV 250
+ ++ +
Sbjct: 304 QPNQSVCIAI 313
>sp|Q9XX15|NEP1_CAEEL Ribosomal RNA small subunit methyltransferase nep-1
OS=Caenorhabditis elegans GN=Y39A1A.14 PE=3 SV=1
Length = 231
Score = 171 bits (434), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 114/159 (71%), Gaps = 2/159 (1%)
Query: 92 VLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGR 151
VLE SLE AKVG Y IL+SD H+NFLR+ K+PADYRPDI+HQ LL++LDS L +AG+
Sbjct: 31 VLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRAGK 90
Query: 152 LQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVT 211
L+ V+ RT K VL +V P R+PRT+ RF G+M+QLL KLSI A +KL+ V+KNPV+
Sbjct: 91 LR-VFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPVS 149
Query: 212 QYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVV 250
+LPV SRK+ S++ +L M N + + D+ LV ++
Sbjct: 150 NHLPVGSRKMLMSFNVPELT-MANKLVAPETDEPLVLII 187
>sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus
GN=Emg1 PE=1 SV=1
Length = 244
Score = 168 bits (425), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 115/173 (66%), Gaps = 9/173 (5%)
Query: 89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
+I VLE ASLE KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct: 43 LIVVLEGASLETVKVGKTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNR 102
Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
AG LQ VY+ T K VL EV P R+PRT+ RF G+M+QLL KLS+ A +KLL+VIKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161
Query: 209 PVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYG 261
PV+ + PV KIG S+S E + +R V S D +VFVV A+ +G
Sbjct: 162 PVSDHFPVGCMKIGTSFSVEDISDIRELVPS---SDPVVFVV-----GAFAHG 206
>sp|Q06287|NEP1_YEAST Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=EMG1 PE=1
SV=1
Length = 252
Score = 164 bits (415), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 128/187 (68%), Gaps = 16/187 (8%)
Query: 75 IPIAPS-----DQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNN 123
+P AP D+ TKR +I VL ASLE K+ G Y +LN DDH L++
Sbjct: 24 VPQAPPVLTSKDKITKR--MIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMG 81
Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
++ ++ RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+
Sbjct: 82 RDISEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGL 140
Query: 184 MLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDD 243
M+QLL KLSI +V EKLL+VIKNP+T +LP RK+ S+ + ++++++Y+ + DD
Sbjct: 141 MVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAP-VIRVQDYIEKLDDD 199
Query: 244 DNL-VFV 249
+++ VFV
Sbjct: 200 ESICVFV 206
>sp|Q92979|NEP1_HUMAN Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens
GN=EMG1 PE=1 SV=4
Length = 244
Score = 164 bits (415), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 114/173 (65%), Gaps = 9/173 (5%)
Query: 89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
+I VLE ASLE KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct: 43 LIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNR 102
Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
AG LQ VY+ T K VL EV P R+PRT+ RF G+M+QLL KLS+ A +KLL+VIKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161
Query: 209 PVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYG 261
PV+ + PV K+G S+S + +R V S D +VFVV A+ +G
Sbjct: 162 PVSDHFPVGCMKVGTSFSIPVVSDVRELVPS---SDPIVFVV-----GAFAHG 206
>sp|Q9P8P7|NEP1_CANAX Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida
albicans GN=NEP1 PE=3 SV=1
Length = 267
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 129/187 (68%), Gaps = 16/187 (8%)
Query: 75 IPIAPS-----DQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNN 123
+P+ P+ D+ T+R +I VL +A LE K+ G + +LN DDH LR+
Sbjct: 39 VPVQPTALTSRDKTTQR--LIVVLSQACLETYKMNSGGPGGDRFALLNCDDHQGLLRKMG 96
Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
++ A+ RPDI HQ LL++LDS + KAGRLQ VY++T +GVL EV P VR+PRT+KRF+G+
Sbjct: 97 RDIAEARPDITHQCLLTLLDSPINKAGRLQ-VYIQTARGVLIEVNPSVRIPRTFKRFSGL 155
Query: 184 MLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDD 243
M+QLL KLSI + +E LL+VIKNP+T +LP RK+ S+ +E L ++++YV ++ ++
Sbjct: 156 MVQLLHKLSIRSENSKEVLLKVIKNPITDHLPTKCRKVTLSFDAE-LKRVQDYVTTLDEN 214
Query: 244 DNL-VFV 249
+++ VFV
Sbjct: 215 ESICVFV 221
>sp|Q9W4J5|NEP1_DROME Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila
melanogaster GN=CG3527 PE=3 SV=2
Length = 252
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 112/180 (62%), Gaps = 11/180 (6%)
Query: 89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
+I VLE A LE KV ++++LN DDH+ +R+N ++P RPDI HQ LL + DS L +
Sbjct: 43 LIIVLEGAQLETVKVHNTFELLNCDDHAGIMRKNQRDPGSCRPDITHQCLLMLFDSPLNR 102
Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
AG LQ V+VRT+ VL E+ P R+PRT+KRFAG+M+QLL K I A +L+ VIKN
Sbjct: 103 AGLLQ-VFVRTEHNVLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKN 161
Query: 209 PVTQYLPVNSRKIGFSYSSEKLVKMRNYV-----ASISDDDNLVFVVCSEVISAYIYGDL 263
P+T ++PV +K S+S + L R+ V S S D+ +V VI A+ +G L
Sbjct: 162 PITDHVPVGCKKYAMSFSGKLLPNCRDLVPHGDETSASYDEPVVI-----VIGAFAHGVL 216
>sp|Q96UP2|NEP1_CANGA Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=NEP1 PE=3 SV=1
Length = 229
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 101/157 (64%), Gaps = 3/157 (1%)
Query: 74 GIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKS-YQILNSDDHSNFLRRNNKNPADYRPD 132
G P S + P + VL +ASLE +LN DDH LR+ ++ A+ RPD
Sbjct: 10 GGPNNSSVTKKQEPRLYVVLCEASLETYTSNDHRTSLLNCDDHQGILRKMGRDIAEARPD 69
Query: 133 IVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLS 192
I HQ LL++LDS + KAG LQ VY+ T K VL EV P VR+PRT+KRF+G+M+QLL KLS
Sbjct: 70 ITHQCLLTLLDSPINKAGLLQ-VYILTKKNVLIEVNPSVRIPRTFKRFSGLMVQLLHKLS 128
Query: 193 ITAV-GKREKLLRVIKNPVTQYLPVNSRKIGFSYSSE 228
I ++ LLRV+KNPVT+YLP + RK+ S+ +E
Sbjct: 129 IRSMESSNTHLLRVVKNPVTKYLPADCRKVTLSFDAE 165
>sp|Q5JI44|NEP1_PYRKO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=nep1 PE=3 SV=1
Length = 220
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 10/157 (6%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
IL+S H L++ RPDIVH LL+ L+S K G L+ VYV T + +K
Sbjct: 39 ILDSTYHHAALKKLPDGDRRGRPDIVHICLLNALESIANKEGFLR-VYVHTRNDEVIHIK 97
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLP-VNSRKIGFSYSS 227
P RLPR Y RF G+M L +K AV + +LLR+ K P+ + +N + +
Sbjct: 98 PETRLPRNYNRFLGLMESLFKK---GAVPEGLELLRIEKKPLESLIEDINPDTVFIMHEE 154
Query: 228 EKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLF 264
+L++ R++ ++ N V VV + +GD
Sbjct: 155 GELIRPRSFGEILASHQNPVVVV-----GGFPHGDFM 186
>sp|O50087|NEP1_PYRHO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=nep1 PE=3 SV=1
Length = 229
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
IL+S H LR+ RPDIVH LL+ LDS L K RL+ VYV T + +K
Sbjct: 44 ILDSTYHHAALRQLEDGERRGRPDIVHICLLNALDSILNKEDRLR-VYVHTRNDYVIYIK 102
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYL 214
P RLPR Y RF G+M L +K AV + +LLR+ K + + +
Sbjct: 103 PETRLPRNYNRFIGLMENLFEK---GAVPEDLELLRMEKKTLNELI 145
>sp|Q9V0M0|NEP1_PYRAB Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
abyssi (strain GE5 / Orsay) GN=nep1 PE=3 SV=1
Length = 232
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
IL+S H L++ RPDIVH LL+ LDS L K RL+ VYV T + +K
Sbjct: 44 ILDSTYHHAALKQLEDGERRGRPDIVHICLLNALDSILNKEDRLR-VYVHTRNDYVIYIK 102
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRV 205
P RLPR Y RF G+M L +K AV + +LLR+
Sbjct: 103 PETRLPRNYNRFIGLMESLFEK---GAVPEDLELLRL 136
>sp|Q57977|NEP1_METJA Ribosomal RNA small subunit methyltransferase Nep1
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=nep1 PE=1
SV=1
Length = 205
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 19/151 (12%)
Query: 92 VLEKASLEVA------KVGKS----YQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSI 141
+L K++LE+ K+ KS Y IL+S+ H + + RPDI+H +LL+I
Sbjct: 6 ILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNI 65
Query: 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREK 201
LDS + +L +Y+ T + ++ P RLPR Y RF G+M ++L+ G+R
Sbjct: 66 LDSPINHEKKLN-IYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLK-------GERNH 117
Query: 202 LLRVIKNPVTQYL-PVNSRKIGFSYSSEKLV 231
L+++ + + L +N++KI + KL
Sbjct: 118 LIKMEEKTLEDLLNEINAKKIAIMTKTGKLT 148
>sp|A3DNG9|NEP1_STAMF Ribosomal RNA small subunit methyltransferase Nep1
OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1) GN=nep1 PE=3 SV=1
Length = 230
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLL 188
RPDIVH +LL+ L+S L K G L+ +Y+ T G + VKP R+PR Y RF G+M QLL
Sbjct: 65 RPDIVHISLLNALESPLNKEGYLR-IYIHTYPGHIIFVKPETRIPRNYNRFVGLMEQLL 122
>sp|Q8U1E6|NEP1_PYRFU Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=nep1 PE=3 SV=2
Length = 223
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
IL+S H LR+ RPDIVH LL+ LDS L K RL+ VYV T + V
Sbjct: 42 ILDSTYHHAALRQLEDGERRGRPDIVHICLLNALDSILNKEDRLR-VYVHTRNDEVIYVD 100
Query: 169 PHVRLPRTYKRFAGIMLQLLQK 190
P RLPR Y RF G+M L +K
Sbjct: 101 PSTRLPRNYNRFIGLMESLFEK 122
>sp|C6A116|NEP1_THESM Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=nep1 PE=3 SV=1
Length = 220
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
+L+S H L+ RPDIVH L++ L+S L K G+L+ VYV T + +K
Sbjct: 39 LLDSTYHHTALKSLKDGERRGRPDIVHLCLINALESILNKEGKLR-VYVHTRNNEVIYIK 97
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRV 205
P RLPR Y RF G+M L + + K LLR+
Sbjct: 98 PETRLPRNYNRFVGLMESLFKN---RVIPKDLALLRI 131
>sp|Q9YES9|NEP1_AERPE Ribosomal RNA small subunit methyltransferase Nep1 OS=Aeropyrum
pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC
100138 / K1) GN=nep1 PE=3 SV=1
Length = 224
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 99 EVAKVGKSYQILNSD---DHSNFLRRNNKNPADY---RPDIVHQALLSILDSRLTKAGRL 152
+V K + Y I D D S + PA + RPDI+H ALL+ DS L G L
Sbjct: 22 QVLKSARRYGIEPGDLLLDKSLHYNAMAELPAKWKRGRPDILHVALLTTTDSPLYNEGLL 81
Query: 153 QAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQ 212
+ +Y + G LFEV VR+P+ Y+RF G++ QLL+ + G+ E L+R+ + +
Sbjct: 82 R-IYFQVYDGRLFEVGTGVRVPKNYERFRGLVAQLLKTERVPP-GEGEALIRLHSRSLAE 139
Query: 213 YLPVNSRKI 221
++ R I
Sbjct: 140 FVEREGRFI 148
>sp|B6YTM6|NEP1_THEON Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermococcus
onnurineus (strain NA1) GN=nep1 PE=3 SV=1
Length = 219
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
+L+S H + L++ RPDIVH LL+ L+S K G+L+ VYV T + +K
Sbjct: 39 LLDSTYHHSALKKLEDGERRGRPDIVHVCLLNALESIANKEGKLR-VYVHTRNDEVIYIK 97
Query: 169 PHVRLPRTYKRFAGIMLQLLQ 189
P R+PR Y RF G+M L +
Sbjct: 98 PETRIPRNYNRFVGLMESLFK 118
>sp|A0B5L3|NEP1_METTP Ribosomal RNA small subunit methyltransferase Nep1 OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=nep1 PE=3 SV=1
Length = 226
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 108 QILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEV 167
IL++ H + +R RPDIVH LL L+S L + G+L+ VY+ T + +
Sbjct: 38 SILDASLHHSAMRALPMGDRRGRPDIVHVFLLVALESVLNRVGQLR-VYIHTRNNEMITI 96
Query: 168 KPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLL 203
P R+P+ Y RF G+M L +K S V +RE L+
Sbjct: 97 DPTTRIPKNYPRFVGLMESLFEKGS---VPEREPLI 129
>sp|A3MWJ1|NEP1_PYRCJ Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=nep1 PE=3 SV=1
Length = 221
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
+L+ H + + +K RPDIVHQ LL+ S L +AGR +A +V T + VK
Sbjct: 38 LLDRARHHVAMAKLDKAERRGRPDIVHQVLLAFQYSLLNRAGRGRA-FVHTVGDYIISVK 96
Query: 169 PHVRLPRTYKRFAGIMLQLLQ 189
P R+P+ Y F +M QL +
Sbjct: 97 PETRVPKNYNNFVSLMEQLFK 117
>sp|Q97WJ0|NEP1_SULSO Ribosomal RNA small subunit methyltransferase Nep1 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=nep1 PE=3 SV=2
Length = 218
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDI+HQALL IL + K +++ T + + +V P++R P+ Y RF G+M QLL+
Sbjct: 61 RPDILHQALLVILTDPVIKGD----IFIHTIQSKIIKVNPNMRPPKNYLRFIGLMEQLLK 116
>sp|O29524|NEP1_ARCFU Ribosomal RNA small subunit methyltransferase Nep1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=nep1 PE=1 SV=1
Length = 219
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDIVHQ LL +LDS L R VYV T G + V RLPR Y RF G+M +L +
Sbjct: 61 RPDIVHQCLLLLLDSPL----RDFEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFE 116
Query: 190 KLSITA 195
+ ITA
Sbjct: 117 ERRITA 122
>sp|B1YD95|NEP1_PYRNV Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=nep1 PE=3 SV=1
Length = 221
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 56/124 (45%), Gaps = 21/124 (16%)
Query: 66 DVVVHEMEGIPIAPSD--QNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNN 123
++V E+ P SD + KRPG I L++A A G + RR
Sbjct: 11 ELVPREIWSHPAVASDARRRGKRPGEIL-LDRARHHPAMAGLE----------DGARRG- 58
Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
RPDIVHQ LL S L + G L VY+ T + +VKP R+P+ Y F +
Sbjct: 59 ------RPDIVHQVLLVFQYSLLNRRG-LGRVYIHTRGDYIIQVKPQTRIPKNYNNFVSL 111
Query: 184 MLQL 187
M QL
Sbjct: 112 MEQL 115
>sp|Q96YP4|NEP1_SULTO Ribosomal RNA small subunit methyltransferase Nep1 OS=Sulfolobus
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /
7) GN=nep1 PE=3 SV=1
Length = 219
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLL 188
RPDIVH ALL L ++ G VY+ T G + V +R P+ Y RF G+ QLL
Sbjct: 61 RPDIVHLALLMFLTEKVPIKGE---VYIHTIDGKIIYVNSDMRPPKNYNRFIGLAEQLL 116
>sp|Q8ZW45|NEP1_PYRAE Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=nep1 PE=3 SV=1
Length = 221
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLL 188
RPDIVHQ LL+ S L K G L Y+ T + V P R+P+ Y F ++ QL
Sbjct: 59 RPDIVHQVLLAFQYSLLAKRG-LGKAYIHTRDDYVIAVSPEARVPKNYNNFVALIEQLF 116
>sp|Q9HJ48|NEP1_THEAC Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=nep1 PE=3 SV=2
Length = 222
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDI++ L +S L +L+ YV T + + P R+P++Y RF G+ L +
Sbjct: 62 RPDIIYLLLEMTQESILNHKNQLRT-YVHTRNNQVIRISPITRMPKSYNRFIGLFEDLFE 120
Query: 190 KLSITAVGK 198
K IT GK
Sbjct: 121 KRIITNNGK 129
>sp|Q979E4|NEP1_THEVO Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=nep1 PE=3 SV=1
Length = 222
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDI++ L +S L + L+ Y+ T + ++ P R+P++Y RF G+ L +
Sbjct: 62 RPDIIYILLEMAQESILNRKNLLRT-YIHTRNDFVIKISPITRMPKSYNRFIGLFEDLFE 120
Query: 190 KLSITAVGK 198
K IT GK
Sbjct: 121 KEIITNNGK 129
>sp|A1RVH0|NEP1_PYRIL Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=nep1 PE=3
SV=1
Length = 221
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQL 187
RPDIVHQ LL S L K G L +Y+ T V+ R+P+ Y F +M QL
Sbjct: 59 RPDIVHQVLLVFQYSLLNKRG-LGRIYIHTQGDYTIYVRWETRIPKNYNNFVSLMEQL 115
>sp|A4WMI3|NEP1_PYRAR Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=nep1 PE=3
SV=1
Length = 221
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDIVHQALL S L G L +Y+ T + V P R+P+ Y F ++ QL
Sbjct: 59 RPDIVHQALLVFQYSLLAARG-LGRMYIHTLGDYVISVDPSTRVPKNYNNFVSLVEQLFA 117
Query: 190 KLSITAVGK 198
+ G+
Sbjct: 118 TGRVPPEGR 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,251,763
Number of Sequences: 539616
Number of extensions: 4898454
Number of successful extensions: 98895
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 856
Number of HSP's that attempted gapping in prelim test: 58932
Number of HSP's gapped (non-prelim): 23674
length of query: 301
length of database: 191,569,459
effective HSP length: 117
effective length of query: 184
effective length of database: 128,434,387
effective search space: 23631927208
effective search space used: 23631927208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)