Query 022175
Match_columns 301
No_of_seqs 148 out of 243
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 08:36:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3073 Protein required for 1 100.0 5.8E-76 1.3E-80 529.3 13.4 225 38-287 3-230 (236)
2 PF03587 EMG1: EMG1/NEP1 methy 100.0 1.2E-70 2.7E-75 492.9 13.0 194 91-286 1-201 (202)
3 PRK04171 ribosome biogenesis p 100.0 1.5E-68 3.3E-73 485.9 13.6 200 63-287 9-216 (222)
4 COG1756 Mra1 Uncharacterized c 100.0 7.4E-61 1.6E-65 434.2 14.9 191 91-286 19-216 (223)
5 PF02590 SPOUT_MTase: Predicte 86.2 0.5 1.1E-05 41.5 2.2 62 210-276 60-130 (155)
6 PRK00103 rRNA large subunit me 84.8 0.78 1.7E-05 40.5 2.7 70 212-286 62-142 (157)
7 COG1576 Uncharacterized conser 80.9 2 4.3E-05 38.4 3.8 46 210-257 60-109 (155)
8 TIGR00246 tRNA_RlmH_YbeA rRNA 75.0 4.3 9.4E-05 35.7 4.1 65 217-286 65-139 (153)
9 PRK02135 hypothetical protein; 45.1 2.2E+02 0.0048 26.6 9.7 141 127-277 25-183 (201)
10 PF01011 PQQ: PQQ enzyme repea 40.1 31 0.00067 22.9 2.5 17 155-171 3-19 (38)
11 PF04013 Methyltrn_RNA_2: Puta 35.7 2.3E+02 0.005 26.5 8.2 149 122-277 19-183 (199)
12 PF02202 Tachykinin: Tachykini 26.0 9.3 0.0002 20.5 -1.4 8 177-184 4-11 (11)
13 PTZ00469 60S ribosomal subunit 26.0 47 0.001 30.7 2.0 112 171-299 16-139 (187)
14 cd00281 DAP_dppA Peptidase M55 25.1 1.3E+02 0.0028 29.1 4.9 101 175-282 26-145 (265)
15 PF04889 Cwf_Cwc_15: Cwf15/Cwc 22.7 34 0.00074 32.4 0.5 39 84-122 202-242 (244)
16 PF03755 YicC_N: YicC-like fam 22.6 78 0.0017 27.5 2.7 39 149-190 16-54 (159)
17 PTZ00195 60S ribosomal protein 22.4 55 0.0012 30.6 1.8 108 172-299 17-147 (198)
18 PF13570 PQQ_3: PQQ-like domai 21.9 1E+02 0.0022 20.3 2.6 27 142-171 14-40 (40)
No 1
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-76 Score=529.34 Aligned_cols=225 Identities=52% Similarity=0.817 Sum_probs=206.5
Q ss_pred hhcccccccccCCcCccCCCcccccchhhhhhhhhcCCCCCCCCcCCCCCcEEEEecCCccceeecCCeeeecCchhhHH
Q 022175 38 NDSGKRAKLEKTSQNDNKKGEEDGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSN 117 (301)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~livVLe~A~LE~~K~gk~~~LLn~d~H~~ 117 (301)
.++...++.++++...+++|+| ..| ..++++||||++|+||++|+| +|+|||||+|.+
T Consensus 3 ~e~~~~~~~~~~~~~k~d~~~~-----------------~l~----~~~~~~ivVL~~a~le~~Kvg-~y~ll~~d~h~~ 60 (236)
T KOG3073|consen 3 VESSRKAKKEKADRAKEDNDEE-----------------ALP----KTKKRLIVVLEGASLETAKVG-KYQLLNSDDHAN 60 (236)
T ss_pred chhhhhcccccccccccCcccc-----------------ccc----ccCCcEEEEecCCCchhhhhh-heeeeccchhhH
Confidence 3445556677777777777764 112 467899999999999999999 899999999999
Q ss_pred HHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCCeEEEEcCCCCCCCChhhHHHHHHHHHHhCcccccc
Q 022175 118 FLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVG 197 (301)
Q Consensus 118 ~mrkl~~~~~~gRPDIvHq~LL~lLDSPLNKaG~Lq~VYIhT~~gvlIeV~P~~RIPRtykRF~GLM~QLL~k~~I~a~~ 197 (301)
+++|+++++.++||||+|||||+||||||||||+|| |||||.+|+||||||++||||||+||+|||+|||||++|++.+
T Consensus 61 ~lkk~~rdp~d~rpDitHQ~Ll~LlDSPlNkAgkLq-Vyi~T~knvLiEvnp~~rIPrtfkrfsglMvqLLhKlsIra~d 139 (236)
T KOG3073|consen 61 FLKKNNRDPADYRPDITHQCLLMLLDSPLNKAGKLQ-VYIHTAKNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLSIRAVD 139 (236)
T ss_pred HHHhccCCHHhcCCcHHHHHHHHHhcCcccccceeE-EEEEccCceEEEecccccCCCCHHHHHHHHHHHHHHheEeccC
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cccceEEEEecccccccCCCCeEEEEeccCccccchhhHHhhhCCCCCeEEEECccccCCCcCCCcceeeee-ecccchh
Q 022175 198 KREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLFFHIYI-LSDINLY 276 (301)
Q Consensus 198 ~~e~LLkviknpLtd~Lp~g~~kI~LS~~~g~~v~l~e~v~~l~~~~~ivfvVGafahGdf~~~d~~~~~~i-~S~~~l~ 276 (301)
+.++||+|||||+++|||+||++|+|||++....+.++|+..+.++.++||||||||||+ +.++|+++.+ ||||+||
T Consensus 140 ~~~kLlkVvKNPVtdHlPv~~~Ki~lSf~~p~l~~~~~lv~~~~~~~~~v~~Iga~ahg~--~~~ey~de~vsiSnYpLS 217 (236)
T KOG3073|consen 140 GTEKLLKVVKNPVTDHLPVNSRKIGLSFSGPKLSNVRDLVASLDDDDSVVFVIGAMAHGK--ISVEYVDEKVSISNYPLS 217 (236)
T ss_pred chHHHHHHhcCcccccCCCCccEEeecCCCcccccHHhhccccCCCCCEEEEEecccccc--cchhhhhhhcccccCcCc
Confidence 999999999999999999999999999986666669999999988889999999999996 5688999988 9999999
Q ss_pred h--hhhhhhhhhh
Q 022175 277 F--SCLSFHVRLV 287 (301)
Q Consensus 277 ~--a~~~~~~~~~ 287 (301)
| +|||||.++.
T Consensus 218 aa~~CsKi~~~~E 230 (236)
T KOG3073|consen 218 AALCCSKITSAFE 230 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 8 9999998874
No 2
>PF03587 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR005304 Members of this family are essential for 40S ribosomal biogenesis. They play a role in the methylation reaction of pre-rRNA processing. The structure of EMG1 has revealed that it is a novel member of the superfamily of alpha/beta knot fold methyltransferases [, ].; GO: 0008168 methyltransferase activity; PDB: 3BBE_B 3BBD_B 3BBH_B 2V3K_A 3OII_B 3OIJ_B 3OIN_A 2V3J_A 3O7B_A.
Probab=100.00 E-value=1.2e-70 Score=492.94 Aligned_cols=194 Identities=42% Similarity=0.596 Sum_probs=161.5
Q ss_pred EEecCCccceeecCCeeeecCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCCeEEEEcCC
Q 022175 91 FVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPH 170 (301)
Q Consensus 91 vVLe~A~LE~~K~gk~~~LLn~d~H~~~mrkl~~~~~~gRPDIvHq~LL~lLDSPLNKaG~Lq~VYIhT~~gvlIeV~P~ 170 (301)
|||++|+||+++.+.+++|||+|+|+++|++++++++||||||||||||++|||||||+|+|+ |||||.+|+||+|||+
T Consensus 1 ivL~~a~LE~v~~~~~~~LLd~~~H~~~m~k~~~~~k~~RPDIvH~~LL~lldSpLNk~G~L~-VYIhT~~~~lI~V~p~ 79 (202)
T PF03587_consen 1 IVLEEASLELVPRKPKYQLLDSSDHYNAMKKLPKDEKRGRPDIVHQCLLMLLDSPLNKAGKLQ-VYIHTIDNVLIEVSPQ 79 (202)
T ss_dssp EEEEEES--BEEGSCGCSB--HHHHCGGHTTTTTGGGCS-HHHHHHHHHHHHTSHHHHTT-EE-EEEEETTSEEEEE-TT
T ss_pred CCccCCeeeEecCCCCcCccchHHHHHHHHHcCCChhhcCcchHHHHHHHHhcChHHhCCcEE-EEEEecCCEEEEECCC
Confidence 799999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHhCcccccccccceEEEEecccccccCCCCeEEEEeccCccccchhhHHh-hh-CCCCCeEE
Q 022175 171 VRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVA-SI-SDDDNLVF 248 (301)
Q Consensus 171 ~RIPRtykRF~GLM~QLL~k~~I~a~~~~e~LLkviknpLtd~Lp~g~~kI~LS~~~g~~v~l~e~v~-~l-~~~~~ivf 248 (301)
+||||||+||+|||+|||++++|++++++++||++++|||++|||.|+++|+|| .+|+.+++.+|++ .+ ..+.+++|
T Consensus 80 ~RiPR~y~rF~gLm~qLL~~~~I~~~~~~~~Llkv~~~~l~~~l~~~~~~i~ls-~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (202)
T PF03587_consen 80 TRIPRNYNRFVGLMEQLLKKGKIPAEESGEPLLKVIKNPLTDLLPPGSRKILLS-EKGEKVDPKELVKEALLAGDEPVVF 158 (202)
T ss_dssp ----SSHHHHHHHHHHHHHHSEEEETTSTCEEEEEECS-HHHHCCCTCEEEEEE-TTSCEE-HHHHCC--TS-TTCCEEE
T ss_pred CcCCcCHHHHHHHHHHHHhcCcccCCCCCCeeEEEEeCCHHHhcCCCCeEEEEc-CCCCcCCHHHHHhhhhccCCCCeEE
Confidence 999999999999999999999999998899999999999999999999999999 5588999999997 33 34689999
Q ss_pred EECccccCCCcCCCcce---eeeeecccchhh--hhhhhhhhh
Q 022175 249 VVCSEVISAYIYGDLFF---HIYILSDINLYF--SCLSFHVRL 286 (301)
Q Consensus 249 vVGafahGdf~~~d~~~---~~~i~S~~~l~~--a~~~~~~~~ 286 (301)
+|||||||+|+....+. +.+.||+|+||+ .|++.+.++
T Consensus 159 ~IGaf~~Gdf~~~~~~~~~~~~~sIs~~~Lsa~~v~~ri~~~~ 201 (202)
T PF03587_consen 159 VIGAFPHGDFSEEVDYVEADEEISISDYPLSAWTVCSRICSAF 201 (202)
T ss_dssp EEE-SSSS-SCCCCCCHSCEEEEESSSS---HHHHHHHHHHHH
T ss_pred EEeeecCCCCcccccccccceEEEEeCCChHHHHHHHHHHHHh
Confidence 99999999999774444 445599999998 888887653
No 3
>PRK04171 ribosome biogenesis protein; Provisional
Probab=100.00 E-value=1.5e-68 Score=485.95 Aligned_cols=200 Identities=26% Similarity=0.340 Sum_probs=178.5
Q ss_pred chhhhhhhhhcCCCCCCCCcCCCCCcEEEEecCCccceeecCC--eeeecCchhhHHHHHhCCCCCCCCCCcHHHHHHHH
Q 022175 63 EEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLS 140 (301)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~~~~~~~~livVLe~A~LE~~K~gk--~~~LLn~d~H~~~mrkl~~~~~~gRPDIvHq~LL~ 140 (301)
++++.+|.+|.+.|...++++ |+|| +++|||+|+|+++|++++++++||||||||||||+
T Consensus 9 s~LElvP~ei~~hp~v~~~a~------------------rr~K~p~~~LLd~~~H~~~m~kl~~~~~rgRPDIvHq~LL~ 70 (222)
T PRK04171 9 SALELVPREIWNHPAVVKNAR------------------RRGKKPEEMLLDSSLHYHAMKKLEDKEKRGRPDIVHISLLV 70 (222)
T ss_pred cccccCCHHHhcCcHHHhhHH------------------HcCCChhhhccChHHHHHHHHhCccchhccCCCHHHHHHHH
Confidence 567888888888888776641 2345 55699999999999999999999999999999999
Q ss_pred hhcchhhhcCCccEEEEEecCCeEEEEcCCCCCCCChhhHHHHHHHHHHhCcccccccccceEEEEecccccccCCC--C
Q 022175 141 ILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVN--S 218 (301)
Q Consensus 141 lLDSPLNKaG~Lq~VYIhT~~gvlIeV~P~~RIPRtykRF~GLM~QLL~k~~I~a~~~~e~LLkviknpLtd~Lp~g--~ 218 (301)
+|||||||+|+|+ |||||.+|+||+|||++||||||+||+|||+|||++++|+++ +++||++++|||++|||.+ +
T Consensus 71 lldSpLNk~G~L~-VYIhT~~~~lI~V~P~~RiPR~y~rF~gLM~qLL~k~~I~~~--~~~Llkv~k~~l~~~l~~~~~~ 147 (222)
T PRK04171 71 ALDSPLNKEGKLR-VYIHTRDDKVIYVNPETRLPKNYNRFVGLMEQLLKEGRVPPN--GEPLLEIENKSLEELLEEIGPD 147 (222)
T ss_pred HhcChhhhcCCeE-EEEEecCCEEEEECCCCcCCCCHHHHHHHHHHHHHhCccCCC--CcchheeecCcHHHhccccCCC
Confidence 9999999999999 999999999999999999999999999999999999999986 7899999999999999997 8
Q ss_pred eEEEEeccCccccchhhHHhhhCCCCCeEEEECccccCCCcCC-Ccceeeee-ecccchhh--hhhhhhhhhh
Q 022175 219 RKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYG-DLFFHIYI-LSDINLYF--SCLSFHVRLV 287 (301)
Q Consensus 219 ~kI~LS~~~g~~v~l~e~v~~l~~~~~ivfvVGafahGdf~~~-d~~~~~~i-~S~~~l~~--a~~~~~~~~~ 287 (301)
++|+|| ++|+.+++.+|++ .+.++||+|||||||+|+.. ..+.++++ ||+|+|++ .|+++|.+.-
T Consensus 148 ~~i~lS-~~g~~~~~~~~~~---~~~~~~~vIGaf~hG~f~~~~~~~~~~~iSIs~~pLsa~~v~~ri~~a~E 216 (222)
T PRK04171 148 RIILLS-EKGELVKPKELGK---ENENIAVGIGGFPHGDFSEKVLELAKKKYSIYGEPLTAWTVVCRVIAAYE 216 (222)
T ss_pred cEEEEC-CCCcccCHHHHhh---ccCCcEEEEccccCCCcchhhHhhcCeEEEEeCCChHHHHHHHHHHHHHH
Confidence 999999 6799999999997 57889999999999998633 11344555 99999998 8999987764
No 4
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.4e-61 Score=434.22 Aligned_cols=191 Identities=34% Similarity=0.485 Sum_probs=172.3
Q ss_pred EEecCCccceeec-CC--eeeecCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCCeEEEE
Q 022175 91 FVLEKASLEVAKV-GK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEV 167 (301)
Q Consensus 91 vVLe~A~LE~~K~-gk--~~~LLn~d~H~~~mrkl~~~~~~gRPDIvHq~LL~lLDSPLNKaG~Lq~VYIhT~~gvlIeV 167 (301)
++...|+|+.+|+ |+ ...|||+++||++|+++...++||||||+|||||++|||||||+|+|+ |||||++|.||+|
T Consensus 19 i~~hpav~~~akrrgk~p~~~iLd~~~hh~am~~l~~~e~RgRPDI~H~~LL~~lDSplnk~~~L~-vYIHT~~~~vI~v 97 (223)
T COG1756 19 IVNHPAVLRDAKRRGKRPEKIILDSSYHHTAMKKLEDRERRGRPDIVHQCLLTLLDSPLNKEGKLR-VYIHTRNDYVIEV 97 (223)
T ss_pred HhcCHHHHHHHHHhCCCCCcEEEecccCHHHHHHhcChhhcCCCchHHHHHHHHhhccccccccee-EEEEecCCEEEEE
Confidence 3444455555554 33 678999999999999998888999999999999999999999999999 9999999999999
Q ss_pred cCCCCCCCChhhHHHHHHHHHHhCcccccccccceEEEEecccccccCCCC-eEEEEeccCccccchhhHHhhhCCCCCe
Q 022175 168 KPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNS-RKIGFSYSSEKLVKMRNYVASISDDDNL 246 (301)
Q Consensus 168 ~P~~RIPRtykRF~GLM~QLL~k~~I~a~~~~e~LLkviknpLtd~Lp~g~-~kI~LS~~~g~~v~l~e~v~~l~~~~~i 246 (301)
||.+|+||||+||+|||+|||++++|++++ +++||+++++||++|||.++ ++|.|| +.|..+.+.+|++.+.++ +
T Consensus 98 ~p~~R~Prny~RFiGLmeqLlk~~~i~~~~-~e~Ll~v~~~~l~d~l~~~~~~~ill~-e~G~~~~p~~~~~~l~~~--i 173 (223)
T COG1756 98 NPETRLPRNYNRFIGLMEQLLKKGRIPSNG-GETLLEVEKNPLTDLLPENNKVTILLH-EKGELIPPKELISLLLKG--I 173 (223)
T ss_pred CCCccCCCCHHHHHHHHHHHHhcCCcCCCC-CcEeeeeecCcHHHhccccCceEEEEc-CCCCccCHHHHHhhhccC--c
Confidence 999999999999999999999999999974 89999999999999999987 789999 678899999999887544 8
Q ss_pred EEEECccccCCCcCCCcceeeee-ecccchhh--hhhhhhhhh
Q 022175 247 VFVVCSEVISAYIYGDLFFHIYI-LSDINLYF--SCLSFHVRL 286 (301)
Q Consensus 247 vfvVGafahGdf~~~d~~~~~~i-~S~~~l~~--a~~~~~~~~ 286 (301)
+|+|||||||+|.++++++.+++ +++++|++ +||+|+-+.
T Consensus 174 ~v~iG~fp~Gdf~~~~~~~~~~~si~~~pL~a~~v~~ki~~~~ 216 (223)
T COG1756 174 AVIIGGFPHGDFREETEFVAEKYSIYDEPLSAWSVCSKIVYAY 216 (223)
T ss_pred eEEEeccCCCcchhhhhhhcceeeecCCCccHHHHHHHHHHHH
Confidence 99999999999999999998777 99999998 999997554
No 5
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=86.23 E-value=0.5 Score=41.53 Aligned_cols=62 Identities=13% Similarity=0.236 Sum_probs=35.6
Q ss_pred cccccCCCCeEEEEeccCccccchhhHHhhhCC-----CCCeEEEECccccCCCcCCCcce---eeee-ecccchh
Q 022175 210 VTQYLPVNSRKIGFSYSSEKLVKMRNYVASISD-----DDNLVFVVCSEVISAYIYGDLFF---HIYI-LSDINLY 276 (301)
Q Consensus 210 Ltd~Lp~g~~kI~LS~~~g~~v~l~e~v~~l~~-----~~~ivfvVGafahGdf~~~d~~~---~~~i-~S~~~l~ 276 (301)
|...+++++.+|+|+ +.|+.++-.+|.+.+.+ ...++|+||| |+|- .+.+. +..+ +|...|+
T Consensus 60 il~~i~~~~~~i~Ld-~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG-~~G~---~~~~~~~a~~~lSLS~mTfp 130 (155)
T PF02590_consen 60 ILKKIPPNDYVILLD-ERGKQLSSEEFAKKLERWMNQGKSDIVFIIGG-ADGL---SEEVRKRADEKLSLSKMTFP 130 (155)
T ss_dssp HHCTSHTTSEEEEE--TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-B-TTB-----HHHHHH-SEEEES-SS---
T ss_pred HHhhccCCCEEEEEc-CCCccCChHHHHHHHHHHHhcCCceEEEEEec-CCCC---CHHHHhhcCceEEEecCCCc
Confidence 444567788999999 67999999999887743 3479999996 5552 22222 3444 7776666
No 6
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=84.80 E-value=0.78 Score=40.45 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=44.1
Q ss_pred cccCCCCeEEEEeccCccccchhhHHhhhCC----C-CCeEEEECccccCCCcCCCcc---eeeee-ecccchhh--hhh
Q 022175 212 QYLPVNSRKIGFSYSSEKLVKMRNYVASISD----D-DNLVFVVCSEVISAYIYGDLF---FHIYI-LSDINLYF--SCL 280 (301)
Q Consensus 212 d~Lp~g~~kI~LS~~~g~~v~l~e~v~~l~~----~-~~ivfvVGafahGdf~~~d~~---~~~~i-~S~~~l~~--a~~ 280 (301)
..+++++.+|+|+ +.|+..+-.+|.+.+.. . ..++|+||| |+|- ++.+ .|..+ +|...|.- |=-
T Consensus 62 ~~l~~~~~~i~LD-e~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG-a~G~---~~~v~~~a~~~lSLS~mTfpH~larl 136 (157)
T PRK00103 62 AALPKGARVIALD-ERGKQLSSEEFAQELERWRDDGRSDVAFVIGG-ADGL---SPAVKKRADQSLSLSKLTLPHQLVRV 136 (157)
T ss_pred hhCCCCCEEEEEc-CCCCcCCHHHHHHHHHHHHhcCCccEEEEEcC-cccc---CHHHHHhcCceEEeccCCCcHHHHHH
Confidence 3466677899999 77999999999877632 2 479999997 3443 2221 12233 66666653 444
Q ss_pred hhhhhh
Q 022175 281 SFHVRL 286 (301)
Q Consensus 281 ~~~~~~ 286 (301)
.++|.|
T Consensus 137 vL~EQl 142 (157)
T PRK00103 137 LLAEQL 142 (157)
T ss_pred HHHHHH
Confidence 444444
No 7
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=80.86 E-value=2 Score=38.42 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=35.6
Q ss_pred cccccCCCCeEEEEeccCccccchhhHHhhhC----CCCCeEEEECccccCC
Q 022175 210 VTQYLPVNSRKIGFSYSSEKLVKMRNYVASIS----DDDNLVFVVCSEVISA 257 (301)
Q Consensus 210 Ltd~Lp~g~~kI~LS~~~g~~v~l~e~v~~l~----~~~~ivfvVGafahGd 257 (301)
+...+++|+..|+|. ..|+..+-.+|...+. .+..++|+||| |.|-
T Consensus 60 il~~i~~~~~vi~Ld-~~Gk~~sSe~fA~~l~~~~~~G~~i~f~IGG-~~Gl 109 (155)
T COG1576 60 ILAAIPKGSYVVLLD-IRGKALSSEEFADFLERLRDDGRDISFLIGG-ADGL 109 (155)
T ss_pred HHHhcCCCCeEEEEe-cCCCcCChHHHHHHHHHHHhcCCeEEEEEeC-cccC
Confidence 455678899999999 5688898888887764 24569999997 5664
No 8
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=74.96 E-value=4.3 Score=35.71 Aligned_cols=65 Identities=9% Similarity=0.061 Sum_probs=41.1
Q ss_pred CCeEEEEeccCccccchhhHHhhhC----CCCCeEEEECccccCCCcCCCcce---eee-eecccchhh--hhhhhhhhh
Q 022175 217 NSRKIGFSYSSEKLVKMRNYVASIS----DDDNLVFVVCSEVISAYIYGDLFF---HIY-ILSDINLYF--SCLSFHVRL 286 (301)
Q Consensus 217 g~~kI~LS~~~g~~v~l~e~v~~l~----~~~~ivfvVGafahGdf~~~d~~~---~~~-i~S~~~l~~--a~~~~~~~~ 286 (301)
++.+|+|+ +.|+.++-.+|.+.+. ....++|+||| |+|- ++.+. |.. ++|...|.- |=-.++|.|
T Consensus 65 ~~~~i~LD-e~Gk~~sS~~fA~~l~~~~~~g~~i~FvIGG-a~G~---~~~v~~~a~~~lSLS~mTfpH~larlvL~EQi 139 (153)
T TIGR00246 65 KAHVVTLD-IPGKPWTTPQLADTLEKWKTDGRDVTLLIGG-PEGL---SPTCKAAAEQSWSLSKLTLPHPLVRVIVAESL 139 (153)
T ss_pred CCeEEEEc-CCCCcCCHHHHHHHHHHHhccCCeEEEEEcC-CCcC---CHHHHHhcCceEEeecCCCcHHHHHHHHHHHH
Confidence 36789999 7799999999988774 23469999997 3443 22221 122 267666663 444444443
No 9
>PRK02135 hypothetical protein; Provisional
Probab=45.13 E-value=2.2e+02 Score=26.58 Aligned_cols=141 Identities=13% Similarity=0.056 Sum_probs=81.2
Q ss_pred CCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecC----CeEEEEcC-CCC-CCCChhhHHHHHHHHHHhCc--cccc-c
Q 022175 127 ADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDK----GVLFEVKP-HVR-LPRTYKRFAGIMLQLLQKLS--ITAV-G 197 (301)
Q Consensus 127 ~~gRPDIvHq~LL~lLDSPLNKaG~Lq~VYIhT~~----gvlIeV~P-~~R-IPRtykRF~GLM~QLL~k~~--I~a~-~ 197 (301)
..||-||+=.|+.++|=---.-.--.. ||+.-.+ .+.|.+.. .+| +.-.=....+++..-|.... +... -
T Consensus 25 ~~GR~DilcR~v~sAlflSh~iR~Dv~-v~lvL~g~p~p~~tI~f~G~~lr~l~PDErs~a~~I~kAL~~~~~~~~~~~~ 103 (201)
T PRK02135 25 SAGRLDILCRCVNSAFFLSHDIRRDVR-VHLVLEGTPDPPKTIRFEGSELRRLNPDERSTAALIKKALDASEGMIGEQER 103 (201)
T ss_pred CccchhHHHHHHHHHHHHhcCccCCeE-EEEEEcCCCCCCeEEEEechhcccCCccHHHHHHHHHHHHhccccccccccc
Confidence 379999999999987721111122344 6666554 45555443 332 33344568888888887762 2110 0
Q ss_pred cccceEEEEecccccccCC---CCeEEEEeccCccccchhhHHhhhCCCCCeEEEECccccCCCcCCC-----cceeeee
Q 022175 198 KREKLLRVIKNPVTQYLPV---NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGD-----LFFHIYI 269 (301)
Q Consensus 198 ~~e~LLkviknpLtd~Lp~---g~~kI~LS~~~g~~v~l~e~v~~l~~~~~ivfvVGafahGdf~~~d-----~~~~~~i 269 (301)
...|=+.|-+..+.++|.. |...+-|+ ++|..+. + .....+.|||.| -|=.++..+ .+-.++|
T Consensus 104 e~~pGi~V~~~~fe~ll~~~~e~~~l~~L~-e~G~~i~--~----~~~~~~~~FvLg--DH~~~~~ee~~~L~~~ga~~i 174 (201)
T PRK02135 104 EVTPGIYVRRRGFEDLLEELAEGKTLYYLH-EDGEDIR--D----VEFPENPVFVLG--DHIGFTEEEENLLKRLGAEKI 174 (201)
T ss_pred ccCCCEEEecCCHHHHHHHHhcCCcEEEEe-CCCCchh--h----ccCCCCCEEEEe--CCCCCCHHHHHHHHHhCCeEE
Confidence 1234488889999998844 56788899 6676443 2 122345689999 333333222 2223455
Q ss_pred -ecccchhh
Q 022175 270 -LSDINLYF 277 (301)
Q Consensus 270 -~S~~~l~~ 277 (301)
|.-.+|-|
T Consensus 175 SlGP~~l~A 183 (201)
T PRK02135 175 SLGPKMLHA 183 (201)
T ss_pred EeCcHHHHH
Confidence 66555555
No 10
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=40.11 E-value=31 Score=22.87 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=15.2
Q ss_pred EEEEecCCeEEEEcCCC
Q 022175 155 VYVRTDKGVLFEVKPHV 171 (301)
Q Consensus 155 VYIhT~~gvlIeV~P~~ 171 (301)
||++|.+|.|+.+|..+
T Consensus 3 v~~~~~~g~l~AlD~~T 19 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKT 19 (38)
T ss_dssp EEEETTTSEEEEEETTT
T ss_pred EEEeCCCCEEEEEECCC
Confidence 99999999999998753
No 11
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B.
Probab=35.69 E-value=2.3e+02 Score=26.45 Aligned_cols=149 Identities=15% Similarity=0.056 Sum_probs=73.8
Q ss_pred CCCCC-CCCCCcHHHHHHHHhhcchhhhcCCccEEEEEec----CCeEEEEc-CCCCCCCChh-hHHHHHHHHHHhCc-c
Q 022175 122 NNKNP-ADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTD----KGVLFEVK-PHVRLPRTYK-RFAGIMLQLLQKLS-I 193 (301)
Q Consensus 122 l~~~~-~~gRPDIvHq~LL~lLDSPLNKaG~Lq~VYIhT~----~gvlIeV~-P~~RIPRtyk-RF~GLM~QLL~k~~-I 193 (301)
+++-+ ..||-||+=.||.+++=--=.-.--.. ||+.-. ..+.|.+. +.+|-=.--. .+.+++-..|.... .
T Consensus 19 L~dlpG~~GRlDiLcR~v~~AlflSh~~R~Dv~-v~lvL~g~pdp~~tI~f~g~~lr~l~pDErs~a~li~kAL~~~~~~ 97 (199)
T PF04013_consen 19 LNDLPGSAGRLDILCRCVNAALFLSHGIRRDVR-VYLVLLGPPDPPRTIRFEGSELRRLNPDERSIAALIKKALEKRGMI 97 (199)
T ss_dssp CCCTTTTTTSHHHHHHHHHHHHBESSSB-TTEE-EEEEEEESSSS-EEEEEETTT--S--SSHHHHHHHHHHHHCHCCTG
T ss_pred hhhCCCcchhHHHHHHHHHHHHHHhcCcccceE-EEEEEecCCCCCEEEEEeccccCCCCccHHHHHHHHHHHHhcCCCC
Confidence 34444 489999999999987643222222344 666654 45655554 4454422213 45667777887763 1
Q ss_pred cccc-cccceEEEEecccccccCC--C-CeEEEEeccCccccchhhHHhhhCCCCCeEEEEC---ccccCCCcCCCccee
Q 022175 194 TAVG-KREKLLRVIKNPVTQYLPV--N-SRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVC---SEVISAYIYGDLFFH 266 (301)
Q Consensus 194 ~a~~-~~e~LLkviknpLtd~Lp~--g-~~kI~LS~~~g~~v~l~e~v~~l~~~~~ivfvVG---afahGdf~~~d~~~~ 266 (301)
.... ...|=+.|-+..+.+++.. + ...+-|+ ++|..+ ++.- .+. .+.|||.| +|+..+..+=..+-.
T Consensus 98 ~~~~~e~~pGi~v~~~~fe~ll~~~~~~~~l~~L~-e~G~di--~~~~--~~~-~d~~FVLgDH~g~~~eee~~L~~~~a 171 (199)
T PF04013_consen 98 GEQWRESTPGIYVRKGGFEDLLEELAEEYPLYYLH-EDGEDI--RDVE--FPG-NDPVFVLGDHIGFTEEEEELLERLGA 171 (199)
T ss_dssp CCSEEEEETTEEEE---HHHHHHHHHCTSEEEEES-TTSEEG--GGS-----S--SEEEEEE-TT-SHHHHHHHHHCTTS
T ss_pred CceeeecCCCEEEecCCHHHHHHHHhcCCcEEEEc-CCCCcH--hhcc--cCC-CCCeEEEeCCCCCCHHHHHHHHHccC
Confidence 1100 1123388999999999964 2 4678899 667643 3321 111 16899998 333333322222223
Q ss_pred eee-ecccchhh
Q 022175 267 IYI-LSDINLYF 277 (301)
Q Consensus 267 ~~i-~S~~~l~~ 277 (301)
++| |+-.+|-|
T Consensus 172 ~kiSlGP~~lhA 183 (199)
T PF04013_consen 172 EKISLGPKSLHA 183 (199)
T ss_dssp EEEES-SS---H
T ss_pred ceEEeCCHHHHH
Confidence 444 55555544
No 12
>PF02202 Tachykinin: Tachykinin family; InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=26.04 E-value=9.3 Score=20.54 Aligned_cols=8 Identities=38% Similarity=0.725 Sum_probs=5.4
Q ss_pred hhhHHHHH
Q 022175 177 YKRFAGIM 184 (301)
Q Consensus 177 ykRF~GLM 184 (301)
-++|.|||
T Consensus 4 pd~F~GLM 11 (11)
T PF02202_consen 4 PDQFYGLM 11 (11)
T ss_dssp HHHHCCC-
T ss_pred cccceecC
Confidence 46888887
No 13
>PTZ00469 60S ribosomal subunit protein L18; Provisional
Probab=25.96 E-value=47 Score=30.74 Aligned_cols=112 Identities=11% Similarity=0.195 Sum_probs=68.2
Q ss_pred CCCCCChhhHHHHHHHHHHhCcccccccccceEEEEecccccccCCCCeEEEEeccCccccchhhHHhhhC-CCCCeEEE
Q 022175 171 VRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASIS-DDDNLVFV 249 (301)
Q Consensus 171 ~RIPRtykRF~GLM~QLL~k~~I~a~~~~e~LLkviknpLtd~Lp~g~~kI~LS~~~g~~v~l~e~v~~l~-~~~~ivfv 249 (301)
-.-|++=|-+..++++||....=+. +.++-++| +.. ..+|...-..|++..+...+. .+..++||
T Consensus 16 r~~~~stN~yL~~Lik~yk~larrt---~a~fwk~V---a~R--------L~~srrnr~pVnLSkI~r~~~~ke~~~~VV 81 (187)
T PTZ00469 16 RKNLVSKNPYLRLLVKLYRFLARRT---NANFNKII---AKR--------LIMPKRFRPPLSLSKLHRHMASYPDDVAVV 81 (187)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHhh---CChHHHHH---HHH--------HhcccccCCceeHHHHHHHhccCCCCEEEE
Confidence 3458999999999999999876552 22333332 112 222323334677777776662 24457788
Q ss_pred ECccccCCCcCCCcceeeeeecccchhh-----------hhhhhhhhhhhhhccceeEEEe
Q 022175 250 VCSEVISAYIYGDLFFHIYILSDINLYF-----------SCLSFHVRLVQWHMGKSIVIIQ 299 (301)
Q Consensus 250 VGafahGdf~~~d~~~~~~i~S~~~l~~-----------a~~~~~~~~~~~~~~~~~~~~~ 299 (301)
+|-. -||-...+ ++...+..+.+|. -|-.|++-...---|..++|+|
T Consensus 82 vGkV-l~dgrl~~--vpkvtVaAL~fS~~Ar~kI~~AGGe~lT~dqLa~~~P~G~nv~Ll~ 139 (187)
T PTZ00469 82 VGSI-TDDKRLYD--CKKLKVCALRFTETARKRILDAGGECLTFDQLALKYPTGQKCILLR 139 (187)
T ss_pred EeeE-ccCccccc--cCceEEEEEecCHHHHHHHHHhCCEEEeHHHHHHHCCCCCceEEEE
Confidence 8764 22222111 1333377888773 4777888777777888888887
No 14
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=25.13 E-value=1.3e+02 Score=29.06 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=52.7
Q ss_pred CChhhHHHHHHHHHH---hCcccccccccceEEEEecc----cccccCCCCeEEEEeccCccccchhhHHhhhCCCCCeE
Q 022175 175 RTYKRFAGIMLQLLQ---KLSITAVGKREKLLRVIKNP----VTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLV 247 (301)
Q Consensus 175 RtykRF~GLM~QLL~---k~~I~a~~~~e~LLkviknp----Ltd~Lp~g~~kI~LS~~~g~~v~l~e~v~~l~~~~~iv 247 (301)
+.|.||..+|.+=.. +|-..+ +-.+.|..=--.+ +-+.|++.++.| + |.. ++...+.-+..+...+
T Consensus 26 ~~Y~r~r~~MT~evnAaiega~~a-Ga~eVvVnDsHg~~~Nll~e~L~~~a~LI--~---G~p-rp~~Mm~Gld~~~D~v 98 (265)
T cd00281 26 PGYEAFREQMTEAVIAACEGSLAA-GATQVLVKDSHDSGRNLIPERLPEPVQLI--S---GSG-HPYCMVQGLDRSFDAL 98 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CCcEEEEEcCCCCccccChhHCCcCEEEE--e---cCC-CcchhhhccccCccEE
Confidence 469999999987332 233322 1233333321223 334444433333 3 432 4555555666667789
Q ss_pred EEEC----ccc-cCCCc------CCCcceeeeeecccchhh-hhhhh
Q 022175 248 FVVC----SEV-ISAYI------YGDLFFHIYILSDINLYF-SCLSF 282 (301)
Q Consensus 248 fvVG----afa-hGdf~------~~d~~~~~~i~S~~~l~~-a~~~~ 282 (301)
|+|| |-+ .|-.+ +.+.+++...+|.+.|.+ .|+-|
T Consensus 99 ~fiGYHa~ag~~~gvL~HT~~~~~~~v~iNG~~~gE~~lna~~Ag~~ 145 (265)
T cd00281 99 LFIGYHARAGTAANVMAHSYTTEVSQIRINGQAIAEFHLNALTAGYY 145 (265)
T ss_pred EEEecCCcccCCCCccccccccceEEEEECCEEcCHHHHHHHHHhhc
Confidence 9999 433 44322 223344455577777776 44433
No 15
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=22.69 E-value=34 Score=32.39 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=22.4
Q ss_pred CCCCcEEEEecCCccceeecCCeee--ecCchhhHHHHHhC
Q 022175 84 TKRPGVIFVLEKASLEVAKVGKSYQ--ILNSDDHSNFLRRN 122 (301)
Q Consensus 84 ~~~~~livVLe~A~LE~~K~gk~~~--LLn~d~H~~~mrkl 122 (301)
..|..=+|+=-+|.-+.-+.++.|. +|.++.|..||.|.
T Consensus 202 r~W~ddvvFkN~~~~~~~~~k~~fiND~~rSdfH~kFl~Ky 242 (244)
T PF04889_consen 202 RRWDDDVVFKNQARGEPDKKKKEFINDTLRSDFHKKFLNKY 242 (244)
T ss_pred cCCccccccccccCCCCCCCCCCcccCCcccHHHHHHHHHh
Confidence 4555544443333322222222464 99999999999984
No 16
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=22.64 E-value=78 Score=27.48 Aligned_cols=39 Identities=21% Similarity=0.490 Sum_probs=31.6
Q ss_pred cCCccEEEEEecCCeEEEEcCCCCCCCChhhHHHHHHHHHHh
Q 022175 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQK 190 (301)
Q Consensus 149 aG~Lq~VYIhT~~gvlIeV~P~~RIPRtykRF~GLM~QLL~k 190 (301)
.+.+. |=|++.|++-.+|+ +|+||.|.-|..-+-+++.+
T Consensus 16 ~~~~~-vEikSvN~R~Ldi~--~rlP~~l~~lE~~ir~~i~~ 54 (159)
T PF03755_consen 16 GGSIS-VEIKSVNHRFLDIS--IRLPRELSSLEPEIRKLIRK 54 (159)
T ss_pred CeEEE-EEEEecccCceeeE--EeCCHHHHHHHHHHHHHHHH
Confidence 46777 99999999988875 89999999887766666655
No 17
>PTZ00195 60S ribosomal protein L18; Provisional
Probab=22.39 E-value=55 Score=30.56 Aligned_cols=108 Identities=12% Similarity=0.217 Sum_probs=67.8
Q ss_pred CCCCChhhHHHHHHHHHHhCcccccccccceEEEEecccccccCCCCeEEEEeccCccccchhhHHhhhCC---------
Q 022175 172 RLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISD--------- 242 (301)
Q Consensus 172 RIPRtykRF~GLM~QLL~k~~I~a~~~~e~LLkviknpLtd~Lp~g~~kI~LS~~~g~~v~l~e~v~~l~~--------- 242 (301)
.-|++=|-+..|++.||..+.=+. +.++-++| +..+. +|...-..|+++.+...+.+
T Consensus 17 ~~pkstN~yL~lLVklyrflaRrt---~a~fnk~V---akRL~--------~sr~nRppVsLSrI~r~~k~~d~~~~~~~ 82 (198)
T PTZ00195 17 HHTYSTNPYIKLLIKLYKFLAKRT---SSGFNKVV---YQRLI--------KSRSNRAPISLSRIAVVMKRKAVFTAKGK 82 (198)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhh---CCHHHHHH---HHHHh--------cccccCCceeHHHHHHHHhccccccccCC
Confidence 348899999999999999876552 22333333 22222 23223345666666655431
Q ss_pred CCCeEEEECccccCCCcCCCcceee--ee-ecccchhh-----------hhhhhhhhhhhhhccceeEEEe
Q 022175 243 DDNLVFVVCSEVISAYIYGDLFFHI--YI-LSDINLYF-----------SCLSFHVRLVQWHMGKSIVIIQ 299 (301)
Q Consensus 243 ~~~ivfvVGafahGdf~~~d~~~~~--~i-~S~~~l~~-----------a~~~~~~~~~~~~~~~~~~~~~ 299 (301)
...++||||.. .+|.-+.+ +. +-.+.+|. -|-.|++-...---|..++|+|
T Consensus 83 ~~k~~VVvGkV------tdd~rl~~vPkvtVaALrfS~tAr~rI~kAGGe~lT~dQLa~~~PkG~ntvLlr 147 (198)
T PTZ00195 83 KAPIAVVVGDV------LDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLR 147 (198)
T ss_pred CCcEEEEEeeE------cCCccccccCceEEEEEecCHHHHHHHHHhCCEEEeHHHHHHHCCCCCCeEEEE
Confidence 23478888865 33444555 33 77777772 4777888777777888888887
No 18
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=21.87 E-value=1e+02 Score=20.29 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=17.9
Q ss_pred hcchhhhcCCccEEEEEecCCeEEEEcCCC
Q 022175 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHV 171 (301)
Q Consensus 142 LDSPLNKaG~Lq~VYIhT~~gvlIeV~P~~ 171 (301)
..||.--.| . ||+-|.+|.|+.+++.+
T Consensus 14 ~~~~~v~~g--~-vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 14 WSSPAVAGG--R-VYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -S--EECTS--E-EEEE-TTSEEEEEETT-
T ss_pred CcCCEEECC--E-EEEEcCCCEEEEEeCCC
Confidence 356655555 4 99999999999999863
Done!