Query 022175
Match_columns 301
No_of_seqs 148 out of 243
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:09:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oii_A Essential for mitotic g 100.0 5.3E-77 1.8E-81 548.2 18.0 203 84-288 37-248 (253)
2 3bbd_A Ribosome biogenesis pro 100.0 5.4E-70 1.9E-74 489.1 11.4 183 89-286 3-203 (205)
3 3o7b_A Ribosome biogenesis NEP 100.0 3E-67 1E-71 481.4 9.8 191 84-289 23-238 (244)
4 2qmm_A UPF0217 protein AF_1056 99.9 6.2E-23 2.1E-27 183.1 3.2 132 128-277 27-181 (197)
5 3aia_A UPF0217 protein MJ1640; 99.8 4.3E-21 1.5E-25 173.0 5.9 134 127-277 31-192 (211)
6 4fak_A Ribosomal RNA large sub 91.7 0.081 2.8E-06 45.8 2.5 61 211-276 68-137 (163)
7 1o6d_A Hypothetical UPF0247 pr 88.9 0.27 9.1E-06 42.6 3.4 65 210-276 58-127 (163)
8 1to0_A Hypothetical UPF0247 pr 85.6 0.65 2.2E-05 40.2 3.9 43 213-257 66-113 (167)
9 1ns5_A Hypothetical protein YB 83.0 0.43 1.5E-05 40.8 1.6 42 213-257 63-108 (155)
10 2qwv_A UPF0217 protein VC_A105 45.5 1E+02 0.0036 27.6 8.9 144 126-277 30-190 (208)
11 2kw3_C Regulatory factor X-ass 43.7 15 0.00051 27.3 2.6 20 126-145 9-32 (62)
12 2ejy_A 55 kDa erythrocyte memb 22.3 92 0.0032 23.6 4.0 37 143-185 46-82 (97)
13 2q9v_A Membrane-associated gua 22.1 1.7E+02 0.0057 20.7 5.2 39 142-186 36-74 (90)
14 3e17_A Tight junction protein 20.6 84 0.0029 22.8 3.3 38 142-185 30-67 (88)
15 3o46_A Maguk P55 subfamily mem 20.3 87 0.003 22.6 3.4 37 142-184 37-73 (93)
No 1
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Probab=100.00 E-value=5.3e-77 Score=548.16 Aligned_cols=203 Identities=41% Similarity=0.724 Sum_probs=191.5
Q ss_pred CCCCcEEEEecCCccceeec------CCeeeecCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEE
Q 022175 84 TKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYV 157 (301)
Q Consensus 84 ~~~~~livVLe~A~LE~~K~------gk~~~LLn~d~H~~~mrkl~~~~~~gRPDIvHq~LL~lLDSPLNKaG~Lq~VYI 157 (301)
+.++||||||++|+||+++. +++|+|||+|+|+++|+++++++++|||||||||||+||||||||+|+|| |||
T Consensus 37 ~~~~rlivVL~~a~LE~v~~~~~~r~~~~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~lldSpLNk~G~L~-VYI 115 (253)
T 3oii_A 37 KITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQ-VYI 115 (253)
T ss_dssp CSSCCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHTTCEE-EEE
T ss_pred cCCceEEEEeCCCccceeeccccccCCCCeEeechHHHHHHHHHcCCchhhcCCCHHHHHHHHHhcChhhhcCceE-EEE
Confidence 57899999999999999995 57899999999999999999999999999999999999999999999999 999
Q ss_pred EecCCeEEEEcCCCCCCCChhhHHHHHHHHHHhCcccccccccceEEEEecccccccCCCCeEEEEeccCccccchhhHH
Q 022175 158 RTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYV 237 (301)
Q Consensus 158 hT~~gvlIeV~P~~RIPRtykRF~GLM~QLL~k~~I~a~~~~e~LLkviknpLtd~Lp~g~~kI~LS~~~g~~v~l~e~v 237 (301)
||.+|+||+|||++||||||+||+|||+|||++++|++.+++++||++++|||++|||+|+++|+||++ |+.+++.+|+
T Consensus 116 hT~~~~lIeV~P~~RiPRty~rF~GLM~qLL~k~~I~~~~~~~~LLkvikn~l~d~Lp~~~~kI~ls~~-g~~v~~~~~~ 194 (253)
T 3oii_A 116 QTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFD-APVIRVQDYI 194 (253)
T ss_dssp EETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEETTEEEEEEEEECSCGGGTSCSSEEEEEECTT-SCBCCHHHHH
T ss_pred EecCCEEEEECCCCCCCCCHHHHHHHHHHHHhcCcccCCCCCCeeEEEEcCCHHHhCCCCCeEEEEccC-CCccCHHHHH
Confidence 999999999999999999999999999999999999998788999999999999999999999999965 7799999999
Q ss_pred hhhCCCCCeEEEECccccCCCcCCCcceeeee-ecccchhh--hhhhhhhhhhh
Q 022175 238 ASISDDDNLVFVVCSEVISAYIYGDLFFHIYI-LSDINLYF--SCLSFHVRLVQ 288 (301)
Q Consensus 238 ~~l~~~~~ivfvVGafahGdf~~~d~~~~~~i-~S~~~l~~--a~~~~~~~~~~ 288 (301)
+.+.++.++||||||||||+++|+++++++++ ||+|+||| +|+++|.++..
T Consensus 195 ~~l~~~~~i~vvVGafahG~~~f~~~~~~e~iSIs~ypLsa~~~c~kic~a~E~ 248 (253)
T 3oii_A 195 EKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAED 248 (253)
T ss_dssp HTSCTTCEEEEEEECSSSCCSCTTTTTCSEEEBSCSSCCCHHHHHHHHHHHHHH
T ss_pred HhcccCCCeEEEEeeeCCCCCcccchhcceeEEEeCCChhHHHHHHHHHHHHHH
Confidence 99988889999999999999889888999888 99999998 99999988753
No 2
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A*
Probab=100.00 E-value=5.4e-70 Score=489.14 Aligned_cols=183 Identities=25% Similarity=0.409 Sum_probs=170.8
Q ss_pred EEEEecCCcccee--------ecCC--eeeecCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEE
Q 022175 89 VIFVLEKASLEVA--------KVGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVR 158 (301)
Q Consensus 89 livVLe~A~LE~~--------K~gk--~~~LLn~d~H~~~mrkl~~~~~~gRPDIvHq~LL~lLDSPLNKaG~Lq~VYIh 158 (301)
+||||++|+||++ |+|| +|+|||+|+|+++|+++++++++|||||||||||+||||||||+|+|| ||||
T Consensus 3 l~vvL~~a~LE~vP~ei~~a~k~gk~p~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~llDSpLNk~G~L~-VYIh 81 (205)
T 3bbd_A 3 YNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLN-IYIH 81 (205)
T ss_dssp EEEEEEEESCCBCCGGGGGGCCCBTTBCCSBCCHHHHTTTTTTCTTGGGSSCHHHHHHHHHHHHTSHHHHTTCEE-EEEE
T ss_pred EEEEECCCccccChhhhhhhHhcCCCCcceecchHHHHHHHHhcccchhccCCcHHHHHHHHHhcChHHHCCCeE-EEEE
Confidence 7999999999999 9999 999999999999999999999999999999999999999999999999 9999
Q ss_pred ecCCeEEEEcCCCCCCCChhhHHHHHHHHHHhCcccccccccceEEEEecccccccCCC--CeEEEEeccCccccchhhH
Q 022175 159 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVN--SRKIGFSYSSEKLVKMRNY 236 (301)
Q Consensus 159 T~~gvlIeV~P~~RIPRtykRF~GLM~QLL~k~~I~a~~~~e~LLkviknpLtd~Lp~g--~~kI~LS~~~g~~v~l~e~ 236 (301)
|.+|+||+|||++||||||+||+|||+|||++++ ++||++++|||++|||+| +++|+||+ +|+.+++.+|
T Consensus 82 T~~~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~-------~~Llkvik~~l~~~lp~~~~~~~i~ls~-~g~~v~~~~~ 153 (205)
T 3bbd_A 82 TYDDKVLKINPETRLPRNYFRFLGVMEKVLKGER-------NHLIKMEEKTLEDLLNEINAKKIAIMTK-TGKLTHPKLL 153 (205)
T ss_dssp ETTSEEEEECTTCCCCSSHHHHHHHHHHHHTTCC-------CSSEEEEECCHHHHHHHTTCCEEEEEEE-EEEECCGGGG
T ss_pred ecCCEEEEECCCCCCCCCHHHHHHHHHHHHHhCc-------hhheEEEcCCHHHhcCCCCCceEEEEcC-CCcccCHHHH
Confidence 9999999999999999999999999999999997 689999999999999998 89999995 5889999999
Q ss_pred HhhhCCCCCeEEEECccccCCCcCC-Ccceeee--e-ecccchhh--hhhhhhhhh
Q 022175 237 VASISDDDNLVFVVCSEVISAYIYG-DLFFHIY--I-LSDINLYF--SCLSFHVRL 286 (301)
Q Consensus 237 v~~l~~~~~ivfvVGafahGdf~~~-d~~~~~~--i-~S~~~l~~--a~~~~~~~~ 286 (301)
+ . +. ||+|||||||+|+.. ..++++. + ||+|+||| .|+++|.++
T Consensus 154 ~-~---~~--~~~IGaf~~G~~~~~~~~~~~~~~~isIs~~pLsa~~v~~ri~~~~ 203 (205)
T 3bbd_A 154 K-E---YD--TFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIICYSL 203 (205)
T ss_dssp G-G---CS--EEEEECSSSSCCCCCGGGCSSEEEEEESSSSCCCHHHHHHHHHHHH
T ss_pred h-C---CC--EEEEccccCCCcchhhhhhhccccEEEEeCCChhHHHHHHHHHHHh
Confidence 8 2 22 999999999999866 2366666 5 99999998 999999765
No 3
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus}
Probab=100.00 E-value=3e-67 Score=481.41 Aligned_cols=191 Identities=24% Similarity=0.302 Sum_probs=171.7
Q ss_pred CCCCcEEEEecCCccceee---------------cCC--eeeecCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchh
Q 022175 84 TKRPGVIFVLEKASLEVAK---------------VGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRL 146 (301)
Q Consensus 84 ~~~~~livVLe~A~LE~~K---------------~gk--~~~LLn~d~H~~~mrkl~~~~~~gRPDIvHq~LL~lLDSPL 146 (301)
-.++|++|||++|+||+++ +|| +|+|||+++|+++|++++++++||||||||||||++|||||
T Consensus 23 ~~~~~l~vVL~ea~LElvp~ei~~hp~v~~~a~rrgk~p~~~LLd~~~H~~amkkl~~~~krgRPDIvHq~LL~llDSpL 102 (244)
T 3o7b_A 23 FQGMGSAFVFLEASLELIPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPL 102 (244)
T ss_dssp ---CCEEEEEEEESCCBCCGGGTTSHHHHHHHHHHTSCGGGSBCCHHHHGGGCTTCTTGGGCSCHHHHHHHHHHHHTCSC
T ss_pred ecCcEEEEEECCCcccccchhhccCcchhhhhhhcCCCccccccchHHHHHHHHHCCChhhccCccHHHHHHHHHhhChh
Confidence 4688999999999999995 466 59999999999999999999999999999999999999999
Q ss_pred hhcCCccEEEEEecCCeEEEEcCCCCCCCChhhHHHHHHHHHHhCcccccccccceEEEEecccccccCCCCeEEEEecc
Q 022175 147 TKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYS 226 (301)
Q Consensus 147 NKaG~Lq~VYIhT~~gvlIeV~P~~RIPRtykRF~GLM~QLL~k~~I~a~~~~e~LLkviknpLtd~Lp~g~~kI~LS~~ 226 (301)
|| || |||||.+|+||+|||++||||||+||+|||+|||++++|++ ++++||++++|||++|||++ ++|+||+
T Consensus 103 Nk---L~-VYIHT~~~~lI~V~P~~RiPRty~RF~GLM~qLL~k~~I~~--~~~~LLkvik~~l~~~lp~~-~~I~lS~- 174 (244)
T 3o7b_A 103 RD---FE-VYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITA--GDTTLIEFKDVGLRDIVRGR-DVLLFRE- 174 (244)
T ss_dssp CS---EE-EEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEE--TTEEEEEEESSCHHHHTTTS-EEEEEEE-
T ss_pred hh---eE-EEEEecCCEEEEECCCCCCCCCHHHHHHHHHHHHhhCcCCC--CCCeeEEEEcCCHHHhcCCC-cEEEEcc-
Confidence 98 99 99999999999999999999999999999999999999999 56899999999999999999 9999995
Q ss_pred CccccchhhHHhhhCCCCCeEEEECccccCCCcCCCcce-----ee-eeecccchhh--hhhhhhhhhhhh
Q 022175 227 SEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDLFF-----HI-YILSDINLYF--SCLSFHVRLVQW 289 (301)
Q Consensus 227 ~g~~v~l~e~v~~l~~~~~ivfvVGafahGdf~~~d~~~-----~~-~i~S~~~l~~--a~~~~~~~~~~~ 289 (301)
+|+.+++.+|++.+. ||+|||||||+|+ +.+. ++ +.||+|+|+| +|+++|.+.-..
T Consensus 175 ~G~~v~~~~~~~~~~-----~~vIGafphGdf~--~~~~~~~~~~~~iSIs~~pLsa~~v~~ri~~a~E~~ 238 (244)
T 3o7b_A 175 KGGRFEFSELLDGDV-----AVCIGAFPHGDFF--EETLRELGEFKEVSLGTESYTSLYVTSRVLCEYERV 238 (244)
T ss_dssp EEECCCHHHHTSSSE-----EEEEECSSSSCCC--HHHHHHHCSEEEECCCSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHhhcCC-----EEEECcccCCCcc--HhhhhhccCccEEEEeCCChHHHHHHHHHHHHHHHh
Confidence 588999999986653 9999999999975 3333 33 4499999998 899999877543
No 4
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=99.86 E-value=6.2e-23 Score=183.14 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=111.1
Q ss_pred CCCCcHHHHHHHHhhcchhhhcCCccEEEEEecC------------CeEEEEcCCCCCCCChhhHHHHHHHHHHh--Ccc
Q 022175 128 DYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDK------------GVLFEVKPHVRLPRTYKRFAGIMLQLLQK--LSI 193 (301)
Q Consensus 128 ~gRPDIvHq~LL~lLDSPLNKaG~Lq~VYIhT~~------------gvlIeV~P~~RIPRtykRF~GLM~QLL~k--~~I 193 (301)
+|||||+|+||+++|.|++|..|.++ |||||.+ +.|++|+|+.| ||.|||+|+|.+ +++
T Consensus 27 ~GR~DIl~r~l~~al~~s~~~R~dv~-vyl~l~~~p~p~~ti~f~g~~v~~v~PdeR------~~~gli~kaL~~~~~~~ 99 (197)
T 2qmm_A 27 AGRMDVLCRCTSQALFISHGIRRDVE-VYLLLLGPPSPPKSILIKGDEVRRMSPDER------NVAGHIKKALAVECGKS 99 (197)
T ss_dssp TTSHHHHHHHHHHHHEETTEECTTEE-EEEEECCSSSCCEEEEEETTTCCSCCSSHH------HHHHHHHHHHHSCCCSS
T ss_pred CCCceeHHHHHHHHHhhhhcccCCeE-EEEEECCCCCCCeeEEecCCeEEEcChhHH------HHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999 9999999 99999999999 999999999999 888
Q ss_pred cccccccceEEEEecccccccCC-C--CeEEEEeccCccccchhhHHhhhCCCCCeEEEECccccCCCcCCCc-----ce
Q 022175 194 TAVGKREKLLRVIKNPVTQYLPV-N--SRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDL-----FF 265 (301)
Q Consensus 194 ~a~~~~e~LLkviknpLtd~Lp~-g--~~kI~LS~~~g~~v~l~e~v~~l~~~~~ivfvVGafahGdf~~~d~-----~~ 265 (301)
++. +++++++.+.+++++|.. + .++|.|+ ++|+.+...++ ..++||++|+ ||+|+..++ .-
T Consensus 100 ~~~--~~pgi~v~~~sle~ll~e~~~~~~v~~L~-E~G~~i~~~~~------~~~~~fvlGd--H~~f~~e~~~~l~~~~ 168 (197)
T 2qmm_A 100 WKK--VHSGVYVSRKGLEELIEELSEKYSIIYLK-EDGVDISNAQL------PPNPLFVIGD--HEGLTEEQEKVVERYA 168 (197)
T ss_dssp CEE--EETTEEEECCCHHHHHHHHHHHSEEEEEE-EEEEEGGGSCC------CSSEEEEEEC--TTCCCHHHHHHHHTTC
T ss_pred cCC--CCCCEEEECCCHHHHHHHhhcCCcEEEEc-CCCCCCchhhc------CCCCEEEEeC--CCCCCHHHHHHHHHhc
Confidence 764 579999999999999965 2 3689999 77887776665 2468999999 999985431 22
Q ss_pred ee-eeecccchhh
Q 022175 266 HI-YILSDINLYF 277 (301)
Q Consensus 266 ~~-~i~S~~~l~~ 277 (301)
++ |+|...+|-|
T Consensus 169 ~~~iSigp~~L~A 181 (197)
T 2qmm_A 169 ALKLSLSPLSLLA 181 (197)
T ss_dssp SEEEECCSSCCCH
T ss_pred CeEEEECCchhHH
Confidence 23 3366666655
No 5
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=99.82 E-value=4.3e-21 Score=172.97 Aligned_cols=134 Identities=14% Similarity=0.037 Sum_probs=110.8
Q ss_pred CCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCC----eEEE--------EcCCCCCCCChhhHHHHHHHHHHhCc--
Q 022175 127 ADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKG----VLFE--------VKPHVRLPRTYKRFAGIMLQLLQKLS-- 192 (301)
Q Consensus 127 ~~gRPDIvHq~LL~lLDSPLNKaG~Lq~VYIhT~~g----vlIe--------V~P~~RIPRtykRF~GLM~QLL~k~~-- 192 (301)
.+|||||+|+||+++|.|++|..|.++ ||+||.++ ++|+ |+|+.| ||.|||+|+|.+++
T Consensus 31 ~~GR~DIl~r~l~~Al~~s~~~R~dv~-vyl~l~~~p~p~~~I~f~g~~lr~v~PdeR------s~~~li~kaL~~~~~~ 103 (211)
T 3aia_A 31 SCGRLDLLCRCVSDAFFLSHDIRRDVV-FYAVLYGQPNPPVCIKFVGSELKKVSPDER------NIAIFIKKALKKFEEL 103 (211)
T ss_dssp TTTSHHHHHHHHHHHHBCSSSBCTTEE-EEEEECCSSSCCEEEEEETTTCCSCCSSHH------HHHHHHHHHHHHHHHS
T ss_pred CCCCeehHHHHHHHHHhhhhcccCCeE-EEEEECCCCCCceEEEEcCccccccChhHH------HHHHHHHHHHHhcccc
Confidence 689999999999999999999999999 99999999 9999 999999 99999999999976
Q ss_pred ---ccccc-cccceEEEEecccccccCC----CCeEEEEeccCccccchhhHHhhhCCCCCeEEEECccccCCCcCCCc-
Q 022175 193 ---ITAVG-KREKLLRVIKNPVTQYLPV----NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVCSEVISAYIYGDL- 263 (301)
Q Consensus 193 ---I~a~~-~~e~LLkviknpLtd~Lp~----g~~kI~LS~~~g~~v~l~e~v~~l~~~~~ivfvVGafahGdf~~~d~- 263 (301)
+++.. +.+|++++.+.++.++|.. +.++|.|+ ++|+.+...++ .++||++|+ ||+|+..+.
T Consensus 104 ~~~~~~~~~~~~pgi~v~~~sle~ll~e~~~~~~~v~~L~-E~G~~i~~~~~-------~~~~fvlGd--H~~f~~e~~~ 173 (211)
T 3aia_A 104 DEEQRKDWNQSTPGIYVRRLGFRNLVLEKLEEGKNIYYLH-MNGEDVENVDI-------ENPVFIIGD--HIGIGEEDER 173 (211)
T ss_dssp CTTGGGSCEEEETTEEEECCCHHHHHHHHHHTTCEEEEEE-EEEEEGGGCCC-------CSEEEEEEC--SSCSCHHHHH
T ss_pred cccCCcccccCCCCeEEEcCCHHHHHHHHhhcCCcEEEEc-CCCCCCccccc-------CCcEEEEEC--CCCCCHHHHH
Confidence 76511 2469999999999999965 33689999 67887776665 468999999 999985532
Q ss_pred ----ceee-eeecccchhh
Q 022175 264 ----FFHI-YILSDINLYF 277 (301)
Q Consensus 264 ----~~~~-~i~S~~~l~~ 277 (301)
.-.+ ++|+..+|-|
T Consensus 174 ~L~~~~~~~iSigp~~L~A 192 (211)
T 3aia_A 174 FLDEIKAKRISLSPLELHA 192 (211)
T ss_dssp HHHHTTCEEEECCSSCCCH
T ss_pred HHHhhCCeEEEECCcchHH
Confidence 2223 3366666655
No 6
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=91.72 E-value=0.081 Score=45.79 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=42.2
Q ss_pred ccccCCCCeEEEEeccCccccchhhHHhhhCC-----CCCeEEEECccccCCCcCCCcce---eeee-ecccchh
Q 022175 211 TQYLPVNSRKIGFSYSSEKLVKMRNYVASISD-----DDNLVFVVCSEVISAYIYGDLFF---HIYI-LSDINLY 276 (301)
Q Consensus 211 td~Lp~g~~kI~LS~~~g~~v~l~e~v~~l~~-----~~~ivfvVGafahGdf~~~d~~~---~~~i-~S~~~l~ 276 (301)
-..+|+++.+|+|+ ..|+..+-.+|.+.+.. ...++|+||| |.|-- +++. |..+ +|...|+
T Consensus 68 l~~i~~~~~vI~LD-~~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG-~~Gl~---~~v~~rA~~~lSlS~mTfp 137 (163)
T 4fak_A 68 LAKIKPQSTVITLE-IQGKMLSSEGLAQELNQRMTQGQSDFVFVIGG-SNGLH---KDVLQRSNYALSFSKMTFP 137 (163)
T ss_dssp HHTCCTTSEEEEEE-EEEEECCHHHHHHHHHHHHHTTCCEEEEEECB-TTBCC---HHHHHHCSEEEESCSSCCC
T ss_pred HHhCCCCCEEEEEc-CCCCcCCHHHHHHHHHHHHhcCCcceEEEEEC-CCccC---HHHHHhcCceEEEecCCCC
Confidence 34567788999999 67999998998877642 3579999998 77743 2211 2333 6666655
No 7
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=88.90 E-value=0.27 Score=42.58 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=41.5
Q ss_pred cccccCCCCeEEEEeccCccccchhhHHhhhCC----CCCeEEEECccccCCCcCCCcceeeee-ecccchh
Q 022175 210 VTQYLPVNSRKIGFSYSSEKLVKMRNYVASISD----DDNLVFVVCSEVISAYIYGDLFFHIYI-LSDINLY 276 (301)
Q Consensus 210 Ltd~Lp~g~~kI~LS~~~g~~v~l~e~v~~l~~----~~~ivfvVGafahGdf~~~d~~~~~~i-~S~~~l~ 276 (301)
+...+|++..+|+|+ +.|+..+-.+|.+.+.+ ...++|+||| |.|-...--.--|..+ +|...|.
T Consensus 58 il~~i~~~~~vI~LD-~~Gk~~sS~~fA~~l~~~~~~G~~i~FvIGG-a~Gl~~~v~~rAd~~lSlS~mTfp 127 (163)
T 1o6d_A 58 LTNRILPGSFVMVMD-KRGEEVSSEEFADFLKDLEMKGKDITILIGG-PYGLNEEIFAKAHRVFSLSKMTFT 127 (163)
T ss_dssp HHTTCCTTCEEEEEE-EEEEECCHHHHHHHHHHHHHHTCCEEEEECC-TTCCCGGGGGGCSEEEECCSSCCC
T ss_pred HHHhcCCCCEEEEEc-CCCCcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCCCHHHHHhhCceEEccCCCCc
Confidence 344556666689999 67999999999877642 3579999998 6664320000122333 6766665
No 8
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=85.58 E-value=0.65 Score=40.23 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=32.5
Q ss_pred ccCCCCeEEEEeccCccccchhhHHhhhCC----C-CCeEEEECccccCC
Q 022175 213 YLPVNSRKIGFSYSSEKLVKMRNYVASISD----D-DNLVFVVCSEVISA 257 (301)
Q Consensus 213 ~Lp~g~~kI~LS~~~g~~v~l~e~v~~l~~----~-~~ivfvVGafahGd 257 (301)
.+|++..+|+|+ +.|+..+-.+|.+.+.+ . ..++|+||| |.|-
T Consensus 66 ~i~~~~~vI~LD-~~Gk~~sS~~fA~~l~~~~~~G~~~i~FvIGG-a~Gl 113 (167)
T 1to0_A 66 KISPDAHVIALA-IEGKMKTSEELADTIDKLATYGKSKVTFVIGG-SLGL 113 (167)
T ss_dssp TSCTTSEEEEEE-EEEEECCHHHHHHHHHHHHTTTCCEEEEEECC-SSCC
T ss_pred hcCCCCEEEEEc-CCCCcCCHHHHHHHHHHHHhcCCceEEEEEEC-CCCC
Confidence 455566789999 67999999999877642 2 569999998 6664
No 9
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=83.02 E-value=0.43 Score=40.83 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=32.0
Q ss_pred ccCCCCeEEEEeccCccccchhhHHhhhCC----CCCeEEEECccccCC
Q 022175 213 YLPVNSRKIGFSYSSEKLVKMRNYVASISD----DDNLVFVVCSEVISA 257 (301)
Q Consensus 213 ~Lp~g~~kI~LS~~~g~~v~l~e~v~~l~~----~~~ivfvVGafahGd 257 (301)
.+|++ .+|+|+ +.|+..+-.+|.+.+.+ ...++|+||| |.|-
T Consensus 63 ~i~~~-~vi~Ld-~~Gk~~sS~~fA~~l~~~~~~g~~i~FvIGG-~~Gl 108 (155)
T 1ns5_A 63 AAGKN-RIVTLD-IPGKPWDTPQLAAELERWKLDGRDVSLLIGG-PEGL 108 (155)
T ss_dssp HHTTS-EEEEEE-EEEECCCHHHHHHHHHHHHHHCSCEEEEECB-TTBC
T ss_pred hcCCC-cEEEEc-CCCCcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCC
Confidence 44555 689999 67999999999877642 3579999998 6664
No 10
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=45.46 E-value=1e+02 Score=27.58 Aligned_cols=144 Identities=10% Similarity=0.017 Sum_probs=79.9
Q ss_pred CCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCC----eEEEEc-CCCCC-C-CChhhHHHHHHHHHHhCcccccc-
Q 022175 126 PADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKG----VLFEVK-PHVRL-P-RTYKRFAGIMLQLLQKLSITAVG- 197 (301)
Q Consensus 126 ~~~gRPDIvHq~LL~lLDSPLNKaG~Lq~VYIhT~~g----vlIeV~-P~~RI-P-RtykRF~GLM~QLL~k~~I~a~~- 197 (301)
...||.||+=.|+.++|=---.-..-.. ||+.-.++ +.|.+. +.+|- - -.-....+++..-|.++.....+
T Consensus 30 G~~GR~DvLcR~v~sAlflSh~iR~Dv~-v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~~~~~~ 108 (208)
T 2qwv_A 30 GGKCHTEILAHCMMNSLFTAQSHREDVV-IHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQ 108 (208)
T ss_dssp TSSSCTHHHHHHHHHHHBCSSSBCSSEE-EEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTC
T ss_pred CccCceehHHHHHHHHHHHhccccCCeE-EEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhcccccccc
Confidence 4579999999999977622112223346 78776554 455543 34433 1 23457888988888885443211
Q ss_pred --cccceEEEEecccccccCC---CCeEEEEeccCccccchhhHHhhhCCCCCeEEEEC---ccccCCCcCCCcceeeee
Q 022175 198 --KREKLLRVIKNPVTQYLPV---NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVC---SEVISAYIYGDLFFHIYI 269 (301)
Q Consensus 198 --~~e~LLkviknpLtd~Lp~---g~~kI~LS~~~g~~v~l~e~v~~l~~~~~ivfvVG---afahGdf~~~d~~~~~~i 269 (301)
...|=+.|-+..+.++|.. ....+-|+ ++|+.+ +++- ++ .+.|||.| +|+..+..+=+..-.++|
T Consensus 109 ~~~~~pGi~v~~~~fe~ll~e~~~~~~ly~L~-e~G~di--~~~~--~~--~~~~FvLgDH~g~~~eee~~L~~~~~~~i 181 (208)
T 2qwv_A 109 TRVVQPGLTVRTISFEALLGELAEHHSLYMMD-KKGDSI--RDIK--IG--PNPCFILTDHIPMPKKSGNSMKRLGVEKI 181 (208)
T ss_dssp EEEEETTEEEECCCHHHHHHHHHTTSEEEEEE-EEEEET--TTSC--CC--SSEEEEECC----------CTTTTTCEEE
T ss_pred ccccCCCEEEecCCHHHHHHHHHhcCcEEEEe-CCCcCH--hhcc--CC--CCCEEEEcCCCCCCHHHHHHHHhcCCeEE
Confidence 1222367778888888854 23588899 667643 2321 12 56899999 344444433333334555
Q ss_pred -ecccchhh
Q 022175 270 -LSDINLYF 277 (301)
Q Consensus 270 -~S~~~l~~ 277 (301)
|.-.+|-|
T Consensus 182 SlGP~~l~A 190 (208)
T 2qwv_A 182 SLGPKMLFA 190 (208)
T ss_dssp ECCSSCCCH
T ss_pred EeCchHHHH
Confidence 66666544
No 11
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=43.72 E-value=15 Score=27.33 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHH----HHhhcch
Q 022175 126 PADYRPDIVHQAL----LSILDSR 145 (301)
Q Consensus 126 ~~~gRPDIvHq~L----L~lLDSP 145 (301)
.+..||||+|+.| ++||-||
T Consensus 9 d~~~rp~l~eqVLNqKk~SLLRsP 32 (62)
T 2kw3_C 9 DRPARPTLLEQVLNQKRLSLLRSP 32 (62)
T ss_dssp CCSCCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCCCccHHHHHHHHHHHHHhcCH
Confidence 3568999999988 7788887
No 12
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=22.31 E-value=92 Score=23.56 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=28.6
Q ss_pred cchhhhcCCccEEEEEecCCeEEEEcCCCCCCCChhhHHHHHH
Q 022175 143 DSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIML 185 (301)
Q Consensus 143 DSPLNKaG~Lq~VYIhT~~gvlIeV~P~~RIPRtykRF~GLM~ 185 (301)
+||..++|+|+ ..+++++||-.----.|+..|..++.
T Consensus 46 gspA~~aG~L~------~GD~Il~ING~~v~~~~~~~~~~~l~ 82 (97)
T 2ejy_A 46 GGMIHRQGSLH------VGDEILEINGTNVTNHSVDQLQKAMK 82 (97)
T ss_dssp SSHHHHHTCCC------TTCEEEEETTBCCCSSCSHHHHHHHH
T ss_pred CCHHHHcCCCC------CCCEEEEECCEECCCCCHHHHHHHHH
Confidence 69999999999 99999999964322236787776665
No 13
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=22.14 E-value=1.7e+02 Score=20.73 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=28.0
Q ss_pred hcchhhhcCCccEEEEEecCCeEEEEcCCCCCCCChhhHHHHHHH
Q 022175 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQ 186 (301)
Q Consensus 142 LDSPLNKaG~Lq~VYIhT~~gvlIeV~P~~RIPRtykRF~GLM~Q 186 (301)
-+||-.++|.|+ ..+++++||-.----.++..+..++.+
T Consensus 36 ~~spA~~aG~L~------~GD~I~~ing~~v~~~~~~~~~~~l~~ 74 (90)
T 2q9v_A 36 PLGAADTDGRLR------SGDELISVDGTPVIGKSHQLVVQLMQQ 74 (90)
T ss_dssp TTSHHHHHCCCC------TTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred CCChHHHCCCCC------CCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 369999999999 899999999653323456655555443
No 14
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=20.57 E-value=84 Score=22.75 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=28.8
Q ss_pred hcchhhhcCCccEEEEEecCCeEEEEcCCCCCCCChhhHHHHHH
Q 022175 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIML 185 (301)
Q Consensus 142 LDSPLNKaG~Lq~VYIhT~~gvlIeV~P~~RIPRtykRF~GLM~ 185 (301)
-+||..++|+|+ ..+++++||-.----.++..+..++.
T Consensus 30 ~gspA~~aG~L~------~GD~Il~ing~~v~~~~~~~~~~~i~ 67 (88)
T 3e17_A 30 RTGLATKDGNLH------EGDIILKINGTVTENMSLTDARKLIE 67 (88)
T ss_dssp TTSHHHHHCCCC------TTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred CCCHHHHcCCCC------CCCEEEEECCEECCCCCHHHHHHHHH
Confidence 368999999999 89999999976443457776665544
No 15
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=20.27 E-value=87 Score=22.58 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=28.2
Q ss_pred hcchhhhcCCccEEEEEecCCeEEEEcCCCCCCCChhhHHHHH
Q 022175 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIM 184 (301)
Q Consensus 142 LDSPLNKaG~Lq~VYIhT~~gvlIeV~P~~RIPRtykRF~GLM 184 (301)
-+||..++|+|+ ..+++++||-.----.++..+..++
T Consensus 37 ~gspA~~aG~L~------~GD~I~~ing~~v~~~~~~~~~~~l 73 (93)
T 3o46_A 37 RGGAADRSGLIH------VGDELREVNGIPVEDKRPEEIIQIL 73 (93)
T ss_dssp TTSHHHHHTCCC------TTCEEEEETTEESTTSCHHHHHHHH
T ss_pred CCCHHHHcCCCC------CCCEEEEECCEECCCCCHHHHHHHH
Confidence 479999999999 9999999996543335666666444
Done!