Query 022176
Match_columns 301
No_of_seqs 204 out of 1425
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05752 uroporphyrinogen-III 100.0 3.6E-45 7.9E-50 327.3 28.9 242 48-295 1-251 (255)
2 PRK08811 uroporphyrinogen-III 100.0 3.6E-45 7.8E-50 328.4 27.9 250 43-300 11-265 (266)
3 PRK07239 bifunctional uroporph 100.0 4.3E-42 9.3E-47 324.2 29.9 246 44-297 5-278 (381)
4 COG1587 HemD Uroporphyrinogen- 100.0 5.9E-42 1.3E-46 305.3 28.3 239 50-297 1-247 (248)
5 PRK05928 hemD uroporphyrinogen 100.0 3.1E-41 6.8E-46 299.5 28.3 239 50-295 1-248 (249)
6 PRK09189 uroporphyrinogen-III 100.0 2.9E-41 6.2E-46 299.5 26.0 232 51-293 1-239 (240)
7 PF02602 HEM4: Uroporphyrinoge 100.0 1.9E-39 4.1E-44 285.7 19.0 219 63-289 1-231 (231)
8 PRK06975 bifunctional uroporph 100.0 2.8E-38 6.1E-43 314.6 29.3 242 49-297 2-268 (656)
9 cd06578 HemD Uroporphyrinogen- 100.0 9.7E-38 2.1E-42 274.8 28.0 231 53-291 1-239 (239)
10 PRK07168 bifunctional uroporph 100.0 1.2E-33 2.6E-38 271.1 19.7 214 26-276 235-458 (474)
11 KOG4132 Uroporphyrinogen III s 100.0 9E-32 1.9E-36 226.4 23.4 242 51-299 4-259 (260)
12 PRK05928 hemD uroporphyrinogen 99.6 2.5E-15 5.4E-20 133.1 13.5 120 48-174 123-247 (249)
13 cd06578 HemD Uroporphyrinogen- 99.6 1.5E-14 3.4E-19 127.0 14.3 118 47-171 119-239 (239)
14 PRK08811 uroporphyrinogen-III 99.6 3.2E-14 7E-19 128.0 12.7 115 176-290 16-131 (266)
15 PRK05752 uroporphyrinogen-III 99.5 6.7E-14 1.5E-18 125.2 12.4 115 177-291 2-120 (255)
16 PRK07239 bifunctional uroporph 99.5 1.1E-13 2.4E-18 130.8 13.9 121 46-174 138-275 (381)
17 PRK07168 bifunctional uroporph 99.5 4.2E-13 9E-18 129.4 15.4 237 48-290 78-364 (474)
18 COG1587 HemD Uroporphyrinogen- 99.5 5E-13 1.1E-17 119.2 12.4 119 178-297 1-122 (248)
19 PF02602 HEM4: Uroporphyrinoge 99.4 1.3E-13 2.9E-18 121.1 6.9 116 47-169 114-231 (231)
20 PRK09189 uroporphyrinogen-III 99.4 2.7E-12 5.8E-17 113.8 13.7 118 48-172 116-238 (240)
21 PRK06975 bifunctional uroporph 99.4 4.4E-12 9.6E-17 127.2 14.1 119 177-295 2-134 (656)
22 KOG4132 Uroporphyrinogen III s 99.4 1E-11 2.2E-16 105.5 12.9 120 50-175 133-255 (260)
23 cd06298 PBP1_CcpA_like Ligand- 96.9 0.058 1.3E-06 47.4 15.8 179 64-263 20-215 (268)
24 cd06295 PBP1_CelR Ligand bindi 96.7 0.075 1.6E-06 47.1 14.7 180 65-264 32-225 (275)
25 cd01575 PBP1_GntR Ligand-bindi 96.5 0.074 1.6E-06 46.7 13.4 181 64-264 20-216 (268)
26 cd06299 PBP1_LacI_like_13 Liga 96.5 0.13 2.9E-06 45.1 15.1 179 64-263 20-213 (265)
27 cd06272 PBP1_hexuronate_repres 96.5 0.075 1.6E-06 46.7 13.3 203 64-294 20-237 (261)
28 cd06273 PBP1_GntR_like_1 This 96.5 0.1 2.2E-06 45.9 14.2 180 63-262 19-215 (268)
29 cd06283 PBP1_RegR_EndR_KdgR_li 96.4 0.2 4.3E-06 43.9 15.0 182 63-264 19-217 (267)
30 cd06271 PBP1_AglR_RafR_like Li 96.3 0.11 2.4E-06 45.6 13.3 181 63-263 23-219 (268)
31 cd01537 PBP1_Repressors_Sugar_ 96.2 0.16 3.5E-06 44.0 13.8 182 63-265 19-218 (264)
32 cd01542 PBP1_TreR_like Ligand- 96.2 0.26 5.6E-06 43.1 15.0 178 63-264 19-212 (259)
33 cd06309 PBP1_YtfQ_like Peripla 96.2 0.31 6.7E-06 43.1 15.6 218 63-295 19-257 (273)
34 cd06289 PBP1_MalI_like Ligand- 96.1 0.55 1.2E-05 41.1 16.4 180 64-264 20-217 (268)
35 cd06294 PBP1_ycjW_transcriptio 96.0 0.23 5E-06 43.6 13.6 183 63-264 24-222 (270)
36 cd06305 PBP1_methylthioribose_ 95.9 0.77 1.7E-05 40.4 16.8 190 63-270 19-228 (273)
37 cd06270 PBP1_GalS_like Ligand 95.9 0.56 1.2E-05 41.3 15.6 180 64-263 20-215 (268)
38 cd06274 PBP1_FruR Ligand bindi 95.8 0.96 2.1E-05 39.6 16.8 181 64-264 20-217 (264)
39 cd06288 PBP1_sucrose_transcrip 95.7 0.41 8.9E-06 42.0 14.2 179 64-263 21-215 (269)
40 COG1609 PurR Transcriptional r 95.7 0.37 8.1E-06 44.7 14.1 181 63-262 78-274 (333)
41 TIGR02853 spore_dpaA dipicolin 95.7 0.95 2.1E-05 41.2 16.4 213 50-279 1-262 (287)
42 cd06301 PBP1_rhizopine_binding 95.6 0.45 9.9E-06 41.9 14.1 179 64-262 20-219 (272)
43 PRK11303 DNA-binding transcrip 95.6 0.47 1E-05 43.3 14.5 178 64-263 82-276 (328)
44 PRK02261 methylaspartate mutas 95.6 0.71 1.5E-05 37.2 13.8 113 178-297 3-136 (137)
45 TIGR01481 ccpA catabolite cont 95.6 0.76 1.6E-05 41.9 15.9 180 65-264 81-275 (329)
46 cd06284 PBP1_LacI_like_6 Ligan 95.6 1.2 2.6E-05 38.9 16.6 180 63-263 19-214 (267)
47 PRK10423 transcriptional repre 95.6 1 2.2E-05 41.0 16.7 181 64-264 77-274 (327)
48 cd06286 PBP1_CcpB_like Ligand- 95.6 0.42 9.1E-06 41.8 13.6 180 63-263 19-213 (260)
49 cd06290 PBP1_LacI_like_9 Ligan 95.6 0.48 1.1E-05 41.5 14.0 179 64-263 20-214 (265)
50 cd06285 PBP1_LacI_like_7 Ligan 95.5 0.67 1.4E-05 40.7 14.8 179 63-263 19-213 (265)
51 cd06281 PBP1_LacI_like_5 Ligan 95.5 0.58 1.2E-05 41.3 14.3 178 64-263 20-214 (269)
52 cd06279 PBP1_LacI_like_3 Ligan 95.4 0.46 1E-05 42.4 13.5 178 63-263 24-233 (283)
53 cd06297 PBP1_LacI_like_12 Liga 95.4 0.55 1.2E-05 41.6 13.8 180 63-263 19-218 (269)
54 cd06320 PBP1_allose_binding Pe 95.4 0.56 1.2E-05 41.4 13.7 182 64-263 20-218 (275)
55 cd06296 PBP1_CatR_like Ligand- 95.3 0.39 8.5E-06 42.2 12.5 206 64-293 20-242 (270)
56 PRK02261 methylaspartate mutas 95.3 0.69 1.5E-05 37.3 12.7 113 49-174 2-133 (137)
57 cd06267 PBP1_LacI_sugar_bindin 95.3 1.4 3E-05 38.1 15.8 179 64-262 20-214 (264)
58 cd06310 PBP1_ABC_sugar_binding 95.3 0.58 1.3E-05 41.2 13.5 183 63-263 19-219 (273)
59 cd06323 PBP1_ribose_binding Pe 95.2 1.7 3.6E-05 38.0 16.3 181 64-264 20-217 (268)
60 PRK10014 DNA-binding transcrip 95.2 0.94 2E-05 41.5 15.2 179 65-264 86-291 (342)
61 cd06275 PBP1_PurR Ligand-bindi 95.2 1.1 2.3E-05 39.3 15.0 181 64-263 20-216 (269)
62 cd06282 PBP1_GntR_like_2 Ligan 95.2 0.58 1.3E-05 40.9 13.1 177 64-263 20-214 (266)
63 cd06278 PBP1_LacI_like_2 Ligan 95.2 0.4 8.6E-06 41.9 12.0 175 64-263 20-213 (266)
64 cd06316 PBP1_ABC_sugar_binding 95.1 0.77 1.7E-05 41.2 14.1 186 65-264 21-222 (294)
65 PF06506 PrpR_N: Propionate ca 95.1 1.7 3.7E-05 36.4 15.2 132 127-296 33-165 (176)
66 cd01545 PBP1_SalR Ligand-bindi 95.1 0.89 1.9E-05 39.8 14.1 184 63-263 19-217 (270)
67 cd06292 PBP1_LacI_like_10 Liga 94.9 1.2 2.5E-05 39.3 14.4 184 63-264 19-220 (273)
68 cd06280 PBP1_LacI_like_4 Ligan 94.9 0.58 1.3E-05 41.1 12.3 203 63-293 19-236 (263)
69 PRK10703 DNA-binding transcrip 94.7 1.2 2.6E-05 40.8 14.4 181 64-263 80-277 (341)
70 cd06300 PBP1_ABC_sugar_binding 94.7 1.4 3.1E-05 38.7 14.4 157 101-277 59-236 (272)
71 cd06313 PBP1_ABC_sugar_binding 94.7 1.2 2.6E-05 39.5 13.9 192 64-273 20-229 (272)
72 PF13407 Peripla_BP_4: Peripla 94.7 0.72 1.6E-05 40.3 12.3 193 63-274 18-231 (257)
73 TIGR01501 MthylAspMutase methy 94.6 1.2 2.6E-05 35.8 12.1 101 189-296 17-133 (134)
74 cd01541 PBP1_AraR Ligand-bindi 94.4 1.8 3.8E-05 38.2 14.4 180 64-263 20-221 (273)
75 cd01574 PBP1_LacI Ligand-bindi 94.4 1.5 3.2E-05 38.3 13.8 179 63-263 19-212 (264)
76 cd06293 PBP1_LacI_like_11 Liga 94.3 2.7 6E-05 36.8 15.4 179 64-263 20-215 (269)
77 COG2185 Sbm Methylmalonyl-CoA 94.3 0.99 2.1E-05 36.6 11.0 107 49-167 11-130 (143)
78 PRK08306 dipicolinate synthase 94.2 2.8 6E-05 38.3 15.3 208 50-278 2-262 (296)
79 PF00532 Peripla_BP_1: Peripla 94.0 0.37 8.1E-06 43.5 9.2 168 64-251 22-203 (279)
80 cd02072 Glm_B12_BD B12 binding 94.0 1.3 2.8E-05 35.3 11.1 97 189-292 15-127 (128)
81 cd06277 PBP1_LacI_like_1 Ligan 94.0 2.1 4.5E-05 37.5 13.9 179 64-263 23-215 (268)
82 PRK10653 D-ribose transporter 93.9 2.5 5.5E-05 37.9 14.5 178 63-263 46-242 (295)
83 TIGR00640 acid_CoA_mut_C methy 93.9 1.5 3.2E-05 35.2 11.4 101 189-296 18-128 (132)
84 cd01536 PBP1_ABC_sugar_binding 93.9 2.5 5.4E-05 36.6 14.1 181 64-262 20-216 (267)
85 TIGR00640 acid_CoA_mut_C methy 93.6 2.1 4.5E-05 34.3 11.7 111 50-173 2-125 (132)
86 TIGR02417 fruct_sucro_rep D-fr 93.4 3.5 7.7E-05 37.5 14.7 177 64-263 81-275 (327)
87 cd06314 PBP1_tmGBP Periplasmic 93.3 1.1 2.3E-05 39.7 10.7 180 64-265 19-217 (271)
88 cd02072 Glm_B12_BD B12 binding 93.2 1.3 2.8E-05 35.4 9.8 97 63-172 17-127 (128)
89 cd06287 PBP1_LacI_like_8 Ligan 93.1 2 4.3E-05 38.2 12.2 171 63-259 27-212 (269)
90 PRK10727 DNA-binding transcrip 93.1 4 8.7E-05 37.5 14.6 178 64-263 80-275 (343)
91 cd01544 PBP1_GalR Ligand-bindi 93.0 6 0.00013 34.8 15.6 200 63-294 24-244 (270)
92 cd06312 PBP1_ABC_sugar_binding 92.9 4.2 9.1E-05 35.8 13.9 184 63-263 20-219 (271)
93 TIGR01501 MthylAspMutase methy 92.8 2.6 5.7E-05 33.9 11.2 110 51-173 2-130 (134)
94 cd06354 PBP1_BmpA_PnrA_like Pe 92.8 4.3 9.2E-05 35.9 13.8 179 64-262 23-214 (265)
95 PF10087 DUF2325: Uncharacteri 92.4 2.6 5.7E-05 31.6 10.2 95 180-294 1-96 (97)
96 PRK10401 DNA-binding transcrip 92.3 5.9 0.00013 36.4 14.7 180 64-264 80-276 (346)
97 cd02071 MM_CoA_mut_B12_BD meth 92.3 2.1 4.5E-05 33.6 10.0 97 63-172 17-121 (122)
98 cd06307 PBP1_uncharacterized_s 92.3 5 0.00011 35.3 13.6 185 64-263 20-221 (275)
99 cd06302 PBP1_LsrB_Quorum_Sensi 92.2 2.3 5E-05 38.3 11.5 187 64-270 20-230 (298)
100 cd06308 PBP1_sensor_kinase_lik 92.0 4 8.6E-05 35.9 12.7 179 64-262 20-217 (270)
101 cd06276 PBP1_FucR_like Ligand- 92.0 6 0.00013 34.6 13.6 198 63-295 18-228 (247)
102 PRK09492 treR trehalose repres 91.8 9.6 0.00021 34.3 16.5 174 63-263 82-267 (315)
103 TIGR02329 propionate_PrpR prop 91.7 9.7 0.00021 37.8 15.9 130 128-296 54-184 (526)
104 cd06317 PBP1_ABC_sugar_binding 91.5 6.2 0.00014 34.5 13.3 182 64-263 21-223 (275)
105 PRK14987 gluconate operon tran 91.5 10 0.00022 34.5 15.2 178 64-263 84-277 (331)
106 cd06291 PBP1_Qymf_like Ligand 91.2 6.7 0.00014 34.2 13.2 175 63-263 19-211 (265)
107 PRK09496 trkA potassium transp 91.1 15 0.00033 35.2 18.4 216 51-280 1-262 (453)
108 cd01391 Periplasmic_Binding_Pr 90.7 9.3 0.0002 32.3 14.9 150 101-263 57-219 (269)
109 cd06319 PBP1_ABC_sugar_binding 90.5 6.3 0.00014 34.5 12.4 177 64-262 20-220 (277)
110 PRK09526 lacI lac repressor; R 90.5 4.7 0.0001 36.9 11.9 175 64-263 84-278 (342)
111 cd06318 PBP1_ABC_sugar_binding 90.3 12 0.00026 32.9 19.0 184 63-263 19-226 (282)
112 PF04392 ABC_sub_bind: ABC tra 90.1 10 0.00022 34.3 13.7 188 63-262 18-219 (294)
113 cd06322 PBP1_ABC_sugar_binding 89.6 13 0.00028 32.3 17.1 180 63-263 19-214 (267)
114 COG4822 CbiK Cobalamin biosynt 89.5 9.2 0.0002 33.2 11.6 141 64-213 64-238 (265)
115 PRK06756 flavodoxin; Provision 89.4 4.6 0.0001 32.5 9.7 95 191-294 20-139 (148)
116 cd01538 PBP1_ABC_xylose_bindin 89.3 15 0.00033 32.6 16.0 179 64-264 20-227 (288)
117 PRK09701 D-allose transporter 88.8 7.5 0.00016 35.3 11.7 185 63-263 44-252 (311)
118 COG2185 Sbm Methylmalonyl-CoA 88.5 11 0.00023 30.7 10.9 112 179-297 13-139 (143)
119 cd02071 MM_CoA_mut_B12_BD meth 88.1 3.7 7.9E-05 32.2 8.0 96 190-292 16-121 (122)
120 cd02067 B12-binding B12 bindin 87.3 7.2 0.00016 30.1 9.3 83 63-157 17-107 (119)
121 cd06306 PBP1_TorT-like TorT-li 87.1 7.2 0.00016 34.3 10.3 187 64-270 20-228 (268)
122 cd06303 PBP1_LuxPQ_Quorum_Sens 87.1 21 0.00045 31.6 14.7 188 63-263 20-226 (280)
123 cd06324 PBP1_ABC_sugar_binding 86.9 23 0.00049 31.9 18.1 186 64-263 21-240 (305)
124 cd01543 PBP1_XylR Ligand-bindi 86.9 18 0.00038 31.6 12.7 175 64-263 19-209 (265)
125 PLN02928 oxidoreductase family 86.7 25 0.00053 32.9 14.0 31 177-207 158-188 (347)
126 PRK15424 propionate catabolism 86.1 39 0.00084 33.7 17.4 130 128-296 64-194 (538)
127 PRK10339 DNA-binding transcrip 85.6 28 0.0006 31.6 14.7 171 64-263 88-272 (327)
128 PRK10537 voltage-gated potassi 85.5 11 0.00024 36.0 11.1 114 178-291 240-368 (393)
129 PF13344 Hydrolase_6: Haloacid 85.4 10 0.00022 28.6 8.9 80 164-274 19-101 (101)
130 PRK14192 bifunctional 5,10-met 85.3 13 0.00027 33.9 10.9 151 64-237 53-211 (283)
131 PRK11790 D-3-phosphoglycerate 84.8 25 0.00053 33.8 13.2 173 46-240 6-215 (409)
132 cd06321 PBP1_ABC_sugar_binding 84.6 26 0.00057 30.5 19.0 146 101-262 56-215 (271)
133 cd06304 PBP1_BmpA_like Peripla 84.6 21 0.00045 31.2 11.9 177 64-262 22-210 (260)
134 PRK15438 erythronate-4-phospha 84.5 12 0.00026 35.5 10.7 163 51-240 1-179 (378)
135 PRK10669 putative cation:proto 83.9 11 0.00024 37.6 10.8 115 179-298 418-550 (558)
136 PRK06756 flavodoxin; Provision 83.8 5.9 0.00013 31.9 7.4 66 63-138 20-93 (148)
137 PRK12480 D-lactate dehydrogena 83.7 37 0.00081 31.5 15.1 171 51-240 2-210 (330)
138 PRK15408 autoinducer 2-binding 83.6 22 0.00049 32.9 12.2 175 64-260 44-241 (336)
139 PRK09496 trkA potassium transp 83.1 13 0.00029 35.6 10.8 105 177-281 230-352 (453)
140 cd06311 PBP1_ABC_sugar_binding 82.8 32 0.00069 30.1 17.1 153 101-272 59-231 (274)
141 TIGR02955 TMAO_TorT TMAO reduc 82.7 32 0.00069 30.8 12.6 186 64-273 20-230 (295)
142 cd01539 PBP1_GGBP Periplasmic 82.3 37 0.0008 30.5 16.3 185 64-262 20-241 (303)
143 cd00401 AdoHcyase S-adenosyl-L 82.1 45 0.00098 32.1 13.7 37 44-80 30-67 (413)
144 PF03358 FMN_red: NADPH-depend 81.8 2.2 4.9E-05 34.3 4.2 71 63-134 21-112 (152)
145 PRK10569 NAD(P)H-dependent FMN 81.8 8.1 0.00017 32.9 7.8 58 192-249 22-94 (191)
146 PF04016 DUF364: Domain of unk 81.4 1.2 2.7E-05 36.3 2.5 111 177-293 10-130 (147)
147 cd01540 PBP1_arabinose_binding 81.3 14 0.0003 32.7 9.6 68 63-137 19-88 (289)
148 PF03358 FMN_red: NADPH-depend 81.1 5.4 0.00012 32.0 6.3 58 191-248 21-97 (152)
149 PRK06703 flavodoxin; Provision 80.8 21 0.00046 28.7 9.7 75 192-275 21-116 (151)
150 PRK08339 short chain dehydroge 80.3 39 0.00084 29.8 12.1 75 47-125 5-84 (263)
151 PRK11041 DNA-binding transcrip 80.3 43 0.00092 29.8 16.3 181 63-263 55-251 (309)
152 cd02070 corrinoid_protein_B12- 80.2 36 0.00079 29.0 11.4 91 50-146 82-183 (201)
153 cd03785 GT1_MurG MurG is an N- 79.8 28 0.0006 31.7 11.3 103 180-297 213-324 (350)
154 PF02401 LYTB: LytB protein; 79.8 48 0.001 30.1 14.5 228 51-297 29-280 (281)
155 PF00148 Oxidored_nitro: Nitro 78.9 44 0.00096 31.5 12.6 228 47-296 141-395 (398)
156 cd00316 Oxidoreductase_nitroge 78.7 59 0.0013 30.5 18.5 216 61-296 167-396 (399)
157 cd06341 PBP1_ABC_ligand_bindin 78.7 52 0.0011 29.9 14.0 137 101-251 66-212 (341)
158 TIGR02405 trehalos_R_Ecol treh 78.6 50 0.0011 29.7 15.0 201 63-294 79-291 (311)
159 PRK10569 NAD(P)H-dependent FMN 78.6 11 0.00023 32.2 7.5 65 57-121 11-92 (191)
160 PRK10537 voltage-gated potassi 78.4 22 0.00047 34.0 10.2 116 49-173 239-370 (393)
161 TIGR02637 RhaS rhamnose ABC tr 77.4 52 0.0011 29.3 13.7 55 227-282 184-241 (302)
162 cd05564 PTS_IIB_chitobiose_lic 77.4 25 0.00055 26.2 8.4 75 180-263 1-80 (96)
163 PRK00257 erythronate-4-phospha 77.2 30 0.00066 32.9 10.8 163 51-240 1-179 (381)
164 cd01972 Nitrogenase_VnfE_like 76.5 74 0.0016 30.6 16.6 224 60-296 179-422 (426)
165 PRK00726 murG undecaprenyldiph 76.2 50 0.0011 30.3 12.0 102 180-297 214-324 (357)
166 cd01979 Pchlide_reductase_N Pc 74.5 69 0.0015 30.4 12.6 216 60-297 167-393 (396)
167 COG2014 Uncharacterized conser 74.0 35 0.00075 29.7 9.1 144 131-294 80-233 (250)
168 cd02067 B12-binding B12 bindin 73.9 30 0.00065 26.5 8.4 82 190-277 16-107 (119)
169 TIGR01753 flav_short flavodoxi 73.9 11 0.00023 29.6 6.0 63 63-136 17-88 (140)
170 PF02310 B12-binding: B12 bind 73.9 21 0.00047 27.2 7.6 70 62-137 17-90 (121)
171 cd06167 LabA_like LabA_like pr 73.4 13 0.00027 29.8 6.3 83 61-145 53-142 (149)
172 cd01974 Nitrogenase_MoFe_beta 73.3 90 0.002 30.1 17.4 141 62-210 176-335 (435)
173 TIGR01285 nifN nitrogenase mol 73.1 92 0.002 30.1 13.6 145 60-212 181-345 (432)
174 TIGR00853 pts-lac PTS system, 73.1 36 0.00079 25.4 9.8 78 179-265 4-86 (95)
175 COG4635 HemG Flavodoxin [Energ 73.0 9.1 0.0002 31.7 5.2 66 62-138 18-91 (175)
176 PRK06703 flavodoxin; Provision 72.9 10 0.00023 30.5 5.8 63 63-136 20-90 (151)
177 PF06180 CbiK: Cobalt chelatas 72.0 15 0.00034 32.9 7.0 139 63-205 61-237 (262)
178 TIGR00936 ahcY adenosylhomocys 71.4 99 0.0022 29.7 15.0 36 44-79 26-62 (406)
179 TIGR02634 xylF D-xylose ABC tr 71.2 78 0.0017 28.4 14.8 176 63-261 18-218 (302)
180 PRK07765 para-aminobenzoate sy 70.7 61 0.0013 28.0 10.3 93 51-156 1-98 (214)
181 COG0569 TrkA K+ transport syst 70.6 49 0.0011 28.8 9.8 108 180-287 2-128 (225)
182 PRK14191 bifunctional 5,10-met 70.4 65 0.0014 29.4 10.7 150 64-238 51-210 (285)
183 cd01965 Nitrogenase_MoFe_beta_ 70.1 1.1E+02 0.0023 29.5 17.5 143 61-210 170-331 (428)
184 cd06325 PBP1_ABC_uncharacteriz 70.1 74 0.0016 27.7 14.3 153 101-263 59-220 (281)
185 TIGR01133 murG undecaprenyldip 69.7 58 0.0012 29.6 10.6 105 179-298 210-322 (348)
186 PF03808 Glyco_tran_WecB: Glyc 69.6 54 0.0012 27.2 9.5 124 131-265 9-138 (172)
187 PRK01175 phosphoribosylformylg 69.4 41 0.0009 30.2 9.2 90 50-155 3-109 (261)
188 PRK02910 light-independent pro 69.3 1.2E+02 0.0027 30.0 20.3 143 60-212 175-328 (519)
189 PRK06490 glutamine amidotransf 69.0 39 0.00084 29.8 8.9 94 49-157 6-109 (239)
190 PRK07308 flavodoxin; Validated 68.8 17 0.00036 29.1 6.1 74 52-136 5-90 (146)
191 TIGR03567 FMN_reduc_SsuE FMN r 68.8 20 0.00043 29.7 6.7 57 193-249 22-93 (171)
192 cd06315 PBP1_ABC_sugar_binding 68.3 84 0.0018 27.6 16.3 192 64-268 21-232 (280)
193 TIGR03566 FMN_reduc_MsuE FMN r 68.0 21 0.00046 29.5 6.7 27 222-248 62-95 (174)
194 PRK00107 gidB 16S rRNA methylt 67.8 63 0.0014 27.3 9.6 53 164-216 124-176 (187)
195 PLN02516 methylenetetrahydrofo 67.8 61 0.0013 29.8 10.0 156 65-239 60-221 (299)
196 PRK09426 methylmalonyl-CoA mut 67.7 62 0.0013 33.5 11.1 110 50-172 582-704 (714)
197 PRK09590 celB cellobiose phosp 66.6 56 0.0012 24.9 9.2 94 179-294 2-103 (104)
198 COG0075 Serine-pyruvate aminot 66.5 15 0.00033 34.8 6.1 65 44-109 74-138 (383)
199 PRK08057 cobalt-precorrin-6x r 65.9 98 0.0021 27.5 13.5 192 50-278 2-221 (248)
200 cd05565 PTS_IIB_lactose PTS_II 65.9 43 0.00093 25.3 7.3 75 180-264 2-82 (99)
201 PRK14175 bifunctional 5,10-met 65.9 74 0.0016 29.0 10.1 150 64-239 52-212 (286)
202 PRK09426 methylmalonyl-CoA mut 65.7 37 0.00081 35.1 9.1 100 190-296 599-708 (714)
203 TIGR03567 FMN_reduc_SsuE FMN r 65.6 20 0.00044 29.6 6.1 68 66-133 23-103 (171)
204 PRK13982 bifunctional SbtC-lik 65.6 27 0.0006 34.2 7.7 34 46-79 252-302 (475)
205 PRK10669 putative cation:proto 65.5 76 0.0017 31.6 11.2 114 51-173 418-549 (558)
206 PRK09271 flavodoxin; Provision 65.3 32 0.0007 28.1 7.2 67 63-136 19-93 (160)
207 PRK10936 TMAO reductase system 65.2 1E+02 0.0022 28.3 11.4 186 64-273 67-277 (343)
208 PRK08250 glutamine amidotransf 65.1 43 0.00093 29.4 8.3 91 51-156 1-106 (235)
209 TIGR02690 resist_ArsH arsenica 64.9 52 0.0011 28.7 8.7 89 47-136 23-136 (219)
210 PRK05569 flavodoxin; Provision 64.8 19 0.00041 28.5 5.6 38 99-136 45-91 (141)
211 cd01080 NAD_bind_m-THF_DH_Cycl 64.6 32 0.00069 28.6 7.1 69 163-239 27-98 (168)
212 TIGR00288 conserved hypothetic 64.4 45 0.00097 27.7 7.7 76 63-145 69-148 (160)
213 cd01976 Nitrogenase_MoFe_alpha 64.4 1.4E+02 0.003 28.7 17.7 216 60-295 185-416 (421)
214 PF13458 Peripla_BP_6: Peripla 64.3 1.1E+02 0.0024 27.5 13.3 137 101-251 68-214 (343)
215 PF03709 OKR_DC_1_N: Orn/Lys/A 64.3 54 0.0012 25.3 7.9 68 62-138 6-77 (115)
216 PRK14719 bifunctional RNAse/5- 63.9 73 0.0016 30.0 10.0 79 118-205 14-99 (360)
217 COG0826 Collagenase and relate 63.2 1.1E+02 0.0024 28.7 11.1 68 227-294 91-159 (347)
218 PF00389 2-Hacid_dh: D-isomer 63.1 54 0.0012 25.6 7.9 95 53-171 1-101 (133)
219 PRK06895 putative anthranilate 62.8 76 0.0017 26.6 9.3 87 51-155 2-93 (190)
220 cd01743 GATase1_Anthranilate_S 62.0 45 0.00097 27.8 7.6 87 54-156 3-93 (184)
221 PRK03094 hypothetical protein; 61.4 41 0.00089 24.5 6.1 71 189-295 9-79 (80)
222 cd06320 PBP1_allose_binding Pe 61.0 48 0.001 28.9 8.1 75 63-137 142-218 (275)
223 PRK05579 bifunctional phosphop 61.0 38 0.00083 32.4 7.8 34 46-79 184-234 (399)
224 cd00615 Orn_deC_like Ornithine 61.0 27 0.00058 31.5 6.5 63 48-112 97-164 (294)
225 cd01391 Periplasmic_Binding_Pr 60.9 52 0.0011 27.6 8.1 75 63-137 143-219 (269)
226 PRK05670 anthranilate synthase 60.6 1E+02 0.0022 25.8 10.6 86 55-156 5-94 (189)
227 PF02254 TrkA_N: TrkA-N domain 60.4 70 0.0015 24.0 9.7 104 161-279 7-116 (116)
228 PRK06849 hypothetical protein; 60.2 55 0.0012 30.8 8.7 90 49-141 3-113 (389)
229 PRK11921 metallo-beta-lactamas 60.0 1.4E+02 0.0029 28.4 11.4 97 192-294 267-385 (394)
230 TIGR03427 ABC_peri_uca ABC tra 59.8 1.5E+02 0.0032 27.5 12.8 140 64-241 25-166 (328)
231 PRK14176 bifunctional 5,10-met 59.6 1.3E+02 0.0028 27.4 10.5 148 64-236 58-215 (287)
232 PLN03139 formate dehydrogenase 59.5 1.6E+02 0.0034 28.1 11.6 157 61-238 63-265 (386)
233 PRK07053 glutamine amidotransf 59.5 65 0.0014 28.3 8.5 92 50-156 2-105 (234)
234 PRK14476 nitrogenase molybdenu 59.2 1.1E+02 0.0024 29.8 10.7 192 60-275 182-392 (455)
235 PRK14179 bifunctional 5,10-met 58.9 1.4E+02 0.0031 27.1 11.0 148 66-238 54-211 (284)
236 PF11798 IMS_HHH: IMS family H 58.8 7.8 0.00017 22.8 1.7 32 237-273 1-32 (32)
237 PRK05476 S-adenosyl-L-homocyst 58.0 1.8E+02 0.004 28.1 18.4 161 44-213 42-244 (425)
238 PRK05452 anaerobic nitric oxid 58.0 1.6E+02 0.0036 28.8 11.8 95 190-287 269-382 (479)
239 cd03466 Nitrogenase_NifN_2 Nit 58.0 1.8E+02 0.0039 28.0 16.8 223 59-296 167-426 (429)
240 PRK02812 ribose-phosphate pyro 57.6 1.6E+02 0.0035 27.3 13.4 208 46-281 64-291 (330)
241 PLN02369 ribose-phosphate pyro 57.5 1.6E+02 0.0034 27.1 13.9 210 46-281 34-263 (302)
242 cd03129 GAT1_Peptidase_E_like 57.5 87 0.0019 26.7 8.8 66 177-246 28-98 (210)
243 smart00852 MoCF_biosynth Proba 57.2 17 0.00038 28.7 4.1 50 61-114 19-69 (135)
244 cd01740 GATase1_FGAR_AT Type 1 56.7 77 0.0017 27.8 8.5 75 61-145 11-98 (238)
245 cd01741 GATase1_1 Subgroup of 56.4 90 0.0019 25.9 8.6 90 53-155 4-102 (188)
246 cd06341 PBP1_ABC_ligand_bindin 56.4 62 0.0013 29.4 8.2 64 63-128 151-215 (341)
247 PF04127 DFP: DNA / pantothena 56.2 32 0.00069 29.2 5.7 19 61-79 31-49 (185)
248 cd03132 GATase1_catalase Type 55.9 98 0.0021 24.3 8.6 70 228-299 62-142 (142)
249 PRK09739 hypothetical protein; 55.7 31 0.00067 29.2 5.7 50 63-112 24-89 (199)
250 TIGR00521 coaBC_dfp phosphopan 55.4 49 0.0011 31.5 7.4 34 46-79 181-231 (390)
251 cd05212 NAD_bind_m-THF_DH_Cycl 55.3 45 0.00097 26.9 6.2 78 46-137 24-102 (140)
252 PRK08605 D-lactate dehydrogena 55.2 1.6E+02 0.0035 27.2 10.7 60 177-239 145-211 (332)
253 PRK11776 ATP-dependent RNA hel 55.2 1E+02 0.0022 29.8 9.8 39 165-204 231-269 (460)
254 COG0426 FpaA Uncharacterized f 55.1 1E+02 0.0023 29.3 9.4 120 163-287 229-376 (388)
255 PRK03619 phosphoribosylformylg 55.1 92 0.002 27.0 8.6 80 51-145 1-95 (219)
256 PRK05568 flavodoxin; Provision 55.1 32 0.00069 27.2 5.3 72 53-136 6-90 (142)
257 TIGR03590 PseG pseudaminic aci 54.9 1.6E+02 0.0034 26.4 20.2 70 50-123 31-101 (279)
258 PRK06849 hypothetical protein; 54.9 1.7E+02 0.0038 27.4 11.2 96 178-275 4-131 (389)
259 PRK02842 light-independent pro 54.9 2E+02 0.0044 27.6 12.1 196 60-275 178-381 (427)
260 cd04949 GT1_gtfA_like This fam 54.7 1.7E+02 0.0037 26.7 11.9 183 98-298 153-346 (372)
261 PRK10307 putative glycosyl tra 54.5 1.9E+02 0.0041 27.1 15.3 175 100-297 169-373 (412)
262 PF04273 DUF442: Putative phos 54.4 30 0.00066 26.6 4.9 69 51-119 29-104 (110)
263 COG0647 NagD Predicted sugar p 54.4 46 0.001 30.0 6.7 86 56-155 23-113 (269)
264 PRK08306 dipicolinate synthase 54.3 1.2E+02 0.0026 27.6 9.6 96 178-276 2-118 (296)
265 PRK06079 enoyl-(acyl carrier p 54.0 62 0.0013 28.2 7.5 70 46-123 3-79 (252)
266 PRK07825 short chain dehydroge 54.0 1.5E+02 0.0033 25.9 12.7 71 47-124 2-75 (273)
267 TIGR02663 nifX nitrogen fixati 53.8 23 0.0005 27.5 4.2 39 259-297 71-109 (119)
268 PRK14188 bifunctional 5,10-met 53.6 90 0.0019 28.6 8.5 126 64-207 52-188 (296)
269 cd03466 Nitrogenase_NifN_2 Nit 53.6 1.9E+02 0.0041 27.8 11.3 39 254-292 300-343 (429)
270 PRK10792 bifunctional 5,10-met 53.5 1.8E+02 0.0038 26.6 10.3 147 64-236 53-210 (285)
271 PF13344 Hydrolase_6: Haloacid 53.5 23 0.0005 26.6 4.0 78 60-145 17-98 (101)
272 cd06289 PBP1_MalI_like Ligand- 53.0 1.2E+02 0.0026 26.0 9.2 76 63-138 137-217 (268)
273 CHL00073 chlN photochlorophyll 52.8 1.7E+02 0.0036 28.7 10.6 225 52-298 195-443 (457)
274 COG0499 SAM1 S-adenosylhomocys 52.7 2.1E+02 0.0046 27.2 13.1 38 44-81 39-77 (420)
275 PLN02409 serine--glyoxylate am 52.7 43 0.00094 31.7 6.7 62 49-111 83-146 (401)
276 PF02310 B12-binding: B12 bind 52.6 94 0.002 23.5 7.5 85 189-279 16-111 (121)
277 PRK09004 FMN-binding protein M 52.4 40 0.00086 27.2 5.5 61 63-136 20-90 (146)
278 PF10087 DUF2325: Uncharacteri 52.1 94 0.002 23.0 7.9 56 53-113 2-59 (97)
279 cd06268 PBP1_ABC_transporter_L 52.0 1.5E+02 0.0034 25.4 14.7 151 101-263 65-225 (298)
280 PLN02522 ATP citrate (pro-S)-l 51.9 2.8E+02 0.006 28.3 18.2 208 72-296 56-315 (608)
281 cd01080 NAD_bind_m-THF_DH_Cycl 51.9 54 0.0012 27.3 6.3 58 46-113 40-98 (168)
282 cd06282 PBP1_GntR_like_2 Ligan 51.8 45 0.00099 28.7 6.3 72 63-136 137-213 (266)
283 COG5426 Uncharacterized membra 51.5 13 0.00027 31.8 2.4 48 59-111 31-78 (254)
284 TIGR02149 glgA_Coryne glycogen 51.5 2E+02 0.0042 26.4 13.0 182 100-298 142-353 (388)
285 PRK00087 4-hydroxy-3-methylbut 51.1 2.9E+02 0.0062 28.3 13.1 210 50-298 30-278 (647)
286 PF02579 Nitro_FeMo-Co: Dinitr 51.1 24 0.00051 25.6 3.7 33 259-292 61-93 (94)
287 PF13377 Peripla_BP_3: Peripla 51.0 43 0.00094 26.5 5.6 84 179-262 10-105 (160)
288 cd01537 PBP1_Repressors_Sugar_ 50.7 76 0.0016 26.9 7.5 45 94-138 170-217 (264)
289 PRK14478 nitrogenase molybdenu 50.6 2.5E+02 0.0055 27.4 17.7 197 60-275 204-414 (475)
290 PRK11303 DNA-binding transcrip 50.6 1.2E+02 0.0025 27.3 9.0 71 63-136 199-275 (328)
291 TIGR01737 FGAM_synth_I phospho 50.4 93 0.002 27.1 7.9 80 51-145 1-94 (227)
292 TIGR02690 resist_ArsH arsenica 50.4 1.6E+02 0.0035 25.7 9.3 73 177-250 25-119 (219)
293 cd05844 GT1_like_7 Glycosyltra 50.1 1.7E+02 0.0038 26.4 10.2 124 164-298 203-337 (367)
294 PRK08410 2-hydroxyacid dehydro 49.9 2.1E+02 0.0045 26.3 14.3 65 177-241 144-209 (311)
295 PF03853 YjeF_N: YjeF-related 49.7 34 0.00073 28.4 4.8 35 176-210 23-61 (169)
296 PF11731 Cdd1: Pathogenicity l 49.7 17 0.00036 27.3 2.6 38 258-295 18-55 (93)
297 cd03794 GT1_wbuB_like This fam 49.6 1.9E+02 0.0041 25.7 12.9 184 100-298 163-366 (394)
298 cd01968 Nitrogenase_NifE_I Nit 49.3 2.4E+02 0.0052 26.8 19.2 219 59-296 170-403 (410)
299 PLN02897 tetrahydrofolate dehy 49.3 1.4E+02 0.003 28.0 9.1 69 162-238 196-267 (345)
300 PRK09922 UDP-D-galactose:(gluc 49.2 2E+02 0.0043 26.4 10.5 122 166-299 199-326 (359)
301 PRK05569 flavodoxin; Provision 48.6 1.1E+02 0.0025 23.9 7.6 104 181-294 6-135 (141)
302 PF02571 CbiJ: Precorrin-6x re 48.6 2E+02 0.0043 25.6 12.8 198 51-278 1-225 (249)
303 cd01966 Nitrogenase_NifN_1 Nit 48.5 1.6E+02 0.0035 28.2 9.9 142 60-209 171-331 (417)
304 TIGR01284 alt_nitrog_alph nitr 48.5 2.7E+02 0.0058 27.1 18.4 212 61-296 213-442 (457)
305 COG1184 GCD2 Translation initi 48.4 28 0.0006 31.9 4.3 28 52-79 147-176 (301)
306 cd06326 PBP1_STKc_like Type I 48.4 2E+02 0.0044 25.7 15.6 148 101-261 67-224 (336)
307 cd03129 GAT1_Peptidase_E_like 48.3 98 0.0021 26.4 7.7 69 49-124 28-101 (210)
308 COG0647 NagD Predicted sugar p 48.2 91 0.002 28.1 7.6 40 232-275 73-113 (269)
309 COG0569 TrkA K+ transport syst 48.2 1.8E+02 0.004 25.2 14.6 188 51-249 1-222 (225)
310 PRK14189 bifunctional 5,10-met 48.1 2E+02 0.0044 26.2 9.8 149 64-238 52-211 (285)
311 TIGR01753 flav_short flavodoxi 48.1 1.3E+02 0.0028 23.3 9.3 69 227-296 44-137 (140)
312 TIGR01459 HAD-SF-IIA-hyp4 HAD- 48.0 1.7E+02 0.0037 25.4 9.3 78 56-138 23-105 (242)
313 cd06309 PBP1_YtfQ_like Peripla 48.0 1.8E+02 0.004 25.1 9.8 47 93-139 175-225 (273)
314 TIGR03566 FMN_reduc_MsuE FMN r 48.0 56 0.0012 27.0 5.9 42 71-112 29-78 (174)
315 PRK08213 gluconate 5-dehydroge 47.7 1.1E+02 0.0023 26.6 8.0 79 33-123 3-85 (259)
316 COG0075 Serine-pyruvate aminot 47.5 1.2E+02 0.0026 28.9 8.5 56 177-235 79-138 (383)
317 PTZ00110 helicase; Provisional 47.2 2.1E+02 0.0045 28.5 10.8 39 166-204 365-404 (545)
318 TIGR03590 PseG pseudaminic aci 47.1 95 0.002 27.9 7.7 38 166-207 22-59 (279)
319 PLN02891 IMP cyclohydrolase 46.8 2E+02 0.0043 28.7 10.1 131 103-249 24-179 (547)
320 cd05564 PTS_IIB_chitobiose_lic 46.8 1.2E+02 0.0026 22.5 7.7 63 63-137 17-80 (96)
321 cd03145 GAT1_cyanophycinase Ty 46.7 53 0.0012 28.4 5.8 71 49-123 28-103 (217)
322 cd06308 PBP1_sensor_kinase_lik 46.3 64 0.0014 28.0 6.4 71 64-136 143-217 (270)
323 PRK13143 hisH imidazole glycer 46.3 1.1E+02 0.0024 25.9 7.6 78 51-144 1-86 (200)
324 cd06451 AGAT_like Alanine-glyo 45.9 61 0.0013 29.7 6.4 62 48-111 72-133 (356)
325 PRK00170 azoreductase; Reviewe 45.9 29 0.00063 29.2 4.0 56 193-248 25-113 (201)
326 cd06350 PBP1_GPCR_family_C_lik 45.8 2E+02 0.0043 26.0 9.8 89 162-252 146-242 (348)
327 TIGR01754 flav_RNR ribonucleot 45.7 59 0.0013 25.7 5.5 34 100-136 48-89 (140)
328 PRK14183 bifunctional 5,10-met 45.3 2.1E+02 0.0046 26.0 9.5 150 64-239 51-211 (281)
329 cd06298 PBP1_CcpA_like Ligand- 45.2 2E+02 0.0043 24.6 12.3 62 138-208 21-85 (268)
330 cd03820 GT1_amsD_like This fam 45.2 1.3E+02 0.0028 26.3 8.2 123 164-298 193-320 (348)
331 PF00072 Response_reg: Respons 45.2 1.2E+02 0.0025 22.0 7.1 103 53-172 2-112 (112)
332 PF02547 Queuosine_synth: Queu 45.0 1.1E+02 0.0023 28.8 7.7 87 178-271 173-264 (341)
333 PRK00147 queA S-adenosylmethio 45.0 1.4E+02 0.0031 27.9 8.5 87 178-271 173-264 (342)
334 PRK12742 oxidoreductase; Provi 44.9 1.3E+02 0.0028 25.5 8.0 32 47-78 3-35 (237)
335 PRK14187 bifunctional 5,10-met 44.8 1.6E+02 0.0035 26.9 8.7 151 64-238 52-213 (294)
336 KOG2914 Predicted haloacid-hal 44.6 1.1E+02 0.0025 26.7 7.4 163 103-280 17-197 (222)
337 cd06310 PBP1_ABC_sugar_binding 44.4 1.1E+02 0.0024 26.4 7.6 73 63-137 143-219 (273)
338 PLN02616 tetrahydrofolate dehy 44.3 1.4E+02 0.003 28.3 8.3 69 162-238 213-284 (364)
339 PRK03659 glutathione-regulated 44.3 2.8E+02 0.0061 28.0 11.3 100 179-280 401-518 (601)
340 cd06314 PBP1_tmGBP Periplasmic 44.2 98 0.0021 26.9 7.2 71 64-138 141-216 (271)
341 TIGR01283 nifE nitrogenase mol 44.2 3.1E+02 0.0067 26.6 19.6 216 60-295 210-441 (456)
342 TIGR01282 nifD nitrogenase mol 44.1 3.2E+02 0.0069 26.7 17.7 213 60-294 220-450 (466)
343 PRK11249 katE hydroperoxidase 43.8 2.8E+02 0.0061 29.0 11.1 123 176-300 595-740 (752)
344 PRK01355 azoreductase; Reviewe 43.7 52 0.0011 27.9 5.2 56 192-247 25-103 (199)
345 PRK00258 aroE shikimate 5-dehy 43.6 2.1E+02 0.0046 25.5 9.4 152 64-241 23-198 (278)
346 PRK13479 2-aminoethylphosphona 43.6 76 0.0016 29.3 6.7 63 49-112 79-141 (368)
347 PF13377 Peripla_BP_3: Peripla 43.6 1.1E+02 0.0023 24.1 6.8 74 63-137 29-106 (160)
348 COG1609 PurR Transcriptional r 43.5 2.7E+02 0.0058 25.7 13.8 63 137-208 79-144 (333)
349 COG0436 Aspartate/tyrosine/aro 43.5 43 0.00093 31.9 5.0 60 49-112 112-173 (393)
350 PF02350 Epimerase_2: UDP-N-ac 43.4 2.8E+02 0.006 25.8 11.4 215 51-297 68-318 (346)
351 PRK08594 enoyl-(acyl carrier p 43.3 2.2E+02 0.0049 24.7 9.6 73 47-123 4-83 (257)
352 TIGR03675 arCOG00543 arCOG0054 43.2 2.3E+02 0.0051 28.9 10.4 98 103-203 494-617 (630)
353 PRK08105 flavodoxin; Provision 43.2 81 0.0018 25.5 6.0 64 63-137 20-93 (149)
354 PRK00025 lpxB lipid-A-disaccha 42.9 2.7E+02 0.0059 25.6 15.8 102 179-298 221-342 (380)
355 PRK07060 short chain dehydroge 42.8 1.4E+02 0.0031 25.3 8.0 33 46-78 5-38 (245)
356 cd06353 PBP1_BmpA_Med_like Per 42.7 2.4E+02 0.0051 24.9 14.2 134 101-249 56-198 (258)
357 cd00640 Trp-synth-beta_II Tryp 42.7 2.2E+02 0.0049 24.6 10.9 40 222-262 145-188 (244)
358 COG0715 TauA ABC-type nitrate/ 42.7 67 0.0015 29.2 6.1 63 46-113 132-195 (335)
359 cd06313 PBP1_ABC_sugar_binding 42.6 1.9E+02 0.0042 25.2 8.9 47 92-138 173-219 (272)
360 PLN02409 serine--glyoxylate am 42.5 1.7E+02 0.0037 27.7 9.0 32 177-208 83-114 (401)
361 PRK07206 hypothetical protein; 42.3 2.7E+02 0.0059 26.2 10.4 30 179-208 3-32 (416)
362 TIGR01327 PGDH D-3-phosphoglyc 42.3 2.5E+02 0.0055 27.8 10.4 165 52-239 1-204 (525)
363 COG4747 ACT domain-containing 42.2 1.7E+02 0.0037 23.1 7.5 41 52-96 46-86 (142)
364 PRK12779 putative bifunctional 42.2 4.7E+02 0.01 28.2 16.0 35 177-213 446-480 (944)
365 PF12261 T_hemolysin: Thermost 42.1 40 0.00087 28.5 4.1 37 100-142 114-150 (179)
366 TIGR01729 taurine_ABC_bnd taur 42.0 83 0.0018 28.2 6.5 63 46-113 96-158 (300)
367 TIGR02667 moaB_proteo molybden 41.8 1.1E+02 0.0024 25.2 6.7 49 62-114 24-75 (163)
368 cd03812 GT1_CapH_like This fam 41.7 96 0.0021 27.9 7.0 105 179-299 224-333 (358)
369 PRK12748 3-ketoacyl-(acyl-carr 41.6 1.3E+02 0.0029 26.0 7.6 33 47-79 2-37 (256)
370 PRK11921 metallo-beta-lactamas 41.5 57 0.0012 31.0 5.5 38 99-136 297-341 (394)
371 PLN02253 xanthoxin dehydrogena 41.4 1.5E+02 0.0033 26.0 8.1 74 46-123 14-90 (280)
372 PF02882 THF_DHG_CYH_C: Tetrah 41.3 99 0.0021 25.5 6.2 69 162-238 18-89 (160)
373 cd06288 PBP1_sucrose_transcrip 41.2 2E+02 0.0043 24.6 8.7 44 93-136 168-214 (269)
374 cd03786 GT1_UDP-GlcNAc_2-Epime 41.0 98 0.0021 28.3 7.0 178 103-298 142-338 (363)
375 PRK06550 fabG 3-ketoacyl-(acyl 41.0 1.6E+02 0.0034 24.9 7.9 33 47-79 2-35 (235)
376 PRK05234 mgsA methylglyoxal sy 41.0 73 0.0016 25.7 5.3 53 48-110 30-83 (142)
377 PRK05784 phosphoribosylamine-- 41.0 3.3E+02 0.0072 26.8 10.9 60 51-111 1-78 (486)
378 cd03145 GAT1_cyanophycinase Ty 40.9 1.3E+02 0.0028 25.9 7.3 66 177-244 28-99 (217)
379 PRK12831 putative oxidoreducta 40.9 1.5E+02 0.0033 28.8 8.5 34 177-212 280-313 (464)
380 cd04509 PBP1_ABC_transporter_G 40.7 2.3E+02 0.0051 24.2 10.9 147 102-259 67-224 (299)
381 cd01079 NAD_bind_m-THF_DH NAD 40.7 1.6E+02 0.0035 25.3 7.5 31 177-207 61-92 (197)
382 cd06323 PBP1_ribose_binding Pe 40.6 1.5E+02 0.0033 25.3 7.9 37 101-137 180-216 (268)
383 PRK06895 putative anthranilate 40.6 1.1E+02 0.0025 25.6 6.8 75 179-263 2-83 (190)
384 PRK06398 aldose dehydrogenase; 40.5 1.4E+02 0.0031 26.0 7.7 33 47-79 3-36 (258)
385 TIGR01752 flav_long flavodoxin 40.5 2E+02 0.0044 23.5 8.6 13 161-173 10-22 (167)
386 COG1066 Sms Predicted ATP-depe 40.5 1E+02 0.0022 29.7 6.9 98 165-267 108-223 (456)
387 PRK09288 purT phosphoribosylgl 40.4 2.7E+02 0.0058 26.0 10.0 31 178-208 12-42 (395)
388 PRK00676 hemA glutamyl-tRNA re 40.4 77 0.0017 29.6 6.0 57 177-235 173-233 (338)
389 cd03795 GT1_like_4 This family 40.4 1.6E+02 0.0034 26.4 8.2 124 163-298 205-333 (357)
390 PRK05565 fabG 3-ketoacyl-(acyl 40.3 1.4E+02 0.003 25.3 7.5 33 47-79 2-35 (247)
391 TIGR03427 ABC_peri_uca ABC tra 40.3 47 0.001 30.8 4.7 65 46-115 102-166 (328)
392 cd01575 PBP1_GntR Ligand-bindi 40.1 2E+02 0.0042 24.6 8.5 75 63-137 136-215 (268)
393 COG0027 PurT Formate-dependent 39.9 93 0.002 28.9 6.2 91 177-275 11-101 (394)
394 PRK14166 bifunctional 5,10-met 39.8 2.6E+02 0.0056 25.5 9.1 150 64-238 50-210 (282)
395 PLN03026 histidinol-phosphate 39.7 77 0.0017 29.7 6.2 61 49-113 126-186 (380)
396 PRK14194 bifunctional 5,10-met 39.7 2.9E+02 0.0063 25.4 9.6 150 64-239 53-213 (301)
397 PF05991 NYN_YacP: YacP-like N 39.6 74 0.0016 26.3 5.3 50 152-204 67-117 (166)
398 PRK15452 putative protease; Pr 39.5 3.7E+02 0.008 26.2 12.4 64 228-291 89-153 (443)
399 CHL00073 chlN photochlorophyll 39.5 1.2E+02 0.0026 29.7 7.4 97 47-155 311-412 (457)
400 TIGR02370 pyl_corrinoid methyl 39.4 2.4E+02 0.0051 23.9 10.1 89 51-145 85-184 (197)
401 PRK12359 flavodoxin FldB; Prov 39.3 1.4E+02 0.0031 24.8 7.0 37 99-135 42-86 (172)
402 cd06273 PBP1_GntR_like_1 This 39.2 1.1E+02 0.0023 26.4 6.7 73 63-135 137-214 (268)
403 PRK11480 tauA taurine transpor 39.1 78 0.0017 28.9 6.0 63 46-113 118-180 (320)
404 PRK03562 glutathione-regulated 39.1 4.3E+02 0.0093 26.8 11.7 98 179-277 401-516 (621)
405 cd06295 PBP1_CelR Ligand bindi 39.1 1.5E+02 0.0031 25.7 7.5 76 63-138 145-225 (275)
406 PF02606 LpxK: Tetraacyldisacc 39.1 70 0.0015 29.7 5.6 70 46-116 223-293 (326)
407 COG0655 WrbA Multimeric flavod 38.9 63 0.0014 27.6 5.0 27 220-246 67-100 (207)
408 PF01136 Peptidase_U32: Peptid 38.8 1.1E+02 0.0024 26.4 6.6 66 227-292 14-80 (233)
409 PLN02657 3,8-divinyl protochlo 38.8 3.4E+02 0.0074 25.6 12.2 34 46-79 56-90 (390)
410 cd06270 PBP1_GalS_like Ligand 38.7 2.5E+02 0.0055 24.1 14.0 61 138-207 21-84 (268)
411 PLN02605 monogalactosyldiacylg 38.7 3.3E+02 0.0071 25.3 16.0 169 101-297 149-347 (382)
412 cd00758 MoCF_BD MoCF_BD: molyb 38.7 63 0.0014 25.4 4.6 50 62-115 21-71 (133)
413 PRK06019 phosphoribosylaminoim 38.6 1.2E+02 0.0027 28.3 7.4 32 179-210 3-34 (372)
414 PF08759 DUF1792: Domain of un 38.5 1.5E+02 0.0033 26.0 7.1 99 105-205 93-194 (225)
415 PRK00676 hemA glutamyl-tRNA re 38.4 79 0.0017 29.6 5.8 63 46-109 170-233 (338)
416 PLN02461 Probable pyruvate kin 38.4 1.3E+02 0.0028 29.9 7.5 65 230-299 398-485 (511)
417 TIGR01278 DPOR_BchB light-inde 38.3 4E+02 0.0088 26.3 18.3 141 60-211 175-329 (511)
418 TIGR02026 BchE magnesium-proto 38.3 2.2E+02 0.0048 27.9 9.3 74 61-138 24-102 (497)
419 PRK13525 glutamine amidotransf 38.3 2E+02 0.0043 24.2 7.9 79 51-145 2-88 (189)
420 PRK09739 hypothetical protein; 38.2 46 0.001 28.2 4.0 57 191-247 24-105 (199)
421 COG0079 HisC Histidinol-phosph 38.2 85 0.0018 29.5 6.1 58 50-113 99-156 (356)
422 COG1165 MenD 2-succinyl-6-hydr 38.1 1E+02 0.0023 30.7 6.7 82 50-134 22-103 (566)
423 cd06371 PBP1_sensory_GC_DEF_li 38.1 3.4E+02 0.0073 25.3 11.6 84 164-251 120-217 (382)
424 PF02525 Flavodoxin_2: Flavodo 37.9 12 0.00026 31.7 0.3 56 191-247 22-104 (199)
425 PRK07206 hypothetical protein; 37.8 3.5E+02 0.0077 25.4 10.4 30 50-79 2-31 (416)
426 PRK14178 bifunctional 5,10-met 37.6 3.2E+02 0.0069 24.9 10.0 150 64-239 46-206 (279)
427 TIGR01182 eda Entner-Doudoroff 37.6 1.7E+02 0.0036 25.3 7.3 32 50-81 8-41 (204)
428 PF01993 MTD: methylene-5,6,7, 37.6 59 0.0013 28.9 4.4 49 102-159 59-115 (276)
429 COG1433 Uncharacterized conser 37.5 56 0.0012 25.7 4.0 33 259-292 73-105 (121)
430 PRK05611 rpmD 50S ribosomal pr 37.4 57 0.0012 22.1 3.5 36 260-295 15-54 (59)
431 PRK13556 azoreductase; Provisi 37.3 95 0.0021 26.4 5.9 58 192-249 25-117 (208)
432 cd03146 GAT1_Peptidase_E Type 37.3 2.5E+02 0.0055 24.0 8.5 78 164-249 17-100 (212)
433 PLN02672 methionine S-methyltr 37.2 4.4E+02 0.0096 28.9 11.7 73 176-250 776-861 (1082)
434 cd06301 PBP1_rhizopine_binding 37.1 84 0.0018 27.2 5.7 46 92-137 173-220 (272)
435 cd01543 PBP1_XylR Ligand-bindi 37.0 1.8E+02 0.0038 25.1 7.7 74 64-137 129-209 (265)
436 PF13685 Fe-ADH_2: Iron-contai 36.9 1.4E+02 0.0029 26.7 6.8 39 167-207 10-52 (250)
437 PF11360 DUF3110: Protein of u 36.8 93 0.002 22.9 4.8 55 50-111 23-77 (86)
438 PRK12359 flavodoxin FldB; Prov 36.8 2.5E+02 0.0054 23.4 9.3 95 105-205 4-116 (172)
439 cd01658 Ribosomal_L30 Ribosoma 36.7 45 0.00098 22.1 2.9 36 260-295 12-51 (54)
440 PRK02610 histidinol-phosphate 36.7 99 0.0021 28.8 6.3 62 49-112 114-178 (374)
441 TIGR00853 pts-lac PTS system, 36.7 1.8E+02 0.0038 21.6 9.2 76 50-137 3-84 (95)
442 PRK10310 PTS system galactitol 36.6 1.7E+02 0.0038 21.6 6.7 26 179-204 3-34 (94)
443 TIGR01308 rpmD_bact ribosomal 36.6 53 0.0012 21.9 3.2 35 261-295 13-51 (55)
444 PRK12767 carbamoyl phosphate s 36.6 1.8E+02 0.0038 26.4 7.9 29 50-79 1-31 (326)
445 PF02887 PK_C: Pyruvate kinase 36.6 93 0.002 23.8 5.2 64 231-299 20-88 (117)
446 KOG0333 U5 snRNP-like RNA heli 36.5 2.3E+02 0.0051 28.3 8.7 79 155-237 496-576 (673)
447 COG0224 AtpG F0F1-type ATP syn 36.5 2E+02 0.0044 26.2 7.9 68 227-294 71-153 (287)
448 PRK06395 phosphoribosylamine-- 36.5 1.6E+02 0.0034 28.5 7.8 60 50-110 2-73 (435)
449 PRK15427 colanic acid biosynth 36.5 2.2E+02 0.0047 27.0 8.7 122 164-296 237-369 (406)
450 TIGR01279 DPOR_bchN light-inde 36.4 2.5E+02 0.0054 26.8 9.1 126 63-207 168-303 (407)
451 PRK14177 bifunctional 5,10-met 36.3 3.4E+02 0.0073 24.8 9.5 150 64-238 53-212 (284)
452 PF04392 ABC_sub_bind: ABC tra 36.3 1E+02 0.0022 27.7 6.2 59 190-249 17-80 (294)
453 TIGR02918 accessory Sec system 36.2 4.3E+02 0.0094 26.0 10.9 186 97-295 265-465 (500)
454 cd06533 Glyco_transf_WecG_TagA 36.2 2.5E+02 0.0054 23.2 9.1 118 131-262 7-133 (171)
455 COG2247 LytB Putative cell wal 36.1 1.6E+02 0.0035 27.3 7.2 54 152-207 52-106 (337)
456 PRK06719 precorrin-2 dehydroge 36.1 56 0.0012 26.7 4.0 31 177-207 12-42 (157)
457 TIGR02144 LysX_arch Lysine bio 36.1 2E+02 0.0043 25.4 8.0 52 53-110 3-55 (280)
458 PRK13581 D-3-phosphoglycerate 36.0 3.5E+02 0.0076 26.8 10.3 166 51-239 1-205 (526)
459 PRK04870 histidinol-phosphate 36.0 97 0.0021 28.5 6.1 61 49-113 104-164 (356)
460 PRK05749 3-deoxy-D-manno-octul 35.9 3.8E+02 0.0082 25.2 18.3 17 282-298 373-389 (425)
461 PRK11634 ATP-dependent RNA hel 35.9 4.6E+02 0.0099 26.7 11.3 41 164-205 233-273 (629)
462 PRK00994 F420-dependent methyl 35.8 96 0.0021 27.5 5.4 49 228-282 60-119 (277)
463 cd00853 NifX NifX belongs to a 35.8 57 0.0012 24.3 3.8 33 259-291 69-101 (102)
464 PRK00170 azoreductase; Reviewe 35.8 67 0.0015 26.9 4.6 17 95-111 79-95 (201)
465 cd06367 PBP1_iGluR_NMDA N-term 35.7 2.7E+02 0.0058 25.5 9.1 20 107-126 200-219 (362)
466 PRK05723 flavodoxin; Provision 35.7 1.9E+02 0.0042 23.4 7.1 64 62-136 18-92 (151)
467 cd06451 AGAT_like Alanine-glyo 35.7 3.1E+02 0.0068 24.9 9.5 14 195-208 91-104 (356)
468 TIGR00537 hemK_rel_arch HemK-r 35.7 96 0.0021 25.5 5.5 47 166-212 121-168 (179)
469 cd06334 PBP1_ABC_ligand_bindin 35.5 3.4E+02 0.0075 24.9 9.7 97 48-152 138-240 (351)
470 TIGR02990 ectoine_eutA ectoine 35.3 1.9E+02 0.0042 25.5 7.5 71 227-299 70-145 (239)
471 PRK08594 enoyl-(acyl carrier p 35.2 2.1E+02 0.0045 25.0 7.9 26 179-204 8-36 (257)
472 cd06284 PBP1_LacI_like_6 Ligan 35.2 1.9E+02 0.0042 24.6 7.7 74 64-137 136-214 (267)
473 COG0431 Predicted flavoprotein 35.1 1.3E+02 0.0029 25.1 6.3 83 179-261 1-107 (184)
474 TIGR01282 nifD nitrogenase mol 35.1 2.7E+02 0.0058 27.2 9.2 96 46-156 331-426 (466)
475 TIGR00507 aroE shikimate 5-deh 35.1 3.2E+02 0.007 24.2 9.9 116 65-204 19-143 (270)
476 PRK04017 hypothetical protein; 35.0 2.4E+02 0.0051 22.6 7.7 81 115-204 10-96 (132)
477 PLN02948 phosphoribosylaminoim 35.0 2.1E+02 0.0047 28.8 8.7 33 177-209 21-53 (577)
478 PF02670 DXP_reductoisom: 1-de 35.0 41 0.00089 26.8 2.9 61 133-202 9-71 (129)
479 PRK10653 D-ribose transporter 34.7 1.2E+02 0.0026 26.9 6.3 35 102-136 207-241 (295)
480 PF02601 Exonuc_VII_L: Exonucl 34.7 91 0.002 28.5 5.6 83 130-217 16-118 (319)
481 PRK09267 flavodoxin FldA; Vali 34.7 99 0.0021 25.2 5.4 37 99-135 43-87 (169)
482 PLN02306 hydroxypyruvate reduc 34.7 4.1E+02 0.0089 25.3 13.2 148 47-210 12-198 (386)
483 PLN02762 pyruvate kinase compl 34.7 1.5E+02 0.0032 29.4 7.2 64 231-299 413-480 (509)
484 PF01936 NYN: NYN domain; Int 34.5 46 0.001 26.0 3.3 80 62-145 49-138 (146)
485 PRK07856 short chain dehydroge 34.3 2.1E+02 0.0045 24.6 7.7 34 46-79 2-36 (252)
486 PRK06463 fabG 3-ketoacyl-(acyl 34.2 2.2E+02 0.0048 24.5 7.8 70 46-123 3-75 (255)
487 PF00532 Peripla_BP_1: Peripla 34.2 3.4E+02 0.0073 24.1 12.8 139 137-298 22-178 (279)
488 PLN02778 3,5-epimerase/4-reduc 34.1 1.6E+02 0.0034 26.6 7.1 57 49-110 8-65 (298)
489 TIGR02069 cyanophycinase cyano 34.1 1.9E+02 0.0041 25.7 7.4 77 165-243 14-97 (250)
490 PRK15481 transcriptional regul 34.0 1.2E+02 0.0025 29.0 6.5 55 49-109 164-218 (431)
491 PTZ00066 pyruvate kinase; Prov 33.9 1.6E+02 0.0034 29.3 7.3 65 230-299 414-482 (513)
492 PRK13566 anthranilate synthase 33.9 2.4E+02 0.0051 29.4 8.9 93 46-157 522-621 (720)
493 cd01977 Nitrogenase_VFe_alpha 33.8 4.3E+02 0.0092 25.2 20.5 139 60-210 175-321 (415)
494 PRK05647 purN phosphoribosylgl 33.8 2.8E+02 0.006 23.7 8.1 47 231-277 4-56 (200)
495 COG0436 Aspartate/tyrosine/aro 33.8 2.4E+02 0.0051 26.8 8.4 88 161-250 96-195 (393)
496 cd06271 PBP1_AglR_RafR_like Li 33.7 2E+02 0.0043 24.5 7.5 75 63-137 140-219 (268)
497 PF01276 OKR_DC_1: Orn/Lys/Arg 33.7 62 0.0014 31.2 4.4 64 47-112 103-178 (417)
498 COG3473 Maleate cis-trans isom 33.6 3.3E+02 0.0071 23.8 10.1 110 163-275 105-226 (238)
499 PF02502 LacAB_rpiB: Ribose/Ga 33.6 2.5E+02 0.0055 22.6 9.6 102 190-295 14-122 (140)
500 cd05212 NAD_bind_m-THF_DH_Cycl 33.6 1.5E+02 0.0033 23.8 6.1 90 162-264 10-103 (140)
No 1
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=3.6e-45 Score=327.29 Aligned_cols=242 Identities=19% Similarity=0.161 Sum_probs=212.0
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC-
Q 022176 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT- 126 (301)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~- 126 (301)
+.|++||||||.+++.++++.|+++|++++.+|+++++|.++...+...+.+++.||||||||+|||++|++.+.+.+.
T Consensus 1 ~~g~~vlvTRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~~ 80 (255)
T PRK05752 1 MSGWRLLLTRPAEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWPQ 80 (255)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCCC
Confidence 4689999999999999999999999999999999999998877677777778899999999999999999998876553
Q ss_pred -CCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHH--hccC-CCCCCEEEEEcCCcChhHHHHHHHhCCC
Q 022176 127 -PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE--LPKN-GKKKCTVLYPASAKASNEIEEGLSNRGF 202 (301)
Q Consensus 127 -~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~--l~~~-~~~~~~vLi~rg~~~~~~L~~~L~~~G~ 202 (301)
.+.+++|||++|+++|+++ |+.++++|..+++++|++. +... ...+++||++||+.+++.|.+.|++.|+
T Consensus 81 ~~~~~~~aVG~~Ta~al~~~------G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~ 154 (255)
T PRK05752 81 PPQQPWFSVGAATAAILQDY------GLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGA 154 (255)
T ss_pred CcCCEEEEECHHHHHHHHHc------CCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCC
Confidence 3689999999999999999 9999988899999999876 4332 1357899999999999999999999999
Q ss_pred eeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHhhhccc--CCCceEEEECHHHHHHHHHcCCCeeEe
Q 022176 203 EVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKNVYY 278 (301)
Q Consensus 203 ~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~~~--~~~~~i~aIG~~Ta~al~~~G~~~~~v 278 (301)
+|.++++|++++.......+.+.+ +.+|+|+|||++++++|++.+.... ..+++++|||++|+++++++|+.++++
T Consensus 155 ~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ta~a~~~~G~~~~~~ 234 (255)
T PRK05752 155 SVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSGQGFEHLQQLAGADWPELARLPLFVPSPRVAEQARAAGAQTVVD 234 (255)
T ss_pred EEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECCHHHHHHHHHHhChhHHHhcCceEEEeCHHHHHHHHHcCCCceee
Confidence 999999999987665544444332 5799999999999999999886432 236789999999999999999999889
Q ss_pred cCCCCHHHHHHHHHHHH
Q 022176 279 PTHPGLEGWVDSILEAL 295 (301)
Q Consensus 279 ~~~ps~e~ll~ai~~~~ 295 (301)
++.++.++|+++|.++.
T Consensus 235 a~~~t~~~L~~al~~~~ 251 (255)
T PRK05752 235 CRGASAAALLAALRRQA 251 (255)
T ss_pred CCCCChHHHHHHHHhcc
Confidence 99999999999998754
No 2
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=3.6e-45 Score=328.37 Aligned_cols=250 Identities=17% Similarity=0.165 Sum_probs=215.3
Q ss_pred ccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHH
Q 022176 43 SASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (301)
Q Consensus 43 ~~~~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~ 122 (301)
.+..++.|++||||||.++++.+++.|++.|++++.+|++++++..+ ..+...+.++..||||||||+|||++|+..+.
T Consensus 11 ~~~~~l~g~~IlvTRp~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~-~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~~ 89 (266)
T PRK08811 11 GAATADAAWTLISLRPSGEHAPLRRAVARHGGRLLALSPWRLQRLDT-AQARDALRQALAAPIVVFTSPAAVRAAHRLLP 89 (266)
T ss_pred CCCcCCCCCEEEEeCCHHHHHHHHHHHHHCCCcEEEcCceeecCCCc-hhHHHHHhhcccCCEEEEECHHHHHHHHHHhc
Confidence 34578999999999999999999999999999999999999998765 44556677788999999999999999986543
Q ss_pred HcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCC
Q 022176 123 EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGF 202 (301)
Q Consensus 123 ~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~ 202 (301)
.....+.+++|||++|+++|+++ |+.++++|+.+++|+|++.. .....+++||++||..+++.|.+.|+++|+
T Consensus 90 ~~~~~~~~~~AVG~~TA~aL~~~------G~~~~~~P~~~~se~Ll~l~-~~~~~g~~vLi~rg~~gr~~L~~~L~~~G~ 162 (266)
T PRK08811 90 LQRPARAHWLSVGEGTARALQAC------GIDEVVRPTRMDSEGLLALP-LAQAPLQAVGLITAPGGRGLLAPTLQQRGA 162 (266)
T ss_pred ccCccCCeEEEECHHHHHHHHHc------CCCceeCCCCCCcHHHHhCh-hhhCCCCEEEEEeCCCcHHHHHHHHHHCCC
Confidence 33456899999999999999999 99999999999999998862 222267899999999999999999999999
Q ss_pred eeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEEChHHHHHHHHhhhccc---CCCceEEEECHHHHHHHHHcCCCeeE
Q 022176 203 EVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNVY 277 (301)
Q Consensus 203 ~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~sav~~~~~~l~~~~---~~~~~i~aIG~~Ta~al~~~G~~~~~ 277 (301)
.|.++++|++++.....+..... ...+|+++|||++++++|++.+.... ..++.++|||++|+++++++|++.++
T Consensus 163 ~V~~~~vY~~~~~~~~~~~~~~l~~~~~~d~i~ftS~sav~~f~~~l~~~~~~~l~~~~~v~is~rtA~~a~~~G~~~v~ 242 (266)
T PRK08811 163 RILRADVYQRVPLRLRASTLAALSRAAPRSVLALSSAEALTLILQQLPDALRRALQQRPVVASSDRLLDAAHAAGFIHVM 242 (266)
T ss_pred EEeEEEEEeeeCCCCCHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhhhHHHHHhCCCEEEeCHHHHHHHHHcCCCcee
Confidence 99999999998776544322111 25789999999999999999886532 23678999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHHccCC
Q 022176 278 YPTHPGLEGWVDSILEALREHGH 300 (301)
Q Consensus 278 v~~~ps~e~ll~ai~~~~~~~~~ 300 (301)
+++.|+.++|++++.+....++|
T Consensus 243 vA~~~~~~~l~~a~~~~~~~~~~ 265 (266)
T PRK08811 243 RAAGPLPAQLAAAAAAIMTPPRP 265 (266)
T ss_pred eCCCCCHHHHHHHHHhhcCCCCC
Confidence 99999999999999998886665
No 3
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=100.00 E-value=4.3e-42 Score=324.20 Aligned_cols=246 Identities=20% Similarity=0.214 Sum_probs=211.3
Q ss_pred cCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHH
Q 022176 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAW 121 (301)
Q Consensus 44 ~~~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l--~~~d~IiftS~~av~~f~~~l 121 (301)
..+||.|++|+|||+. ++..+++.|+++|++++.+|+++++|.++...++..+.++ +.||||||||+|||++|++.+
T Consensus 5 ~~~pL~g~rIlvtr~~-~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv~~~~~~l 83 (381)
T PRK07239 5 DSAPLAGFTVGVTAAR-RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGFRGWVEAA 83 (381)
T ss_pred CCCCCCCcEEEEeccC-CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHHHHHHHHH
Confidence 3489999999999976 8999999999999999999999999987666666666555 689999999999999999988
Q ss_pred HHcCC--------CCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCC-----c
Q 022176 122 KEAGT--------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA-----K 188 (301)
Q Consensus 122 ~~~~~--------~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~-----~ 188 (301)
.+.+. .+.+++|||++|+++|+++ |+.++++|..+++++|++.+......+++|+++++. .
T Consensus 84 ~~~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~~~~p~~~~~e~L~~~l~~~~~~g~~vli~~~~~~~~~~ 157 (381)
T PRK07239 84 DGWGLADELLEALSSARLLARGPKATGAIRAA------GLREEWSPASESSAEVLEYLLEEGVAGKRIAVQLHGATDEWE 157 (381)
T ss_pred HHcCChHHHHHHHcCCeEEEECccHHHHHHHc------CCCCccCCCCCccHHHHHHHhcCCCCCCEEEEEcCCCccccC
Confidence 76553 4889999999999999999 999999999999999999988765578999998876 4
Q ss_pred ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCc--HHHHHHc--CCCCEEEEEChHHHHHHHHhhhccc---------CCCc
Q 022176 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE---------QWSN 255 (301)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~--~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~~~---------~~~~ 255 (301)
.++.|.+.|++.|++|.++++|++++..... ..+...+ +.+|+|+|||+++|++|++.+...+ ..++
T Consensus 158 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l~~~~~d~v~FtS~stv~~f~~~l~~~~~~~~~~~~~~~~~ 237 (381)
T PRK07239 158 PLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAIASRGLDAVTFTSAPAVAALLERAREMGLLDQLLAALRTDV 237 (381)
T ss_pred chHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHHHcCCccEEEEcCHHHHHHHHHHHHHcCChHHHHHhhccCC
Confidence 4578999999999999999999998764432 2333333 4799999999999999999986532 1357
Q ss_pred eEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 256 SVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 256 ~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
.++||||.|+++|+++|+++ .+|+.|+.++|+++|.+++.-
T Consensus 238 ~i~aIGp~Ta~al~~~G~~~-~vp~~~t~~~Lv~~i~~~~~~ 278 (381)
T PRK07239 238 LAACVGPVTAAPLVRAGVPT-SAPERMRLGALARHITEELPL 278 (381)
T ss_pred EEEEECHHHHHHHHHcCCCc-cCCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999999998 579999999999999987754
No 4
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=100.00 E-value=5.9e-42 Score=305.25 Aligned_cols=239 Identities=34% Similarity=0.452 Sum_probs=216.4
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC--
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-- 127 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~-- 127 (301)
||+|+||||.+++++++..|++.|++++.+|++++++..+ ++..+..+..||||+|||+|||+.|++.+...+.+
T Consensus 1 ~~~vlvtR~~~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~---l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~ 77 (248)
T COG1587 1 GMRVLVTRPREQAEELAALLRKAGAEPLELPLIEIEPLPD---LEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDAL 77 (248)
T ss_pred CcEEEEeCchhhhHHHHHHHHhCCCcceeecceeeecchh---HHHHHhccccCCEEEEECHHHHHHHHHHHHhhccccc
Confidence 7899999999999999999999999999999999999765 66677777789999999999999999999877643
Q ss_pred -CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEE
Q 022176 128 -NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (301)
Q Consensus 128 -~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~ 206 (301)
+.+++|||++|++.|+++ |+.++++|+.+++++|+..+......+++|+++||+.+++.|.+.|.+.|++|.+
T Consensus 78 ~~~~i~aVG~~Ta~~l~~~------G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~ 151 (248)
T COG1587 78 KNKKIAAVGEKTAEALRKL------GIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVRE 151 (248)
T ss_pred ccCeEEEEcHHHHHHHHHh------CCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEE
Confidence 899999999999999999 9999999999999999999998765578999999999999999999999999999
Q ss_pred EeeeeeeeCCCCcHHHHH--HcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeeEecCC
Q 022176 207 LNTYTTEPVHHVDQTVLK--QALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTH 281 (301)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~--~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ 281 (301)
+++|++++.....+.+.. ....+|+|+|||++++++|++.++.... .+++++|||+.|++.++++|+++++.++.
T Consensus 152 ~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~~~~~~v~~IG~~Ta~~l~~~G~~~~~~~~~ 231 (248)
T COG1587 152 VEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSAVRALLALAPESGIEFLERKRVASIGPRTAETLKELGITVDIAAEK 231 (248)
T ss_pred EeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHHHHHHHHHccccchhHhhCceEEEecHHHHHHHHHcCCcceecccc
Confidence 999999998887433222 2479999999999999999999987642 36899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 022176 282 PGLEGWVDSILEALRE 297 (301)
Q Consensus 282 ps~e~ll~ai~~~~~~ 297 (301)
++.++|.+++..+.+.
T Consensus 232 ~~~~~l~~al~~~~~~ 247 (248)
T COG1587 232 PTLEALADALAKLLRE 247 (248)
T ss_pred cchHHHHHHHHHHhhc
Confidence 9999999999987653
No 5
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=3.1e-41 Score=299.47 Aligned_cols=239 Identities=28% Similarity=0.354 Sum_probs=209.7
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc---CC
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA---GT 126 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~---~~ 126 (301)
+|+||+|||..+++.+.+.|+++|++++.+|++++++.++... ...+..+..||+|||||++||++|++.+.+. .+
T Consensus 1 ~~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~-~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~ 79 (249)
T PRK05928 1 MMKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQ-LAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWP 79 (249)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcCh-HHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCC
Confidence 4899999999999999999999999999999999999875433 3444567899999999999999999988632 24
Q ss_pred CCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEE
Q 022176 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (301)
Q Consensus 127 ~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~ 206 (301)
.+.+++|||++|+++|+++ |+.++++|+.++.+++++.|.+....+++||++|+..+++.|.+.|++.|+.|.+
T Consensus 80 ~~~~~~avG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~ 153 (249)
T PRK05928 80 KNKKYAAIGEKTALALKKL------GGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVDE 153 (249)
T ss_pred CCCEEEEECHHHHHHHHHc------CCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeE
Confidence 5899999999999999999 9999999999999999999987644689999999999999999999999999999
Q ss_pred EeeeeeeeCCCCcHHHHHH--cCCCCEEEEEChHHHHHHHHhhhccc----CCCceEEEECHHHHHHHHHcCCCeeEecC
Q 022176 207 LNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVNLISDTE----QWSNSVACIGETTASAAKRLGLKNVYYPT 280 (301)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~sav~~~~~~l~~~~----~~~~~i~aIG~~Ta~al~~~G~~~~~v~~ 280 (301)
+++|++++........... .+.+|+|+|||+++|+.|++.+...+ ..+++++|||++|+++++++|+.++++|+
T Consensus 154 ~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~~v~~~~~~~~~~~~~~~~~~~~~~aiG~~Ta~~l~~~G~~~~~~~~ 233 (249)
T PRK05928 154 CEVYERVPPKLDGAELLARLQSGEVDAVIFTSPSTVRAFFSLAPELGRREWLLSCKAVVIGERTAEALRELGIKVIIVPD 233 (249)
T ss_pred EEEEEeeCCCCChHHHHHHHHhCCCCEEEECCHHHHHHHHHHhcccchhHHHhCCeEEEeCHHHHHHHHHcCCCcceecC
Confidence 9999998876544333322 26899999999999999999987643 12788999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 022176 281 HPGLEGWVDSILEAL 295 (301)
Q Consensus 281 ~ps~e~ll~ai~~~~ 295 (301)
+++.++|+++|.+++
T Consensus 234 ~~~~~~l~~~l~~~~ 248 (249)
T PRK05928 234 SADNEALLRALKELL 248 (249)
T ss_pred CCChHHHHHHHHHhc
Confidence 999999999998875
No 6
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=2.9e-41 Score=299.52 Aligned_cols=232 Identities=18% Similarity=0.143 Sum_probs=194.6
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCc
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNV 129 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-~~~~~ 129 (301)
|+||||||.+++..+++.|+++|++++.+|++++++.++ .....+ .+.||||||||+|||++|.+...+. .+.+.
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~--~~~~~l--~~~~d~iifTS~naV~~~~~~~~~~~~~~~~ 76 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVA--AAFTAL--SEPHGAIAVTSAEAVRHLAALGERLLPHLAL 76 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChh--hhhhhh--cCCcCEEEEECHHHHHHHHhcchhhHHhcCC
Confidence 689999999999999999999999999999999998653 111222 2468999999999999987643221 13478
Q ss_pred eEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEee
Q 022176 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (301)
Q Consensus 130 ~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (301)
+++|||++|+++|+++ |+.. ++|..+++++|++.+......+++||++||+.+++.|.+.|++.|+.|.++++
T Consensus 77 ~~~aVG~~Ta~~l~~~------G~~~-~~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~v 149 (240)
T PRK09189 77 PLFAVGEATAEAAREL------GFRH-VIEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAEC 149 (240)
T ss_pred eEEEEcHHHHHHHHHc------CCCC-CcCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEE
Confidence 9999999999999999 9985 56778999999998876544678999999999999999999999999999999
Q ss_pred eeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHhhhccc--C--CCceEEEECHHHHHHHHHcCCCeeEecCCCC
Q 022176 210 YTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE--Q--WSNSVACIGETTASAAKRLGLKNVYYPTHPG 283 (301)
Q Consensus 210 Y~~~~~~~~~~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~~~--~--~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps 283 (301)
|++++.+.....+.+.+ +++|+|+|||++++++|++.+.... . .+++++|||++|++++++.|+..+++++.|+
T Consensus 150 Y~~~~~~~~~~~~~~~l~~~~~d~i~f~S~~~~~~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~~~~~~~~~ia~~~t 229 (240)
T PRK09189 150 YDMLPVMYSPATLSAILGGAPFDAVLLYSRVAARRFFALMRLSIAPPADEKTRFLCLSARVAAALPASLRAQALIAAMPD 229 (240)
T ss_pred EEeecCCCChHHHHHHHhcCCCCEEEEeCHHHHHHHHHHHhhhcCcccccccCeEEeCHHHHHHHhhccccceeecCCCC
Confidence 99998776655444433 5799999999999999999986432 2 2678999999999999998877777899999
Q ss_pred HHHHHHHHHH
Q 022176 284 LEGWVDSILE 293 (301)
Q Consensus 284 ~e~ll~ai~~ 293 (301)
.++|+++|.+
T Consensus 230 ~~~l~~~l~~ 239 (240)
T PRK09189 230 EKSLLSLLSK 239 (240)
T ss_pred HHHHHHHhhh
Confidence 9999998864
No 7
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=100.00 E-value=1.9e-39 Score=285.69 Aligned_cols=219 Identities=30% Similarity=0.430 Sum_probs=189.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCC--CccEEEEeChHHHHHHHHHHHHcC-----CCCceEEEEc
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIIITSPEAGSVFLEAWKEAG-----TPNVRIGVVG 135 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~--~~d~IiftS~~av~~f~~~l~~~~-----~~~~~i~avG 135 (301)
++++++|+++|++++.+|++++++..+...+...++.+. .||||||||+|||++|++.+...+ +.+.+++|||
T Consensus 1 ~~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG 80 (231)
T PF02602_consen 1 SELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVG 80 (231)
T ss_dssp -HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESS
T ss_pred CHHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEc
Confidence 478999999999999999999999777677777776666 999999999999999999887332 3489999999
Q ss_pred hhhHHHHHHHhhcccCCCceeecCC-CCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 136 AGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~-~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
++|+++|+++ |+.++++|. .+++++|++.|.... .+++|||+||+.++++|.+.|++.|++|.++++|++ +
T Consensus 81 ~~Ta~~l~~~------G~~~~~~~~~~~~s~~L~~~l~~~~-~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~-~ 152 (231)
T PF02602_consen 81 PKTAEALREY------GFQPDFVPSSEGSSEGLAELLKEQL-RGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYET-P 152 (231)
T ss_dssp HHHHHHHHHT------T-EECEE-TTSSSHHHHHGGHHHCC-TTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEE-E
T ss_pred HHHHHHHHHc------CCCccccCCCCCCHHHHHHHHHhhC-CCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeec-c
Confidence 9999999999 999998888 899999999888754 458999999999999999999999999999999999 4
Q ss_pred CCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHhhhcc--cCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHH
Q 022176 215 VHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVD 289 (301)
Q Consensus 215 ~~~~~~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~~--~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ 289 (301)
......++.+.+ +.+|+|+|||+++++.|++.+++. ...+..++|||++|+++++++|+++++++++|+.++|++
T Consensus 153 ~~~~~~~~~~~l~~~~~~~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ta~~l~~~g~~~~~va~~~~~~~lv~ 231 (231)
T PF02602_consen 153 PEELSPELKEALDRGEIDAVVFTSPSAVRAFLELLKKNGALLKRVPIVAIGPRTAKALRELGFKVDIVAERPTIEALVE 231 (231)
T ss_dssp EHHHHHHHHHHHHHTTTSEEEESSHHHHHHHHHHSSGHHHHHTTSEEEESSHHHHHHHHHTT-SCSEEESSSSHHHHHH
T ss_pred cccchHHHHHHHHcCCCCEEEECCHHHHHHHHHHhHhhhhhhhCCEEEEECHHHHHHHHHcCCCceEECCCCChhHhhC
Confidence 444334444433 689999999999999999999864 245899999999999999999999999999999999986
No 8
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=2.8e-38 Score=314.63 Aligned_cols=242 Identities=21% Similarity=0.202 Sum_probs=207.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCC
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~ 128 (301)
.+|+||||||.+++.++++.|+++|++++.+|++++++.++...+...+.++..||||||||+|||++|++.+...+..+
T Consensus 2 ~~~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~~~ 81 (656)
T PRK06975 2 RAFTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWPHA 81 (656)
T ss_pred CCCEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCccC
Confidence 47999999999999999999999999999999999999887667778887889999999999999999999887655568
Q ss_pred ceEEEEchhhHHHHHHHhhcccCCCceeec------------CCCCcHHHHHHHhccCC--CCCCEEEEEcCCcChhHHH
Q 022176 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFS------------PSKATGKILASELPKNG--KKKCTVLYPASAKASNEIE 194 (301)
Q Consensus 129 ~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~------------p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~~~~~L~ 194 (301)
++++|||++|+++|+++ |+.++++ |..+++|+|++.+.... ..+++|||+||+++++.|.
T Consensus 82 ~~i~AVG~~Ta~aL~~~------Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~~~~~g~rVLi~rG~~gr~~L~ 155 (656)
T PRK06975 82 LPVAVVGPGSVAALARH------GIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAFGALAGKRVLIVRGDGGREWLA 155 (656)
T ss_pred CeEEEECHHHHHHHHHc------CCCCceeeccccccccCCCCCccchHHHHHhHHHhccCCCCCEEEEEcCCCCcHHHH
Confidence 99999999999999999 9998876 35689999999987654 4689999999999999999
Q ss_pred HHHHhCCCeeEEEeeeeeeeCCCCcH---HHHHHc-CCCCEEEEEChHHHHHHHHhhhcc----c---CCCceEEEECHH
Q 022176 195 EGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA-LSIPVVAVASPSAVRSWVNLISDT----E---QWSNSVACIGET 263 (301)
Q Consensus 195 ~~L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~~-~~~d~I~ftS~sav~~~~~~l~~~----~---~~~~~i~aIG~~ 263 (301)
+.|++.|+.|.++++|++..+..... .+.+.+ +.+|+|+|||++++++|++...++ . ..+++++|||++
T Consensus 156 ~~L~~~Ga~V~~v~vY~~~~~~~~~~~~~~~~~~l~~~idav~fTS~s~v~~f~~la~~~l~~~~~~~l~~~~ivaIgpr 235 (656)
T PRK06975 156 ERLREAGAEVELVEAYRRVVPEPSIGAWERVHALLSGAPHAWLLTSSEAVRNLDELARAHLNPAEIDALKHAPLVAPHAR 235 (656)
T ss_pred HHHHHCCCEEEEEeEEEeeCCCcchhHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhhcCHHHHHHHhCCeEEEeCHH
Confidence 99999999999999999864433222 122222 469999999999999999984321 1 236889999999
Q ss_pred HHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 264 TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 264 Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
|+++++++|+.+++ +..++.++++.++.++...
T Consensus 236 tA~~a~~~G~~~i~-~a~~~~e~ll~ai~~~~~~ 268 (656)
T PRK06975 236 IAEQARALGFDRIT-LTGAGDERIVRAFLTWADA 268 (656)
T ss_pred HHHHHHHcCCCeee-cCCCChHHHHHHHHHHhhc
Confidence 99999999999855 5678899999999988764
No 9
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=100.00 E-value=9.7e-38 Score=274.83 Aligned_cols=231 Identities=32% Similarity=0.459 Sum_probs=203.8
Q ss_pred EEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc---CCCCc
Q 022176 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA---GTPNV 129 (301)
Q Consensus 53 IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~---~~~~~ 129 (301)
||+|||....+.+.+.|+++|+++..+|++++++. +...+...+..+..+|+|||||+++|+.|++.+... .+.+.
T Consensus 1 iLi~r~~~~~~~l~~~L~~~G~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~iiftS~~av~~~~~~~~~~~~~~~~~~ 79 (239)
T cd06578 1 VLVTRPRPQADELAALLEALGAEVLELPLIEIEPL-DDAELDAALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGL 79 (239)
T ss_pred CEecCchHHhHHHHHHHHHcCCcEEEeeeEEEecC-ChHHHHHHHHhcCCCCEEEEECHHHHHHHHHHHHhhCCccccCC
Confidence 68999999999999999999999999999999987 545566666677799999999999999999988764 35799
Q ss_pred eEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEee
Q 022176 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (301)
Q Consensus 130 ~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (301)
+++|||++|+++|++. |+.+++.|+.+++++|++.+......+++|++++|+..++.|.+.|++.|++|.++++
T Consensus 80 ~~~avG~~Ta~~l~~~------g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~ 153 (239)
T cd06578 80 KIAAVGPKTAEALREA------GLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEV 153 (239)
T ss_pred EEEEECHHHHHHHHHc------CCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEE
Confidence 9999999999999999 9999988888999999999988644689999999999999999999999999999999
Q ss_pred eeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHhhhccc---CCCceEEEECHHHHHHHHHcCCCeeEecCCCCH
Q 022176 210 YTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNVYYPTHPGL 284 (301)
Q Consensus 210 Y~~~~~~~~~~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~~~---~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~ 284 (301)
|++++.+.. +.....+ ..+|+|+|||+++++.|++.+.+.+ ..+++++|||++|+++|++.|++++++++.++.
T Consensus 154 Y~~~~~~~~-~~~~~~l~~~~~~~iiftS~~~v~~f~~~~~~~~~~~~~~~~~~aig~~t~~~l~~~g~~~~~~~~~~~~ 232 (239)
T cd06578 154 YRTVPPDLD-AELLELLEEGAIDAVLFTSPSTVRNLLELLGKEGRALLKNVKIAAIGPRTAEALRELGLKVVIVAESPTL 232 (239)
T ss_pred EEEECCCCc-HHHHHHHHcCCCcEEEEeCHHHHHHHHHHHhhhhhhhhcCCeEEEECHHHHHHHHHcCCCceeeecCCCh
Confidence 999987654 2222222 4678999999999999999997642 348999999999999999999999999999999
Q ss_pred HHHHHHH
Q 022176 285 EGWVDSI 291 (301)
Q Consensus 285 e~ll~ai 291 (301)
++|+++|
T Consensus 233 ~~l~~~i 239 (239)
T cd06578 233 EALLEAL 239 (239)
T ss_pred HHHHhhC
Confidence 9999864
No 10
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=1.2e-33 Score=271.10 Aligned_cols=214 Identities=11% Similarity=0.113 Sum_probs=179.5
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccE
Q 022176 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDW 105 (301)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~ 105 (301)
+++|++++|++. +||.|++|||||+.+++..++..|+++|++++++|++++++.+.. +..+.++..|||
T Consensus 235 v~~~~~~~~~~~--------~PL~G~~IlVtR~~~q~~~l~~~L~~~GA~v~~~P~i~~~~~~~~---~~~l~~l~~ydw 303 (474)
T PRK07168 235 VSLRNQIAWKER--------KPLHGKKVLFTSATNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLT---LEQINEIFNVNR 303 (474)
T ss_pred hccccccchhhc--------ccccCceEEeeccHHHHHHHHHHHHHcCCEEEEeccEEeeCCCCc---HHHHHHhccCCE
Confidence 568889999999 999999999999999999999999999999999999998865432 345667889999
Q ss_pred EEEeChHHHHHHHHHHHHcCCC----CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEE
Q 022176 106 IIITSPEAGSVFLEAWKEAGTP----NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTV 181 (301)
Q Consensus 106 IiftS~~av~~f~~~l~~~~~~----~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~v 181 (301)
|||||+|+|++|++.+.+.++| ..+|+|||++|+++|+++ |+.++ |+.+++++++.. ... . +++
T Consensus 304 lvFTS~ngV~~Ff~~l~~~~~D~R~l~~kiaavG~~Ta~aL~~~------Gl~~d--p~~~~~e~~l~~-g~~--~-~~v 371 (474)
T PRK07168 304 LVFCSAESVEILMQSCSKYKKDIRSLQAELQHMNVATQEKLMQY------GLLSK--EAKFSSDTTVYL-GRN--I-NRI 371 (474)
T ss_pred EEEcCHHHHHHHHHHHHHcCCChHHhCCEEEEECHHHHHHHHhC------CCccC--CcccccceeEEe-ccc--c-cce
Confidence 9999999999999999988764 489999999999999999 99985 899999998755 221 2 799
Q ss_pred EEEcCCcChhHHHHHHHhCCCe-eEEEeeee--eeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCc
Q 022176 182 LYPASAKASNEIEEGLSNRGFE-VVRLNTYT--TEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSN 255 (301)
Q Consensus 182 Li~rg~~~~~~L~~~L~~~G~~-v~~~~vY~--~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~ 255 (301)
++++++ .|+. |.+...|+ +...+.....+.+ .-+|.|+|||+++|++|++.++..+. .++
T Consensus 372 l~~~~~------------~g~~~~~~~~~y~~~~~~~~~~~~~l~e--~~~d~iiFtS~ssV~~f~~~~~~~~~~~~~~~ 437 (474)
T PRK07168 372 AFIQEK------------IGAGSYMMTHKYTIDHRFDEVHSRMLSE--FLWDSIVFEGRASIDTFLAEVKRLGFIDIVTL 437 (474)
T ss_pred eecccC------------CCCceEEEEEEeeccccccchhhhHHhh--ccCceEEECCHHHHHHHHHHHHhhCchhhccC
Confidence 999976 5666 99999999 5553332222222 23899999999999999999876542 378
Q ss_pred eEEEECHHHHHHHHHcCCCee
Q 022176 256 SVACIGETTASAAKRLGLKNV 276 (301)
Q Consensus 256 ~i~aIG~~Ta~al~~~G~~~~ 276 (301)
+++||||.|++++.++|+.++
T Consensus 438 ~~~~iGp~t~~~a~~~G~~~~ 458 (474)
T PRK07168 438 PFSYTDVPTLHYANKVGFHNI 458 (474)
T ss_pred ceEEeCHHHHHHHHHhCCCcc
Confidence 899999999999999999863
No 11
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=100.00 E-value=9e-32 Score=226.43 Aligned_cols=242 Identities=20% Similarity=0.234 Sum_probs=208.2
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-----
Q 022176 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA----- 124 (301)
Q Consensus 51 ~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~----- 124 (301)
.+|++..... ..+.+...|+.+|.+++.+|++.++... .+++...|+...+|-.|||||+..|+++-+.+.+.
T Consensus 4 ~~vlllK~~s~~~D~Y~~~l~~~~~epifIP~l~f~f~~-l~~lr~kL~~p~kY~giIfTSpR~VEa~~eaL~q~~tel~ 82 (260)
T KOG4132|consen 4 VTVLLLKNKSVPIDPYEEELRSYGLEPIFIPVLSFTFVN-LQQLRAKLNNPPKYAGIIFTSPRCVEALNEALIQTETELK 82 (260)
T ss_pred eeEEEecCCCCCCCHHHHHHHhcCCCceeecceeeeecc-HHHHHHHhcCchhhceeEEeChHHHHHHHHHhccccchhh
Confidence 4677766554 6789999999999999999999999875 36788889888999999999999999998888732
Q ss_pred -CCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcCCcChhHHHHHHHhCC
Q 022176 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRG 201 (301)
Q Consensus 125 -~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~~~~~L~~~L~~~G 201 (301)
.|....+|+||++|...++.. |+.....-...+++.|++.|.+.. .+....|+++|+..++.|...|.+.|
T Consensus 83 ~~w~a~~vYtVG~aT~~si~~~------~~l~T~Ge~~gNa~~LaD~Ive~~~~~~alPLLfpcGn~~rdil~kkL~~~G 156 (260)
T KOG4132|consen 83 AAWLAKHVYTVGPATHASIRRL------GFLNTHGEDAGNAEILADLIVETFTDKRALPLLFPCGNLRRDILPKKLHDKG 156 (260)
T ss_pred hHHhhcceeeeccccHHHHHHh------cCccccccccccHHHHhHhhhhcCCCcccCceEEEcccchhHHHHHHHHhCC
Confidence 255789999999999999998 765544444578999999998753 25567999999999999999999999
Q ss_pred CeeEEEeeeeeeeCCCCcHHHHHHc---CCCCEEEEEChHHHHHHHHhhhccc--CCCceEEEECHHHHHHHHHcCCCee
Q 022176 202 FEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKNV 276 (301)
Q Consensus 202 ~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~I~ftS~sav~~~~~~l~~~~--~~~~~i~aIG~~Ta~al~~~G~~~~ 276 (301)
+.|..+.||+++..++...++...+ +.+|||+|+||++++..++.+.... ..+.++++|||+|+++|++.|.+++
T Consensus 157 ~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~~s~~~~k~aaIGPtT~kaL~~~g~~~~ 236 (260)
T KOG4132|consen 157 IRVDSCEVYETREHPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSNRSGDHLKLAAIGPTTRKALEDLGVKVD 236 (260)
T ss_pred ceeeEEEEEeeeecccHHHHHHHHHHhcCCcceEEEECcchHHHHHHHHHHhccchhheeEEEeCcchHHHHHHcCCCcc
Confidence 9999999999998887666555443 4789999999999999999987654 2378999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHHccC
Q 022176 277 YYPTHPGLEGWVDSILEALREHG 299 (301)
Q Consensus 277 ~v~~~ps~e~ll~ai~~~~~~~~ 299 (301)
.+++.|+++.|+..|..+..+|+
T Consensus 237 ~vs~~P~pe~L~~~I~~~~~~~~ 259 (260)
T KOG4132|consen 237 VVSPAPDPESLADAIELYQRHKG 259 (260)
T ss_pred eecCCCCHHHHHHHHHhhhhccC
Confidence 99999999999999999998876
No 12
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=99.64 E-value=2.5e-15 Score=133.14 Aligned_cols=120 Identities=22% Similarity=0.244 Sum_probs=102.3
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCc-hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC-
Q 022176 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG- 125 (301)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~-~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~- 125 (301)
+.|++|+++|+....+.+.+.|+++|+++..+|+|++++.++. ......+ ..+.+|+|+|||+++|+.|++.+...+
T Consensus 123 ~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~-~~~~~d~ivftS~~~v~~~~~~~~~~~~ 201 (249)
T PRK05928 123 LKGKRVLYLRGNGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARL-QSGEVDAVIFTSPSTVRAFFSLAPELGR 201 (249)
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHH-HhCCCCEEEECCHHHHHHHHHHhcccch
Confidence 6799999999999999999999999999999999999986532 2222222 136899999999999999999886654
Q ss_pred ---CCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccC
Q 022176 126 ---TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (301)
Q Consensus 126 ---~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~ 174 (301)
..+.+++|||+.|+++|+++ |+.++++|+.++.++|++.|...
T Consensus 202 ~~~~~~~~~~aiG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~~l~~~ 247 (249)
T PRK05928 202 REWLLSCKAVVIGERTAEALREL------GIKVIIVPDSADNEALLRALKEL 247 (249)
T ss_pred hHHHhCCeEEEeCHHHHHHHHHc------CCCcceecCCCChHHHHHHHHHh
Confidence 34899999999999999999 99999999999999999888653
No 13
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=99.60 E-value=1.5e-14 Score=126.95 Aligned_cols=118 Identities=21% Similarity=0.269 Sum_probs=102.8
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc--
Q 022176 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (301)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-- 124 (301)
.+.+.+|+++|+......+.+.|+++|+++..+|+|+.++.++.+...+.+ +...+|+|+|||+++|+.|++.+.+.
T Consensus 119 ~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l-~~~~~~~iiftS~~~v~~f~~~~~~~~~ 197 (239)
T cd06578 119 DGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLDAELLELL-EEGAIDAVLFTSPSTVRNLLELLGKEGR 197 (239)
T ss_pred CCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCCCcHHHHHHH-HcCCCcEEEEeCHHHHHHHHHHHhhhhh
Confidence 467999999999988899999999999999999999999887555555666 33578899999999999999988753
Q ss_pred -CCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHh
Q 022176 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (301)
Q Consensus 125 -~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l 171 (301)
.+.+.+++|||+.|++.|++. |+++++++..++.++|++.+
T Consensus 198 ~~~~~~~~~aig~~t~~~l~~~------g~~~~~~~~~~~~~~l~~~i 239 (239)
T cd06578 198 ALLKNVKIAAIGPRTAEALREL------GLKVVIVAESPTLEALLEAL 239 (239)
T ss_pred hhhcCCeEEEECHHHHHHHHHc------CCCceeeecCCChHHHHhhC
Confidence 356899999999999999999 99998999888899998754
No 14
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=99.56 E-value=3.2e-14 Score=127.96 Aligned_cols=115 Identities=23% Similarity=0.331 Sum_probs=97.6
Q ss_pred CCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCc-HHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCC
Q 022176 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-QTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 254 (301)
Q Consensus 176 ~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~ 254 (301)
..|++||+.|+......|.+.|++.|+++..+++-+..+.+... ...+..+.++|||+|||+++|+.|+...+.....+
T Consensus 16 l~g~~IlvTRp~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~~~~~~~~ 95 (266)
T PRK08811 16 DAAWTLISLRPSGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAVRAAHRLLPLQRPAR 95 (266)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHHHHHHHHhcccCccC
Confidence 36899999999999999999999999999999998887665321 12334467999999999999999987553322347
Q ss_pred ceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHH
Q 022176 255 NSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDS 290 (301)
Q Consensus 255 ~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~a 290 (301)
.+++|||++|+++|+++|+.++++|+.++.|+|++.
T Consensus 96 ~~~~AVG~~TA~aL~~~G~~~~~~P~~~~se~Ll~l 131 (266)
T PRK08811 96 AHWLSVGEGTARALQACGIDEVVRPTRMDSEGLLAL 131 (266)
T ss_pred CeEEEECHHHHHHHHHcCCCceeCCCCCCcHHHHhC
Confidence 899999999999999999999999999999999987
No 15
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=99.54 E-value=6.7e-14 Score=125.24 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=99.1
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcH--HHHHHcCCCCEEEEEChHHHHHHHHhhhcccC--
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ--TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ-- 252 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~--~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-- 252 (301)
.|++||+.|+......+.+.|++.|+++..+|+-+..+.+.... ..+..+..+|||+|||+++|+.|++.+...+.
T Consensus 2 ~g~~vlvTRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~~~ 81 (255)
T PRK05752 2 SGWRLLLTRPAEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWPQP 81 (255)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCCCC
Confidence 47899999999999999999999999999999999988765432 23344679999999999999999998865431
Q ss_pred CCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHH
Q 022176 253 WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 291 (301)
Q Consensus 253 ~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai 291 (301)
.+++++|||+.|+++|+++|+.++++|+.++.++|++.+
T Consensus 82 ~~~~~~aVG~~Ta~al~~~G~~~~~~p~~~~se~Ll~~~ 120 (255)
T PRK05752 82 PQQPWFSVGAATAAILQDYGLDVSYPEQGDDSEALLALP 120 (255)
T ss_pred cCCEEEEECHHHHHHHHHcCCCcccCCCCCCcHHHHhCh
Confidence 257999999999999999999998888999999999863
No 16
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=99.53 E-value=1.1e-13 Score=130.79 Aligned_cols=121 Identities=21% Similarity=0.284 Sum_probs=98.5
Q ss_pred CCCCCCeEEEeCCC-----CchHHHHHHHHhCCCcEEEeceeEeeeCCCch---HHHHHHhcCCCccEEEEeChHHHHHH
Q 022176 46 ASNSNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSVF 117 (301)
Q Consensus 46 ~~l~g~~IlitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~---~l~~~l~~l~~~d~IiftS~~av~~f 117 (301)
....|++|++.+.. .....+.+.|++.|++|..+|+|++++..+.+ .+...+ .-+.+|+|+|||+++|+.|
T Consensus 138 ~~~~g~~vli~~~~~~~~~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l-~~~~~d~v~FtS~stv~~f 216 (381)
T PRK07239 138 EGVAGKRIAVQLHGATDEWEPLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAI-ASRGLDAVTFTSAPAVAAL 216 (381)
T ss_pred CCCCCCEEEEEcCCCccccCchHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHH-HcCCccEEEEcCHHHHHHH
Confidence 45679999998765 33468999999999999999999998764332 333333 2357999999999999999
Q ss_pred HHHHHHcC---------CCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccC
Q 022176 118 LEAWKEAG---------TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (301)
Q Consensus 118 ~~~l~~~~---------~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~ 174 (301)
++.+.+.+ ..+++++|||+.|+++|+++ |+.+ .+|+.++.++|++.|.+.
T Consensus 217 ~~~l~~~~~~~~~~~~~~~~~~i~aIGp~Ta~al~~~------G~~~-~vp~~~t~~~Lv~~i~~~ 275 (381)
T PRK07239 217 LERAREMGLLDQLLAALRTDVLAACVGPVTAAPLVRA------GVPT-SAPERMRLGALARHITEE 275 (381)
T ss_pred HHHHHHcCChHHHHHhhccCCEEEEECHHHHHHHHHc------CCCc-cCCCCCCHHHHHHHHHHH
Confidence 99887543 24688999999999999999 9998 579999999999998654
No 17
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=99.50 E-value=4.2e-13 Score=129.44 Aligned_cols=237 Identities=13% Similarity=0.152 Sum_probs=154.4
Q ss_pred CCCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEe---------eeC--------------CCchHHHH--HH
Q 022176 48 NSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQH---------AQG--------------PDTDRLSS--VL 97 (301)
Q Consensus 48 l~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~---------~~~--------------~d~~~l~~--~l 97 (301)
..|++|++.-..+ ...+..+.|.+.|+++..+|=+.- .|. ........ .+
T Consensus 78 ~~Gk~VvrL~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~viT~h~~~~~~~~~~~ 157 (474)
T PRK07168 78 KEGKIVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGPLTDHGKY 157 (474)
T ss_pred hCCCEEEEEeCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEEccCcCCccccchhH
Confidence 3688888765543 346778899999988888874331 111 00000000 00
Q ss_pred hcCCCc-cEEEEeChHHHHHHHHHHHHcCC-CCceEEEEchhh----------HHHHHHHhhcccCCCc---eeecCCCC
Q 022176 98 NADTIF-DWIIITSPEAGSVFLEAWKEAGT-PNVRIGVVGAGT----------ASIFEEVIQSSKCSLD---VAFSPSKA 162 (301)
Q Consensus 98 ~~l~~~-d~IiftS~~av~~f~~~l~~~~~-~~~~i~avG~~T----------a~~L~~~~~~~~~G~~---~~~~p~~~ 162 (301)
..+... ..++++...-.....+.|.+.|. ++.+++++-..| -+.+.+..... ++. +.++.+--
T Consensus 158 ~~l~~~~tlV~lm~~~~l~~I~~~L~~~G~~~~tpvavv~~~t~~~Qri~~~tL~~l~~~~~~~--~~~~pavivvG~vv 235 (474)
T PRK07168 158 NSSHNSDTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNE--NISNPSMTIVGDVV 235 (474)
T ss_pred HHhcCCCeEEEEcChhhHHHHHHHHHHcCcCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhc--CCCCCEEEEEChHh
Confidence 112222 45666666666667777777775 366665544333 33332211100 332 11222111
Q ss_pred c-HHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHH
Q 022176 163 T-GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR 241 (301)
Q Consensus 163 ~-~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~ 241 (301)
. .+.+ .........|++||++|+......|.+.|++.|++|.++|+.+..+.+.. +..++.+.+||||+|||+++|+
T Consensus 236 ~~~~~~-~~~~~~PL~G~~IlVtR~~~q~~~l~~~L~~~GA~v~~~P~i~~~~~~~~-~~~l~~l~~ydwlvFTS~ngV~ 313 (474)
T PRK07168 236 SLRNQI-AWKERKPLHGKKVLFTSATNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLT-LEQINEIFNVNRLVFCSAESVE 313 (474)
T ss_pred cccccc-chhhcccccCceEEeeccHHHHHHHHHHHHHcCCEEEEeccEEeeCCCCc-HHHHHHhccCCEEEEcCHHHHH
Confidence 1 1111 22233444789999999999999999999999999999999997654433 3455667899999999999999
Q ss_pred HHHHhhhcccC----CCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHH
Q 022176 242 SWVNLISDTEQ----WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDS 290 (301)
Q Consensus 242 ~~~~~l~~~~~----~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~a 290 (301)
.|++.+.+.+. ...+++|||+.|+++|+++|+.++ |++++.+++++.
T Consensus 314 ~Ff~~l~~~~~D~R~l~~kiaavG~~Ta~aL~~~Gl~~d--p~~~~~e~~l~~ 364 (474)
T PRK07168 314 ILMQSCSKYKKDIRSLQAELQHMNVATQEKLMQYGLLSK--EAKFSSDTTVYL 364 (474)
T ss_pred HHHHHHHHcCCChHHhCCEEEEECHHHHHHHHhCCCccC--CcccccceeEEe
Confidence 99999987542 247999999999999999999885 888998888765
No 18
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=99.47 E-value=5e-13 Score=119.16 Aligned_cols=119 Identities=26% Similarity=0.371 Sum_probs=103.4
Q ss_pred CCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CC
Q 022176 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WS 254 (301)
Q Consensus 178 ~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~ 254 (301)
+++||+.|.....+.+.+.|++.|+++..++..+..+... .+..+..+..+|||+|||+++|+.|++.+...+. .+
T Consensus 1 ~~~vlvtR~~~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~-l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~ 79 (248)
T COG1587 1 GMRVLVTRPREQAEELAALLRKAGAEPLELPLIEIEPLPD-LEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDALKN 79 (248)
T ss_pred CcEEEEeCchhhhHHHHHHHHhCCCcceeecceeeecchh-HHHHHhccccCCEEEEECHHHHHHHHHHHHhhccccccc
Confidence 4799999999889999999999999999999999988654 3333444556999999999999999999887542 26
Q ss_pred ceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 255 NSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 255 ~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
.+++|||+.|+++++++|++++++|+..+.+++++.+..+.+.
T Consensus 80 ~~i~aVG~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~ 122 (248)
T COG1587 80 KKIAAVGEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKG 122 (248)
T ss_pred CeEEEEcHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccC
Confidence 8999999999999999999999999999999999999887643
No 19
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=99.45 E-value=1.3e-13 Score=121.09 Aligned_cols=116 Identities=23% Similarity=0.294 Sum_probs=97.6
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc--
Q 022176 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (301)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-- 124 (301)
.+.+.+||+.|.......|.+.|+++|++|..+++|+..+.+....+.+.+. .+.+|+|+|||+.+++.|++.+.+.
T Consensus 114 ~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~-~~~~~~v~ftS~~~~~~~~~~~~~~~~ 192 (231)
T PF02602_consen 114 QLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALD-RGEIDAVVFTSPSAVRAFLELLKKNGA 192 (231)
T ss_dssp CCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHH-HTTTSEEEESSHHHHHHHHHHSSGHHH
T ss_pred hCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHH-cCCCCEEEECCHHHHHHHHHHhHhhhh
Confidence 4667889999999899999999999999999999999922223345555552 3789999999999999999887653
Q ss_pred CCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHH
Q 022176 125 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILAS 169 (301)
Q Consensus 125 ~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~ 169 (301)
.+++.+++|||+.|++.++++ |++++.+|+.++.++|++
T Consensus 193 ~~~~~~~~~ig~~ta~~l~~~------g~~~~~va~~~~~~~lv~ 231 (231)
T PF02602_consen 193 LLKRVPIVAIGPRTAKALREL------GFKVDIVAERPTIEALVE 231 (231)
T ss_dssp HHTTSEEEESSHHHHHHHHHT------T-SCSEEESSSSHHHHHH
T ss_pred hhhCCEEEEECHHHHHHHHHc------CCCceEECCCCChhHhhC
Confidence 457999999999999999999 999999999999999874
No 20
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=99.42 E-value=2.7e-12 Score=113.83 Aligned_cols=118 Identities=17% Similarity=0.119 Sum_probs=97.6
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc--
Q 022176 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (301)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d-~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-- 124 (301)
..|++||+.|+....+.+.+.|+++|+++..+++|+.++.+. ...+.+.+ .-..+|+|+|||+.+++.|++.+...
T Consensus 116 ~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~i~f~S~~~~~~f~~~~~~~~~ 194 (240)
T PRK09189 116 APTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAIL-GGAPFDAVLLYSRVAARRFFALMRLSIA 194 (240)
T ss_pred CCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHH-hcCCCCEEEEeCHHHHHHHHHHHhhhcC
Confidence 367899999999888999999999999999999999987653 23444555 33679999999999999999988543
Q ss_pred --CCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 125 --GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 125 --~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
.+.+.+++|||+.|++++++. |...+.+++.++.++|++.+.
T Consensus 195 ~~~l~~~~~v~Ig~~ta~al~~~------~~~~~~ia~~~t~~~l~~~l~ 238 (240)
T PRK09189 195 PPADEKTRFLCLSARVAAALPAS------LRAQALIAAMPDEKSLLSLLS 238 (240)
T ss_pred cccccccCeEEeCHHHHHHHhhc------cccceeecCCCCHHHHHHHhh
Confidence 235788999999999999887 665556688899999988765
No 21
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=99.39 E-value=4.4e-12 Score=127.18 Aligned_cols=119 Identities=19% Similarity=0.221 Sum_probs=100.3
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcH--HHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCC
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ--TVLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 254 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~--~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~ 254 (301)
.+.+||+.|+......|.+.|++.|+++..+++++..+...... ..+..+..||+|+|||+.+|++|++.+......+
T Consensus 2 ~~~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~~~ 81 (656)
T PRK06975 2 RAFTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWPHA 81 (656)
T ss_pred CCCEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCccC
Confidence 35799999999999999999999999999999999887665322 2334467999999999999999999876543336
Q ss_pred ceEEEECHHHHHHHHHcCCCeeEe------------cCCCCHHHHHHHHHHHH
Q 022176 255 NSVACIGETTASAAKRLGLKNVYY------------PTHPGLEGWVDSILEAL 295 (301)
Q Consensus 255 ~~i~aIG~~Ta~al~~~G~~~~~v------------~~~ps~e~ll~ai~~~~ 295 (301)
++++|||+.|+++++++|+.++++ +..++.++|++.+....
T Consensus 82 ~~i~AVG~~Ta~aL~~~Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~ 134 (656)
T PRK06975 82 LPVAVVGPGSVAALARHGIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAF 134 (656)
T ss_pred CeEEEECHHHHHHHHHcCCCCceeeccccccccCCCCCccchHHHHHhHHHhc
Confidence 899999999999999999998776 46689999999998754
No 22
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=99.37 E-value=1e-11 Score=105.50 Aligned_cols=120 Identities=16% Similarity=0.257 Sum_probs=106.2
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCc-hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC--C
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG--T 126 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~-~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~--~ 126 (301)
..-.|++-.....+.+.+.|.+.|+.|..+-+|+++..+|. .++..+++.-+..|||+|.||+++++..+++.... .
T Consensus 133 alPLLfpcGn~~rdil~kkL~~~G~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~~s~ 212 (260)
T KOG4132|consen 133 ALPLLFPCGNLRRDILPKKLHDKGIRVDSCEVYETREHPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSNRSG 212 (260)
T ss_pred cCceEEEcccchhHHHHHHHHhCCceeeEEEEEeeeecccHHHHHHHHHHhcCCcceEEEECcchHHHHHHHHHHhccch
Confidence 33478888788899999999999999999999999999874 67888887777899999999999999999887654 4
Q ss_pred CCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC
Q 022176 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (301)
Q Consensus 127 ~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~ 175 (301)
++.++++|||.|+++|++. |++++.+.+.++.+.|+..|...+
T Consensus 213 ~~~k~aaIGPtT~kaL~~~------g~~~~~vs~~P~pe~L~~~I~~~~ 255 (260)
T KOG4132|consen 213 DHLKLAAIGPTTRKALEDL------GVKVDVVSPAPDPESLADAIELYQ 255 (260)
T ss_pred hheeEEEeCcchHHHHHHc------CCCcceecCCCCHHHHHHHHHhhh
Confidence 7999999999999999999 999999988999999999886543
No 23
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=96.93 E-value=0.058 Score=47.42 Aligned_cols=179 Identities=13% Similarity=0.071 Sum_probs=100.0
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..++. ..+.+...+.++. -.+.|+||+.+........+.+.. .+++++.++...
T Consensus 20 ~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~---~~ipvV~~~~~~--- 88 (268)
T cd06298 20 GIDDIATMYKYNIILSNS-----DNDKEKELKVLNNLLAKQVDGIIFMGGKISEEHREEFKR---SPTPVVLAGSVD--- 88 (268)
T ss_pred HHHHHHHHcCCeEEEEeC-----CCCHHHHHHHHHHHHHhcCCEEEEeCCCCcHHHHHHHhc---CCCCEEEEcccc---
Confidence 445677888998876642 1122222222222 257999999865433334444433 478899988642
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-h-------hHHHHHHHhCCCeeEEEeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-S-------NEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
... ++.. +.++. ..+..+++.|.+. ..++|+++.+... . .-+.+.++++|..+....++..
T Consensus 89 -~~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~ 158 (268)
T cd06298 89 -EDN------ELPS-VNIDYKKAAFEATELLIKN--GHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEG 158 (268)
T ss_pred -CCC------CCCE-EEECcHHHHHHHHHHHHHc--CCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeC
Confidence 111 2222 12222 3345566667654 3578999976544 1 3456778888866533223322
Q ss_pred eeCCCCcHHHHHH-cC--CCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 213 EPVHHVDQTVLKQ-AL--SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 213 ~~~~~~~~~~~~~-~~--~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
...........+. +. .+++|+.++...+..+++.+.+.+. .++.+++++..
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~vvg~d~~ 215 (268)
T cd06298 159 DYTYESGYELAEELLEDGKPTAAFVTDDELAIGILNAAQDAGLKVPEDFEIIGFNNT 215 (268)
T ss_pred CCChhHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEeeccH
Confidence 1111111122222 22 2899999999888888888876552 36778888754
No 24
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=96.70 E-value=0.075 Score=47.10 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=99.2
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHH
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~ 144 (301)
+.+.+++.|+++..+..-. . +...+.+.+ .-.+.|+||+++...-...++.+.+ .+++++++|.....
T Consensus 32 i~~~~~~~g~~~~v~~~~~---~-~~~~~~~~l-~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~---- 99 (275)
T cd06295 32 IADALAERGYDLLLSFVSS---P-DRDWLARYL-ASGRADGVILIGQHDQDPLPERLAE---TGLPFVVWGRPLPG---- 99 (275)
T ss_pred HHHHHHHcCCEEEEEeCCc---h-hHHHHHHHH-HhCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEECCccCC----
Confidence 5667778999987654311 1 122333333 2257999998765432333444433 47899999865321
Q ss_pred HhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeeeCCC
Q 022176 145 VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (301)
Q Consensus 145 ~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~~ 217 (301)
. .+..........++.+++.|.+. ..++|+++.+... ..-+.+.+++.|..+....++.......
T Consensus 100 ~------~~~~V~~d~~~~g~~~a~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 171 (275)
T cd06295 100 Q------PYCYVGSDNVGGGRLATEHLLAR--GRRRIAFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDFTEE 171 (275)
T ss_pred C------CCCEEEECcHHHHHHHHHHHHHC--CCCeEEEEcCCCCcchhHHHHHHHHHHHHHcCCCCChhhEEeccCCHH
Confidence 1 22221122223355566666654 3468999877543 1346677778775543322322211111
Q ss_pred CcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 218 VDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 218 ~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
........ + .++++|++++...+..+++.+.+.+. .++.+++++...
T Consensus 172 ~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~~l~~~g~~ip~~i~ii~~d~~~ 225 (275)
T cd06295 172 SGRAAMRALLERGPDFDAVFAASDLMALGALRALREAGRRVPEDVAVVGFDDIP 225 (275)
T ss_pred HHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCccceEEEeeCCch
Confidence 11111211 2 35899999998887777777766542 267788887544
No 25
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=96.54 E-value=0.074 Score=46.70 Aligned_cols=181 Identities=9% Similarity=0.005 Sum_probs=98.8
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.+++.|+++...+... +.+...+.++. ....|.||+++.+.-..+.+.+.. .++++++++...
T Consensus 20 gi~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvv~~~~~~--- 88 (268)
T cd01575 20 GISDVLEAAGYQLLLGNTGY-----SPEREEELLRTLLSRRPAGLILTGLEHTERTRQLLRA---AGIPVVEIMDLP--- 88 (268)
T ss_pred HHHHHHHHcCCEEEEecCCC-----CchhHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHh---cCCCEEEEecCC---
Confidence 45567788999887655311 11111222222 257999999886543344444443 368898887532
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
... ............+..+++.|.+. ..+++.++.+... ...+.+.|++.|..+.....+....
T Consensus 89 -~~~------~~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~ 159 (268)
T cd01575 89 -PDP------IDMAVGFSHAEAGRAMARHLLAR--GYRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPS 159 (268)
T ss_pred -CCC------CCCeEEeCcHHHHHHHHHHHHHC--CCCcEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccCC
Confidence 111 11111122223455566666654 3467888877653 2346677888886433322221111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
......+..+. + .++++|+..|...+..+++.+.+.+. .++.+++++...
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~di~vig~d~~~ 216 (268)
T cd01575 160 SFALGRELLAELLARWPDLDAVFCSNDDLALGALFECQRRGISVPEDIAIAGFGDLE 216 (268)
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCcceEEEecCCch
Confidence 00011122222 2 36899999998888888887776542 367788887653
No 26
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=96.53 E-value=0.13 Score=45.07 Aligned_cols=179 Identities=10% Similarity=0.019 Sum_probs=98.1
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..++.. .+.+...+.++. -.+.|.||+++.......++.+.+ .+++++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~ipvV~~~~~~~-- 89 (265)
T cd06299 20 AIQDAASAAGYSTIIGNSD-----ENPETENRYLDNLLSQRVDGIIVVPHEQSAEQLEDLLK---RGIPVVFVDREIT-- 89 (265)
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHhcCCCEEEEcCCCCChHHHHHHHh---CCCCEEEEecccC--
Confidence 4556678899988866432 122211222222 257999999875433323444443 4789999987532
Q ss_pred HHHHhhcccCCCceeecCCCCc-HHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++.. +..+.+. ...+++.|.+. ..++|+++.+.... .-+.+.++++|.++.....+...
T Consensus 90 --~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 158 (265)
T cd06299 90 --GS------PIPF-VTSDPQPGMTEAVSLLVAL--GHKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGG 158 (265)
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHc--CCCcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecC
Confidence 12 3322 1222222 23344555443 34689988765532 35677888888543322222211
Q ss_pred eCCCCcHHHHHH-cC-CCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQTVLKQ-AL-SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~~~~~~-~~-~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.......+.... +. .+++|+.++...+...+..+.+.+. .++.+++++..
T Consensus 159 ~~~~~~~~~~~~~l~~~~~av~~~~d~~a~gv~~al~~~g~~vp~dv~v~g~d~~ 213 (265)
T cd06299 159 YSQESGYAGATKLLDQGATAIIAGDSMMTIGAIRAIHDAGLVIGEDISLIGFDDL 213 (265)
T ss_pred cchHHHHHHHHHHHcCCCCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEeCCH
Confidence 111111122222 22 3899999999888888888876553 36778888854
No 27
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=96.51 E-value=0.075 Score=46.70 Aligned_cols=203 Identities=10% Similarity=0.023 Sum_probs=108.4
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~ 143 (301)
.+.+.++++|+++...... +.....+.+ .-..+|+||+++.+.-...+..+.+ .+++++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~~~------~~~~~~~~l-~~~~vdgii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~---- 85 (261)
T cd06272 20 GINQAISKNGYNMNVSITP------SLAEAEDLF-KENRFDGVIIFGESASDVEYLYKIK---LAIPVVSYGVDYD---- 85 (261)
T ss_pred HHHHHHHHcCCEEEEEecc------cHHHHHHHH-HHcCcCEEEEeCCCCChHHHHHHHH---cCCCEEEEcccCC----
Confidence 4446677889888776543 112222333 2257999998875543333333433 4688999987532
Q ss_pred HHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeeeCC
Q 022176 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (301)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (301)
. ++...-......+..+++.|.+. ..++|+++.+... ...+.+.++++|..+....++.. ...
T Consensus 86 -~------~~~~V~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~-~~~ 155 (261)
T cd06272 86 -L------KYPIVNVDNEKAMELAVLYLAEK--GHKKIAYIGDLSLDRRQRKRFKGFLETCDENGISISDSHIDVD-GLS 155 (261)
T ss_pred -C------CCCEEEEChHHHHHHHHHHHHHc--CchhEEEeecccccccHHHHHHHHHHHHHHcCCCCCHHHeeeC-CCC
Confidence 2 32221121223355566667654 3468888865443 12456677788754332222221 111
Q ss_pred C-CcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHH
Q 022176 217 H-VDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWV 288 (301)
Q Consensus 217 ~-~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll 288 (301)
. ...+.... + ..+++|+.++-..+..++..+.+.+. .++.+++.+......+-.-.+. .-..+.+.|.
T Consensus 156 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~dv~vvg~d~~~~~~~~~~~lt----tv~~~~~~~g 231 (261)
T cd06272 156 AEGGDNAAKKLLKESDLPTAIICGSYDIALGVLSALNKQGISIPEDIEIISYDNIPQMAIIDPPLT----AVDVPIEEIA 231 (261)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCCceEEEeeCChhHHhhcCCCCc----eeeccHHHHH
Confidence 1 11122222 2 34899999988877778777776542 3778888887644443222222 2223455555
Q ss_pred HHHHHH
Q 022176 289 DSILEA 294 (301)
Q Consensus 289 ~ai~~~ 294 (301)
+...+.
T Consensus 232 ~~a~~~ 237 (261)
T cd06272 232 KKSLEL 237 (261)
T ss_pred HHHHHH
Confidence 544443
No 28
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=96.50 E-value=0.1 Score=45.93 Aligned_cols=180 Identities=12% Similarity=0.047 Sum_probs=96.9
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|++++... .. .+.+...+.++. -...|+||+++...-...++.+.+ .+++++++|....
T Consensus 19 ~~i~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~l~~---~~iPvv~~~~~~~- 89 (268)
T cd06273 19 QAFQETLAAHGYTLLVAS---SG--YDLDREYAQARKLLERGVDGLALIGLDHSPALLDLLAR---RGVPYVATWNYSP- 89 (268)
T ss_pred HHHHHHHHHCCCEEEEec---CC--CCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEEcCCCC-
Confidence 356677888998887532 11 122211122222 246899999876543334444443 4688988886421
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC--------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.. .+..........+..+++.|.+. ..++|+++.+... ...+.+.|+++|..+....++..
T Consensus 90 ---~~------~~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~ 158 (268)
T cd06273 90 ---DS------PYPCVGFDNREAGRLAARHLIAL--GHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEA 158 (268)
T ss_pred ---CC------CCCEEEeChHHHHHHHHHHHHHC--CCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeC
Confidence 11 22211111122345566667654 3578998865431 23466778888865543333322
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECH
Q 022176 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (301)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~ 262 (301)
............. + ..+++|+.++...+..++..+.+.+. .++.+++++.
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~~~~~~l~~~g~~~p~~i~vig~d~ 215 (268)
T cd06273 159 PYSIADGRAALRQLLEQPPRPTAVICGNDVLALGALYEARRLGLSVPEDLSIVGFDD 215 (268)
T ss_pred CCcHHHHHHHHHHHHcCCCCCCEEEEcChHHHHHHHHHHHHcCCCCCCceEEEecCC
Confidence 1111111111112 2 35899999998888888887776542 3566777764
No 29
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=96.35 E-value=0.2 Score=43.93 Aligned_cols=182 Identities=11% Similarity=0.072 Sum_probs=97.7
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|+++..... ..+.+...+.++. -.++|+||+.....-...++.+.+ .+++++++|....
T Consensus 19 ~~i~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~l~~~~~---~~ipvV~~~~~~~- 89 (267)
T cd06283 19 KGIEDVCRAHGYQVLVCNS-----DNDPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAK---NGKPVVLVDRKIP- 89 (267)
T ss_pred HHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHhc---CCCCEEEEcCCCC-
Confidence 3555677788988764321 1122222223322 257899999875432222343433 4789999986531
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC--------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.. ++.....-....++.+++.|.+. ..++|+++.+... ...+.+.+++.|..+....+...
T Consensus 90 ---~~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~ 158 (267)
T cd06283 90 ---EL------GVDTVTLDNYEAAKEAVDHLIEK--GYERILFVTEPLDEISPRMERYEGFKEALAEHGIGVNEELIEID 158 (267)
T ss_pred ---CC------CCCEEEeccHHHHHHHHHHHHHc--CCCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCcceeEec
Confidence 12 33322222233466677777654 3468888765432 13456677777743222111111
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
........+..+. + ..+++|+.++...+..+++.+.+.+. .++.+++++..-
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~~~ 217 (267)
T cd06283 159 DEDADELDERLRQLLNKPKKKTAIFAANGLILLEVLKALKELGIRIPEDVGLIGFDDTE 217 (267)
T ss_pred ccchHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEEeCCcc
Confidence 1100111112222 2 25899999998888888888876653 256788887653
No 30
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=96.34 E-value=0.11 Score=45.58 Aligned_cols=181 Identities=12% Similarity=0.068 Sum_probs=98.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d-~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
..+.+.++++|+++.......- .+ .+.+.+.+ .-...|+||+++.+.-...++.+.+ .+++++++|....
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~-~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~-- 93 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPD---EDPLEVYRRLV-ESGLVDGVIISRTRPDDPRVALLLE---RGFPFVTHGRTEL-- 93 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCc---HHHHHHHHHHH-HcCCCCEEEEecCCCCChHHHHHHh---cCCCEEEECCcCC--
Confidence 3455667888999877754221 11 12233333 2256999999875432223343433 4678988876431
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. .+.. +..+. ..+...++.|.+. ..++++++.+... ..-+.+.++++|..+....++...
T Consensus 94 --~~------~~~~-V~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 162 (268)
T cd06271 94 --GD------PHPW-VDFDNEAAAYQAVRRLIAL--GHRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGD 162 (268)
T ss_pred --CC------CCCe-EeeCcHHHHHHHHHHHHHc--CCCcEEEecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeCC
Confidence 12 3222 12222 2344455566554 3478998876543 234567777887654332333321
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.......+..+. + ..+++|+..+...+..+++.+++.+. .++.+++++..
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~~i~iig~d~~ 219 (268)
T cd06271 163 MTEEGGYAAAAELLALPDRPTAIVCSSELMALGVLAALAEAGLRPGRDVSVVGFDDS 219 (268)
T ss_pred CChHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEecCc
Confidence 111111122222 2 35899999998888778777776653 25677777654
No 31
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=96.25 E-value=0.16 Score=43.99 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=95.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHH-HHHHHHHcCCCCceEEEEchhhH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~av~~-f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
..+.+.++++|+++...+.-. .++ .+.+.+.+ -.++|.||+.+...-.. .++.+.+ .+++++.++....
T Consensus 19 ~g~~~~~~~~g~~l~~~~~~~---~~~~~~~~~~~~~--~~~~d~ii~~~~~~~~~~~~~~l~~---~~ip~v~~~~~~~ 90 (264)
T cd01537 19 KGIEEAAKAAGYQVLLANSQN---DAEKQLSALENLI--ARGVDGIIIAPSDLTAPTIVKLARK---AGIPVVLVDRDIP 90 (264)
T ss_pred HHHHHHHHHcCCeEEEEeCCC---CHHHHHHHHHHHH--HcCCCEEEEecCCCcchhHHHHhhh---cCCCEEEeccCCC
Confidence 345566777888776554321 111 11222222 24789999877553332 2343433 4788988887654
Q ss_pred HHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCC-CeeEEEeeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTYT 211 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G-~~v~~~~vY~ 211 (301)
. .. .+..........+..+++.+.+.. .++|+++.+... ...+.+.+++.| ..+.....|.
T Consensus 91 ~---~~------~~~~v~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (264)
T cd01537 91 D---GD------RVPSVGSDNEQAGYLAGEHLAEKG--HRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQEGD 159 (264)
T ss_pred C---Cc------ccceEecCcHHHHHHHHHHHHHhc--CCcEEEEECCCCCCcHHHHHHHHHHHHHHcCCcChhhhccCC
Confidence 3 11 221111222234556666776543 478888876543 355667777777 2222111111
Q ss_pred eeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHHH
Q 022176 212 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTA 265 (301)
Q Consensus 212 ~~~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~Ta 265 (301)
............ + .++|+|+.++...+..+++.+.+.+. .++.+++.+....
T Consensus 160 --~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~g~~i~~~i~i~~~d~~~~ 218 (264)
T cd01537 160 --WDAEKGYQAAEELLTAHPDPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGTPE 218 (264)
T ss_pred --CCHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCCCeEEEeecCccH
Confidence 111111111212 2 24899999987777777777766543 3566776654433
No 32
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=96.22 E-value=0.26 Score=43.07 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=95.6
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|+++...+. . .+.+...+.+++ ....|+||+++.......++.+.+ .+++++.+|....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~~dgii~~~~~~~~~~~~~~~~---~~ipvv~~~~~~~- 89 (259)
T cd01542 19 KGILAALYENGYQMLLMNT---N--FSIEKEIEALELLARQKVDGIILLATTITDEHREAIKK---LNVPVVVVGQDYP- 89 (259)
T ss_pred HHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhc---CCCCEEEEeccCC-
Confidence 3445667788988765432 1 122222222222 268999999875433333444433 3688999986431
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC--------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.. . .........+..+++.|.+. ..++++++.+... ...+.+.+++.|. ....++..
T Consensus 90 ---~~------~--~v~~d~~~~~~~~~~~l~~~--g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~--~~~~~~~~ 154 (259)
T cd01542 90 ---GI------S--SVVYDDYGAGYELGEYLAQQ--GHKNIAYLGVSESDIAVGILRKQGYLDALKEHGI--CPPNIVET 154 (259)
T ss_pred ---CC------C--EEEECcHHHHHHHHHHHHHc--CCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCC--ChHHeeec
Confidence 11 1 11122223455566677664 3478888865421 1345677777775 11122221
Q ss_pred eeCCCCcHHHHHH-cC-C-CCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 213 EPVHHVDQTVLKQ-AL-S-IPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 213 ~~~~~~~~~~~~~-~~-~-~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
............. +. . +++|+.++-..+..+++.+.+.+. .++.+++++..-
T Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~i~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~~~ 212 (259)
T cd01542 155 DFSYESAYEAAQELLEPQPPDAIVCATDTIALGAMKYLQELGRRIPEDISVAGFGGYE 212 (259)
T ss_pred cCchhhHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEecCCch
Confidence 1111111112222 21 2 899999998888888888776653 257788887653
No 33
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=96.21 E-value=0.31 Score=43.13 Aligned_cols=218 Identities=14% Similarity=0.050 Sum_probs=109.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|+++.......-. ....+.+...+ -..+|+||+.+.+. ....++.+.+ .+++++.++..-..
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~~-~~~~~~i~~l~--~~~vdgiIi~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~~~ 92 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQKQ-ENQISAIRSFI--AQGVDVIILAPVVETGWDPVLKEAKA---AGIPVILVDRGVDV 92 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCH-HHHHHHHHHHH--HcCCCEEEEcCCccccchHHHHHHHH---CCCCEEEEecCcCC
Confidence 45667778899999976543210 00011222222 25799999977542 2444555544 46889998853110
Q ss_pred HHHHHhhcccCCCceeecCCCC-cHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCC-CeeEEEeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTYT 211 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G-~~v~~~~vY~ 211 (301)
.... .....+.++.+ .+..+++.|.+.....++++++.+... ..-+.+.|++++ ..+. ..+.
T Consensus 93 -~~~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~--~~~~ 163 (273)
T cd06309 93 -KDDS------LYVTFIGSDFVEEGRRAADWLAKATGGKGNIVELQGTVGSSVAIDRKKGFAEVIKKYPNMKIV--ASQT 163 (273)
T ss_pred -ccCc------ceeeEecCChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEe--eccC
Confidence 0000 11111222222 234455556554223478999877543 244677777763 3322 2222
Q ss_pred eeeCCCCcHH----HHHHcC-CCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHHH--HHHHHcCCCeeEecCC
Q 022176 212 TEPVHHVDQT----VLKQAL-SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTA--SAAKRLGLKNVYYPTH 281 (301)
Q Consensus 212 ~~~~~~~~~~----~~~~~~-~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~Ta--~al~~~G~~~~~v~~~ 281 (301)
.........+ +++... .+++|+.++-..+...+..+.+.+. .++.+++++.... +.+..-.+..+.....
T Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~aI~~~~d~~a~g~~~a~~~~g~~ip~di~iig~d~~~~~~~~~~~~~lt~~~~~~~ 243 (273)
T cd06309 164 GDFTRAKGKEVMEALLKAHGDDIDAVYAHNDEMALGAIQAIKAAGKKPGKDIKIVSIDGTKDAFQAMADGKLNATVECNP 243 (273)
T ss_pred CcccHHHHHHHHHHHHHhCCCCccEEEECCcHHHHHHHHHHHHcCCCCCCCeEEEecCCCHHHHHHHHcCceEEEEecCh
Confidence 1111111111 221122 5899988888888777777766543 3677888865543 3455434443332222
Q ss_pred CCHHHHHHHHHHHH
Q 022176 282 PGLEGWVDSILEAL 295 (301)
Q Consensus 282 ps~e~ll~ai~~~~ 295 (301)
.--...++.+.+.+
T Consensus 244 ~~g~~a~~~l~~~i 257 (273)
T cd06309 244 LFGPLAFDTLEKYL 257 (273)
T ss_pred hHHHHHHHHHHHHh
Confidence 11223344555554
No 34
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.06 E-value=0.55 Score=41.09 Aligned_cols=180 Identities=11% Similarity=0.100 Sum_probs=95.1
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.+++.|+++..... ..+.+...+.++. -.++|.||+.+.. ... .++.+.. .+++++.++....
T Consensus 20 g~~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~~~~~~---~~ipvV~~~~~~~ 90 (268)
T cd06289 20 GLEEVLEEAGYTVFLANS-----GEDVERQEQLLSTMLEHGVAGIILCPAAGTSPD-LLKRLAE---SGIPVVLVAREVA 90 (268)
T ss_pred HHHHHHHHcCCeEEEecC-----CCChHHHHHHHHHHHHcCCCEEEEeCCCCccHH-HHHHHHh---cCCCEEEEeccCC
Confidence 444567788987654321 1122222222222 2578999987643 333 3344433 4678888875431
Q ss_pred HHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
. . ++..........+..+++.|.+. ..++|+++.+... ...+.+.+++.|.++....++..
T Consensus 91 ~----~------~~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~ 158 (268)
T cd06289 91 G----A------PFDYVGPDNAAGARLATEHLISL--GHRRIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVEG 158 (268)
T ss_pred C----C------CCCEEeecchHHHHHHHHHHHHC--CCCCEEEecCCccccchHHHHHHHHHHHHHcCCCCCchhEEec
Confidence 1 1 22221111222345555666554 3468888876533 24566777777754433222221
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
...........+. + ..+++|+.++...+..+++.+++.+. .++.+++.+...
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~~~g~~~p~di~iig~d~~~ 217 (268)
T cd06289 159 PPSRQGGAEAVAQLLDLPPRPTAIVCFNDLVAFGAMSGLRRAGLTPGRDIAVVGFDDVA 217 (268)
T ss_pred CcchhhHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCch
Confidence 1111111122222 2 36899999999888888888876543 266788887654
No 35
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.00 E-value=0.23 Score=43.64 Aligned_cols=183 Identities=8% Similarity=0.032 Sum_probs=96.9
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
..+.+.+++.|+++.....-. .......+...+ .-..+|.||+.+...-....+.+.+ .++++++++.....
T Consensus 24 ~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~-~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~-- 95 (270)
T cd06294 24 RGISAVANENGYDISLATGKN--EEELLEEVKKMI-QQKRVDGFILLYSREDDPIIDYLKE---EKFPFVVIGKPEDD-- 95 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCC--cHHHHHHHHHHH-HHcCcCEEEEecCcCCcHHHHHHHh---cCCCEEEECCCCCC--
Confidence 345567788898887432111 000012222222 1245899999875433334444433 46889999864311
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEE-Eeeeeeee
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVR-LNTYTTEP 214 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~-~~vY~~~~ 214 (301)
.. ++..........+..+++.|.+. ..++|+++.+.... ..+.+.+++.|..... +..+ ..
T Consensus 96 -~~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~--~~ 164 (270)
T cd06294 96 -KE------NITYVDNDNIQAGYDATEYLIKL--GHKKIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVIIS--LD 164 (270)
T ss_pred -CC------CCCeEEECcHHHHHHHHHHHHHc--CCccEEEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceEEe--cC
Confidence 01 22221122223445566777665 34789999876542 2456677777753211 1111 11
Q ss_pred CC-CCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 215 VH-HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 215 ~~-~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
.. ....+.... + .++++|+..+...+..++..+.+.+. .++.+++.+..-
T Consensus 165 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~iP~dv~vig~d~~~ 222 (270)
T cd06294 165 FSEEGGYKALKKLLEQHPRPTAIVATDDLLALGVLKVLNELGLKVPEDLSIIGFNNSI 222 (270)
T ss_pred CchHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEEeeCChh
Confidence 11 111112211 2 35899999998888888877776553 356777777643
No 36
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=95.93 E-value=0.77 Score=40.37 Aligned_cols=190 Identities=10% Similarity=0.009 Sum_probs=97.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeCh--HHHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~--~av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
..+.+.++++|+++..... ...++ .+.+...+ -.++|+||+.+. ......++.+.+ .++++++++...
T Consensus 19 ~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~l~~~~--~~~vdgii~~~~~~~~~~~~i~~~~~---~~ipvV~~~~~~ 90 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDA---GGDDAKQADQIDQAI--AQKVDAIIIQHGRAEVLKPWVKRALD---AGIPVVAFDVDS 90 (273)
T ss_pred HHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHH--HcCCCEEEEecCChhhhHHHHHHHHH---cCCCEEEecCCC
Confidence 3456778899998876432 11111 11222222 247999999764 334444555544 467888887653
Q ss_pred HHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhCC-CeeEEEeeee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRG-FEVVRLNTYT 211 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~G-~~v~~~~vY~ 211 (301)
.. . ++..........+...++.|.+.....++|+++.+... ...+.+.+++.| ..+.......
T Consensus 91 ~~----~------~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~ 160 (273)
T cd06305 91 DN----P------KVNNTTQDDYSLARLSLDQLVKDLGGKGNVGYVNVAGFPPLDRRYDVWQAVLKAYPGIKEVAELGDV 160 (273)
T ss_pred CC----C------ccceeeechHHHHHHHHHHHHHHhCCCCCEEEEEccCCchHHHHHHHHHHHHHHCCCcEEecccccc
Confidence 21 2 22221122223344455666553223468888875422 124556677766 4332211100
Q ss_pred eeeCCCCcHH----HHHHcCCC--CEEEEEChHHHHHHHHhhhcccCC-CceEEEEC--HHHHHHHHH
Q 022176 212 TEPVHHVDQT----VLKQALSI--PVVAVASPSAVRSWVNLISDTEQW-SNSVACIG--ETTASAAKR 270 (301)
Q Consensus 212 ~~~~~~~~~~----~~~~~~~~--d~I~ftS~sav~~~~~~l~~~~~~-~~~i~aIG--~~Ta~al~~ 270 (301)
.........+ ++....++ ++|+..+...+..++..+++.+.. ++.+++++ +.+.+++.+
T Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~di~iig~d~~~~~~~~i~~ 228 (273)
T cd06305 161 SNNTAQDAAAQVEAVLKKYPKGGIDAIWAAWDEFAKGAKQALDEAGRTDEIKIYGVDISPEDLQLMRE 228 (273)
T ss_pred cccchhHHHHHHHHHHHHCCCcccCeEEEcChhhhHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHc
Confidence 0000111111 12122356 888888887877787777766532 57777776 344555554
No 37
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=95.88 E-value=0.56 Score=41.27 Aligned_cols=180 Identities=7% Similarity=0.014 Sum_probs=97.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++...... .+.+...+.++. -..+|+||+++..--...++.+.+ .++++++++...
T Consensus 20 g~~~~a~~~g~~~~~~~~~-----~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~--- 88 (268)
T cd06270 20 GVESVARKAGKHLIITAGH-----HSAEKEREAIEFLLERRCDALILHSKALSDDELIELAA---QVPPLVLINRHI--- 88 (268)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CchHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhh---CCCCEEEEeccC---
Confidence 4456678899998754321 121211222222 268999999764211112344433 467899998643
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
... +...........++.+++.|.+. ..++++++.+... ...+.+.++++|..+....++....
T Consensus 89 -~~~------~~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~ 159 (268)
T cd06270 89 -PGL------ADRCIWLDNEQGGYLATEHLIEL--GHRKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDF 159 (268)
T ss_pred -CCC------CCCeEEECcHHHHHHHHHHHHHC--CCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECCC
Confidence 111 22221122233455566677654 3468888876533 2235677888886543222222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
......+..+. + ..+++|+.++...+..+++.+.+.+. .++.+++++..
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ip~di~v~g~d~~ 215 (268)
T cd06270 160 TEEGGYAAMQELLARGAPFTAVFCANDEMAAGAISALREHGISVPQDVSIIGFDDV 215 (268)
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceeEEEecCc
Confidence 11111122222 2 35799999998888888888876542 36778888864
No 38
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=95.81 E-value=0.96 Score=39.64 Aligned_cols=181 Identities=9% Similarity=0.050 Sum_probs=99.0
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++....... +.+...+.++. -.++|.||+.+.+.-...+..+.. .++++++++....
T Consensus 20 ~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~-- 89 (264)
T cd06274 20 RLEALARERGYQLLIACSDD-----DPETERETVETLIARQVDALIVAGSLPPDDPYYLCQK---AGLPVVALDRPGD-- 89 (264)
T ss_pred HHHHHHHHCCCEEEEEeCCC-----CHHHHHHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh---cCCCEEEecCccC--
Confidence 34456778899887654321 22222222222 257999998876421111333333 4678999987642
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
.. ++..+.......+..+++.|.+. ..++|+++.+... ..-+.+.+.++|..+....++....
T Consensus 90 --~~------~~~~V~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~ 159 (264)
T cd06274 90 --PS------RFPSVVSDNRDGAAELTRELLAA--PPEEVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEGY 159 (264)
T ss_pred --CC------CCCEEEEccHHHHHHHHHHHHHC--CCCcEEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcceeecCCC
Confidence 12 32221221222344566666653 3468999877654 2245667778775543333333211
Q ss_pred CCCCcHHHHHH-c----CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 215 VHHVDQTVLKQ-A----LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 215 ~~~~~~~~~~~-~----~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
.........+. + ..+++|+..+...+..+++.+.+.+. .++.+++++...
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ip~dv~v~g~d~~~ 217 (264)
T cd06274 160 SPESGYQLMAELLARLGRLPRALFTTSYTLLEGVLRFLRERPGLAPSDLRIATFDDHP 217 (264)
T ss_pred ChHHHHHHHHHHHccCCCCCcEEEEcChHHHHHHHHHHHHcCCCCCcceEEEEeCCHH
Confidence 11111111222 2 24799999998888888888876653 367888888754
No 39
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.75 E-value=0.41 Score=41.99 Aligned_cols=179 Identities=10% Similarity=-0.044 Sum_probs=96.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++...+.- .+.+...+.++. -...|.||+++...-. ...... ..+++++.++..+..
T Consensus 21 ~i~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~~dgiii~~~~~~~-~~~~~~---~~~ipvv~~~~~~~~- 90 (269)
T cd06288 21 GAQDAAREHGYLLLVVNTG-----GDDELEAEAVEALLDHRVDGIIYATMYHRE-VTLPPE---LLSVPTVLLNCYDAD- 90 (269)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEecCCCCh-hHHHHH---hcCCCEEEEecccCC-
Confidence 4456677889887655321 121111122222 2578999998753221 111121 247899999876421
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
. .+..........+..+++.|.+. ..++++++.+... ...+.+.++++|.++....++....
T Consensus 91 ---~------~~~~v~~d~~~~~~~a~~~l~~~--g~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~ 159 (269)
T cd06288 91 ---G------ALPSVVPDEEQGGYDATRHLLAA--GHRRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDW 159 (269)
T ss_pred ---C------CCCeEEEccHHHHHHHHHHHHHc--CCceEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCCC
Confidence 2 33222222223456666777654 3468999876654 2235667777776543222222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.........+. + ..+|+|+.+|...+..+++.+.+.+. .++.+++.+..
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~v~g~d~~ 215 (269)
T cd06288 160 SADDGYEAAAALLDLDDRPTAIFCGNDRMAMGAYQALLERGLRIPQDVSVVGFDNQ 215 (269)
T ss_pred ChHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHcCCCCcccceEEeeCCc
Confidence 11111111112 2 35899999999988888888876653 36777777643
No 40
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=95.67 E-value=0.37 Score=44.74 Aligned_cols=181 Identities=9% Similarity=0.018 Sum_probs=110.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
..+...++++|++++..+.-.-. .......+.+ .-...|.||+.+...-+.+.+.+.+ .++|++.+|....
T Consensus 78 ~gi~~~~~~~gy~~~l~~~~~~~--~~e~~~~~~l-~~~~vdGiIi~~~~~~~~~~~~l~~---~~~P~V~i~~~~~--- 148 (333)
T COG1609 78 KGIEEAAREAGYSLLLANTDDDP--EKEREYLETL-LQKRVDGLILLGERPNDSLLELLAA---AGIPVVVIDRSPP--- 148 (333)
T ss_pred HHHHHHHHHcCCEEEEECCCCCH--HHHHHHHHHH-HHcCCCEEEEecCCCCHHHHHHHHh---cCCCEEEEeCCCc---
Confidence 45566778899999877766511 1111222223 2368999999985554555555555 3789999998754
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCee-EEEeeeeeee
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEV-VRLNTYTTEP 214 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v-~~~~vY~~~~ 214 (301)
.. ++..+.......+..+++.|.+.. .++|.++.+... ...+.+.|++.|..+ ..+......
T Consensus 149 -~~------~~~~V~~Dn~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~- 218 (333)
T COG1609 149 -GL------GVPSVGIDNFAGAYLATEHLIELG--HRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEGDF- 218 (333)
T ss_pred -cC------CCCEEEEChHHHHHHHHHHHHHCC--CceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEecCC-
Confidence 23 444433333344555677777653 468999988731 245778899999876 222222111
Q ss_pred CCCCcHH-HHHHc---CC-CCEEEEEChHHHHHHHHhhhcccC---CCceEEEECH
Q 022176 215 VHHVDQT-VLKQA---LS-IPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (301)
Q Consensus 215 ~~~~~~~-~~~~~---~~-~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~ 262 (301)
....... +.+.+ .. +++|+..|-..+-.+++.+.+.+. .++.+++.+.
T Consensus 219 ~~~~g~~~~~~ll~~~~~~ptAif~~nD~~Alg~l~~~~~~g~~vP~disviGfDd 274 (333)
T COG1609 219 SEESGYEAAERLLARGEPRPTAIFCANDLMALGALRALRELGLRVPEDLSVIGFDD 274 (333)
T ss_pred ChHHHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCeeEEEEecC
Confidence 1111111 12222 34 899999999999999887776653 2567788877
No 41
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.67 E-value=0.95 Score=41.23 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=120.3
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeee-CCC--chHHHHHHhcCCCccEEEEeCh----HHH-HH-----
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ-GPD--TDRLSSVLNADTIFDWIIITSP----EAG-SV----- 116 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~-~~d--~~~l~~~l~~l~~~d~IiftS~----~av-~~----- 116 (301)
|++|.|.-...+.-.+++.|.++|++|..+-+=+... ... ...+.+. .+.+.|+||+.=| ++. +.
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLEL--DLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhh--hhccCCEEEECCccccCCceEecccccC
Confidence 5788998888888999999999999977654321111 000 1111111 2467888887544 210 00
Q ss_pred ---H-HHHHHHcCCCCceEEEEchhhHH---HHHHHhhcccCCCcee------ecC---CCCcHHHHHHHhcc---CCCC
Q 022176 117 ---F-LEAWKEAGTPNVRIGVVGAGTAS---IFEEVIQSSKCSLDVA------FSP---SKATGKILASELPK---NGKK 177 (301)
Q Consensus 117 ---f-~~~l~~~~~~~~~i~avG~~Ta~---~L~~~~~~~~~G~~~~------~~p---~~~~~e~L~~~l~~---~~~~ 177 (301)
+ -+.+... +...++..|-.+.. ++++. |+.+. -++ ...++|+-+..+.+ ....
T Consensus 79 ~~~l~~~~l~~~--~~~~~~~~G~~~~~l~~~a~~~------gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~ 150 (287)
T TIGR02853 79 KVVLTPELLEST--KGHCTIYVGISNPYLEQLAADA------GVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIH 150 (287)
T ss_pred CccccHHHHHhc--CCCCEEEEecCCHHHHHHHHHC------CCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCC
Confidence 0 1122221 23444555544432 56666 88775 121 12445554433322 2236
Q ss_pred CCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCC-----------CcHHHHHHcCCCCEEEEEChHHH--HHHH
Q 022176 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----------VDQTVLKQALSIPVVAVASPSAV--RSWV 244 (301)
Q Consensus 178 ~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~-----------~~~~~~~~~~~~d~I~ftS~sav--~~~~ 244 (301)
+++++++........+...|...|.+| .+|.+.+... ....+.+.+.+.|+|+.+.|..+ +..+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V---~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l 227 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARV---FVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVL 227 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEE---EEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHH
Confidence 789999999888899999999999764 4555533210 01112223468999999998764 2223
Q ss_pred HhhhcccCCCceEEEE----CHHHHHHHHHcCCCeeEec
Q 022176 245 NLISDTEQWSNSVACI----GETTASAAKRLGLKNVYYP 279 (301)
Q Consensus 245 ~~l~~~~~~~~~i~aI----G~~Ta~al~~~G~~~~~v~ 279 (301)
+.+++ +..++=+ |.+-.+++++.|.+....+
T Consensus 228 ~~~k~----~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 228 SKLPK----HAVIIDLASKPGGTDFEYAKKRGIKALLAP 262 (287)
T ss_pred hcCCC----CeEEEEeCcCCCCCCHHHHHHCCCEEEEeC
Confidence 33322 2222211 4444588999999886544
No 42
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=95.65 E-value=0.45 Score=41.89 Aligned_cols=179 Identities=12% Similarity=0.064 Sum_probs=95.8
Q ss_pred HHHHHHHh-CCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 64 KLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~-~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.+.+.+++ .|++++..... .+.+...+.++. -.+.|+||+.+.. .....++.+.+ .+++++.++...
T Consensus 20 gi~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~---~~iPvv~~~~~~ 91 (272)
T cd06301 20 AMKEHAKVLGGVELQFEDAK-----NDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANA---AGIPLVYVNRRP 91 (272)
T ss_pred HHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHH---CCCeEEEecCCC
Confidence 44556667 78888765431 122222222222 2478999987654 23334444443 478899998753
Q ss_pred HHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~ 211 (301)
... .. ++..+.......+..+++.|.+.....++++++.|... ..-+.+.|+++| .+....++.
T Consensus 92 ~~~--~~------~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~-~~~~~~~~~ 162 (272)
T cd06301 92 ENA--PK------GVAYVGSDEVVAGRLQAEYVADKLGGKGNVAILMGPLGQSAQIDRTKGVEEVLAKYP-DIKVVEEQT 162 (272)
T ss_pred CCC--CC------eeEEEecChHHHHHHHHHHHHHHhCCCccEEEEECCCCCccHHHHHHHHHHHHHHCC-CcEEEecCC
Confidence 211 12 22221122223345566666654222358999877543 145677788887 333233222
Q ss_pred eeeCCCCcH---HHHHH----cCCCCEEEEEChHHHHHHHHhhhcccCC--CceEEEECH
Q 022176 212 TEPVHHVDQ---TVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQW--SNSVACIGE 262 (301)
Q Consensus 212 ~~~~~~~~~---~~~~~----~~~~d~I~ftS~sav~~~~~~l~~~~~~--~~~i~aIG~ 262 (301)
. ....+ +..+. ...+++|+..+...+...++.+.+.+.. ++.+++++.
T Consensus 163 ~---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~~di~ivg~d~ 219 (272)
T cd06301 163 A---NWSRAEAMDLMENWLSSGGKIDAVVANNDEMALGAIMALKAAGKSDKDVPVAGIDG 219 (272)
T ss_pred C---CccHHHHHHHHHHHHHhCCCCCEEEECCCchHHHHHHHHHHcCCCCCCcEEEeeCC
Confidence 1 21211 11111 2457999998888887787777765532 677777754
No 43
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=95.63 E-value=0.47 Score=43.28 Aligned_cols=178 Identities=11% Similarity=0.117 Sum_probs=96.1
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a-v~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
.+.+.++++|+++..... ..+.+...+.++. -..+|.||+.+... ...+++.+.+ .+++++++|...
T Consensus 82 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~v~~~~-- 151 (328)
T PRK11303 82 YLERQARQRGYQLLIACS-----DDQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRLQN---DGLPIIALDRAL-- 151 (328)
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHHHh---cCCCEEEECCCC--
Confidence 344566778988875432 1122211222222 25799999975421 1223444433 368899998753
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
... ++..........+...++.|.+.. .++|+++.+... ..-+.+.|+++|..+.. ++...
T Consensus 152 --~~~------~~~~V~~d~~~~~~~a~~~L~~~G--~r~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~--~~~~~ 219 (328)
T PRK11303 152 --DRE------HFTSVVSDDQDDAEMLAESLLKFP--AESILLLGALPELSVSFEREQGFRQALKDDPREVHY--LYANS 219 (328)
T ss_pred --CCC------CCCEEEeCCHHHHHHHHHHHHHCC--CCeEEEEeCccccccHHHHHHHHHHHHHHcCCCceE--EEeCC
Confidence 112 333322222233455666676543 478999876532 13567788888875422 22211
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.......+..+. + ..+++|+.++-..+...++.+.+.+. .++.+++++..
T Consensus 220 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~disv~gfd~~ 276 (328)
T PRK11303 220 FEREAGAQLFEKWLETHPMPDALFTTSYTLLQGVLDVLLERPGELPSDLAIATFGDN 276 (328)
T ss_pred CChHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEeCCh
Confidence 111111112222 2 35899999998877777777665542 36777788754
No 44
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.63 E-value=0.71 Score=37.24 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=70.5
Q ss_pred CCEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----HHHHHHHH
Q 022176 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWVN 245 (301)
Q Consensus 178 ~~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~-----sav~~~~~ 245 (301)
+.+||+...... ...+...|+..|++|..+-.. ++ .+++.+.. .++|+|.+++. ..++.+.+
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~--vp----~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~ 76 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVM--TS----QEEFIDAAIETDADAILVSSLYGHGEIDCRGLRE 76 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCC--CC----HHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHH
Confidence 356666544432 345677788899877544431 12 22333322 47787777652 34555666
Q ss_pred hhhcccCCCceEEEECHH---------HHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 246 LISDTEQWSNSVACIGET---------TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 246 ~l~~~~~~~~~i~aIG~~---------Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
.+++.+..+.++++-|.- ..+.++++|+..++ +..-+.+.++..|.++++.
T Consensus 77 ~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf-~~~~~~~~i~~~l~~~~~~ 136 (137)
T PRK02261 77 KCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVF-PPGTDPEEAIDDLKKDLNQ 136 (137)
T ss_pred HHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEE-CcCCCHHHHHHHHHHHhcc
Confidence 665544446777777753 23579999998877 4445899999999988764
No 45
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=95.63 E-value=0.76 Score=41.90 Aligned_cols=180 Identities=15% Similarity=0.082 Sum_probs=95.9
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
+.+.++++|+++..... ..+.+...+.++. -...|.||+.+...-....+.+.+ .+++++.+|...
T Consensus 81 i~~~~~~~g~~~~i~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~---- 148 (329)
T TIGR01481 81 IEDIATMYKYNIILSNS-----DEDPEKEVQVLNTLLSKQVDGIIFMGGTITEKLREEFSR---SPVPVVLAGTVD---- 148 (329)
T ss_pred HHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHh---cCCCEEEEecCC----
Confidence 34556778988765421 1122222222221 257999998765322333344433 367888888642
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC--------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
... ++..+.......+..+++.|.+. ..++|.++.|... ..-+.+.|+++|..+....++....
T Consensus 149 ~~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~ 220 (329)
T TIGR01481 149 KEN------ELPSVNIDYKQATKEAVGELIAK--GHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKY 220 (329)
T ss_pred CCC------CCCEEEECcHHHHHHHHHHHHHC--CCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCC
Confidence 112 33222221222334455666554 3468988865432 1335677888887654332322111
Q ss_pred CCCCcHHHHHH-c-CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 215 VHHVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 215 ~~~~~~~~~~~-~-~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
......+..+. + ..+++|+..+-..+..+++.+.+.+. .++.+++++...
T Consensus 221 ~~~~~~~~~~~ll~~~p~ai~~~~d~~A~g~~~al~~~g~~vP~dvsvvgfd~~~ 275 (329)
T TIGR01481 221 SYDAGYKAFAELKGSLPTAVFVASDEMAAGILNAAMDAGIKVPEDLEVITSNNTR 275 (329)
T ss_pred ChHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeeCCch
Confidence 11111122222 2 35799999998888888888876653 367888887643
No 46
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=95.62 E-value=1.2 Score=38.90 Aligned_cols=180 Identities=9% Similarity=-0.015 Sum_probs=95.5
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|+++..+.. ..+.+...+.++. -.+.|+||+++...-....+.+ ..+++++.++....
T Consensus 19 ~~i~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~----~~~ipvv~~~~~~~- 88 (267)
T cd06284 19 KGIEDEAREAGYGVLLGDT-----RSDPEREQEYLDLLRRKQADGIILLDGSLPPTALTAL----AKLPPIVQACEYIP- 88 (267)
T ss_pred HHHHHHHHHcCCeEEEecC-----CCChHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHH----hcCCCEEEEecccC-
Confidence 4566677888988875432 1122212222222 2578999998754222222222 13678888874321
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++..........+..+++.|.+. ..++|+++.+... ...+.+.++++|.++.....+...
T Consensus 89 ---~~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~ 157 (267)
T cd06284 89 ---GL------AVPSVSIDNVAAARLAVDHLISL--GHRRIALITGPRDNPLARDRLEGYRQALAEAGLPADEELIQEGD 157 (267)
T ss_pred ---CC------CcceEEecccHHHHHHHHHHHHc--CCceEEEEcCCccchhHHHHHHHHHHHHHHcCCCCCcceEEeCC
Confidence 11 22111112223455566666654 3468988877533 234667788888654432233221
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.......+..+. + ..+|+|+.+|...+..+...+.+.+. .++.+++++-.
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~al~~~g~~~p~~v~v~g~d~~ 214 (267)
T cd06284 158 FSLESGYAAARRLLALPDRPTAIFCFSDEMAIGAISALKELGLRVPEDISVVGFDDI 214 (267)
T ss_pred CChHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCccceeEEEeCCH
Confidence 111111111222 2 35899999998888788777776542 35677777644
No 47
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=95.61 E-value=1 Score=40.97 Aligned_cols=181 Identities=9% Similarity=0.044 Sum_probs=97.8
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++...+. . .+.+...+.++. -...|+||+++...-....+.+.. ..+++++.+|...
T Consensus 77 gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~--~~~iPvV~i~~~~--- 146 (327)
T PRK10423 77 GVERSCFERGYSLVLCNT---E--GDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQR--YPSVPTVMMDWAP--- 146 (327)
T ss_pred HHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhhHHHHHh--cCCCCEEEECCcc---
Confidence 445677788988765332 1 122222222222 257999999875432222222322 1368899998531
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
... .... +..+. ..+...++.|.+. ..++|+++.+... ..-+.+.|+++|..+.....+...
T Consensus 147 -~~~------~~~~-v~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~ 216 (327)
T PRK10423 147 -FDG------DSDL-IQDNSLLGGDLATQYLIDK--GYTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGD 216 (327)
T ss_pred -CCC------CCCE-EEEChHHHHHHHHHHHHHc--CCCeEEEEeCCccccchHHHHHHHHHHHHHcCCCCCcceEEeCC
Confidence 111 2222 22222 2345566667654 3478999876532 235677888888765332222111
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
.......+.... + ..+++|+.++-..+..+++.+.+.+. .++.+++++...
T Consensus 217 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~vP~dvsvigfd~~~ 274 (327)
T PRK10423 217 FEFNGGFDAMQQLLALPLRPQAVFTGNDAMAVGVYQALYQAGLSVPQDIAVIGYDDIE 274 (327)
T ss_pred CChHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEeCChh
Confidence 100111112222 2 35899999998888888888876653 377888887753
No 48
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=95.60 E-value=0.42 Score=41.80 Aligned_cols=180 Identities=11% Similarity=0.011 Sum_probs=98.8
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d-~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
..+.+.+++.|+++...+.- ..++ ..++.+.+ .-.+.|+||+.+...-...++.+.+ ..+++.++..+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~l-~~~~vdgiii~~~~~~~~~~~~~~~----~~pvv~~~~~~~-- 88 (260)
T cd06286 19 DGIEKAALKHGYKVVLLQTN---YDKEKELEYLELL-KTKQVDGLILCSRENDWEVIEPYTK----YGPIVLCEEYDS-- 88 (260)
T ss_pred HHHHHHHHHcCCEEEEEeCC---CChHHHHHHHHHH-HHcCCCEEEEeCCCCCHHHHHHHhc----CCCEEEEecccC--
Confidence 34556677889888765431 1111 11122222 2356899998765321222333432 238888886542
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
. ++..........+...++.|.+. ..++|+++.+... ..-+.+.|++.|..+....+|....
T Consensus 89 ---~------~~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~i~~~~~ 157 (260)
T cd06286 89 ---K------NISSVYIDHYEAFYEALKYLIQK--GYRKIAYCIGRKKSLNSQSRKKAYKDALEEYGLTPDEEWIFEGCF 157 (260)
T ss_pred ---C------CCCEEEECChHHHHHHHHHHHHC--CCceEEEEcCCcccchhHHHHHHHHHHHHHcCCCCChHheEeCCC
Confidence 2 43332222233455566667664 3478999987643 2346667888886653322332111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
......+..+. + ..+++|+..+-..+..+++.+.+.+. .++.+++++..
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~ip~di~v~g~d~~ 213 (260)
T cd06286 158 TIEDGERIGHQLLKMKDRPDAIFTGSDEVAAGIITEAKKQGIRVPEDLAIIGFDNQ 213 (260)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEcchHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 11111122222 1 36899999999998888888877653 36778888654
No 49
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.59 E-value=0.48 Score=41.53 Aligned_cols=179 Identities=9% Similarity=0.004 Sum_probs=96.0
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++...+.. .+.+...+.++. -...|.||+.+...-....+.+. .+++++.+|....
T Consensus 20 gi~~~~~~~gy~~~~~~~~-----~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~----~~iPvV~i~~~~~-- 88 (265)
T cd06290 20 GMERGLNGSGYSPIIATGH-----WNQSRELEALELLKSRRVDALILLGGDLPEEEILALA----EEIPVLAVGRRVP-- 88 (265)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHh----cCCCEEEECCCcC--
Confidence 3456677899988765431 222222223322 25699999886432222223221 3689999997531
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
.. ++..........+...++.|.+.. .++|+++.+.... ..+.+.+.+.|..+....++....
T Consensus 89 --~~------~~~~V~~d~~~a~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~ 158 (265)
T cd06290 89 --GP------GAASIAVDNFQGGYLATQHLIDLG--HRRIAHITGPRGHIDARDRLAGYRKALEEAGLEVQPDLIVQGDF 158 (265)
T ss_pred --CC------CCCEEEECcHHHHHHHHHHHHHCC--CCeEEEEeCccccchhhHHHHHHHHHHHHcCCCCCHHHEEecCC
Confidence 12 332211222233455556666543 4689888765331 335566677776543221211111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.........+. + ..+++|+.++...+..+++.+.+.+. .++.+++++..
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~aii~~~~~~a~~~~~~l~~~g~~ip~di~vi~~d~~ 214 (265)
T cd06290 159 EEESGLEAVEELLQRGPDFTAIFAANDQTAYGARLALYRRGLRVPEDVSLIGFDDL 214 (265)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEeeecCc
Confidence 01111112222 2 35899999999988888888876653 36778888754
No 50
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.54 E-value=0.67 Score=40.69 Aligned_cols=179 Identities=11% Similarity=0.061 Sum_probs=96.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|+++...+. ..+.....+.++. -..+|.||+.+...-...++.+.+ .++|++.+|....
T Consensus 19 ~gi~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~---~~iPvv~~~~~~~- 89 (265)
T cd06285 19 EGIEEAAAERGYSTFVANT-----GDNPDAQRRAIEMLLDRRVDGLILGDARSDDHFLDELTR---RGVPFVLVLRHAG- 89 (265)
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHH---cCCCEEEEccCCC-
Confidence 3556677888988653321 1122222222222 367999998764432223344433 4688999997531
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. . .........+...++.|.+. ..++++++.+... ..-+.+.+++.|..+.....+...
T Consensus 90 ---~~------~--~V~~d~~~ag~~a~~~L~~~--g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~ 156 (265)
T cd06285 90 ---TS------P--AVTGDDVLGGRLATRHLLDL--GHRRIAVLAGPDYASTARDRLAGFRAALAEAGIEVPPERIVYSG 156 (265)
T ss_pred ---CC------C--EEEeCcHHHHHHHHHHHHHC--CCccEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCC
Confidence 11 1 11122223345566667654 3468888877543 234566777788654322121111
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
..........+. + ..+++|+.++...+..+++.+.+.+. .++.+++.+..
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~ 213 (265)
T cd06285 157 FDIEGGEAAAEKLLRSDSPPTAIFAVNDFAAIGVMGAARDRGLRVPDDVALVGYNDI 213 (265)
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 111111112222 2 35799999999998888888877653 35667777654
No 51
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.51 E-value=0.58 Score=41.26 Aligned_cols=178 Identities=11% Similarity=0.070 Sum_probs=96.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHH-HHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av-~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
.+.+.++++|++++.... . .+.+.....++. -...|+||+++.+.- ..+.+.+.+ .+++++.++....
T Consensus 20 ~i~~~a~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~---~~ipvV~i~~~~~- 90 (269)
T cd06281 20 GAEDRLRAAGYSLLIANS---L--NDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALAS---LDLPIVLLDRDMG- 90 (269)
T ss_pred HHHHHHHHcCCEEEEEeC---C--CChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHh---CCCCEEEEecccC-
Confidence 445677888999875532 1 122212222222 257899998775321 233444443 4689999987542
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
. .+..........+..+++.|.+. ..++++++.+... ..-+.+.++++|..+.....|...
T Consensus 91 ----~------~~~~V~~d~~~~g~~a~~~l~~~--G~~~i~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~ 158 (269)
T cd06281 91 ----G------GADAVLFDHAAGMRQAVEYLISL--GHRRIALVGGGSNTRPGRERLEGYKAAFAAAGLPPDPALVRLST 158 (269)
T ss_pred ----C------CCCEEEECcHHHHHHHHHHHHHC--CCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCHHHeecCc
Confidence 2 22221122222344556666554 3468998877532 134567888888654221122211
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
. .....+..+. + ..+|+|+.+|-..+..+++.+.+.+. .++.+++.+..
T Consensus 159 ~-~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ip~dv~iig~d~~ 214 (269)
T cd06281 159 P-AASGFDATRALLALPDRPTAIIAGGTQVLVGVLRALREAGLRIPRDLSVISIGDS 214 (269)
T ss_pred H-HHHHHHHHHHHHcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcceeEEEecCc
Confidence 1 1111112222 2 35899998888888777777776553 36678888743
No 52
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.44 E-value=0.46 Score=42.36 Aligned_cols=178 Identities=10% Similarity=0.061 Sum_probs=99.5
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
..+.+.+++.|+++..++... +.+.+. .+ .....|+||+++.......++.+.. .+++++++|....
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~-----~~~~~~-~~-~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~--- 90 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASS-----EDSDSA-LV-VSALVDGFIVYGVPRDDPLVAALLR---RGLPVVVVDQPLP--- 90 (283)
T ss_pred HHHHHHHHHCCCEEEEecCcc-----HHHHHH-HH-HhcCCCEEEEeCCCCChHHHHHHHH---cCCCEEEEecCCC---
Confidence 345677888999998876532 112222 22 2367999999875332233444433 4678999886531
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCc------------------------ChhHHHHHHH
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK------------------------ASNEIEEGLS 198 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~------------------------~~~~L~~~L~ 198 (301)
. ++..........+..+++.|.+. ..++|+++.+.. ...-+.+.++
T Consensus 91 --~------~~~~v~~d~~~~g~~~~~~L~~~--g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~gf~~~~~ 160 (283)
T cd06279 91 --P------GVPSVGIDDRAAAREAARHLLDL--GHRRIGILGLRLGRDRNTGRVTDERLASATFSVARERLEGYLEALE 160 (283)
T ss_pred --C------CCCEEeeCcHHHHHHHHHHHHHc--CCCcEEEecCcccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 2 32221222223455566667654 346888886642 1234667788
Q ss_pred hCCCeeEEEeeeeeeeCC-CCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 199 NRGFEVVRLNTYTTEPVH-HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 199 ~~G~~v~~~~vY~~~~~~-~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
++|.......+|...... ....+..+. + ..+++|+.++-..+....+.+.+.+. .++.+++++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~gv~~al~~~g~~ip~di~vig~d~~ 233 (283)
T cd06279 161 EAGIDISDVPIWEIPENDRASGEEAARELLDASPRPTAILCMSDVLALGALQVARELGLRVPEDLSVVGFDGI 233 (283)
T ss_pred HcCCCCChheEEecCCCchHHHHHHHHHHHcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEeeeCCC
Confidence 888655443444321111 111122222 2 35788888888877777777766542 36778888754
No 53
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=95.42 E-value=0.55 Score=41.55 Aligned_cols=180 Identities=12% Similarity=0.064 Sum_probs=98.6
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
..+.+.++++|++++..+.-... ...+.+...+ .-...|+||+++...-...++.+.+ .+++++++|...
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~~--~~~~~~~~~l-~~~~vdgvi~~~~~~~~~~~~~l~~---~~iPvv~~~~~~---- 88 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSLA--RLKRYLESTT-LAYLTDGLLLASYDLTERLAERRLP---TERPVVLVDAEN---- 88 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCcH--HHHHHHHHHH-HhcCCCEEEEecCccChHHHHHHhh---cCCCEEEEccCC----
Confidence 45667788899998876432110 0111222222 2357999999985432333444433 468899998642
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------------hhHHHHHHHhCCCeeEEEee
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------------SNEIEEGLSNRGFEVVRLNT 209 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------------~~~L~~~L~~~G~~v~~~~v 209 (301)
- ++..........+...++.|.+. .++++++.+... ..-+.+.+++.|..+....+
T Consensus 89 --~------~~~~v~~d~~~~g~~a~~~L~~~---~~~i~~i~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~ 157 (269)
T cd06297 89 --P------RFDSFYLDNRLGGRLAGAYLADF---PGRIGAITVEEEPDRAFRRTVFAERRAGFQQALKDAGRPFSPDLL 157 (269)
T ss_pred --C------CCCEEEECcHHHHHHHHHHHHHh---CCceEEEeCccccccccccccHHHHHHHHHHHHHHcCCCCChhhE
Confidence 1 22222222223345555666554 267777755321 23356677788876543223
Q ss_pred eeeeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 210 YTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 210 Y~~~~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
+..........+.... + .++++|+..+-..+-.+++.+.+.+. .++.+++++..
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vP~di~vvg~d~~ 218 (269)
T cd06297 158 AITDHSEEGGRLAMRHLLEKASPPLAVFASADQQALGALQEAVELGLTVGEDVRVVGFDDH 218 (269)
T ss_pred EeCCCChhhHHHHHHHHHcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECCc
Confidence 3221111111112222 2 35799999998888888888876652 36778888665
No 54
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=95.38 E-value=0.56 Score=41.44 Aligned_cols=182 Identities=10% Similarity=0.011 Sum_probs=95.4
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|+++..+..- ...+.....+.++. ..+.|+||+.... .+...++.+.+ .+++++.+|....
T Consensus 20 gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 93 (275)
T cd06320 20 GYENEAKKLGVSVDIQAAP---SEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKK---KGIPVVNVNDKLI 93 (275)
T ss_pred HHHHHHHHhCCeEEEEccC---CCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHH---CCCeEEEECCCCC
Confidence 4556778889887754322 11121111122222 2468999886532 23334455544 4788999986531
Q ss_pred HHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhC-CCeeEEEeeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVVRLNTYT 211 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~-G~~v~~~~vY~ 211 (301)
. . ............++.+++.|.+.....++++++.+... ..-+.+.++++ |.++.....+.
T Consensus 94 ~----~------~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~ 163 (275)
T cd06320 94 P----N------ATAFVGTDNKANGVRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPAD 163 (275)
T ss_pred C----c------cceEEecCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCCC
Confidence 1 1 11111122222355566666554223468998876432 24477788888 87654321111
Q ss_pred eeeCCCCcH-H---HHHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHH
Q 022176 212 TEPVHHVDQ-T---VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (301)
Q Consensus 212 ~~~~~~~~~-~---~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~ 263 (301)
....... . +++...++++|+..+-..+..+++.+.+.+. .++.+++.+..
T Consensus 164 --~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~~di~vig~d~~ 218 (275)
T cd06320 164 --WDREKAYDVATTILQRNPDLKAIYCNNDTMALGVVEAVKNAGKQGKVLVVGTDGI 218 (275)
T ss_pred --ccHHHHHHHHHHHHHhCCCccEEEECCchhHHHHHHHHHhcCCCCCeEEEecCCC
Confidence 1111111 1 1222246889999888888888887766543 25566666443
No 55
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.31 E-value=0.39 Score=42.20 Aligned_cols=206 Identities=11% Similarity=0.019 Sum_probs=106.8
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.+++.|+++.....-. +.+...+.++. -..+|+||+++...-...++.+. ..+++++++|.....
T Consensus 20 gi~~~~~~~g~~~~~~~~~~-----~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~---~~~ipvV~i~~~~~~- 90 (270)
T cd06296 20 GVEEAAAAAGYDVVLSESGR-----RTSPERQWVERLSARRTDGVILVTPELTSAQRAALR---RTGIPFVVVDPAGDP- 90 (270)
T ss_pred HHHHHHHHcCCeEEEecCCC-----chHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHh---cCCCCEEEEecccCC-
Confidence 44556778898876543321 11111222222 25799999987643222233332 357899999865311
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++.. +.++. ..++...+.|.+. ..++++++.+.... .-+.+.+++.|..+....++...
T Consensus 91 --~~------~~~~-v~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~ 159 (270)
T cd06296 91 --DA------DVPS-VGATNWAGGLAATEHLLEL--GHRRIGFITGPPDLLCSRARLDGYRAALAEAGIPVDPALVREGD 159 (270)
T ss_pred --CC------CCCE-EEeCcHHHHHHHHHHHHHc--CCCcEEEEcCCCcchhHHHHHHHHHHHHHHcCCCCChHHheeCC
Confidence 01 2211 12222 2345555666554 34689988775432 34566777777655322222211
Q ss_pred eCCCCcHHHHHH----cCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeeEecCCCCHHH
Q 022176 214 PVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 286 (301)
Q Consensus 214 ~~~~~~~~~~~~----~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ 286 (301)
..........+. ...+++|+..|...+..+++.+.+.+. .++.+++++..- .+..++.....+. .+.+.
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~~i~v~~~d~~~--~~~~~~~~~~~i~--~~~~~ 235 (270)
T cd06296 160 FSTESGFRAAAELLALPERPTAIFAGNDLMALGVYEAARERGLRIPEDLSVVGFDDLP--EARWVSPPLTTVR--QPLRE 235 (270)
T ss_pred CCHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCCCceEEEEECChh--hhcccCCCceEec--CCHHH
Confidence 111111111222 246899999999988888888877653 366777776542 2333333322222 34555
Q ss_pred HHHHHHH
Q 022176 287 WVDSILE 293 (301)
Q Consensus 287 ll~ai~~ 293 (301)
+.+...+
T Consensus 236 ~g~~a~~ 242 (270)
T cd06296 236 MGRAAVR 242 (270)
T ss_pred HHHHHHH
Confidence 5554444
No 56
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.30 E-value=0.69 Score=37.32 Aligned_cols=113 Identities=20% Similarity=0.220 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCCch-----HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh-----HHHHHHH
Q 022176 49 SNPKVVVTRERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (301)
Q Consensus 49 ~g~~IlitR~~~~~-----~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~-----~av~~f~ 118 (301)
++++||+.-+..+. .-++..|+.+|++|+++-.-... +++.+...+ .+.|.|.+.+. ..++.+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~-----e~i~~~a~~-~~~d~V~lS~~~~~~~~~~~~~~ 75 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQ-----EEFIDAAIE-TDADAILVSSLYGHGEIDCRGLR 75 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCH-----HHHHHHHHH-cCCCEEEEcCccccCHHHHHHHH
Confidence 46777776555432 35567889999999987653321 344444423 46777766553 3445566
Q ss_pred HHHHHcCCCCceEEEEchhh---------HHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccC
Q 022176 119 EAWKEAGTPNVRIGVVGAGT---------ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (301)
Q Consensus 119 ~~l~~~~~~~~~i~avG~~T---------a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~ 174 (301)
+.+++.+.+++++++-|.-+ .+.++++ |+...|.|.. ..+..+..|.+.
T Consensus 76 ~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~------G~~~vf~~~~-~~~~i~~~l~~~ 133 (137)
T PRK02261 76 EKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEM------GFDRVFPPGT-DPEEAIDDLKKD 133 (137)
T ss_pred HHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHc------CCCEEECcCC-CHHHHHHHHHHH
Confidence 67777767788888888642 2478888 9988776654 566666776553
No 57
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=95.30 E-value=1.4 Score=38.07 Aligned_cols=179 Identities=11% Similarity=0.058 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++...+. ..+.+...+.++. -.++|.|++.....-...++.+.+ .+++++.++.....
T Consensus 20 g~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~~~~~~~---~~ipvv~~~~~~~~- 90 (264)
T cd06267 20 GIEEAAREAGYSVLLCNS-----DEDPEKEREALELLLSRRVDGIILAPSRLDDELLEELAA---LGIPVVLVDRPLDG- 90 (264)
T ss_pred HHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCcCEEEEecCCcchHHHHHHHH---cCCCEEEecccccC-
Confidence 445556677887765432 1121111122212 257999998766533221333433 47888888865422
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
. .+...-......+..+++.|.+. ..++++++.+... ...+.+.+++.|..+.....+....
T Consensus 91 ---~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (264)
T cd06267 91 ---L------GVDSVGIDNRAGAYLAVEHLIEL--GHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDF 159 (264)
T ss_pred ---C------CCCEEeeccHHHHHHHHHHHHHC--CCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEeccc
Confidence 2 22221111222344455666554 3468998876644 2346677777775443222222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECH
Q 022176 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (301)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~ 262 (301)
........... + ..+|+|+.++...+..+...+.+.+. .++.+++++-
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~~~g~~~~~~i~i~~~d~ 214 (264)
T cd06267 160 SEESGYEAARELLASGERPTAIFAANDLMAIGALRALRELGLRVPEDVSVVGFDD 214 (264)
T ss_pred chhhHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHHhCCCCCCceEEEeeCC
Confidence 11111111111 2 34889998887777777777665542 2456666653
No 58
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=95.27 E-value=0.58 Score=41.23 Aligned_cols=183 Identities=15% Similarity=0.122 Sum_probs=97.2
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
..+.+.++++|+++..+..-. ..+.+...+.++. ....|+||+.+... ....++.+.. .+++++.++...
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 92 (273)
T cd06310 19 AGAEAAAKELGVKVTFQGPAS---ETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKD---AGIPVVLIDSGL 92 (273)
T ss_pred HHHHHHHHHcCCEEEEecCcc---CCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHHH---CCCCEEEecCCC
Confidence 345567788898887653211 1122222222222 25799999976542 1223343433 468898887542
Q ss_pred HHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhC-CCeeEEEee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNT 209 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~-G~~v~~~~v 209 (301)
.. .. .+.. +..+. ..+..+++.|.+.....++++++.+.... ..+.+.++++ |..+.. .
T Consensus 93 ~~---~~------~~~~-v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~~~--~ 160 (273)
T cd06310 93 NS---DI------AVSF-VATDNVAAGKLAAEALAELLGKKGKVAVISFVPGSSTTDQREEGFLEGLKEYPGIEIVA--T 160 (273)
T ss_pred CC---Cc------ceEE-EeeChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEe--c
Confidence 11 12 2222 12222 23455666665542234689998765431 3456778887 766533 2
Q ss_pred eeeeeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHH
Q 022176 210 YTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (301)
Q Consensus 210 Y~~~~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~ 263 (301)
+..........+.... + ..+++|++.|...+..+++.+.+.+. .++.+++++..
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~~l~~~g~~~di~vig~d~~ 219 (273)
T cd06310 161 QYSDSDYAKALDITEDLLTANPDLKGIFGANEGSAVGAARAVRQAGKAGKVKVVGFDAS 219 (273)
T ss_pred ccCCcCHHHHHHHHHHHHHhCCCceEEEecCchhHHHHHHHHHhcCCCCCeEEEEeCCC
Confidence 2111110111112211 2 35899999999988888888776553 26677777654
No 59
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=95.24 E-value=1.7 Score=37.99 Aligned_cols=181 Identities=13% Similarity=0.053 Sum_probs=93.9
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|++++.++. . .+.+...+.++. -.++|.||+.+... ....++.+.+ .+++++.++..-.
T Consensus 20 ~i~~~~~~~g~~v~~~~~---~--~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~---~~ipvv~~~~~~~ 91 (268)
T cd06323 20 GAQKEAKELGYELTVLDA---Q--NDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANE---AGIPVFTIDREAN 91 (268)
T ss_pred HHHHHHHHcCceEEecCC---C--CCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH---CCCcEEEEccCCC
Confidence 455677788988875433 1 122222222322 24799999976432 2334454544 4688998876421
Q ss_pred HHHHHHhhcccCCCceeecCCCC-cHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhC-CCeeEEEeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVVRLNTY 210 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~-G~~v~~~~vY 210 (301)
. .. .+.. +..+.+ .+..+++.|.+.....++++++.+... ...+.+.|+++ |..+.....+
T Consensus 92 ~---~~------~~~~-v~~d~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~ 161 (268)
T cd06323 92 G---GE------VVSQ-IASDNVAGGKMAAEYLVKLLGGKGKVVELQGIPGASAARERGKGFHEVVDKYPGLKVVASQPA 161 (268)
T ss_pred C---Cc------eEEE-EccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEecccC
Confidence 0 00 1111 222222 245566666654223468888866432 23455677774 6654321111
Q ss_pred eeeeCCCCc-HHHHH---HcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHH
Q 022176 211 TTEPVHHVD-QTVLK---QALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETT 264 (301)
Q Consensus 211 ~~~~~~~~~-~~~~~---~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~T 264 (301)
.. ..... ..+.+ ...++++|+.++...+...++.+.+.+..++.+++++...
T Consensus 162 ~~--~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~di~iig~d~~~ 217 (268)
T cd06323 162 DF--DRAKGLNVMENILQAHPDIKGVFAQNDEMALGAIEALKAAGKDDVKVVGFDGTP 217 (268)
T ss_pred CC--CHHHHHHHHHHHHHHCCCcCEEEEcCCchHHHHHHHHHHcCCCCcEEEEeCCCH
Confidence 11 00111 11111 1235889999998888777777766543356777776643
No 60
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=95.23 E-value=0.94 Score=41.53 Aligned_cols=179 Identities=12% Similarity=0.103 Sum_probs=95.4
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a-v~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
+.+.++++|+.+...+. . .+.+...+.++. -..+|+||+.+... ....++.+.+ .+++++.++...
T Consensus 86 i~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~~~~~~--- 154 (342)
T PRK10014 86 LTEALEAQGRMVFLLQG---G--KDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEE---KGIPVVFASRAS--- 154 (342)
T ss_pred HHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhh---cCCCEEEEecCC---
Confidence 44667788987764321 1 122222222222 25799999986542 2333444433 467888887642
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
... ++.. +..+. ..+..+++.|.+. ..++|+++.|.... .-+.+.|++.|..+....++...
T Consensus 155 -~~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 224 (342)
T PRK10014 155 -YLD------DVDT-VRPDNMQAAQLLTEHLIRN--GHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECT 224 (342)
T ss_pred -CCC------CCCE-EEeCCHHHHHHHHHHHHHC--CCCEEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecCC
Confidence 111 3222 12222 2345556666654 34689999775431 24677888888765432222211
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---C---------CceEEEECHHH
Q 022176 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---W---------SNSVACIGETT 264 (301)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~---------~~~i~aIG~~T 264 (301)
............ + ..+++|+..+-..+-.+++.+.+.+. . ++.+++++...
T Consensus 225 ~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~~l~~~g~~vp~~~~~~~~p~di~vigfd~~~ 291 (342)
T PRK10014 225 SSQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLRAGRQSGESGVDRYFEQQVALAAFTDVP 291 (342)
T ss_pred CChHHHHHHHHHHHcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCccccccccCceEEEEecCch
Confidence 111111111222 2 35899999998888777777665432 2 56777776653
No 61
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=95.21 E-value=1.1 Score=39.32 Aligned_cols=181 Identities=9% Similarity=0.023 Sum_probs=95.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.+++.|+++...+ .. .+.+...+.++. -...|+||+++...-......+.. ..+++++.+|....
T Consensus 20 gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~--~~~ipvV~i~~~~~-- 90 (269)
T cd06275 20 GVEQYCYRQGYNLILCN---TE--GDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLER--YRHIPMVVMDWGPE-- 90 (269)
T ss_pred HHHHHHHHcCCEEEEEe---CC--CChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHh--cCCCCEEEEecccC--
Confidence 34456677898886432 11 122222222222 257899999875422222233322 24789999987532
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
.. ++..........++.+++.|.+. ..++|+++.+.... .-+.+.++++|.++.....+....
T Consensus 91 --~~------~~~~V~~d~~~~~~~~~~~l~~~--G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~ 160 (269)
T cd06275 91 --DD------FADKIQDNSEEGGYLATRHLIEL--GHRRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGDF 160 (269)
T ss_pred --CC------CCCeEeeCcHHHHHHHHHHHHHC--CCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccCCC
Confidence 11 22211111122345555666654 34789988765431 345677778876643221221111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
......+..+. + ..+++|+.++...+..+++.+.+.+. .++.+++++..
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vvg~d~~ 216 (269)
T cd06275 161 ECEGGYEAMQRLLAQPKRPTAVFCGNDLMAMGALCAAQEAGLRVPQDLSIIGYDDI 216 (269)
T ss_pred ChHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCCCCcceEEEEeCCh
Confidence 11111112222 2 25799999998888888888876553 36678888653
No 62
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=95.19 E-value=0.58 Score=40.88 Aligned_cols=177 Identities=11% Similarity=0.029 Sum_probs=94.8
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a-v~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
.+.+.++++|+++...+. .. +.+...+.++. -..+|+||+.+.+. ...+++.+.+ .+++++.++....
T Consensus 20 ~i~~~~~~~g~~~~~~~~---~~--~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~- 90 (266)
T cd06282 20 GIQEEARAAGYSLLLATT---DY--DAEREADAVETLLRQRVDGLILTVADAATSPALDLLDA---ERVPYVLAYNDPQ- 90 (266)
T ss_pred HHHHHHHHCCCEEEEeeC---CC--CHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhh---CCCCEEEEeccCC-
Confidence 445677888999887643 11 21111122222 25799999876542 1224454443 4678888875431
Q ss_pred HHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC--------hhHHHHHHHhCCCeeEEEeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYT 211 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~ 211 (301)
. ++.. +.... ..+..+++.|.+. ..++|+++.+... ..-+.+.|+++|.++.....+.
T Consensus 91 ----~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~ 157 (266)
T cd06282 91 ----P------GRPS-VSVDNRAAARDVAQALAAL--GHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPLPPVEIP 157 (266)
T ss_pred ----C------CCCE-EeeCcHHHHHHHHHHHHHc--CcccEEEeccccccCchHHHHHHHHHHHHHHcCCCCCccccCC
Confidence 2 2222 12222 2345566666654 3468888865321 1335567778886543322111
Q ss_pred eeeCCCCcHHHHHHc---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 212 TEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 212 ~~~~~~~~~~~~~~~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.. .....+.+.+.+ ..+|+|+.++...+..+++.+.+.+. .++.+++.+..
T Consensus 158 ~~-~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p~di~v~g~d~~ 214 (266)
T cd06282 158 FN-TAALPSALLALLTAHPAPTAIFCSNDLLALAVIRALRRLGLRVPDDLSVVGFDGI 214 (266)
T ss_pred Cc-HHHHHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeecch
Confidence 11 010011122112 35799999998888888888877653 25667777654
No 63
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.16 E-value=0.4 Score=41.94 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=95.1
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCc-hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~-~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
.+.+.++++|+++..+..-. ..+. +.++..+ -.+.|.||+.+.......++.+.+ .+++++.+|..+..
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~---~~~~~~~i~~~~--~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~-- 89 (266)
T cd06278 20 ALSRALQARGYQPLLINTDD---DEDLDAALRQLL--QYRVDGVIVTSGTLSSELAEECRR---NGIPVVLINRYVDG-- 89 (266)
T ss_pred HHHHHHHHCCCeEEEEcCCC---CHHHHHHHHHHH--HcCCCEEEEecCCCCHHHHHHHhh---cCCCEEEECCccCC--
Confidence 45677888999887554321 1111 1222222 257999998764322222444433 47889999875421
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeeeC
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (301)
. .+..........+..+++.|.+. ..++|+++.+... ...+.+.+++.|..+.. ..+ .
T Consensus 90 --~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~-~~~----~ 154 (266)
T cd06278 90 --P------GVDAVCSDNYEAGRLAAELLLAK--GCRRIAFIGGPADTSTSRERERGFRDALAAAGVPVVV-EEA----G 154 (266)
T ss_pred --C------CCCEEEEChHHHHHHHHHHHHHC--CCceEEEEcCCCcccchHHHHHHHHHHHHHcCCChhh-hcc----C
Confidence 1 22211111223355566667654 3468999987644 23466777778765321 111 1
Q ss_pred CCCcH----HHHHHc---CCCCEEEEEChHHHHHHHHhhhccc-C---CCceEEEECHH
Q 022176 216 HHVDQ----TVLKQA---LSIPVVAVASPSAVRSWVNLISDTE-Q---WSNSVACIGET 263 (301)
Q Consensus 216 ~~~~~----~~~~~~---~~~d~I~ftS~sav~~~~~~l~~~~-~---~~~~i~aIG~~ 263 (301)
....+ .+.+.+ ..+++|+.++...+...++.+++.+ . .++.+++++..
T Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~l~~~~~~~~p~di~i~~~d~~ 213 (266)
T cd06278 155 DYSYEGGYEAARRLLASRPRPDAIFCANDLLAIGVMDAARQEGGLRVPEDVSVIGFDDI 213 (266)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHhcCCCCccceEEEEeCCh
Confidence 11111 111112 3589999999888777777776532 1 25677777654
No 64
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=95.14 E-value=0.77 Score=41.16 Aligned_cols=186 Identities=10% Similarity=0.019 Sum_probs=93.1
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
+.+.+++.|++++.+.. .. .+.+...+.+.. -...|.||+.+.. .....++.+.+ .+++++.++....
T Consensus 21 i~~~a~~~g~~~~~~~~--~~--~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~~- 92 (294)
T cd06316 21 AKDEFAKLGIEVVATTD--AQ--FDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAE---AGIKLVFMDNVPS- 92 (294)
T ss_pred HHHHHHHcCCEEEEecC--CC--CCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHH---cCCcEEEecCCCc-
Confidence 45667888988874311 11 111111122222 2578999885532 23444555544 4678888886431
Q ss_pred HHHHHhhcccCCCceeecCC-CCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~-~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.....- ++......+ ...+..+++.|.+.....+++.++.+... ..-+.+.|++++..+..+.....
T Consensus 93 ~~~~~~-----~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~ 167 (294)
T cd06316 93 GLEHGK-----DYAGIVTDDNYGNGQIAADALAKALPGKGKVGLIYHGADYFVTNQRDQGFKETIKKNYPDITIVAEKGI 167 (294)
T ss_pred ccccCc-----ceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCcccHHHHHHHHHHHHHHhCCCcEEEeecCC
Confidence 111100 111111122 22234455555543223478988876543 23455566655532222211110
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHH
Q 022176 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETT 264 (301)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~T 264 (301)
.......+..+. + .++++|+.+|-..+...++.+.+.+..++.++++|..+
T Consensus 168 -~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~di~vvg~d~~~ 222 (294)
T cd06316 168 -DGPSKAEDIANAMLTQNPDLKGIYAVWDVPAEGVIAALRAAGRDDIKVTTVDLGL 222 (294)
T ss_pred -cchhHHHHHHHHHHHhCCCeeEEEeCCCchhHHHHHHHHHcCCCCceEEEeCCCc
Confidence 001111111222 2 35788988888888888888877654467888887543
No 65
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=95.12 E-value=1.7 Score=36.43 Aligned_cols=132 Identities=18% Similarity=0.209 Sum_probs=82.8
Q ss_pred CCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEE
Q 022176 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (301)
Q Consensus 127 ~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~ 206 (301)
.+..++.-.-.|+..|++++ ++++.-+ ..+..++++.|.+....+.+|.++.....-..+
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-----~iPVV~I--~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~------------- 92 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-----SIPVVEI--PISGFDILRALAKAKKYGPKIAVVGYPNIIPGL------------- 92 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC------SS-EEEE-----HHHHHHHHHHCCCCTSEEEEEEESS-SCCH-------------
T ss_pred cCCeEEEECCHHHHHHHHhC-----CCCEEEE--CCCHhHHHHHHHHHHhcCCcEEEEecccccHHH-------------
Confidence 46667666667999999985 7776555 457888888887655555677666554432211
Q ss_pred EeeeeeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHH
Q 022176 207 LNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLE 285 (301)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~~-~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e 285 (301)
..+.+.+ -++....|+|+..++..+..+... ++.++.=|..+.+.++++|++.+.+ ..+.+
T Consensus 93 -------------~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~---G~~viVGg~~~~~~A~~~gl~~v~i--~sg~e 154 (176)
T PF06506_consen 93 -------------ESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE---GVDVIVGGGVVCRLARKLGLPGVLI--ESGEE 154 (176)
T ss_dssp -------------HHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT---T--EEEESHHHHHHHHHTTSEEEES--S--HH
T ss_pred -------------HHHHHHhCCceEEEEECCHHHHHHHHHHHHHc---CCcEEECCHHHHHHHHHcCCcEEEE--EecHH
Confidence 1111112 144556667777777777777654 4778878889999999999987554 45799
Q ss_pred HHHHHHHHHHH
Q 022176 286 GWVDSILEALR 296 (301)
Q Consensus 286 ~ll~ai~~~~~ 296 (301)
++-++|.++++
T Consensus 155 si~~Al~eA~~ 165 (176)
T PF06506_consen 155 SIRRALEEALR 165 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988763
No 66
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=95.10 E-value=0.89 Score=39.82 Aligned_cols=184 Identities=11% Similarity=0.078 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a-v~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
..+.+.++++|+++.....-.-.. .....+.+.+ .....|.||+++.+. ....++.+.+ .+++++.+|.....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~l-~~~~vdgiii~~~~~~~~~~~~~~~~---~~ipvv~i~~~~~~- 92 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSP-DLAERVRALL-QRSRVDGVILTPPLSDNPELLDLLDE---AGVPYVRIAPGTPD- 92 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCch-HHHHHHHHHH-HHCCCCEEEEeCCCCCccHHHHHHHh---cCCCEEEEecCCCC-
Confidence 345567778898887654321110 0011222222 225789999987642 2233444433 46899999865311
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
. .+..........+...++.|.+. ..++++++.+.... .-+.+.+++.|..+.....+....
T Consensus 93 ---~------~~~~V~~d~~~~g~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~ 161 (270)
T cd01545 93 ---P------DSPCVRIDDRAAAREMTRHLIDL--GHRRIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQGDF 161 (270)
T ss_pred ---C------CCCeEEeccHHHHHHHHHHHHHC--CCceEEEEeCCCCchhHHHHHHHHHHHHHHcCCCCChhhEEeCCC
Confidence 1 22111122222344455566554 35788888765542 224556677776552211221111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
......+..+. + .++++|+.++...+..+++.+.+.+. .++.+++++..
T Consensus 162 ~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~~~~~~~~~~g~~~p~~i~vig~d~~ 217 (270)
T cd01545 162 TFESGLEAAEALLALPDRPTAIFASNDDMAAGVLAVAHRRGLRVPDDLSVVGFDDT 217 (270)
T ss_pred ChhhHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECCh
Confidence 11111111222 2 35899999888888888888776542 25666766664
No 67
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.92 E-value=1.2 Score=39.25 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=96.7
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC-chHHHHHHhcCCCccEEEEeChH-----HHHHHHHHHHHcCCCCceEEEEch
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d-~~~l~~~l~~l~~~d~IiftS~~-----av~~f~~~l~~~~~~~~~i~avG~ 136 (301)
..+.+.+++.|+++...+.. ..++ ..++.+.+. -...|+||+++.. +....++.+.+ .+++++++|.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~~~~~i~~~~~---~~ipvV~i~~ 91 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTY---RGGVSEADYVEDLL-ARGVRGVVFISSLHADTHADHSHYERLAE---RGLPVVLVNG 91 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHH-HcCCCEEEEeCCCCCcccchhHHHHHHHh---CCCCEEEEcC
Confidence 45566777899887643221 1111 112222221 2578999987632 22223344433 4789999987
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNT 209 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~v 209 (301)
.... .. .+..........+..+++.|.+. ..++++++.+... ...+.+.++++|..+....+
T Consensus 92 ~~~~---~~------~~~~V~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i 160 (273)
T cd06292 92 RAPP---PL------KVPHVSTDDALAMRLAVRHLVAL--GHRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALV 160 (273)
T ss_pred CCCC---CC------CCCEEEECcHHHHHHHHHHHHHC--CCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhe
Confidence 5321 11 23222222223345565666654 3468888876532 23456677778754322222
Q ss_pred eeeeeCCCCcHHHHHH-c-CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 210 YTTEPVHHVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 210 Y~~~~~~~~~~~~~~~-~-~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
+..........+..+. + ..+++|+..+...+..+++.+.+.+. .++.+++++..-
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~a~g~~~~l~~~g~~ip~di~ii~~d~~~ 220 (273)
T cd06292 161 ARGMFSVEGGQAAAVELLGSGPTAIVAASDLMALGAIRAARRRGLRVPEDVSVVGYDDSA 220 (273)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeeCCch
Confidence 2111111111122222 2 23899998888888888887776553 367788887543
No 68
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.88 E-value=0.58 Score=41.07 Aligned_cols=203 Identities=8% Similarity=0.016 Sum_probs=106.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+...+++.|++++.+.. . .+.+.....++. -...|.||+++...-..... +.. .+++++.+|....
T Consensus 19 ~~i~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~-~~~---~~iPvV~~~~~~~- 88 (263)
T cd06280 19 RAVEDAAYRAGLRVILCNT---D--EDPEKEAMYLELMEEERVTGVIFAPTRATLRRLA-ELR---LSFPVVLIDRAGP- 88 (263)
T ss_pred HHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCchHHH-HHh---cCCCEEEECCCCC-
Confidence 3455778889988864321 1 122222222212 35689999988653322222 222 3688999987642
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
.. .+..........+..+++.|.+. ..+++.++.+... ...+.+.+.++|.......+ ..
T Consensus 89 ---~~------~~~~v~~d~~~~g~~a~~~L~~~--g~~~i~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~---~~ 154 (263)
T cd06280 89 ---AG------RVDAVVLDNRAAARTLVEHLVAQ--GYRRIGGLFGNASTTGAERRAGYEDAMRRHGLAPDARFV---AP 154 (263)
T ss_pred ---CC------CCCEEEECcHHHHHHHHHHHHHC--CCceEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCChhhc---cc
Confidence 11 23322222223455566667654 2368888866532 23456677777765432111 01
Q ss_pred CCCCc-HHHHHHc---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHH
Q 022176 215 VHHVD-QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGW 287 (301)
Q Consensus 215 ~~~~~-~~~~~~~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~l 287 (301)
..... +.+.+.+ ..+++|+.++...+..+++.+.+.+. .++.+++++......+-.-++.. + ..+.+.|
T Consensus 155 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~~~~~~~~p~lt~--i--~~~~~~~ 230 (263)
T cd06280 155 TAEAAEAALAAWLAAPERPEALVASNGLLLLGALRAVRAAGLRIPQDLALAGFDNDPWTELVGPGITV--I--EQPVEEI 230 (263)
T ss_pred CHHHHHHHHHHHhcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCcEEEEEeCChhHHHhcCCCceE--e--cCCHHHH
Confidence 11111 1122222 35789999999988888888877653 36677777665433322223322 1 3456666
Q ss_pred HHHHHH
Q 022176 288 VDSILE 293 (301)
Q Consensus 288 l~ai~~ 293 (301)
.+...+
T Consensus 231 g~~a~~ 236 (263)
T cd06280 231 GRAAMS 236 (263)
T ss_pred HHHHHH
Confidence 554433
No 69
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=94.71 E-value=1.2 Score=40.85 Aligned_cols=181 Identities=10% Similarity=0.028 Sum_probs=97.1
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|++++.++.. .+.+...+.++. -...|+||+.....-...++.+.+ ..+++++.++....
T Consensus 80 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~--~~~iPvV~~d~~~~-- 150 (341)
T PRK10703 80 AVEKNCYQKGYTLILCNAW-----NNLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA-- 150 (341)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHh--cCCCCEEEEecccC--
Confidence 4455677789887755321 122222222222 257899988764322233344433 13678999985321
Q ss_pred HHHHhhcccCCCceeecCCCC-cHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++...+.++.+ .+...++.|.+.. .++|+++.+.... .-+.+.|+++|..+....++...
T Consensus 151 --~~------~~~~~v~~d~~~~g~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi~~~~~~~~~~~ 220 (341)
T PRK10703 151 --KA------DFTDAIIDNAFEGGYLAGRYLIERG--HRDIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIVQGD 220 (341)
T ss_pred --Cc------CCCCeEEECcHHHHHHHHHHHHHCC--CCcEEEEeCCccccchHHHHHHHHHHHHHcCCCCChHHeEeCC
Confidence 11 21111222322 3455666676542 4689988765431 34567788888765432222211
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.......+.++. + ..+|+|++++...+..+++.+.+.+. .++.+++++..
T Consensus 221 ~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~~ip~dv~vvgfD~~ 277 (341)
T PRK10703 221 FEPESGYEAMQQILSQKHRPTAVFCGGDIMAMGAICAADEMGLRVPQDISVIGYDNV 277 (341)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEECCC
Confidence 111111112222 2 35899999999988888888877652 36677888654
No 70
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=94.71 E-value=1.4 Score=38.69 Aligned_cols=157 Identities=16% Similarity=0.027 Sum_probs=84.8
Q ss_pred CCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCC
Q 022176 101 TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKK 177 (301)
Q Consensus 101 ~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~ 177 (301)
.+.|.||+.+.. .....++.+.+ .+++++.++..... . .+.. +..+. ..+..+++.|.+....
T Consensus 59 ~~vdgiIi~~~~~~~~~~~l~~~~~---~~iPvv~~~~~~~~----~------~~~~-v~~d~~~~g~~~~~~l~~~~~g 124 (272)
T cd06300 59 QGVDAIIINPASPTALNPVIEEACE---AGIPVVSFDGTVTT----P------CAYN-VNEDQAEFGKQGAEWLVKELGG 124 (272)
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHH---CCCeEEEEecCCCC----C------ceeE-ecCCHHHHHHHHHHHHHHHcCC
Confidence 589999997643 33433444444 47889988754211 1 2111 22222 2345566666554323
Q ss_pred CCEEEEEcCCcC-------hhHHHHHHHhCC-CeeEEEeeeeeeeCCCCcH---HHHHH-c---CCCCEEEEEChHHHHH
Q 022176 178 KCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRS 242 (301)
Q Consensus 178 ~~~vLi~rg~~~-------~~~L~~~L~~~G-~~v~~~~vY~~~~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~ 242 (301)
.++++++.|... ...+.+.+.++| .++.. ++. .+...+ +.... + .++++|+..+.. +-.
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~-A~g 198 (272)
T cd06300 125 KGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIVG--EVY---GDWDQAVAQKAVADFLASNPDVDGIWTQGGD-AVG 198 (272)
T ss_pred CceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEEe--ecC---CCCCHHHHHHHHHHHHHhCCCcCEEEecCCC-cHH
Confidence 468998876432 234677787777 65532 111 122211 11222 2 357999999888 777
Q ss_pred HHHhhhcccCCCceEEEECHHHHHH---HHHcCCCeeE
Q 022176 243 WVNLISDTEQWSNSVACIGETTASA---AKRLGLKNVY 277 (301)
Q Consensus 243 ~~~~l~~~~~~~~~i~aIG~~Ta~a---l~~~G~~~~~ 277 (301)
+++.+.+.+.....+++++...... +..-++..+.
T Consensus 199 ~~~al~~~g~~~p~v~g~d~~~~~~~~~~~~~~ltti~ 236 (272)
T cd06300 199 AVQAFEQAGRDIPPVTGEDENGFLRWRLWKDKGLKGIA 236 (272)
T ss_pred HHHHHHHcCCCCcEEEeeCCcHHHHHHhhhccCceeEE
Confidence 8888776554223566666554333 4444555433
No 71
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.70 E-value=1.2 Score=39.52 Aligned_cols=192 Identities=10% Similarity=0.039 Sum_probs=99.8
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|+++.....- .+.+...+.+.. -.+.|.||+.+.. .....++.+.+ .++|++.++....
T Consensus 20 gi~~~~~~~G~~~~~~~~~-----~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~~ 91 (272)
T cd06313 20 AADEAGKLLGVDVTWYGGA-----LDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIA---RGIPVIDMGTLIA 91 (272)
T ss_pred HHHHHHHHcCCEEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHH---CCCcEEEeCCCCC
Confidence 4556677899888865321 122222222322 2678999996542 22333444433 4789999987532
Q ss_pred HHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCC-CeeEEEeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTY 210 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G-~~v~~~~vY 210 (301)
.. .. +....+.++. ..++.+++.|.+.....++|+++.+... ...+.+.++++| ..+.. .+
T Consensus 92 ~~--~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~--~~ 161 (272)
T cd06313 92 PL--QI------NVHSFLAPDNYFMGASVAQALCNAMGGKGKIAMLQGALGHTGAQGRAQGFNDVIKKYPDIEVVD--EQ 161 (272)
T ss_pred CC--CC------ceEEEECCCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchhHHHHHHHHHHHhCCCCEEEe--cc
Confidence 10 11 2111122232 2345566666554223468999977532 345667777775 33322 11
Q ss_pred eeeeCCCCcHHH----HHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHH-HHHHcCC
Q 022176 211 TTEPVHHVDQTV----LKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTAS-AAKRLGL 273 (301)
Q Consensus 211 ~~~~~~~~~~~~----~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~-al~~~G~ 273 (301)
..........+. +....++++|+.+|-..+...++.++..+..++.++.++..-.. .+-..|.
T Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~~di~vvgfd~~~~~~~~~~~g~ 229 (272)
T cd06313 162 PANWDVSKAARIWETWLTKYPQLDGAFCHNDSMALAAYQIMKAAGRTKIVIGGVDGDPPAIQAVSDGR 229 (272)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHcCCCceEEEeecCCHHHHHHHHcCc
Confidence 111111111111 21123589999998888877777776654446777777655432 2333453
No 72
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=94.66 E-value=0.72 Score=40.34 Aligned_cols=193 Identities=12% Similarity=0.090 Sum_probs=106.8
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
..+.+.+++.|+++..+ .....|.+...+.+++ ..++|.||++.... ...+++.+.+ .+++++.+...
T Consensus 18 ~g~~~~a~~~g~~~~~~----~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~---~gIpvv~~d~~- 89 (257)
T PF13407_consen 18 KGAKAAAKELGYEVEIV----FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKA---AGIPVVTVDSD- 89 (257)
T ss_dssp HHHHHHHHHHTCEEEEE----EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHH---TTSEEEEESST-
T ss_pred HHHHHHHHHcCCEEEEe----CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhh---cCceEEEEecc-
Confidence 44566778889998877 1112232222223322 25799999775443 4556666665 46899998887
Q ss_pred HHHHHHHhhcccCCCceeecCC-CCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~-~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY 210 (301)
.... . .....+.++ ...+..+.+.+.+....+++|+++.+..+. +-+.+.|++.+ .+..+..|
T Consensus 90 -~~~~-~------~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~-~~~~~~~~ 160 (257)
T PF13407_consen 90 -EAPD-S------PRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDALKEYP-GVEIVDEY 160 (257)
T ss_dssp -HHTT-S------TSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHHCT-TEEEEEEE
T ss_pred -cccc-c------cceeeeeccHHHHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHHHhhcc-eeeeeeee
Confidence 1111 1 111212222 123455666665543344799988776653 34566777755 55555543
Q ss_pred eeeeCCCCcHH---HHHH-c--CCCCEEEEEChHHHHHHHHhhhcccCC-CceEEEE--CHHHHHHHHHcCCC
Q 022176 211 TTEPVHHVDQT---VLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQW-SNSVACI--GETTASAAKRLGLK 274 (301)
Q Consensus 211 ~~~~~~~~~~~---~~~~-~--~~~d~I~ftS~sav~~~~~~l~~~~~~-~~~i~aI--G~~Ta~al~~~G~~ 274 (301)
. ......+. .... + ..+++|+.++...+....+.+.+.+.. ...++++ .+.+.+.+++-.+.
T Consensus 161 ~--~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~g~~~al~~~g~~~~~~v~g~d~~~~~~~~i~~g~~~ 231 (257)
T PF13407_consen 161 E--YTDWDPEDARQAIENLLQANPVDAIIACNDGMALGAAQALQQAGRAGKVIVVGFDGSPEALEAIKDGNIT 231 (257)
T ss_dssp E--ECTTSHHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEEECHHHHHHHHHTTSSS
T ss_pred e--ccCCCHHHHHHHHHHhhhcCCceEEEeCCChHHHHHHHHHHHcCCcccceeecCCCCHHHHHHHHCCCCe
Confidence 3 22333222 1111 1 248899889888888888888776532 3335555 44555666554444
No 73
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=94.60 E-value=1.2 Score=35.81 Aligned_cols=101 Identities=17% Similarity=0.242 Sum_probs=65.1
Q ss_pred ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-----HHHHHHHhhhcccCCCceEEEEC
Q 022176 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSWVNLISDTEQWSNSVACIG 261 (301)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~s-----av~~~~~~l~~~~~~~~~i~aIG 261 (301)
+.+.+...|+.+|++|..+-+.. .++++.+.. .++|+|..+|-. ..+.+.+.+++.+..+..+++=|
T Consensus 17 Gk~iv~~~l~~~GfeVi~LG~~v------~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG 90 (134)
T TIGR01501 17 GNKILDHAFTNAGFNVVNLGVLS------PQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGG 90 (134)
T ss_pred hHHHHHHHHHHCCCEEEECCCCC------CHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecC
Confidence 45677888999999886665533 233444432 478888877633 34555666665544455555444
Q ss_pred -----H-H---HHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHH
Q 022176 262 -----E-T---TASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 262 -----~-~---Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
+ . ..+.++++|+..++-|. ...+.+++.|.+.++
T Consensus 91 ~~vi~~~d~~~~~~~l~~~Gv~~vF~pg-t~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 91 NLVVGKQDFPDVEKRFKEMGFDRVFAPG-TPPEVVIADLKKDLN 133 (134)
T ss_pred CcCcChhhhHHHHHHHHHcCCCEEECcC-CCHHHHHHHHHHHhc
Confidence 1 1 13468999999877444 478999999988764
No 74
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=94.45 E-value=1.8 Score=38.16 Aligned_cols=180 Identities=12% Similarity=0.073 Sum_probs=96.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHH-----HHHHHHHHHHcCCCCceEEEEch
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEA-----GSVFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~a-----v~~f~~~l~~~~~~~~~i~avG~ 136 (301)
.+.+.++++|+++..... ....+ .+.++..+ -...|+||+++... ...+++.+.+ .+++++.+|.
T Consensus 20 gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~--~~~vdgii~~~~~~~~~~~~~~~~~~~~~---~~ipvV~~~~ 91 (273)
T cd01541 20 GIESVLSEKGYSLLLAST---NNDPERERKCLENML--SQGIDGLIIEPTKSALPNPNIDLYLKLEK---LGIPYVFINA 91 (273)
T ss_pred HHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHH--HcCCCEEEEeccccccccccHHHHHHHHH---CCCCEEEEec
Confidence 456677888998875432 11111 12223322 25799999976432 2233444433 4688999986
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhCCCeeEEEeee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~vY 210 (301)
... .. ++..+.......+..+++.|.+.. .++++++.+... ...+.+.|++.|..+....++
T Consensus 92 ~~~----~~------~~~~V~~D~~~~g~~~~~~l~~~G--~~~i~~l~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~ 159 (273)
T cd01541 92 SYE----EL------NFPSLVLDDEKGGYKATEYLIELG--HRKIAGIFKADDLQGVKRMKGFIKAYREHGIPFNPSNVI 159 (273)
T ss_pred CCC----CC------CCCEEEECcHHHHHHHHHHHHHcC--CcCEEEecCCCcccHHHHHHHHHHHHHHcCCCCChHHEE
Confidence 531 11 222211222233455666676542 467877655322 123667788888654332222
Q ss_pred eeeeCCC--CcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 211 TTEPVHH--VDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 211 ~~~~~~~--~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
....... ...+..+. + ..+|+|+.+|-..+..+++.+.+.+. .++.+++++-.
T Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~av~~~~d~~a~g~~~al~~~g~~~p~dv~vvg~d~~ 221 (273)
T cd01541 160 TYTTEEKEEKLFEKIKEILKRPERPTAIVCYNDEIALRVIDLLKELGLKIPEDISVVGFDDS 221 (273)
T ss_pred eccccchhhHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCcEEEEEcCCc
Confidence 2111111 11122222 2 35899999999998888888876553 26677777543
No 75
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=94.44 E-value=1.5 Score=38.30 Aligned_cols=179 Identities=11% Similarity=0.043 Sum_probs=94.9
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|+++..+.. .. .+.....+.++. -...|+||+.+.+.-........ ..+++++++|....
T Consensus 19 ~gi~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~---~~~ipvv~~~~~~~- 90 (264)
T cd01574 19 AAIESAAREAGYAVTLSML---AE-ADEEALRAAVRRLLAQRVDGVIVNAPLDDADAALAAA---PADVPVVFVDGSPS- 90 (264)
T ss_pred HHHHHHHHHCCCeEEEEeC---CC-CchHHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHH---hcCCCEEEEeccCC-
Confidence 3455677788888775522 11 111111122222 25799999876543221122222 24689999987542
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
. .+..........+...++.|.+. ..++|+++.+.... ..+.+.+++.|..+... +...
T Consensus 91 ----~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~--~~~~ 156 (264)
T cd01574 91 ----P------RVSTVSVDQEGGARLATEHLLEL--GHRTIAHVAGPEEWLSARARLAGWRAALEAAGIAPPPV--LEGD 156 (264)
T ss_pred ----C------CCCEEEeCcHHHHHHHHHHHHHC--CCCEEEEEecCCccchHHHHHHHHHHHHHHCCCCccee--eecC
Confidence 2 22221122223355566666654 34789999776441 24677777777665321 1111
Q ss_pred eCCCCcHHHHHH-c--CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQTVLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~~~~~~-~--~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.......+..+. + ..+++|+.++...+..+++.+.+.+. .++.+++++..
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~~~~~~g~~ip~~i~ii~~d~~ 212 (264)
T cd01574 157 WSAESGYRAGRELLREGDPTAVFAANDQMALGVLRALHELGLRVPDDVSVVGFDDI 212 (264)
T ss_pred CCHHHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHcCCCCccceEEecccCc
Confidence 111111112222 1 23889998888888778777776542 36677777653
No 76
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.35 E-value=2.7 Score=36.81 Aligned_cols=179 Identities=9% Similarity=0.079 Sum_probs=95.7
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~-av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
.+.+.++++|+++...... .+.+...+.++. -..+|.||+++.. .-..+.+ +.. .+.+++++|....
T Consensus 20 gi~~~~~~~gy~v~~~~~~-----~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~-~~~---~~~pvV~i~~~~~- 89 (269)
T cd06293 20 AVEEEADARGLSLVLCATR-----NRPERELTYLRWLDTNHVDGLIFVTNRPDDGALAK-LIN---SYGNIVLVDEDVP- 89 (269)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHH-HHh---cCCCEEEECCCCC-
Confidence 4456778889888655322 111111222212 3579999997531 1122222 222 3689999996531
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. .+..........+...++.|.+. ..++++++.+... ..-+.+.++++|..+....++...
T Consensus 90 ---~~------~~~~V~~d~~~~~~~~~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~ 158 (269)
T cd06293 90 ---GA------KVPKVFCDNEQGGRLATRHLARA--GHRRIAFVGGPDALISARERYAGYREALAEAHIPEVPEYVCFGD 158 (269)
T ss_pred ---CC------CCCEEEECCHHHHHHHHHHHHHC--CCceEEEEecCcccccHHHHHHHHHHHHHHcCCCCChheEEecC
Confidence 11 22211222223345566666654 3468998876533 244677788888654332232211
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.......+.... + ..+++|+..+-..+...++.+.+.+. .++.+++++..
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~di~i~g~d~~ 215 (269)
T cd06293 159 YTREFGRAAAAQLLARGDPPTAIFAASDEIAIGLLEVLRERGLSIPGDMSLVGFDDV 215 (269)
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEeecCc
Confidence 111111112222 2 35799999998888777777776552 36788888764
No 77
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=94.32 E-value=0.99 Score=36.61 Aligned_cols=107 Identities=23% Similarity=0.387 Sum_probs=74.9
Q ss_pred CCCeEEEeCCC-----CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-----HHH
Q 022176 49 SNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-----VFL 118 (301)
Q Consensus 49 ~g~~IlitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~-----~f~ 118 (301)
+.+||++.... ..+.-++..|++.|++|++.++.++. + +.+..++ -++.|.|+..|-.+-. ...
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp---~-e~v~aA~--~~dv~vIgvSsl~g~h~~l~~~lv 84 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTP---E-EAVRAAV--EEDVDVIGVSSLDGGHLTLVPGLV 84 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCH---H-HHHHHHH--hcCCCEEEEEeccchHHHHHHHHH
Confidence 46788887654 25578889999999999999998765 1 3344444 3678899988877754 234
Q ss_pred HHHHHcCCCCceEEEE---chhhHHHHHHHhhcccCCCceeecCCCCcHHHH
Q 022176 119 EAWKEAGTPNVRIGVV---GAGTASIFEEVIQSSKCSLDVAFSPSKATGKIL 167 (301)
Q Consensus 119 ~~l~~~~~~~~~i~av---G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L 167 (301)
+.+.+.+.+++.+++= .+...+.|+++ |+.-.|.|...-.+.+
T Consensus 85 e~lre~G~~~i~v~~GGvip~~d~~~l~~~------G~~~if~pgt~~~~~~ 130 (143)
T COG2185 85 EALREAGVEDILVVVGGVIPPGDYQELKEM------GVDRIFGPGTPIEEAL 130 (143)
T ss_pred HHHHHhCCcceEEeecCccCchhHHHHHHh------CcceeeCCCCCHHHHH
Confidence 5666777777776653 34555668888 9988888865444443
No 78
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.23 E-value=2.8 Score=38.35 Aligned_cols=208 Identities=15% Similarity=0.118 Sum_probs=114.4
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCC-C--c-hHHHHHHhcCCCccEEEEeChH--------HH---
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGP-D--T-DRLSSVLNADTIFDWIIITSPE--------AG--- 114 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~-d--~-~~l~~~l~~l~~~d~IiftS~~--------av--- 114 (301)
|+++.|.-...+.-.+++.|.+.|++|...-+-+-.... . . ...++ .+.+.|.|++.-|- +.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHH---HhccCCEEEECCccccCCceeeccccc
Confidence 688999988888899999999999999973221111100 0 0 11122 24778999987442 11
Q ss_pred ------HHHHHHHHHcCCCCceEEEEc---hhhHHHHHHHhhcccCCCceeecCC---------CCcHHH-HHHHhccCC
Q 022176 115 ------SVFLEAWKEAGTPNVRIGVVG---AGTASIFEEVIQSSKCSLDVAFSPS---------KATGKI-LASELPKNG 175 (301)
Q Consensus 115 ------~~f~~~l~~~~~~~~~i~avG---~~Ta~~L~~~~~~~~~G~~~~~~p~---------~~~~e~-L~~~l~~~~ 175 (301)
..+++.+. +. .++.+| +...+.+++. |+++.-.++ ..+.++ +...+....
T Consensus 79 ~~~~~~~~~l~~l~----~~-~~v~~G~~~~~~~~~~~~~------gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~~ 147 (296)
T PRK08306 79 EKLVLTEELLELTP----EH-CTIFSGIANPYLKELAKET------NRKLVELFERDDVAILNSIPTAEGAIMMAIEHTP 147 (296)
T ss_pred cCCcchHHHHHhcC----CC-CEEEEecCCHHHHHHHHHC------CCeEEEEeccchhhhhccHhHHHHHHHHHHHhCC
Confidence 12222221 22 322234 4444555555 887742221 133444 333333322
Q ss_pred --CCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCC-----------CcHHHHHHcCCCCEEEEEChHHH--
Q 022176 176 --KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----------VDQTVLKQALSIPVVAVASPSAV-- 240 (301)
Q Consensus 176 --~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~-----------~~~~~~~~~~~~d~I~ftS~sav-- 240 (301)
..+++++++........+...|+..|++| .+|.+.+... ..+.+.+.+.+.|+|+-|.|..+
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V---~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~ 224 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANV---TVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLT 224 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEE---EEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhh
Confidence 25789999998888888999999999855 4454442110 00112223468999999988643
Q ss_pred HHHHHhhhcccCCCceEE--E--ECHHHHHHHHHcCCCeeEe
Q 022176 241 RSWVNLISDTEQWSNSVA--C--IGETTASAAKRLGLKNVYY 278 (301)
Q Consensus 241 ~~~~~~l~~~~~~~~~i~--a--IG~~Ta~al~~~G~~~~~v 278 (301)
+..++.+++ +..++ + -|.+-.+++++.|++.+..
T Consensus 225 ~~~l~~~~~----g~vIIDla~~pggtd~~~a~~~Gv~~~~~ 262 (296)
T PRK08306 225 KEVLSKMPP----EALIIDLASKPGGTDFEYAEKRGIKALLA 262 (296)
T ss_pred HHHHHcCCC----CcEEEEEccCCCCcCeeehhhCCeEEEEE
Confidence 222222322 11111 1 1333345778889887543
No 79
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=94.04 E-value=0.37 Score=43.48 Aligned_cols=168 Identities=10% Similarity=0.096 Sum_probs=98.1
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|++++.+.. ...++ .++.++. -...|+||++|...=.--+..+.+ .+.|++.+|......
T Consensus 22 gIe~~a~~~Gy~l~l~~t---~~~~~---~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~---~~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 22 GIEQEAREHGYQLLLCNT---GDDEE---KEEYIELLLQRRVDGIILASSENDDEELRRLIK---SGIPVVLIDRYIDNP 92 (279)
T ss_dssp HHHHHHHHTTCEEEEEEE---TTTHH---HHHHHHHHHHTTSSEEEEESSSCTCHHHHHHHH---TTSEEEEESS-SCTT
T ss_pred HHHHHHHHcCCEEEEecC---CCchH---HHHHHHHHHhcCCCEEEEecccCChHHHHHHHH---cCCCEEEEEeccCCc
Confidence 455677889998875432 22111 1133322 268999999987655222333333 278999999864222
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCE-EEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT-VLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~-vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
. ++..+.......+....+.|.+.. .++ |+++.+.... .-+.+.|+++|..+....++...
T Consensus 93 ---~------~~~~V~~D~~~a~~~a~~~Li~~G--h~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~ 161 (279)
T PF00532_consen 93 ---E------GVPSVYIDNYEAGYEATEYLIKKG--HRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGD 161 (279)
T ss_dssp ---C------TSCEEEEEHHHHHHHHHHHHHHTT--CCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESS
T ss_pred ---c------cCCEEEEcchHHHHHHHHHHHhcc--cCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccC
Confidence 2 555443322233445667777654 367 8998887542 24678889999977666665432
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhccc
Q 022176 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTE 251 (301)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~ 251 (301)
.......+..+. + ..+|+|+.++-..+...++.+.+.+
T Consensus 162 ~~~~~g~~~~~~ll~~~p~idai~~~nd~~A~ga~~~l~~~g 203 (279)
T PF00532_consen 162 FDYESGYEAARELLESHPDIDAIFCANDMMAIGAIRALRERG 203 (279)
T ss_dssp SSHHHHHHHHHHHHHTSTT-SEEEESSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhhCCCCEEEEEeCHHHHHHHHHHHHHcC
Confidence 211111122222 2 3566999999888888877777654
No 80
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=94.04 E-value=1.3 Score=35.31 Aligned_cols=97 Identities=13% Similarity=0.208 Sum_probs=63.5
Q ss_pred ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh--H---HHHHHHHhhhcccCCCceEEEEC
Q 022176 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP--S---AVRSWVNLISDTEQWSNSVACIG 261 (301)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~--s---av~~~~~~l~~~~~~~~~i~aIG 261 (301)
+.+.+...|+.+|++|..+-+.. .++++.+.. .++|+|..+|- . ..+.+.+.+++.+..+.++++=|
T Consensus 15 Gkniv~~~L~~~GfeVidLG~~v------~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG 88 (128)
T cd02072 15 GNKILDHAFTEAGFNVVNLGVLS------PQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGG 88 (128)
T ss_pred HHHHHHHHHHHCCCEEEECCCCC------CHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEEC
Confidence 45677888999999886666532 223344332 57888887762 2 35556666666544467777655
Q ss_pred HH---------HHHHHHHcCCCeeEecCCCCHHHHHHHHH
Q 022176 262 ET---------TASAAKRLGLKNVYYPTHPGLEGWVDSIL 292 (301)
Q Consensus 262 ~~---------Ta~al~~~G~~~~~v~~~ps~e~ll~ai~ 292 (301)
.- ..+.|+++|+..++ ++..+.+.+++.|.
T Consensus 89 ~~~i~~~d~~~~~~~L~~~Gv~~vf-~pgt~~~~i~~~l~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVF-APGTPPEEAIADLK 127 (128)
T ss_pred CCCCChhhhHHHHHHHHHcCCCEEE-CcCCCHHHHHHHHh
Confidence 42 33569999999877 55558888888764
No 81
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.03 E-value=2.1 Score=37.55 Aligned_cols=179 Identities=10% Similarity=0.061 Sum_probs=94.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~ 143 (301)
.+.+.++++|+++...+.-. .. .....+...+ .-...|.||+.+...-. .++.+.+ .+++++.++..- .
T Consensus 23 ~i~~~~~~~g~~~~~~~~~~-~~-~~~~~~~~~l-~~~~vdgiii~~~~~~~-~~~~l~~---~~ipvV~~~~~~----~ 91 (268)
T cd06277 23 AIEEEAKKYGYNLILKFVSD-ED-EEEFELPSFL-EDGKVDGIILLGGISTE-YIKEIKE---LGIPFVLVDHYI----P 91 (268)
T ss_pred HHHHHHHHcCCEEEEEeCCC-Ch-HHHHHHHHHH-HHCCCCEEEEeCCCChH-HHHHHhh---cCCCEEEEccCC----C
Confidence 45566777898877654311 10 0111122222 12579999998854432 2444433 367888887542 1
Q ss_pred HHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeeeCC
Q 022176 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (301)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (301)
.. ++..+.......+...++.|.+. ..++++++.+... ..-+.+.+++.|..+....++... .
T Consensus 92 ~~------~~~~V~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~--~ 161 (268)
T cd06277 92 NE------KADCVLTDNYSGAYAATEYLIEK--GHRKIGFVGDPLYSPSFEERYEGYKKALLDHGIPFNEDYDITEK--E 161 (268)
T ss_pred CC------CCCEEEecchHHHHHHHHHHHHC--CCCcEEEECCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEEcc--h
Confidence 12 33222222222334444555544 3468999876653 123567778888765432222111 1
Q ss_pred CCcH---HHHHHc-CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 217 HVDQ---TVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 217 ~~~~---~~~~~~-~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.... ++++.. ..+++|+..+...+..++..+.+.+. .++.+++++..
T Consensus 162 ~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~a~~~~g~~~p~di~vig~d~~ 215 (268)
T cd06277 162 EDEEDIGKFIDELKPLPTAFFCSNDGVAFLLIKVLKEMGIRVPEDVSVIGFDDI 215 (268)
T ss_pred hHHHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCcceEEeecCc
Confidence 1111 222222 34899999988888777777766542 36667777653
No 82
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=93.94 E-value=2.5 Score=37.88 Aligned_cols=178 Identities=9% Similarity=0.084 Sum_probs=96.2
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
..+.+.++++|++++.+... .+.+...+.++. ....|.||+++... ....++.+.+ .+++++.++...
T Consensus 46 ~~i~~~~~~~G~~~~~~~~~-----~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 117 (295)
T PRK10653 46 DGAQKEADKLGYNLVVLDSQ-----NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ---ANIPVITLDRGA 117 (295)
T ss_pred HHHHHHHHHcCCeEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH---CCCCEEEEccCC
Confidence 34556778899888764321 122222222222 24789898876432 1223344433 468899988542
Q ss_pred HHHHHHHhhcccCCCceeecCCCCc-HHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY 210 (301)
.. .. .+.. +.++.+. +..+++.|.+....+.+++++.+... ...+.+.+++.|.++.. .+
T Consensus 118 ~~---~~------~~~~-V~~D~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~R~~gf~~al~~~g~~~~~--~~ 185 (295)
T PRK10653 118 TK---GE------VVSH-IASDNVAGGKMAGDFIAKKLGEGAKVIQLEGIAGTSAARERGEGFKQAVAAHKFNVLA--SQ 185 (295)
T ss_pred CC---Cc------eeeE-EccChHHHHHHHHHHHHHHhCCCceEEEEEccCCCccHHHHHHHHHHHHhhCCCEEEE--ec
Confidence 10 01 1221 2233333 45566667654322246776655422 35577888888875532 12
Q ss_pred eeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHH
Q 022176 211 TTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 263 (301)
Q Consensus 211 ~~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~ 263 (301)
. ...... . ++....++++|+.++-..+..+++.+.+.+..++.+++++..
T Consensus 186 ~---~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~l~al~~~G~~dv~vig~d~~ 242 (295)
T PRK10653 186 P---ADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT 242 (295)
T ss_pred C---CCCCHHHHHHHHHHHHHhCCCcCEEEECCChhHHHHHHHHHHcCCCceEEEEeCCC
Confidence 1 111111 1 111123578999999888888888877665447778877654
No 83
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.93 E-value=1.5 Score=35.17 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=66.7
Q ss_pred ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEEChH-----HHHHHHHhhhcccCCCceEEEEC
Q 022176 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPS-----AVRSWVNLISDTEQWSNSVACIG 261 (301)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~s-----av~~~~~~l~~~~~~~~~i~aIG 261 (301)
+.+.+...|+..|++|.....+.. ++++.+. -.+.|+|+++|-. .++.+.+.+++.+..+.++++=|
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~~s------~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLFQT------PEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCC------HHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 456788899999998877777643 2233332 2588999998855 34444555544333245555432
Q ss_pred ---HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHH
Q 022176 262 ---ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 262 ---~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
+.-.+.++++|+...+ ....+.+++++.+.+.+.
T Consensus 92 ~~~~~~~~~l~~~Gvd~~~-~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 92 VIPPQDFDELKEMGVAEIF-GPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCChHhHHHHHHCCCCEEE-CCCCCHHHHHHHHHHHHH
Confidence 4456778999998866 555689999999887653
No 84
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=93.90 E-value=2.5 Score=36.63 Aligned_cols=181 Identities=12% Similarity=0.099 Sum_probs=92.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH--HHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av--~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..++.-. .+......+...+ . .+.|.||+.+...- ...++.+.+ .+++++.++.....
T Consensus 20 ~~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~-~-~~vdgvi~~~~~~~~~~~~~~~l~~---~~ip~V~~~~~~~~- 92 (267)
T cd01536 20 GAEAAAKELGVELIVLDAQN-DVSKQIQQIEDLI-A-QGVDGIIISPVDSAALTPALKKANA---AGIPVVTVDSDIDG- 92 (267)
T ss_pred HHHHHHHhcCceEEEECCCC-CHHHHHHHHHHHH-H-cCCCEEEEeCCCchhHHHHHHHHHH---CCCcEEEecCCCCc-
Confidence 33456667888887755532 1100112222222 2 37999998765432 224444543 46888888775321
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCC-CeeEEEeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTYTT 212 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G-~~v~~~~vY~~ 212 (301)
.. .+.. +.++. ..+..+++.+.+.....++++++.+... ...+.+.++++| .++.. .+..
T Consensus 93 --~~------~~~~-v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~--~~~~ 161 (267)
T cd01536 93 --GN------RLAY-VGTDNYEAGRLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKGFRDALKEYPDIEIVA--VQDG 161 (267)
T ss_pred --cc------eeEE-EecCHHHHHHHHHHHHHHHhCCCceEEEEEcccccchHHHHHHHHHHHHHhCCCcEEEE--EecC
Confidence 11 2221 22222 2344555666543213478888866532 345677788874 54432 1111
Q ss_pred eeCCCCcHHHHHH----cCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECH
Q 022176 213 EPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (301)
Q Consensus 213 ~~~~~~~~~~~~~----~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~ 262 (301)
............. ..++++|+.++...+..+++.+.+.+. .++.++..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~~~~~~l~~~g~~~~i~ivg~d~ 216 (267)
T cd01536 162 NWDREKALQAMEDLLQANPDIDAIFAANDSMALGAVAALKAAGRKGDVKIVGVDG 216 (267)
T ss_pred CCcHHHHHHHHHHHHHhCCCccEEEEecCCchHHHHHHHHhcCCCCCceEEecCC
Confidence 1111111112222 134788888887777777777776543 2566666664
No 85
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.63 E-value=2.1 Score=34.32 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=70.2
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH-----HHHHHH
Q 022176 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLE 119 (301)
Q Consensus 50 g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a-----v~~f~~ 119 (301)
+.+|++..... +..-.+..|+..|++|+......... +-++.+. -.+.|.|+++|-.+ +..+.+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e----~~v~aa~--e~~adii~iSsl~~~~~~~~~~~~~ 75 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPE----EIARQAV--EADVHVVGVSSLAGGHLTLVPALRK 75 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHH----HHHHHHH--HcCCCEEEEcCchhhhHHHHHHHHH
Confidence 45666654432 34566778999999999988774331 2233333 36889999988664 444556
Q ss_pred HHHHcCCCCceEEEEc---hhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 120 AWKEAGTPNVRIGVVG---AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 120 ~l~~~~~~~~~i~avG---~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
.+++.+.+++++++=| +.-.+.+++. |+.-.|.|.. +.++.++.+.+
T Consensus 76 ~L~~~g~~~i~vivGG~~~~~~~~~l~~~------Gvd~~~~~gt-~~~~i~~~l~~ 125 (132)
T TIGR00640 76 ELDKLGRPDILVVVGGVIPPQDFDELKEM------GVAEIFGPGT-PIPESAIFLLK 125 (132)
T ss_pred HHHhcCCCCCEEEEeCCCChHhHHHHHHC------CCCEEECCCC-CHHHHHHHHHH
Confidence 6766666667776644 2235566777 9987666544 56666566543
No 86
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=93.45 E-value=3.5 Score=37.47 Aligned_cols=177 Identities=10% Similarity=0.081 Sum_probs=93.4
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a-v~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
.+.+.++++|+++...... .+.+...+.+.. -...|.||+.+... ....++.+.+ .+++++.+|....
T Consensus 81 ~i~~~~~~~gy~~~i~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~- 151 (327)
T TIGR02417 81 ELEQQCREAGYQLLIACSD-----DNPDQEKVVIENLLARQVDALIVASCMPPEDAYYQKLQN---EGLPVVALDRSLD- 151 (327)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHHHh---cCCCEEEEccccC-
Confidence 4555667889998765431 121111222222 25789998876432 2233444433 3688999986531
Q ss_pred HHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.. ++.. +..+. ..+..+++.|.+.. .++|+++.+... ..-+.+.|+++|..+. + ++..
T Consensus 152 ---~~------~~~~-V~~dn~~~~~~~~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~-~-~~~~ 217 (327)
T TIGR02417 152 ---DE------HFCS-VISDDVDAAAELIERLLSQH--ADEFWYLGAQPELSVSRDRLAGFRQALKQATLEVE-W-VYGG 217 (327)
T ss_pred ---CC------CCCE-EEeCcHHHHHHHHHHHHHCC--CCeEEEEeCcccchhHHHHHHHHHHHHHHcCCChH-h-EEeC
Confidence 12 3322 22232 23444556676543 468999876543 1346677888886532 1 2211
Q ss_pred eeCCCCcHHHHHH-c---C-CCCEEEEEChHHHHHHHHhhhccc--CCCceEEEECHH
Q 022176 213 EPVHHVDQTVLKQ-A---L-SIPVVAVASPSAVRSWVNLISDTE--QWSNSVACIGET 263 (301)
Q Consensus 213 ~~~~~~~~~~~~~-~---~-~~d~I~ftS~sav~~~~~~l~~~~--~~~~~i~aIG~~ 263 (301)
........+.... + . .+++|+..+-..+..++..+.+.+ ..++.+++++..
T Consensus 218 ~~~~~~~~~~~~~ll~~~~~~~~Ai~~~~D~~A~g~~~al~~~g~vP~dvsvigfd~~ 275 (327)
T TIGR02417 218 NYSRESGYQMFAKLCARLGRLPQALFTTSYTLLEGVLDYMLERPLLDSQLHLATFGDN 275 (327)
T ss_pred CCChHHHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEECCc
Confidence 1111111112222 2 2 478999988777766766666544 126777887754
No 87
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=93.28 E-value=1.1 Score=39.66 Aligned_cols=180 Identities=9% Similarity=-0.014 Sum_probs=90.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|+++..+.. . ..+.+...+.++. ..+.|.||+.+.. +....++.+ .. +++++.+|....
T Consensus 19 gi~~~~~~~g~~~~~~~~---~-~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~---~~-~ipvV~~~~~~~ 90 (271)
T cd06314 19 GVKAAGKELGVDVEFVVP---Q-QGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKA---AA-GIKLITTDSDAP 90 (271)
T ss_pred HHHHHHHHcCCeEEEeCC---C-CCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHH---hc-CCCEEEecCCCC
Confidence 445667889988875521 1 1121212222222 2579999997643 223333333 23 688999986431
Q ss_pred HHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.. . .+..........+...++.|.+....+++++++.+... ..-+.+.+++.|..+... + .
T Consensus 91 ~~---~------~~~~V~~D~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~--~-~ 158 (271)
T cd06314 91 DS---G------RYVYIGTDNYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKDAIKDSKIEIVDT--R-G 158 (271)
T ss_pred cc---c------eeEEEccChHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHHHHhcCCcEEEEE--e-c
Confidence 10 0 11111111122344455666543223456666656532 134677788888765431 1 1
Q ss_pred eeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHHHH
Q 022176 213 EPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETTA 265 (301)
Q Consensus 213 ~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~Ta 265 (301)
.....+ . +++....+++|+..+...+..+++.+.+.+. .++.+++++....
T Consensus 159 --~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~~~~~al~~~g~~~di~vig~d~~~~ 217 (271)
T cd06314 159 --DEEDFAKAKSNAEDALNAHPDLKCMFGLYAYNGPAIAEAVKAAGKLGKVKIVGFDEDPD 217 (271)
T ss_pred --CccCHHHHHHHHHHHHHhCCCccEEEecCCccHHHHHHHHHHcCCCCceEEEEeCCCHH
Confidence 111111 1 1211235788887766666666666665443 3577888877543
No 88
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=93.25 E-value=1.3 Score=35.36 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=65.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHHHHHHHcCCCCceEEEEchh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-----av~~f~~~l~~~~~~~~~i~avG~~ 137 (301)
.-.+..|+.+|++|+.+.+-... +.+-+.. .-.+.|.|..+|-+ ..+.+.+.+++.++.++++++=|.-
T Consensus 17 niv~~~L~~~GfeVidLG~~v~~-----e~~v~aa-~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVLSPQ-----EEFIDAA-IETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHHHHHCCCEEEECCCCCCH-----HHHHHHH-HHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 45677899999999988765432 2333332 23578888776643 3455667777878767888886652
Q ss_pred ---------hHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 138 ---------TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 138 ---------Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
..+.|+++ |+...|.|.. ..+.++..|.
T Consensus 91 ~i~~~d~~~~~~~L~~~------Gv~~vf~pgt-~~~~i~~~l~ 127 (128)
T cd02072 91 VVGKQDFEDVEKRFKEM------GFDRVFAPGT-PPEEAIADLK 127 (128)
T ss_pred CCChhhhHHHHHHHHHc------CCCEEECcCC-CHHHHHHHHh
Confidence 22558888 9988787654 6677766664
No 89
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.12 E-value=2 Score=38.21 Aligned_cols=171 Identities=13% Similarity=0.101 Sum_probs=95.5
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
..+.+.++++|++++..+..+ + . ..+ .-...|.||+.+...-...++.+.+ .+++++.+|.....
T Consensus 27 ~~i~~~~~~~gy~~~~~~~~~-----~-~---~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~~~-- 91 (269)
T cd06287 27 AAAAESALERGLALCLVPPHE-----A-D---SPL-DALDIDGAILVEPMADDPQVARLRQ---RGIPVVSIGRPPGD-- 91 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCC-----c-h---hhh-hccCcCeEEEecCCCCCHHHHHHHH---cCCCEEEeCCCCCC--
Confidence 456678889999988775531 1 1 123 2357999998875432223333433 46889999864310
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeeeC
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (301)
.. ++..+.......+..+++.|.+.. .++|+++.+... ..-+.+.++++|..+..+.+ . ...
T Consensus 92 -~~------~~~~V~~d~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~-~-~~~ 160 (269)
T cd06287 92 -RT------DVPYVDLQSAATARMLLEHLRAQG--ARQIALIVGSARRNSYLEAEAAYRAFAAEHGMPPVVLRV-D-EAG 160 (269)
T ss_pred -CC------CCCeEeeCcHHHHHHHHHHHHHcC--CCcEEEEeCCcccccHHHHHHHHHHHHHHcCCCcceeEe-c-CCC
Confidence 12 333222322334455666676542 368988866432 23456778888876432111 1 111
Q ss_pred CCCc-HHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEE
Q 022176 216 HHVD-QTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVAC 259 (301)
Q Consensus 216 ~~~~-~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~a 259 (301)
.... .+..+. + ..+++|+.+|-..+...++.+.+.+. .++.+++
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~gvl~al~~~gl~vP~dvsvig 212 (269)
T cd06287 161 GEEAGYAACAQLLAQHPDLDALCVPVDAFAVGAVRAATELGRAVPDQLRVVT 212 (269)
T ss_pred ChHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 1111 112222 2 35799999999988888888876653 2555665
No 90
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=93.07 E-value=4 Score=37.45 Aligned_cols=178 Identities=8% Similarity=0.013 Sum_probs=91.8
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCce-EEEEchhhHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVR-IGVVGAGTAS 140 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~-i~avG~~Ta~ 140 (301)
.+.+.++++|+.++..... .+.+...+.++. -.+.|.||+.+...-...+..+.+ +.+ +++++...
T Consensus 80 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~----~~p~vV~i~~~~-- 148 (343)
T PRK10727 80 AVEQVAYHTGNFLLIGNGY-----HNEQKERQAIEQLIRHRCAALVVHAKMIPDAELASLMK----QIPGMVLINRIL-- 148 (343)
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHh----cCCCEEEEecCC--
Confidence 3445667789876543221 121111222222 257999999764211112222322 344 77787542
Q ss_pred HHHHHhhcccCCCceeecCCCC-cHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
... ++.. +..+.+ .+...++.|.+. ..++|.++.+... ..-+.+.|+++|..+....++..
T Consensus 149 --~~~------~~~~-V~~Dn~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~ 217 (343)
T PRK10727 149 --PGF------ENRC-IALDDRYGAWLATRHLIQQ--GHTRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFG 217 (343)
T ss_pred --CCC------CCCE-EEECcHHHHHHHHHHHHHC--CCccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeC
Confidence 112 2222 222322 233345566554 2468998876532 23467788888876543222221
Q ss_pred eeCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
........+..+. + ..+++|+..+-..+-.+++.+.+.+. .++.+++++..
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disVigfD~~ 275 (343)
T PRK10727 218 EPDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDV 275 (343)
T ss_pred CCChhHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceeEEeecCc
Confidence 1111111112222 2 35799999988888778777776653 36778888765
No 91
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=93.00 E-value=6 Score=34.80 Aligned_cols=200 Identities=13% Similarity=0.006 Sum_probs=106.5
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
..+.+.++++|+++..... .. .. . . .....|.||+.+...- ..++.+.+ .+++++.++.....
T Consensus 24 ~gi~~~~~~~g~~~~~~~~------~~-~~-~--~-~~~~vdgii~~~~~~~-~~~~~~~~---~~~pvV~~~~~~~~-- 86 (270)
T cd01544 24 LGIEKRAQELGIELTKFFR------DD-DL-L--E-ILEDVDGIIAIGKFSQ-EQLAKLAK---LNPNLVFVDSNPAP-- 86 (270)
T ss_pred HHHHHHHHHcCCEEEEEec------cc-hh-H--H-hccCcCEEEEecCCCH-HHHHHHHh---hCCCEEEECCCCCC--
Confidence 3556778889999887654 11 11 1 1 2467899998754322 22333333 36789999865421
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC------------hhHHHHHHHhCCCeeEEEeee
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~------------~~~L~~~L~~~G~~v~~~~vY 210 (301)
. .+..........+..+++.|.+. ..++++++.+... ...+.+.+.++|. .....++
T Consensus 87 --~------~~~~v~~D~~~a~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~-~~~~~~~ 155 (270)
T cd01544 87 --D------GFDSVVPDFEQAVEKALDYLLEL--GHTRIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKGL-YDPELIY 155 (270)
T ss_pred --C------CCCEEEECHHHHHHHHHHHHHHc--CCCcEEEECCCcccccccchhhhHHHHHHHHHHHHcCC-CChheEe
Confidence 2 33222222223345566667654 3468999887542 2335677788873 2211223
Q ss_pred eeeeCCCCcHH----HHHHc--CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeeEecCC
Q 022176 211 TTEPVHHVDQT----VLKQA--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTH 281 (301)
Q Consensus 211 ~~~~~~~~~~~----~~~~~--~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ 281 (301)
..........+ +++.. ..+|+|+..+...+..+++.+.+.+. .++.+++.+..- .+.-.+-....+ .
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~~~--~~~~~~p~lttv--~ 231 (270)
T cd01544 156 IGDFTVESGYQLMKEALKSLGDNLPTAFFIASDPMAIGALRALQEAGIKVPEDVSVISFNDIE--VAKYVSPPLSTV--K 231 (270)
T ss_pred eCCCCHHHHHHHHHHHHhccCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECChh--HHhhcCCCCcee--c
Confidence 22111111111 12222 24799999999988888888876653 367788887642 233222221122 3
Q ss_pred CCHHHHHHHHHHH
Q 022176 282 PGLEGWVDSILEA 294 (301)
Q Consensus 282 ps~e~ll~ai~~~ 294 (301)
.+...|.+...+.
T Consensus 232 ~~~~~~g~~a~~~ 244 (270)
T cd01544 232 IDTEEMGETAVDL 244 (270)
T ss_pred CCHHHHHHHHHHH
Confidence 4566665544443
No 92
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=92.86 E-value=4.2 Score=35.77 Aligned_cols=184 Identities=13% Similarity=0.086 Sum_probs=93.4
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
..+.+.++++|+++.....-. .+.+...+.++. -.+.|.||+++.. .+...++.+.+ .+++++.++...
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 92 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPET----FDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVA---AGIPVISFNAGD 92 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCC----CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHH---CCCeEEEeCCCC
Confidence 344566677888887554321 022222222222 2579999998754 23334444444 468899998542
Q ss_pred HHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~ 211 (301)
.. .... ..+..........+..+++.|.+. ...++++++.|... ...+.+.++++|..+. .+.
T Consensus 93 ~~-~~~~-----~~~~~V~~d~~~~g~~~~~~l~~~-~g~~~i~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~~---~~~ 162 (271)
T cd06312 93 PK-YKEL-----GALAYVGQDEYAAGEAAGERLAEL-KGGKNVLCVIHEPGNVTLEDRCAGFADGLGGAGITEE---VIE 162 (271)
T ss_pred Cc-cccc-----cceEEeccChHHHHHHHHHHHHHh-cCCCeEEEEecCCCCccHHHHHHHHHHHHHhcCceee---Eee
Confidence 11 0001 011111111223344456666552 13468888876432 2345566667765432 121
Q ss_pred eeeCCCCcHHHHHH----cCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHH
Q 022176 212 TEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (301)
Q Consensus 212 ~~~~~~~~~~~~~~----~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~ 263 (301)
.........+..+. ..++|+|+.++...+...++.+.+.+. .++.+++++..
T Consensus 163 ~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~al~~~g~~~di~vvg~d~~ 219 (271)
T cd06312 163 TGADPTEVASRIAAYLRANPDVDAVLTLGAPSAAPAAKALKQAGLKGKVKLGGFDLS 219 (271)
T ss_pred cCCCHHHHHHHHHHHHHhCCCccEEEEeCCccchHHHHHHHhcCCCCCeEEEEecCC
Confidence 11100111111221 235899999998888777777766543 36778887643
No 93
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=92.84 E-value=2.6 Score=33.85 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=69.2
Q ss_pred CeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH-----HHHHHHH
Q 022176 51 PKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLEA 120 (301)
Q Consensus 51 ~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a-----v~~f~~~ 120 (301)
++|++..... ...-+...|++.|++|+.+..-... +++-+.. .-.+.|.|..+|-++ .+.+.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~-----e~~v~aa-~~~~adiVglS~l~~~~~~~~~~~~~~ 75 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQ-----EEFIKAA-IETKADAILVSSLYGHGEIDCKGLRQK 75 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCH-----HHHHHHH-HHcCCCEEEEecccccCHHHHHHHHHH
Confidence 4566654443 2345677999999999988765432 2333333 235778887766443 4445667
Q ss_pred HHHcCCCCceEEEEch-----h-h---HHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 121 WKEAGTPNVRIGVVGA-----G-T---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 121 l~~~~~~~~~i~avG~-----~-T---a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
+++.++.+.++++=|. . . .+.|++. |+...|.|.. ..+.+++.+.+
T Consensus 76 l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~------Gv~~vF~pgt-~~~~iv~~l~~ 130 (134)
T TIGR01501 76 CDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEM------GFDRVFAPGT-PPEVVIADLKK 130 (134)
T ss_pred HHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHc------CCCEEECcCC-CHHHHHHHHHH
Confidence 7777777776555442 1 1 2358888 9988787665 56777777754
No 94
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=92.78 E-value=4.3 Score=35.91 Aligned_cols=179 Identities=12% Similarity=0.063 Sum_probs=91.0
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~ 143 (301)
.+.+.++++|+++...+... + .+.....+.+ .-...|.||+++...-....+.+.. ..++|++.+|... .
T Consensus 23 gi~~~~~~~gy~~~i~~~~~--~-~~~~~~i~~l-~~~~vdgiI~~~~~~~~~~~~~~~~--~~~~PiV~i~~~~----~ 92 (265)
T cd06354 23 GLERAAKELGIEYKYVESKS--D-ADYEPNLEQL-ADAGYDLIVGVGFLLADALKEVAKQ--YPDQKFAIIDAVV----D 92 (265)
T ss_pred HHHHHHHHcCCeEEEEecCC--H-HHHHHHHHHH-HhCCCCEEEEcCcchHHHHHHHHHH--CCCCEEEEEeccc----C
Confidence 45567788999988865431 1 1111112222 1368999999875433333333332 2367999998642 1
Q ss_pred H-HhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-----h-hHHHHHHHhCC---CeeEEEeeeeee
Q 022176 144 E-VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-----S-NEIEEGLSNRG---FEVVRLNTYTTE 213 (301)
Q Consensus 144 ~-~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-----~-~~L~~~L~~~G---~~v~~~~vY~~~ 213 (301)
. . ++..........+..+...+... ...++|.++.+... + .-+.+.+++.| ..+....++...
T Consensus 93 ~~~------~~~~v~~d~~~a~~~a~~ll~~~-~G~~~I~~i~~~~~~~~~~r~~gf~~~~~~~g~~~~~~~~~~~~~~~ 165 (265)
T cd06354 93 DPP------NVASIVFKEEEGSFLAGYLAALM-TKTGKVGFIGGMDIPLIRRFEAGFEAGVKYVNPGVPDIEVLVQYAGS 165 (265)
T ss_pred CCC------cEEEEEecchhHHHHHHHHHHhh-cCCCeEEEEecccChHHHHHHHHHHHHHHHHhccCCCceEEEEEcCc
Confidence 1 1 23222222222223333223221 13478999876432 1 34566677777 554433333321
Q ss_pred eCC-CCcHHHHHH-c-CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECH
Q 022176 214 PVH-HVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 214 ~~~-~~~~~~~~~-~-~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
... ....+.... + ..+|+|+.++-..+-.+++.+++.+ +.++..+.
T Consensus 166 ~~~~~~~~~~~~~ll~~~pdaI~~~nd~~A~gv~~al~~~g---isIvGfD~ 214 (265)
T cd06354 166 FNDPAKGKEIAQAMYDQGADVIFAAAGGTGNGVFQAAKEAG---VYAIGVDS 214 (265)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEECCCCCchHHHHHHHhcC---CeEEEecC
Confidence 111 111122222 2 3479988888777777777776653 55555554
No 95
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.40 E-value=2.6 Score=31.55 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=55.3
Q ss_pred EEEEEcCC-cChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEE
Q 022176 180 TVLYPASA-KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVA 258 (301)
Q Consensus 180 ~vLi~rg~-~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~ 258 (301)
+||++.|. .....+.+.+++.|+..... .+..........+...+.+.|+|++.....=....
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h--g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~-------------- 64 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH--GRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAM-------------- 64 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE--ecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHH--------------
Confidence 47899993 44567999999999876544 22211122111233446788977765432222221
Q ss_pred EECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHH
Q 022176 259 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 294 (301)
Q Consensus 259 aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~ 294 (301)
....+.+++.|...++ ....+..+|.++|.+.
T Consensus 65 ---~~vk~~akk~~ip~~~-~~~~~~~~l~~~l~~~ 96 (97)
T PF10087_consen 65 ---WKVKKAAKKYGIPIIY-SRSRGVSSLERALERL 96 (97)
T ss_pred ---HHHHHHHHHcCCcEEE-ECCCCHHHHHHHHHhh
Confidence 2334556667775543 5667788888877653
No 96
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=92.35 E-value=5.9 Score=36.39 Aligned_cols=180 Identities=9% Similarity=0.059 Sum_probs=93.1
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCce-EEEEchhhHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVR-IGVVGAGTAS 140 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~-i~avG~~Ta~ 140 (301)
.+.+.++++|++++..... .+.+...+.++. -...|.||+.+...-...+..+.. +.+ ++.++...
T Consensus 80 gi~~~~~~~gy~~~~~~~~-----~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~----~~p~vV~i~~~~-- 148 (346)
T PRK10401 80 AVDLVAQQHQKYVLIGNSY-----HEAEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMD----QIPGMVLINRVV-- 148 (346)
T ss_pred HHHHHHHHCCCEEEEEcCC-----CChHHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHh----cCCCEEEEeccc--
Confidence 3455677889887644321 121211222222 257999999863211111222222 233 77777532
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
... ++..+.......+...++.|... ..++|+++.+... ..-+.+.|+++|..+....++...
T Consensus 149 --~~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~ 218 (346)
T PRK10401 149 --PGY------AHRCVCLDNVSGARMATRMLLNN--GHQRIGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGTGT 218 (346)
T ss_pred --CCC------CCCEEEECcHHHHHHHHHHHHHC--CCCeEEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheecCC
Confidence 112 33222222222244455666554 3478988876432 234677888888754432233211
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
.......+..+. + ..+++|+..+-..+..+++.+.+.+. .++.+++++...
T Consensus 219 ~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvigfD~~~ 276 (346)
T PRK10401 219 PDMQGGEAAMVELLGRNLQLTAVFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIP 276 (346)
T ss_pred CChHHHHHHHHHHHcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeCCch
Confidence 111111112222 2 35799999999988888888877653 367788877643
No 97
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=92.34 E-value=2.1 Score=33.58 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=61.4
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHHHHHHHcCCCCceEEEEchh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-----av~~f~~~l~~~~~~~~~i~avG~~ 137 (301)
.-....|+..|++++++... .|. +.+.+... -.+.|.|++.+.. .++.+.+.+++.+.+++++++-|..
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~--vp~---e~~~~~a~-~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~ 90 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLR--QTP---EEIVEAAI-QEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGII 90 (122)
T ss_pred HHHHHHHHHCCCEEEECCCC--CCH---HHHHHHHH-HcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 45566889999999988765 222 23333332 3578888877543 3345566676766668888888755
Q ss_pred hHHH---HHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 138 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 138 Ta~~---L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
..+. ++++ |+...+. .+.+.+..+..|.
T Consensus 91 ~~~~~~~~~~~------G~d~~~~-~~~~~~~~~~~~~ 121 (122)
T cd02071 91 PPEDYELLKEM------GVAEIFG-PGTSIEEIIDKIR 121 (122)
T ss_pred CHHHHHHHHHC------CCCEEEC-CCCCHHHHHHHHh
Confidence 5444 4456 9876554 4556677666553
No 98
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=92.27 E-value=5 Score=35.31 Aligned_cols=185 Identities=11% Similarity=0.005 Sum_probs=92.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC-CCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l-~~~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
.+...++++|.....+........ +.+...+.+..+ .+.|.||+.+.+. ...+++.+.+ .+++++.++.....
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~vdgiii~~~~~~~~~~~i~~~~~---~~ipvV~~~~~~~~ 95 (275)
T cd06307 20 ALEAAAAAFPDARIRVRIHFVESF-DPAALAAALLRLGARSDGVALVAPDHPQVRAAVARLAA---AGVPVVTLVSDLPG 95 (275)
T ss_pred HHHHHHhhhhccCceEEEEEccCC-CHHHHHHHHHHHHhcCCEEEEeCCCcHHHHHHHHHHHH---CCCcEEEEeCCCCC
Confidence 344566677776665544332211 222222333221 2799999988653 2344555544 46788888754311
Q ss_pred HHHHHhhcccCCCceeecCCC-CcHHHHHHHhccC-CCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKN-GKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~-~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~ 211 (301)
.. .+.. +..+. ..+...++.|.+. ...+++|+++.|... ..-+.+.+++.|..+.....+.
T Consensus 96 ---~~------~~~~-V~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~ 165 (275)
T cd06307 96 ---SP------RAGY-VGIDNRAAGRTAAWLIGRFLGRRPGKVAVLAGSHRFRGHEEREMGFRSVLREEFPGLRVLETLE 165 (275)
T ss_pred ---Cc------eeeE-EccChHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcchHHHHHHHHHHHHhhCCCcEEEeecc
Confidence 01 1111 11222 2233344555543 223468998877532 1235566777765554333222
Q ss_pred eeeCCCCcHHHHHH----cCCCCEEEEEChHHHHHHHHhhhcccCC-CceEEEECHH
Q 022176 212 TEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQW-SNSVACIGET 263 (301)
Q Consensus 212 ~~~~~~~~~~~~~~----~~~~d~I~ftS~sav~~~~~~l~~~~~~-~~~i~aIG~~ 263 (301)
.........+..+. ..++++|+.++... ..+++.+++.+.. ++.++..+..
T Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~-~g~~~al~~~g~~~di~Ivg~d~~ 221 (275)
T cd06307 166 GLDDPARAYEATRKLLARHPDLVGIYNAGGGN-RGVIRALREAGRAGKVVFVGHELT 221 (275)
T ss_pred CCCChHHHHHHHHHHHHhCCCceEEEECCCCh-HHHHHHHHHcCCCCCcEEEEecCC
Confidence 11111111112222 23688888888765 5777777766532 5667777553
No 99
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=92.17 E-value=2.3 Score=38.32 Aligned_cols=187 Identities=10% Similarity=0.093 Sum_probs=97.8
Q ss_pred HHHHHHHhCCCcEEEe-ceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 64 KLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~-P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.+.+.++++|+++..+ +.- .+.+...+.++. -.+.|.||+++.. ++...++.+.+ .+++++.++...
T Consensus 20 gi~~~a~~~g~~v~~~~~~~-----~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~---~~iPvV~v~~~~ 91 (298)
T cd06302 20 GAKEAAKELGVDAIYVGPTT-----ADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKARE---AGIKVVTHDSDV 91 (298)
T ss_pred HHHHHHHHhCCeEEEECCCC-----CCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHH---CCCeEEEEcCCC
Confidence 4556677889888753 321 122222223322 2478999998653 23444444443 478898888532
Q ss_pred HHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCe-eEEEee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFE-VVRLNT 209 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~-v~~~~v 209 (301)
.. ... ++.+ ...+. ..+..+++.|.+.....++|+++.+... ..-+.+.|+++|.. +..+.+
T Consensus 92 ~~--~~~------~~~~-v~~D~~~~g~~a~~~l~~~~~~~~~I~~l~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~ 162 (298)
T cd06302 92 QP--DNR------DYDI-EQADNKAIGETLMDSLAEQMGGKGEYAIFVGSLTATNQNAWIDAAKAYQKEKYYPMLELVDR 162 (298)
T ss_pred CC--Ccc------eeEE-eccCHHHHHHHHHHHHHHHcCCCCEEEEEeCCCCCcchHHHHHHHHHHHhhcCCCCeEEeCc
Confidence 11 001 2221 11222 2344556666654222358988876433 24566778888732 222222
Q ss_pred eeeeeCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHH--HHHHHHH
Q 022176 210 YTTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET--TASAAKR 270 (301)
Q Consensus 210 Y~~~~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~--Ta~al~~ 270 (301)
+. .....+ +..+. + ..+++|+.++-..+...++.+.+.+. .++.++.++.. +++.+..
T Consensus 163 ~~---~~~~~~~~~~~~~~~l~~~~~~~ai~~~~D~~A~g~~~al~~~g~~~dv~vvG~D~~~~~~~~~~~ 230 (298)
T cd06302 163 QY---GDDDADKSYQTAQELLKAYPDLKGIIGPTSVGIPGAARAVEEAGLKGKVAVTGLGLPNQMAPYVKS 230 (298)
T ss_pred cc---CCCCHHHHHHHHHHHHHhCCCceEEEECCCcchhHHHHHHHhcCCCCCEEEEEeCCCHHHHHHHhC
Confidence 22 112211 11211 2 35789988888777777777776543 36677777654 3445444
No 100
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=92.05 E-value=4 Score=35.86 Aligned_cols=179 Identities=11% Similarity=0.076 Sum_probs=93.2
Q ss_pred HHHHHHHhC-CCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 64 KLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.+.+.+++. |+++..... . .+.+...+.++. -.+.|.||+.+.. .....++.+.+ .++|++.+|...
T Consensus 20 ~i~~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~ 91 (270)
T cd06308 20 EIQREASNYPDVELIIADA---A--DDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYR---AGIPVILLDRKI 91 (270)
T ss_pred HHHHHHHhcCCcEEEEEcC---C--CCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHH---CCCCEEEeCCCC
Confidence 344556665 788875422 1 121111222222 2478999887643 22333444433 478999998642
Q ss_pred HHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhC-CCeeEEEee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNT 209 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~-G~~v~~~~v 209 (301)
.. . +....+..+. ..+..+++.|.+.....++|+++.+.... .-+.+.|+++ |.++.. .
T Consensus 92 ~~----~------~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~~~~~--~ 159 (270)
T cd06308 92 LS----D------KYTAYIGADNYEIGRQAGEYIANLLPGKGNILEIWGLEGSSPAIERHDGFKEALSKYPKIKIVA--Q 159 (270)
T ss_pred CC----c------cceEEeecCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCchHHHHHHHHHHHHHHCCCCEEEE--e
Confidence 11 1 1111122222 23444555665532245789999764432 2355677777 765432 1
Q ss_pred eeeeeCCCCc-H---HHHHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECH
Q 022176 210 YTTEPVHHVD-Q---TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (301)
Q Consensus 210 Y~~~~~~~~~-~---~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~ 262 (301)
+......... . .+++...++++|+..+-..+..+++.+.+.+. .++.+++++.
T Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~al~~~g~~~dv~vvg~d~ 217 (270)
T cd06308 160 QDGDWLKEKAEEKMEELLQANPDIDLVYAHNDPMALGAYLAAKRAGREKEIKFIGIDG 217 (270)
T ss_pred cCCCccHHHHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHHHHHcCCCCCcEEEEecC
Confidence 2111111111 1 12222245899999999998888888877653 4677888754
No 101
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=91.96 E-value=6 Score=34.63 Aligned_cols=198 Identities=9% Similarity=0.034 Sum_probs=109.1
Q ss_pred HHHHHHHHhCC-CcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHH-HHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G-~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~-f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++| ++++..+.-. ...+.+...+ ....|.||+.|...-.. ....+. ..+.+++.+|.....
T Consensus 18 ~~i~~~l~~~g~~~l~~~~~~~----~~~~~~~~~~--~~~vdGvIi~~~~~~~~~~~~~~~---~~~~PvV~i~~~~~~ 88 (247)
T cd06276 18 NSFVNTLGKNAQVDLYFHHYNE----DLFKNIISNT--KGKYSGYVVMPHFKNEIQYFLLKK---IPKEKLLILDHSIPE 88 (247)
T ss_pred HHHHHHHHhcCcEEEEEEcCch----HHHHHHHHHH--hcCCCEEEEecCCCCcHHHHHHhc---cCCCCEEEEcCcCCC
Confidence 45566777889 7777654332 1111222222 36799999987642221 222221 136789999975311
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhcc--CCCCCCEEEEEcCCcC------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPK--NGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~--~~~~~~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.. ++..+.......+..+++.|.+ . ..++|.++.+... ..-+.+.|+++|..+... .
T Consensus 89 ---~~------~~~~V~~D~~~~~~~a~~~L~~~~~--G~~~Ia~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~-~--- 153 (247)
T cd06276 89 ---GG------EYSSVAQDFEKAIYNALQEGLEKLK--KYKKLILVFPNKTAIPKEIKRGFERFCKDYNIETEII-N--- 153 (247)
T ss_pred ---CC------CCCeEEEccHHHHHHHHHHHHHHhc--CCCEEEEEecCccHhHHHHHHHHHHHHHHcCCCcccc-c---
Confidence 12 3322223333345556677766 4 3478998876542 234667788888765321 1
Q ss_pred eeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHH
Q 022176 213 EPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVD 289 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ 289 (301)
... .. .....|+|+.+|-..+..++..+.+.+. .++.+++++..-......-++..+ ..+.+.|.+
T Consensus 154 ---~~~-~~---~~~~~~ai~~~~d~~A~g~~~~l~~~g~~iP~disvigfd~~~~~~~~~p~lttv----~~~~~~~g~ 222 (247)
T cd06276 154 ---DYE-NR---EIEKGDLYIILSDTDLVFLIKKARESGLLLGKDIGIISYNDTPLKEILRNGITTI----STDFENMGK 222 (247)
T ss_pred ---ccc-hh---hccCCcEEEEeCHHHHHHHHHHHHHcCCcCCceeEEEEecCchhhhccCCCceEE----ecCHHHHHH
Confidence 000 00 1234599999999999989888877653 367888888653333222233222 234566655
Q ss_pred HHHHHH
Q 022176 290 SILEAL 295 (301)
Q Consensus 290 ai~~~~ 295 (301)
...+.+
T Consensus 223 ~a~~~L 228 (247)
T cd06276 223 KAAEMV 228 (247)
T ss_pred HHHHHH
Confidence 555443
No 102
>PRK09492 treR trehalose repressor; Provisional
Probab=91.76 E-value=9.6 Score=34.32 Aligned_cols=174 Identities=9% Similarity=0.050 Sum_probs=94.2
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|++++.+.. . .+.+...+.+.. -..+|+||+.+..... .+.+... ..++++++...
T Consensus 82 ~~i~~~~~~~gy~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~~~l~~~---~~pvv~i~~~~-- 149 (315)
T PRK09492 82 RTMLPAFYEQGYDPIIMES---Q--FSPEKVNEHLGVLKRRNVDGVILFGFTGIT--EEMLAPW---QDKLVLLARDA-- 149 (315)
T ss_pred HHHHHHHHHcCCeEEEEec---C--CChHHHHHHHHHHHhcCCCEEEEeCCCccc--HHHHHhc---CCCEEEEeccC--
Confidence 3455677888988765332 1 122211222222 2569999987633211 1223222 35788887531
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC--------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
. ++..........+..+++.|.+. ..++|.++.+... ..-+.+.|+++|..+.. +..
T Consensus 150 ----~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~---~~~ 214 (315)
T PRK09492 150 ----K------GFSSVCYDDEGAIKLLMQRLYDQ--GHRHISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTPVA---ALG 214 (315)
T ss_pred ----C------CCcEEEECcHHHHHHHHHHHHHc--CCCeEEEEcCCcccchhHHHHHHHHHHHHHHcCCCcee---ecC
Confidence 1 33332222223345566777654 3468999864321 23466788888876532 111
Q ss_pred eeCCCCcHHHHHH-c-CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHH
Q 022176 213 EPVHHVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 263 (301)
Q Consensus 213 ~~~~~~~~~~~~~-~-~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~ 263 (301)
...........+. + ..+++|+..|-..+-.+++.+.+.+..++.++.++..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~ai~~~~D~~A~g~~~al~~~g~~disvig~d~~ 267 (315)
T PRK09492 215 GLSMQSGYELVAKVLTPETTALVCATDTLALGASKYLQEQGRDDIQVAGVGNT 267 (315)
T ss_pred CCCchHHHHHHHHHhhcCCCEEEEcCcHHHHHHHHHHHHcCCCceEEEeeCch
Confidence 1001111112222 2 4689999999888888888887766556777888764
No 103
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=91.70 E-value=9.7 Score=37.80 Aligned_cols=130 Identities=16% Similarity=0.158 Sum_probs=83.0
Q ss_pred CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 128 ~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
+..++.-.-+|++.+++++ .++++.+ +.++-+++..|......+.++.++.-...-..
T Consensus 54 ~~dviIsrG~ta~~i~~~~-----~iPVv~i--~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~--------------- 111 (526)
T TIGR02329 54 RCDVVVAGGSNGAYLKSRL-----SLPVIVI--KPTGFDVMQALARARRIASSIGVVTHQDTPPA--------------- 111 (526)
T ss_pred CCcEEEECchHHHHHHHhC-----CCCEEEe--cCChhhHHHHHHHHHhcCCcEEEEecCcccHH---------------
Confidence 4556555566899999875 6666544 34555666666443323445555544332111
Q ss_pred eeeeeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHH
Q 022176 208 NTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 286 (301)
Q Consensus 208 ~vY~~~~~~~~~~~~~~~~-~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ 286 (301)
...+.+.+ -+++.+.+.|...++..+..+++. ++.++.=|..+.+.++++|++.+.+-+ .++
T Consensus 112 -----------~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~---G~~~viG~~~~~~~A~~~gl~~ili~s---~es 174 (526)
T TIGR02329 112 -----------LRRFQAAFNLDIVQRSYVTEEDARSCVNDLRAR---GIGAVVGAGLITDLAEQAGLHGVFLYS---ADS 174 (526)
T ss_pred -----------HHHHHHHhCCceEEEEecCHHHHHHHHHHHHHC---CCCEEECChHHHHHHHHcCCceEEEec---HHH
Confidence 11122222 367788899999999998888765 456655555888889999999877633 488
Q ss_pred HHHHHHHHHH
Q 022176 287 WVDSILEALR 296 (301)
Q Consensus 287 ll~ai~~~~~ 296 (301)
+.+++.+.++
T Consensus 175 i~~a~~~A~~ 184 (526)
T TIGR02329 175 VRQAFDDALD 184 (526)
T ss_pred HHHHHHHHHH
Confidence 8888887754
No 104
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=91.51 E-value=6.2 Score=34.47 Aligned_cols=182 Identities=15% Similarity=0.133 Sum_probs=91.2
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+...++++|+++..++. . .+.+...+.++. -.+.|+||+..... ....++.+.+ .+++++.++....
T Consensus 21 g~~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~---~~iPvV~~~~~~~ 92 (275)
T cd06317 21 AFQAAAEEDGVEVIVLDA---N--GDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQ---AGIPVVITNSNIS 92 (275)
T ss_pred HHHHHHHhcCCEEEEEcC---C--cCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHH---CCCcEEEeCCCCC
Confidence 444556678988776432 1 122222222221 24799998876432 2334454544 4778888875421
Q ss_pred HHHHHHhhcccCCCce--eec-CCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEe
Q 022176 140 SIFEEVIQSSKCSLDV--AFS-PSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~--~~~-p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~ 208 (301)
.. +... .++ .+. ..+...++.+.+.....++|+++.+.... ..+.+.++++|..+....
T Consensus 93 ----~~------~~~~v~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~ 162 (275)
T cd06317 93 ----EK------GFEFIKSFTGPDDISQGERSAEAMCKALGGKGQIVVIAGQPGNGTAIERQKGFEDELAEVCPGVEVLD 162 (275)
T ss_pred ----CC------ccchhhhhccccHHHHHHHHHHHHHHHcCCCceEEEEecCCCCchHHHHHHHHHHHHHhhCCCCEEEe
Confidence 11 1110 011 111 22344555555442233689888653321 335677778775544333
Q ss_pred eeeeeeCCCCcH----HHHHHc-CCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHH
Q 022176 209 TYTTEPVHHVDQ----TVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (301)
Q Consensus 209 vY~~~~~~~~~~----~~~~~~-~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~ 263 (301)
.+.......... .++... .++++|+..+-..+..+++.+.+.+. .++.+++++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~dv~v~g~d~~ 223 (275)
T cd06317 163 TQPADWDREKAQVAMEALITKFGDDIDGVYAGDDNMARGALNAAKEAGLAGGIVIVGANNF 223 (275)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCccEEEECCCcHHHHHHHHHHhcCCcCCcEEEEeCCC
Confidence 322111101111 122222 34789988887777777777776553 36777776543
No 105
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=91.51 E-value=10 Score=34.46 Aligned_cols=178 Identities=8% Similarity=0.026 Sum_probs=92.8
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++...+.- .+.+...+.++. -...|+||+.+...-...++.+.+ .+++++.++....
T Consensus 84 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 153 (331)
T PRK14987 84 GIESVTDAHGYQTMLAHYG-----YKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEV---AGIPVVELMDSQS-- 153 (331)
T ss_pred HHHHHHHHCCCEEEEecCC-----CCHHHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHh---CCCCEEEEecCCC--
Confidence 4555677789888754431 111111122211 357999998753322223333433 3678887753210
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
. +....+..+. ..+...++.|.+. ..++|.++.+... ..-+.+.|.++|.....+ ++....
T Consensus 154 ---~------~~~~~V~~Dn~~~~~~a~~~L~~~--Gh~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~ 221 (331)
T PRK14987 154 ---P------CLDIAVGFDNFEAARQMTTAIIAR--GHRHIAYLGARLDERTIIKQKGYEQAMLDAGLVPYSV-MVEQSS 221 (331)
T ss_pred ---C------CCCceEEeCcHHHHHHHHHHHHHC--CCceEEEEcCCCcccHHHHHHHHHHHHHHcCCCccce-eecCCC
Confidence 1 1111122222 2344556667654 3468998866432 234667788888633222 221111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
......+..+. + ..+++|+.++-..+-.++..+.+.+. .++.+++++..
T Consensus 222 ~~~~~~~~~~~~l~~~~~~~ai~~~nD~~A~g~~~al~~~g~~vP~disvigfD~~ 277 (331)
T PRK14987 222 SYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHGH 277 (331)
T ss_pred ChhhHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCccEEEeeCCc
Confidence 10111112222 2 35899999998888888887776553 36788888754
No 106
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=91.23 E-value=6.7 Score=34.17 Aligned_cols=175 Identities=13% Similarity=0.089 Sum_probs=92.8
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|+++...+.- .+.+...+.++. -...|.||+++...- .+.+.+ .++++++++....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~~~~~~~dgiii~~~~~~---~~~~~~---~gipvv~~~~~~~- 86 (265)
T cd06291 19 RAVEKELYKKGYKLILCNSD-----NDPEKEREYLEMLRQNQVDGIIAGTHNLG---IEEYEN---IDLPIVSFDRYLS- 86 (265)
T ss_pred HHHHHHHHHCCCeEEEecCC-----ccHHHHHHHHHHHHHcCCCEEEEecCCcC---HHHHhc---CCCCEEEEeCCCC-
Confidence 34456778889887754321 111111222222 257999999876422 122322 4688999987532
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-h-------hHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-S-------NEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
. ++...-......+..+++.|.+. ..++|+++.+... . .-+.+.|+++|..+..+. +..
T Consensus 87 ----~------~~~~V~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~-~~~ 153 (265)
T cd06291 87 ----E------NIPIVSSDNYEGGRLAAEELIER--GCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIE-IQE 153 (265)
T ss_pred ----C------CCCeEeechHHHHHHHHHHHHHc--CCcEEEEEccCcccccchHHHHHHHHHHHHHcCCCCChhe-eec
Confidence 2 33221111122345566666654 3468988876554 1 346778888887653321 111
Q ss_pred eeCCCC-cHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 213 EPVHHV-DQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 213 ~~~~~~-~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
..+.. ..+.... + ..+++|+.++-..+..+++.+.+.+. .++.+++++..
T Consensus 154 -~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~vp~di~v~g~d~~ 211 (265)
T cd06291 154 -NFDDAEKKEEIKELLEEYPDIDGIFASNDLTAILVLKEAQQRGIRVPEDLQIIGYDGT 211 (265)
T ss_pred -cccchHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEeccCCh
Confidence 11111 1112222 2 35688888787777777777776542 25666666543
No 107
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.05 E-value=15 Score=35.24 Aligned_cols=216 Identities=13% Similarity=0.095 Sum_probs=104.4
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEece-------------eEeeeCC--CchHHHHHHhcCCCccEEEEeChHHHH
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGS 115 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~-------------~~~~~~~--d~~~l~~~l~~l~~~d~IiftS~~av~ 115 (301)
|+|+|.-...-+..+++.|.+.|.++..+-. +++.... +...+.+. .+.++|.|++++++...
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~--~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREA--GAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHc--CCCcCCEEEEecCChHH
Confidence 3556655555556666666666666554421 1111111 11222221 35789999998776443
Q ss_pred HH-HH-HHHHcCCCCceEEEE--chhh---HHHH--HHHhhcccCCCceeecCCCCcHHHHHHHhccCCC------CCCE
Q 022176 116 VF-LE-AWKEAGTPNVRIGVV--GAGT---ASIF--EEVIQSSKCSLDVAFSPSKATGKILASELPKNGK------KKCT 180 (301)
Q Consensus 116 ~f-~~-~l~~~~~~~~~i~av--G~~T---a~~L--~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~------~~~~ 180 (301)
.. .. .++.. .+..++++. .... .+.+ ++. |....+.|....+..++..+..... .+..
T Consensus 79 n~~~~~~~r~~-~~~~~ii~~~~~~~~~~~~~l~~~~~~------G~~~vi~p~~~~a~~l~~~l~~~~~~~~~~~~~~~ 151 (453)
T PRK09496 79 NMVACQIAKSL-FGAPTTIARVRNPEYAEYDKLFSKEAL------GIDLLISPELLVAREIARLIEYPGALDVEEFADGR 151 (453)
T ss_pred HHHHHHHHHHh-cCCCeEEEEECCccccchhhhhhhhcC------CccEEECHHHHHHHHHHHHhcCCCceEeeeecCCe
Confidence 33 22 22232 134455553 2222 2223 556 8877677766666667665532110 1111
Q ss_pred --EE--EEcCC--cChhHHHHHH---HhCCCeeEEEeeeeeee-CCCCcHHHHHHcCCCC-EEEEEChHHHHHHHHhhhc
Q 022176 181 --VL--YPASA--KASNEIEEGL---SNRGFEVVRLNTYTTEP-VHHVDQTVLKQALSIP-VVAVASPSAVRSWVNLISD 249 (301)
Q Consensus 181 --vL--i~rg~--~~~~~L~~~L---~~~G~~v~~~~vY~~~~-~~~~~~~~~~~~~~~d-~I~ftS~sav~~~~~~l~~ 249 (301)
+. .+..+ .....+.+.- ...|+.+.. +++... ..+.... .+..-| .++...+..++.|...+..
T Consensus 152 ~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~--i~r~~~~~~p~~~~---~l~~gD~l~v~g~~~~l~~~~~~~~~ 226 (453)
T PRK09496 152 VQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVA--IFRGGRLIIPRGDT---VIEAGDEVYFIGAREHIRAVMSEFGR 226 (453)
T ss_pred EEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEE--EEECCEEEcCCCCc---EecCCCEEEEEeCHHHHHHHHHHhCc
Confidence 11 11111 1112222222 234555543 343211 0111111 133334 5566788888888887765
Q ss_pred ccCCCceEEEEC-----HHHHHHHHHcCCCeeEecC
Q 022176 250 TEQWSNSVACIG-----ETTASAAKRLGLKNVYYPT 280 (301)
Q Consensus 250 ~~~~~~~i~aIG-----~~Ta~al~~~G~~~~~v~~ 280 (301)
......+++.+| ...++.|.+.|..++++-.
T Consensus 227 ~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~ 262 (453)
T PRK09496 227 LEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIER 262 (453)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 432234555554 6788888888988766543
No 108
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=90.75 E-value=9.3 Score=32.34 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=84.3
Q ss_pred CCccEEEEeChHHHHH-HHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCC
Q 022176 101 TIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (301)
Q Consensus 101 ~~~d~IiftS~~av~~-f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~ 178 (301)
..+|.|++........ ..+.+.+ .+++++.++....... .. .++. .+.+.. ..++.+++.+.+.. .
T Consensus 57 ~~~d~ii~~~~~~~~~~~~~~~~~---~~ip~v~~~~~~~~~~-~~-----~~~~-~~~~~~~~~~~~~~~~l~~~~--~ 124 (269)
T cd01391 57 QGVDGIIGPPSSSSALAVVELAAA---AGIPVVSLDATAPDLT-GY-----PYVF-RVGPDNEQAGEAAAEYLAEKG--W 124 (269)
T ss_pred cCCCEEEecCCCHHHHHHHHHHHH---cCCcEEEecCCCCccC-CC-----ceEE-EEcCCcHHHHHHHHHHHHHhC--C
Confidence 4789998876654332 3444433 4688888877653321 11 0221 223332 33555666666653 4
Q ss_pred CEEEEEcCCc-C-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--C-CCCEEEEEChHHHHHHHHhhhc
Q 022176 179 CTVLYPASAK-A-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--L-SIPVVAVASPSAVRSWVNLISD 249 (301)
Q Consensus 179 ~~vLi~rg~~-~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~-~~d~I~ftS~sav~~~~~~l~~ 249 (301)
+++.++.+.. . ...+.+.+++.|.++.....+.... +...+.+.+.+ . ++++|++.+...+..+++.+.+
T Consensus 125 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~ 203 (269)
T cd01391 125 KRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDT-EKGFQALLQLLKAAPKPDAIFACNDEMAAGALKAARE 203 (269)
T ss_pred ceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCc-cccHHHHHHHHhcCCCCCEEEEcCchHHHHHHHHHHH
Confidence 6888887766 2 2456677777875544333332211 11222233333 2 5899999998888888888876
Q ss_pred ccC--CCceEEEECHH
Q 022176 250 TEQ--WSNSVACIGET 263 (301)
Q Consensus 250 ~~~--~~~~i~aIG~~ 263 (301)
.+. .+..+++.+..
T Consensus 204 ~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 204 AGLTPGDISIIGFDGS 219 (269)
T ss_pred cCCCCCCCEEEecccc
Confidence 653 35666666543
No 109
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.51 E-value=6.3 Score=34.52 Aligned_cols=177 Identities=13% Similarity=0.126 Sum_probs=88.7
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+...++++|+++..+..- .+.+...+.+.. -..+|.||+.+.. .....++.+.+ .++++++++....
T Consensus 20 ~i~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~~ 91 (277)
T cd06319 20 GVKSKAKALGYDAVELSAE-----NSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQ---AKIPVVIADIGAE 91 (277)
T ss_pred HHHHHHHhcCCeEEEecCC-----CCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHH---CCCCEEEEecCCC
Confidence 3445667789888754331 121111122212 2679999887633 22333444443 4678888875421
Q ss_pred HHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccC----CCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEE
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKN----GKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~----~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~ 207 (301)
.. .....+.++. ..+..+++.|.+. ....++|.++.+... ..-+.+.|+++|..+..+
T Consensus 92 ----~~------~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~ 161 (277)
T cd06319 92 ----GG------DYVSYIKSDNYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQKRKNGQKRTKGFKEAMKEAGCDLAGI 161 (277)
T ss_pred ----CC------ceEEEEeeccHHHHHHHHHHHHHHHHhhCCCCCcEEEEeccCCCccHHHHHHHHHHHHHhcCCceEee
Confidence 11 1111122222 2233344444332 113468888875432 234677888888764322
Q ss_pred eeeeeeeCCCCcHH-------HHHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECH
Q 022176 208 NTYTTEPVHHVDQT-------VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (301)
Q Consensus 208 ~vY~~~~~~~~~~~-------~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~ 262 (301)
+.. .+...+. +++...++++|+..+...+...++.+.+.+. .++.+++++.
T Consensus 162 --~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~di~vvg~d~ 220 (277)
T cd06319 162 --RQQ--KDFSYQETFDYTNDLLTANPDIRAIWLQGSDRYQGALDAIATAGKTGKVLLICFDA 220 (277)
T ss_pred --ccC--CCCCHHHHHHHHHHHHHhCCCCCEEEECCCccchHHHHHHHHcCCCCCEEEEEcCC
Confidence 211 1111111 2222235788888777766677777766543 2566777755
No 110
>PRK09526 lacI lac repressor; Reviewed
Probab=90.47 E-value=4.7 Score=36.87 Aligned_cols=175 Identities=10% Similarity=0.002 Sum_probs=93.1
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..+..- ..+.+...+.+.. -..+|.||+.++..-.... .+.. ...+++++.++...
T Consensus 84 gi~~~a~~~g~~~~i~~~~----~~~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~-~~~~-~~~~iPvV~~d~~~--- 154 (342)
T PRK09526 84 AIKSRADQLGYSVVISMVE----RSGVEACQAAVNELLAQRVSGVIINVPLEDADAE-KIVA-DCADVPCLFLDVSP--- 154 (342)
T ss_pred HHHHHHHHCCCEEEEEeCC----CChHHHHHHHHHHHHhcCCCEEEEecCCCcchHH-HHHh-hcCCCCEEEEeccC---
Confidence 3446677889988765321 1111111222222 2579999986432212111 1211 11368888887521
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++.. +..+. ..+..+++.|.+. ..++|+++.|.... .-+.+.|++.|..+.. ++.
T Consensus 155 --~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~~~--~~~-- 219 (342)
T PRK09526 155 --QS------PVNS-VSFDPEDGTRLGVEHLVEL--GHQRIALLAGPESSVSARLRLAGWLEYLTDYQLQPIA--VRE-- 219 (342)
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHC--CCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCcce--EEe--
Confidence 12 3222 22222 3345566677664 34789999775431 3467788888875322 111
Q ss_pred eCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.....+ +.... + ..+++|+.++-..+..+++.+.+.+. .++.++.++..
T Consensus 220 -~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~disvig~d~~ 278 (342)
T PRK09526 220 -GDWSAMSGYQQTLQMLREGPVPSAILVANDQMALGVLRALHESGLRVPGQISVIGYDDT 278 (342)
T ss_pred -CCCchHHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeeCCC
Confidence 111111 11222 2 35899999998888888888876653 35667777654
No 111
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.28 E-value=12 Score=32.86 Aligned_cols=184 Identities=11% Similarity=0.053 Sum_probs=94.5
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
..+.+.++++|+++..... ..+.+...+.++. -...|+||+++.. ++...++.+.+ .+++++++|...
T Consensus 19 ~~i~~~~~~~g~~v~~~~~-----~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~ 90 (282)
T cd06318 19 EAAKAHAKALGYELISTDA-----QGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKA---AGVPVVVVDSSI 90 (282)
T ss_pred HHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHH---CCCCEEEecCCC
Confidence 3455677889998764321 1122211222222 2578999997643 33334444443 478899998642
Q ss_pred HHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhcc-CCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeE---E
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPK-NGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVV---R 206 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~-~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~---~ 206 (301)
.... . .+.. +..+. ..++.+++.|.+ ...++++|+++.+... ..-+.+.|+++|.... .
T Consensus 91 ~~~~--~------~~~~-v~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~ 161 (282)
T cd06318 91 NLEA--G------VVTQ-VQSSNAKNGNLVGEWVVGELGDKPMKIILLSGDAGNLVGQARRDGFLLGVSEAQLRKYGKTN 161 (282)
T ss_pred CCCc--C------eEEE-EecCcHHHHHHHHHHHHHHhCCCCceEEEEECCCCCchHhHHHHhHHHHHhhCcccccccCC
Confidence 1000 0 1111 22222 235556666655 3323458998876432 2346677777764211 1
Q ss_pred EeeeeeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHH
Q 022176 207 LNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (301)
Q Consensus 207 ~~vY~~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~ 263 (301)
+.++.......... . ++....++|+|+..+-..+..++..+.+.+. .++.+++++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~dv~vvg~d~~ 226 (282)
T cd06318 162 FTIVAQGYGDWTREGGLKAMEDLLVAHPDINVVYSENDDMALGAMRVLAEAGKTDDVKVAAADGQ 226 (282)
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHhCCCcCEEEECCcchHHHHHHHHHHcCCCCCeEEEecCCC
Confidence 11111111111111 1 1211246899999988877777777776553 36777777554
No 112
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=90.12 E-value=10 Score=34.26 Aligned_cols=188 Identities=12% Similarity=0.073 Sum_probs=83.1
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeC-CCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEch---
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQG-PDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA--- 136 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~-~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~--- 136 (301)
+-+.+.|++.|+.. .--.++.... .|.+.+.+.+++ -.++|.|+-+...+.....+.+. +++|++..|-
T Consensus 18 ~gf~~~L~~~g~~~-~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa~~~~~~~~----~~iPVVf~~V~dp 92 (294)
T PF04392_consen 18 RGFKDGLKELGYDE-KNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAAQALAKHLK----DDIPVVFCGVSDP 92 (294)
T ss_dssp HHHHHHHHHTT--C-CCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHHHHHHHH-S----S-S-EEEECES-T
T ss_pred HHHHHHHHHcCCcc-ccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHhcC----CCcEEEEEeccCh
Confidence 56778888999876 2122233332 344555555543 36899998888888877665442 2277776664
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEE-EcCCcC-----hhHHHHHHHhCCCeeEEEeee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLY-PASAKA-----SNEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi-~rg~~~-----~~~L~~~L~~~G~~v~~~~vY 210 (301)
......... .. .|-++.=+-+....+.-++.+.+....-++|.+ ...... .+.+.+..++.|+++..+.+-
T Consensus 93 ~~~~l~~~~-~~--~~~nvTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~ 169 (294)
T PF04392_consen 93 VGAGLVDSL-DR--PGKNVTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVP 169 (294)
T ss_dssp TTTTS-S-S-SS----SSEEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred hhhhccccc-cC--CCCCEEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 111111111 00 011110011222334444545444333467743 333322 346667777889887665542
Q ss_pred eeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHhhhcc-cCCCceEEEECH
Q 022176 211 TTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDT-EQWSNSVACIGE 262 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~~-~~~d~I~ftS~sav~~~~~~l~~~-~~~~~~i~aIG~ 262 (301)
. ..+.....+.+ ++.|++++.....+..-...+... ...++++++..+
T Consensus 170 ~----~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~~ 219 (294)
T PF04392_consen 170 S----SEDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSSD 219 (294)
T ss_dssp S----GGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESSH
T ss_pred c----HhHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECCH
Confidence 2 12222333333 678988888776665433332211 122566666543
No 113
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=89.64 E-value=13 Score=32.32 Aligned_cols=180 Identities=12% Similarity=0.089 Sum_probs=92.5
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
..+.+.+++.|+++...+. . .+.+...+.++. -...|+||+++.. .....++.+.+ .+++++.++...
T Consensus 19 ~~i~~~~~~~g~~~~i~~~---~--~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~ 90 (267)
T cd06322 19 NAMKEEAKKQKVNLIVSIA---N--QDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKK---AGIPVITVDIAA 90 (267)
T ss_pred HHHHHHHHhcCCEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHH---CCCCEEEEcccC
Confidence 4556677788988875432 1 121111122211 2579999997653 23334455544 367888887531
Q ss_pred HHHHHHHhhcccCCCceeecCCCCc-HHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhC-CCeeEEEeee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNR-GFEVVRLNTY 210 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~-G~~v~~~~vY 210 (301)
... +....+..+.+. +...++.|.+.....++++++.+... ..-+.+.+++. |.++... +
T Consensus 91 ----~~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~--~ 158 (267)
T cd06322 91 ----EGV------AVVSHVATDNYAGGVLAGELAAKVLNGKGQVAIIDYPTVQSVVDRVRGFKEALADYPNIKIVAV--Q 158 (267)
T ss_pred ----CCC------ceEEEEecChHHHHHHHHHHHHHHhCCCceEEEEecCCCccHHHHHHHHHHHHHhCCCcEEEEe--c
Confidence 111 111112223222 33344555543223368888865422 23456677777 7655321 1
Q ss_pred eeeeCCCCcHH----HHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHH
Q 022176 211 TTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 263 (301)
Q Consensus 211 ~~~~~~~~~~~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~ 263 (301)
.........+ ++....++++|+..+-..+...++.+.+.+..++.+++++..
T Consensus 159 -~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~di~vvg~d~~ 214 (267)
T cd06322 159 -PGITRAEALTAAQNILQANPDLDGIFAFGDDAALGAVSAIKAAGRDNVKVIGFDGM 214 (267)
T ss_pred -CCCChHHHHHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHHHHCCCCCeEEEEecCC
Confidence 1111111111 111123589999999888888877777655446677777543
No 114
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=89.46 E-value=9.2 Score=33.25 Aligned_cols=141 Identities=19% Similarity=0.282 Sum_probs=94.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC-CCccEE-----EEeChHHHHHHHHHHHHcCC---CCceEEEE
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWI-----IITSPEAGSVFLEAWKEAGT---PNVRIGVV 134 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l-~~~d~I-----iftS~~av~~f~~~l~~~~~---~~~~i~av 134 (301)
.-...|++.|++=+.+..+.+.|..+++.+....+.. ..|+-| ++-|.+-...+++.+.+.-+ .+-.++-+
T Consensus 64 ~aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~aik~~~ppl~k~e~~vlm 143 (265)
T COG4822 64 QALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEAIKDQIPPLNKDEILVLM 143 (265)
T ss_pred HHHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhheeecCCceeechhhHHHHHHHHHHhcCCcCcCeEEEEE
Confidence 3446788999999999999999887776665544332 334443 45677888888888876543 35566667
Q ss_pred chhhHHH-----------HHHHhhcccCCCceeecC---CCCcHHHHHHHhccCCCCC---CEEEEEcCCcChhHHH---
Q 022176 135 GAGTASI-----------FEEVIQSSKCSLDVAFSP---SKATGKILASELPKNGKKK---CTVLYPASAKASNEIE--- 194 (301)
Q Consensus 135 G~~Ta~~-----------L~~~~~~~~~G~~~~~~p---~~~~~e~L~~~l~~~~~~~---~~vLi~rg~~~~~~L~--- 194 (301)
|.+|.-. +.++ |+.++++. .-+..+.+++.|.+...+. .+++++.|+....+++
T Consensus 144 gHGt~h~s~~~YacLd~~~~~~------~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasdd 217 (265)
T COG4822 144 GHGTDHHSNAAYACLDHVLDEY------GFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDD 217 (265)
T ss_pred ecCCCccHHHHHHHHHHHHHhc------CCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccc
Confidence 7776432 3334 77554543 2355788889998765433 2467888987755554
Q ss_pred -----HHHHhCCCeeEEEeeeeee
Q 022176 195 -----EGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 195 -----~~L~~~G~~v~~~~vY~~~ 213 (301)
+.|++.|+.| .+|..-
T Consensus 218 edswk~il~~~G~~v---~~~l~G 238 (265)
T COG4822 218 EDSWKNILEKNGFKV---EVYLHG 238 (265)
T ss_pred hHHHHHHHHhCCcee---EEEeec
Confidence 8899999977 566543
No 115
>PRK06756 flavodoxin; Provisional
Probab=89.36 E-value=4.6 Score=32.52 Aligned_cols=95 Identities=8% Similarity=0.077 Sum_probs=52.6
Q ss_pred hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChH--------HHHHHHHhhhcccCCCceEEEECH
Q 022176 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS--------AVRSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~s--------av~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
+.+.+.|++.|..+....+.+.. . . ..+.++|.|+|-||. .+..|++.+......+.+++++|-
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~---~-~----~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt 91 (148)
T PRK06756 20 DHIAGVIRETENEIEVIDIMDSP---E-A----SILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGS 91 (148)
T ss_pred HHHHHHHhhcCCeEEEeehhccC---C-H----HHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeC
Confidence 34566677778776555443321 1 1 124578989988754 466676665433333556666644
Q ss_pred -------------HHHHHHHHcCCCe----eEecCCCCHHHHHHHHHHH
Q 022176 263 -------------TTASAAKRLGLKN----VYYPTHPGLEGWVDSILEA 294 (301)
Q Consensus 263 -------------~Ta~al~~~G~~~----~~v~~~ps~e~ll~ai~~~ 294 (301)
...+.|++.|++. +.+.-.|+.+++ +.+.++
T Consensus 92 ~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d~-~~~~~~ 139 (148)
T PRK06756 92 CDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELTPEDEDV-EKCLQF 139 (148)
T ss_pred CCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecCCCHHHH-HHHHHH
Confidence 2344566678764 234456776553 344443
No 116
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=89.28 E-value=15 Score=32.62 Aligned_cols=179 Identities=13% Similarity=0.066 Sum_probs=94.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|+++....... +.+...+.++. -...|+||+++.. .+...++.+.+ .++++++++....
T Consensus 20 gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~---~~ipvV~~~~~~~ 91 (288)
T cd01538 20 NFEAALKELGAEVIVQNANG-----DPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAAD---AGIPVIAYDRLIL 91 (288)
T ss_pred HHHHHHHHcCCEEEEECCCC-----CHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHH---CCCCEEEECCCCC
Confidence 45566778999988755421 21212222222 2579999997643 33444454444 4688999986531
Q ss_pred HHHHHHhhcccCCCceeecCC-CCcHHHHHHHhccC----CCCCCEEEEEcCCcCh-------hHHHHHHHhCC----Ce
Q 022176 140 SIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKN----GKKKCTVLYPASAKAS-------NEIEEGLSNRG----FE 203 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~-~~~~e~L~~~l~~~----~~~~~~vLi~rg~~~~-------~~L~~~L~~~G----~~ 203 (301)
. . +....+..+ ...+..+.+.|.+. ....++++++.+.... .-+.+.+++.| ++
T Consensus 92 ~----~------~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~ 161 (288)
T cd01538 92 N----S------NVDYYVSFDNEKVGELQGQALVDGLGAKGKPPGNIELIAGSPTDNNAKLFFNGAMSVLKPLIDSGKIT 161 (288)
T ss_pred C----C------CcceEEEeChHHHHHHHHHHHHHHHhhcCCCCceEEEEECCCCCchHHHHHHHHHHHHHhccccCCee
Confidence 1 1 111111111 12344444554443 1234688888665432 23456777776 33
Q ss_pred eEEEeeeeeeeCCCCcH---H----HHHHcC-CCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHHH
Q 022176 204 VVRLNTYTTEPVHHVDQ---T----VLKQAL-SIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT 264 (301)
Q Consensus 204 v~~~~vY~~~~~~~~~~---~----~~~~~~-~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~T 264 (301)
+.. ..+. ...... + +++... ++++|+..+-..+...++.+.+.+. .++.+++.+...
T Consensus 162 ~~~-~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~I~~~~d~~a~g~~~al~~~g~~~dv~vvg~d~~~ 227 (288)
T cd01538 162 IVG-EVAT---PDWDPETAQKRMENALTANYNKVDGVLAANDGTAGGAIAALKAAGLAGKPPVTGQDAEL 227 (288)
T ss_pred EEe-cccc---CCCCHHHHHHHHHHHHHhCCCCccEEEeCCcHHHHHHHHHHHHcCCCCCceEEecCCCH
Confidence 211 1111 111111 1 122123 6899999998888888888877653 257777777643
No 117
>PRK09701 D-allose transporter subunit; Provisional
Probab=88.75 E-value=7.5 Score=35.31 Aligned_cols=185 Identities=9% Similarity=0.006 Sum_probs=95.7
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
..+.+.++++|+++..+..- ...+.+...+.++. -.++|.||+..... ....+..+.+ .+++++++|...
T Consensus 44 ~gi~~~a~~~g~~v~~~~~~---~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~---~giPvV~~~~~~ 117 (311)
T PRK09701 44 KGIEDEAKTLGVSVDIFASP---SEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWK---KGIYLVNLDEKI 117 (311)
T ss_pred HHHHHHHHHcCCeEEEecCC---CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCcEEEeCCCC
Confidence 34456677889888765211 11222222222222 25699999976432 2222333333 468899998653
Q ss_pred HH-HHHHHhhcccCCCceeecC-C-CCcHHHHHHHhccC-CCCCCEEEEEcCCcC-------hhHHHHHHHhCC-CeeEE
Q 022176 139 AS-IFEEVIQSSKCSLDVAFSP-S-KATGKILASELPKN-GKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVR 206 (301)
Q Consensus 139 a~-~L~~~~~~~~~G~~~~~~p-~-~~~~e~L~~~l~~~-~~~~~~vLi~rg~~~-------~~~L~~~L~~~G-~~v~~ 206 (301)
.. .+... .+-...++. + ...++..++.|.+. ...+++|+++.|... ..-+.+.|+++| ..+..
T Consensus 118 ~~~~~~~~-----~~~~~~~V~~d~~~~g~~aa~~L~~~~g~~~~~i~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~ 192 (311)
T PRK09701 118 DMDNLKKA-----GGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVA 192 (311)
T ss_pred Cccccccc-----CCceEEEeccchHHHHHHHHHHHHHHhCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 21 11100 011111222 2 12345555666553 222478998866543 234677888877 54321
Q ss_pred EeeeeeeeCCCCc---HHHHHH----cCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHH
Q 022176 207 LNTYTTEPVHHVD---QTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (301)
Q Consensus 207 ~~vY~~~~~~~~~---~~~~~~----~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~ 263 (301)
.+. ..... ....+. ..++|+|+..+-..+...++.+.+.+. .++.+++++..
T Consensus 193 --~~~---~~~~~~~~~~~~~~ll~~~~~~~~I~~~~d~~A~g~~~al~~~G~~~dv~vvg~d~~ 252 (311)
T PRK09701 193 --SQP---ADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGI 252 (311)
T ss_pred --ecC---CCCCHHHHHHHHHHHHHhCCCCCEEEECCcchHHHHHHHHHHcCCCCCEEEEEeCCC
Confidence 111 12211 112122 246899999999888888888876543 36777777664
No 118
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=88.49 E-value=11 Score=30.65 Aligned_cols=112 Identities=21% Similarity=0.315 Sum_probs=70.7
Q ss_pred CEEEEEcC-----CcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHH-----HHHHh
Q 022176 179 CTVLYPAS-----AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR-----SWVNL 246 (301)
Q Consensus 179 ~~vLi~rg-----~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~sav~-----~~~~~ 246 (301)
-||++..- +.+...+.+.|+..|++|......++. +++..+. ++.|+|.+.|-+... .+.+.
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp------~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~ 86 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTP------EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEA 86 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCH------HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHH
Confidence 35655433 234678999999999999877775542 3333332 688999888866532 33444
Q ss_pred hhcccCCCceEEE---ECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 247 ISDTEQWSNSVAC---IGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 247 l~~~~~~~~~i~a---IG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
+++.+..++.+++ |.+-....++++|+..++-|. .+....++.+...+..
T Consensus 87 lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pg-t~~~~~~~~v~~~l~~ 139 (143)
T COG2185 87 LREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPG-TPIEEALSDLLTRLGA 139 (143)
T ss_pred HHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCC-CCHHHHHHHHHHHHHh
Confidence 4444433455443 445566779999999977665 4566666666655544
No 119
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=88.08 E-value=3.7 Score=32.17 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=57.0
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEECh-----HHHHHHHHhhhcccCCCceEEEECH
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASP-----SAVRSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~-----sav~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
...+...|+..|++|..+-.. ++. +++.+. -.++|+|++++. ..++.+++.+++.+..++++++-|.
T Consensus 16 ~~~~~~~l~~~G~~vi~lG~~--vp~----e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 16 AKVIARALRDAGFEVIYTGLR--QTP----EEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HHHHHHHHHHCCCEEEECCCC--CCH----HHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 345667788888877555543 222 223222 247888877754 3345555556554333566665542
Q ss_pred ---HHHHHHHHcCCCeeEecCCCCHHHHHHHHH
Q 022176 263 ---TTASAAKRLGLKNVYYPTHPGLEGWVDSIL 292 (301)
Q Consensus 263 ---~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~ 292 (301)
.-.+.+.++|+...+ ....+.+.++..|.
T Consensus 90 ~~~~~~~~~~~~G~d~~~-~~~~~~~~~~~~~~ 121 (122)
T cd02071 90 IPPEDYELLKEMGVAEIF-GPGTSIEEIIDKIR 121 (122)
T ss_pred CCHHHHHHHHHCCCCEEE-CCCCCHHHHHHHHh
Confidence 234456789998755 66677888887664
No 120
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=87.31 E-value=7.2 Score=30.06 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh-----HHHHHHHHHHHHcCCCCceEEEEchh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~-----~av~~f~~~l~~~~~~~~~i~avG~~ 137 (301)
.-++..|+..|++|+++... . + .+.+.+.+. -.++|.|.+++. ..+..+.+.+++.+.+++++++-|..
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~--~--~-~~~l~~~~~-~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~ 90 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVD--V--P-PEEIVEAAK-EEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAI 90 (119)
T ss_pred HHHHHHHHHCCCEEEECCCC--C--C-HHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCC
Confidence 45677899999999776622 1 2 234545553 357888888775 23344556666654447889998887
Q ss_pred hHH---HHHHHhhcccCCCceee
Q 022176 138 TAS---IFEEVIQSSKCSLDVAF 157 (301)
Q Consensus 138 Ta~---~L~~~~~~~~~G~~~~~ 157 (301)
... .+++. |+...+
T Consensus 91 ~~~~~~~~~~~------G~D~~~ 107 (119)
T cd02067 91 VTRDFKFLKEI------GVDAYF 107 (119)
T ss_pred CChhHHHHHHc------CCeEEE
Confidence 655 55666 876533
No 121
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=87.14 E-value=7.2 Score=34.34 Aligned_cols=187 Identities=12% Similarity=0.094 Sum_probs=93.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|++++.+..- ..++.+...+.++. -.+.|.||+.+... .. .+..+.+ .++++++++....
T Consensus 20 gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~-~~~~~~~---~giPvV~~~~~~~ 92 (268)
T cd06306 20 GMVEEAKRLGVSLKLLEAG---GYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLN-EILQQVA---ASIPVIALVNDIN 92 (268)
T ss_pred HHHHHHHHcCCEEEEecCC---CCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHH-HHHHHHH---CCCCEEEeccCCC
Confidence 4446677889888765321 11121111222322 25799999986432 22 2344433 4788988865321
Q ss_pred HHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCC---CCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEe
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK---KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~---~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~ 208 (301)
. . +....+..+. ..+..+++.|.+... ..++|+++.|.... +-+.+.+++.|.++...
T Consensus 93 ~----~------~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~~i~~l~g~~~~~~~~~R~~g~~~~~~~~~~~~~~~- 161 (268)
T cd06306 93 S----P------DITAKVGVSWYEMGYQAGEYLAQRHPKGSKPAKVAWFPGPKGAGWVKAVEKGFRDALAGSAIEISAI- 161 (268)
T ss_pred C----c------ceeEEecCChHHHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCchHHHHHHHHHHHHhhcCcEEeee-
Confidence 1 1 2211122222 224445555554331 12689999775432 33567777787765331
Q ss_pred eeeeeeCCCCcHH----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEE--CHHHHHHHHH
Q 022176 209 TYTTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACI--GETTASAAKR 270 (301)
Q Consensus 209 vY~~~~~~~~~~~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aI--G~~Ta~al~~ 270 (301)
.+.. ........ +++...++|+|+.+ ...+...++.+.+.+. .++.+++. .|...+++++
T Consensus 162 ~~~~-~~~~~~~~~~~~~l~~~~~~~~i~~~-d~~a~~~~~~l~~~g~p~di~vig~~~~p~~~~~l~~ 228 (268)
T cd06306 162 KYGD-TGKEVQRKLVEEALEAHPDIDYIVGS-AVAAEAAVGILRQRGLTDQIKIVSTYLSHAVYRGLKR 228 (268)
T ss_pred ccCC-ccHHHHHHHHHHHHHhCCCcCEEeec-chhhhHHHHHHHhcCCCCCeEEEecCCCHHHHHHHHc
Confidence 1111 10111111 12222467888764 5666666666665543 35555554 4567777765
No 122
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=87.13 E-value=21 Score=31.58 Aligned_cols=188 Identities=11% Similarity=0.045 Sum_probs=91.7
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeCh-HHHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~-~av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
..+.+.++++|++++..+...-... +.+.....++. -.+.|.||++.. ......++.+.+. +.+++.+...+.
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~---~~p~V~i~~~~~ 95 (280)
T cd06303 20 ASFTARLEELNIPYELTQFSSRPGI-DHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLAS---GKTKIILQNITT 95 (280)
T ss_pred HHHHHHHHHcCCcEEEEEeccCccc-CHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhC---CCCeEEEeCCCC
Confidence 3556778889998886543321101 11111222222 257999999753 3233333444332 334455532211
Q ss_pred HHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhC-CCeeEEEeeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNR-GFEVVRLNTYT 211 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~-G~~v~~~~vY~ 211 (301)
. .+... +..++.. +..+. ..+..+++.|.+.....+++.++.+... ..-+.+.++++ |..+.. .+.
T Consensus 96 ~-~~~~~--~~~~~~~-V~~d~~~~g~~~~~~L~~~~~g~~~i~~l~~~~~~~~~~R~~gf~~al~~~~~~~~~~--~~~ 169 (280)
T cd06303 96 P-VKAWL--KHQPLLY-VGFDHAAGARLLADYFIKRYPNHARYAMLYFSPGYISTARGDTFIDCVHARNNWTLTS--EFY 169 (280)
T ss_pred C-ccccc--cCCCceE-eCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCcchhHHHHHHHHHHHhCCCceEEE--eec
Confidence 0 00000 0001111 12222 2345566666652223478888876432 23456677777 554321 221
Q ss_pred eeeCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHH
Q 022176 212 TEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (301)
Q Consensus 212 ~~~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~ 263 (301)
.....+ +.... + .++++|+.++-..+-..++.+++.+. .++.++.++..
T Consensus 170 ---~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~l~al~~~G~~~dv~vvg~d~~ 226 (280)
T cd06303 170 ---TDATRQKAYQATSDILSNNPDVDFIYACSTDIALGASDALKELGREDDILINGWGGG 226 (280)
T ss_pred ---CCCCHHHHHHHHHHHHHhCCCCcEEEECCcHHHHHHHHHHHHcCCCCCcEEEecCCC
Confidence 122111 11111 2 35899999988888777777776553 36777777653
No 123
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.93 E-value=23 Score=31.88 Aligned_cols=186 Identities=11% Similarity=0.089 Sum_probs=91.0
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CC--CccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEchhh
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DT--IFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~--~~d~IiftS~~a-v~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.+.+.++++|+++..+.. . .+.+.....+.. -. +.|+||+++... ...+++.+.+ .+++++.++...
T Consensus 21 gi~~~~~~~g~~v~~~~~---~--~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~---~giPvV~~~~~~ 92 (305)
T cd06324 21 FMQAAADDLGIELEVLYA---E--RDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEG---AGVKLFLVNSGL 92 (305)
T ss_pred HHHHHHHhcCCeEEEEeC---C--CCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHh---CCCeEEEEecCC
Confidence 455667788998776432 1 122211222212 24 799999986542 3334444443 478899998654
Q ss_pred HHH-HHHHhhc---ccCCCceeecCCC-CcHHHHHHHhccCCCC------CCEEEEEcCCcC-------hhHHHHHHHhC
Q 022176 139 ASI-FEEVIQS---SKCSLDVAFSPSK-ATGKILASELPKNGKK------KCTVLYPASAKA-------SNEIEEGLSNR 200 (301)
Q Consensus 139 a~~-L~~~~~~---~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~------~~~vLi~rg~~~-------~~~L~~~L~~~ 200 (301)
... .+.. ++ ...++-..+.++. ..++.+++.|.+.... ..+++++.+... ..-+.+.++++
T Consensus 93 ~~~~~~~~-~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~ 171 (305)
T cd06324 93 TEAQAREL-GPPREKFPDWLGQLLPNDEEAGYLMAEALISQARSVQAPGGRIDLLAISGDPTTPAAILREAGLRRALAEH 171 (305)
T ss_pred Ccchhhcc-cccccccCceeeeeccCcHHHHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCChHHHHHHHHHHHHHHHC
Confidence 221 1111 00 0001111122222 2344455555543211 125887876543 22356677777
Q ss_pred C-CeeEEEeeeeeeeCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 201 G-FEVVRLNTYTTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 201 G-~~v~~~~vY~~~~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
| ..+.. .+| .....+ ...+. + .++|+|+..+-..+...++.+.+.+. .++.+++++-.
T Consensus 172 g~~~~~~-~~~----~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vp~di~vig~D~~ 240 (305)
T cd06324 172 PDVRLRQ-VVY----AGWSEDEAYEQAENLLKRYPDVRLIWAANDQMAFGALRAAKEAGRKPGRDVLFGGVNWS 240 (305)
T ss_pred CCceEee-eec----CCCCHHHHHHHHHHHHHHCCCccEEEECCchHHHHHHHHHHHcCCCcCCCEEEEecCCC
Confidence 6 22211 122 111111 11111 2 35899988887777777777766542 25666666543
No 124
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=86.92 E-value=18 Score=31.58 Aligned_cols=175 Identities=11% Similarity=0.032 Sum_probs=92.3
Q ss_pred HHHHHHHh-CCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 64 KLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 64 ~l~~~L~~-~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
.+.+.+++ .|++++....- + ....+.+ .-...|+||+++.+. ...+.+.+ .+++++.+|.....
T Consensus 19 gi~~~~~~~~g~~~~~~~~~------~-~~~~~~l-~~~~vdGiI~~~~~~--~~~~~l~~---~~~PvV~~~~~~~~-- 83 (265)
T cd01543 19 GIARYAREHGPWSIYLEPRG------L-QEPLRWL-KDWQGDGIIARIDDP--EMAEALQK---LGIPVVDVSGSREK-- 83 (265)
T ss_pred HHHHHHHhcCCeEEEEeccc------c-hhhhhhc-cccccceEEEECCCH--HHHHHHhh---CCCCEEEEeCccCC--
Confidence 44566777 67777654321 1 1112223 235789999875321 12233333 36789999875311
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh------hHHHHHHHhCCCeeEEEeeeeeeeCC
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPVH 216 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~------~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (301)
. ++..........+..+++.|.+. ..++++++.+.... .-+.+.+++.|..+..+..+......
T Consensus 84 --~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~ 153 (265)
T cd01543 84 --P------GIPRVTTDNAAIGRMAAEHFLER--GFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQ 153 (265)
T ss_pred --C------CCCEEeeCHHHHHHHHHHHHHHC--CCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccc
Confidence 1 32221111122344455666554 34689888765442 34566778888765211111111000
Q ss_pred C--CcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 217 H--VDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 217 ~--~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
. ...+..+. + .++++|+.+|...+..+++.+.+.+. .++.+++.+..
T Consensus 154 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vigfd~~ 209 (265)
T cd01543 154 SWEEEQEELAQWLQSLPKPVGIFACTDARARQLLEACRRAGIAVPEEVAVLGVDND 209 (265)
T ss_pred cHHHHHHHHHHHHhcCCCCcEEEecChHHHHHHHHHHHHhCCCCCCceEEEeeCCc
Confidence 0 11112222 2 35899999998888888888876543 36777887754
No 125
>PLN02928 oxidoreductase family protein
Probab=86.75 E-value=25 Score=32.94 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
.|+++.++.-......+++.|+..|.+|..+
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~ 188 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVKLLAT 188 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEE
Confidence 6789999998888888999999999876543
No 126
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=86.06 E-value=39 Score=33.71 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=82.7
Q ss_pred CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 128 ~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
+..++.-.-+|++.|++++ .++|+.+ +.++-+++..|......+.++.++.-...-..
T Consensus 64 ~~dviIsrG~ta~~i~~~~-----~iPVv~i--~~s~~Dil~al~~a~~~~~~iavv~~~~~~~~--------------- 121 (538)
T PRK15424 64 RCDAIIAAGSNGAYLKSRL-----SVPVILI--KPSGFDVMQALARARKLTSSIGVVTYQETIPA--------------- 121 (538)
T ss_pred CCcEEEECchHHHHHHhhC-----CCCEEEe--cCCHhHHHHHHHHHHhcCCcEEEEecCcccHH---------------
Confidence 4556666667888888875 6666544 34555666666443223345555444332111
Q ss_pred eeeeeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHH
Q 022176 208 NTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 286 (301)
Q Consensus 208 ~vY~~~~~~~~~~~~~~~~-~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ 286 (301)
...+.+.+ -+++...+.+...++..+..+++. ++.++.-|-.+.+.++++|..-+++- +.+.
T Consensus 122 -----------~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~---G~~~vvG~~~~~~~A~~~g~~g~~~~---s~e~ 184 (538)
T PRK15424 122 -----------LVAFQKTFNLRIEQRSYVTEEDARGQINELKAN---GIEAVVGAGLITDLAEEAGMTGIFIY---SAAT 184 (538)
T ss_pred -----------HHHHHHHhCCceEEEEecCHHHHHHHHHHHHHC---CCCEEEcCchHHHHHHHhCCceEEec---CHHH
Confidence 11122222 367788888888899888888764 46666555578888999999876653 5688
Q ss_pred HHHHHHHHHH
Q 022176 287 WVDSILEALR 296 (301)
Q Consensus 287 ll~ai~~~~~ 296 (301)
+.+++.+.+.
T Consensus 185 i~~a~~~A~~ 194 (538)
T PRK15424 185 VRQAFEDALD 194 (538)
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 127
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=85.56 E-value=28 Score=31.58 Aligned_cols=171 Identities=11% Similarity=-0.056 Sum_probs=91.7
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~ 143 (301)
.+...++++|+++..+. . .+.+ . .....|.||+++...- ...+.+.+ .+.+++.++....
T Consensus 88 ~i~~~~~~~g~~~~~~~----~--~~~~-----~-~~~~vDgiI~~~~~~~-~~~~~l~~---~~~pvV~~~~~~~---- 147 (327)
T PRK10339 88 GIETQCEKLGIELTNCY----E--HSGL-----P-DIKNVTGILIVGKPTP-ALRAAASA---LTDNICFIDFHEP---- 147 (327)
T ss_pred HHHHHHHHCCCEEEEee----c--cccc-----c-ccccCCEEEEeCCCCH-HHHHHHHh---cCCCEEEEeCCCC----
Confidence 34456778898876431 1 1111 1 2467999999874322 23344443 2567888876421
Q ss_pred HHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeeeCC
Q 022176 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (301)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (301)
.. ++..+.......+..+++.|.+. ..++|.++.+... ...+.+.+...|. +..-.+|......
T Consensus 148 ~~------~~~~V~~D~~~~~~~a~~~l~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~-~~~~~~~~~~~~~ 218 (327)
T PRK10339 148 GS------GYDAVDIDLARISKEIIDFYINQ--GVNRIGFIGGEDEPGKADIREVAFAEYGRLKQV-VREEDIWRGGFSS 218 (327)
T ss_pred CC------CCCEEEECHHHHHHHHHHHHHHC--CCCeEEEeCCccccchhhHHHHHHHHHHHHcCC-CChhheeecCcCh
Confidence 12 33322222223345566677664 3468999976532 1224455666775 2221223211111
Q ss_pred CCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 217 HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 217 ~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
....+..+. + ..+++|++++-..+..++..+.+.+. .++.+++++..
T Consensus 219 ~~~~~~~~~~l~~~~~~~ai~~~~D~~A~g~~~al~~~g~~vP~di~vigfD~~ 272 (327)
T PRK10339 219 SSGYELAKQMLAREDYPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDI 272 (327)
T ss_pred hHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeCCh
Confidence 111122222 2 35799999998888888888877652 36777888654
No 128
>PRK10537 voltage-gated potassium channel; Provisional
Probab=85.49 E-value=11 Score=35.95 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=68.0
Q ss_pred CCEEEEEcCCcChhHHHHHHHhCCCeeEEEeee----------eeeeCCCCcHHHHHH--cCCCCEEEEEChHHHHHHHH
Q 022176 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY----------TTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVN 245 (301)
Q Consensus 178 ~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY----------~~~~~~~~~~~~~~~--~~~~d~I~ftS~sav~~~~~ 245 (301)
..++++++...-...+.+.|++.|.++..+.-- ..+.-+...++.+++ +++.++++.++.+..++..-
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i 319 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV 319 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence 356777777777777888888887766444310 011111122334444 35888999988877666654
Q ss_pred hhhccc-CCCceEE--EECHHHHHHHHHcCCCeeEecCCCCHHHHHHHH
Q 022176 246 LISDTE-QWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 291 (301)
Q Consensus 246 ~l~~~~-~~~~~i~--aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai 291 (301)
.+.... ..+.+++ +-.+.-.+.+++.|...++.|..-..+.|.+.+
T Consensus 320 vL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l~g~~la~~l 368 (393)
T PRK10537 320 VLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQLLGSELLARTL 368 (393)
T ss_pred HHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHHHHHHHHHHHHh
Confidence 332211 1234444 558888899999999887766554444454443
No 129
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=85.38 E-value=10 Score=28.58 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=52.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCcC--hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHH
Q 022176 164 GKILASELPKNGKKKCTVLYPASAKA--SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR 241 (301)
Q Consensus 164 ~e~L~~~l~~~~~~~~~vLi~rg~~~--~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~ 241 (301)
+.+.++.|.+. ++++.++.-+.. +..+.+.|++.|+.+ + .+ =++||..++.
T Consensus 19 a~e~l~~L~~~---g~~~~~lTNns~~s~~~~~~~L~~~Gi~~-----------~--~~-----------~i~ts~~~~~ 71 (101)
T PF13344_consen 19 AVEALDALRER---GKPVVFLTNNSSRSREEYAKKLKKLGIPV-----------D--ED-----------EIITSGMAAA 71 (101)
T ss_dssp HHHHHHHHHHT---TSEEEEEES-SSS-HHHHHHHHHHTTTT---------------GG-----------GEEEHHHHHH
T ss_pred HHHHHHHHHHc---CCCEEEEeCCCCCCHHHHHHHHHhcCcCC-----------C--cC-----------EEEChHHHHH
Confidence 55566777763 578888877654 468999999999764 0 01 2578888888
Q ss_pred HHHHhhhcccCCCceEEEECH-HHHHHHHHcCCC
Q 022176 242 SWVNLISDTEQWSNSVACIGE-TTASAAKRLGLK 274 (301)
Q Consensus 242 ~~~~~l~~~~~~~~~i~aIG~-~Ta~al~~~G~~ 274 (301)
.+++.... ..+++++|. ...+.+++.|++
T Consensus 72 ~~l~~~~~----~~~v~vlG~~~l~~~l~~~G~e 101 (101)
T PF13344_consen 72 EYLKEHKG----GKKVYVLGSDGLREELREAGFE 101 (101)
T ss_dssp HHHHHHTT----SSEEEEES-HHHHHHHHHTTEE
T ss_pred HHHHhcCC----CCEEEEEcCHHHHHHHHHcCCC
Confidence 88776321 456777765 667778888863
No 130
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.27 E-value=13 Score=33.90 Aligned_cols=151 Identities=15% Similarity=0.043 Sum_probs=84.2
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH--HHH--HHHHHHHc-CCCCceEEEEchhh
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--GSV--FLEAWKEA-GTPNVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a--v~~--f~~~l~~~-~~~~~~i~avG~~T 138 (301)
.-.+.+++.|++..+.++-+.....+...+-+.+....+++.|.+|-|-- +.. +++.+... ..+.+.-.-.|.-
T Consensus 53 ~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n~G~l- 131 (283)
T PRK14192 53 MKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRM- 131 (283)
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccccCcc-
Confidence 34456778899999888743222111122223333445789999999943 322 33333111 0122222222211
Q ss_pred HHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcCCc-ChhHHHHHHHhCCCeeEEEeeeeeeeC
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPV 215 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (301)
. . |- ..+.| .|..++++.|.... ..|++++++...+ ....+...|.+.|++|+ ++.+.
T Consensus 132 ---~--~------~~-~~~~p--~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVt---v~~~~-- 192 (283)
T PRK14192 132 ---A--M------GE-AAYGS--ATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVT---ICHSR-- 192 (283)
T ss_pred ---c--c------CC-CcccC--CcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEE---EEeCC--
Confidence 0 1 21 11333 35578888776543 3788988887776 77788999999998654 33331
Q ss_pred CCCcHHHHHHcCCCCEEEEECh
Q 022176 216 HHVDQTVLKQALSIPVVAVASP 237 (301)
Q Consensus 216 ~~~~~~~~~~~~~~d~I~ftS~ 237 (301)
...+.+.+.+.|+|+-+.+
T Consensus 193 ---t~~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 193 ---TQNLPELVKQADIIVGAVG 211 (283)
T ss_pred ---chhHHHHhccCCEEEEccC
Confidence 1223334578999988884
No 131
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.82 E-value=25 Score=33.77 Aligned_cols=173 Identities=12% Similarity=0.040 Sum_probs=97.0
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCC-cEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHH
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKE 123 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~-~f~~~l~~ 123 (301)
-|..+++|+++.+-. +...+.|++.|+ ++...+. ..+.+++ .+.+.++|.+++.+..-+. .+++ .
T Consensus 6 ~~~~~~~ili~~~~~--~~~~~~l~~~~~~~v~~~~~-----~~~~~~~---~~~~~~~d~l~~~~~~~~~~~~l~---~ 72 (409)
T PRK11790 6 LPKDKIKFLLLEGVH--QSAVEVLRAAGYTNIEYHKG-----ALDEEEL---IEAIKDAHFIGIRSRTQLTEEVLA---A 72 (409)
T ss_pred CCCCCeEEEEECCCC--HHHHHHHHhcCCceEEECCC-----CCCHHHH---HHHcCCCCEEEEeCCCCCCHHHHh---h
Confidence 455678999997543 555677888887 6554321 1122333 3356789988776542222 1222 2
Q ss_pred cCCCCceEEE---Echh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHHH--------hcc------------C----
Q 022176 124 AGTPNVRIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE--------LPK------------N---- 174 (301)
Q Consensus 124 ~~~~~~~i~a---vG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~--------l~~------------~---- 174 (301)
.+++++++ +|-. -.+++.+. |+.+.-.|.. ++..+++. ..+ |
T Consensus 73 --~~~Lk~I~~~~~G~d~id~~~~~~~------gI~V~n~pg~-~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~ 143 (409)
T PRK11790 73 --AEKLVAIGCFCIGTNQVDLDAAAKR------GIPVFNAPFS-NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA 143 (409)
T ss_pred --CCCCeEEEECceecccccHHHHHhC------CCEEEeCCCC-ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc
Confidence 23555543 4443 23566777 9988666542 33332221 010 1
Q ss_pred ----CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCC--cHHHHHHcCCCCEEEEEChHHH
Q 022176 175 ----GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPSAV 240 (301)
Q Consensus 175 ----~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~--~~~~~~~~~~~d~I~ftS~sav 240 (301)
...|+++.+++-......+++.++..|.+|..+..+........ ...+.+.+.+.|+|.+.-|.+-
T Consensus 144 ~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~ 215 (409)
T PRK11790 144 AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETP 215 (409)
T ss_pred cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCCh
Confidence 12677899998888888899999999998765554322111100 0112222467899999887654
No 132
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.57 E-value=26 Score=30.48 Aligned_cols=146 Identities=8% Similarity=0.050 Sum_probs=77.7
Q ss_pred CCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCC
Q 022176 101 TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKK 177 (301)
Q Consensus 101 ~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~ 177 (301)
.+.|.||+.+.. +..-.++.+.+ .+++++.+|.... .. . ..+..+. ..++.+++.|.+....
T Consensus 56 ~~~dgiIi~~~~~~~~~~~i~~~~~---~~ipvv~~~~~~~----~~------~--~~V~~d~~~~g~~~~~~l~~~~~g 120 (271)
T cd06321 56 AKVDLILLNAVDSKGIAPAVKRAQA---AGIVVVAVDVAAE----GA------D--ATVTTDNVQAGEISCQYLADRLGG 120 (271)
T ss_pred hCCCEEEEeCCChhHhHHHHHHHHH---CCCeEEEecCCCC----Cc------c--ceeeechHHHHHHHHHHHHHHhCC
Confidence 578999987643 22333444433 4688999986421 11 1 1112222 2345555666554223
Q ss_pred CCEEEEEcCCcC------hhHHHHHHHhC-CCeeEEEeeeeeeeCCCCcHH----HHHHcCCCCEEEEEChHHHHHHHHh
Q 022176 178 KCTVLYPASAKA------SNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNL 246 (301)
Q Consensus 178 ~~~vLi~rg~~~------~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~----~~~~~~~~d~I~ftS~sav~~~~~~ 246 (301)
.++|+++.|... ..-+.+.+++. |...... .+..........+ +++...++++|+..+-..+..+++.
T Consensus 121 ~~~i~~i~g~~~~~~~~R~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 199 (271)
T cd06321 121 KGNVAILNGPPVSAVLDRVAGCKAALAKYPGIKLLSD-DQNGKGSRDGGLRVMQGLLTRFPKLDGVFAINDPTAIGADLA 199 (271)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEee-ecCCCCChhhHHHHHHHHHHhCCCCCEEEECCchhHHHHHHH
Confidence 468999977543 13345556666 4432111 1111100011111 1222246899999998888888888
Q ss_pred hhcccCCCceEEEECH
Q 022176 247 ISDTEQWSNSVACIGE 262 (301)
Q Consensus 247 l~~~~~~~~~i~aIG~ 262 (301)
+.+.+..++.+++++.
T Consensus 200 l~~~g~~di~v~g~d~ 215 (271)
T cd06321 200 AKQAGRNDIKITSVDG 215 (271)
T ss_pred HHHcCCCCcEEEEecC
Confidence 8776655677777753
No 133
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=84.56 E-value=21 Score=31.24 Aligned_cols=177 Identities=11% Similarity=0.059 Sum_probs=88.9
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.+++.|+++...... +.+...+.++. ....|.||+++.+.-..+.+.+.+ ..+++++.++..+..
T Consensus 22 gi~~~~~~~gy~~~~~~~~------~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~--~~~ipvv~~~~~~~~- 92 (260)
T cd06304 22 GLEKAEKELGVEVKYVESV------EDADYEPNLRQLAAQGYDLIFGVGFGFMDAVEKVAKE--YPDVKFAIIDGVVDA- 92 (260)
T ss_pred HHHHHHHhcCceEEEEecC------CHHHHHHHHHHHHHcCCCEEEECCcchhHHHHHHHHH--CCCCEEEEecCccCC-
Confidence 4446677789887764322 11111222222 256899999876633334343332 135789999865421
Q ss_pred HHHHhhcccCCCceeecCCCCc-HHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
.. .+.. +..+.+. +.... .+.......++|.++.+... ..-+.+.++++|........+....
T Consensus 93 --~~------~~~~-v~~d~~~~~~~a~-~l~~~~~g~~~I~~i~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~ 162 (260)
T cd06304 93 --PP------NVAS-YVFREYEGSYLAG-VLAALMTKTGKVGFVGGMPIPEVNRFINGFAAGAKSVNPDITVLVIYTGSF 162 (260)
T ss_pred --CC------Ceee-eecchHHHHHHHH-HHHHHhccCCceEEEeccccHHHHHHHHHHHHHHHHhCCCcEEEEEEecCc
Confidence 02 2222 1222222 22222 23222113468888866432 2245667778886554433332111
Q ss_pred CCC-CcHHHHHH-c-CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECH
Q 022176 215 VHH-VDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 215 ~~~-~~~~~~~~-~-~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
... ...+..+. + ..+|+|+.++-..+...++.+.+.+ +.++.++.
T Consensus 163 ~~~~~~~~~~~~~l~~~~~ai~~~~d~~A~gv~~al~~~g---v~vigfD~ 210 (260)
T cd06304 163 FDPAKGKEAALALIDQGADVIFAAAGGTGPGVIQAAKEAG---VYAIGVDS 210 (260)
T ss_pred cCcHHHHHHHHHHHhCCCCEEEEcCCCCchHHHHHHHHcC---CEEEeecC
Confidence 111 11122222 2 3479988888777777777776644 55555554
No 134
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=84.47 E-value=12 Score=35.52 Aligned_cols=163 Identities=9% Similarity=0.054 Sum_probs=91.4
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCce
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~ 130 (301)
|+|++....+ ...+.|++.| ++...|-.. ... + .+.++|.++..|..-+..-+ + . .+++|
T Consensus 1 mkIl~d~~~~---~~~~~~~~~~-ev~~~~~~~-----~~~---~---~l~daD~liv~s~t~v~~~l--l-~--~~~Lk 60 (378)
T PRK15438 1 MKILVDENMP---YARELFSRLG-EVKAVPGRP-----IPV---A---QLADADALMVRSVTKVNESL--L-A--GKPIK 60 (378)
T ss_pred CEEEEeCCcc---hHHHHHhhcC-cEEEeCCCC-----CCH---H---HhCCCcEEEEcCCCCCCHHH--h-c--CCCCe
Confidence 4688875433 3335565554 777655311 111 1 25779999887765443211 2 2 13555
Q ss_pred EEE---Echhh--HHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------hcc---CCCCCCEEEEEcCCcChhHHHH
Q 022176 131 IGV---VGAGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPK---NGKKKCTVLYPASAKASNEIEE 195 (301)
Q Consensus 131 i~a---vG~~T--a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l~~---~~~~~~~vLi~rg~~~~~~L~~ 195 (301)
++. +|-.- .+++.+. |+.+.-.|. .++..+++. +.+ ....+++|.+++-......+++
T Consensus 61 ~I~~~~~G~D~iD~~~~~~~------gI~v~napg-~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~ 133 (378)
T PRK15438 61 FVGTATAGTDHVDEAWLKQA------GIGFSAAPG-CNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQA 133 (378)
T ss_pred EEEECcccccccCHHHHHHC------CCEEEECCC-cCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHH
Confidence 543 33221 2567777 998766654 333333332 112 1237889999999888889999
Q ss_pred HHHhCCCeeEEEeeeeeeeCCC-CcHHHHHHcCCCCEEEEEChHHH
Q 022176 196 GLSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVASPSAV 240 (301)
Q Consensus 196 ~L~~~G~~v~~~~vY~~~~~~~-~~~~~~~~~~~~d~I~ftS~sav 240 (301)
.|+..|.+|..+.-++...... ....+-+.+.+.|+|++..|.+-
T Consensus 134 ~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~ 179 (378)
T PRK15438 134 RLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFK 179 (378)
T ss_pred HHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCC
Confidence 9999999876554332211110 00112222467899999888543
No 135
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=83.90 E-value=11 Score=37.57 Aligned_cols=115 Identities=11% Similarity=0.100 Sum_probs=66.8
Q ss_pred CEEEEEcCCcChhHHHHHHHhCCCeeEEEeee------------eeeeCCCCcHHHHHH--cCCCCEEEEEChHHHHH--
Q 022176 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTY------------TTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRS-- 242 (301)
Q Consensus 179 ~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY------------~~~~~~~~~~~~~~~--~~~~d~I~ftS~sav~~-- 242 (301)
.+++++....-...+.+.|+++|.++.-++.= ....-+...++.+++ .++.|.++.+.++..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 57788887777778899999888877544321 111112222334443 35889888876654443
Q ss_pred HHHhhhcccCCCceEE--EECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 243 WVNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 243 ~~~~l~~~~~~~~~i~--aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
.....++.. .+.+++ +-.+...+.+++.|.+.++.|++ .+.+.+.+.+..+
T Consensus 498 iv~~~~~~~-~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~----~~a~~i~~~l~~~ 550 (558)
T PRK10669 498 IVASAREKR-PDIEIIARAHYDDEVAYITERGANQVVMGER----EIARTMLELLETP 550 (558)
T ss_pred HHHHHHHHC-CCCeEEEEECCHHHHHHHHHcCCCEEEChHH----HHHHHHHHHhcCC
Confidence 333333321 244444 44677778889999998775544 3444444444433
No 136
>PRK06756 flavodoxin; Provisional
Probab=83.76 E-value=5.9 Score=31.88 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH--------HHHHHHHHHHHcCCCCceEEEE
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVV 134 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~--------av~~f~~~l~~~~~~~~~i~av 134 (301)
..+++.|++.|.++...++.+.. . . ..+.++|.|+|-|+. .+..|++.+....+.+.++++.
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~---~---~----~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~f 89 (148)
T PRK06756 20 DHIAGVIRETENEIEVIDIMDSP---E---A----SILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVF 89 (148)
T ss_pred HHHHHHHhhcCCeEEEeehhccC---C---H----HHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEE
Confidence 44455666678777655443221 1 1 135689999998765 2566666665445678888888
Q ss_pred chhh
Q 022176 135 GAGT 138 (301)
Q Consensus 135 G~~T 138 (301)
|-.+
T Consensus 90 gt~~ 93 (148)
T PRK06756 90 GSCD 93 (148)
T ss_pred eCCC
Confidence 7733
No 137
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=83.66 E-value=37 Score=31.49 Aligned_cols=171 Identities=9% Similarity=0.079 Sum_probs=91.2
Q ss_pred CeEEEeCCCCchH-HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh-HHHHHHHHHHHHcCCCC
Q 022176 51 PKVVVTRERGKNG-KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-EAGSVFLEAWKEAGTPN 128 (301)
Q Consensus 51 ~~IlitR~~~~~~-~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~-~av~~f~~~l~~~~~~~ 128 (301)
|+|++.-.++... -..+.++++|+++...+. +.+ +++ ++.+.++|.|++.+. .--+.+++.+.+. +
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~~--~~~---~~~~~~~d~ii~~~~~~~~~~~l~~~~~~---~ 69 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKE----LLS--SAT---VDQLKDYDGVTTMQFGKLENDVYPKLESY---G 69 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCC----CCC--HHH---HHHhCCCCEEEEecCCCCCHHHHHhhhhc---C
Confidence 6778765544333 444566777776665432 222 222 335688998876432 2222234444322 3
Q ss_pred ceEEE---Echhh--HHHHHHHhhcccCCCceeecCCCCcHHHHHHH-----------h-------cc----C-------
Q 022176 129 VRIGV---VGAGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----------L-------PK----N------- 174 (301)
Q Consensus 129 ~~i~a---vG~~T--a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----------l-------~~----~------- 174 (301)
+|+++ +|-.. .+++++. |+.+.-+|. ++++.+++. + .. +
T Consensus 70 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~~~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~ 142 (330)
T PRK12480 70 IKQIAQRTAGFDMYDLDLAKKH------NIVISNVPS-YSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSK 142 (330)
T ss_pred ceEEEecccccchhhHHHHHHC------CCEEEeCCC-CChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCcc
Confidence 44433 44332 2345566 888766654 233222211 0 00 1
Q ss_pred CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCC--CcHHHHHHcCCCCEEEEEChHHH
Q 022176 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSAV 240 (301)
Q Consensus 175 ~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~I~ftS~sav 240 (301)
...+++|.++........++..|...|.+|..+..+....... ....+.+.+.+.|+|++.-|.+-
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~ 210 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANK 210 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcH
Confidence 1256788898888878889999999998775544332211110 00012223467899999888764
No 138
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=83.61 E-value=22 Score=32.89 Aligned_cols=175 Identities=12% Similarity=0.090 Sum_probs=82.9
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeC-CCchHHHHHHhc--CCCccEEEEeC--hHHHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQG-PDTDRLSSVLNA--DTIFDWIIITS--PEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~-~d~~~l~~~l~~--l~~~d~IiftS--~~av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
-+.+..+++|+++... .+. .+.+...+.++. -.++|.|+++. ++++...++.+.+ .+++++++....
T Consensus 44 Gi~~aa~~~G~~v~~~-----~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~---~gIpVV~~d~~~ 115 (336)
T PRK15408 44 GAKEAGKELGVDVTYD-----GPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQ---RGVKVLTWDSDT 115 (336)
T ss_pred HHHHHHHHhCCEEEEE-----CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHH---CCCeEEEeCCCC
Confidence 3456677889888641 111 122211122222 26799999974 3444555554444 468888887653
Q ss_pred HHHHHHHhhcccCCCceeecC-CC--CcHHHHHHHhccCCC-CCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEE
Q 022176 139 ASIFEEVIQSSKCSLDVAFSP-SK--ATGKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p-~~--~~~e~L~~~l~~~~~-~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~ 207 (301)
... . ...++. .. ..++.+.+.+.+... .+++|+++.|.... +.+.+.+.+.+-.+..+
T Consensus 116 ~~~----------~-~~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv 184 (336)
T PRK15408 116 KPE----------C-RSYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIV 184 (336)
T ss_pred CCc----------c-ceEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEE
Confidence 211 1 111221 11 123333344433322 34789888775431 23444554332222222
Q ss_pred eeeeeeeCCCCcHH-------HHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEE
Q 022176 208 NTYTTEPVHHVDQT-------VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI 260 (301)
Q Consensus 208 ~vY~~~~~~~~~~~-------~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aI 260 (301)
.. .....+.+. ++....++|+|+..+..++....+.+++.+..++.++.+
T Consensus 185 ~~---~~~~~d~~~a~~~~~~lL~~~pdi~aI~~~~~~~~~Ga~~Al~~~g~~~v~VvG~ 241 (336)
T PRK15408 185 TT---QFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKRDKVAIVGF 241 (336)
T ss_pred ee---cCCCCcHHHHHHHHHHHHHHCCCCcEEEECCCccHHHHHHHHHhCCCCCEEEEEe
Confidence 22 222222221 222225788888877666655555555543224444444
No 139
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.14 E-value=13 Score=35.60 Aligned_cols=105 Identities=10% Similarity=0.067 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeee--------------eeeCCCCcHHHHHH--cCCCCEEEEEChHHH
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT--------------TEPVHHVDQTVLKQ--ALSIPVVAVASPSAV 240 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~--------------~~~~~~~~~~~~~~--~~~~d~I~ftS~sav 240 (301)
..++++++....-...+.+.|.+.|.+|.-+..-. ...-+....+.+++ ..++++++.+++..-
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 45789999998888889999999998875552211 11111111233333 357888888877544
Q ss_pred HHHHH-hh-hcccCCCceEEEECHHHHHHHHHcCCCeeEecCC
Q 022176 241 RSWVN-LI-SDTEQWSNSVACIGETTASAAKRLGLKNVYYPTH 281 (301)
Q Consensus 241 ~~~~~-~l-~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ 281 (301)
.+..- .+ ++.+...+-+.+-.+.-.+.++.+|...++.|..
T Consensus 310 ~n~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~g~~~vi~p~~ 352 (453)
T PRK09496 310 ANILSSLLAKRLGAKKVIALVNRPAYVDLVEGLGIDIAISPRQ 352 (453)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCcchHHHHHhcCCCEEECHHH
Confidence 44332 22 2222122333345666678888899877654443
No 140
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.76 E-value=32 Score=30.05 Aligned_cols=153 Identities=10% Similarity=0.072 Sum_probs=79.9
Q ss_pred CCccEEEEeCh--HHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCC-ceeecCCCC-cHHHHHHHhccCCC
Q 022176 101 TIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSL-DVAFSPSKA-TGKILASELPKNGK 176 (301)
Q Consensus 101 ~~~d~IiftS~--~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~-~~~~~p~~~-~~e~L~~~l~~~~~ 176 (301)
.+.|.||+.+. .++...++.+.+ .+++++.++..... . +. ...+.++.+ .+...++.|.+...
T Consensus 59 ~~vDgiii~~~~~~~~~~~i~~~~~---~gIpvV~~d~~~~~----~------~~~~~~V~~d~~~~g~~aa~~l~~~~~ 125 (274)
T cd06311 59 RKIDALVILPFESAPLTQPVAKAKK---AGIFVVVVDRGLSS----P------GAQDLYVAGDNYGMGRVAGEYIATKLG 125 (274)
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHH---CCCeEEEEcCCCCC----C------cccceEEcCCcHHHHHHHHHHHHHHhC
Confidence 46899998864 333334444433 47889888753211 1 11 111222222 23444555555422
Q ss_pred CCCEEEEEcCCcC------hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHH
Q 022176 177 KKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSW 243 (301)
Q Consensus 177 ~~~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~ 243 (301)
..++|+++.+... ..-+.+.|+++|.++.. .+. .+...+ + +++...++++|+..+-..+...
T Consensus 126 g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~---~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~ 200 (274)
T cd06311 126 GNGNIVVLRGIPTPIDNERVDAFDAAIAKYPIKILD--RQY---ANWNRDDAFSVMQDLLTKFPKIDAVWAHDDDMAVGV 200 (274)
T ss_pred CCCeEEEEECCCCcchhHHHHHHHHHHhhCCcEEEe--ccC---CCCcHHHHHHHHHHHHHhCCCcCEEEECCCcHHHHH
Confidence 3468998876432 23466777788754432 111 122211 1 1211245889999988888788
Q ss_pred HHhhhcccCC-CceEEEE--CHHHHHHHHHcC
Q 022176 244 VNLISDTEQW-SNSVACI--GETTASAAKRLG 272 (301)
Q Consensus 244 ~~~l~~~~~~-~~~i~aI--G~~Ta~al~~~G 272 (301)
++.+++.+.. ++.+++. .+.+.+++++ |
T Consensus 201 ~~al~~~g~~~~~~ivg~d~~~~~~~~i~~-g 231 (274)
T cd06311 201 LAAIKQAGRTDIKFVVGGAGSKDMIKMIMD-G 231 (274)
T ss_pred HHHHHHcCCCCCceEEEeCCCHHHHHHHHC-C
Confidence 8887765532 3455543 2344444443 5
No 141
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=82.74 E-value=32 Score=30.76 Aligned_cols=186 Identities=12% Similarity=0.080 Sum_probs=88.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|+++.....-. ..+.+...+.++. -.++|.||+.+.. ++...++.+ . .+++++.++....
T Consensus 20 gi~~~a~~~g~~v~~~~~~~---~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~-~---~~iPvV~~~~~~~ 92 (295)
T TIGR02955 20 GMVEQAKHLGVELKVLEAGG---YPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQL-T---KSIPVFALVNQID 92 (295)
T ss_pred HHHHHHHHhCCEEEEEcCCC---CCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHH-h---cCCCEEEEecCCC
Confidence 34456677899887654211 0111111222222 3689999997642 222222222 1 3678887743321
Q ss_pred HHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCC---CCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEe
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK---KKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~---~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~ 208 (301)
.. . .+.. +..+. ..+..+++.|.+... ..++|+++.|... ..-+.+.|++.|+.+.. .
T Consensus 93 ~~---~------~~~~-V~~D~~~~g~~~~~~L~~~~~~~~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~-~ 161 (295)
T TIGR02955 93 SN---Q------VKGR-VGVDWYQMGYQAGEYLAQRHPKGSGPTTLAWLPGPKNRGGTKPVTQGFRAALEGSDVEISA-I 161 (295)
T ss_pred cc---c------eeEE-EeecHHHHHHHHHHHHHHhcccCCCCeeEEEEeCCCcCCchhHHHHHHHHHHhcCCcEEEE-E
Confidence 11 1 1111 11121 234445555544211 1357998876543 23466778888876543 1
Q ss_pred eeeeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEE--ECHHHHHHHHHcCC
Q 022176 209 TYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVAC--IGETTASAAKRLGL 273 (301)
Q Consensus 209 vY~~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~a--IG~~Ta~al~~~G~ 273 (301)
.+ .....+ + +++....+|+| +.+-..+...++.+...+. .++.+++ .+|.+..++++ |.
T Consensus 162 ~~----~~~~~~~~~~~~~~~L~~~~~~d~i-~~~d~~a~g~l~al~~~g~~~dv~vvg~~~~p~~~~~l~~-g~ 230 (295)
T TIGR02955 162 LW----ADNDKELQRNLLQDLLKKHPDIDYL-VGSAVAAEAAISELRSLHMTQQIKLVSTYLSHGVYRGLKR-GK 230 (295)
T ss_pred ec----CCCcHHHHHHHHHHHHHhCCCcCEE-EeccHHHHHHHHHHHhhCccCCeEEEEecCCHHHHHHHHc-Cc
Confidence 11 111111 1 22222457876 5565555556665544332 2444544 35666666664 54
No 142
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=82.30 E-value=37 Score=30.48 Aligned_cols=185 Identities=8% Similarity=0.043 Sum_probs=88.2
Q ss_pred HHHHHHHh--CCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeC--hHHHHHHHHHHHHcCCCCceEEEEchh
Q 022176 64 KLIKALAK--HRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITS--PEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (301)
Q Consensus 64 ~l~~~L~~--~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS--~~av~~f~~~l~~~~~~~~~i~avG~~ 137 (301)
.+.+.+++ .|+++...+.- .+.+...+.++. -.+.|.||+.. +.++...++.+.. .++++++++..
T Consensus 20 gi~~~a~~~~~g~~~~~~~~~-----~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~---~giPvV~~~~~ 91 (303)
T cd01539 20 NLEDIQKENGGKVEFTFYDAK-----NNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQ---KNIPVIFFNRE 91 (303)
T ss_pred HHHHHHHhhCCCeeEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHH---CCCCEEEeCCC
Confidence 44555666 67666655421 122211222222 35799998874 3344444454443 46789999865
Q ss_pred hHHH-HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCC---------CCC--EEEEEcCCcCh-------hHHHHHH
Q 022176 138 TASI-FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK---------KKC--TVLYPASAKAS-------NEIEEGL 197 (301)
Q Consensus 138 Ta~~-L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~---------~~~--~vLi~rg~~~~-------~~L~~~L 197 (301)
.... .... ..+.. +..+. ..++.+++.|..... ..+ .++++.+.... .-+.+.|
T Consensus 92 ~~~~~~~~~-----~~~~~-V~~d~~~~g~~~a~~l~~~~~~~~~~~~~~~~g~~~i~~~~g~~~~~~~~~R~~gf~~~l 165 (303)
T cd01539 92 PEEEDIKSY-----DKAYY-VGTDAEQSGILQGKLIADYWNANKDALDKNGDGIIQYVMLKGEPGHPDAIARTKYSIETL 165 (303)
T ss_pred Ccccccccc-----cccce-eeecHHHHHHHHHHHHHHHhhccccccccCCCCceEEEEEEcCCCCchhhhhhhhHHHHH
Confidence 3211 1111 01111 12222 223444455533210 012 35666665432 2356788
Q ss_pred HhCCCeeEEEeeeeeeeCCCCcHHHHHH-c----CCCCEEEEEChHHHHHHHHhhhcccC------CCceEEEECH
Q 022176 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQ-A----LSIPVVAVASPSAVRSWVNLISDTEQ------WSNSVACIGE 262 (301)
Q Consensus 198 ~~~G~~v~~~~vY~~~~~~~~~~~~~~~-~----~~~d~I~ftS~sav~~~~~~l~~~~~------~~~~i~aIG~ 262 (301)
+++|..+....+...........+..+. + .++++|+..+...+-..++.+.+.+. .++.+++++-
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p~~~~di~iig~d~ 241 (303)
T cd01539 166 NDAGIKTEELASDTANWDRAQAKDKMDALLLKYGDKIEAVIANNDAMALGAIEALQKYGYNKGDKSKNIPVVGVDA 241 (303)
T ss_pred HhcCCCeEEEEeecCCCCHHHHHHHHHHHHHhcCCCccEEEECCchHHHHHHHHHHHcCCCcCCCCCceEEEccCC
Confidence 8888765443332211111111111121 2 24789888887777677777665442 2567777653
No 143
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=82.10 E-value=45 Score=32.07 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=30.4
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEec
Q 022176 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELP 80 (301)
Q Consensus 44 ~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P 80 (301)
.++|+.|.+|...-+-+ +...|...|.+.|++|....
T Consensus 30 ~~~p~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~ 67 (413)
T cd00401 30 ASKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSS 67 (413)
T ss_pred ccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEc
Confidence 45999999999887654 66789999999999987654
No 144
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=81.83 E-value=2.2 Score=34.33 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCC-----------CchHHHHHHhcCCCccEEEEeChH-------HHHHHHHHHH--
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGP-----------DTDRLSSVLNADTIFDWIIITSPE-------AGSVFLEAWK-- 122 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~-----------d~~~l~~~l~~l~~~d~IiftS~~-------av~~f~~~l~-- 122 (301)
+.+.+.+++.|+++..+.+-+. +.+ ..+.+...++.+...|.|||-||. .++.|++.+.
T Consensus 21 ~~~~~~l~~~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~ 99 (152)
T PF03358_consen 21 EAVAEQLEEAGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCW 99 (152)
T ss_dssp HHHHHHHHHTTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHT
T ss_pred HHHHHHHHHcCCEEEEEecccc-chhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccc
Confidence 3455566677888888877665 211 123455555667889999999974 6778888775
Q ss_pred -HcCCCCceEEEE
Q 022176 123 -EAGTPNVRIGVV 134 (301)
Q Consensus 123 -~~~~~~~~i~av 134 (301)
...+.+.+++.+
T Consensus 100 ~~~~~~~K~~~~i 112 (152)
T PF03358_consen 100 FRRALRGKPVAII 112 (152)
T ss_dssp HTTTTTTSEEEEE
T ss_pred cccccCCCEEEEE
Confidence 333445555554
No 145
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=81.78 E-value=8.1 Score=32.90 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCeeEEEeeeeeeeC-----CC-Cc--HHHHHHcCCCCEEEEECh-------HHHHHHHHhhhc
Q 022176 192 EIEEGLSNRGFEVVRLNTYTTEPV-----HH-VD--QTVLKQALSIPVVAVASP-------SAVRSWVNLISD 249 (301)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~-----~~-~~--~~~~~~~~~~d~I~ftS~-------sav~~~~~~l~~ 249 (301)
.+.+.|.+.|++++.+.+|+-... .. .+ ..+.+.+...|.|+|.|| ..+++|++++..
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~~ 94 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLLDLLPE 94 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHHhCCh
Confidence 566677778999988888853210 00 11 123344578999999998 688999988754
No 146
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=81.36 E-value=1.2 Score=36.29 Aligned_cols=111 Identities=17% Similarity=0.114 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeee-----CCC--CcHHHHHHcCCCCEEEEEChHHHHHHHHhhhc
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP-----VHH--VDQTVLKQALSIPVVAVASPSAVRSWVNLISD 249 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~-----~~~--~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~ 249 (301)
.+++|.++..-.. +.+.|++.+.+ +.+++..+ ... ......+.+...|++++|.+.-+..=++.+-.
T Consensus 10 ~~~~V~~VG~f~P---~~~~l~~~~~~---v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~ 83 (147)
T PF04016_consen 10 PGDKVGMVGYFQP---LVEKLKERGAE---VRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTLVNGTIDDILE 83 (147)
T ss_dssp TTSEEEEES--HC---CHHHHCCCCSE---EEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHCCTTTHHHHHH
T ss_pred CCCEEEEEcCcHH---HHHHHhcCCCC---EEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeeeecCCHHHHHH
Confidence 5789999886322 66778766664 56667665 221 11222333678999999999865443333222
Q ss_pred ccCCCceEEEECHHHHHHH---HHcCCCeeEecCCCCHHHHHHHHHH
Q 022176 250 TEQWSNSVACIGETTASAA---KRLGLKNVYYPTHPGLEGWVDSILE 293 (301)
Q Consensus 250 ~~~~~~~i~aIG~~Ta~al---~~~G~~~~~v~~~ps~e~ll~ai~~ 293 (301)
.......++-+||++.-.- .++|+..+--..--+.+.+++.|.+
T Consensus 84 ~~~~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 84 LARNAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISE 130 (147)
T ss_dssp HTTTSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCT
T ss_pred hCccCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHc
Confidence 1112467788999886554 4567765432223467888887754
No 147
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=81.34 E-value=14 Score=32.68 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~ 137 (301)
..+.+.+++.|+++..+..- .+......+...+ ..+.|.||+.+.. .....++.+.+ .++++++++..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~--~~~~~~~~i~~~~--~~~~dgiii~~~~~~~~~~~~~~~~~---~~iPvV~~~~~ 88 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVP--DGEKVLSAIDNLG--AQGAKGFVICVPDVKLGPAIVAKAKA---YNMKVVAVDDR 88 (289)
T ss_pred HHHHHHHHHcCCEEEEccCC--CHHHHHHHHHHHH--HcCCCEEEEccCchhhhHHHHHHHHh---CCCeEEEecCC
Confidence 34567788899888754322 1100111222222 2568999998754 23444444443 47889998754
No 148
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=81.12 E-value=5.4 Score=32.04 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=40.1
Q ss_pred hHHHHHHHhCCCeeEEEeeeeee-e-----------CCCCcHHHHHHcCCCCEEEEECh-------HHHHHHHHhhh
Q 022176 191 NEIEEGLSNRGFEVVRLNTYTTE-P-----------VHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (301)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~-~-----------~~~~~~~~~~~~~~~d~I~ftS~-------sav~~~~~~l~ 248 (301)
+.+.+.|++.|+++..+.+.+.. + .++..+++.+.+...|.|+|.|| ..+++|++.+.
T Consensus 21 ~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~ 97 (152)
T PF03358_consen 21 EAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLS 97 (152)
T ss_dssp HHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHH
T ss_pred HHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhc
Confidence 45677787888888888777641 0 11111234444678999999996 68999999986
No 149
>PRK06703 flavodoxin; Provisional
Probab=80.80 E-value=21 Score=28.71 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEECh--------HHHHHHHHhhhcccCCCceEEEECH-
Q 022176 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP--------SAVRSWVNLISDTEQWSNSVACIGE- 262 (301)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~--------sav~~~~~~l~~~~~~~~~i~aIG~- 262 (301)
.+.+.|.+.|..|....+-+ .+ .. .+..+|.|+|-|| ..+..|++.+......+.+++++|-
T Consensus 21 ~ia~~l~~~g~~v~~~~~~~---~~--~~----~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g 91 (151)
T PRK06703 21 LIKVSLDAFDHEVVLQEMDG---MD--AE----ELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSG 91 (151)
T ss_pred HHHHHHHhcCCceEEEehhh---CC--HH----HHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccC
Confidence 44556667776654433311 11 11 2457888888663 4677788777643334556666652
Q ss_pred ------------HHHHHHHHcCCCe
Q 022176 263 ------------TTASAAKRLGLKN 275 (301)
Q Consensus 263 ------------~Ta~al~~~G~~~ 275 (301)
...+.|++.|++.
T Consensus 92 ~~~y~~~~~a~~~l~~~l~~~G~~~ 116 (151)
T PRK06703 92 DTAYPLFCEAVTIFEERLVERGAEL 116 (151)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCEE
Confidence 1566778888864
No 150
>PRK08339 short chain dehydrogenase; Provisional
Probab=80.35 E-value=39 Score=29.77 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=44.9
Q ss_pred CCCCCeEEEeCCC-CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE----EeChHHHHHHHHHH
Q 022176 47 SNSNPKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEAW 121 (301)
Q Consensus 47 ~l~g~~IlitR~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii----ftS~~av~~f~~~l 121 (301)
++.|+++|||-.. .=+..+++.|.++|++|..+- + .....+.+.+.+....+.+..+ +++..+++.+++.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~--r--~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLS--R--NEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe--C--CHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4779999999765 456789999999999876431 1 1011122222232211222221 48888998888877
Q ss_pred HHcC
Q 022176 122 KEAG 125 (301)
Q Consensus 122 ~~~~ 125 (301)
.+.+
T Consensus 81 ~~~g 84 (263)
T PRK08339 81 KNIG 84 (263)
T ss_pred HhhC
Confidence 5433
No 151
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=80.26 E-value=43 Score=29.85 Aligned_cols=181 Identities=10% Similarity=-0.034 Sum_probs=89.9
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|+++...+. ..+.+.-.+.++. -..+|+||+.+...-.-....... ...+++.+|....
T Consensus 55 ~gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~~~~~---~~~pvv~~~~~~~- 125 (309)
T PRK11041 55 RGIEVTAAEHGYLVLIGDC-----AHQNQQEKTFVNLIITKQIDGMLLLGSRLPFDASKEEQR---NLPPMVMANEFAP- 125 (309)
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHh---cCCCEEEEccccC-
Confidence 3456667778988765321 1121111122211 257999999764311111111111 1236777776421
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++..+.......++..++.|.+. ..++|+++.+... ..-+.+.+++.|..+.....+...
T Consensus 126 ---~~------~~~~V~~Dn~~~g~~a~~~l~~~--G~~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~ 194 (309)
T PRK11041 126 ---EL------ELPTVHIDNLTAAFEAVNYLHEL--GHKRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGD 194 (309)
T ss_pred ---CC------CCCEEEECcHHHHHHHHHHHHHc--CCceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCC
Confidence 12 33222222222344555666654 2468888876533 233566777788654321111111
Q ss_pred eCCCCcHHHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
............ + ..+++|+.++...+..++..+.+.+. .++.+++++..
T Consensus 195 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~gv~~al~~~g~~ip~di~vvg~D~~ 251 (309)
T PRK11041 195 FTFEAGAKALKQLLDLPQPPTAVFCHSDVMALGALSQAKRMGLRVPQDLSIIGFDDI 251 (309)
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEEeCCc
Confidence 001111112222 2 24889999988888777777776542 25677777764
No 152
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=80.15 E-value=36 Score=28.99 Aligned_cols=91 Identities=22% Similarity=0.297 Sum_probs=56.9
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh-----HHHHHHHH
Q 022176 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (301)
Q Consensus 50 g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~-----~av~~f~~ 119 (301)
+.+|++.-+.++ ..-.+..|+..|++|+++.. ..+ .+.+.+.+ .-.++|.|.+++. ..++.+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~----~~p-~~~l~~~~-~~~~~d~v~lS~~~~~~~~~~~~~i~ 155 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGR----DVP-PEEFVEAV-KEHKPDILGLSALMTTTMGGMKEVIE 155 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCC----CCC-HHHHHHHH-HHcCCCEEEEeccccccHHHHHHHHH
Confidence 456777655432 23456788999999987761 112 23455555 3357888776652 33445566
Q ss_pred HHHHcCC-CCceEEEEchhhHHHHHHHh
Q 022176 120 AWKEAGT-PNVRIGVVGAGTASIFEEVI 146 (301)
Q Consensus 120 ~l~~~~~-~~~~i~avG~~Ta~~L~~~~ 146 (301)
.+++.+. ++++|++-|......+.+.+
T Consensus 156 ~lr~~~~~~~~~i~vGG~~~~~~~~~~~ 183 (201)
T cd02070 156 ALKEAGLRDKVKVMVGGAPVNQEFADEI 183 (201)
T ss_pred HHHHCCCCcCCeEEEECCcCCHHHHHHc
Confidence 6666653 47999999977666665553
No 153
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=79.80 E-value=28 Score=31.74 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=56.0
Q ss_pred EEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEE
Q 022176 180 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVAC 259 (301)
Q Consensus 180 ~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~a 259 (301)
+++++.|.+..+.+.+.+.+.+-+| ..+... .++.+.+...|+++..|. ...+++.+.. ++++++
T Consensus 213 ~~~~i~G~g~~~~l~~~~~~~~~~v---~~~g~~------~~~~~~l~~ad~~v~~sg--~~t~~Eam~~----G~Pvv~ 277 (350)
T cd03785 213 QVIHQTGKGDLEEVKKAYEELGVNY---EVFPFI------DDMAAAYAAADLVISRAG--ASTVAELAAL----GLPAIL 277 (350)
T ss_pred EEEEEcCCccHHHHHHHHhccCCCe---EEeehh------hhHHHHHHhcCEEEECCC--HhHHHHHHHh----CCCEEE
Confidence 4455556555555555555432122 222111 122223457888886654 2334454432 567776
Q ss_pred EC---------HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 260 IG---------ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 260 IG---------~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
+. ...++.+.+.|.-..+.+.+.+.++|.++|.+.+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 278 IPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSD 324 (350)
T ss_pred eecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcC
Confidence 52 234677887776543333345899999999887753
No 154
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=79.77 E-value=48 Score=30.14 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=110.3
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEec----e--eEeeeCC-CchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELP----L--IQHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P----~--~~~~~~~-d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~ 123 (301)
..|-..-+--.|..-.+.|+++|..++.-. - .-+.... -..+..+.+.+ .+...|=-|-|.--+. .+...+
T Consensus 29 ~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~~~~~~~g~~ViirAHGv~~~~~~~l~~-~g~~viDaTCP~V~k~-~~~v~~ 106 (281)
T PF02401_consen 29 GPVYTLGPIIHNPQVVERLEKRGVKVVDDIDEVPEGDTVIIRAHGVPPEVYEELKE-RGLEVIDATCPFVKKI-HKIVRK 106 (281)
T ss_dssp S-EEECS-SSS-HHHHHHHHHCTEEEESSGCGS-TTEEEEE-TT---HHHHHHHHH-TTEEEEE---HHHHHH-HHHHHH
T ss_pred CCEEEecCcccCHHHHHHHHHCCCEEecCccccCCCCEEEEeCCCCCHHHHHHHHH-cCCEEEECCChhHHHH-HHHHHH
Confidence 367777777789999999999997765321 0 0000000 01112222211 2233333333332221 122222
Q ss_pred cCCCCceEEEEchhhHHHHHHHhhcccCCCce----eecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh----hHHHH
Q 022176 124 AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV----AFSPSKATGKILASELPKNGKKKCTVLYPASAKAS----NEIEE 195 (301)
Q Consensus 124 ~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~----~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~----~~L~~ 195 (301)
...++-.++.+|.......+..+ |+-. .++ .+.+++ +.++.. .++++.++.----+ ..+.+
T Consensus 107 ~~~~Gy~iviiG~~~HpEv~gi~-----g~~~~~~~~vv---~~~~~~-~~l~~~--~~~kv~vvsQTT~~~~~~~~i~~ 175 (281)
T PF02401_consen 107 YAKEGYQIVIIGDKNHPEVIGIL-----GYAPEEKAIVV---ESPEDV-EKLPIS--DPKKVAVVSQTTQSVEKFEEIVE 175 (281)
T ss_dssp HHHCT-EEEEES-TT-HHHHHHH-----CCHHTS-EEEE---SSHHHH-HHGGGS--STTCEEEEE-TTS-HHHHHHHHH
T ss_pred HHhcCCEEEEECCCCCceEEEec-----ccccCCceEEe---CChhhh-cccCCC--CCCeEEEEEeecccHHHHHHHHH
Confidence 22247899999999988888875 5433 222 234444 455432 24577766554332 35777
Q ss_pred HHHhCCCeeEEEeeeeeeeCCCCcH--HHHHHcCCCCEEEEE---ChHHHHHHHHhhhcccCCCceEEEECH---HHHHH
Q 022176 196 GLSNRGFEVVRLNTYTTEPVHHVDQ--TVLKQALSIPVVAVA---SPSAVRSWVNLISDTEQWSNSVACIGE---TTASA 267 (301)
Q Consensus 196 ~L~~~G~~v~~~~vY~~~~~~~~~~--~~~~~~~~~d~I~ft---S~sav~~~~~~l~~~~~~~~~i~aIG~---~Ta~a 267 (301)
.|+++.-++ +..+|.+.+...... .+.+..+..|++++- .++.-+.+++..++.+ .+.+-|.. -..+.
T Consensus 176 ~l~~~~~~~-~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~---~~t~~Ie~~~el~~~~ 251 (281)
T PF02401_consen 176 ALKKRFPEL-EGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHG---KPTYHIETADELDPEW 251 (281)
T ss_dssp HHHHHSTCE-E-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCT---TCEEEESSGGG--HHH
T ss_pred HHHHhCccc-cCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhC---CCEEEeCCccccCHhH
Confidence 787765443 334777766443221 122224789988774 2344556666666542 23444432 22222
Q ss_pred HHHcCCC-eeEecCCCCHHHHHHHHHHHHHc
Q 022176 268 AKRLGLK-NVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 268 l~~~G~~-~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
+. |.+ +-+.+...+++.+++.+.+++++
T Consensus 252 l~--~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 252 LK--GVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp HT--T-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred hC--CCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 33 343 34668888999999999988864
No 155
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=78.91 E-value=44 Score=31.52 Aligned_cols=228 Identities=14% Similarity=0.114 Sum_probs=121.6
Q ss_pred CCCCCeEEEe--C-CC-CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHH
Q 022176 47 SNSNPKVVVT--R-ER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (301)
Q Consensus 47 ~l~g~~Ilit--R-~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~ 122 (301)
....++|-+. . .. .+..++.+.|++.|+++..++.-.. ..++ +.++...+.-+..++.+...+.+.++
T Consensus 141 ~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~----t~~e----~~~~~~A~lniv~~~~~~~~~a~~L~ 212 (398)
T PF00148_consen 141 EKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGT----TLEE----IRKAPEAALNIVLCPEGGPYAAEWLE 212 (398)
T ss_dssp TTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTB----CHHH----HHHGGGSSEEEESSCCHHHHHHHHHH
T ss_pred cCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCC----CHHH----HHhCCcCcEEEEeccchhhHHHHHHH
Confidence 3334455553 2 23 4667999999999997765442221 2233 33567788888899987776677776
Q ss_pred HcCCCCceEEE----Ech-hhHHHHHHHhhcccCCCceeecCCC--CcHHHHHHHhccC--CCCCCEEEEEcCCcChhHH
Q 022176 123 EAGTPNVRIGV----VGA-GTASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEI 193 (301)
Q Consensus 123 ~~~~~~~~i~a----vG~-~Ta~~L~~~~~~~~~G~~~~~~p~~--~~~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L 193 (301)
+.. +++++. +|. .|.+.+++.. . ..|... .++. ..-+...+.+.+. ...++++++..+....-.|
T Consensus 213 e~~--giP~~~~~~p~G~~~t~~~l~~i~-~-~lg~~~--~~~~i~~~~~~~~~~l~~~~~~l~g~~v~i~~~~~~~~~l 286 (398)
T PF00148_consen 213 ERF--GIPYLYFPSPYGIEGTDAWLRAIA-E-ALGKPI--AEAEIAEERERAEDALADYRERLGGKRVAIYGDPDRALGL 286 (398)
T ss_dssp HHH--T-EEEEEC-SBSHHHHHHHHHHHH-H-HHTHHH--HHHHHHHHHHHHHHHHHHHHHHHTT-EEEEESSHHHHHHH
T ss_pred HHh--CCCeeeccccccHHHHHHHHHHHH-H-HhCCch--hhHHHHHHHHHHHHHHHhhHHhhcCceEEEEcCchhHHHH
Confidence 531 334433 443 3455555541 0 003111 0110 0011122222221 1157899988887667789
Q ss_pred HHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCC-CEEEEE-ChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHc
Q 022176 194 EEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSI-PVVAVA-SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRL 271 (301)
Q Consensus 194 ~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~-d~I~ft-S~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~ 271 (301)
.+.|.+.|.++..+.++....... +++...+... +.|+++ +...++..++..+ ..++.-+......+++.
T Consensus 287 ~~~L~elG~~v~~v~~~~~~~~~~--e~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------pdl~ig~~~~~~~a~~~ 358 (398)
T PF00148_consen 287 ARFLEELGMEVVAVGCDDKSPEDE--ERLRWLLEESDPEVIIDPDPEEIEELLEELK------PDLLIGSSHERYLAKKL 358 (398)
T ss_dssp HHHHHHTT-EEEEEEESSGGHHHH--HHHHHHHHTTCSEEEESCBHHHHHHHHHHHT-------SEEEESHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEEEEccCchhHH--HHHHHHhhCCCcEEEeCCCHHHHHHHHHhcC------CCEEEechhhHHHHHHh
Confidence 999999999998887776532221 2222223232 355555 6666666655443 33555566656666777
Q ss_pred -------CCCeeEec-----CCCCHHHHHHHHHHHHH
Q 022176 272 -------GLKNVYYP-----THPGLEGWVDSILEALR 296 (301)
Q Consensus 272 -------G~~~~~v~-----~~ps~e~ll~ai~~~~~ 296 (301)
|+...... .....++.+..+++..+
T Consensus 359 ~~~~~~~~~P~~~~~~~~~~~~~Gy~G~~~l~e~i~~ 395 (398)
T PF00148_consen 359 GIPLIRIGFPVFDRISLTYRPYMGYEGALNLLEEIAN 395 (398)
T ss_dssp T--EEE-SSSEEESSSGGGS-SSHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCeeeeecCCCCCcEeHHHHHHHHHHHHH
Confidence 55532211 23445677766665544
No 156
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=78.66 E-value=59 Score=30.55 Aligned_cols=216 Identities=17% Similarity=0.118 Sum_probs=110.5
Q ss_pred chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEch-hh
Q 022176 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA-GT 138 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-~~~~~~i~avG~-~T 138 (301)
+..++.+.|++.|+++..++.... ..++ +.++...+..+..++..-..+.+.+++. +.+-+...-+|. .|
T Consensus 167 d~~el~~ll~~~G~~v~~~~~~~~----s~~~----i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G~~~t 238 (399)
T cd00316 167 DLRELKRLLEEMGIRVNALFDGGT----TVEE----LRELGNAKLNLVLCRESGLYLARYLEEKYGIPYILINPIGLEAT 238 (399)
T ss_pred hHHHHHHHHHHcCCcEEEEcCCCC----CHHH----HHhhccCcEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcCHHHH
Confidence 568999999999999998776621 1222 3456778888888885555567777654 333222224553 45
Q ss_pred HHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhcc--CCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPK--NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~--~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
.+.+++.. ...|... -+++... -+.+...+.+ ....++++++..+....-.+...|.+.|.++..+..+...+
T Consensus 239 ~~~l~~i~--~~~g~~~-~~~~~i~~~~~~~~~~~~~~~~~l~g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~ 315 (399)
T cd00316 239 DAFLRKLA--ELFGIEK-EVPEVIARERARLLDALADYHEYLGGKKVAIFGDGDLLLALARFLLELGMEVVAAGTTFGHK 315 (399)
T ss_pred HHHHHHHH--HHhCCCc-chHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCCH
Confidence 55555541 1114210 0111000 0112222221 11257888887766555668899999999887766543322
Q ss_pred CCCCcHHHHHHcCC--CCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEec------CCCCHHH
Q 022176 215 VHHVDQTVLKQALS--IPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYP------THPGLEG 286 (301)
Q Consensus 215 ~~~~~~~~~~~~~~--~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~------~~ps~e~ 286 (301)
.. .+.. ..+.. ...+.-.....+...+... +..++.-+......+++.|+..+.+. .....++
T Consensus 316 ~~--~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~------~pdl~ig~~~~~~~~~~~~ip~~~~~~p~~~~~~~Gy~G 386 (399)
T cd00316 316 AD--YERR-EELLGEGTEVVDDGDLEELEELIREL------KPDLIIGGSKGRYIAKKLGIPLVRIGFPIHRRPYVGYEG 386 (399)
T ss_pred HH--HHHH-HHhcCCCCEEEeCCCHHHHHHHHhhc------CCCEEEECCcHHHHHHHhCCCEEEcCCccccCCccchhh
Confidence 11 1111 11222 2232223434433332221 22344334445555666776643221 1135566
Q ss_pred HHHHHHHHHH
Q 022176 287 WVDSILEALR 296 (301)
Q Consensus 287 ll~ai~~~~~ 296 (301)
....+.+..+
T Consensus 387 ~~~l~~~i~~ 396 (399)
T cd00316 387 ALNLAEEIAN 396 (399)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 157
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=78.66 E-value=52 Score=29.90 Aligned_cols=137 Identities=12% Similarity=0.015 Sum_probs=74.6
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecC-CCCcHHHHHHHhccCCCCCC
Q 022176 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSP-SKATGKILASELPKNGKKKC 179 (301)
Q Consensus 101 ~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p-~~~~~e~L~~~l~~~~~~~~ 179 (301)
++.+.|+-..........+.+.+ .+++++..+... ..+... .++- .+.+ .......+++.+.+.. .+
T Consensus 66 ~~V~~iig~~~s~~~~~~~~~~~---~~ip~v~~~~~~-~~~~~~-----~~~~-~~~~~~~~~~~~~~~~l~~~g--~~ 133 (341)
T cd06341 66 DKVVAVVGGSSGAGGSALPYLAG---AGIPVIGGAGTS-AWELTS-----PNSF-PFSGGTPASLTTWGDFAKDQG--GT 133 (341)
T ss_pred cCceEEEecccccchhHHHHHhh---cCCceecCCCCC-chhhcC-----CCeE-EecCCCcchhHHHHHHHHHcC--Cc
Confidence 46788876554443333344443 355665554432 222211 0111 1122 2234566777776543 45
Q ss_pred EEEEEcCCcC------hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-HHHHHHHhhhcc
Q 022176 180 TVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-AVRSWVNLISDT 250 (301)
Q Consensus 180 ~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~s-av~~~~~~l~~~ 250 (301)
++.++..+.. ...+.+.++++|.++.....|... ..+....+..+ .++|+|++.+.. .+-.|++.+.+.
T Consensus 134 ~~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~~~~i~~~~pdaV~~~~~~~~a~~~~~~~~~~ 211 (341)
T cd06341 134 RAVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITAT--APDPTPQAQQAAAAGADAIITVLDAAVCASVLKAVRAA 211 (341)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCCC--CCCHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHc
Confidence 6665533322 345788889999988766666542 12222223332 479999998877 777888888776
Q ss_pred c
Q 022176 251 E 251 (301)
Q Consensus 251 ~ 251 (301)
+
T Consensus 212 G 212 (341)
T cd06341 212 G 212 (341)
T ss_pred C
Confidence 5
No 158
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=78.63 E-value=50 Score=29.69 Aligned_cols=201 Identities=10% Similarity=0.054 Sum_probs=103.6
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHh--cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~--~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|+++..++.. .+.+...+.+. .-...|++|+.+..... .+.+... +.+++.+|...
T Consensus 79 ~~i~~~~~~~gy~~~i~~~~-----~~~~~~~~~~~~l~~~~vdGvIi~~~~~~~--~~~l~~~---~~p~V~i~~~~-- 146 (311)
T TIGR02405 79 SGMLPVFYTAGYDPIIMESQ-----FSPQLTNEHLSVLQKRNVDGVILFGFTGCD--EEILESW---NHKAVVIARDT-- 146 (311)
T ss_pred HHHHHHHHHCCCeEEEecCC-----CChHHHHHHHHHHHhcCCCEEEEeCCCCCC--HHHHHhc---CCCEEEEecCC--
Confidence 34566778889998765421 12111122222 12568999987532111 0122222 45788888531
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCc-C-------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~-~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
. ++..+.......+..+++.|.+.. .++|.|+.+.. . ..-+.+.++++|.... ..+..
T Consensus 147 ----~------~~~~V~~D~~~~~~~a~~~L~~~G--hr~I~~i~~~~~~~~~~~~R~~gf~~a~~~~gi~~~--~~~~~ 212 (311)
T TIGR02405 147 ----G------GFSSVCYDDYGAIELLMANLYQQG--HRHISFLGVDPSDKTTGLMRHNAYLAYCESANLEPI--YQTGQ 212 (311)
T ss_pred ----C------CccEEEeCcHHHHHHHHHHHHHcC--CCcEEEEccCcccchhHHHHHHHHHHHHHHcCCCce--eeeCC
Confidence 1 222212222233455667776653 46899987532 1 1346788888887631 11111
Q ss_pred eeCCCCcHHHHHH-c-CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHH
Q 022176 213 EPVHHVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDS 290 (301)
Q Consensus 213 ~~~~~~~~~~~~~-~-~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~a 290 (301)
.......+..+. + .++++|+..+-..+-.++..+.+.+..++.+++++..-.... ..+.+..-..+.+.|.+.
T Consensus 213 -~~~~~~~~~~~~~l~~~~tAi~~~~D~~A~g~~~~l~~~g~~dvsvvgfd~~~~~~~----~~p~lttv~~~~~~~g~~ 287 (311)
T TIGR02405 213 -LSHESGYVLTDKVLKPETTALVCATDTLALGAAKYLQELDRSDVQVSSVGNTPLLSF----LFPNTVSIDPGYYEAGKA 287 (311)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHHHHHHcCCCCeEEEeeCCchhhcc----cCCCCceEecCHHHHHHH
Confidence 000111112222 2 358999999998888888888776555777887776422211 122222233456666554
Q ss_pred HHHH
Q 022176 291 ILEA 294 (301)
Q Consensus 291 i~~~ 294 (301)
..+.
T Consensus 288 A~~~ 291 (311)
T TIGR02405 288 AASQ 291 (311)
T ss_pred HHHH
Confidence 4443
No 159
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=78.58 E-value=11 Score=32.16 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=39.6
Q ss_pred CCCCchHHH----HHHHHhCCCcEEEeceeEeeeC------CCchHHHHHHhcCCCccEEEEeCh-------HHHHHHHH
Q 022176 57 RERGKNGKL----IKALAKHRIDCLELPLIQHAQG------PDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLE 119 (301)
Q Consensus 57 R~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~------~d~~~l~~~l~~l~~~d~IiftS~-------~av~~f~~ 119 (301)
|+...+..+ .+.+++.|+++..+.+.+..+. ...+.+....+.+...|.|||-|| -..+.|++
T Consensus 11 r~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD 90 (191)
T PRK10569 11 RFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLLD 90 (191)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHH
Confidence 444444444 4455568999988776653321 012345555566788999999998 34455665
Q ss_pred HH
Q 022176 120 AW 121 (301)
Q Consensus 120 ~l 121 (301)
.+
T Consensus 91 ~l 92 (191)
T PRK10569 91 LL 92 (191)
T ss_pred hC
Confidence 44
No 160
>PRK10537 voltage-gated potassium channel; Provisional
Probab=78.42 E-value=22 Score=34.00 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=74.4
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeE----------eeeC--CCchHHHHHHhcCCCccEEEEeChHHHHH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ----------HAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~----------~~~~--~d~~~l~~~l~~l~~~d~IiftS~~av~~ 116 (301)
.+.+|+|+--..-+..+.+.|++.|.+++.+---+ +... .|.+.|+++ .+++.+.|+.++.+..+.
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~A--gI~~A~aVI~~t~dD~~N 316 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKA--GAARARAILALRDNDADN 316 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhc--CcccCCEEEEcCCChHHH
Confidence 35689999888888889999999998775432100 1111 122222221 467899999988877665
Q ss_pred HHHHH--HHcCCCCceEEE--EchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 117 FLEAW--KEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 117 f~~~l--~~~~~~~~~i~a--vG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
..-.+ ++.+ ++.++++ -.+...+.+++. |.+..+.|..-.++.+++.+..
T Consensus 317 l~ivL~ar~l~-p~~kIIa~v~~~~~~~~L~~~------GaD~VIsp~~l~g~~la~~l~g 370 (393)
T PRK10537 317 AFVVLAAKEMS-SDVKTVAAVNDSKNLEKIKRV------HPDMIFSPQLLGSELLARTLNG 370 (393)
T ss_pred HHHHHHHHHhC-CCCcEEEEECCHHHHHHHHhc------CCCEEECHHHHHHHHHHHHhcC
Confidence 54322 3333 3556654 466677778888 9988788876667777766643
No 161
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=77.44 E-value=52 Score=29.31 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=33.1
Q ss_pred CCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEEC--HHHHHHHHHcCCCeeEecCCC
Q 022176 227 LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIG--ETTASAAKRLGLKNVYYPTHP 282 (301)
Q Consensus 227 ~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG--~~Ta~al~~~G~~~~~v~~~p 282 (301)
.++++|+..+...+...++.+++.+. .++.++.++ +.+.+++++ |.-...+...|
T Consensus 184 ~~~~ai~~~~d~~a~ga~~al~~~g~~~~i~vvg~d~~~~~~~~l~~-g~i~~~~~q~p 241 (302)
T TIGR02637 184 PNLKGIIAPTTVGIKAAAQAVSDAKLIGKVKLTGLGLPSEMAKYVKN-GTVKAFALWNP 241 (302)
T ss_pred CCccEEEeCCCchHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHhc-CccceEEEeCH
Confidence 36788888776766666666655432 256677776 455677765 65333334444
No 162
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=77.37 E-value=25 Score=26.20 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=43.4
Q ss_pred EEEEEcCCcCh-----hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCC
Q 022176 180 TVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 254 (301)
Q Consensus 180 ~vLi~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~ 254 (301)
+||++||.+.. +.+.+.++++|.++ ++..+.. .++.....++| +++++|.....+-+.-+.....+
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~-~v~~~~~-------~~~~~~~~~~D-iil~~Pqv~~~~~~i~~~~~~~~ 71 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDA-EIEAVPE-------SELEEYIDDAD-VVLLGPQVRYMLDEVKKKAAEYG 71 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCce-EEEEecH-------HHHHHhcCCCC-EEEEChhHHHHHHHHHHHhccCC
Confidence 47778877753 35666777888763 2222111 11222245788 67778877666655443222347
Q ss_pred ceEEEECHH
Q 022176 255 NSVACIGET 263 (301)
Q Consensus 255 ~~i~aIG~~ 263 (301)
+++..|.+.
T Consensus 72 ~pv~~I~~~ 80 (96)
T cd05564 72 IPVAVIDMM 80 (96)
T ss_pred CcEEEcChH
Confidence 889999884
No 163
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=77.19 E-value=30 Score=32.86 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=89.3
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCce
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~ 130 (301)
|+|++....+ ...+.+++.| ++..+|-- +.. . ..+.++|.++..|..-+.. +.+.. +++|
T Consensus 1 mkI~~d~~~p---~~~~~~~~~~-~v~~~~~~------~~~--~---~~l~daD~liv~~~t~v~~--~ll~~---~~Lk 60 (381)
T PRK00257 1 MKIVADENIP---LLDAFFAGFG-EIRRLPGR------AFD--R---AAVRDADVLLVRSVTRVDR--ALLEG---SRVR 60 (381)
T ss_pred CEEEEecCch---hHHHHHhhCC-cEEEcCCc------ccC--H---HHhCCceEEEEeCCCCCCH--HHhcC---CCCe
Confidence 5788877653 2344555544 55554421 100 1 1357899988776533332 11221 3555
Q ss_pred EEE---Echh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------hccC---CCCCCEEEEEcCCcChhHHHH
Q 022176 131 IGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPKN---GKKKCTVLYPASAKASNEIEE 195 (301)
Q Consensus 131 i~a---vG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l~~~---~~~~~~vLi~rg~~~~~~L~~ 195 (301)
+++ +|-. -.+++++. |+.+.-.|. .++..+++. +.+. ...+++|.++.-......+.+
T Consensus 61 ~I~~~~~G~D~iD~~~~~~~------gI~v~napg-~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~ 133 (381)
T PRK00257 61 FVGTCTIGTDHLDLDYFAEA------GITWSSAPG-CNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVR 133 (381)
T ss_pred EEEECCccccccCHHHHHHC------CCEEEECCC-cChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHH
Confidence 543 4432 23567777 988766653 344444332 1121 136789999988887888999
Q ss_pred HHHhCCCeeEEEeeeeeeeCCC-CcHHHHHHcCCCCEEEEEChHHH
Q 022176 196 GLSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVASPSAV 240 (301)
Q Consensus 196 ~L~~~G~~v~~~~vY~~~~~~~-~~~~~~~~~~~~d~I~ftS~sav 240 (301)
.|+..|.+|..+..++...... ....+-+.+.+.|+|++.-|.+-
T Consensus 134 ~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~ 179 (381)
T PRK00257 134 VLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTK 179 (381)
T ss_pred HHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCC
Confidence 9999999875443322111000 00011222467899999888643
No 164
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=76.54 E-value=74 Score=30.56 Aligned_cols=224 Identities=13% Similarity=0.111 Sum_probs=114.0
Q ss_pred CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceE-EEEch-
Q 022176 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRI-GVVGA- 136 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~-~~~~~~~i-~avG~- 136 (301)
.+-.++...|++.|+++..++.. ....++ +.+..+...-+..++.......+.+++ .+.+-+.+ +-+|.
T Consensus 179 ~d~~ei~~lL~~~Gi~v~~~~~~----~~~~~e----i~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~~ 250 (426)
T cd01972 179 EDVDEFKRLLNELGLRVNAIIAG----GCSVEE----LERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGIE 250 (426)
T ss_pred ccHHHHHHHHHHcCCeEEEEeCC----CCCHHH----HHhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEecCCccCHH
Confidence 34588999999999999855332 112232 345677777777787655566666654 34433322 22554
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCC--cHHHHHHHhcc--CCCCCCEEEEEcCCcChhHHHHHHHhCC-CeeEEEeeee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPK--NGKKKCTVLYPASAKASNEIEEGLSNRG-FEVVRLNTYT 211 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~--~~e~L~~~l~~--~~~~~~~vLi~rg~~~~~~L~~~L~~~G-~~v~~~~vY~ 211 (301)
.|.+.|++.. ...|.... ++... .-+.+...+.+ ....|+++++..+....-.+...|.+.| .+|..+.+..
T Consensus 251 ~T~~~l~~ia--~~~g~~~~-~e~~i~~e~~~~~~~l~~~~~~l~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~ 327 (426)
T cd01972 251 ATDKWLREIA--KVLGMEAE-AEAVIEREHERVAPEIEELRKALKGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFH 327 (426)
T ss_pred HHHHHHHHHH--HHhCCcHH-HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEecc
Confidence 5666666551 11143211 11100 00112222221 1126889988888877888999999999 8876654432
Q ss_pred eeeCCCCcHHHHH-HcC-CC--CEE---EEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCC---
Q 022176 212 TEPVHHVDQTVLK-QAL-SI--PVV---AVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTH--- 281 (301)
Q Consensus 212 ~~~~~~~~~~~~~-~~~-~~--d~I---~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~--- 281 (301)
..+... .....+ .++ .. +.. +..+......+.+.+++.. .+..+..-|........+.|+..+-+...
T Consensus 328 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-pDl~i~~~~~~~~~~~~~~gip~~~~~~~~~~ 405 (426)
T cd01972 328 HDPTYD-RGDSEKDLLEHGVDPEIDITKYTVSNGQYYQFYNLLKRVK-PDFIIFRHGGLFPDATVYLGIPVVPLNDELNQ 405 (426)
T ss_pred Cchhhh-cchhHHHHhcCCcccccccceeeecCCCHHHHHHHHHHhC-CCEEEEcCCCccHHHHHhcCCCEEeccccccC
Confidence 222211 111111 122 22 111 2244423333334443321 13333323444545556688876444332
Q ss_pred --CCHHHHHHHHHHHHH
Q 022176 282 --PGLEGWVDSILEALR 296 (301)
Q Consensus 282 --ps~e~ll~ai~~~~~ 296 (301)
...+++++.+.+..+
T Consensus 406 ~~~Gy~G~~~l~~~i~~ 422 (426)
T cd01972 406 PQFGYRGLLKIANKIVD 422 (426)
T ss_pred CcccHhHHHHHHHHHHH
Confidence 366777777766554
No 165
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=76.17 E-value=50 Score=30.30 Aligned_cols=102 Identities=12% Similarity=0.101 Sum_probs=57.5
Q ss_pred EEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEE
Q 022176 180 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVAC 259 (301)
Q Consensus 180 ~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~a 259 (301)
.++++.|.+..+.+.+.+. .|.+ +..+... + .+.+.+...|+++..|. ...+++.+.. ++++++
T Consensus 214 ~~~~~~G~g~~~~~~~~~~-~~~~---v~~~g~~--~----~~~~~~~~~d~~i~~~g--~~~~~Ea~~~----g~Pvv~ 277 (357)
T PRK00726 214 QVIHQTGKGDLEEVRAAYA-AGIN---AEVVPFI--D----DMAAAYAAADLVICRAG--ASTVAELAAA----GLPAIL 277 (357)
T ss_pred EEEEEcCCCcHHHHHHHhh-cCCc---EEEeehH--h----hHHHHHHhCCEEEECCC--HHHHHHHHHh----CCCEEE
Confidence 4556666666666666665 5554 2222211 1 12222456788776664 2334444432 567777
Q ss_pred EC-------HH--HHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 260 IG-------ET--TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 260 IG-------~~--Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
+. .. .++.+.+.|.-..+-+...+.++|.++|.+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~ 324 (357)
T PRK00726 278 VPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD 324 (357)
T ss_pred ecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC
Confidence 52 11 3567878777554434455799999999987754
No 166
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=74.54 E-value=69 Score=30.41 Aligned_cols=216 Identities=13% Similarity=0.031 Sum_probs=109.2
Q ss_pred CchHHHHHHHHhCCCcEE-EeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCceE-EEEc-
Q 022176 60 GKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRI-GVVG- 135 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~-~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-~~~~~~i-~avG- 135 (301)
....++...|++.|+++. .+|- .+.++ +.+.+....++..++.+. ...+.+++. +.+.+.+ +-+|
T Consensus 167 ~d~~el~~lL~~~Gi~v~~~~~d------~~~~~----~~~~~~a~~~~~~~~~~~-~~A~~Le~r~giP~~~~~~P~G~ 235 (396)
T cd01979 167 IVEDQLRRELEQLGIPVVGFLPP------RRYTD----LPVIGPGTYVLGIQPFLS-RTATTLMRRRKCKLLSAPFPIGP 235 (396)
T ss_pred chHHHHHHHHHHcCCeEEEEeCC------CChHH----hhccCcceEEEEeChhHH-HHHHHHHHhcCCCcccCCcCcCh
Confidence 346889999999999996 3331 12222 234455555666666553 345666542 3332222 2255
Q ss_pred hhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeee
Q 022176 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
..|.+.|++.. ...|....... ...+.+.+.+.... ..|+|+.+..+....-.+...|.+.|.+|..+-. ...
T Consensus 236 ~~t~~~l~~la--~~~g~~~~~i~--~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~elGm~vv~~~t-~~~ 310 (396)
T cd01979 236 DGTRAWLEAIC--SAFGIFPSVLA--EREARAWRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTRCGMIVVEVGT-PYL 310 (396)
T ss_pred HHHHHHHHHHH--HHhCCChhHHH--HHHHHHHHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHHCCCEEEeeCC-CcC
Confidence 35666666652 11132111110 11122334443321 2688998887766667899999999998866532 111
Q ss_pred eCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCee-Ee----cCCCCHHHHH
Q 022176 214 PVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV-YY----PTHPGLEGWV 288 (301)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~-~v----~~~ps~e~ll 288 (301)
.....+...+.+. .+..+... .....+.+.+++. +..++.-|...+..+.+.|+... -+ .......+-.
T Consensus 311 -~~~~~~~~~~~l~-~~~~v~~~-~d~~~l~~~i~~~---~pDlli~~~~~a~pl~r~G~P~~dr~~~~~~~~~Gy~g~~ 384 (396)
T cd01979 311 -DKRFQAAELELLP-PMVRIVEK-PDNYRQLDRIREL---RPDLVVTGLGLANPLEARGITTKWSIEFTFAQIHGFTNAR 384 (396)
T ss_pred -ChHHHHHHHHhcC-CCCeEEEC-CCHHHHHHHHHhc---CCCEEEecccccCcHHhCCCcceeecceeeeccccHhhHH
Confidence 1111122222233 34444332 2333333444332 23344446667778889999641 11 2234555666
Q ss_pred HHHHHHHHc
Q 022176 289 DSILEALRE 297 (301)
Q Consensus 289 ~ai~~~~~~ 297 (301)
..+..+.|.
T Consensus 385 ~l~~~~~~~ 393 (396)
T cd01979 385 DLAELFTRP 393 (396)
T ss_pred HHHHHhhcc
Confidence 665555443
No 167
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=73.95 E-value=35 Score=29.71 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=79.7
Q ss_pred EEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeee
Q 022176 131 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 131 i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY 210 (301)
-.++|-+|..++.++ +++-. ..+.-+++..+++.. +-++|.++.. -......|++. +.+|
T Consensus 80 e~tlGvAaiNAvsq~------~~dl~----~~~~~Dil~li~~~d-~IkmI~~fg~---m~p~v~~l~ek------~~v~ 139 (250)
T COG2014 80 ERTLGVAAINAVSQY------YIDLE----EANWFDILDLIQRDD-KIKMIAEFGN---MPPVVRTLKEK------FEVY 139 (250)
T ss_pred HHhhhHHHHHHHHHH------hhhHH----hcchHHHHHHHcCCC-ceeEEEecCC---CChHHHHhhhh------eEEE
Confidence 357899999999988 65431 334555555555432 2345555544 33345556633 3444
Q ss_pred eeeeCCCCc------HHH-HHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHH---HHHHHcCCCeeEecC
Q 022176 211 TTEPVHHVD------QTV-LKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTA---SAAKRLGLKNVYYPT 280 (301)
Q Consensus 211 ~~~~~~~~~------~~~-~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta---~al~~~G~~~~~v~~ 280 (301)
.-......+ +.. .+.+...|+|+.+-+--+..-++.+-.......-++-+||++- +-+...|+.++.--+
T Consensus 140 ~~er~~~~pkr~t~~d~~e~~iLP~~Dvii~SaStlvN~T~d~~Ld~ak~ak~vvl~GPTa~l~pe~f~~~gvt~iag~k 219 (250)
T COG2014 140 VFERNPKLPKRGTLSDTLEYQILPEVDVIIASASTLVNGTLDMILDRAKKAKLVVLTGPTAQLLPEFFKGTGVTHIAGTK 219 (250)
T ss_pred EeccCccCcccccccchhhhhhcccccEEEEechhhhcCcHHHHHhhhccCcEEEEeCCCcccchhHHhccCcceEEeee
Confidence 432222111 111 2225788988888777666555544322122445666898764 446667776644344
Q ss_pred CCCHHHHHHHHHHH
Q 022176 281 HPGLEGWVDSILEA 294 (301)
Q Consensus 281 ~ps~e~ll~ai~~~ 294 (301)
--+++.++..++..
T Consensus 220 IiDp~~~L~klk~~ 233 (250)
T COG2014 220 IIDPDKALLKLKFA 233 (250)
T ss_pred ecCHHHHHHHhhhc
Confidence 46777777766543
No 168
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=73.90 E-value=30 Score=26.53 Aligned_cols=82 Identities=15% Similarity=0.292 Sum_probs=48.0
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEECh-----HHHHHHHHhhhcccCCCceEEEECH
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASP-----SAVRSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~-----sav~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
...+...|+..|++|..+-. ..+ .+++.+. -.++|+|.+++. ..+..+.+.+++....++.+++-|.
T Consensus 16 ~~~~~~~l~~~G~~V~~lg~--~~~----~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGV--DVP----PEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred HHHHHHHHHHCCCEEEECCC--CCC----HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 45678889999988744332 122 2233332 257888888875 2334444555443222567777776
Q ss_pred HHHH---HHHHcCCCeeE
Q 022176 263 TTAS---AAKRLGLKNVY 277 (301)
Q Consensus 263 ~Ta~---al~~~G~~~~~ 277 (301)
.... .+++.|+...+
T Consensus 90 ~~~~~~~~~~~~G~D~~~ 107 (119)
T cd02067 90 IVTRDFKFLKEIGVDAYF 107 (119)
T ss_pred CCChhHHHHHHcCCeEEE
Confidence 4443 67888986544
No 169
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=73.89 E-value=11 Score=29.60 Aligned_cols=63 Identities=10% Similarity=0.169 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH---------HHHHHHHHHHHcCCCCceEEE
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGV 133 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~---------av~~f~~~l~~~~~~~~~i~a 133 (301)
+.+++.+.+.|+++..+++-+..+ ..+..+|.|||-||. .+..|++.+....+.+.++++
T Consensus 17 ~~i~~~~~~~g~~v~~~~~~~~~~-----------~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~v 85 (140)
T TIGR01753 17 NIIAEGLKEAGAEVDLLEVADADA-----------EDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVAL 85 (140)
T ss_pred HHHHHHHHhcCCeEEEEEcccCCH-----------HHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEE
Confidence 444555666788776555432211 123568999998876 223566666554455667777
Q ss_pred Ech
Q 022176 134 VGA 136 (301)
Q Consensus 134 vG~ 136 (301)
+|-
T Consensus 86 fgt 88 (140)
T TIGR01753 86 FGS 88 (140)
T ss_pred Eec
Confidence 663
No 170
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=73.88 E-value=21 Score=27.17 Aligned_cols=70 Identities=20% Similarity=0.035 Sum_probs=44.4
Q ss_pred hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC--hHHHHHHHHHHH--HcCCCCceEEEEchh
Q 022176 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS--PEAGSVFLEAWK--EAGTPNVRIGVVGAG 137 (301)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS--~~av~~f~~~l~--~~~~~~~~i~avG~~ 137 (301)
-..++..|++.|+++..+.... +.+.+.+.+.+ .++|.|.|++ ........+..+ +...++.++++-|+.
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~-----~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANV-----PPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB------HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCeEEEECCCC-----CHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 4678889999999998763322 12456566634 4899999976 223333333222 223468899999987
No 171
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=73.36 E-value=13 Score=29.78 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=51.1
Q ss_pred chHHHHHHHHhCCCcEEEeceeE--eeeC-CCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEc
Q 022176 61 KNGKLIKALAKHRIDCLELPLIQ--HAQG-PDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG 135 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~--~~~~-~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG 135 (301)
....+...|++.|+++...|... .... .|..-....++. ...+|.+|+.|.-+ -|...+......+.++.++|
T Consensus 53 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~--Df~~~i~~lr~~G~~V~v~~ 130 (149)
T cd06167 53 RQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDS--DFVPLVERLRELGKRVIVVG 130 (149)
T ss_pred hHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCc--cHHHHHHHHHHcCCEEEEEc
Confidence 56789999999999999999875 2222 242211122211 23689999888866 34443333222356666666
Q ss_pred h--hhHHHHHHH
Q 022176 136 A--GTASIFEEV 145 (301)
Q Consensus 136 ~--~Ta~~L~~~ 145 (301)
. .+...|++.
T Consensus 131 ~~~~~s~~L~~~ 142 (149)
T cd06167 131 FEAKTSRELRKA 142 (149)
T ss_pred cCccChHHHHHh
Confidence 6 577777765
No 172
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=73.34 E-value=90 Score=30.06 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=75.5
Q ss_pred hHHHHHHHHhCCCcEEEecee------------EeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCC
Q 022176 62 NGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPN 128 (301)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~------------~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~-~~~~~ 128 (301)
..++.+.|++.|+++..+|=+ ...+. + ..+++ +.+......-+..++..-....+.+++ .+.+-
T Consensus 176 ~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~g-g-~~~~~-i~~~~~A~~niv~~~~~~~~~a~~Le~~~giP~ 252 (435)
T cd01974 176 MREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPG-G-TTLEE-LKDAGNAKATLALQEYATEKTAKFLEKKCKVPV 252 (435)
T ss_pred HHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCC-C-CCHHH-HHhhccCcEEEEECccccHHHHHHHHHHhCCCe
Confidence 689999999999999866521 11111 1 12222 335566666666666544455666655 33332
Q ss_pred ceE-EEEc-hhhHHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHhCCC
Q 022176 129 VRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGF 202 (301)
Q Consensus 129 ~~i-~avG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~~G~ 202 (301)
+.. +-+| ..|.+.+++.. ...|..+ |+... -+.+.+.+.+. ...|+++.+..+..-.-.+.+.|.+.|.
T Consensus 253 ~~~~~p~G~~~t~~~l~~l~--~~~g~~~---~~~i~~er~~~~~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~elGm 327 (435)
T cd01974 253 ETLNMPIGVAATDEFLMALS--ELTGKPI---PEELEEERGRLVDAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLELGM 327 (435)
T ss_pred eecCCCcChHHHHHHHHHHH--HHhCCCC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHHCCC
Confidence 222 1233 34555555441 1114432 21110 11233444331 1267899887765555668899999999
Q ss_pred eeEEEeee
Q 022176 203 EVVRLNTY 210 (301)
Q Consensus 203 ~v~~~~vY 210 (301)
++..+.++
T Consensus 328 ~v~~~~~~ 335 (435)
T cd01974 328 EPVHVLTG 335 (435)
T ss_pred EEEEEEeC
Confidence 98665553
No 173
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=73.14 E-value=92 Score=30.07 Aligned_cols=145 Identities=12% Similarity=0.103 Sum_probs=82.9
Q ss_pred CchHHHHHHHHhCCCcEEEeceeE-------------eeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cC
Q 022176 60 GKNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AG 125 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~-------------~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~-~~ 125 (301)
.+..++.+.|++.|+++..+|=+. ..+..+ ..+++ +.+......-+..++.+ ....+.+++ .+
T Consensus 181 ~d~~elk~lL~~~Gl~~~~l~d~s~~ld~~~~~~~~~~~~~gg-~t~ee-i~~~~~A~lniv~~~~~-~~~a~~Lee~~g 257 (432)
T TIGR01285 181 GDIEELRRMVEAFGLKPIILPDLSRSLDGHLADDDFSPITQGG-TTLEQ-IRQIGQSCCTLAIGESM-RRAASLLADRCG 257 (432)
T ss_pred cCHHHHHHHHHHcCCceEEecccccccCCCCCCCccceeCCCC-CcHHH-HHhhccCcEEEEEChhH-HHHHHHHHHHHC
Confidence 567899999999999998876332 111111 12332 23455555555567765 556677764 33
Q ss_pred CCCceE-EEEch-hhHHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHh
Q 022176 126 TPNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSN 199 (301)
Q Consensus 126 ~~~~~i-~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~ 199 (301)
.+-+.. .-+|- .|.+.|++.. .+.|..+ |+... -+-+.+.+.+. ...|+|+.+..+....-.+.+.|.+
T Consensus 258 iP~~~~~~p~G~~~t~~~l~~l~--~~~g~~~---~~~~~~~r~~~~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e 332 (432)
T TIGR01285 258 VPYIVFPSLMGLEAVDAFLHVLM--KISGRAV---PERFERQRRQLQDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS 332 (432)
T ss_pred CCeEecCCCcChHHHHHHHHHHH--HHHCCCc---cHHHHHHHHHHHHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH
Confidence 332222 12565 5666666652 1114432 22111 11233444321 1267899888776666789999999
Q ss_pred CCCeeEEEeeeee
Q 022176 200 RGFEVVRLNTYTT 212 (301)
Q Consensus 200 ~G~~v~~~~vY~~ 212 (301)
.|.+|..+.++..
T Consensus 333 lGm~v~~~~~~~~ 345 (432)
T TIGR01285 333 MGAQIVAAVTTTG 345 (432)
T ss_pred CCCEEEEEEeCCC
Confidence 9999987777654
No 174
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=73.08 E-value=36 Score=25.38 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=44.7
Q ss_pred CEEEEEcCCcCh-----hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCC
Q 022176 179 CTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQW 253 (301)
Q Consensus 179 ~~vLi~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~ 253 (301)
++||++||.+.. ..+.+.++++|+++ .++.. . ..++.....++| +++++|.....+-+.-+.....
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~---~v~a~---~--~~~~~~~~~~~D-vill~pqi~~~~~~i~~~~~~~ 74 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPV---KIAAG---S--YGAAGEKLDDAD-VVLLAPQVAYMLPDLKKETDKK 74 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcE---EEEEe---c--HHHHHhhcCCCC-EEEECchHHHHHHHHHHHhhhc
Confidence 689999998764 34566777888764 22221 1 112222246788 5566666555444333222223
Q ss_pred CceEEEECHHHH
Q 022176 254 SNSVACIGETTA 265 (301)
Q Consensus 254 ~~~i~aIG~~Ta 265 (301)
++++..|.+...
T Consensus 75 ~ipv~~I~~~~Y 86 (95)
T TIGR00853 75 GIPVEVINGAQY 86 (95)
T ss_pred CCCEEEeChhhc
Confidence 678988988543
No 175
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=72.97 E-value=9.1 Score=31.70 Aligned_cols=66 Identities=15% Similarity=0.042 Sum_probs=42.5
Q ss_pred hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH-------HHHHHHHHHH-cCCCCceEEE
Q 022176 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-------GSVFLEAWKE-AGTPNVRIGV 133 (301)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a-------v~~f~~~l~~-~~~~~~~i~a 133 (301)
++.++..|++.|++|...|+-+... + ++++||.||+-++-= +..|++...+ ..-...-++|
T Consensus 18 A~~iA~~L~e~g~qvdi~dl~~~~~----------~-~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~ 86 (175)
T COG4635 18 AEYIASHLRESGIQVDIQDLHAVEE----------P-ALEDYDAVVIGASIRYGHFHEAVQSFVKKHAEALSTKPSAFFS 86 (175)
T ss_pred HHHHHHHhhhcCCeeeeeehhhhhc----------c-ChhhCceEEEecchhhhhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 4677888999999998777655542 1 568999999988754 3444432222 1123456777
Q ss_pred Echhh
Q 022176 134 VGAGT 138 (301)
Q Consensus 134 vG~~T 138 (301)
|+...
T Consensus 87 vnl~a 91 (175)
T COG4635 87 VNLTA 91 (175)
T ss_pred eehhh
Confidence 77643
No 176
>PRK06703 flavodoxin; Provisional
Probab=72.88 E-value=10 Score=30.52 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh--------HHHHHHHHHHHHcCCCCceEEEE
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------EAGSVFLEAWKEAGTPNVRIGVV 134 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~--------~av~~f~~~l~~~~~~~~~i~av 134 (301)
..+++.|++.|.++....+-+.. . ..+.++|.|+|-|+ ..+..|+..+....+.+.+++++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~----~-------~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vf 88 (151)
T PRK06703 20 DLIKVSLDAFDHEVVLQEMDGMD----A-------EELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVF 88 (151)
T ss_pred HHHHHHHHhcCCceEEEehhhCC----H-------HHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEE
Confidence 34445566677776654442211 0 13467899999664 24666777665544556777777
Q ss_pred ch
Q 022176 135 GA 136 (301)
Q Consensus 135 G~ 136 (301)
|-
T Consensus 89 g~ 90 (151)
T PRK06703 89 GS 90 (151)
T ss_pred cc
Confidence 64
No 177
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=71.97 E-value=15 Score=32.93 Aligned_cols=139 Identities=21% Similarity=0.284 Sum_probs=79.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc-CCCccEEEEe-----------ChHHHHHHHHHHHHcCC---C
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIIT-----------SPEAGSVFLEAWKEAGT---P 127 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~-l~~~d~Iift-----------S~~av~~f~~~l~~~~~---~ 127 (301)
.+..+.|.+.|++=+.+..+.+.|..+++.+.+.++. ...|+-|.+. |...++.+.+.+.+.-. +
T Consensus 61 ~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~~~ 140 (262)
T PF06180_consen 61 EEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKKRK 140 (262)
T ss_dssp HHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT-T
T ss_pred HHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhccccCC
Confidence 3555778889999999999999988777777766644 3467777665 45566777777765322 4
Q ss_pred CceEEEEchhhHH-------HHHHHhhcccCCCceeec---CCCCcHHHHHHHhccCCCCCCEE-----EEEcCCcCh--
Q 022176 128 NVRIGVVGAGTAS-------IFEEVIQSSKCSLDVAFS---PSKATGKILASELPKNGKKKCTV-----LYPASAKAS-- 190 (301)
Q Consensus 128 ~~~i~avG~~Ta~-------~L~~~~~~~~~G~~~~~~---p~~~~~e~L~~~l~~~~~~~~~v-----Li~rg~~~~-- 190 (301)
+-.++-+|.+|.. .|+..++ ..|....++ -..++-+++++.|.+... ++| +++.|+...
T Consensus 141 ~~a~vlmGHGt~h~an~~Y~~l~~~l~--~~~~~~v~vgtvEG~P~~~~vi~~L~~~g~--k~V~L~PlMlVAGdHa~nD 216 (262)
T PF06180_consen 141 DEAVVLMGHGTPHPANAAYSALQAMLK--KHGYPNVFVGTVEGYPSLEDVIARLKKKGI--KKVHLIPLMLVAGDHAKND 216 (262)
T ss_dssp TEEEEEEE---SCHHHHHHHHHHHHHH--CCT-TTEEEEETTSSSBHHHHHHHHHHHT---SEEEEEEESSS--HHHHCC
T ss_pred CCEEEEEeCCCCCCccHHHHHHHHHHH--hCCCCeEEEEEeCCCCCHHHHHHHHHhcCC--CeEEEEecccccchhhhhh
Confidence 6778888887742 3333322 124333232 224567888888876432 333 344555432
Q ss_pred ------hHHHHHHHhCCCeeE
Q 022176 191 ------NEIEEGLSNRGFEVV 205 (301)
Q Consensus 191 ------~~L~~~L~~~G~~v~ 205 (301)
+.....|++.|++|.
T Consensus 217 maGde~dSWks~L~~~G~~v~ 237 (262)
T PF06180_consen 217 MAGDEEDSWKSRLEAAGFEVT 237 (262)
T ss_dssp CCSSSTTSHHHHHHHTT-EEE
T ss_pred hcCCCcchHHHHHHHCCCEEE
Confidence 356889999998763
No 178
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=71.36 E-value=99 Score=29.69 Aligned_cols=36 Identities=8% Similarity=0.052 Sum_probs=29.8
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 44 ~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.++|+.|.+|..+-+-. +...|...|.+.|++|...
T Consensus 26 ~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~ 62 (406)
T TIGR00936 26 EEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWT 62 (406)
T ss_pred ccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEE
Confidence 34999999999887654 6678889999999998866
No 179
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=71.18 E-value=78 Score=28.41 Aligned_cols=176 Identities=9% Similarity=0.101 Sum_probs=90.8
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
+.+.+.++++|+++...+. ..+.+...+.++. -.+.|.||+.+.. .....++.+.+ .++|++.++...
T Consensus 18 ~~i~~~a~~~g~~v~~~~~-----~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~---~~iPvV~~d~~~ 89 (302)
T TIGR02634 18 DIFVAAAESLGAKVFVQSA-----NGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKD---EGIKVVAYDRLI 89 (302)
T ss_pred HHHHHHHHhcCCEEEEEeC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHH---CCCeEEEecCcC
Confidence 4677788899998875432 1122222223322 2579999998753 33444555544 468999998653
Q ss_pred HHHHHHHhhcccCCCceeecCC-CCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhC---C-CeeEE
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR---G-FEVVR 206 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~-~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~---G-~~v~~ 206 (301)
.. . .....+..+ ...+..+++.|.+.. ..++++++.|.... .-+.+.+++. + ..+..
T Consensus 90 ~~----~------~~~~~V~~d~~~~g~~~~~~L~~~g-~~~~i~~i~g~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~ 158 (302)
T TIGR02634 90 ND----A------DIDFYLSFDNEKVGEMQARAVLEAA-PKGNYFLMGGSPTDNNAKLLRGGQMKVLQPAIDSGDIKIVG 158 (302)
T ss_pred CC----C------CccEEEecCHHHHHHHHHHHHHhhC-CCCCEEEEeCCCCCcchHHHHHHHHHHHhhhccCCCeEEec
Confidence 11 1 221112222 233455666665543 12367777664331 2233345442 1 22210
Q ss_pred EeeeeeeeCCCCcH---HHHHH-c----CCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEEC
Q 022176 207 LNTYTTEPVHHVDQ---TVLKQ-A----LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIG 261 (301)
Q Consensus 207 ~~vY~~~~~~~~~~---~~~~~-~----~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG 261 (301)
..|. ...... +..+. + ..+++|+..+-..+...++.+.+.+. .++.++...
T Consensus 159 -~~~~---~~~~~~~~~~~~~~ll~~~~~~~~aI~~~~D~~A~g~~~al~~~g~~~di~Vvg~d 218 (302)
T TIGR02634 159 -DQWV---DGWLPENALRIMENALTANDNKVDAVVASNDATAGGAIQALTAQGLAGKVPISGQD 218 (302)
T ss_pred -CcCC---CCCCHHHHHHHHHHHHHhCCCCccEEEECCCchHHHHHHHHHHCCCCCCeEEEcCC
Confidence 1111 111111 12222 2 35899999988878778887776553 256777775
No 180
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=70.67 E-value=61 Score=28.00 Aligned_cols=93 Identities=11% Similarity=0.120 Sum_probs=54.1
Q ss_pred CeEEEeCCC-CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHHHcC
Q 022176 51 PKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (301)
Q Consensus 51 ~~IlitR~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l~~~~ 125 (301)
|+|++.... .....+...|++.|+++..+|.-... ...... .+..+|.||++ ++.....-.+.++...
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~----~~~~~~---~~~~~dgliisGGp~~~~~~~~~~~~i~~~~ 73 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPR----LADEAA---VAAQFDGVLLSPGPGTPERAGASIDMVRACA 73 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcC----HHHHHH---hhcCCCEEEECCCCCChhhcchHHHHHHHHH
Confidence 456665443 34557888999999999988775311 111111 14679999998 5554332222232222
Q ss_pred CCCceEEEEchhhHHHHHHHhhcccCCCcee
Q 022176 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (301)
Q Consensus 126 ~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~ 156 (301)
..+++++.|.-+- +.|-.++ |-++.
T Consensus 74 ~~~~PiLGIC~G~-Qlla~a~-----GG~v~ 98 (214)
T PRK07765 74 AAGTPLLGVCLGH-QAIGVAF-----GATVD 98 (214)
T ss_pred hCCCCEEEEccCH-HHHHHHh-----CCEEe
Confidence 2368887777764 4444443 77764
No 181
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=70.64 E-value=49 Score=28.83 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=58.7
Q ss_pred EEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeee--------------eCCCCcHHHHHHc--CCCCEEEEEChH-HHHH
Q 022176 180 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE--------------PVHHVDQTVLKQA--LSIPVVAVASPS-AVRS 242 (301)
Q Consensus 180 ~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~--------------~~~~~~~~~~~~~--~~~d~I~ftS~s-av~~ 242 (301)
+++++....-...+.+.|.+.|.+|.-+...+.. ..+......++.+ .++|+++..+.. .+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N~ 81 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVNS 81 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHHH
Confidence 4555555555556666666666555443332221 1111223344443 578887777777 5555
Q ss_pred HHHhhhcc--cCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHH
Q 022176 243 WVNLISDT--EQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGW 287 (301)
Q Consensus 243 ~~~~l~~~--~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~l 287 (301)
++-.+... +...+.+-+-.+.-.+.+++.|+..++.|+.-....+
T Consensus 82 i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l 128 (225)
T COG0569 82 VLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRL 128 (225)
T ss_pred HHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHH
Confidence 54444332 2224444566888888899999777665554333333
No 182
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.37 E-value=65 Score=29.36 Aligned_cols=150 Identities=21% Similarity=0.159 Sum_probs=81.2
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc---CCCccEEEEeChHH--HH--HHHHHHHHcCCCCceEEEEch
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPEA--GS--VFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~---l~~~d~IiftS~~a--v~--~f~~~l~~~~~~~~~i~avG~ 136 (301)
.-.+.+++.|+++..+-+-+.. ..+++.+.+++ ....|.|++--|-- .+ ..++.+. +..-+=++.+
T Consensus 51 ~k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~----p~KDVDGl~~ 123 (285)
T PRK14191 51 MKIKACERVGMDSDLHTLQENT---TEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAID----PNKDVDGFHP 123 (285)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCC----ccccccccCh
Confidence 3445677789887654442221 22445555544 46688999887732 21 1222221 1112222223
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcCC-cChhHHHHHHHhCCCeeEEEeeeeee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASA-KASNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~-~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.-...|- . |-. .+.| -|+.+.++.|.... ..|++++++... .-...+...|.++|++|+.+....
T Consensus 124 ~n~g~l~-~------g~~-~~~P--cTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-- 191 (285)
T PRK14191 124 LNIGKLC-S------QLD-GFVP--ATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-- 191 (285)
T ss_pred hhHHHHh-c------CCC-CCCC--CcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--
Confidence 2222221 1 322 2444 46788877776543 368898877665 567789999999999987553211
Q ss_pred eCCCCcHHHHHHcCCCCEEEEEChH
Q 022176 214 PVHHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
..+.+...+.|+|+-..+.
T Consensus 192 ------~~l~~~~~~ADIvV~AvG~ 210 (285)
T PRK14191 192 ------KDLSFYTQNADIVCVGVGK 210 (285)
T ss_pred ------HHHHHHHHhCCEEEEecCC
Confidence 1122234577888776643
No 183
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=70.13 E-value=1.1e+02 Score=29.48 Aligned_cols=143 Identities=14% Similarity=0.094 Sum_probs=80.7
Q ss_pred chHHHHHHHHhCCCcEEEeceeEe------------eeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCC
Q 022176 61 KNGKLIKALAKHRIDCLELPLIQH------------AQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTP 127 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~------------~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~-~~~~ 127 (301)
+..++.+.|++.|+++..+|.+.- .+..+ ..+++ +.++.....-+..++..-..+.+.+++ .+.+
T Consensus 170 d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg-~~~e~-i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP 247 (428)
T cd01965 170 DVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGG-TTLEE-IRDAGNAKATIALGEYSGRKAAKALEEKFGVP 247 (428)
T ss_pred CHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCC-CcHHH-HHHhccCcEEEEEChhhhHHHHHHHHHHHCCC
Confidence 468999999999999999876511 11111 22333 345677777888888444556666654 3333
Q ss_pred CceEE-EEc-hhhHHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHhCC
Q 022176 128 NVRIG-VVG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG 201 (301)
Q Consensus 128 ~~~i~-avG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~~G 201 (301)
-+..- -+| ..|.+.|++.. ...|... |+... -+.+++.+.+. ...|+++++..+....-.+.+.|.+.|
T Consensus 248 ~~~~~~p~G~~~t~~~l~~l~--~~~g~~~---~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~~~~~~l~~~L~e~G 322 (428)
T cd01965 248 YILFPTPIGLKATDEFLRALS--KLSGKPI---PEELERERGRLLDAMLDSHFYLGGKRVAIAGDPDLLLGLSRFLLEMG 322 (428)
T ss_pred eeecCCCcChHHHHHHHHHHH--HHHCCCC---CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcChHHHHHHHHHHHHcC
Confidence 22221 355 34555555541 0014322 22110 11122222111 126789988876665667999999999
Q ss_pred CeeEEEeee
Q 022176 202 FEVVRLNTY 210 (301)
Q Consensus 202 ~~v~~~~vY 210 (301)
.+|..+.+.
T Consensus 323 ~~v~~v~~~ 331 (428)
T cd01965 323 AEPVAAVTG 331 (428)
T ss_pred CcceEEEEc
Confidence 998665553
No 184
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=70.12 E-value=74 Score=27.68 Aligned_cols=153 Identities=15% Similarity=0.036 Sum_probs=76.0
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhccc-CCCceeecCCCCcHHHHHHHhccCCCCCC
Q 022176 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSK-CSLDVAFSPSKATGKILASELPKNGKKKC 179 (301)
Q Consensus 101 ~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~-~G~~~~~~p~~~~~e~L~~~l~~~~~~~~ 179 (301)
...|.||..+..+.... . + ...+++++.+|.......... .... .+.....+......+..++.+.+.....+
T Consensus 59 ~~vd~iI~~~~~~~~~~-~-~---~~~~iPvV~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 132 (281)
T cd06325 59 DKPDLIVAIATPAAQAA-A-N---ATKDIPIVFTAVTDPVGAGLV-KSLEKPGGNVTGVSDLVPVETQLELLKKLLPDAK 132 (281)
T ss_pred cCCCEEEEcCcHHHHHH-H-H---cCCCCCEEEEecCCccccccc-cccccCCCceeCeecccchHHHHHHHHHHCCCCc
Confidence 57899998765443322 1 2 124678888874311110000 0000 01111112223334555566655322346
Q ss_pred EEEEEcCCc------ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH-cCCCCEEEEEChHHHHHHHHhhhcccC
Q 022176 180 TVLYPASAK------ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNLISDTEQ 252 (301)
Q Consensus 180 ~vLi~rg~~------~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~I~ftS~sav~~~~~~l~~~~~ 252 (301)
++.++.+.. ....+.+.+++.|.++..... .......+..+. +...|+|++.+-..+...++.+.+.+.
T Consensus 133 ~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~dai~~~~d~~a~~~~~~~~~~~~ 208 (281)
T cd06325 133 TVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATV----SSSNDVQQAAQSLAGKVDAIYVPTDNTVASAMEAVVKVAN 208 (281)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEec----CCHHHHHHHHHHhcccCCEEEEcCchhHHhHHHHHHHHHH
Confidence 888774432 125567778888876544211 111111122222 345799988877766666666554432
Q ss_pred -CCceEEEECHH
Q 022176 253 -WSNSVACIGET 263 (301)
Q Consensus 253 -~~~~i~aIG~~ 263 (301)
.+++++++...
T Consensus 209 ~~~ipvig~d~~ 220 (281)
T cd06325 209 EAKIPVIASDDD 220 (281)
T ss_pred HcCCCEEEcCHH
Confidence 36788888764
No 185
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=69.66 E-value=58 Score=29.56 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=54.8
Q ss_pred CEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEE
Q 022176 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVA 258 (301)
Q Consensus 179 ~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~ 258 (301)
.+++++.|+...+.|.+.+++.|.. ....|. .. + +.+.+...|+++..|. ...+++.+.. +++++
T Consensus 210 ~~~~~~~g~~~~~~l~~~~~~~~l~--~~v~~~---~~-~---~~~~l~~ad~~v~~~g--~~~l~Ea~~~----g~Pvv 274 (348)
T TIGR01133 210 IQIVHQTGKNDLEKVKNVYQELGIE--AIVTFI---DE-N---MAAAYAAADLVISRAG--ASTVAELAAA----GVPAI 274 (348)
T ss_pred cEEEEECCcchHHHHHHHHhhCCce--EEecCc---cc-C---HHHHHHhCCEEEECCC--hhHHHHHHHc----CCCEE
Confidence 4555666655555566656655531 122222 01 1 1222356787776554 2344444432 56666
Q ss_pred EEC------H--HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 259 CIG------E--TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 259 aIG------~--~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
++. . ..++.+.+.|.-..+.+...+.++|.++|.+.+.++
T Consensus 275 ~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 275 LIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDP 322 (348)
T ss_pred EeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCH
Confidence 542 1 134567665544433233447999999999887543
No 186
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=69.61 E-value=54 Score=27.19 Aligned_cols=124 Identities=10% Similarity=0.114 Sum_probs=68.7
Q ss_pred EEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCC-CCCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEe
Q 022176 131 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK-KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 131 i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~-~~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~ 208 (301)
+++=|.....+++.. |... |...++-+|+..+.+... .+.+|.++.+... .+.+.+.|++..-.+.-+-
T Consensus 9 v~~DG~~i~~~~~~~------g~~~---~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg 79 (172)
T PF03808_consen 9 VLPDGMPIVWAARLL------GRPL---PERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVG 79 (172)
T ss_pred EecCCHHHHHHHHHc------CCCC---CcccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 566677777777776 7654 456677777777655332 4578888888765 4667788887732332222
Q ss_pred eeeeeeCCCCcHHHHHHc--CCCCEEEE--EChHHHHHHHHhhhcccCCCceEEEECHHHH
Q 022176 209 TYTTEPVHHVDQTVLKQA--LSIPVVAV--ASPSAVRSWVNLISDTEQWSNSVACIGETTA 265 (301)
Q Consensus 209 vY~~~~~~~~~~~~~~~~--~~~d~I~f--tS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta 265 (301)
.|.--..+...+.+++.+ .++|+|++ .+|..= .|+...... .....++|+|-..-
T Consensus 80 ~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~-l~~~v~i~vG~~~d 138 (172)
T PF03808_consen 80 YHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQE-RWIARHRQR-LPAGVIIGVGGAFD 138 (172)
T ss_pred ecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHH-CCCCEEEEECchhh
Confidence 222111122223344433 45665554 566554 344333322 22346788887543
No 187
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=69.41 E-value=41 Score=30.15 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=55.5
Q ss_pred CCeEEEeCCCC--chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-H----------H
Q 022176 50 NPKVVVTRERG--KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-S----------V 116 (301)
Q Consensus 50 g~~IlitR~~~--~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av-~----------~ 116 (301)
+++|+|.+..+ ...++...|++.|+++..+++....... ..+.+||.|||.-..+. + .
T Consensus 3 ~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~---------~~l~~~DgLvipGGfs~gD~l~~g~~~~~~ 73 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAER---------KSVSDYDCLVIPGGFSAGDYIRAGAIFAAR 73 (261)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccc---------cchhhCCEEEECCCCCcccccccchhhHHH
Confidence 46787766543 2456789999999999888764321110 13578999999886321 1 1
Q ss_pred HH----HHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCce
Q 022176 117 FL----EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (301)
Q Consensus 117 f~----~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~ 155 (301)
+. +.+.+.-..+.+++.|..+. +.|-+. |+-+
T Consensus 74 l~~~l~~~Ik~f~~~gkpVLGICnG~-QlLa~~------GlLp 109 (261)
T PRK01175 74 LKAVLRKDIEEFIDEGYPIIGICNGF-QVLVEL------GLLP 109 (261)
T ss_pred HHHHHHHHHHHHHHCCCeEEEECHHH-HHHHHC------CCCC
Confidence 11 22222222467888888764 678777 8754
No 188
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=69.29 E-value=1.2e+02 Score=29.96 Aligned_cols=143 Identities=21% Similarity=0.139 Sum_probs=83.2
Q ss_pred CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEc-hh
Q 022176 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AG 137 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-~~~~~~i~avG-~~ 137 (301)
.+-.++...|++.|+++..++. . + ..++ .|.++...+.-|..++.......+++++. +.+-+...=+| ..
T Consensus 175 ~D~~EikrlL~~~Gi~vn~v~p-----~-g-~s~~-di~~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG~~~ 246 (519)
T PRK02910 175 DDLTELRRLLATLGIDVNVVAP-----L-G-ASPA-DLKRLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIGVGA 246 (519)
T ss_pred hHHHHHHHHHHHcCCeEEEEeC-----C-C-CCHH-HHHhcccCcEEEEeCHHHHHHHHHHHHHHhCCcccccccccHHH
Confidence 4568999999999999987652 1 1 1222 24467778888888887666677777643 34433334466 34
Q ss_pred hHHHHHHHhhcccCCCceee----cCCC-CcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHH-hCCCeeEEEe
Q 022176 138 TASIFEEVIQSSKCSLDVAF----SPSK-ATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLN 208 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~----~p~~-~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~-~~G~~v~~~~ 208 (301)
|.+-|++..+ ..|..... +... ..... +...+......|+|+.+..+..-.-.+.+.|. +.|.+|..+-
T Consensus 247 T~~fL~~la~--~~g~~~~~~e~~i~~~~~~~~~l~~~~~~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~~g 324 (519)
T PRK02910 247 TARFIREVAE--LLNLDGADLEAFILDGLSAPSRLPWFSRSVDSTYLTGKRVFVFGDATHAVAAARILSDELGFEVVGAG 324 (519)
T ss_pred HHHHHHHHHH--HhCCChhhhHHHHHHHHhhhhhhhHHHHhhhhHhhcCCEEEEEcCcHHHHHHHHHHHHhcCCeEEEEe
Confidence 6666666511 11433210 0000 00000 11111111226789988877666677888898 7999997776
Q ss_pred eeee
Q 022176 209 TYTT 212 (301)
Q Consensus 209 vY~~ 212 (301)
+|..
T Consensus 325 t~~~ 328 (519)
T PRK02910 325 TYLR 328 (519)
T ss_pred cCCc
Confidence 6654
No 189
>PRK06490 glutamine amidotransferase; Provisional
Probab=69.00 E-value=39 Score=29.80 Aligned_cols=94 Identities=11% Similarity=-0.024 Sum_probs=53.8
Q ss_pred CCCeEEEeCCC--CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH-H-------HHHH
Q 022176 49 SNPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-G-------SVFL 118 (301)
Q Consensus 49 ~g~~IlitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a-v-------~~f~ 118 (301)
..++|++.+.. +....+.+.|++.|.++..+....-.+.++ .+.+||.||+|-... + ....
T Consensus 6 ~~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~---------~l~~~dgvii~Ggp~~~~d~~~wi~~~~ 76 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPD---------TLEDHAGAVIFGGPMSANDPDDFIRREI 76 (239)
T ss_pred CCceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCC---------cccccCEEEEECCCCCCCCCchHHHHHH
Confidence 36788887654 456789999999999888654332222221 356799888873322 1 1112
Q ss_pred HHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceee
Q 022176 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF 157 (301)
Q Consensus 119 ~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~ 157 (301)
+.+.+....+++++.|.-+- +.|-..+ |-++.-
T Consensus 77 ~~i~~~~~~~~PvLGIC~G~-Qlla~al-----GG~V~~ 109 (239)
T PRK06490 77 DWISVPLKENKPFLGICLGA-QMLARHL-----GARVAP 109 (239)
T ss_pred HHHHHHHHCCCCEEEECHhH-HHHHHHc-----CCEeec
Confidence 22222112367887777664 4444443 766643
No 190
>PRK07308 flavodoxin; Validated
Probab=68.81 E-value=17 Score=29.14 Aligned_cols=74 Identities=18% Similarity=0.108 Sum_probs=42.8
Q ss_pred eEEEeCCCCchHHH----HHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH--------HHHHHHH
Q 022176 52 KVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLE 119 (301)
Q Consensus 52 ~IlitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~--------av~~f~~ 119 (301)
.|+.....+..+++ ++.|++.|.++...++-... . ..+..+|.|+|-|+. .+..|++
T Consensus 5 ~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~----~-------~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~ 73 (146)
T PRK07308 5 KIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVD----A-------SDFEDADIAIVATYTYGDGELPDEIVDFYE 73 (146)
T ss_pred EEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCC----H-------hHhccCCEEEEEeCccCCCCCCHHHHHHHH
Confidence 45554444444444 45566678766533322111 0 134678888887754 3566777
Q ss_pred HHHHcCCCCceEEEEch
Q 022176 120 AWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 120 ~l~~~~~~~~~i~avG~ 136 (301)
.+....+.+.+++++|-
T Consensus 74 ~l~~~~l~~k~~~vfG~ 90 (146)
T PRK07308 74 DLADLDLSGKIYGVVGS 90 (146)
T ss_pred HHhcCCCCCCEEEEEee
Confidence 66655556778887777
No 191
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=68.76 E-value=20 Score=29.66 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=33.8
Q ss_pred HHHHHHhCCCeeEEEeeeeeee--------CCCCcHHHHHHcCCCCEEEEECh-------HHHHHHHHhhhc
Q 022176 193 IEEGLSNRGFEVVRLNTYTTEP--------VHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISD 249 (301)
Q Consensus 193 L~~~L~~~G~~v~~~~vY~~~~--------~~~~~~~~~~~~~~~d~I~ftS~-------sav~~~~~~l~~ 249 (301)
+.+.|.+.|.++..+.+++--. ..+....+.+.+...|.|+|.|| ..+++|++.+..
T Consensus 22 ~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~ 93 (171)
T TIGR03567 22 VREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQ 93 (171)
T ss_pred HHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCCh
Confidence 3445555566665555543110 00111234444678999999998 688999988853
No 192
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.35 E-value=84 Score=27.65 Aligned_cols=192 Identities=13% Similarity=0.020 Sum_probs=91.5
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|++++.... . .+.+...+.++. ....|.||+++.. .....++.+.+ .++|++.+|....
T Consensus 21 gi~~~a~~~gy~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~---~~iPvV~~d~~~~ 92 (280)
T cd06315 21 GVREAAKAIGWNLRILDG---R--GSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQK---AGIPVVGWHAGPE 92 (280)
T ss_pred HHHHHHHHcCcEEEEECC---C--CCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH---CCCCEEEecCCCC
Confidence 344677788988765432 1 122222222322 3679999998753 22333444443 4688999986421
Q ss_pred HHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh------hHHHHHHHhC-CCeeEEEeeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNR-GFEVVRLNTYT 211 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~------~~L~~~L~~~-G~~v~~~~vY~ 211 (301)
..-...- ..+.. +..+. ..+..+++.|.+.....++++++.+.... ..+...++.. +..+....-+.
T Consensus 93 ~~~~~~~----~~~~~-v~~D~~~~~~~~~~~L~~~~~G~~~i~~i~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~ 167 (280)
T cd06315 93 PGPIEEP----GIFYN-VTTDPLAVAEVAALYAIANSGGKAGVVIFTDSRFSIAKAKANAMKEIIEACKGCTVLSIEDVP 167 (280)
T ss_pred CCcccCC----ceeEE-ecCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCccHHHHHHHHHHHHHhCCCCEEEEecccC
Confidence 1000000 00111 12222 23455666666542234688888654321 2233333332 23321111011
Q ss_pred eee-CCCCc---HHHHHHc-CCCCEEEEEChHHHHHHHHhhhcccCC---CceEEEECHHHHHHH
Q 022176 212 TEP-VHHVD---QTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQW---SNSVACIGETTASAA 268 (301)
Q Consensus 212 ~~~-~~~~~---~~~~~~~-~~~d~I~ftS~sav~~~~~~l~~~~~~---~~~i~aIG~~Ta~al 268 (301)
... ..... .+++... ..+|+|+..+-..+..++..+.+.+.. +..+++.+......+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~D~~A~g~~~~l~~~g~~~p~~~~~i~~~d~~~~~~ 232 (280)
T cd06315 168 ISRTATRMPALTARLLQRYGDKWTHSLAINDLYFDYMAPPLASAGRKADEDPRNISAGDGSAAAF 232 (280)
T ss_pred cchhhhhhHHHHHHHHHhcCcccceecccchhhhHHhHHHHHHhcccCCCCceEEecCCCCHHHH
Confidence 100 00001 1122222 347999999999888888887766532 445555545444444
No 193
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=67.98 E-value=21 Score=29.55 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=21.3
Q ss_pred HHHHcCCCCEEEEECh-------HHHHHHHHhhh
Q 022176 222 VLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (301)
Q Consensus 222 ~~~~~~~~d~I~ftS~-------sav~~~~~~l~ 248 (301)
+.+.+...|.|+|.|| ..+++|++.+.
T Consensus 62 ~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~ 95 (174)
T TIGR03566 62 ILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVD 95 (174)
T ss_pred HHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcC
Confidence 4445678999999998 67888888875
No 194
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=67.79 E-value=63 Score=27.29 Aligned_cols=53 Identities=17% Similarity=-0.069 Sum_probs=41.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCC
Q 022176 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (301)
Q Consensus 164 ~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (301)
.+.+++.+.+....|+.++++.+......+.+..+..|..+....+|+....+
T Consensus 124 ~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (187)
T PRK00107 124 LSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLD 176 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCC
Confidence 45565666555557889999999888888999999999999999999865443
No 195
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=67.79 E-value=61 Score=29.75 Aligned_cols=156 Identities=17% Similarity=0.071 Sum_probs=82.1
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHH---hcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l---~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
-.+.+++.|+++..+-+-+.. ..+++.+.+ .+....|.|++--|---..--+.+.+.-.+..-+=.+.+.-...
T Consensus 60 k~k~a~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~ 136 (299)
T PLN02516 60 KRKACAEVGIKSFDVDLPENI---SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGK 136 (299)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhh
Confidence 345677889888765543222 123344444 34467889998877321111111111111112222222332222
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEE-EcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCC
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLY-PASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV 218 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi-~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~ 218 (301)
|-.- |....+.| -|+.+.++.|.... ..|+++++ =|+..-...|...|.++|++|+.+.... . .
T Consensus 137 l~~~------~~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T----~-n 203 (299)
T PLN02516 137 LAMK------GREPLFLP--CTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT----P-D 203 (299)
T ss_pred HhcC------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC----C-C
Confidence 2111 11222444 46777777776543 36788665 5677778889999999999887665432 1 1
Q ss_pred cHHHHHHcCCCCEEEEEChHH
Q 022176 219 DQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 219 ~~~~~~~~~~~d~I~ftS~sa 239 (301)
..+ ...+.|+|+..-+..
T Consensus 204 l~~---~~~~ADIvv~AvGk~ 221 (299)
T PLN02516 204 PES---IVREADIVIAAAGQA 221 (299)
T ss_pred HHH---HHhhCCEEEEcCCCc
Confidence 122 235678888776653
No 196
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=67.65 E-value=62 Score=33.52 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=65.0
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH-----HHHHHH
Q 022176 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLE 119 (301)
Q Consensus 50 g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a-----v~~f~~ 119 (301)
.++|++..... +..-....|+..|++|..-... . ..+.+-+.. .-++.|.|+++|..+ +..+.+
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~--~---s~e~~v~aa-~~~~a~ivvlcs~d~~~~e~~~~l~~ 655 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLF--Q---TPEEAARQA-VENDVHVVGVSSLAAGHKTLVPALIE 655 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCC--C---CHHHHHHHH-HHcCCCEEEEeccchhhHHHHHHHHH
Confidence 34566543322 3345667888999999533322 1 112233333 236889999988763 445667
Q ss_pred HHHHcCCCCceEEEEch---hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 120 AWKEAGTPNVRIGVVGA---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 120 ~l~~~~~~~~~i~avG~---~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
.+++.+.+++++++=|. ...+.+++. |+...+.+ +-+..++++.+.
T Consensus 656 ~Lk~~G~~~v~vl~GG~~~~~~~~~l~~a------GvD~~i~~-g~d~~~~L~~l~ 704 (714)
T PRK09426 656 ALKKLGREDIMVVVGGVIPPQDYDFLYEA------GVAAIFGP-GTVIADAAIDLL 704 (714)
T ss_pred HHHhcCCCCcEEEEeCCCChhhHHHHHhC------CCCEEECC-CCCHHHHHHHHH
Confidence 77777766777776553 344577887 99875544 445555555554
No 197
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=66.58 E-value=56 Score=24.93 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=52.4
Q ss_pred CEEEEEcCCcCh-----hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHhhhcc-
Q 022176 179 CTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDT- 250 (301)
Q Consensus 179 ~~vLi~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~~- 250 (301)
++||++||.+.. ..+.+.++++|.++. +... .. .++.... .++|+ +++.|. ++...+.+++.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~---i~a~---~~--~e~~~~~~~~~~Dv-Ill~PQ-i~~~~~~i~~~~ 71 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIE---VDAI---TA--TEGEKAIAAAEYDL-YLVSPQ-TKMYFKQFEEAG 71 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceE---EEEe---cH--HHHHHhhccCCCCE-EEEChH-HHHHHHHHHHHh
Confidence 478999988763 345666778887632 2211 11 1111111 35784 444454 44444444432
Q ss_pred cCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHH
Q 022176 251 EQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 294 (301)
Q Consensus 251 ~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~ 294 (301)
...++++.+|-+. ++-|-..+.+.+++.|++.
T Consensus 72 ~~~~ipv~~I~~~------------~Y~~~~~~~~~~~~~~~~~ 103 (104)
T PRK09590 72 AKVGKPVVQIPPQ------------AYIPIPMGIEKMAKLILEN 103 (104)
T ss_pred hhcCCCEEEeCHH------------HcCCCccCHHHHHHHHHhc
Confidence 2236788888772 2334457888888888763
No 198
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=66.45 E-value=15 Score=34.82 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=50.7
Q ss_pred cCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe
Q 022176 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT 109 (301)
Q Consensus 44 ~~~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift 109 (301)
.|.-.+|.+||+.....-+..+++.++.+|+++..+-.---+ ..+.+.+++.|++-.+++.|.+|
T Consensus 74 ~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~-~v~p~~v~~~L~~~~~~~~V~~v 138 (383)
T COG0075 74 ASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE-AVDPEEVEEALDKDPDIKAVAVV 138 (383)
T ss_pred HhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCC-CCCHHHHHHHHhcCCCccEEEEE
Confidence 445567889999999999999999999999999865443222 22567888888767789899886
No 199
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=65.94 E-value=98 Score=27.53 Aligned_cols=192 Identities=14% Similarity=0.098 Sum_probs=96.5
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-HHHHHHHHHHHcCCC-
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTP- 127 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-av~~f~~~l~~~~~~- 127 (301)
.++||+.-...++.++++.|.+.|+.++..-.-+... ......-+.+-+- ..+.+.+.+.+.+.+
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~-------------~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~ 68 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGG-------------PADLPGPVRVGGFGGAEGLAAYLREEGIDL 68 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCC-------------cccCCceEEECCCCCHHHHHHHHHHCCCCE
Confidence 4679998888899999999999997665422222110 0111112222222 233333333343321
Q ss_pred ----CceEEE-EchhhHHHHHHHhhcccCCCcee-ec-C------C-----CCcHHHHHHHhccCCCCCCEEEEEcCCcC
Q 022176 128 ----NVRIGV-VGAGTASIFEEVIQSSKCSLDVA-FS-P------S-----KATGKILASELPKNGKKKCTVLYPASAKA 189 (301)
Q Consensus 128 ----~~~i~a-vG~~Ta~~L~~~~~~~~~G~~~~-~~-p------~-----~~~~e~L~~~l~~~~~~~~~vLi~rg~~~ 189 (301)
.-|+++ |-....++.++. |+.-. +. | . -.+.+++++.+.+. ++|++.-|.+.
T Consensus 69 VIDATHPfA~~is~~a~~ac~~~------~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~~----~~vllttGsk~ 138 (248)
T PRK08057 69 VIDATHPYAAQISANAAAACRAL------GIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAPF----RRVLLTTGRQP 138 (248)
T ss_pred EEECCCccHHHHHHHHHHHHHHh------CCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhcc----CCEEEecCcch
Confidence 223322 444445555555 65431 11 0 0 12456666666543 68999888776
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEE---C-----
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI---G----- 261 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aI---G----- 261 (301)
-..+...+ .+ -.+|-++.+.... +.-+..-++|...-|.+.+.=.+++++.+ +.+++. |
T Consensus 139 l~~f~~~~--~~-----~r~~~RvLP~~~s---~~g~~~~~iiam~gPfs~e~n~aL~~~~~---i~~lVtK~SG~~g~~ 205 (248)
T PRK08057 139 LAHFAAIL--PE-----HRLLVRVLPPPEV---LLGLPRAEIIALRGPFSLELERALLRQHR---IDVVVTKNSGGAGTE 205 (248)
T ss_pred HHHHhhcC--CC-----CEEEEEECCCchh---cCCCChhhEEEeeCCCCHHHHHHHHHHcC---CCEEEEcCCCchhhH
Confidence 55543321 11 2355555433321 11123456777777766555455555432 222221 2
Q ss_pred HHHHHHHHHcCCCeeEe
Q 022176 262 ETTASAAKRLGLKNVYY 278 (301)
Q Consensus 262 ~~Ta~al~~~G~~~~~v 278 (301)
++. +++++.|+.++++
T Consensus 206 eKi-~AA~~lgi~vivI 221 (248)
T PRK08057 206 AKL-EAARELGIPVVMI 221 (248)
T ss_pred HHH-HHHHHcCCeEEEE
Confidence 222 5678899987655
No 200
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=65.93 E-value=43 Score=25.34 Aligned_cols=75 Identities=11% Similarity=0.185 Sum_probs=41.3
Q ss_pred EEEEEcCCcCh-----hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcc-cCC
Q 022176 180 TVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDT-EQW 253 (301)
Q Consensus 180 ~vLi~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~-~~~ 253 (301)
+||+.|+.+.. +.+.+.++++|.++... .+.. .++.....++| +++++|... ..++.+++. ...
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~-a~~~-------~e~~~~~~~~D-vill~PQv~-~~~~~i~~~~~~~ 71 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAA-AGAY-------GSHYDMIPDYD-LVILAPQMA-SYYDELKKDTDRL 71 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE-EeeH-------HHHHHhccCCC-EEEEcChHH-HHHHHHHHHhhhc
Confidence 58888877653 35667788899875422 2111 12222356788 555566544 444444332 223
Q ss_pred CceEEEECHHH
Q 022176 254 SNSVACIGETT 264 (301)
Q Consensus 254 ~~~i~aIG~~T 264 (301)
++++..|-+..
T Consensus 72 ~ipv~~I~~~~ 82 (99)
T cd05565 72 GIKLVTTTGKQ 82 (99)
T ss_pred CCCEEEeCHHH
Confidence 57777776643
No 201
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.87 E-value=74 Score=29.00 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=82.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc---CCCccEEEEeChH--HHH--HHHHHHHHc-CCCCceEEEEc
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPE--AGS--VFLEAWKEA-GTPNVRIGVVG 135 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~---l~~~d~IiftS~~--av~--~f~~~l~~~-~~~~~~i~avG 135 (301)
.-.+.+++.|+++..+-+-+. ...+++.+.+++ ....|.|++--|- .++ ..++.+... ..|++.-.-.|
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~---~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g 128 (286)
T PRK14175 52 SKKKAAEKIGMISEIVHLEET---ATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIG 128 (286)
T ss_pred HHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchH
Confidence 344567778988775544222 122345444443 4678899988772 222 122222111 01222222222
Q ss_pred hhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcCCc-ChhHHHHHHHhCCCeeEEEeeeee
Q 022176 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.|- . |- ..+.| -|+.+.++.|.... ..|++++++.... -...+...|.+.|++|+.+.-+.
T Consensus 129 -----~l~-~------~~-~~~~P--cTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t- 192 (286)
T PRK14175 129 -----KLY-I------DE-QTFVP--CTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS- 192 (286)
T ss_pred -----hHh-c------CC-CCCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-
Confidence 111 1 21 12444 36778777776543 3788998887755 67889999999999887554321
Q ss_pred eeCCCCcHHHHHHcCCCCEEEEEChHH
Q 022176 213 EPVHHVDQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~I~ftS~sa 239 (301)
..+.+...+.|+|+-+-+..
T Consensus 193 -------~~l~~~~~~ADIVIsAvg~p 212 (286)
T PRK14175 193 -------KDMASYLKDADVIVSAVGKP 212 (286)
T ss_pred -------hhHHHHHhhCCEEEECCCCC
Confidence 12223356788887776553
No 202
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=65.68 E-value=37 Score=35.07 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=64.4
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-----HHHHHHHhhhcccCCCceEEEEC-
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSWVNLISDTEQWSNSVACIG- 261 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~s-----av~~~~~~l~~~~~~~~~i~aIG- 261 (301)
.......|+..|++|..-..+ ...+++.+.. .+.|+|++.|.. .+..+.+.+++.+..++++++=|
T Consensus 599 a~fv~~~l~~~GfeV~~~~~~------~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 599 AKVIATAFADLGFDVDIGPLF------QTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred HHHHHHHHHhCCeeEecCCCC------CCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 456788899999887322222 1123333332 578999998865 45566666666543345565443
Q ss_pred --HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHH
Q 022176 262 --ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 262 --~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
+...+.+++.|+...+ ...-+..++++.+.+.+.
T Consensus 673 ~~~~~~~~l~~aGvD~~i-~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 673 IPPQDYDFLYEAGVAAIF-GPGTVIADAAIDLLELLS 708 (714)
T ss_pred CChhhHHHHHhCCCCEEE-CCCCCHHHHHHHHHHHHH
Confidence 4445688999998754 566689999999888773
No 203
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=65.62 E-value=20 Score=29.64 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=38.3
Q ss_pred HHHHHhCCCcEEEeceeEeee------CCCchHHHHHHhcCCCccEEEEeCh-------HHHHHHHHHHHHcCCCCceEE
Q 022176 66 IKALAKHRIDCLELPLIQHAQ------GPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGTPNVRIG 132 (301)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~------~~d~~~l~~~l~~l~~~d~IiftS~-------~av~~f~~~l~~~~~~~~~i~ 132 (301)
.+.+++.|.++..+-+.+... ....+.+....+++...|.|||.|| ...+.|++.+....+.+.++.
T Consensus 23 ~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~~~l~~K~v~ 102 (171)
T TIGR03567 23 REALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQRALRGKVVL 102 (171)
T ss_pred HHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCChhhhCCCEEE
Confidence 445556787776665543211 0012455556666788999999998 345566654432223344444
Q ss_pred E
Q 022176 133 V 133 (301)
Q Consensus 133 a 133 (301)
.
T Consensus 103 ~ 103 (171)
T TIGR03567 103 P 103 (171)
T ss_pred E
Confidence 3
No 204
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=65.59 E-value=27 Score=34.17 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCCC-----------------chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-----------------KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-----------------~~~~l~~~L~~~G~~v~~~ 79 (301)
++|.|++||||-... .+-.+++.+..+|++|..+
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI 302 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLI 302 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEE
Confidence 479999999995431 3468899999999999876
No 205
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=65.54 E-value=76 Score=31.61 Aligned_cols=114 Identities=11% Similarity=0.168 Sum_probs=69.5
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceeE------------eeeCCCchHHHHHHh--cCCCccEEEEeChHHHHH
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSV 116 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~d~~~l~~~l~--~l~~~d~IiftS~~av~~ 116 (301)
-+|+|.--..-+..+++.|+++|.+++.+-.=+ .... |..+ ++.++ .+++.|.++.+.++..+.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~G-D~~~-~~~L~~a~i~~a~~viv~~~~~~~~ 495 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLG-NAAN-EEIMQLAHLDCARWLLLTIPNGYEA 495 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEc-CCCC-HHHHHhcCccccCEEEEEcCChHHH
Confidence 468888777788899999999998776442110 0111 0000 12222 457899888887664442
Q ss_pred --HHHHHHHcCCCCceEEEEc--hhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 117 --FLEAWKEAGTPNVRIGVVG--AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 117 --f~~~l~~~~~~~~~i~avG--~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
......+. .++.++++.- +...+.+++. |.+..+.|+...++.+.+.+..
T Consensus 496 ~~iv~~~~~~-~~~~~iiar~~~~~~~~~l~~~------Gad~vv~p~~~~a~~i~~~l~~ 549 (558)
T PRK10669 496 GEIVASAREK-RPDIEIIARAHYDDEVAYITER------GANQVVMGEREIARTMLELLET 549 (558)
T ss_pred HHHHHHHHHH-CCCCeEEEEECCHHHHHHHHHc------CCCEEEChHHHHHHHHHHHhcC
Confidence 33333333 2456776654 4445556777 9988888887777777766654
No 206
>PRK09271 flavodoxin; Provisional
Probab=65.32 E-value=32 Score=28.09 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH--------HHHHHHHHHHHcCCCCceEEEE
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVV 134 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~--------av~~f~~~l~~~~~~~~~i~av 134 (301)
+.+++.|++.|+++... .+... + +.....++.++|.|+|-|+. .+..|++.+......+.+++++
T Consensus 19 ~~ia~~l~~~g~~v~~~---~~~~~-~---~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avf 91 (160)
T PRK09271 19 REIEERCEEAGHEVDWV---ETDVQ-T---LAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVF 91 (160)
T ss_pred HHHHHHHHhCCCeeEEE---ecccc-c---ccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEE
Confidence 45556667778776422 22111 1 01111245678999998852 4677887776533334556666
Q ss_pred ch
Q 022176 135 GA 136 (301)
Q Consensus 135 G~ 136 (301)
|-
T Consensus 92 gs 93 (160)
T PRK09271 92 GT 93 (160)
T ss_pred ec
Confidence 54
No 207
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=65.25 E-value=1e+02 Score=28.30 Aligned_cols=186 Identities=12% Similarity=0.085 Sum_probs=86.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|+++.....- ...+.+...+.++. -.++|.||+.+.. .+...+ .+.+ .++++++++....
T Consensus 67 gi~~aa~~~G~~l~i~~~~---~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l-~~~~---~giPvV~~~~~~~ 139 (343)
T PRK10936 67 GMVEEAKRLGVDLKVLEAG---GYYNLAKQQQQLEQCVAWGADAILLGAVTPDGLNPDL-ELQA---ANIPVIALVNGID 139 (343)
T ss_pred HHHHHHHHhCCEEEEEcCC---CCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHH-HHHH---CCCCEEEecCCCC
Confidence 4445666789877664321 11122222222322 2579999987533 221222 2322 4678887753321
Q ss_pred HHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCC---CCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEe
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNG---KKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~---~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~ 208 (301)
.. +....+..+. ..+...++.|.+.. ...++++++.|.... .-+.+.+++.|+++.. .
T Consensus 140 ----~~------~~~~~V~~D~~~~g~~aa~~L~~~~~~~~g~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~i~~~~-~ 208 (343)
T PRK10936 140 ----SP------QVTTRVGVSWYQMGYQAGRYLAQWHPKGSKPLNVALLPGPEGAGGSKAVEQGFRAAIAGSDVRIVD-I 208 (343)
T ss_pred ----Cc------cceEEEecChHHHHHHHHHHHHHHHHhcCCCceEEEEECCCCCchHHHHHHHHHHHHhcCCCEEEE-e
Confidence 11 1101112222 22333334443321 124689888775432 2356667777776533 1
Q ss_pred eeeeeeCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEE--CHHHHHHHHHcCC
Q 022176 209 TYTTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACI--GETTASAAKRLGL 273 (301)
Q Consensus 209 vY~~~~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aI--G~~Ta~al~~~G~ 273 (301)
.+ .+...+ ...+. + .++|+|+ .+...+...++.+.+.+. .++.++++ .|...+++++ |.
T Consensus 209 ~~----~~~~~~~~~~~~~~~l~~~~~~~ai~-~~d~~A~ga~~al~~~g~~~di~Vvg~~~~p~~~~~i~~-G~ 277 (343)
T PRK10936 209 AY----GDNDKELQRNLLQELLERHPDIDYIA-GSAVAAEAAIGELRGRNLTDKIKLVSFYLSHQVYRGLKR-GK 277 (343)
T ss_pred ec----CCCcHHHHHHHHHHHHHhCCCccEEE-eCCHHHHHHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHc-CC
Confidence 11 111111 11111 2 3578887 455555555666555442 24555553 4555566654 54
No 208
>PRK08250 glutamine amidotransferase; Provisional
Probab=65.08 E-value=43 Score=29.42 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=51.8
Q ss_pred CeEEEeCCC--CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-HHH------------
Q 022176 51 PKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGS------------ 115 (301)
Q Consensus 51 ~~IlitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-av~------------ 115 (301)
|+|++.+.. +....+...+++.|+++....+.+-.+.++ ....||.||++-.. .+.
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p~---------~~~~~d~vii~GGp~~~~~~~~~~p~~~~~ 71 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALPE---------NADGFDLLIVMGGPQSPRTTREECPYFDSK 71 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCCC---------CccccCEEEECCCCCChhhccccccccchH
Confidence 467776554 466788899999998887755443222211 34679999997542 211
Q ss_pred HHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCcee
Q 022176 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (301)
Q Consensus 116 ~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~ 156 (301)
...+.+...-..+++++.|--+- +.|-.++ |-++.
T Consensus 72 ~~~~~i~~~~~~~~PvlGIC~G~-Qlla~al-----Gg~V~ 106 (235)
T PRK08250 72 AEQRLINQAIKAGKAVIGVCLGA-QLIGEAL-----GAKYE 106 (235)
T ss_pred HHHHHHHHHHHcCCCEEEEChhH-HHHHHHh-----Cceec
Confidence 11112222112467887777764 4444443 76663
No 209
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=64.86 E-value=52 Score=28.70 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=47.1
Q ss_pred CCCCCeEEE----eCCCCchHHHHHHH----HhCCCcEEEeceeEeeeCCC-----chHHHHHHhcCCCccEEEEeChH-
Q 022176 47 SNSNPKVVV----TRERGKNGKLIKAL----AKHRIDCLELPLIQHAQGPD-----TDRLSSVLNADTIFDWIIITSPE- 112 (301)
Q Consensus 47 ~l~g~~Ili----tR~~~~~~~l~~~L----~~~G~~v~~~P~~~~~~~~d-----~~~l~~~l~~l~~~d~IiftS~~- 112 (301)
+.+.++|++ +|+...+..+++.+ .+.|+++..+.+-. .|..+ .......-+.+...|++||.||.
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~-lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY 101 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPG-LPLPDAAHADHPKVRELRQLSEWSEGQVWCSPER 101 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCccc-CCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc
Confidence 444566665 46666666555544 44688877665322 22221 11222222345788999999983
Q ss_pred ------HHHHHHHHHHHc-----CCCCceEEEEch
Q 022176 113 ------AGSVFLEAWKEA-----GTPNVRIGVVGA 136 (301)
Q Consensus 113 ------av~~f~~~l~~~-----~~~~~~i~avG~ 136 (301)
+.+.+++.+... .+.+.++.++|-
T Consensus 102 n~sipg~LKNaiDwls~~~~~~~~~~~Kpvaivga 136 (219)
T TIGR02690 102 HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQV 136 (219)
T ss_pred ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEe
Confidence 333344433221 245666766664
No 210
>PRK05569 flavodoxin; Provisional
Probab=64.79 E-value=19 Score=28.51 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=25.6
Q ss_pred cCCCccEEEEeChH---------HHHHHHHHHHHcCCCCceEEEEch
Q 022176 99 ADTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 99 ~l~~~d~IiftS~~---------av~~f~~~l~~~~~~~~~i~avG~ 136 (301)
++.++|.|+|-||. .+..|++.+......+.+++++|.
T Consensus 45 ~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t 91 (141)
T PRK05569 45 DVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGS 91 (141)
T ss_pred HHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeC
Confidence 34689999999984 255666666443445677777763
No 211
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=64.58 E-value=32 Score=28.64 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=44.3
Q ss_pred cHHHHHHHhccCC--CCCCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH
Q 022176 163 TGKILASELPKNG--KKKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 163 ~~e~L~~~l~~~~--~~~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sa 239 (301)
++...++.+.+.. ..+++++++...+. ...+...|.+.|+.|. +..+.. +++.+.+.+.|+|+-+.++.
T Consensus 27 ~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~---v~~r~~-----~~l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 27 TPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT---VCHSKT-----KNLKEHTKQADIVIVAVGKP 98 (168)
T ss_pred hHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE---EEECCc-----hhHHHHHhhCCEEEEcCCCC
Confidence 4555444444332 36899999999874 6669999999998643 333321 22333467889888777664
No 212
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=64.43 E-value=45 Score=27.66 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEc--hhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG--AGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l--~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG--~~T 138 (301)
..+.+.|...|++++ ......|..-.-.+++-+ +.+|.+++.|..+ -|...+....-.+.++.++| +.|
T Consensus 69 ~~l~~~l~~~Gf~pv-----~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~--DF~~Lv~~lre~G~~V~v~g~~~~t 141 (160)
T TIGR00288 69 DKLIEAVVNQGFEPI-----IVAGDVDVRMAVEAMELIYNPNIDAVALVTRDA--DFLPVINKAKENGKETIVIGAEPGF 141 (160)
T ss_pred HHHHHHHHHCCceEE-----EecCcccHHHHHHHHHHhccCCCCEEEEEeccH--hHHHHHHHHHHCCCEEEEEeCCCCC
Q ss_pred HHHHHHH
Q 022176 139 ASIFEEV 145 (301)
Q Consensus 139 a~~L~~~ 145 (301)
+..|++.
T Consensus 142 s~~L~~a 148 (160)
T TIGR00288 142 STALQNS 148 (160)
T ss_pred hHHHHHh
No 213
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=64.42 E-value=1.4e+02 Score=28.72 Aligned_cols=216 Identities=10% Similarity=0.040 Sum_probs=111.3
Q ss_pred CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEch-h
Q 022176 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA-G 137 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~-~~~~~~~i~avG~-~ 137 (301)
.+..++...|++.|+++.... ......++ +.+..+..+-+..++.+...+.+.+++ .+.+-+..--+|. .
T Consensus 185 ~d~~el~~lL~~~Gi~v~~~~----~~~~t~ee----i~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~~~~p~Gi~~ 256 (421)
T cd01976 185 GDAWASRILLEEMGLRVVAQW----SGDGTLNE----MENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWMEYNFFGPTK 256 (421)
T ss_pred ccHHHHHHHHHHcCCeEEEEe----CCCCCHHH----HHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEEecccCCHHH
Confidence 456789999999999997322 11122232 335667777777777766656666655 2332111112443 4
Q ss_pred hHHHHHHHhhcccCCCceeecCCCC------cHHHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEee
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKA------TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~------~~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (301)
|.+.|++.. ...|.. +|+.. .-+.+.+.+.+. ...|+|+++..|......+...|.+.|.+|...-+
T Consensus 257 t~~~l~~ia--~~~g~~---~~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~ 331 (421)
T cd01976 257 IAESLRKIA--AYFDDE---ITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGY 331 (421)
T ss_pred HHHHHHHHH--HHhCch---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEEe
Confidence 566666541 111332 12110 011133333321 13689999887766666778899999999876444
Q ss_pred eeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEec-CC---C--C
Q 022176 210 YTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYP-TH---P--G 283 (301)
Q Consensus 210 Y~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~-~~---p--s 283 (301)
+.. .+...+...+.+. .+.+++.. .....+.+.+.+. ...++.-|..-...+++.|+.-+.+. .+ | .
T Consensus 332 ~~~--~~~~~~~~~~~~~-~~~~i~~~-~d~~e~~~~i~~~---~pDliig~~~~~~~a~k~giP~~~~~~~~~~~~~~G 404 (421)
T cd01976 332 EFA--HRDDYERTEVIPK-EGTLLYDD-VTHYELEEFVKRL---KPDLIGSGIKEKYVFQKMGIPFRQMHSWDYSGPYHG 404 (421)
T ss_pred ecC--CHHHHhhHHhhcC-CceEEEcC-CCHHHHHHHHHHh---CCCEEEecCcchhhhhhcCCCeEeCCccccCCCccc
Confidence 321 1111122222222 24444433 2233333444332 23444445556666777888754332 22 3 5
Q ss_pred HHHHHHHHHHHH
Q 022176 284 LEGWVDSILEAL 295 (301)
Q Consensus 284 ~e~ll~ai~~~~ 295 (301)
.+++++.+.+..
T Consensus 405 y~G~~~~~~~i~ 416 (421)
T cd01976 405 FDGFAIFARDMD 416 (421)
T ss_pred hhhHHHHHHHHH
Confidence 677776666544
No 214
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=64.29 E-value=1.1e+02 Score=27.53 Aligned_cols=137 Identities=18% Similarity=0.145 Sum_probs=75.0
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCC
Q 022176 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (301)
Q Consensus 101 ~~~d~Iift-S~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~ 178 (301)
++.+.|+-. +...+....+.+.+. +++++.....+.. ... .....+.|.. .....+++.+.+.. ..
T Consensus 68 ~~v~~vvg~~~s~~~~~~~~~~~~~---~ip~i~~~~~~~~--~~~------~~~f~~~~~~~~~~~~~~~~~~~~~-g~ 135 (343)
T PF13458_consen 68 DGVDAVVGPLSSAQAEAVAPIAEEA---GIPYISPSASSPS--PDS------PNVFRLSPSDSQQAAALAEYLAKKL-GA 135 (343)
T ss_dssp STESEEEESSSHHHHHHHHHHHHHH---T-EEEESSGGGGT--TTH------TTEEESS--HHHHHHHHHHHHHHTT-TT
T ss_pred cCcEEEEecCCcHHHHHHHHHHHhc---CcEEEEeeccCCC--CCC------CcEEEEeccccHHHHHHHHHHHHHc-CC
Confidence 678888765 566666677777663 4566664433321 111 2222223322 34556777665432 35
Q ss_pred CEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEE-EChHHHHHHHHhhhcc
Q 022176 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISDT 250 (301)
Q Consensus 179 ~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~f-tS~sav~~~~~~l~~~ 250 (301)
+++.++..+.. ...+.+.+++.|.++.....|. +...+....+..+ .++|+|++ ..+...-.|++.+.+.
T Consensus 136 ~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~ 213 (343)
T PF13458_consen 136 KKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYP--PGDTDFSALVQQLKSAGPDVVVLAGDPADAAAFLRQLRQL 213 (343)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE---TTSSHHHHHHHHHHHTTTSEEEEESTHHHHHHHHHHHHHT
T ss_pred cEEEEEecCchhhhHHHHHHHHHHhhcCceeccceecc--cccccchHHHHHHhhcCCCEEEEeccchhHHHHHHHHHhh
Confidence 78887766542 3467888999998854444443 1222222233333 57887655 5666688888888765
Q ss_pred c
Q 022176 251 E 251 (301)
Q Consensus 251 ~ 251 (301)
+
T Consensus 214 ~ 214 (343)
T PF13458_consen 214 G 214 (343)
T ss_dssp T
T ss_pred c
Confidence 4
No 215
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=64.28 E-value=54 Score=25.26 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=49.8
Q ss_pred hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh----HHHHHHHHHHHHcCCCCceEEEEchh
Q 022176 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (301)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~----~av~~f~~~l~~~~~~~~~i~avG~~ 137 (301)
..++...|++.|.+++.. .+.+.....++....+++||++-- .....+++.+...+ .++|+|.++..
T Consensus 6 ~~~l~~~L~~~~~~vv~~--------~~~dd~~~~i~~~~~i~avvi~~d~~~~~~~~~ll~~i~~~~-~~iPVFl~~~~ 76 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDA--------DSTDDALAIIESFTDIAAVVISWDGEEEDEAQELLDKIRERN-FGIPVFLLAER 76 (115)
T ss_dssp HHHHHHHHHHTTTEEEEE--------SSHHHHHHHHHCTTTEEEEEEECHHHHHHHHHHHHHHHHHHS-TT-EEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEe--------CChHHHHHHHHhCCCeeEEEEEcccccchhHHHHHHHHHHhC-CCCCEEEEecC
Confidence 357889999999888743 233455566777889999999987 66666777776654 58999999985
Q ss_pred h
Q 022176 138 T 138 (301)
Q Consensus 138 T 138 (301)
+
T Consensus 77 ~ 77 (115)
T PF03709_consen 77 D 77 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 216
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=63.88 E-value=73 Score=30.04 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=50.4
Q ss_pred HHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCcee--ecCCCCcHHHHHHHhccCCCCCCEEEEEc-----CCcCh
Q 022176 118 LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA--FSPSKATGKILASELPKNGKKKCTVLYPA-----SAKAS 190 (301)
Q Consensus 118 ~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~--~~p~~~~~e~L~~~l~~~~~~~~~vLi~r-----g~~~~ 190 (301)
++.|.+....+.+|.+=|+.=.++|+++ |+.-. ++.... .-..++.|.+.. -++|++.. |+...
T Consensus 14 ~~~l~~~~~~~~~ilveg~~d~~~l~~l------gi~g~~i~~s~~p-~~~cad~ii~~g--i~rVVi~~D~d~~G~~~~ 84 (360)
T PRK14719 14 IDDLKLLAEKGIPILVEGPNDILSLKNL------KINANFITVSNTP-VFQIADDLIAEN--ISEVILLTDFDRAGRVYA 84 (360)
T ss_pred HHHHHHhhhCCCEEEEEcchHHHHHHHc------CCCCcEEEEeCCc-hHHHHHHHHHcC--CCEEEEEECCCCCCCccc
Confidence 3334333345799999999999999999 98522 222222 223556665432 25777765 22333
Q ss_pred hHHHHHHHhCCCeeE
Q 022176 191 NEIEEGLSNRGFEVV 205 (301)
Q Consensus 191 ~~L~~~L~~~G~~v~ 205 (301)
..+.+.|+++|+.|.
T Consensus 85 ~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 85 KNIMEEFQSRGIKVN 99 (360)
T ss_pred hHHHHHHHHCCCEEE
Confidence 466899999999994
No 217
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=63.22 E-value=1.1e+02 Score=28.67 Aligned_cols=68 Identities=25% Similarity=0.184 Sum_probs=55.8
Q ss_pred CCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHH
Q 022176 227 LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 294 (301)
Q Consensus 227 ~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~ 294 (301)
..+|.|++.-|..+....+..+.... ++...-+--..|++.+.+.|...++.|..-+.+.+.+.+++.
T Consensus 91 ~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 91 LGVDAVIVADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred cCCCEEEEcCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 48999999999999988877654321 356666778999999999999888889999999999887664
No 218
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=63.15 E-value=54 Score=25.61 Aligned_cols=95 Identities=20% Similarity=0.213 Sum_probs=55.0
Q ss_pred EEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCCCceE
Q 022176 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRI 131 (301)
Q Consensus 53 IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av-~~f~~~l~~~~~~~~~i 131 (301)
||+|.+- .+...+.|++ |+++...+ ..+.+++.+ .+.++|.|+..+...+ +.+++.+ +++|+
T Consensus 1 ili~~~~--~~~~~~~l~~-~~~v~~~~------~~~~~~~~~---~l~~~d~ii~~~~~~~~~~~l~~~-----~~Lk~ 63 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEE-GFEVEFCD------SPSEEELAE---RLKDADAIIVGSGTPLTAEVLEAA-----PNLKL 63 (133)
T ss_dssp EEESSS---SHHHHHHHHH-TSEEEEES------SSSHHHHHH---HHTTESEEEESTTSTBSHHHHHHH-----TT-SE
T ss_pred eEEeccC--CHHHHHHHHC-CceEEEeC------CCCHHHHHH---HhCCCeEEEEcCCCCcCHHHHhcc-----ceeEE
Confidence 6788854 4677788888 77777666 222334444 3578999998776622 3444444 34454
Q ss_pred EE---Echh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHHHh
Q 022176 132 GV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (301)
Q Consensus 132 ~a---vG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l 171 (301)
++ +|-. =-+++.+. |+.+.-.|. .+++..++..
T Consensus 64 I~~~~~G~d~id~~~a~~~------gI~V~n~~g-~~~~aVAE~a 101 (133)
T PF00389_consen 64 ISTAGAGVDNIDLEAAKER------GIPVTNVPG-YNAEAVAEHA 101 (133)
T ss_dssp EEESSSSCTTB-HHHHHHT------TSEEEE-TT-TTHHHHHHHH
T ss_pred EEEcccccCcccHHHHhhC------eEEEEEeCC-cCCcchhccc
Confidence 43 2222 14667777 988866654 4566665543
No 219
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=62.84 E-value=76 Score=26.63 Aligned_cols=87 Identities=14% Similarity=0.157 Sum_probs=50.8
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe-ChHH---HHHHHHHHHHcC
Q 022176 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-SPEA---GSVFLEAWKEAG 125 (301)
Q Consensus 51 ~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift-S~~a---v~~f~~~l~~~~ 125 (301)
|+||+....+ ....+.+.|++.|+++..++..+.. . ..+..+|.||++ ++.. ...+.+.+++ -
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~-------~----~~l~~~d~iIi~gGp~~~~~~~~~~~~i~~-~ 69 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLD-------L----DEVENFSHILISPGPDVPRAYPQLFAMLER-Y 69 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccC-------h----hHhccCCEEEECCCCCChHHhhHHHHHHHH-h
Confidence 6788876653 4556999999999988876654321 1 124578999987 4442 2222333332 1
Q ss_pred CCCceEEEEchhhHHHHHHHhhcccCCCce
Q 022176 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (301)
Q Consensus 126 ~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~ 155 (301)
..+.+++.|--+- +.|-.++ |-++
T Consensus 70 ~~~~PiLGIClG~-Qlla~~~-----Gg~V 93 (190)
T PRK06895 70 HQHKSILGVCLGH-QTLCEFF-----GGEL 93 (190)
T ss_pred cCCCCEEEEcHHH-HHHHHHh-----CCeE
Confidence 2366776555543 3444443 7665
No 220
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=62.04 E-value=45 Score=27.80 Aligned_cols=87 Identities=20% Similarity=0.078 Sum_probs=52.6
Q ss_pred EEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHHHcCCCCc
Q 022176 54 VVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAGTPNV 129 (301)
Q Consensus 54 litR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l~~~~~~~~ 129 (301)
++.+.......+.+.|++.|+++..+|.-... +.+ ..+..+|.||++ |+.....+.... +.-..++
T Consensus 3 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~-----~~~----~~~~~~dgvil~gG~~~~~~~~~~~~i~-~~~~~~~ 72 (184)
T cd01743 3 LIDNYDSFTYNLVQYLRELGAEVVVVRNDEIT-----LEE----LELLNPDAIVISPGPGHPEDAGISLEII-RALAGKV 72 (184)
T ss_pred EEeCCCccHHHHHHHHHHcCCceEEEeCCCCC-----HHH----HhhcCCCEEEECCCCCCcccchhHHHHH-HHHhcCC
Confidence 45567778889999999999999987773221 111 134679998875 433222122211 2112468
Q ss_pred eEEEEchhhHHHHHHHhhcccCCCcee
Q 022176 130 RIGVVGAGTASIFEEVIQSSKCSLDVA 156 (301)
Q Consensus 130 ~i~avG~~Ta~~L~~~~~~~~~G~~~~ 156 (301)
+++.|.-+-.-....+ |-++.
T Consensus 73 PvlGIC~G~Qlla~~~------Gg~v~ 93 (184)
T cd01743 73 PILGVCLGHQAIAEAF------GGKVV 93 (184)
T ss_pred CEEEECHhHHHHHHHh------CCEEE
Confidence 8988888754444444 76654
No 221
>PRK03094 hypothetical protein; Provisional
Probab=61.35 E-value=41 Score=24.46 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=44.2
Q ss_pred ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHH
Q 022176 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAA 268 (301)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al 268 (301)
+-.++.+.|+++|.+|..+.-|.. ...+|++++|.- +..+..|+.+..
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~~~~-------------~~~~Da~VitG~----------------d~n~mgi~d~~t--- 56 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRSEQD-------------AQGCDCCVVTGQ----------------DSNVMGIADTST--- 56 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCcccc-------------cCCcCEEEEeCC----------------Ccceeccccccc---
Confidence 445789999999988865543221 357899999981 222333332211
Q ss_pred HHcCCCeeEecCCCCHHHHHHHHHHHH
Q 022176 269 KRLGLKNVYYPTHPGLEGWVDSILEAL 295 (301)
Q Consensus 269 ~~~G~~~~~v~~~ps~e~ll~ai~~~~ 295 (301)
+ .+++-+..-|.|.+.+.+++.+
T Consensus 57 ---~-~pVI~A~G~TaeEI~~~ve~r~ 79 (80)
T PRK03094 57 ---K-GSVITASGLTADEICQQVESRL 79 (80)
T ss_pred ---C-CcEEEcCCCCHHHHHHHHHHhh
Confidence 2 1345577788888888776544
No 222
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=61.04 E-value=48 Score=28.86 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=41.1
Q ss_pred HHHHHHHHhC-CCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC-CceEEEEchh
Q 022176 63 GKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~-G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~-~~~i~avG~~ 137 (301)
.-+.+.++++ |.++................+.+.+......|.|+..+-..+..+++.+.+.+.. ++.++..+..
T Consensus 142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~~di~vig~d~~ 218 (275)
T cd06320 142 EGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNNDTMALGVVEAVKNAGKQGKVLVVGTDGI 218 (275)
T ss_pred HHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEECCchhHHHHHHHHHhcCCCCCeEEEecCCC
Confidence 4466677777 7665432111101000113444555444567888887777777777888777654 4555555443
No 223
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=61.02 E-value=38 Score=32.37 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=28.9
Q ss_pred CCCCCCeEEEeCC----------------CC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRE----------------RG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~----------------~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.++.|++||||-. .+ -+..++..|.++|++|..+
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v 234 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLV 234 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEe
Confidence 5789999999987 44 3789999999999999765
No 224
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=61.00 E-value=27 Score=31.50 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=42.5
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEee-----eCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA-----QGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~-----~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
-.|.+|+++|+...+ ....+...|+++.+++.-... ...+.+.+++.+.+-.+...|++|+++
T Consensus 97 ~~gd~Vlv~~~~h~s--~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~ 164 (294)
T cd00615 97 GPGDKILIDRNCHKS--VINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPT 164 (294)
T ss_pred CCCCEEEEeCCchHH--HHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECCC
Confidence 457899999987543 445667789999888764221 123456777777443567888888875
No 225
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=60.87 E-value=52 Score=27.58 Aligned_cols=75 Identities=21% Similarity=0.155 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC--CCceEEEEchh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT--PNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~--~~~~i~avG~~ 137 (301)
..+.+.+++.|.++............+.+.+...+.+-.+.+.|++.+......+++.+.+.++ ++..+++.+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 143 EGFKAALKKAGIEVVAIEYGDLDTEKGFQALLQLLKAAPKPDAIFACNDEMAAGALKAAREAGLTPGDISIIGFDGS 219 (269)
T ss_pred HHHHHHHHhcCcEEEeccccCCCccccHHHHHHHHhcCCCCCEEEEcCchHHHHHHHHHHHcCCCCCCCEEEecccc
Confidence 4455566667744443222221111123344444433235788888777777777777777766 36666665544
No 226
>PRK05670 anthranilate synthase component II; Provisional
Probab=60.63 E-value=1e+02 Score=25.85 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=52.7
Q ss_pred EeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHHHcCCCCce
Q 022176 55 VTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAGTPNVR 130 (301)
Q Consensus 55 itR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l~~~~~~~~~ 130 (301)
|--.......+.+.|+++|+++..+|..... .+. +..+ .+|.||++ |+.......+.+... ..+.|
T Consensus 5 id~~d~f~~~i~~~l~~~g~~~~v~~~~~~~----~~~----~~~~-~~dglIlsgGpg~~~d~~~~~~~l~~~-~~~~P 74 (189)
T PRK05670 5 IDNYDSFTYNLVQYLGELGAEVVVYRNDEIT----LEE----IEAL-NPDAIVLSPGPGTPAEAGISLELIREF-AGKVP 74 (189)
T ss_pred EECCCchHHHHHHHHHHCCCcEEEEECCCCC----HHH----HHhC-CCCEEEEcCCCCChHHcchHHHHHHHh-cCCCC
Confidence 3444566778999999999999887754321 111 2233 38999997 665544333433332 24688
Q ss_pred EEEEchhhHHHHHHHhhcccCCCcee
Q 022176 131 IGVVGAGTASIFEEVIQSSKCSLDVA 156 (301)
Q Consensus 131 i~avG~~Ta~~L~~~~~~~~~G~~~~ 156 (301)
++.|.-+- +.|-.++ |-++.
T Consensus 75 vLGIClG~-Qlla~al-----Gg~v~ 94 (189)
T PRK05670 75 ILGVCLGH-QAIGEAF-----GGKVV 94 (189)
T ss_pred EEEECHHH-HHHHHHh-----CCEEE
Confidence 88887774 4444444 76653
No 227
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=60.40 E-value=70 Score=23.99 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=63.2
Q ss_pred CCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEEChH
Q 022176 161 KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPS 238 (301)
Q Consensus 161 ~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~s 238 (301)
...+..+++.|.+. +.+++++-.+... .+.+++.|..+ +. -+......++. +.+.+.++.+++.
T Consensus 7 g~~~~~i~~~L~~~---~~~vvvid~d~~~---~~~~~~~~~~~-----i~---gd~~~~~~l~~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 7 GRIGREIAEQLKEG---GIDVVVIDRDPER---VEELREEGVEV-----IY---GDATDPEVLERAGIEKADAVVILTDD 72 (116)
T ss_dssp SHHHHHHHHHHHHT---TSEEEEEESSHHH---HHHHHHTTSEE-----EE---S-TTSHHHHHHTTGGCESEEEEESSS
T ss_pred CHHHHHHHHHHHhC---CCEEEEEECCcHH---HHHHHhccccc-----cc---ccchhhhHHhhcCccccCEEEEccCC
Confidence 34567788888763 3578887766543 67788888542 22 22223344444 3688888888876
Q ss_pred HHHHHHHh--hhcccCCCceEE--EECHHHHHHHHHcCCCeeEec
Q 022176 239 AVRSWVNL--ISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYP 279 (301)
Q Consensus 239 av~~~~~~--l~~~~~~~~~i~--aIG~~Ta~al~~~G~~~~~v~ 279 (301)
-..++.-. +++.. ...+++ +-.+.-.+.+++.|...++.|
T Consensus 73 d~~n~~~~~~~r~~~-~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 73 DEENLLIALLARELN-PDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp HHHHHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred HHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 66665432 22211 234444 457888899999999887654
No 228
>PRK06849 hypothetical protein; Provisional
Probab=60.19 E-value=55 Score=30.83 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=53.7
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeE--------------eeeCC--Cc----hHHHHHHhcCCCccEEE
Q 022176 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQ--------------HAQGP--DT----DRLSSVLNADTIFDWII 107 (301)
Q Consensus 49 ~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~--------------~~~~~--d~----~~l~~~l~~l~~~d~Ii 107 (301)
.+|+||||-... .+-.+++.|.++|++|+.+-.-. ..+.+ +. +.|.+.++ -.+.|.||
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~-~~~id~vI 81 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQ-RENIDLLI 81 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHH-HcCCCEEE
Confidence 468999998765 46789999999999998753321 12112 21 23333332 35689999
Q ss_pred EeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 108 ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 108 ftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
-++-.. .+.....+.-.+..++..-+..+.+.
T Consensus 82 P~~e~~--~~~a~~~~~l~~~~~v~~~~~~~~~~ 113 (389)
T PRK06849 82 PTCEEV--FYLSHAKEELSAYCEVLHFDFELLLL 113 (389)
T ss_pred ECChHH--HhHHhhhhhhcCCcEEEcCCHHHHHH
Confidence 888653 33333322222356666666665544
No 229
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=60.03 E-value=1.4e+02 Score=28.38 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=51.8
Q ss_pred HHHHHHH--hCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH-------HHHHHHhhhcccCCCceEEEECH
Q 022176 192 EIEEGLS--NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-------VRSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 192 ~L~~~L~--~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sa-------v~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
.++++++ +.|++| .+|+.. +...+.+...+.++|.|+|-||.- +..|++.+......+.+++++|.
T Consensus 267 ~ia~g~~~~~~g~~v---~~~~~~--~~~~~~i~~~~~~~d~ii~GspT~~~~~~~~~~~~l~~l~~~~~~~K~~a~FGs 341 (394)
T PRK11921 267 AIAEGIKKANKDVTV---KLYNSA--KSDKNDIITEVFKSKAILVGSSTINRGILSSTAAILEEIKGLGFKNKKAAAFGS 341 (394)
T ss_pred HHHHHHhhcCCCCeE---EEEECC--CCCHHHHHHHHHhCCEEEEECCCcCccccHHHHHHHHHhhccCcCCCEEEEEec
Confidence 4455555 455554 444432 222334444455799999999873 45566655443333455555543
Q ss_pred ---------HHHHHHHHcCCCee----EecCCCCHHHHHHHHHHH
Q 022176 263 ---------TTASAAKRLGLKNV----YYPTHPGLEGWVDSILEA 294 (301)
Q Consensus 263 ---------~Ta~al~~~G~~~~----~v~~~ps~e~ll~ai~~~ 294 (301)
...+.++..|++.+ .+--.|+.++ ++.+.++
T Consensus 342 ygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~-~~~~~~~ 385 (394)
T PRK11921 342 YGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEA-LDRCRSF 385 (394)
T ss_pred CCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHH-HHHHHHH
Confidence 33455667888742 2334566555 4444443
No 230
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=59.85 E-value=1.5e+02 Score=27.51 Aligned_cols=140 Identities=14% Similarity=0.062 Sum_probs=78.9
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~ 143 (301)
-+.+.|++.|++|...+.- ...+.+. ++ .-+..|...+++..++.... ..+. ..++++++...
T Consensus 25 ~fe~~l~~~Gl~Ve~~~f~-----~~~~~l~-Al-~aG~iD~~~~g~~~~~~~~~----a~g~-~~~iv~v~~~~----- 87 (328)
T TIGR03427 25 IVDKWADKYGITIEVVQIN-----DYVESIN-QY-TAGKFDGCTMTNMDALTIPA----AGGV-DTTALIVGDFS----- 87 (328)
T ss_pred chhhhHHHcCCeEEEEECC-----ChHHHHH-HH-HcCCCCEEeecCHHHHHHHH----hCCC-CeEEEEEEccC-----
Confidence 3445677778777654331 1122333 34 34788887777766653211 1222 35666666432
Q ss_pred HHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHH
Q 022176 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVL 223 (301)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~ 223 (301)
. |-...+++...+.++| +|++|.+.++..+.-.|...|++.|.....+.+-...+ ....
T Consensus 88 -~------g~~~ivv~~i~svaDL---------KGKkIav~~gs~~~~ll~~aL~~aGL~~~DV~~v~~~~-----~d~~ 146 (328)
T TIGR03427 88 -N------GNDGIVLKGGKSLADL---------KGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSD-----ADIV 146 (328)
T ss_pred -C------CceEEEECCCCCHHHc---------CCCEEeccCCChHHHHHHHHHHHcCCCHHHeEEEeCCh-----HHHH
Confidence 2 3222233322222222 68999999998888889999999998754444433222 1122
Q ss_pred HH--cCCCCEEEEEChHHHH
Q 022176 224 KQ--ALSIPVVAVASPSAVR 241 (301)
Q Consensus 224 ~~--~~~~d~I~ftS~sav~ 241 (301)
.. -+++|+++..-|....
T Consensus 147 aAl~~G~VDAa~~~eP~~s~ 166 (328)
T TIGR03427 147 AAFITKDVTAVVTWNPQLSE 166 (328)
T ss_pred HHHhcCCCcEEEEcCchHHH
Confidence 22 2789998888777544
No 231
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.60 E-value=1.3e+02 Score=27.44 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=79.0
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHH---hcCCCccEEEEeChH--HHH--HHHHHHHHcCCCCceEEEEch
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGS--VFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l---~~l~~~d~IiftS~~--av~--~f~~~l~~~~~~~~~i~avG~ 136 (301)
.-.+.+++.|+++..+-+-+.. ..+++.+.+ ......|.|++--|- .++ ..++.+. +..-+=++.+
T Consensus 58 ~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~----p~KDVDGl~~ 130 (287)
T PRK14176 58 LKHKACERVGIRAEDQFLPADT---TQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAID----PAKDADGFHP 130 (287)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccC----ccccccccCh
Confidence 4445677789887755442222 223444444 345678899988773 222 1122221 1111112222
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcC-CcChhHHHHHHHhCCCeeEEEeeeeee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg-~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.-...|- . |-. .+.| -|+.+.++.|.... ..|++++++.. ..-...|...|.+.|+.|+.+.....
T Consensus 131 ~N~g~l~-~------g~~-~~~P--cTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~- 199 (287)
T PRK14176 131 YNMGKLM-I------GDE-GLVP--CTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD- 199 (287)
T ss_pred hhhhhHh-c------CCC-CCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC-
Confidence 2111111 1 322 2444 37888887776553 26788776654 44678899999999999866664221
Q ss_pred eCCCCcHHHHHHcCCCCEEEEEC
Q 022176 214 PVHHVDQTVLKQALSIPVVAVAS 236 (301)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~I~ftS 236 (301)
+ +.+...+.|+|+-..
T Consensus 200 ---~----l~~~~~~ADIvv~Av 215 (287)
T PRK14176 200 ---D----LKKYTLDADILVVAT 215 (287)
T ss_pred ---C----HHHHHhhCCEEEEcc
Confidence 1 122235678877633
No 232
>PLN03139 formate dehydrogenase; Provisional
Probab=59.52 E-value=1.6e+02 Score=28.08 Aligned_cols=157 Identities=13% Similarity=0.051 Sum_probs=82.5
Q ss_pred chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEE---Ec
Q 022176 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGV---VG 135 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~a---vG 135 (301)
....+.+.|++.|++++..+- . .. +.+.+. +.+.+.|.||.+... -+. -+.+.. .+++|+++ +|
T Consensus 63 ~~~~~~~~l~~~g~~~v~~~~--~-~~-~~~~~~---~~l~dadili~~~~~~~~~~--~e~l~~--ap~LK~I~~~g~G 131 (386)
T PLN03139 63 NALGIRDWLESQGHQYIVTDD--K-EG-PDCELE---KHIPDLHVLITTPFHPAYVT--AERIKK--AKNLELLLTAGIG 131 (386)
T ss_pred cCccHHHHHHhcCCeEEEeCC--C-CC-CHHHHH---HHhCCCeEEEEcCccCCCCC--HHHHhh--CCCccEEEECCcc
Confidence 345677889999988876541 1 11 123333 345778877643211 111 112222 23455443 33
Q ss_pred hh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHHH--------hc------------cC----------CCCCCEEEE
Q 022176 136 AG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE--------LP------------KN----------GKKKCTVLY 183 (301)
Q Consensus 136 ~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~--------l~------------~~----------~~~~~~vLi 183 (301)
-. -.+++.+. |+.+.-+|. .+++.+++. +. .| ...|++|.+
T Consensus 132 ~D~iDl~aa~~~------gI~V~n~~g-~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGI 204 (386)
T PLN03139 132 SDHIDLPAAAAA------GLTVAEVTG-SNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGT 204 (386)
T ss_pred ccccCHHHHHHC------CeEEEECCC-cCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEE
Confidence 32 22445566 888765543 233332221 00 01 126778888
Q ss_pred EcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCC---------cHHHHHHcCCCCEEEEEChH
Q 022176 184 PASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV---------DQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 184 ~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~---------~~~~~~~~~~~d~I~ftS~s 238 (301)
+.-......+.+.|...|.+|.. |++...... ...+.+.+.+.|+|++.-|.
T Consensus 205 VG~G~IG~~vA~~L~afG~~V~~---~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPl 265 (386)
T PLN03139 205 VGAGRIGRLLLQRLKPFNCNLLY---HDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPL 265 (386)
T ss_pred EeecHHHHHHHHHHHHCCCEEEE---ECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCC
Confidence 88777778899999999987644 444321100 00112223578989888874
No 233
>PRK07053 glutamine amidotransferase; Provisional
Probab=59.46 E-value=65 Score=28.27 Aligned_cols=92 Identities=8% Similarity=-0.005 Sum_probs=52.2
Q ss_pred CCeEEEeCCC--CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh-HHH---------HHH
Q 022176 50 NPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-EAG---------SVF 117 (301)
Q Consensus 50 g~~IlitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~-~av---------~~f 117 (301)
+++|+|.+.. +.-..+.+.|++.|.++..+....-...+ .++.+||.||++-. .++ ...
T Consensus 2 m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~---------~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~ 72 (234)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLET---------LDALEPDLLVVLGGPIGVYDDELYPFLAPE 72 (234)
T ss_pred CceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCC---------CCccCCCEEEECCCCCCCCCCCcCCcHHHH
Confidence 5778887655 35568999999999888766554322111 13457899988652 222 111
Q ss_pred HHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCcee
Q 022176 118 LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (301)
Q Consensus 118 ~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~ 156 (301)
.+.+++.-..+.+++.|.-+- +.|-+.+ |-++.
T Consensus 73 ~~~i~~~~~~~~PvlGIC~G~-Qlla~al-----Gg~V~ 105 (234)
T PRK07053 73 IALLRQRLAAGLPTLGICLGA-QLIARAL-----GARVY 105 (234)
T ss_pred HHHHHHHHHCCCCEEEECccH-HHHHHHc-----CCcEe
Confidence 222222112367776666553 4444443 77763
No 234
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=59.20 E-value=1.1e+02 Score=29.81 Aligned_cols=192 Identities=15% Similarity=0.115 Sum_probs=102.4
Q ss_pred CchHHHHHHHHhCCCcEEEeceeE------------eeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CC
Q 022176 60 GKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GT 126 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-~~ 126 (301)
.+-.++.+.|+..|+++..+|-+. ..+..+ ..+++ +.+......-|..++.+ ..+.+.+++. +.
T Consensus 182 ~D~~elk~lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~gg-~t~ee-i~~~~~A~lniv~~~~~-~~~a~~Lee~~Gi 258 (455)
T PRK14476 182 GDIEELREIIEAFGLEPIILPDLSGSLDGHLPDDWTPTTLGG-TTLEE-IRELGRSAATIAIGESM-RKAAEALEARTGV 258 (455)
T ss_pred ccHHHHHHHHHHcCCceEEecCccccccCCCCCcccccCCCC-CCHHH-HHhhccCcEEEEecHHH-HHHHHHHHHHhCC
Confidence 456899999999999998887442 111111 12332 33556666666677754 4667777653 33
Q ss_pred CCceE-EEEch-hhHHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHhC
Q 022176 127 PNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNR 200 (301)
Q Consensus 127 ~~~~i-~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~~ 200 (301)
+-+.. .-+|- .|.+.|++.. .+.|.. +|+... -+.+.+.+.+. ...++++.+..+....-.|.+.|.+.
T Consensus 259 P~~~~~~p~G~~~t~~~l~~l~--~~~g~~---~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~la~~L~el 333 (455)
T PRK14476 259 PYLVFPSLTGLEAVDRFIATLA--QISGRP---VPAKYRRQRAQLQDAMLDGHFYFGGKRVAIAAEPDLLLALGSFLAEM 333 (455)
T ss_pred CeEecCCCcChHHHHHHHHHHH--HHHCCC---CcHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHHHC
Confidence 32211 12554 5666666652 111432 122111 11133333321 12578988887666667799999999
Q ss_pred CCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe
Q 022176 201 GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 275 (301)
Q Consensus 201 G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~ 275 (301)
|.++..+.+... . +. .+.+. .+.+++.-...++.+ +. +..++.-|......++++|+.-
T Consensus 334 G~~v~~~~~~~~---~---~~-~~~~~-~~~i~~~D~~~le~~---~~-----~~dliig~s~~~~~a~~~gip~ 392 (455)
T PRK14476 334 GAEIVAAVTTTK---S---PA-LEDLP-AEEVLIGDLEDLEEL---AE-----GADLLITNSHGRQAAERLGIPL 392 (455)
T ss_pred CCEEEEEEeCCC---c---HH-HHhCC-cCcEEeCCHHHHHHh---cc-----CCCEEEECchhHHHHHHcCCCE
Confidence 999877666431 1 11 12232 233445544433332 22 2344444556666677777654
No 235
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.90 E-value=1.4e+02 Score=27.12 Aligned_cols=148 Identities=10% Similarity=0.045 Sum_probs=78.4
Q ss_pred HHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc---CCCccEEEEeChH--HHH--HHHHHHHHcCCCCceEEEEchhh
Q 022176 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPE--AGS--VFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~---l~~~d~IiftS~~--av~--~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.+.+++.|+++..+-+-+.. ..+++.+.+++ ....|.|+.--|- .++ ..++.+. +..-+=.+.+.-
T Consensus 54 ~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~----p~KDVDGl~~~N 126 (284)
T PRK14179 54 ERSALAAGFKSEVVRLPETI---SQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAID----PKKDVDGFHPMN 126 (284)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccC----ccccccccCHhh
Confidence 46777889888755443221 22344444443 4678899887662 221 1222221 111122222222
Q ss_pred HHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcC-CcChhHHHHHHHhCCCeeEEEeeeeeeeC
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEEGLSNRGFEVVRLNTYTTEPV 215 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg-~~~~~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (301)
...|- . |- ..+.| -|+.+.++.|.... ..|+++.++.- ..-...|...|.+.|++|+.+ ....
T Consensus 127 ~g~l~-~------~~-~~~~P--cTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~---~s~t- 192 (284)
T PRK14179 127 TGHLW-S------GR-PVMIP--CTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLT---HSRT- 192 (284)
T ss_pred HHHHh-C------CC-CCCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEE---CCCC-
Confidence 11121 1 21 12444 46778777776543 37889888766 666778999999999988665 2111
Q ss_pred CCCcHHHHHHcCCCCEEEEEChH
Q 022176 216 HHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 216 ~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
.... +...+.|+|+..-+.
T Consensus 193 -~~l~---~~~~~ADIVI~avg~ 211 (284)
T PRK14179 193 -RNLA---EVARKADILVVAIGR 211 (284)
T ss_pred -CCHH---HHHhhCCEEEEecCc
Confidence 1112 223567777665443
No 236
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=58.80 E-value=7.8 Score=22.82 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=21.3
Q ss_pred hHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCC
Q 022176 237 PSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGL 273 (301)
Q Consensus 237 ~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~ 273 (301)
|..+..|+.-++-.. +.-||++|++.|+++|+
T Consensus 1 pe~v~~~l~~lpi~~-----~~GIG~kt~~kL~~~GI 32 (32)
T PF11798_consen 1 PEDVPEFLWPLPIRK-----FWGIGKKTAKKLNKLGI 32 (32)
T ss_dssp CHHHHHHHHCSBGGG-----STTS-HHHHHHHHCTT-
T ss_pred ChHHHHHHhcCCHHh-----hCCccHHHHHHHHHccC
Confidence 355677777664322 34699999999999885
No 237
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=58.05 E-value=1.8e+02 Score=28.07 Aligned_cols=161 Identities=13% Similarity=0.060 Sum_probs=84.9
Q ss_pred cCCCCCCCeEEEeCCC-CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHH
Q 022176 44 ASASNSNPKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFL 118 (301)
Q Consensus 44 ~~~~l~g~~IlitR~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~ 118 (301)
.++|+.|.+|.+.-+- .+...|...|.+.|++|...-. .|....+....+|.. .+.. ||. |.......+
T Consensus 42 ~~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~---np~Stqd~vaaaL~~-~gi~--v~a~~~~~~~ey~~~~ 115 (425)
T PRK05476 42 AEKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASC---NPFSTQDDVAAALAA-AGIP--VFAWKGETLEEYWECI 115 (425)
T ss_pred ccCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeC---CCcccCHHHHHHHHH-CCce--EEecCCCCHHHHHHHH
Confidence 5699999999987665 3678899999999999875432 111111223333322 1222 222 222111111
Q ss_pred HHHH-HcCC------------------C--CceEEEEchhhHHHHHHHhh---cccCCCceeecCCC----------CcH
Q 022176 119 EAWK-EAGT------------------P--NVRIGVVGAGTASIFEEVIQ---SSKCSLDVAFSPSK----------ATG 164 (301)
Q Consensus 119 ~~l~-~~~~------------------~--~~~i~avG~~Ta~~L~~~~~---~~~~G~~~~~~p~~----------~~~ 164 (301)
+... ...+ + .-++.-+-+-|..-..++.+ .+..++++.-++.. .++
T Consensus 116 ~~~l~~~~p~iiiDdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~ 195 (425)
T PRK05476 116 ERALDGHGPNMILDDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTG 195 (425)
T ss_pred HHHhcCCCCCEEEecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHH
Confidence 1111 0000 0 12333333334333333211 13336665444431 245
Q ss_pred HHHHHHhccC---CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeee
Q 022176 165 KILASELPKN---GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 165 e~L~~~l~~~---~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
++.+..+.+. ...+++++++........+...|+..|++| .+|++.
T Consensus 196 ~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~V---iV~d~d 244 (425)
T PRK05476 196 ESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARV---IVTEVD 244 (425)
T ss_pred hhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEE---EEEcCC
Confidence 6666655433 236889999998888888999999999865 445443
No 238
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=58.02 E-value=1.6e+02 Score=28.80 Aligned_cols=95 Identities=12% Similarity=0.216 Sum_probs=53.2
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChH-------HHHHHHHhhhcccCCCceEEEECH
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~s-------av~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
.+.+.++|++.|..+ ++.+|+.. +...+.+...+.++|.|+|-||. .+..|++.+......+.+++++|.
T Consensus 269 A~~ia~gl~~~g~gv-~v~~~~v~--~~~~~~i~~~~~~ad~vilGspT~~~~~~p~~~~fl~~l~~~~l~gK~~~vFGS 345 (479)
T PRK05452 269 ADAIAQGIAEVDPRV-AVKIFNVA--RSDKNEILTNVFRSKGVLVGSSTMNNVMMPKIAGLLEEITGLRFRNKRASAFGS 345 (479)
T ss_pred HHHHHHHHHhhCCCc-eEEEEECC--CCCHHHHHhHHhhCCEEEEECCccCCcchHHHHHHHHHhhccCcCCCEEEEEEC
Confidence 345666777664322 34555532 22233444444578999999976 355566666544333555555543
Q ss_pred ---------HHHHHHHHcCCCe---eEecCCCCHHHH
Q 022176 263 ---------TTASAAKRLGLKN---VYYPTHPGLEGW 287 (301)
Q Consensus 263 ---------~Ta~al~~~G~~~---~~v~~~ps~e~l 287 (301)
...+.++..|++. +.+--.|+.+++
T Consensus 346 ygw~g~a~~~~~~~l~~~g~~~~~~l~~~~~P~ee~~ 382 (479)
T PRK05452 346 HGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDAL 382 (479)
T ss_pred CCcCcHHHHHHHHHHHHCCCEEeccEEEEecCCHHHH
Confidence 4556677788875 233345665543
No 239
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=58.01 E-value=1.8e+02 Score=27.96 Aligned_cols=223 Identities=12% Similarity=0.050 Sum_probs=107.3
Q ss_pred CCchHHHHHHHHhCCCcEEEeceeE------------eeeCCCchHHHHHHhcCCCccEEEEeCh--HHHHHHHHHHHHc
Q 022176 59 RGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSP--EAGSVFLEAWKEA 124 (301)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~d~~~l~~~l~~l~~~d~IiftS~--~av~~f~~~l~~~ 124 (301)
..+..++.+.|++.|+++..+|-+. ..+..+ ..+++ +.+..+.+.-|..++ .....+.+.+++.
T Consensus 167 ~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g-~~~~~-i~~~~~A~lniv~~~~~~~g~~~A~~L~e~ 244 (429)
T cd03466 167 PADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGG-TPISE-IKGMGGAKATIELGMFVDHGLSAGSYLEEE 244 (429)
T ss_pred hhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCC-CCHHH-HHhhccCcEEEEEccCccchHHHHHHHHHH
Confidence 3467899999999999998877432 111111 22332 335555555555553 2223344555432
Q ss_pred CCCCceEEE----Ec-hhhHHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhccC--CCCCCEEEEEcCCcChhHHHH
Q 022176 125 GTPNVRIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEE 195 (301)
Q Consensus 125 ~~~~~~i~a----vG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~ 195 (301)
. +++++. +| ..|.+.|++.. ...|..+ |+... -+.+.+.+.+. ...++|+++..+....-.+.+
T Consensus 245 ~--giP~~~~~~P~G~~~t~~~l~~l~--~~~g~~~---~~~i~~~~~~~~~~~~d~~~~l~gkrv~v~g~~~~~~~l~~ 317 (429)
T cd03466 245 F--GIPNYRLPLPIGLRATDEFMSLLS--KLTGKPI---PEKYTRERGRLLDAMIDAHKYNFGRKAAIYGEPDFVVAITR 317 (429)
T ss_pred H--CCCeeecCCCcChHHHHHHHHHHH--HHHCCCc---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHHHH
Confidence 1 333322 45 35666666541 1114322 22111 11122322221 125789988887666677899
Q ss_pred HHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcC--CCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCC
Q 022176 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL--SIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGL 273 (301)
Q Consensus 196 ~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~--~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~ 273 (301)
.|.+.|.++..+.+ .. ......+.+.+... ..+.+++..+ ....+.+.+++. +..++.-+..-...+++.|+
T Consensus 318 ~L~elG~~~~~v~~-~~-~~~~~~~~l~~~~~~~~~~~~v~~~~-d~~e~~~~l~~~---~~dliiG~s~~~~~a~~~~i 391 (429)
T cd03466 318 FVLENGMVPVLIAT-GS-ESKKLKEKLEEDLKEYVEKCVILDGA-DFFDIESYAKEL---KIDVLIGNSYGRRIAEKLGI 391 (429)
T ss_pred HHHHCCCEEEEEEe-CC-CChHHHHHHHHHHHhcCCceEEEeCC-CHHHHHHHHHhc---CCCEEEECchhHHHHHHcCC
Confidence 99999998733332 11 11111111111121 3455544432 223333333322 23444444455556666787
Q ss_pred CeeEe--c----------CCCCHHHHHHHHHHHHH
Q 022176 274 KNVYY--P----------THPGLEGWVDSILEALR 296 (301)
Q Consensus 274 ~~~~v--~----------~~ps~e~ll~ai~~~~~ 296 (301)
..+-+ | .....++.+..+.+..+
T Consensus 392 p~~~~~~P~~d~~~~~~~~~~Gy~G~~~l~~~i~n 426 (429)
T cd03466 392 PLIRIGFPIHDRLGGQRIRSLGYEGSIELVDRITN 426 (429)
T ss_pred CEEEecCCceeeeccCccCceechhHHHHHHHHHH
Confidence 64322 1 11355677766666554
No 240
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=57.56 E-value=1.6e+02 Score=27.34 Aligned_cols=208 Identities=8% Similarity=0.037 Sum_probs=110.8
Q ss_pred CCCCCCeEEEeCCC--CchHHH------HHHHHhCCCcE--EEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH
Q 022176 46 ASNSNPKVVVTRER--GKNGKL------IKALAKHRIDC--LELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (301)
Q Consensus 46 ~~l~g~~IlitR~~--~~~~~l------~~~L~~~G~~v--~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~ 115 (301)
.+.+|+.|++..+. +-++.+ ...|++.|+.- ..+|.+-.-.. | .. ..+- .+-+++
T Consensus 64 ~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQ-D-----r~---~~~~------e~isak 128 (330)
T PRK02812 64 ESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASARQITAVIPYYGYARA-D-----RK---TAGR------ESITAK 128 (330)
T ss_pred CCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHhCCceEEEEEeccccccc-c-----cc---cCCC------CCchHH
Confidence 46789999887663 224444 44566888863 33444433211 1 11 1111 133556
Q ss_pred HHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHH
Q 022176 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEE 195 (301)
Q Consensus 116 ~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~ 195 (301)
.+.+.+...|. -+++++-..+.+ ++.+| .+.++.. .....+++.+.+.. ..+++++..+.+.-.+.+
T Consensus 129 ~vA~lL~~~g~--d~vitvDlH~~~-~~~fF-----~ipv~nl---~~~~~l~~~i~~~~--~~~~vvVsPD~gg~~ra~ 195 (330)
T PRK02812 129 LVANLITKAGA--DRVLAMDLHSAQ-IQGYF-----DIPCDHV---YGSPVLLDYLASKN--LEDIVVVSPDVGGVARAR 195 (330)
T ss_pred HHHHHHHhcCC--CEEEEEECCchH-HcCcc-----CCCceee---eChHHHHHHHHhcC--CCCeEEEEECCccHHHHH
Confidence 66776766554 367788888644 34442 4443222 23455666765432 246788888888777666
Q ss_pred HHHhC--CCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEE----EEChHHHHHHHHhhhcccCCCceEEEE----CHHHH
Q 022176 196 GLSNR--GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA----VASPSAVRSWVNLISDTEQWSNSVACI----GETTA 265 (301)
Q Consensus 196 ~L~~~--G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~----ftS~sav~~~~~~l~~~~~~~~~i~aI----G~~Ta 265 (301)
.+.+. |..+..+.-.+........-........-++|+ ++++.++....+.+++.+...+.+++. ++...
T Consensus 196 ~~A~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~ 275 (330)
T PRK02812 196 AFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVFSPPAI 275 (330)
T ss_pred HHHHHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEEEcccCChHHH
Confidence 66654 344433333221110000000001122333443 588999999999998766445555553 44455
Q ss_pred HHHHHcCCCeeEecCC
Q 022176 266 SAAKRLGLKNVYYPTH 281 (301)
Q Consensus 266 ~al~~~G~~~~~v~~~ 281 (301)
+.+++.++..+++.+.
T Consensus 276 ~~l~~~~id~iv~tnt 291 (330)
T PRK02812 276 ERLSSGLFEEVIVTNT 291 (330)
T ss_pred HHHhhCCCCEEEEeCC
Confidence 5666667777665544
No 241
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=57.47 E-value=1.6e+02 Score=27.05 Aligned_cols=210 Identities=9% Similarity=0.027 Sum_probs=113.5
Q ss_pred CCCCCCeEEEeCCCC--chHHH------HHHHHhCCCcE--EEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH
Q 022176 46 ASNSNPKVVVTRERG--KNGKL------IKALAKHRIDC--LELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (301)
Q Consensus 46 ~~l~g~~IlitR~~~--~~~~l------~~~L~~~G~~v--~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~ 115 (301)
.+++|+.|++..+.. .++.+ ...+++.|+.- ..+|.+-.-.. | ... .+- .+-+++
T Consensus 34 ~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQ-D-----r~~---~~~------e~isak 98 (302)
T PLN02369 34 ESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYFGYARA-D-----RKT---QGR------ESIAAK 98 (302)
T ss_pred CCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeeccccccc-c-----ccc---CCC------CCchHH
Confidence 467889888876532 23443 45667888863 33444433211 1 111 111 233556
Q ss_pred HHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHH
Q 022176 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEE 195 (301)
Q Consensus 116 ~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~ 195 (301)
.+.+.+...|. -+++++-..+.+ ++.+| .+.++-. .....+++.+.+.......++++..+.+.-.+.+
T Consensus 99 ~va~lL~~~g~--d~vi~vDlHs~~-i~~~F-----~ip~~~l---~~~~~~~~~i~~~~~~~~~~vvVspd~gg~~~a~ 167 (302)
T PLN02369 99 LVANLITEAGA--DRVLACDLHSGQ-SMGYF-----DIPVDHV---YGQPVILDYLASKTISSPDLVVVSPDVGGVARAR 167 (302)
T ss_pred HHHHHHHhcCC--CEEEEEECCchH-Hhhcc-----CCceecc---cchHHHHHHHHHhCCCCCceEEEEECcChHHHHH
Confidence 66666666554 467777777654 34443 4433211 2344566666543222356788888888777777
Q ss_pred HHHh-C-CCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEE----EEChHHHHHHHHhhhcccCCCceEEE----ECHHHH
Q 022176 196 GLSN-R-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA----VASPSAVRSWVNLISDTEQWSNSVAC----IGETTA 265 (301)
Q Consensus 196 ~L~~-~-G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~----ftS~sav~~~~~~l~~~~~~~~~i~a----IG~~Ta 265 (301)
.+.+ . ++.+..+..|+........-.+......-++|+ ++++.++....+.+++.+...+.+++ ..+...
T Consensus 168 ~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~a~ 247 (302)
T PLN02369 168 AFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAI 247 (302)
T ss_pred HHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCHHHH
Confidence 7653 2 466666666653221110000000122233443 58888888888888876644455555 334455
Q ss_pred HHHHHcCCCeeEecCC
Q 022176 266 SAAKRLGLKNVYYPTH 281 (301)
Q Consensus 266 ~al~~~G~~~~~v~~~ 281 (301)
+.+.+.++..+++.+.
T Consensus 248 ~~l~~~~~~~iv~t~t 263 (302)
T PLN02369 248 ERLSSGLFQEVIVTNT 263 (302)
T ss_pred HHHHhCCCCEEEEeCC
Confidence 5666667776655443
No 242
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=57.47 E-value=87 Score=26.69 Aligned_cols=66 Identities=24% Similarity=0.255 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCc-----ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHh
Q 022176 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNL 246 (301)
Q Consensus 177 ~~~~vLi~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~ 246 (301)
.+.+|+|+.... ..+...+.+++.|+++..+.+.+. ...+.+.+.+...|+|+|+-.++.+..-.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~----~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l 98 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT----ANDPDVVARLLEADGIFVGGGNQLRLLSVL 98 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC----CCCHHHHHHHhhCCEEEEcCCcHHHHHHHH
Confidence 457888875554 245678889999999888877654 122334555778999999998887765443
No 243
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=57.16 E-value=17 Score=28.68 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=35.1
Q ss_pred chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc-CCCccEEEEeChHHH
Q 022176 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIITSPEAG 114 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~-l~~~d~IiftS~~av 114 (301)
....+.+.|++.|+++....++. +|.+.+.+.+.+ ...+|.||.|-..++
T Consensus 19 ~~~~l~~~l~~~G~~~~~~~~v~----Dd~~~I~~~l~~~~~~~dliittGG~g~ 69 (135)
T smart00852 19 NGPALAELLTELGIEVTRYVIVP----DDKEAIKEALREALERADLVITTGGTGP 69 (135)
T ss_pred cHHHHHHHHHHCCCeEEEEEEeC----CCHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 34678899999999988766553 455666666644 356898887776663
No 244
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=56.69 E-value=77 Score=27.80 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=46.7
Q ss_pred chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH------------HH-HHHHHHHcCCC
Q 022176 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG------------SV-FLEAWKEAGTP 127 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av------------~~-f~~~l~~~~~~ 127 (301)
-..++...|++.|+++..++.-+... . . ..+.+||.||+.-.... +. +.+.+.+....
T Consensus 11 ~~~~~~~al~~aG~~v~~v~~~~~~~--~------~-~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~ 81 (238)
T cd01740 11 CDRDMAYAFELAGFEAEDVWHNDLLA--G------R-KDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAER 81 (238)
T ss_pred CHHHHHHHHHHcCCCEEEEeccCCcc--c------c-CCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhC
Confidence 34578899999999999877654211 1 0 13467999999876321 00 22333332235
Q ss_pred CceEEEEchhhHHHHHHH
Q 022176 128 NVRIGVVGAGTASIFEEV 145 (301)
Q Consensus 128 ~~~i~avG~~Ta~~L~~~ 145 (301)
+.++++|..+. +.|-+.
T Consensus 82 g~pvlGIC~G~-QlL~~~ 98 (238)
T cd01740 82 GGLVLGICNGF-QILVEL 98 (238)
T ss_pred CCeEEEECcHH-HHHHHc
Confidence 78898888654 777776
No 245
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=56.43 E-value=90 Score=25.92 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=47.4
Q ss_pred EEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH-H--------HHHHHHHHH
Q 022176 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-G--------SVFLEAWKE 123 (301)
Q Consensus 53 IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a-v--------~~f~~~l~~ 123 (301)
|+.+++......+.+.|++.|...+.+.+++...... ...+..+|.||++-... + +.+.+.+..
T Consensus 4 il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-------~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~ 76 (188)
T cd01741 4 ILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGEL-------LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQ 76 (188)
T ss_pred EEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCC-------CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHH
Confidence 3445554456889999999995222222333222111 12467899999997643 2 112222222
Q ss_pred cCCCCceEEEEchhhHHHHHHHhhcccCCCce
Q 022176 124 AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (301)
Q Consensus 124 ~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~ 155 (301)
....+.+++.|.-+- +.|-..+ |-++
T Consensus 77 ~~~~~~pilgiC~G~-q~l~~~l-----GG~v 102 (188)
T cd01741 77 ALAAGKPVLGICLGH-QLLARAL-----GGKV 102 (188)
T ss_pred HHHCCCCEEEECccH-HHHHHHh-----CCEE
Confidence 112357787776665 4444333 6655
No 246
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=56.37 E-value=62 Score=29.40 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-HHHHHHHHHHHcCCCC
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTPN 128 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-av~~f~~~l~~~~~~~ 128 (301)
..+.+.++++|+++.....+... ..|....-..+.. .+.|.|++.+.. ....|++.+.+.+++.
T Consensus 151 ~~~~~~~~~~G~~v~~~~~~~~~-~~d~~~~~~~i~~-~~pdaV~~~~~~~~a~~~~~~~~~~G~~~ 215 (341)
T cd06341 151 ALLARSLAAAGVSVAGIVVITAT-APDPTPQAQQAAA-AGADAIITVLDAAVCASVLKAVRAAGLTP 215 (341)
T ss_pred HHHHHHHHHcCCccccccccCCC-CCCHHHHHHHHHh-cCCCEEEEecChHHHHHHHHHHHHcCCCC
Confidence 44667788888887654443322 2333222223322 468888888766 5566777787777643
No 247
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=56.20 E-value=32 Score=29.17 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=15.0
Q ss_pred chHHHHHHHHhCCCcEEEe
Q 022176 61 KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~ 79 (301)
.+..+++.+..+|++|..+
T Consensus 31 ~G~~lA~~~~~~Ga~V~li 49 (185)
T PF04127_consen 31 MGAALAEEAARRGAEVTLI 49 (185)
T ss_dssp HHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 4578999999999998865
No 248
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=55.93 E-value=98 Score=24.30 Aligned_cols=70 Identities=14% Similarity=0.268 Sum_probs=34.0
Q ss_pred CCCEEEEEChHHH-------HHHHHhhhcccCCCceEEEECHHHHHHHHHcCC---C-eeEecCCCCHHHHHHHHHHHHH
Q 022176 228 SIPVVAVASPSAV-------RSWVNLISDTEQWSNSVACIGETTASAAKRLGL---K-NVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 228 ~~d~I~ftS~sav-------~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~---~-~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
.+|++++.+.... ..+.+.+++.......+++|+..+. .|.+.|+ . -++..+.+ .+...+.+.+.++
T Consensus 62 ~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~-~La~aGll~~~~gv~~~~~~-~~~~~~~~~~~~~ 139 (142)
T cd03132 62 LFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSD-LLEAAGIPLEDPGVVTADDV-KDVFTDRFIDALA 139 (142)
T ss_pred hcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHH-HHHHcCCCCCCCcEEEecCc-chHHHHHHHHHHH
Confidence 5899999876432 1233333332122455555554443 3444565 1 23444433 3334566666666
Q ss_pred ccC
Q 022176 297 EHG 299 (301)
Q Consensus 297 ~~~ 299 (301)
.|+
T Consensus 140 ~~r 142 (142)
T cd03132 140 LHR 142 (142)
T ss_pred hcC
Confidence 554
No 249
>PRK09739 hypothetical protein; Provisional
Probab=55.69 E-value=31 Score=29.25 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCC----------------CchHHHHHHhcCCCccEEEEeChH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGP----------------DTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~----------------d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
..+.+.+++.|.++..+-+++....| ..+.+....+++...|.|||.+|.
T Consensus 24 ~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~ 89 (199)
T PRK09739 24 EAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPL 89 (199)
T ss_pred HHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECch
Confidence 44555667788888888776542111 012344555567788888888874
No 250
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=55.36 E-value=49 Score=31.55 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=28.1
Q ss_pred CCCCCCeEEEeCCC-----------------CchHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRER-----------------GKNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~-----------------~~~~~l~~~L~~~G~~v~~~ 79 (301)
.++.|++||||-.. ..+..+++.|..+|++|..+
T Consensus 181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~ 231 (390)
T TIGR00521 181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLI 231 (390)
T ss_pred cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEe
Confidence 46899999999763 25689999999999998764
No 251
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=55.26 E-value=45 Score=26.91 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=51.4
Q ss_pred CCCCCCeEEEe-CCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc
Q 022176 46 ASNSNPKVVVT-RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (301)
Q Consensus 46 ~~l~g~~Ilit-R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~ 124 (301)
.++.|++|+|. |...-+..++..|.+.|+++..+.-.. . .+++. ....|.||-..... ..+-..|-+
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t----~---~l~~~---v~~ADIVvsAtg~~-~~i~~~~ik- 91 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT----I---QLQSK---VHDADVVVVGSPKP-EKVPTEWIK- 91 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC----c---CHHHH---HhhCCEEEEecCCC-CccCHHHcC-
Confidence 58899998874 777788999999999999988765211 1 23333 36688887766665 433333322
Q ss_pred CCCCceEEEEchh
Q 022176 125 GTPNVRIGVVGAG 137 (301)
Q Consensus 125 ~~~~~~i~avG~~ 137 (301)
++.-+.-+|..
T Consensus 92 --pGa~Vidvg~~ 102 (140)
T cd05212 92 --PGATVINCSPT 102 (140)
T ss_pred --CCCEEEEcCCC
Confidence 45566666654
No 252
>PRK08605 D-lactate dehydrogenase; Validated
Probab=55.18 E-value=1.6e+02 Score=27.23 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCcChhHHHHHH-HhCCCeeEEEeeeeeeeCCCCc------HHHHHHcCCCCEEEEEChHH
Q 022176 177 KKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNTYTTEPVHHVD------QTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L-~~~G~~v~~~~vY~~~~~~~~~------~~~~~~~~~~d~I~ftS~sa 239 (301)
.+++|.++....-...++..| +..|.+|. .|+..+..... ..+.+.+.+.|+|++.-|.+
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~---~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t 211 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYGSDVV---AYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPAT 211 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEEE---EECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCC
Confidence 577898988877778899998 55676554 45543211100 01122246789999886654
No 253
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=55.17 E-value=1e+02 Score=29.75 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=25.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCee
Q 022176 165 KILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (301)
Q Consensus 165 e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v 204 (301)
+.|...+.... .+.-++|.......+.+.+.|.+.|..+
T Consensus 231 ~~l~~ll~~~~-~~~~lVF~~t~~~~~~l~~~L~~~~~~v 269 (460)
T PRK11776 231 PALQRLLLHHQ-PESCVVFCNTKKECQEVADALNAQGFSA 269 (460)
T ss_pred HHHHHHHHhcC-CCceEEEECCHHHHHHHHHHHHhCCCcE
Confidence 34444443322 3345667777777889999999998765
No 254
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=55.13 E-value=1e+02 Score=29.33 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=73.0
Q ss_pred cHHHHHHHhccCCC--CCCEEEEEcCC-c-----ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEE
Q 022176 163 TGKILASELPKNGK--KKCTVLYPASA-K-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAV 234 (301)
Q Consensus 163 ~~e~L~~~l~~~~~--~~~~vLi~rg~-~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~f 234 (301)
+...+++.-.++.. ..++|.++-.. - -...+.+.|.+.|..|..+.+-.. +.+++.+.+.+.+.+++
T Consensus 229 ~~~~i~~~Y~~W~~~~~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~-----~~~eI~~~i~~a~~~vv 303 (388)
T COG0426 229 NPKEIVEAYRDWAEGQPKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA-----DPSEIVEEILDAKGLVV 303 (388)
T ss_pred CHHHHHHHHHHHHccCCcceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC-----CHHHHHHHHhhcceEEE
Confidence 34555555444332 22256555442 2 245788999999998765555332 34566666788999999
Q ss_pred EChH-------HHHHHHHhhhcccCCCceEEEEC---------HHHHHHHHHcCCCee----EecCCCCHHHH
Q 022176 235 ASPS-------AVRSWVNLISDTEQWSNSVACIG---------ETTASAAKRLGLKNV----YYPTHPGLEGW 287 (301)
Q Consensus 235 tS~s-------av~~~~~~l~~~~~~~~~i~aIG---------~~Ta~al~~~G~~~~----~v~~~ps~e~l 287 (301)
-||. .+..++..+......+..+.+.| +...+.++++|++.. -+--.|+.+.+
T Consensus 304 GsPT~~~~~~p~i~~~l~~v~~~~~~~k~~~vfgS~GW~g~av~~i~~~l~~~g~~~~~~~i~vk~~P~~~~l 376 (388)
T COG0426 304 GSPTINGGAHPPIQTALGYVLALAPKNKLAGVFGSYGWSGEAVDLIEEKLKDLGFEFGFDGIEVKFRPTEEDL 376 (388)
T ss_pred ecCcccCCCCchHHHHHHHHHhccCcCceEEEEeccCCCCcchHHHHHHHHhcCcEEeccceEEEecCCHHHH
Confidence 9996 36666665554333344455544 577888899888742 23345666654
No 255
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=55.07 E-value=92 Score=26.98 Aligned_cols=80 Identities=19% Similarity=0.070 Sum_probs=48.5
Q ss_pred CeEEEeCCCCch--HHHHHHHH-hCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH------------H
Q 022176 51 PKVVVTRERGKN--GKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG------------S 115 (301)
Q Consensus 51 ~~IlitR~~~~~--~~l~~~L~-~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av------------~ 115 (301)
++|+|.+-.+.+ .++...|+ ..|+++..++.- + ..+..+|.||+.-.... .
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~------~--------~~l~~~D~lvipGG~~~~d~l~~~~~~~~~ 66 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHK------E--------TDLDGVDAVVLPGGFSYGDYLRCGAIAAFS 66 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecC------c--------CCCCCCCEEEECCCCchhhhhccchhhhch
Confidence 356665554444 45788998 889988766531 1 13567899998875321 1
Q ss_pred HHHHHHHHcCCCCceEEEEchhhHHHHHHH
Q 022176 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (301)
Q Consensus 116 ~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~ 145 (301)
.+.+.+.+....+.++++|..+. +.|-+.
T Consensus 67 ~~~~~l~~~~~~g~~ilgIC~G~-qlLa~~ 95 (219)
T PRK03619 67 PIMKAVKEFAEKGKPVLGICNGF-QILTEA 95 (219)
T ss_pred HHHHHHHHHHHCCCEEEEECHHH-HHHHHc
Confidence 12222222222478899998876 677766
No 256
>PRK05568 flavodoxin; Provisional
Probab=55.07 E-value=32 Score=27.16 Aligned_cols=72 Identities=11% Similarity=0.172 Sum_probs=39.4
Q ss_pred EEEeCCCCchHHHHH----HHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH---------HHHHHHH
Q 022176 53 VVVTRERGKNGKLIK----ALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFLE 119 (301)
Q Consensus 53 IlitR~~~~~~~l~~----~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~---------av~~f~~ 119 (301)
|+.....+..+.+++ .+++.|.++..+++-+ . +. .++.++|.|+|-||. .+..|++
T Consensus 6 IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~---~-~~-------~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~ 74 (142)
T PRK05568 6 IIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSE---A-SV-------DDVKGADVVALGSPAMGDEVLEEGEMEPFVE 74 (142)
T ss_pred EEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCC---C-CH-------HHHHhCCEEEEECCccCcccccchhHHHHHH
Confidence 344444444444444 4445677665443322 1 11 134689999999984 3556666
Q ss_pred HHHHcCCCCceEEEEch
Q 022176 120 AWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 120 ~l~~~~~~~~~i~avG~ 136 (301)
.+... +.+.+++++|.
T Consensus 75 ~~~~~-~~~k~~~~f~t 90 (142)
T PRK05568 75 SISSL-VKGKKLVLFGS 90 (142)
T ss_pred Hhhhh-hCCCEEEEEEc
Confidence 55332 34667777765
No 257
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=54.93 E-value=1.6e+02 Score=26.38 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=44.1
Q ss_pred CCeE-EEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH
Q 022176 50 NPKV-VVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (301)
Q Consensus 50 g~~I-litR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~ 123 (301)
|..| .+++..+ ..+.+.+++.|+++..+|-..- ...|.+++.+.+++. +.|+||+++.+.-..+.+.++.
T Consensus 31 g~~v~f~~~~~~--~~~~~~i~~~g~~v~~~~~~~~-~~~d~~~~~~~l~~~-~~d~vV~D~y~~~~~~~~~~k~ 101 (279)
T TIGR03590 31 GAEVAFACKPLP--GDLIDLLLSAGFPVYELPDESS-RYDDALELINLLEEE-KFDILIVDHYGLDADWEKLIKE 101 (279)
T ss_pred CCEEEEEeCCCC--HHHHHHHHHcCCeEEEecCCCc-hhhhHHHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHH
Confidence 4454 4566543 4567889999998887653321 112344566666443 7899999998655556666654
No 258
>PRK06849 hypothetical protein; Provisional
Probab=54.91 E-value=1.7e+02 Score=27.39 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=50.0
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeee--------------eee-CCCCcH----HHHHH--cCCCCEEEEE
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYT--------------TEP-VHHVDQ----TVLKQ--ALSIPVVAVA 235 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~--------------~~~-~~~~~~----~~~~~--~~~~d~I~ft 235 (301)
.++||++.+... .-.+...|.+.|++|.-+..-. ..+ +..+.+ .+.+. ..++|.|+-+
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP~ 83 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIPT 83 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 456777766653 3457777777777665443221 121 111221 12111 1468999888
Q ss_pred ChHHHHHHHHhhhcccCCCceEEEECHHHH----------HHHHHcCCCe
Q 022176 236 SPSAVRSWVNLISDTEQWSNSVACIGETTA----------SAAKRLGLKN 275 (301)
Q Consensus 236 S~sav~~~~~~l~~~~~~~~~i~aIG~~Ta----------~al~~~G~~~ 275 (301)
+... .++....+.-...+.+...++.+. +.+++.|+.+
T Consensus 84 ~e~~--~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~Gipv 131 (389)
T PRK06849 84 CEEV--FYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSV 131 (389)
T ss_pred ChHH--HhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCC
Confidence 8754 333332221112455666666554 4467788864
No 259
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=54.89 E-value=2e+02 Score=27.59 Aligned_cols=196 Identities=16% Similarity=0.095 Sum_probs=96.4
Q ss_pred CchHHHHHHHHhCCCcEE-EeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceE-EEEc-h
Q 022176 60 GKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRI-GVVG-A 136 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~-~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i-~avG-~ 136 (301)
....++...|++.|+++. .+|- .+..+ +........++..++.+. ...+++++.+.+-+.. +-+| .
T Consensus 178 ~d~~el~~lL~~~Gi~v~~~lp~------~~~~d----~~~~~~~~~~~~~~~~~~-~~A~~L~~~GiP~~~~~~P~G~~ 246 (427)
T PRK02842 178 VVEDQLTLEFKKLGIGVVGFLPA------RRFTE----LPAIGPGTVVALAQPFLS-DTARALRERGAKVLTAPFPLGPE 246 (427)
T ss_pred chHHHHHHHHHHcCCeeEEEeCC------ccHHH----HhhcCcCcEEEEeCHHHH-HHHHHHHHcCCccccCCCCcChH
Confidence 344789999999999985 4442 12222 223444555666777655 3566675544332222 2255 3
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCC--cHHHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHh-CCCeeEEEeeee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSN-RGFEVVRLNTYT 211 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~--~~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~-~G~~v~~~~vY~ 211 (301)
.|.+.|++.. ...|......-+.. .-..+.+.+... ...|+|+++..+....-.+...|.+ .|.++..+.+-.
T Consensus 247 ~T~~~L~~la--~~~g~~~~~~~~~~~~er~~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~eelGm~~v~v~t~~ 324 (427)
T PRK02842 247 GTRAWLEAAA--AAFGIDPDGLEEREAPAWERARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRECGMELVEVGTPY 324 (427)
T ss_pred HHHHHHHHHH--HHhCcCHhHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHhCCCEEEEeCCCC
Confidence 5666666652 11143321000000 011222333322 1268899888766556679999998 999885544311
Q ss_pred eeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe
Q 022176 212 TEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 275 (301)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~ 275 (301)
......+..++.+.. ++.+...+. ...+.+.+++. ...++.-|...+--+.+.|+..
T Consensus 325 --~~~~~~~~~~~~l~~-~~~v~~~~D-~~~l~~~i~~~---~pDllig~~~~~~pl~r~GfP~ 381 (427)
T PRK02842 325 --LNRRFLAAELALLPD-GVRIVEGQD-VERQLDRIRAL---RPDLVVCGLGLANPLEAEGITT 381 (427)
T ss_pred --CCHHHHHHHHHhccC-CCEEEECCC-HHHHHHHHHHc---CCCEEEccCccCCchhhcCCce
Confidence 111111222233322 444444322 22233333332 2334434445556677888875
No 260
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=54.73 E-value=1.7e+02 Score=26.70 Aligned_cols=183 Identities=11% Similarity=0.047 Sum_probs=88.2
Q ss_pred hcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHH--HhhcccCCCceeecC---CCCcHHHHHHHhc
Q 022176 98 NADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE--VIQSSKCSLDVAFSP---SKATGKILASELP 172 (301)
Q Consensus 98 ~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~--~~~~~~~G~~~~~~p---~~~~~e~L~~~l~ 172 (301)
..+...|.||+.|....+.+.+.+... ..+.++-.|-.+...... . ........++. ..-..+.+++.+.
T Consensus 153 ~~~~~~d~ii~~s~~~~~~l~~~~~~~--~~v~~ip~g~~~~~~~~~~~~---~~~~~~i~~vgrl~~~K~~~~li~a~~ 227 (372)
T cd04949 153 ENLDKVDGVIVATEQQKQDLQKQFGNY--NPIYTIPVGSIDPLKLPAQFK---QRKPHKIITVARLAPEKQLDQLIKAFA 227 (372)
T ss_pred hChhhCCEEEEccHHHHHHHHHHhCCC--CceEEEcccccChhhcccchh---hcCCCeEEEEEccCcccCHHHHHHHHH
Confidence 346788999999998888776544321 122222223322221110 0 00011222221 1123445656654
Q ss_pred cCC--CCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH--HHHHHHhhh
Q 022176 173 KNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA--VRSWVNLIS 248 (301)
Q Consensus 173 ~~~--~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sa--v~~~~~~l~ 248 (301)
... ..+-++.+.+.......+.+...+.+..- .+.... ..+ ++.+.+...|+++++|... --.+++.+.
T Consensus 228 ~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~-~v~~~g--~~~----~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma 300 (372)
T cd04949 228 KVVKQVPDATLDIYGYGDEEEKLKELIEELGLED-YVFLKG--YTR----DLDEVYQKAQLSLLTSQSEGFGLSLMEALS 300 (372)
T ss_pred HHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcc-eEEEcC--CCC----CHHHHHhhhhEEEecccccccChHHHHHHh
Confidence 432 13456666655555555655555555321 111111 111 1233356789999999642 112233322
Q ss_pred cccCCCceEEEEC--HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 249 DTEQWSNSVACIG--ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 249 ~~~~~~~~i~aIG--~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
.++++++.. ....+.+.. |..-.+ .+..+.++|.++|.+.+..+
T Consensus 301 ----~G~PvI~~~~~~g~~~~v~~-~~~G~l-v~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 301 ----HGLPVISYDVNYGPSEIIED-GENGYL-VPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred ----CCCCEEEecCCCCcHHHccc-CCCceE-eCCCcHHHHHHHHHHHHcCH
Confidence 256777642 123344433 322223 34468999999999887653
No 261
>PRK10307 putative glycosyl transferase; Provisional
Probab=54.48 E-value=1.9e+02 Score=27.10 Aligned_cols=175 Identities=12% Similarity=0.122 Sum_probs=89.9
Q ss_pred CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchh--h----------HHHHHHHhhcccCCCc-----eeecCC--
Q 022176 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG--T----------ASIFEEVIQSSKCSLD-----VAFSPS-- 160 (301)
Q Consensus 100 l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~--T----------a~~L~~~~~~~~~G~~-----~~~~p~-- 160 (301)
+...|.|+.+|....+.+.+ .+.+..++.+|... + ...+++.+ |+. ..++..
T Consensus 169 ~~~ad~ii~~S~~~~~~~~~----~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~G~l~ 239 (412)
T PRK10307 169 LRRFDNVSTISRSMMNKARE----KGVAAEKVIFFPNWSEVARFQPVADADVDALRAQL-----GLPDGKKIVLYSGNIG 239 (412)
T ss_pred HhhCCEEEecCHHHHHHHHH----cCCCcccEEEECCCcCHhhcCCCCccchHHHHHHc-----CCCCCCEEEEEcCccc
Confidence 45789999999988886543 23334455554322 1 11233221 332 222221
Q ss_pred -CCcHHHHHHHhccCCC-CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChH
Q 022176 161 -KATGKILASELPKNGK-KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 161 -~~~~e~L~~~l~~~~~-~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
..+-+.|++.+..... .+-++++++.....+.+.+..++.|.. .+...-.++ .+++...+...|+.+++|..
T Consensus 240 ~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--~v~f~G~~~----~~~~~~~~~~aDi~v~ps~~ 313 (412)
T PRK10307 240 EKQGLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLP--NVHFLPLQP----YDRLPALLKMADCHLLPQKA 313 (412)
T ss_pred cccCHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCC--ceEEeCCCC----HHHHHHHHHhcCEeEEeecc
Confidence 2345667777654322 234666666544556677777766653 222221111 12333334678888887754
Q ss_pred HHHH------HHHhhhcccCCCceEEEE---CHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 239 AVRS------WVNLISDTEQWSNSVACI---GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 239 av~~------~~~~l~~~~~~~~~i~aI---G~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
.... +++.+. -++++++. |....+.+...|+ + .+..+.+++.++|.+.+.+
T Consensus 314 e~~~~~~p~kl~eama----~G~PVi~s~~~g~~~~~~i~~~G~---~-~~~~d~~~la~~i~~l~~~ 373 (412)
T PRK10307 314 GAADLVLPSKLTNMLA----SGRNVVATAEPGTELGQLVEGIGV---C-VEPESVEALVAAIAALARQ 373 (412)
T ss_pred CcccccCcHHHHHHHH----cCCCEEEEeCCCchHHHHHhCCcE---E-eCCCCHHHHHHHHHHHHhC
Confidence 3210 122221 25677664 2234455553332 2 2445789999999887654
No 262
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=54.45 E-value=30 Score=26.65 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=36.0
Q ss_pred CeEEEeCCCCch------HHHHHHHHhCCCcEEEeceeEeeeCC-CchHHHHHHhcCCCccEEEEeChHHHHHHHH
Q 022176 51 PKVVVTRERGKN------GKLIKALAKHRIDCLELPLIQHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (301)
Q Consensus 51 ~~IlitR~~~~~------~~l~~~L~~~G~~v~~~P~~~~~~~~-d~~~l~~~l~~l~~~d~IiftS~~av~~f~~ 119 (301)
++|+..||..+. ..+.+..+++|.+.+++|+..-.... +...+.+.+..+.+.=++-.-|.+=+..+..
T Consensus 29 ktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 29 KTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSGTRASALWA 104 (110)
T ss_dssp -EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHHHH
T ss_pred cEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCChhHHHHHH
Confidence 578889987432 34678889999999999998644332 2345556665565554555555554444443
No 263
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=54.35 E-value=46 Score=30.05 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=56.5
Q ss_pred eCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc---C-CCccEEEEeChHHHHHHHHHHHHcCCCCceE
Q 022176 56 TRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---D-TIFDWIIITSPEAGSVFLEAWKEAGTPNVRI 131 (301)
Q Consensus 56 tR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~---l-~~~d~IiftS~~av~~f~~~l~~~~~~~~~i 131 (301)
.++-+.+.+..+.|+++|..++.+---.... .+.+.+.|.. . ..+|.| +||..+...++... .+..++
T Consensus 23 ~~~ipga~e~l~~L~~~g~~~iflTNn~~~s---~~~~~~~L~~~~~~~~~~~~i-~TS~~at~~~l~~~----~~~~kv 94 (269)
T COG0647 23 NEAIPGAAEALKRLKAAGKPVIFLTNNSTRS---REVVAARLSSLGGVDVTPDDI-VTSGDATADYLAKQ----KPGKKV 94 (269)
T ss_pred CccCchHHHHHHHHHHcCCeEEEEeCCCCCC---HHHHHHHHHhhcCCCCCHHHe-ecHHHHHHHHHHhh----CCCCEE
Confidence 4555788999999999999888664433332 2224444434 2 345554 79999988776532 134899
Q ss_pred EEEchhhH-HHHHHHhhcccCCCce
Q 022176 132 GVVGAGTA-SIFEEVIQSSKCSLDV 155 (301)
Q Consensus 132 ~avG~~Ta-~~L~~~~~~~~~G~~~ 155 (301)
|+||..-- +.|+.+ |+..
T Consensus 95 ~viG~~~l~~~l~~~------G~~~ 113 (269)
T COG0647 95 YVIGEEGLKEELEGA------GFEL 113 (269)
T ss_pred EEECCcchHHHHHhC------CcEE
Confidence 99998765 666666 8755
No 264
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=54.34 E-value=1.2e+02 Score=27.59 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=58.3
Q ss_pred CCEEEEEcCCcChhHHHHHHHhCCCeeEEEee----eeeeeCCCCcHHHHHHcCCCCEEEEEChHH--------------
Q 022176 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNT----YTTEPVHHVDQTVLKQALSIPVVAVASPSA-------------- 239 (301)
Q Consensus 178 ~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~v----Y~~~~~~~~~~~~~~~~~~~d~I~ftS~sa-------------- 239 (301)
+.++.++.|+..--++.+.|.+.|++|...-. |+........ ...+.+.+.|+|++.-|-.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~-~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSS-SLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeec-cHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 57899999999989999999999998865211 2111000100 0111246789998774421
Q ss_pred ---HHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCee
Q 022176 240 ---VRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 276 (301)
Q Consensus 240 ---v~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~ 276 (301)
=+.+++.+++.. .+.+-++.+...+.+++.|+...
T Consensus 81 ~~~~~~~l~~l~~~~--~v~~G~~~~~~~~~~~~~gi~~~ 118 (296)
T PRK08306 81 LVLTEELLELTPEHC--TIFSGIANPYLKELAKETNRKLV 118 (296)
T ss_pred CcchHHHHHhcCCCC--EEEEecCCHHHHHHHHHCCCeEE
Confidence 134555555421 12233455788888899999864
No 265
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.01 E-value=62 Score=28.18 Aligned_cols=70 Identities=19% Similarity=0.055 Sum_probs=45.0
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCC--ccEEE--EeChHHHHHHH
Q 022176 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI--FDWII--ITSPEAGSVFL 118 (301)
Q Consensus 46 ~~l~g~~IlitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~--~d~Ii--ftS~~av~~f~ 118 (301)
..+.|++++||-.. +=+..+++.|.+.|++|+..- +- +...+.+.++.. ...+- ++++.+++.++
T Consensus 3 ~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~--r~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 3 GILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTY--QN------DRMKKSLQKLVDEEDLLVECDVASDESIERAF 74 (252)
T ss_pred cccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEec--Cc------hHHHHHHHhhccCceeEEeCCCCCHHHHHHHH
Confidence 45789999999875 567899999999999987531 11 112222222211 11111 58889999888
Q ss_pred HHHHH
Q 022176 119 EAWKE 123 (301)
Q Consensus 119 ~~l~~ 123 (301)
+.+.+
T Consensus 75 ~~~~~ 79 (252)
T PRK06079 75 ATIKE 79 (252)
T ss_pred HHHHH
Confidence 87654
No 266
>PRK07825 short chain dehydrogenase; Provisional
Probab=53.96 E-value=1.5e+02 Score=25.86 Aligned_cols=71 Identities=15% Similarity=-0.008 Sum_probs=43.0
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHHHHH
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWKE 123 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii--ftS~~av~~f~~~l~~ 123 (301)
.+.|++||||-..+ =+..+++.|.++|+++...- . +.+.++.....+....++. ++++.+++.+++.+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~-----r--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGD-----L--DEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEA 74 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEE-----C--CHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHH
Confidence 35688999997654 45688888999999865321 1 1223332222222233332 4788888888877755
Q ss_pred c
Q 022176 124 A 124 (301)
Q Consensus 124 ~ 124 (301)
.
T Consensus 75 ~ 75 (273)
T PRK07825 75 D 75 (273)
T ss_pred H
Confidence 3
No 267
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=53.77 E-value=23 Score=27.49 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=32.4
Q ss_pred EECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 259 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 259 aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
.||+...+.|.+.|++++......+.++.++.+.+.+..
T Consensus 71 ~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~ 109 (119)
T TIGR02663 71 AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKG 109 (119)
T ss_pred hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcC
Confidence 599999999999999986555556899999999888744
No 268
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.61 E-value=90 Score=28.60 Aligned_cols=126 Identities=13% Similarity=0.063 Sum_probs=69.9
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc---CCCccEEEEeChH--HHH--HHHHHHHHc-CCCCceEEEEc
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPE--AGS--VFLEAWKEA-GTPNVRIGVVG 135 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~---l~~~d~IiftS~~--av~--~f~~~l~~~-~~~~~~i~avG 135 (301)
.-.+.+++.|+++..+-+-... ..+++.+.+.+ ....|.|++--|- ..+ ..++.+... ..|++.-.-+|
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g 128 (296)
T PRK14188 52 SKGKQTKEAGMASFEHKLPADT---SQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAG 128 (296)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHH
Confidence 3445677789887654332221 22344444443 4667899988773 222 122222110 01222222122
Q ss_pred hhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEc-CCcChhHHHHHHHhCCCeeEEE
Q 022176 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~r-g~~~~~~L~~~L~~~G~~v~~~ 207 (301)
.|- . |- ..+.| -|+.+.++.|.... ..|++|+++. +..-...++..|.+.|++|+.+
T Consensus 129 -----~l~-~------~~-~~~~P--cTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~ 188 (296)
T PRK14188 129 -----RLA-T------GE-TALVP--CTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIA 188 (296)
T ss_pred -----HHh-C------CC-CCCcC--CCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEE
Confidence 111 1 32 22444 46788877776543 3789998887 7777888999999999877544
No 269
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=53.60 E-value=1.9e+02 Score=27.81 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=20.7
Q ss_pred CceEEEECH-----HHHHHHHHcCCCeeEecCCCCHHHHHHHHH
Q 022176 254 SNSVACIGE-----TTASAAKRLGLKNVYYPTHPGLEGWVDSIL 292 (301)
Q Consensus 254 ~~~i~aIG~-----~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~ 292 (301)
..+++.+|. ..++.|.++|++++.+......+.+-+.++
T Consensus 300 gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~ 343 (429)
T cd03466 300 GRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLE 343 (429)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHH
Confidence 455555554 235667788888755444333333333333
No 270
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.55 E-value=1.8e+02 Score=26.58 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=79.7
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc---CCCccEEEEeChH--HHH--HHHHHHHHc-CCCCceEEEEc
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPE--AGS--VFLEAWKEA-GTPNVRIGVVG 135 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~---l~~~d~IiftS~~--av~--~f~~~l~~~-~~~~~~i~avG 135 (301)
.-.+.+++.|+++..+-+-... ..+++.+.+.+ ....|.|++--|- ..+ ..++.+... ..|++.-+-+|
T Consensus 53 ~k~k~a~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g 129 (285)
T PRK10792 53 SKRKACEEVGFVSRSYDLPETT---SEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVG 129 (285)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHh
Confidence 3445677789887755442221 22344444433 4578899988772 221 122222110 01233222222
Q ss_pred hhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEc-CCcChhHHHHHHHhCCCeeEEEeeeee
Q 022176 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.|. . |-. .+.| -|+.+.++.|.... ..|++++++. |..-...|...|.+.|++|+.+.-..
T Consensus 130 -----~l~-~------~~~-~~~P--cTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T- 193 (285)
T PRK10792 130 -----RLA-Q------RIP-LLRP--CTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT- 193 (285)
T ss_pred -----HHh-C------CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC-
Confidence 121 1 322 2444 37888887776543 2678877665 44467789999999999886554321
Q ss_pred eeCCCCcHHHHHHcCCCCEEEEEC
Q 022176 213 EPVHHVDQTVLKQALSIPVVAVAS 236 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~I~ftS 236 (301)
. .+.+...+.|+|+-+-
T Consensus 194 ---~----~l~~~~~~ADIvi~av 210 (285)
T PRK10792 194 ---K----NLRHHVRNADLLVVAV 210 (285)
T ss_pred ---C----CHHHHHhhCCEEEEcC
Confidence 1 1222246789888887
No 271
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=53.50 E-value=23 Score=26.62 Aligned_cols=78 Identities=18% Similarity=0.113 Sum_probs=43.3
Q ss_pred CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCC---CccEEEEeChHHHHHHHHHHHHcCCCCceEEEEch
Q 022176 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT---IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~---~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~ 136 (301)
+.+.+..+.|+++|..+..+.--... ..+.+.+.|..++ ..+- |+||..++..+++.- ..+.+++++|.
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~---s~~~~~~~L~~~Gi~~~~~~-i~ts~~~~~~~l~~~----~~~~~v~vlG~ 88 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSR---SREEYAKKLKKLGIPVDEDE-IITSGMAAAEYLKEH----KGGKKVYVLGS 88 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS----HHHHHHHHHHTTTT--GGG-EEEHHHHHHHHHHHH----TTSSEEEEES-
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCC---CHHHHHHHHHhcCcCCCcCE-EEChHHHHHHHHHhc----CCCCEEEEEcC
Confidence 56677788888888666543322111 1234444443331 2233 478888877666532 35789999987
Q ss_pred hh-HHHHHHH
Q 022176 137 GT-ASIFEEV 145 (301)
Q Consensus 137 ~T-a~~L~~~ 145 (301)
.. .+.+++.
T Consensus 89 ~~l~~~l~~~ 98 (101)
T PF13344_consen 89 DGLREELREA 98 (101)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 64 3445555
No 272
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.96 E-value=1.2e+02 Score=25.98 Aligned_cols=76 Identities=9% Similarity=0.045 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEchh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG~~ 137 (301)
.-+.+.++++|.+....-.+......+ ...+...|..-...|.|+.++...+..+++.+.+.+. +++.+++.+..
T Consensus 137 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~~~g~~~p~di~iig~d~~ 216 (268)
T cd06289 137 AGYRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAIVCFNDLVAFGAMSGLRRAGLTPGRDIAVVGFDDV 216 (268)
T ss_pred HHHHHHHHHcCCCCCchhEEecCcchhhHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 445566777774422111111111111 1334444533346899888888877777888877765 36677777764
Q ss_pred h
Q 022176 138 T 138 (301)
Q Consensus 138 T 138 (301)
.
T Consensus 217 ~ 217 (268)
T cd06289 217 A 217 (268)
T ss_pred h
Confidence 3
No 273
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=52.84 E-value=1.7e+02 Score=28.68 Aligned_cols=225 Identities=12% Similarity=0.101 Sum_probs=115.5
Q ss_pred eEEE--eCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHH-HcCCC-
Q 022176 52 KVVV--TRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK-EAGTP- 127 (301)
Q Consensus 52 ~Ili--tR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~-~~~~~- 127 (301)
.|.+ .-+......+...|++.|++|..+- |....++|. .++....++.+||..-+. ..++. +.+.+
T Consensus 195 ~vnl~G~~~~~~~~~i~~lL~~lGI~v~~~l-----p~~~~~eL~----~~~~~~~~c~~~P~ls~a-a~~Le~~~gvp~ 264 (457)
T CHL00073 195 PLVLFGSLPSTVASQLTLELKRQGIKVSGWL-----PSQRYTDLP----SLGEGVYVCGVNPFLSRT-ATTLMRRRKCKL 264 (457)
T ss_pred cEEEEEecCcccHHHHHHHHHHcCCeEeEEe-----CCCCHHHHH----hhCcccEEEEcCcchHHH-HHHHHHHhCCce
Confidence 4444 3445566889999999999997221 112233333 455667777777544432 23332 22311
Q ss_pred -CceEEEEch-hhHHHHHHHhhcccCCCceeecCCCC--cHHHHHHHhccCC--CCCCEEEEEcCCcChhHHHHHHHhCC
Q 022176 128 -NVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRG 201 (301)
Q Consensus 128 -~~~i~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~--~~e~L~~~l~~~~--~~~~~vLi~rg~~~~~~L~~~L~~~G 201 (301)
..+ +-+|. .|.+.|++.. .+.|+. |+.. --..+.+.|.... ..|+|+.+..+..-.-.|...|.+.|
T Consensus 265 ~~~P-~PiGi~~Td~fLr~Ia--~~~G~~----pe~l~~Er~rl~dal~d~~~~L~GKrvai~Gdp~~~i~LarfL~elG 337 (457)
T CHL00073 265 IGAP-FPIGPDGTRAWIEKIC--SVFGIE----PQGLEEREEQIWESLKDYLDLVRGKSVFFMGDNLLEISLARFLIRCG 337 (457)
T ss_pred eecC-CcCcHHHHHHHHHHHH--HHhCcC----HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHHCC
Confidence 222 22664 5667776652 111532 2211 0111333443221 26899998877677778999999999
Q ss_pred CeeEEEeeeeeeeCCCCc--HHHHHHc-C--C-CCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe
Q 022176 202 FEVVRLNTYTTEPVHHVD--QTVLKQA-L--S-IPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 275 (301)
Q Consensus 202 ~~v~~~~vY~~~~~~~~~--~~~~~~~-~--~-~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~ 275 (301)
.+|..+-+-. ....... .+.+..+ + . .+.+++..+. ...+.+.+++. ...++.-|-..+.-|...|+..
T Consensus 338 mevV~vgt~~-~~~~~~~~d~~~l~~~~~~~~~~~~vive~~D-~~el~~~i~~~---~pDLlIgG~~~~~Pl~~~G~p~ 412 (457)
T CHL00073 338 MIVYEIGIPY-MDKRYQAAELALLEDTCRKMNVPMPRIVEKPD-NYNQIQRIREL---QPDLAITGMAHANPLEARGINT 412 (457)
T ss_pred CEEEEEEeCC-CChhhhHHHHHHHHHHhhhcCCCCcEEEeCCC-HHHHHHHHhhC---CCCEEEccccccCchhhcCCcc
Confidence 9887663321 1111111 1122221 1 1 2445555543 45555555443 2334444446777788888863
Q ss_pred eE-----ecCC---CCHHHHHHHHHHHHHcc
Q 022176 276 VY-----YPTH---PGLEGWVDSILEALREH 298 (301)
Q Consensus 276 ~~-----v~~~---ps~e~ll~ai~~~~~~~ 298 (301)
.. .... -..-.|++.+.+-++.+
T Consensus 413 ~d~~~~~~~pi~Gy~ga~~L~e~~~~~l~r~ 443 (457)
T CHL00073 413 KWSVEFTFAQIHGFTNARDVLELVTRPLRRN 443 (457)
T ss_pred eEecceEEEccccHhhHHHHHHHHHHHHHHH
Confidence 11 1122 23345666666555443
No 274
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=52.69 E-value=2.1e+02 Score=27.18 Aligned_cols=38 Identities=11% Similarity=0.018 Sum_probs=31.4
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEece
Q 022176 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPL 81 (301)
Q Consensus 44 ~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~ 81 (301)
.++|++|-+|..+-.-+ +..-|...|.+.|++|...++
T Consensus 39 ~~kPlkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~c 77 (420)
T COG0499 39 EEKPLKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASC 77 (420)
T ss_pred hcCCCCccEEEEEEeehHHHHHHHHHHHhcCceEEEecC
Confidence 56999999999876653 678999999999999987554
No 275
>PLN02409 serine--glyoxylate aminotransaminase
Probab=52.65 E-value=43 Score=31.71 Aligned_cols=62 Identities=21% Similarity=0.125 Sum_probs=43.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC--CCccEEEEeCh
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSP 111 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l--~~~d~IiftS~ 111 (301)
.|.+|+++.+......+...++..|+++..+|.-.-. ..+.+.+++.+... .+...|++++.
T Consensus 83 ~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~-~~~~~~l~~~l~~~~~~~~k~v~~~~~ 146 (401)
T PLN02409 83 PGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQ-GADLDILKSKLRQDTNHKIKAVCVVHN 146 (401)
T ss_pred CCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCC-CCCHHHHHHHHhhCcCCCccEEEEEee
Confidence 5789999997766667778888899999988853211 12456777777432 26788888765
No 276
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=52.62 E-value=94 Score=23.47 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=49.1
Q ss_pred ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEEC--hHHHHHHHHhhhccc--CCCceEEEECH
Q 022176 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVAS--PSAVRSWVNLISDTE--QWSNSVACIGE 262 (301)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS--~sav~~~~~~l~~~~--~~~~~i~aIG~ 262 (301)
+-..+...|++.|++|..+..... .+++.+. ..++|.|.|++ ........+..+... ..+.++++-|+
T Consensus 16 Gl~~la~~l~~~G~~v~~~d~~~~------~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDILDANVP------PEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEEESSB-------HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHHHHCCCeEEEECCCCC------HHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 346788999999998765544221 1333332 25899999986 444544544444322 23678888886
Q ss_pred H-HH---HHHHH-cCCCeeEec
Q 022176 263 T-TA---SAAKR-LGLKNVYYP 279 (301)
Q Consensus 263 ~-Ta---~al~~-~G~~~~~v~ 279 (301)
. |. +.+++ .|+..++.-
T Consensus 90 ~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 90 HATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp SSGHHHHHHHHHHHTSEEEEEE
T ss_pred chhcChHHHhccCcCcceecCC
Confidence 4 22 22434 677655443
No 277
>PRK09004 FMN-binding protein MioC; Provisional
Probab=52.43 E-value=40 Score=27.24 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH--------HHHHHHHHHHHc--CCCCceEE
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEA--GTPNVRIG 132 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~--------av~~f~~~l~~~--~~~~~~i~ 132 (301)
..+++.+++.|+++..+.+. + +. ++..+|.+||.+++ ..+.|++.+.+. .+.+++++
T Consensus 20 ~~l~~~~~~~g~~~~~~~~~------~---~~----~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~g~~~a 86 (146)
T PRK09004 20 DHLAEKLEEAGFSTETLHGP------L---LD----DLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLSQVRFA 86 (146)
T ss_pred HHHHHHHHHcCCceEEeccC------C---HH----HhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCCCCEEE
Confidence 45556667789888754321 1 11 33456666555432 345677766553 34566666
Q ss_pred EEch
Q 022176 133 VVGA 136 (301)
Q Consensus 133 avG~ 136 (301)
+.|-
T Consensus 87 VfGl 90 (146)
T PRK09004 87 AIGI 90 (146)
T ss_pred EEee
Confidence 6553
No 278
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.13 E-value=94 Score=22.95 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=33.8
Q ss_pred EEEeCC-CCchHHHHHHHHhCCCcEEEeceeEeeeCCCc-hHHHHHHhcCCCccEEEEeChHH
Q 022176 53 VVVTRE-RGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEA 113 (301)
Q Consensus 53 IlitR~-~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~-~~l~~~l~~l~~~d~IiftS~~a 113 (301)
|||.-. ......+.+.++++|++.... -+-...... ..+++ .+...|.||+..-.-
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~h--g~~~~~~~~~~~l~~---~i~~aD~VIv~t~~v 59 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHH--GRDGGDEKKASRLPS---KIKKADLVIVFTDYV 59 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEE--ecCCCCccchhHHHH---hcCCCCEEEEEeCCc
Confidence 555554 345678999999999999887 111111111 12333 467889988765443
No 279
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=51.99 E-value=1.5e+02 Score=25.39 Aligned_cols=151 Identities=17% Similarity=0.091 Sum_probs=78.3
Q ss_pred CCccEEEEeCh-HHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCC
Q 022176 101 TIFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (301)
Q Consensus 101 ~~~d~IiftS~-~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~ 178 (301)
.+.|.||.... ..+....+.+.+ .+++++..+.... .+... .. ..-..+.+.. .....+++.+.... ..
T Consensus 65 ~~v~~iig~~~~~~~~~~~~~~~~---~~ip~i~~~~~~~-~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 135 (298)
T cd06268 65 DGVDAVIGPLSSGVALAAAPVAEE---AGVPLISPGATSP-ALTGK---GN-PYVFRTAPSDAQQAAALADYLAEKG-KV 135 (298)
T ss_pred CCceEEEcCCcchhHHhhHHHHHh---CCCcEEccCCCCc-ccccC---CC-ceEEEcccCcHHHHHHHHHHHHHhc-CC
Confidence 35777776543 233444555544 3567776655432 22211 00 1111122322 23455666665543 24
Q ss_pred CEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-HHHHHHHHhhhcc
Q 022176 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLISDT 250 (301)
Q Consensus 179 ~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~-sav~~~~~~l~~~ 250 (301)
++|.++.++.. .+.+.+.+++.|.++.....|.... ......+..+ ...|+|++.+. ..+..+++.+.+.
T Consensus 136 ~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~ 213 (298)
T cd06268 136 KKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGA--TDFSPLIAKLKAAGPDAVFLAGYGGDAALFLKQAREA 213 (298)
T ss_pred CEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCC--ccHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHc
Confidence 68887766543 3566778888998776555554321 1222222222 35787777765 6667777777665
Q ss_pred cCCCceEEEECHH
Q 022176 251 EQWSNSVACIGET 263 (301)
Q Consensus 251 ~~~~~~i~aIG~~ 263 (301)
+. +.+++..+..
T Consensus 214 g~-~~~~~~~~~~ 225 (298)
T cd06268 214 GL-KVPIVGGDGA 225 (298)
T ss_pred CC-CCcEEecCcc
Confidence 43 5666654433
No 280
>PLN02522 ATP citrate (pro-S)-lyase
Probab=51.91 E-value=2.8e+02 Score=28.26 Aligned_cols=208 Identities=15% Similarity=0.104 Sum_probs=106.0
Q ss_pred CCCcEEEeceeEeeeCCCchHHHHHHhcCCC-ccEEEEeChHHH-HHHHHHHHHcCCCCceEEEEc--hhhHHHHHHHhh
Q 022176 72 HRIDCLELPLIQHAQGPDTDRLSSVLNADTI-FDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVG--AGTASIFEEVIQ 147 (301)
Q Consensus 72 ~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~-~d~IiftS~~av-~~f~~~l~~~~~~~~~i~avG--~~Ta~~L~~~~~ 147 (301)
.|-++..+|+|.++. ++.+.-.+ --.|||.++..+ +..++.+...+.+.+-|++=| ..-.+.+.+...
T Consensus 56 ~g~~~~~iPVf~tv~--------eA~~~~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar 127 (608)
T PLN02522 56 FGQEEIAIPVHGSIE--------AACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYAR 127 (608)
T ss_pred cCCEeeCccccchHH--------HHHHhCCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHH
Confidence 588888889988772 33433323 335678877554 567777765444333333322 111222222211
Q ss_pred cccCCCceeecCCCC---cHHH---------HHHHhccCCCCCCEEEEE-cCCcChhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 148 SSKCSLDVAFSPSKA---TGKI---------LASELPKNGKKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 148 ~~~~G~~~~~~p~~~---~~e~---------L~~~l~~~~~~~~~vLi~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
. .|.+. +.|... +... +...+.....+.++|-++ ++..-...+.+.+..+|.-+..+.-.-..+
T Consensus 128 ~--~g~rl-IGPNc~Gii~p~~~kig~~~~~~~~~~~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~ 204 (608)
T PLN02522 128 A--NNKVV-IGPATVGGIQAGAFKIGDTAGTLDNIIQCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDV 204 (608)
T ss_pred H--cCCEE-ECCCCCeeEccCcccccccccccccccCcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 1 16653 344320 0100 000111111123566554 444335678888999998777777666644
Q ss_pred CC-CCcHHHHHHc---CCCCEEEEE---ChHHHHHHHHhhhcccCCCceEE--EECHH----------------------
Q 022176 215 VH-HVDQTVLKQA---LSIPVVAVA---SPSAVRSWVNLISDTEQWSNSVA--CIGET---------------------- 263 (301)
Q Consensus 215 ~~-~~~~~~~~~~---~~~d~I~ft---S~sav~~~~~~l~~~~~~~~~i~--aIG~~---------------------- 263 (301)
.. .+..+.++.+ .+-.+|++. +...-+.|++.+++.. .+++++ ..|.+
T Consensus 205 ~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ 283 (608)
T PLN02522 205 FPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDME 283 (608)
T ss_pred CCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEeccCCCccCccccccccccccccCCCc
Confidence 31 1123334333 344566665 6677778887776532 122222 22332
Q ss_pred ----HHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHH
Q 022176 264 ----TASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 264 ----Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
--.+++++|+.+ + .+.++|.+.+++.++
T Consensus 284 ta~~k~aAlr~aGv~v---v--~s~~El~~~~~~~~~ 315 (608)
T PLN02522 284 SAQAKNKALKDAGAIV---P--TSFEALEAAIKETFE 315 (608)
T ss_pred cHHHHHHHHHHCCCeE---e--CCHHHHHHHHHHHHH
Confidence 234577788754 2 367888888777654
No 281
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=51.88 E-value=54 Score=27.26 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=39.3
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022176 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a 113 (301)
..+.|++|+|.-..+- +..+++.|.++|+++..+-- ..+++.+. +..+|.||.+++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r-------~~~~l~~~---l~~aDiVIsat~~~ 98 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS-------KTKNLKEH---TKQADIVIVAVGKP 98 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC-------CchhHHHH---HhhCCEEEEcCCCC
Confidence 4689999999987764 56699999999987543221 12334433 46788887666554
No 282
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=51.84 E-value=45 Score=28.66 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEch
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG~ 136 (301)
..+.+.|+++|.++.. .+......+ .+.+.+.+..-...|+|+.++...+..+++.+.+.+. +++.+++.+.
T Consensus 137 ~gf~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p~di~v~g~d~ 213 (266)
T cd06282 137 AGYRAAMRAAGLAPLP--PVEIPFNTAALPSALLALLTAHPAPTAIFCSNDLLALAVIRALRRLGLRVPDDLSVVGFDG 213 (266)
T ss_pred HHHHHHHHHcCCCCCc--cccCCCcHHHHHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeecc
Confidence 3445667778865432 221111111 1233344433345789999888877778888888775 3556666654
No 283
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=51.51 E-value=13 Score=31.84 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=36.3
Q ss_pred CCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh
Q 022176 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (301)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~ 111 (301)
.+.++.|.+.|++-++++.++|.-..+. .+.+.++.+..||.||+..-
T Consensus 31 ~~GAd~Ll~~Lr~g~~dv~yMpAH~~q~-----~FPqtme~L~~YDaivlSDi 78 (254)
T COG5426 31 HEGADPLLKALRGGEYDVTYMPAHDAQE-----KFPQTMEGLDAYDAIVLSDI 78 (254)
T ss_pred ccCchHHHHHHhCCCcceEEechHHHHH-----hcchhhhhhcccceEEEeec
Confidence 4578999999999999999999766542 23344556789999987543
No 284
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=51.49 E-value=2e+02 Score=26.40 Aligned_cols=182 Identities=12% Similarity=0.050 Sum_probs=80.7
Q ss_pred CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEc--hhh-------HHHHHHHhhcccCCCce-----eecCC---CC
Q 022176 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG--AGT-------ASIFEEVIQSSKCSLDV-----AFSPS---KA 162 (301)
Q Consensus 100 l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG--~~T-------a~~L~~~~~~~~~G~~~-----~~~p~---~~ 162 (301)
+...|.|+++|..-.+.+.+... +.+..++.+|. -.+ ...+++.+ |+.. .++.. .-
T Consensus 142 ~~~ad~vi~~S~~~~~~~~~~~~--~~~~~~i~vi~ng~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~Grl~~~K 214 (388)
T TIGR02149 142 IEAADRVIAVSGGMREDILKYYP--DLDPEKVHVIYNGIDTKEYKPDDGNVVLDRY-----GIDRSRPYILFVGRITRQK 214 (388)
T ss_pred HhhCCEEEEccHHHHHHHHHHcC--CCCcceEEEecCCCChhhcCCCchHHHHHHh-----CCCCCceEEEEEccccccc
Confidence 46789999999887776654321 22222333332 211 12222221 4321 12211 12
Q ss_pred cHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHH----hCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChH
Q 022176 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLS----NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 163 ~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~----~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
..+.|++.+.... .+.++++..+....+.+.+.++ +.+..-..+ ++-.. ....+++...+...|+++++|..
T Consensus 215 g~~~li~a~~~l~-~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~--~~~~~~~~~~~~~aDv~v~ps~~ 290 (388)
T TIGR02149 215 GVPHLLDAVHYIP-KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGI-IWINK--MLPKEELVELLSNAEVFVCPSIY 290 (388)
T ss_pred CHHHHHHHHHHHh-hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCce-EEecC--CCCHHHHHHHHHhCCEEEeCCcc
Confidence 3566777766543 2346666554444333333333 332210001 11000 11112333335678999998842
Q ss_pred HH--HHHHHhhhcccCCCceEEEEC-HHHHHHHHHcCCCeeEecCCCCH------HHHHHHHHHHHHcc
Q 022176 239 AV--RSWVNLISDTEQWSNSVACIG-ETTASAAKRLGLKNVYYPTHPGL------EGWVDSILEALREH 298 (301)
Q Consensus 239 av--~~~~~~l~~~~~~~~~i~aIG-~~Ta~al~~~G~~~~~v~~~ps~------e~ll~ai~~~~~~~ 298 (301)
.- ...++.+. -++++++.. ....+.++. |..-.++ +..+. ++|.++|.+.++++
T Consensus 291 e~~g~~~lEA~a----~G~PvI~s~~~~~~e~i~~-~~~G~~~-~~~~~~~~~~~~~l~~~i~~l~~~~ 353 (388)
T TIGR02149 291 EPLGIVNLEAMA----CGTPVVASATGGIPEVVVD-GETGFLV-PPDNSDADGFQAELAKAINILLADP 353 (388)
T ss_pred CCCChHHHHHHH----cCCCEEEeCCCCHHHHhhC-CCceEEc-CCCCCcccchHHHHHHHHHHHHhCH
Confidence 10 01122222 256666542 234444443 2222232 22344 78888888776543
No 285
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=51.12 E-value=2.9e+02 Score=28.25 Aligned_cols=210 Identities=17% Similarity=0.175 Sum_probs=104.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT--- 126 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~--- 126 (301)
+..|-+.-+--.|..-.+.|+++|+.++. + +.++..-+.|||.+--.-....+.+.+.+.
T Consensus 30 ~~~i~~lg~ivHN~~vv~~l~~~Gv~~v~----------~-------~~~~~~~~~vii~aHG~~~~~~~~~~~~~~~vi 92 (647)
T PRK00087 30 KGKIYTLGPLIHNNQVVEKLKKKGIKPIE----------D-------IDELNEGDTIIIRSHGVPPEVLEELKDKGLKVI 92 (647)
T ss_pred CCCEEEeCCCcCCHHHHHHHHHCCCEEeC----------C-------HhhCCCCCEEEEeCCCCCHHHHHHHHHCCCeEE
Confidence 46676677777888999999999987762 1 112333445655554444444555555443
Q ss_pred -------------------CCceEEEEchhhHHHHHHHhhcccCCCc---eeecCCCCcHHHHHHHhccCCCCCCEEEEE
Q 022176 127 -------------------PNVRIGVVGAGTASIFEEVIQSSKCSLD---VAFSPSKATGKILASELPKNGKKKCTVLYP 184 (301)
Q Consensus 127 -------------------~~~~i~avG~~Ta~~L~~~~~~~~~G~~---~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~ 184 (301)
.+-.++.+|..-....+..+ |+. ..++ .+.+++ +.|.. .+++.++
T Consensus 93 DaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~~-----g~~~~~~~vv---~~~~~~-~~~~~----~~~~~~~ 159 (647)
T PRK00087 93 DATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGIN-----GWCNNSAIIV---EDGEEA-EKLPF----DKKICVV 159 (647)
T ss_pred ECCCcCchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeec-----cccCCCEEEE---CCHHHH-hhCCC----CCCEEEE
Confidence 23444444444333333222 211 0011 123333 23321 2455554
Q ss_pred cCCcC-h---hHHHHHHHhCCCeeEEEeeeeeeeCCCCcH--HHHHHcCCCCEEEEE----ChHHHHHHHHhhhcccCCC
Q 022176 185 ASAKA-S---NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ--TVLKQALSIPVVAVA----SPSAVRSWVNLISDTEQWS 254 (301)
Q Consensus 185 rg~~~-~---~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~--~~~~~~~~~d~I~ft----S~sav~~~~~~l~~~~~~~ 254 (301)
.-.-- . ..+.+.|+++.- .+.++.+.+...... .+.+...+.|++++- |+++ +.+++.....+
T Consensus 160 ~QTT~~~~~~~~~~~~l~~~~~---~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt-~~L~~i~~~~~--- 232 (647)
T PRK00087 160 SQTTEKQENFEKVLKELKKKGK---EVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNT-TKLYEICKSNC--- 232 (647)
T ss_pred EcCCCcHHHHHHHHHHHHHhCC---CcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccH-HHHHHHHHHHC---
Confidence 43322 2 246666776543 345566665443321 122324689988875 4444 44555554432
Q ss_pred ceEEEECHHHHHHHHH---cCCCee-EecCCCCHHHHHHHHHHHHHcc
Q 022176 255 NSVACIGETTASAAKR---LGLKNV-YYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 255 ~~i~aIG~~Ta~al~~---~G~~~~-~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
.+.+-| .+++.+.. .|.+.+ +.+...+++.+++.+..+++..
T Consensus 233 ~~~~~i--e~~~el~~~~~~~~~~vgitagaStP~~~i~~v~~~l~~~ 278 (647)
T PRK00087 233 TNTIHI--ENAGELPEEWFKGVKIIGVTAGASTPDWIIEEVIKKMSEL 278 (647)
T ss_pred CCEEEE--CChHHCCHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHh
Confidence 222222 11222221 133333 4566677888888877777654
No 286
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=51.07 E-value=24 Score=25.62 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=27.4
Q ss_pred EECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHH
Q 022176 259 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 292 (301)
Q Consensus 259 aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~ 292 (301)
.||+...+.|++.|++++. ....+.+..++++.
T Consensus 61 ~iG~~~~~~L~~~gI~v~~-~~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 61 GIGEGAFRALKEAGIKVYQ-GAGGDIEEALEAYL 93 (94)
T ss_dssp CSCHHHHHHHHHTTSEEEE-STSSBHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCEEEE-cCCCCHHHHHHHHh
Confidence 5899999999999998855 47788888887764
No 287
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=50.99 E-value=43 Score=26.48 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=53.0
Q ss_pred CEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHhhhc
Q 022176 179 CTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISD 249 (301)
Q Consensus 179 ~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~ 249 (301)
++|+++.+.... ..+.+.+++.|..+....+................+ ..+|+|+..+...+-.++..+.+
T Consensus 10 r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~~~~~~a~~~~~~l~~ 89 (160)
T PF13377_consen 10 RRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIICSNDRLALGVLRALRE 89 (160)
T ss_dssp SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEESSHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEEcCHHHHHHHHHHHHH
Confidence 577777754432 246678889998865544433211111001111111 26799999999999999999987
Q ss_pred ccC---CCceEEEECH
Q 022176 250 TEQ---WSNSVACIGE 262 (301)
Q Consensus 250 ~~~---~~~~i~aIG~ 262 (301)
.+. .++.+++.+.
T Consensus 90 ~g~~vP~di~vv~~~~ 105 (160)
T PF13377_consen 90 LGIRVPQDISVVSFDD 105 (160)
T ss_dssp TTSCTTTTSEEEEESS
T ss_pred cCCcccccccEEEecC
Confidence 653 4788999985
No 288
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=50.71 E-value=76 Score=26.87 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=28.0
Q ss_pred HHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEchhh
Q 022176 94 SSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (301)
Q Consensus 94 ~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG~~T 138 (301)
.+.+..-...|.|+.++......+++.+.+.+. .++.+++.+...
T Consensus 170 ~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~g~~i~~~i~i~~~d~~~ 217 (264)
T cd01537 170 EELLTAHPDPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGTP 217 (264)
T ss_pred HHHHhcCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCCCeEEEeecCcc
Confidence 344433334788888876666666777777765 356666666544
No 289
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=50.59 E-value=2.5e+02 Score=27.43 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=96.5
Q ss_pred CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEc-hh
Q 022176 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AG 137 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-~~~~~~i~avG-~~ 137 (301)
.+-.++...|++.|+++.... +. + ..+++ +.+......-+..++.....+.+++++. +.+-+...-+| ..
T Consensus 204 gd~~elk~lL~~~Gl~v~~~~-----~~-~-~s~ee-i~~~~~A~lniv~~~~~~~~~A~~L~erfGiP~~~~~p~G~~~ 275 (475)
T PRK14478 204 GELWQVKPLLDRLGIRVVACI-----TG-D-ARYDD-VASAHRARANMMVCSGAMINLARKMEERYGIPFFEGSFYGIED 275 (475)
T ss_pred CCHHHHHHHHHHcCCeEEEEc-----CC-C-CCHHH-HHhcccCcEEEEEcHHHHHHHHHHHHHHhCCCEEecCCCcHHH
Confidence 445789999999999988421 11 1 12222 3345555554444555545566777653 33322111144 34
Q ss_pred hHHHHHHHhhcccCCCceeecCCC--CcH--------HHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHhCCCeeE
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSK--ATG--------KILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVV 205 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~--~~~--------e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~ 205 (301)
|.+.|++.. .-++|-. .+.. ... +.+...+... ...|+++.+..+....-.|.+.|.+.|.+|.
T Consensus 276 T~~~l~~la-~~~~~~~---~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~vaI~~~~~~~~~la~~l~ElGm~v~ 351 (475)
T PRK14478 276 TSDSLRQIA-RLLVERG---ADAELVERTEALIAEEEAKAWAALEPYRPRLEGKRVLLYTGGVKSWSVVKALQELGMEVV 351 (475)
T ss_pred HHHHHHHHH-HHHhhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHHCCCEEE
Confidence 666666652 1000100 1110 001 1122223221 1267898887665444568999999999998
Q ss_pred EEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe
Q 022176 206 RLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 275 (301)
Q Consensus 206 ~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~ 275 (301)
.+.++... +...+. ++.+...+.+++...... .+.+.+.+. +..++.-|..-.....+.|+..
T Consensus 352 ~~~~~~~~--~~~~~~-l~~~~~~~~~v~~d~~~~-e~~~~i~~~---~pDliig~s~~~~~a~k~giP~ 414 (475)
T PRK14478 352 GTSVKKST--DEDKER-IKELMGPDAHMIDDANPR-ELYKMLKEA---KADIMLSGGRSQFIALKAGMPW 414 (475)
T ss_pred EEEEECCC--HHHHHH-HHHHcCCCcEEEeCCCHH-HHHHHHhhc---CCCEEEecCchhhhhhhcCCCE
Confidence 77665432 111122 222223456666654322 222233321 2334433444445566678764
No 290
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=50.58 E-value=1.2e+02 Score=27.31 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCC-C--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEch
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGP-D--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~-d--~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG~ 136 (301)
.-+.+.++++|..+.. +...... + .+.+...+..-..+|+|+.++-..+...++.+.+.+. +++.+++.+.
T Consensus 199 ~Gf~~al~~~g~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~disv~gfd~ 275 (328)
T PRK11303 199 QGFRQALKDDPREVHY---LYANSFEREAGAQLFEKWLETHPMPDALFTTSYTLLQGVLDVLLERPGELPSDLAIATFGD 275 (328)
T ss_pred HHHHHHHHHcCCCceE---EEeCCCChHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 3456677777765321 1111011 1 1233444433345788887776666566677766664 3566666654
No 291
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=50.43 E-value=93 Score=27.05 Aligned_cols=80 Identities=20% Similarity=0.149 Sum_probs=48.4
Q ss_pred CeEEEeCCCCc--hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH------------HH
Q 022176 51 PKVVVTRERGK--NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG------------SV 116 (301)
Q Consensus 51 ~~IlitR~~~~--~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av------------~~ 116 (301)
|+|+|.+-... ..++.+.|++.|+++..++.- +. .+..+|.||+...... ..
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~------~~--------~l~~~d~lilpGG~~~~d~~~~~~~~~~~~ 66 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYE------DG--------SLPDYDGVVLPGGFSYGDYLRAGAIAAASP 66 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecC------CC--------CCCCCCEEEECCCCcccccccccchhcchH
Confidence 46777665433 347889999999999877531 10 1457899999885321 11
Q ss_pred HHHHHHHcCCCCceEEEEchhhHHHHHHH
Q 022176 117 FLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (301)
Q Consensus 117 f~~~l~~~~~~~~~i~avG~~Ta~~L~~~ 145 (301)
+.+.+.+....+.+++.|.-+. +.|-+.
T Consensus 67 ~~~~l~~~~~~g~pvlgIC~G~-QlLa~~ 94 (227)
T TIGR01737 67 IMQEVREFAEKGVPVLGICNGF-QILVEA 94 (227)
T ss_pred HHHHHHHHHHcCCEEEEECHHH-HHHHHc
Confidence 2222322222467888888765 566655
No 292
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=50.43 E-value=1.6e+02 Score=25.67 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCcC--------hhHHHHHHHhCCCeeEEEeeeeeeeCCC----CcH---HHHHHcCCCCEEEEECh----
Q 022176 177 KKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHH----VDQ---TVLKQALSIPVVAVASP---- 237 (301)
Q Consensus 177 ~~~~vLi~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~----~~~---~~~~~~~~~d~I~ftS~---- 237 (301)
.-.+|+++.|... .+.+.+.+.+.|+++..+.+ ...|... ..+ .+.+.....|+++|.||
T Consensus 25 ~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl-~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEYn~ 103 (219)
T TIGR02690 25 HIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDP-PGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPERHG 103 (219)
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCc-ccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcccc
Confidence 4458888877653 23455566667888876552 2222111 111 12223467899999998
Q ss_pred ---HHHHHHHHhhhcc
Q 022176 238 ---SAVRSWVNLISDT 250 (301)
Q Consensus 238 ---sav~~~~~~l~~~ 250 (301)
.+++++++++...
T Consensus 104 sipg~LKNaiDwls~~ 119 (219)
T TIGR02690 104 AITGSQKDQIDWIPLS 119 (219)
T ss_pred CcCHHHHHHHHhcccC
Confidence 6888899988764
No 293
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=50.11 E-value=1.7e+02 Score=26.37 Aligned_cols=124 Identities=9% Similarity=0.045 Sum_probs=60.2
Q ss_pred HHHHHHHhccCCC--CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH--
Q 022176 164 GKILASELPKNGK--KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-- 239 (301)
Q Consensus 164 ~e~L~~~l~~~~~--~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sa-- 239 (301)
.+.|++.+..... .+-++++++.....+.+.+..++.|..- .+..+..++ .+++...+...|+++++|...
T Consensus 203 ~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~-~v~~~g~~~----~~~l~~~~~~ad~~v~ps~~~~~ 277 (367)
T cd05844 203 PLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGG-RVTFLGAQP----HAEVRELMRRARIFLQPSVTAPS 277 (367)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCC-eEEECCCCC----HHHHHHHHHhCCEEEECcccCCC
Confidence 4455565543221 2345555554333455666566655321 222222221 123333356789999887521
Q ss_pred ------HHHHHHhhhcccCCCceEEEECH-HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 240 ------VRSWVNLISDTEQWSNSVACIGE-TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 240 ------v~~~~~~l~~~~~~~~~i~aIG~-~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
-..+++.+. .++++++-.. ...+.+.+.+ .- ++.+..+.+++.++|.+.++++
T Consensus 278 ~~~E~~~~~~~EA~a----~G~PvI~s~~~~~~e~i~~~~-~g-~~~~~~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 278 GDAEGLPVVLLEAQA----SGVPVVATRHGGIPEAVEDGE-TG-LLVPEGDVAALAAALGRLLADP 337 (367)
T ss_pred CCccCCchHHHHHHH----cCCCEEEeCCCCchhheecCC-ee-EEECCCCHHHHHHHHHHHHcCH
Confidence 122333332 2456655322 2333343322 22 2334468899999998877643
No 294
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=49.93 E-value=2.1e+02 Score=26.25 Aligned_cols=65 Identities=9% Similarity=0.021 Sum_probs=40.2
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCC-cHHHHHHcCCCCEEEEEChHHHH
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-DQTVLKQALSIPVVAVASPSAVR 241 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~~~~~~~~~~~d~I~ftS~sav~ 241 (301)
.|+++.++.-......+++.++.-|.+|..+.-|........ ...+-+.+...|+|++.-|.+-+
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~ 209 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEK 209 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCch
Confidence 678888888887788899999999987654433321100000 01122224678999998775543
No 295
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=49.75 E-value=34 Score=28.35 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCcChh----HHHHHHHhCCCeeEEEeee
Q 022176 176 KKKCTVLYPASAKASN----EIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 176 ~~~~~vLi~rg~~~~~----~L~~~L~~~G~~v~~~~vY 210 (301)
....+|++++|.+.+. .+...|.++|++|..+.++
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~ 61 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVG 61 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEe
Confidence 3568999999987643 5888999999987664443
No 296
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=49.73 E-value=17 Score=27.27 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=31.0
Q ss_pred EEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHH
Q 022176 258 ACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEAL 295 (301)
Q Consensus 258 ~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~ 295 (301)
=.||+++++-|...|+..+.--..-+++.|-+.+++.-
T Consensus 18 P~IG~a~a~DL~~LGi~s~~~L~g~dP~~Ly~~lc~~~ 55 (93)
T PF11731_consen 18 PNIGKATAEDLRLLGIRSPADLKGRDPEELYERLCALT 55 (93)
T ss_pred CCccHHHHHHHHHcCCCCHHHHhCCCHHHHHHHHHHHc
Confidence 36999999999999998755556678899988887643
No 297
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=49.59 E-value=1.9e+02 Score=25.67 Aligned_cols=184 Identities=13% Similarity=0.089 Sum_probs=85.0
Q ss_pred CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHH---------hhcccCCCceeecCC---CCcHHHH
Q 022176 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV---------IQSSKCSLDVAFSPS---KATGKIL 167 (301)
Q Consensus 100 l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~---------~~~~~~G~~~~~~p~---~~~~e~L 167 (301)
+...|.+++.|....+.+. ..+....++.++....-...... ...........++.. ....+.+
T Consensus 163 ~~~~d~vi~~s~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l 238 (394)
T cd03794 163 YRRADAIVVISPGMREYLV----RRGVPPEKISVIPNGVDLELFKPPPADESLRKELGLDDKFVVLYAGNIGRAQGLDTL 238 (394)
T ss_pred HhcCCEEEEECHHHHHHHH----hcCCCcCceEEcCCCCCHHHcCCccchhhhhhccCCCCcEEEEEecCcccccCHHHH
Confidence 4678999999988887654 22333445555443321111100 000000111112211 1234555
Q ss_pred HHHhccCCC-CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHH-----
Q 022176 168 ASELPKNGK-KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR----- 241 (301)
Q Consensus 168 ~~~l~~~~~-~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~----- 241 (301)
++.+..... .+-++.+.+.....+.+.+.....+.. .+..+...+ .+++.+.+...|+++++|....-
T Consensus 239 ~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~--~v~~~g~~~----~~~~~~~~~~~di~i~~~~~~~~~~~~~ 312 (394)
T cd03794 239 LEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLD--NVTFLGRVP----KEELPELLAAADVGLVPLKPGPAFEGVS 312 (394)
T ss_pred HHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCC--cEEEeCCCC----hHHHHHHHHhhCeeEEeccCcccccccC
Confidence 565544322 234566655544455555544444332 233322111 12333334578988888775421
Q ss_pred --HHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 242 --SWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 242 --~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
.+++.+. .++++++.........-..| ..-+..+..+.+++.++|.+.+.++
T Consensus 313 p~~~~Ea~~----~G~pvi~~~~~~~~~~~~~~-~~g~~~~~~~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 313 PSKLFEYMA----AGKPVLASVDGESAELVEEA-GAGLVVPPGDPEALAAAILELLDDP 366 (394)
T ss_pred chHHHHHHH----CCCcEEEecCCCchhhhccC-CcceEeCCCCHHHHHHHHHHHHhCh
Confidence 1233332 25666665333323322222 1112234348899999998887443
No 298
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=49.31 E-value=2.4e+02 Score=26.82 Aligned_cols=219 Identities=15% Similarity=0.112 Sum_probs=106.2
Q ss_pred CCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEc-h
Q 022176 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-A 136 (301)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~-~~~~~~~i~avG-~ 136 (301)
..+..++.+.|++.|+++..+- ......++ +.+......-+..++..-..+.+.+++ .+.+-+...=+| .
T Consensus 170 ~~d~~el~~lL~~~Gl~v~~~~----~~~~s~ee----i~~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~~~~p~G~~ 241 (410)
T cd01968 170 AGELWGVKPLLEKLGIRVLASI----TGDSRVDE----IRRAHRAKLNVVQCSKSMIYLARKMEEKYGIPYIEVSFYGIR 241 (410)
T ss_pred cccHHHHHHHHHHcCCeEEEEe----CCCCCHHH----HHhhhhCcEEEEEchhHHHHHHHHHHHHhCCCeEecCcCcHH
Confidence 3456799999999999987531 11112232 234556666665565444445666654 333322111144 3
Q ss_pred hhHHHHHHHhhcccCCCce--eecCCC--CcHHHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeee
Q 022176 137 GTASIFEEVIQSSKCSLDV--AFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~--~~~p~~--~~~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY 210 (301)
.|.+.|++.. ...|... +..++. ..-+.+.+.+.+. ...|+++.+..+....-.+.+.|.+.|.+|..+.++
T Consensus 242 ~t~~~l~~ia--~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~elGm~v~~~~~~ 319 (410)
T cd01968 242 DTSKSLRNIA--ELLGDEELIERTEELIAREEARLRPELAPYRARLEGKKAALYTGGVKSWSLVSALQDLGMEVVATGTQ 319 (410)
T ss_pred HHHHHHHHHH--HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEecc
Confidence 5666666651 1114321 001110 0011122333221 126789988776666678999999999998766544
Q ss_pred eeeeCCCCcHHHHHHcCCCCEEEEEChHH--HHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecC-----CCC
Q 022176 211 TTEPVHHVDQTVLKQALSIPVVAVASPSA--VRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPT-----HPG 283 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~I~ftS~sa--v~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~-----~ps 283 (301)
...+ ...+.+.+ ....+.+++..... +...++.. +..++.-+..-...+++.|+..+-+.. ...
T Consensus 320 ~~~~--~~~~~~~~-~~~~~~~v~~~~~~~e~~~~i~~~------~pDl~ig~s~~~~~a~~~gip~~~~~~~~~~~~~G 390 (410)
T cd01968 320 KGTK--EDYERIKE-LLGEGTVIVDDANPRELKKLLKEK------KADLLVAGGKERYLALKLGIPFCDINHERKHPYAG 390 (410)
T ss_pred cCCH--HHHHHHHH-HhCCCcEEEeCCCHHHHHHHHhhc------CCCEEEECCcchhhHHhcCCCEEEccccccCCccc
Confidence 3211 11112222 22345555555433 33333322 223332333334555667776432211 134
Q ss_pred HHHHHHHHHHHHH
Q 022176 284 LEGWVDSILEALR 296 (301)
Q Consensus 284 ~e~ll~ai~~~~~ 296 (301)
.++.+..+++..+
T Consensus 391 y~G~~~l~~~i~n 403 (410)
T cd01968 391 YEGMLNFAKEVDL 403 (410)
T ss_pred hhhHHHHHHHHHH
Confidence 5666665555443
No 299
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=49.29 E-value=1.4e+02 Score=28.00 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=44.6
Q ss_pred CcHHHHHHHhccCC--CCCCEEEE-EcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChH
Q 022176 162 ATGKILASELPKNG--KKKCTVLY-PASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 162 ~~~e~L~~~l~~~~--~~~~~vLi-~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
-|+.+.++.|.... ..|+++++ =|+..-...|...|.++|+.|+.+.-.. .+ ..+ ...+.|+|+-.-+.
T Consensus 196 CTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T----~n-l~~---~~~~ADIvIsAvGk 267 (345)
T PLN02897 196 CTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT----KD-PEQ---ITRKADIVIAAAGI 267 (345)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC----CC-HHH---HHhhCCEEEEccCC
Confidence 46788887776543 36788654 5677778889999999999886554322 11 122 23567877765543
No 300
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=49.17 E-value=2e+02 Score=26.38 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=59.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHH--
Q 022176 166 ILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSW-- 243 (301)
Q Consensus 166 ~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~-- 243 (301)
.+++.+.... .+-++++++.....+.+.+..++.|..- .+..+-.+ +...+.+.+.+...|+++++|.. +.|
T Consensus 199 ~l~~a~~~~~-~~~~l~ivG~g~~~~~l~~~~~~~~l~~-~v~f~G~~--~~~~~~~~~~~~~~d~~v~~s~~--Egf~~ 272 (359)
T PRK09922 199 ELFDGLSQTT-GEWQLHIIGDGSDFEKCKAYSRELGIEQ-RIIWHGWQ--SQPWEVVQQKIKNVSALLLTSKF--EGFPM 272 (359)
T ss_pred HHHHHHHhhC-CCeEEEEEeCCccHHHHHHHHHHcCCCC-eEEEeccc--CCcHHHHHHHHhcCcEEEECCcc--cCcCh
Confidence 3444444332 2345555554444555655555554321 12222111 11112222223567888887752 222
Q ss_pred --HHhhhcccCCCceEEEEC--HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHccC
Q 022176 244 --VNLISDTEQWSNSVACIG--ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 299 (301)
Q Consensus 244 --~~~l~~~~~~~~~i~aIG--~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~ 299 (301)
++.+. -++++++.. ....+.+. .|..-.++ +.-+.++++++|.+.+.+++
T Consensus 273 ~~lEAma----~G~Pvv~s~~~~g~~eiv~-~~~~G~lv-~~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 273 TLLEAMS----YGIPCISSDCMSGPRDIIK-PGLNGELY-TPGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred HHHHHHH----cCCCEEEeCCCCChHHHcc-CCCceEEE-CCCCHHHHHHHHHHHHhCcc
Confidence 22221 256666654 22333333 34433344 34589999999999987764
No 301
>PRK05569 flavodoxin; Provisional
Probab=48.60 E-value=1.1e+02 Score=23.88 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=51.9
Q ss_pred EEEEcCCcChh----HHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChH---------HHHHHHHhh
Q 022176 181 VLYPASAKASN----EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS---------AVRSWVNLI 247 (301)
Q Consensus 181 vLi~rg~~~~~----~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~s---------av~~~~~~l 247 (301)
|+|..+.+..+ .+.+.+++.|.+| .++.....+ .. .+.++|.|+|-||. .+..|++.+
T Consensus 6 iiY~S~tGnT~~iA~~i~~~~~~~g~~v---~~~~~~~~~--~~----~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l 76 (141)
T PRK05569 6 IIYWSCGGNVEVLANTIADGAKEAGAEV---TIKHVADAK--VE----DVLEADAVAFGSPSMDNNNIEQEEMAPFLDQF 76 (141)
T ss_pred EEEECCCCHHHHHHHHHHHHHHhCCCeE---EEEECCcCC--HH----HHhhCCEEEEECCCcCCCcCChHHHHHHHHHh
Confidence 44554433333 4445555567654 344322111 11 24578999999973 367777776
Q ss_pred hcccCCCceEEEEC----------HHHHHHHHHcCCCe---eEecCCCCHHHHHHHHHHH
Q 022176 248 SDTEQWSNSVACIG----------ETTASAAKRLGLKN---VYYPTHPGLEGWVDSILEA 294 (301)
Q Consensus 248 ~~~~~~~~~i~aIG----------~~Ta~al~~~G~~~---~~v~~~ps~e~ll~ai~~~ 294 (301)
......+.+++.+| ....+.+++.|++. +.+...|+.+++ +.+.++
T Consensus 77 ~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~-~~~~~~ 135 (141)
T PRK05569 77 KLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAVNESPNKEEL-NSAKEL 135 (141)
T ss_pred hccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEEccCCCHHHH-HHHHHH
Confidence 53321233333221 12345566678864 233445665544 344443
No 302
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=48.57 E-value=2e+02 Score=25.60 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=100.1
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-HHHHHHHHHHHcCCC--
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTP-- 127 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-av~~f~~~l~~~~~~-- 127 (301)
|+|||.-...++.++++.|.+.|. +.+++..-... ..+ .......-+.+-+- ....+.+.+.+.+.+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~--v~~sv~t~~g~-------~~~-~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~v 70 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY--VIVSVATSYGG-------ELL-KPELPGLEVRVGRLGDEEGLAEFLRENGIDAV 70 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC--EEEEEEhhhhH-------hhh-ccccCCceEEECCCCCHHHHHHHHHhCCCcEE
Confidence 689999999999999999999997 33333221110 001 11111122233333 444444444443321
Q ss_pred ---CceEEE-EchhhHHHHHHHhhcccCCCceee------cC--C-----CCcHHHHHHHhccCCCCCCEEEEEcCCcCh
Q 022176 128 ---NVRIGV-VGAGTASIFEEVIQSSKCSLDVAF------SP--S-----KATGKILASELPKNGKKKCTVLYPASAKAS 190 (301)
Q Consensus 128 ---~~~i~a-vG~~Ta~~L~~~~~~~~~G~~~~~------~p--~-----~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~ 190 (301)
.-|++. |.....++.++. |+...- .+ . -.+.++.++.+.+. .+++|++.-|.+.-
T Consensus 71 IDATHPfA~~is~na~~a~~~~------~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~--~~~~iflttGsk~L 142 (249)
T PF02571_consen 71 IDATHPFAAEISQNAIEACREL------GIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKEL--GGGRIFLTTGSKNL 142 (249)
T ss_pred EECCCchHHHHHHHHHHHHhhc------CcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhc--CCCCEEEeCchhhH
Confidence 122221 334444555555 554310 00 0 13456666777553 34899999987765
Q ss_pred hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEE---CH----H
Q 022176 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI---GE----T 263 (301)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aI---G~----~ 263 (301)
+.+.. +...+ -.+|-++.+..... .-+..-++|..--|.+.+.=.+++++.+ +.+++. |. .
T Consensus 143 ~~f~~-~~~~~-----~r~~~RvLp~~~~~---~g~~~~~iia~~GPfs~e~n~al~~~~~---i~~lVtK~SG~~g~~e 210 (249)
T PF02571_consen 143 PPFVP-APLPG-----ERLFARVLPTPESA---LGFPPKNIIAMQGPFSKELNRALFRQYG---IDVLVTKESGGSGFDE 210 (249)
T ss_pred HHHhh-cccCC-----CEEEEEECCCcccc---CCCChhhEEEEeCCCCHHHHHHHHHHcC---CCEEEEcCCCchhhHH
Confidence 55544 33333 23444443333221 0124567788877777765555555432 222221 11 1
Q ss_pred HHHHHHHcCCCeeEe
Q 022176 264 TASAAKRLGLKNVYY 278 (301)
Q Consensus 264 Ta~al~~~G~~~~~v 278 (301)
=-+++++.|+.++++
T Consensus 211 Ki~AA~~lgi~vivI 225 (249)
T PF02571_consen 211 KIEAARELGIPVIVI 225 (249)
T ss_pred HHHHHHHcCCeEEEE
Confidence 124567889987665
No 303
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=48.49 E-value=1.6e+02 Score=28.18 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=80.2
Q ss_pred CchHHHHHHHHhCCCcEEEeceeE----------ee--eCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CC
Q 022176 60 GKNGKLIKALAKHRIDCLELPLIQ----------HA--QGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GT 126 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~----------~~--~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-~~ 126 (301)
.+-.++.+.|++.|+++..+|=+. .. +..+ ..+++ +.+......-|..++.+ ..+.+.+++. +.
T Consensus 171 ~D~~eik~lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~gg-t~lee-i~~~~~A~lniv~~~~~-~~~a~~Lee~~Gi 247 (417)
T cd01966 171 GDVEELKDIIEAFGLEPIILPDLSGSLDGHLADDWSPTTTGG-TTLED-IRQMGRSAATLAIGESM-RKAAEALEERTGV 247 (417)
T ss_pred HHHHHHHHHHHHcCCceEEecCcccccCCCCCCCccccCCCC-CcHHH-HHhhccCeEEEEECHHH-HHHHHHHHHHHCC
Confidence 355799999999999998887432 11 1111 12332 33556666666667664 5666767643 33
Q ss_pred CCceE-EEEch-hhHHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHhC
Q 022176 127 PNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNR 200 (301)
Q Consensus 127 ~~~~i-~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~~ 200 (301)
+-+.. .-+|- .|.+.|++.. ...|... |+... -+.+.+.+.+. ...++|+.+..+..-.-.+.+.|.+.
T Consensus 248 P~~~~~~p~G~~~T~~~L~~la--~~~g~~~---~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~l~~~L~El 322 (417)
T cd01966 248 PYYVFPSLTGLEAVDALIATLA--KLSGRPV---PEKIRRQRAQLQDAMLDGHFYLGGKRVAIALEPDLLAALSSFLAEM 322 (417)
T ss_pred CeeecCCCcchHHHHHHHHHHH--HHHCCCc---CHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCHHHHHHHHHHHHHC
Confidence 32211 12554 5777776652 1114332 32211 11233444321 12578988887666567799999999
Q ss_pred CCeeEEEee
Q 022176 201 GFEVVRLNT 209 (301)
Q Consensus 201 G~~v~~~~v 209 (301)
|.++..+.+
T Consensus 323 G~~~~~~~~ 331 (417)
T cd01966 323 GAEIVAAVA 331 (417)
T ss_pred CCEEEEEEE
Confidence 998865554
No 304
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=48.48 E-value=2.7e+02 Score=27.11 Aligned_cols=212 Identities=15% Similarity=0.158 Sum_probs=106.1
Q ss_pred chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEch-hh
Q 022176 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA-GT 138 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-~~~~~~i~avG~-~T 138 (301)
+..++...|++.|+++... + + .+ ..+++ +.+....+.-+..++.....+.+.+++. +.+-+.+--+|- .|
T Consensus 213 d~~el~~lL~~~Gl~v~~~----~-~-g~-~s~~e-i~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~~~~~~G~~~T 284 (457)
T TIGR01284 213 DLWVLKKYFERMGIQVLST----F-T-GN-GCYDE-LRWMHRAKLNVVRCARSANYIANELEERYGIPRLDIDFFGFEYC 284 (457)
T ss_pred hHHHHHHHHHHcCCeEEEE----E-C-CC-CCHHH-HHhccccCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCHHHH
Confidence 4467899999999999721 1 1 11 12222 3356777776666666666667777653 433222223564 46
Q ss_pred HHHHHHHhhcccCCCceeecCCCCcHHHHHH--------Hhcc--CCCCCCEEEEEcCCcChhHHHHHHH-hCCCeeEEE
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILAS--------ELPK--NGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRL 207 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~--------~l~~--~~~~~~~vLi~rg~~~~~~L~~~L~-~~G~~v~~~ 207 (301)
.+.|++.. ...|+. . ..+.+++ .|.. ....|+|+.+..+....-.+...|. +.|.+|..+
T Consensus 285 ~~~l~~ia--~~~g~~-----~--~~e~~i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~~~~~~l~~~l~~ElGmevv~~ 355 (457)
T TIGR01284 285 AKNLRKIG--EFFGIE-----E--RAERVIEEEMAKWKPELDWYKERLRGKKVWVWSGGPKLWHWPRPLEDELGMEVVAV 355 (457)
T ss_pred HHHHHHHH--HHhCCc-----h--hHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEE
Confidence 66666652 111432 1 1221111 1211 1136889988776655556888886 799988765
Q ss_pred eeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEe-cC----CC
Q 022176 208 NTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYY-PT----HP 282 (301)
Q Consensus 208 ~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v-~~----~p 282 (301)
.++.. .....+.+.+.+ ..+.+++-..... .+.+.+.+. ...++.-|..-...+++.|+..+-+ .. ..
T Consensus 356 ~~~~~--~~~~~~~~~~~~-~~~~~~i~d~~~~-e~~~~i~~~---~pDllig~~~~~~~a~k~gip~~~~~~~~~~~~~ 428 (457)
T TIGR01284 356 STKFG--HEDDYEKIIARV-REGTVIIDDPNEL-ELEEIIEKY---KPDIILTGIREGELAKKLGVPYINIHSYHNGPYI 428 (457)
T ss_pred EEEeC--CHHHHHHHHHhc-CCCeEEEeCCCHH-HHHHHHHhc---CCCEEEecCCcchhhhhcCCCEEEccccccCCcc
Confidence 44322 111112222222 2234544443322 222222221 2334444445555666777754321 11 23
Q ss_pred CHHHHHHHHHHHHH
Q 022176 283 GLEGWVDSILEALR 296 (301)
Q Consensus 283 s~e~ll~ai~~~~~ 296 (301)
..++.++.+.+..+
T Consensus 429 Gy~G~~~l~~~i~n 442 (457)
T TIGR01284 429 GFEGFVNLARDMYN 442 (457)
T ss_pred chhhHHHHHHHHHH
Confidence 56677766665543
No 305
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=48.43 E-value=28 Score=31.95 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=21.6
Q ss_pred eEEEe--CCCCchHHHHHHHHhCCCcEEEe
Q 022176 52 KVVVT--RERGKNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 52 ~Ilit--R~~~~~~~l~~~L~~~G~~v~~~ 79 (301)
+|++| ||..++..+++.|++.|+++..+
T Consensus 147 ~V~VtESRP~~eG~~~ak~L~~~gI~~~~I 176 (301)
T COG1184 147 KVIVTESRPRGEGRIMAKELRQSGIPVTVI 176 (301)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCceEEE
Confidence 67775 77778889999999999776644
No 306
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=48.36 E-value=2e+02 Score=25.72 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=77.2
Q ss_pred CCccEEEEeC-hHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCC-CCcHHHHHHHhccCCCCC
Q 022176 101 TIFDWIIITS-PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (301)
Q Consensus 101 ~~~d~IiftS-~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~-~~~~e~L~~~l~~~~~~~ 178 (301)
++.|.||... ..........+.+ .+++++..+..+. .+... .. .....+.+. ......+++.+.+.. .
T Consensus 67 ~~v~avig~~~s~~~~~~~~~~~~---~~iP~i~~~~~~~-~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~g--~ 136 (336)
T cd06326 67 DKVFALFGYVGTPTTAAALPLLEE---AGVPLVGPFTGAS-SLRDP---PD-RNVFNVRASYADEIAAIVRHLVTLG--L 136 (336)
T ss_pred cCcEEEEeCCCchhHHHHHHHHHH---cCCeEEEecCCcH-HhcCC---CC-CceEEeCCChHHHHHHHHHHHHHhC--C
Confidence 4788888642 2223334444444 3677777754432 23211 00 111112222 223445666665543 4
Q ss_pred CEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-HHHHHHHHhhhcc
Q 022176 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLISDT 250 (301)
Q Consensus 179 ~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~-sav~~~~~~l~~~ 250 (301)
++|.++..+.. ...+.+.+++.|.++.....|... ..+....+..+ ..+|+|++++. ..+-.+++.+++.
T Consensus 137 ~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~--~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i~~~~~~ 214 (336)
T cd06326 137 KRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERN--TADVAAAVAQLAAARPQAVIMVGAYKAAAAFIRALRKA 214 (336)
T ss_pred ceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCC--cccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHhc
Confidence 68877755432 345778889999887555445422 11122222222 35899999874 4577788887765
Q ss_pred cCCCceEEEEC
Q 022176 251 EQWSNSVACIG 261 (301)
Q Consensus 251 ~~~~~~i~aIG 261 (301)
+. +.+++..+
T Consensus 215 G~-~~~~~~~~ 224 (336)
T cd06326 215 GG-GAQFYNLS 224 (336)
T ss_pred CC-CCcEEEEe
Confidence 43 44544433
No 307
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=48.34 E-value=98 Score=26.38 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=46.8
Q ss_pred CCCeEEEe-CCC----CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH
Q 022176 49 SNPKVVVT-RER----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (301)
Q Consensus 49 ~g~~Ilit-R~~----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~ 123 (301)
.+.+|++. ... ...+.+.+.+++.|+++..++.++. .+.+.+. +.+...|.|+|+-.+..+ +.+.|.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~---~~~~~~~---~~l~~ad~I~~~GG~~~~-~~~~l~~ 100 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT---ANDPDVV---ARLLEADGIFVGGGNQLR-LLSVLRE 100 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC---CCCHHHH---HHHhhCCEEEEcCCcHHH-HHHHHHh
Confidence 35666654 333 3567788899999999998887765 2223333 346789999999988876 4555654
Q ss_pred c
Q 022176 124 A 124 (301)
Q Consensus 124 ~ 124 (301)
.
T Consensus 101 t 101 (210)
T cd03129 101 T 101 (210)
T ss_pred C
Confidence 3
No 308
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=48.21 E-value=91 Score=28.14 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=28.6
Q ss_pred EEEEChHHHHHHHHhhhcccCCCceEEEECHH-HHHHHHHcCCCe
Q 022176 232 VAVASPSAVRSWVNLISDTEQWSNSVACIGET-TASAAKRLGLKN 275 (301)
Q Consensus 232 I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~-Ta~al~~~G~~~ 275 (301)
-++||..+...++..... ..+++.||+. ..+.++.+|+..
T Consensus 73 ~i~TS~~at~~~l~~~~~----~~kv~viG~~~l~~~l~~~G~~~ 113 (269)
T COG0647 73 DIVTSGDATADYLAKQKP----GKKVYVIGEEGLKEELEGAGFEL 113 (269)
T ss_pred HeecHHHHHHHHHHhhCC----CCEEEEECCcchHHHHHhCCcEE
Confidence 578898888877665332 3678888874 447888889864
No 309
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=48.20 E-value=1.8e+02 Score=25.18 Aligned_cols=188 Identities=16% Similarity=0.167 Sum_probs=104.0
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEec---------------eeEeeeC-CCchHHHHHHhcCCCccEEEEeChHHH
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELP---------------LIQHAQG-PDTDRLSSVLNADTIFDWIIITSPEAG 114 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P---------------~~~~~~~-~d~~~l~~~l~~l~~~d~IiftS~~av 114 (301)
|+|+|.--..-+..+++.|.+.|.+++.+- ..-+.-. .+.+.|.++ .+.++|.+|..+.+-.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a--gi~~aD~vva~t~~d~ 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA--GIDDADAVVAATGNDE 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc--CCCcCCEEEEeeCCCH
Confidence 345555555556677777777777665432 1111111 122333322 3678999999888854
Q ss_pred HHH-HHHHH--HcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC------CC--CCEEEE
Q 022176 115 SVF-LEAWK--EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG------KK--KCTVLY 183 (301)
Q Consensus 115 ~~f-~~~l~--~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~------~~--~~~vLi 183 (301)
..+ +-.+. ..+.+.+-.=+-.+.-.+.+++. |+...+.|+...+..|...+.... .. ...++.
T Consensus 79 ~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~------g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~~~~~~~~~~~~ 152 (225)
T COG0569 79 VNSVLALLALKEFGVPRVIARARNPEHEKVLEKL------GADVIISPEKLAAKRLARLIVTPGALDVLELAGGDAEVIE 152 (225)
T ss_pred HHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHc------CCcEEECHHHHHHHHHHHHhcCCChheEEeecCCcceEEE
Confidence 443 33332 23455555566777778888888 988778888777777777664321 01 123332
Q ss_pred EcCCc----ChhHHHHHHHhCCCeeEEEeeeeee--eCCCCcHHHHHHcCCC-CEEEEEChHHHHHHHHhhhc
Q 022176 184 PASAK----ASNEIEEGLSNRGFEVVRLNTYTTE--PVHHVDQTVLKQALSI-PVVAVASPSAVRSWVNLISD 249 (301)
Q Consensus 184 ~rg~~----~~~~L~~~L~~~G~~v~~~~vY~~~--~~~~~~~~~~~~~~~~-d~I~ftS~sav~~~~~~l~~ 249 (301)
..-.. .+..|.+.=......+..+.+|+.. ...+..+.. +..- -.+++.++..++.|.+.+..
T Consensus 153 ~~v~~~~~~~g~~L~el~~~~~~~~~vvai~r~~~~~~~p~g~~~---l~~gD~l~v~~~~~~i~~~~~~~~~ 222 (225)
T COG0569 153 EKVAEDSPLAGKTLRELDLRLPYDVNVIAIKRGGNELIIPRGDTT---LEAGDRLIVIGAPEALREVEELLGG 222 (225)
T ss_pred EEecCCCccCCcCHHHhcccCCCCcEEEEEecCCCceecCCCCCE---ecCCCEEEEEEcHHHHHHHHHHhcc
Confidence 22222 2223333221222556778888864 222211211 2223 36788889999999887653
No 310
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.10 E-value=2e+02 Score=26.20 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=81.8
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc---CCCccEEEEeChH--HHH--HHHHHHHHc-CCCCceEEEEc
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPE--AGS--VFLEAWKEA-GTPNVRIGVVG 135 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~---l~~~d~IiftS~~--av~--~f~~~l~~~-~~~~~~i~avG 135 (301)
.-.+.+++.|+++..+-+-+.. ..+++.+.+.. ....|.|++--|- .++ .+++.+... ..|++.-.-.|
T Consensus 52 ~k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g 128 (285)
T PRK14189 52 NKVKACEDNGFHSLKDRYPADL---SEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAG 128 (285)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhh
Confidence 3455677889888765542221 22445555544 4667889888773 222 122222111 11233222222
Q ss_pred hhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeee
Q 022176 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.|- . |-. .+.| -|+.+.++.|.... ..|++++++..... ...|...|.+.|++|+.+.-. +
T Consensus 129 -----~l~-~------~~~-~~~P--cTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-t 192 (285)
T PRK14189 129 -----ALM-T------GQP-LFRP--CTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-T 192 (285)
T ss_pred -----Hhh-C------CCC-CCcC--CCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-C
Confidence 111 1 222 2444 36788877776553 36788776655444 788999999999998764321 1
Q ss_pred eeCCCCcHHHHHHcCCCCEEEEEChH
Q 022176 213 EPVHHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
. .+.+.+.+.|+|+...+.
T Consensus 193 ---~----~l~~~~~~ADIVV~avG~ 211 (285)
T PRK14189 193 ---R----DLAAHTRQADIVVAAVGK 211 (285)
T ss_pred ---C----CHHHHhhhCCEEEEcCCC
Confidence 1 122234678988888773
No 311
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=48.07 E-value=1.3e+02 Score=23.28 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=34.1
Q ss_pred CCCCEEEEEChH---------HHHHHHHhhhcccCCCceEEE--EC----------HHHHHHHHHcCCCee----EecCC
Q 022176 227 LSIPVVAVASPS---------AVRSWVNLISDTEQWSNSVAC--IG----------ETTASAAKRLGLKNV----YYPTH 281 (301)
Q Consensus 227 ~~~d~I~ftS~s---------av~~~~~~l~~~~~~~~~i~a--IG----------~~Ta~al~~~G~~~~----~v~~~ 281 (301)
..+|.|+|-||. .++.|++.+......+.+++. .| ....+.|++.|++.+ .+..+
T Consensus 44 ~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vfgt~g~~~~f~~~~~~~~~~l~~~g~~~v~~~~~~~~~ 123 (140)
T TIGR01753 44 LSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALFGSGDWGYEFCEAVDDWEERLKEAGATIIAEGLKVDGD 123 (140)
T ss_pred hcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEEecCCCCchhhHHHHHHHHHHHHCCCEEecCCeeeecC
Confidence 457877777655 334565555432212222322 22 234555666787642 23445
Q ss_pred CCHHHHHHHHHHHHH
Q 022176 282 PGLEGWVDSILEALR 296 (301)
Q Consensus 282 ps~e~ll~ai~~~~~ 296 (301)
|+.+++- .+.++.+
T Consensus 124 p~~~~~~-~~~~~~~ 137 (140)
T TIGR01753 124 PEEEDLD-KCREFAK 137 (140)
T ss_pred CCHHHHH-HHHHHHH
Confidence 6655544 3555543
No 312
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=48.01 E-value=1.7e+02 Score=25.38 Aligned_cols=78 Identities=13% Similarity=0.036 Sum_probs=46.3
Q ss_pred eCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC--C--CccEEEEeChHHHHHHHH-HHHHcCCCCce
Q 022176 56 TRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--T--IFDWIIITSPEAGSVFLE-AWKEAGTPNVR 130 (301)
Q Consensus 56 tR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l--~--~~d~IiftS~~av~~f~~-~l~~~~~~~~~ 130 (301)
.++-+...++.+.|+++|..+..+.- ... ....+.+.|+.+ . .+| .|+||.......+. .+.+.+.+..+
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN-~~~---~~~~~~~~L~~~gl~~~~~~-~Ii~s~~~~~~~l~~~~~~~~~~~~~ 97 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSN-SPR---NIFSLHKTLKSLGINADLPE-MIISSGEIAVQMILESKKRFDIRNGI 97 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeC-CCC---ChHHHHHHHHHCCCCccccc-eEEccHHHHHHHHHhhhhhccCCCce
Confidence 45567888999999999998876544 212 112222334333 2 234 56788766544443 33444445667
Q ss_pred EEEEchhh
Q 022176 131 IGVVGAGT 138 (301)
Q Consensus 131 i~avG~~T 138 (301)
++.||...
T Consensus 98 ~~~vGd~~ 105 (242)
T TIGR01459 98 IYLLGHLE 105 (242)
T ss_pred EEEeCCcc
Confidence 89999865
No 313
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=47.99 E-value=1.8e+02 Score=25.09 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=31.4
Q ss_pred HHHHHhcCC-CccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEchhhH
Q 022176 93 LSSVLNADT-IFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGTA 139 (301)
Q Consensus 93 l~~~l~~l~-~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG~~Ta 139 (301)
+.+.++.-. ..|.|+.++-.......+.+.+.++ +++.+++.+....
T Consensus 175 ~~~~l~~~~~~~~aI~~~~d~~a~g~~~a~~~~g~~ip~di~iig~d~~~~ 225 (273)
T cd06309 175 MEALLKAHGDDIDAVYAHNDEMALGAIQAIKAAGKKPGKDIKIVSIDGTKD 225 (273)
T ss_pred HHHHHHhCCCCccEEEECCcHHHHHHHHHHHHcCCCCCCCeEEEecCCCHH
Confidence 334443333 5888888877777777788877775 3677777776643
No 314
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=47.99 E-value=56 Score=26.98 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=25.9
Q ss_pred hCCCcEEEeceeEeeeC---C-----CchHHHHHHhcCCCccEEEEeChH
Q 022176 71 KHRIDCLELPLIQHAQG---P-----DTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 71 ~~G~~v~~~P~~~~~~~---~-----d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
+.|.++..+-+.++.+. . ..+.+....+++...|.|||.||.
T Consensus 29 ~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~ 78 (174)
T TIGR03566 29 RLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPV 78 (174)
T ss_pred hcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCc
Confidence 34777776655443111 0 123455555667889999999984
No 315
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=47.66 E-value=1.1e+02 Score=26.58 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=45.7
Q ss_pred ccccccccccccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCC-CccEE--EE
Q 022176 33 SRIQASSDATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWI--II 108 (301)
Q Consensus 33 ~~~~~~~~~~~~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~-~~d~I--if 108 (301)
+|.+. ..+.+++||||-..+ =+..+++.|.++|++++.+.. ..+..+.+...+...+ ...++ =+
T Consensus 3 ~~~~~--------~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r----~~~~~~~~~~~i~~~~~~~~~~~~Dl 70 (259)
T PRK08213 3 TVLEL--------FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSAR----KAEELEEAAAHLEALGIDALWIAADV 70 (259)
T ss_pred cchhh--------hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 56666 567899999997643 457889999999997654321 1111112222222111 11122 24
Q ss_pred eChHHHHHHHHHHHH
Q 022176 109 TSPEAGSVFLEAWKE 123 (301)
Q Consensus 109 tS~~av~~f~~~l~~ 123 (301)
++..+++.+++.+.+
T Consensus 71 ~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 71 ADEADIERLAEETLE 85 (259)
T ss_pred CCHHHHHHHHHHHHH
Confidence 778888877776654
No 316
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=47.54 E-value=1.2e+02 Score=28.93 Aligned_cols=56 Identities=27% Similarity=0.141 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCC-cHHHHHHc---CCCCEEEEE
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-DQTVLKQA---LSIPVVAVA 235 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~~~~~~~~---~~~d~I~ft 235 (301)
+|.+||++....=.+.+.+.++..|++|..+.+= +-+.. ++++.+.+ .+++.|.++
T Consensus 79 pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~---wg~~v~p~~v~~~L~~~~~~~~V~~v 138 (383)
T COG0075 79 PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVE---WGEAVDPEEVEEALDKDPDIKAVAVV 138 (383)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCC---CCCCCCHHHHHHHHhcCCCccEEEEE
Confidence 5789998888777788899999999887655542 22222 23333333 356667664
No 317
>PTZ00110 helicase; Provisional
Probab=47.17 E-value=2.1e+02 Score=28.50 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=23.8
Q ss_pred HHHHHhccCCCCCCE-EEEEcCCcChhHHHHHHHhCCCee
Q 022176 166 ILASELPKNGKKKCT-VLYPASAKASNEIEEGLSNRGFEV 204 (301)
Q Consensus 166 ~L~~~l~~~~~~~~~-vLi~rg~~~~~~L~~~L~~~G~~v 204 (301)
.|.+.+......+.+ ++|+......+.|.+.|+..|+.+
T Consensus 365 ~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~ 404 (545)
T PTZ00110 365 KLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPA 404 (545)
T ss_pred HHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcE
Confidence 344444333213345 455566666788999999888765
No 318
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=47.12 E-value=95 Score=27.85 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=17.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 166 ILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 166 ~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
.|+++|.+ .+..+.|+.-.... .+.+.+++.|++|..+
T Consensus 22 ~LA~~l~~---~g~~v~f~~~~~~~-~~~~~i~~~g~~v~~~ 59 (279)
T TIGR03590 22 TLARALHA---QGAEVAFACKPLPG-DLIDLLLSAGFPVYEL 59 (279)
T ss_pred HHHHHHHH---CCCEEEEEeCCCCH-HHHHHHHHcCCeEEEe
Confidence 34444532 23455554443322 3445566666554433
No 319
>PLN02891 IMP cyclohydrolase
Probab=46.85 E-value=2e+02 Score=28.67 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=77.4
Q ss_pred ccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC-----CC
Q 022176 103 FDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG-----KK 177 (301)
Q Consensus 103 ~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~-----~~ 177 (301)
--.|-..-+.++.-|.+.|.+. ++.|++-| +|++.|++. |+++.-+.+ +|+ +=+.|.... .-
T Consensus 24 rALISVsDKtgi~~fAk~L~~~---gveIiSTg-GTak~L~e~------Gi~v~~Vsd-~Tg--fPEiL~GRVKTLHPkI 90 (547)
T PLN02891 24 QALISLSDKTDLALLANGLQEL---GYTIVSTG-GTASALEAA------GVSVTKVEE-LTN--FPEMLDGRVKTLHPAV 90 (547)
T ss_pred EEEEEEecccCHHHHHHHHHHC---CCEEEEcc-hHHHHHHHc------CCceeeHHh-ccC--CchhhCCcccccCchh
Confidence 3456677889999999988874 68899998 589999999 998865532 221 111121100 00
Q ss_pred CCEEEEEcCCcChhHHHHHHHhCCCeeEE---Eeeeeee---eC-CCCcHHHHHH------------cC-CCCEEEEECh
Q 022176 178 KCTVLYPASAKASNEIEEGLSNRGFEVVR---LNTYTTE---PV-HHVDQTVLKQ------------AL-SIPVVAVASP 237 (301)
Q Consensus 178 ~~~vLi~rg~~~~~~L~~~L~~~G~~v~~---~~vY~~~---~~-~~~~~~~~~~------------~~-~~d~I~ftS~ 237 (301)
.+-||.-|.. +.=.+.|+++|+.... +.+|--. .. ....+++++. .+ --++.++++|
T Consensus 91 hgGILa~r~~---~~h~~~l~~~~I~~IDlVvVNLYPF~~tv~~~~~~~ee~IEnIDIGGpsmlRAAAKN~~~V~Vv~dP 167 (547)
T PLN02891 91 HGGILARRDQ---EHHMEALNEHGIGTIDVVVVNLYPFYDTVTSGGISFEDGVENIDIGGPAMIRAAAKNHKDVLVVVDP 167 (547)
T ss_pred hhhhhcCCCC---HHHHHHHHHcCCCceeeEEEeccChHHHHhcCCCCHHHHHHhccCCcHHHHHHHHhCCCCeEEECCH
Confidence 1223333332 2334668888876544 4445321 11 1111223222 12 3479999999
Q ss_pred HHHHHHHHhhhc
Q 022176 238 SAVRSWVNLISD 249 (301)
Q Consensus 238 sav~~~~~~l~~ 249 (301)
+-.+.+++.++.
T Consensus 168 ~DY~~vl~el~~ 179 (547)
T PLN02891 168 ADYPALLEYLKG 179 (547)
T ss_pred HHHHHHHHHHHc
Confidence 999999988865
No 320
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=46.81 E-value=1.2e+02 Score=22.53 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEchh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~-~~~~~~~i~avG~~ 137 (301)
.++.+.++++|.++ ++...+ ..++.. ...+|| +|+++|.-...+ +.+.+ ....++++..|++.
T Consensus 17 ~ki~~~~~~~~~~~------~v~~~~-~~~~~~---~~~~~D-iil~~Pqv~~~~-~~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 17 KKMKKAAEKRGIDA------EIEAVP-ESELEE---YIDDAD-VVLLGPQVRYML-DEVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHHHHHHCCCce------EEEEec-HHHHHH---hcCCCC-EEEEChhHHHHH-HHHHHHhccCCCcEEEcChH
Confidence 46677788889873 333322 122222 346788 557888766544 44443 33457888888775
No 321
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=46.69 E-value=53 Score=28.37 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=43.3
Q ss_pred CCCeEEEeCCC-----CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH
Q 022176 49 SNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (301)
Q Consensus 49 ~g~~IlitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~ 123 (301)
.+.+|++.... ...+++.+.+++.|++....+.+.-...++.+.+.+ .+...|.|+|+-.+..+ +.+.|..
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~---~l~~ad~I~~~GG~~~~-~~~~l~~ 103 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVA---RLRDADGIFFTGGDQLR-ITSALGG 103 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHH---HHHhCCEEEEeCCcHHH-HHHHHcC
Confidence 35666664433 346678888999998755544443222222233333 45789999999999876 4555543
No 322
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=46.29 E-value=64 Score=28.00 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=42.1
Q ss_pred HHHHHHHhC-CCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC-CCceEEEEch
Q 022176 64 KLIKALAKH-RIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT-PNVRIGVVGA 136 (301)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~-~~~~i~avG~ 136 (301)
-+.+.++++ |.++.... ......+ ...+.+.|+.-.+.|.|+.++-..+..+++.+.+.+. +++.+++.+.
T Consensus 143 g~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~al~~~g~~~dv~vvg~d~ 217 (270)
T cd06308 143 GFKEALSKYPKIKIVAQQ--DGDWLKEKAEEKMEELLQANPDIDLVYAHNDPMALGAYLAAKRAGREKEIKFIGIDG 217 (270)
T ss_pred HHHHHHHHCCCCEEEEec--CCCccHHHHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHHHHHcCCCCCcEEEEecC
Confidence 345567777 66544221 1111111 2344555544456888888888887778888888776 4667777754
No 323
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=46.26 E-value=1.1e+02 Score=25.95 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=44.6
Q ss_pred CeEEEe-CCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH---H----HHHHHH
Q 022176 51 PKVVVT-RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS---V----FLEAWK 122 (301)
Q Consensus 51 ~~Ilit-R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~---~----f~~~l~ 122 (301)
|+|+|. -.......+++.|+++|+++..++ .+ . ++..||.||++-+.... . +.+.+.
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~------~~--~-------~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~ 65 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITS------DP--E-------EILDADGIVLPGVGAFGAAMENLSPLRDVIL 65 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEEC------CH--H-------HHccCCEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 345554 344456799999999999887663 11 1 24689999998731111 1 112222
Q ss_pred HcCCCCceEEEEchhhHHHHHH
Q 022176 123 EAGTPNVRIGVVGAGTASIFEE 144 (301)
Q Consensus 123 ~~~~~~~~i~avG~~Ta~~L~~ 144 (301)
+....+.++++|.-+- +.|-+
T Consensus 66 ~~~~~~~PilgIC~G~-q~l~~ 86 (200)
T PRK13143 66 EAARSGKPFLGICLGM-QLLFE 86 (200)
T ss_pred HHHHcCCCEEEECHHH-HHHhh
Confidence 2112367887777653 44443
No 324
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=45.88 E-value=61 Score=29.71 Aligned_cols=62 Identities=10% Similarity=0.049 Sum_probs=41.8
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh
Q 022176 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (301)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~ 111 (301)
..|.+|+++.+......+...++..|+++..+|+-. ....|.+.+.+.+.+ .+.+.|+++++
T Consensus 72 ~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~i~~-~~~~~v~i~~~ 133 (356)
T cd06451 72 EPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPW-GEAVSPEEIAEALEQ-HDIKAVTLTHN 133 (356)
T ss_pred CCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCC-CCCCCHHHHHHHHhc-cCCCEEEEecc
Confidence 358899999875544446677888999999998632 122345667666632 35678888776
No 325
>PRK00170 azoreductase; Reviewed
Probab=45.87 E-value=29 Score=29.19 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=35.9
Q ss_pred HHHHHHhC--CCeeEEEeeeeeeeCCCC------------------------cHHHHHHcCCCCEEEEECh-------HH
Q 022176 193 IEEGLSNR--GFEVVRLNTYTTEPVHHV------------------------DQTVLKQALSIPVVAVASP-------SA 239 (301)
Q Consensus 193 L~~~L~~~--G~~v~~~~vY~~~~~~~~------------------------~~~~~~~~~~~d~I~ftS~-------sa 239 (301)
+.+.|++. |.+|..+.+|+...+... ..++.+.+...|.|||.|| ..
T Consensus 25 ~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~sP~y~~~~pa~ 104 (201)
T PRK00170 25 FIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAAPMYNFSIPTQ 104 (201)
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEeecccccCCcHH
Confidence 45667776 788888888765321100 0112334567899999997 67
Q ss_pred HHHHHHhhh
Q 022176 240 VRSWVNLIS 248 (301)
Q Consensus 240 v~~~~~~l~ 248 (301)
++.|++.+-
T Consensus 105 LK~~iDrv~ 113 (201)
T PRK00170 105 LKAYIDLIA 113 (201)
T ss_pred HHHHHHhhe
Confidence 788888753
No 326
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=45.81 E-value=2e+02 Score=26.00 Aligned_cols=89 Identities=12% Similarity=0.061 Sum_probs=50.4
Q ss_pred CcHHHHHHHhccCCCCCCEEEEEcCCc-----ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEE
Q 022176 162 ATGKILASELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV 234 (301)
Q Consensus 162 ~~~e~L~~~l~~~~~~~~~vLi~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~f 234 (301)
..+..+++.+... .-++|.++..+. ..+.+.+.+++.|++|.....|.......+....+..+ .+.|+|++
T Consensus 146 ~~~~a~~~~~~~~--~~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~ 223 (348)
T cd06350 146 SQALAIVALLKHF--GWTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVV 223 (348)
T ss_pred HHHHHHHHHHHHC--CCeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEE
Confidence 3456676666543 235666665443 24678888999998876555444321011112223332 35565554
Q ss_pred -EChHHHHHHHHhhhcccC
Q 022176 235 -ASPSAVRSWVNLISDTEQ 252 (301)
Q Consensus 235 -tS~sav~~~~~~l~~~~~ 252 (301)
.++..+..++..+.+.+.
T Consensus 224 ~~~~~~~~~~~~~a~~~g~ 242 (348)
T cd06350 224 FGDEDDALRLFCEAYKLGM 242 (348)
T ss_pred EeCcHHHHHHHHHHHHhCC
Confidence 567778888888777654
No 327
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=45.71 E-value=59 Score=25.75 Aligned_cols=34 Identities=9% Similarity=0.183 Sum_probs=21.6
Q ss_pred CCCccEEEEeChH--------HHHHHHHHHHHcCCCCceEEEEch
Q 022176 100 DTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 100 l~~~d~IiftS~~--------av~~f~~~l~~~~~~~~~i~avG~ 136 (301)
+..||.|+|-|+. .+..|++.+.. .+.+++++|-
T Consensus 48 ~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~---~~k~~avfgt 89 (140)
T TIGR01754 48 PENYDLVFLGTWTWERGRTPDEMKDFIAELGY---KPSNVAIFGT 89 (140)
T ss_pred hhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc---cCCEEEEEEc
Confidence 4578999998873 35566665533 3556666663
No 328
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.33 E-value=2.1e+02 Score=25.97 Aligned_cols=150 Identities=17% Similarity=0.075 Sum_probs=80.2
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc---CCCccEEEEeChH--HHH--HHHHHHHHc-CCCCceEEEEc
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPE--AGS--VFLEAWKEA-GTPNVRIGVVG 135 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~---l~~~d~IiftS~~--av~--~f~~~l~~~-~~~~~~i~avG 135 (301)
.-.+..++.|+++..+-+-+.. ..+++.+.+++ ....|.|++--|- .++ ..++.+... ..|++.-+-.|
T Consensus 51 ~k~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g 127 (281)
T PRK14183 51 MKAKACDRVGIYSITHEMPSTI---SQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVG 127 (281)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhh
Confidence 3345667789887654332221 22344444433 4678899988873 222 122222111 11233222222
Q ss_pred hhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEE-cCCcChhHHHHHHHhCCCeeEEEeeeee
Q 022176 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.|- . |- ..+.| -|+.+.++.|.... ..|++++++ ||..-...|...|.++|++|+.+.- .
T Consensus 128 -----~l~-~------g~-~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs--~ 190 (281)
T PRK14183 128 -----RLV-T------GL-DGFVP--CTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHI--F 190 (281)
T ss_pred -----HHh-c------CC-CCCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC--C
Confidence 111 1 32 22444 36888887776543 368887765 4556677899999999998864422 1
Q ss_pred eeCCCCcHHHHHHcCCCCEEEEEChHH
Q 022176 213 EPVHHVDQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~I~ftS~sa 239 (301)
. ++ +.+...+.|+|+-..+..
T Consensus 191 T--~~----l~~~~~~ADIvV~AvGkp 211 (281)
T PRK14183 191 T--KD----LKAHTKKADIVIVGVGKP 211 (281)
T ss_pred C--cC----HHHHHhhCCEEEEecCcc
Confidence 1 11 112235678887766543
No 329
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=45.22 E-value=2e+02 Score=24.64 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=32.0
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHHHHH---HhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILAS---ELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~---~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
..+++++. |+.+.+.....+.+...+ .+.... -.-+++. +....+...+.|.+.|+.+..+.
T Consensus 21 ~~~~~~~~------g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiii~-~~~~~~~~~~~l~~~~ipvV~~~ 85 (268)
T cd06298 21 IDDIATMY------KYNIILSNSDNDKEKELKVLNNLLAKQ--VDGIIFM-GGKISEEHREEFKRSPTPVVLAG 85 (268)
T ss_pred HHHHHHHc------CCeEEEEeCCCCHHHHHHHHHHHHHhc--CCEEEEe-CCCCcHHHHHHHhcCCCCEEEEc
Confidence 45566777 887766544444443323 333221 1234443 33334456677777787765443
No 330
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=45.20 E-value=1.3e+02 Score=26.28 Aligned_cols=123 Identities=11% Similarity=0.124 Sum_probs=60.7
Q ss_pred HHHHHHHhccCC--CCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH--
Q 022176 164 GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-- 239 (301)
Q Consensus 164 ~e~L~~~l~~~~--~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sa-- 239 (301)
.+.+++.+.... ..+-++++.........+.+...+.|... .+..+.. .+++.+.+...|+++++|...
T Consensus 193 ~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~-~v~~~g~------~~~~~~~~~~ad~~i~ps~~e~~ 265 (348)
T cd03820 193 FDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLED-RVILLGF------TKNIEEYYAKASIFVLTSRFEGF 265 (348)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCC-eEEEcCC------cchHHHHHHhCCEEEeCcccccc
Confidence 444555554322 13345666655555555655555555321 1111111 122333346789888887431
Q ss_pred HHHHHHhhhcccCCCceEEEEC-HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 240 VRSWVNLISDTEQWSNSVACIG-ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 240 v~~~~~~l~~~~~~~~~i~aIG-~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
=..+++.+. -++++++.- ....+.+.+.|. .-++.+..+.+++.++|.+.+.++
T Consensus 266 ~~~~~Ea~a----~G~Pvi~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 266 PMVLLEAMA----FGLPVISFDCPTGPSEIIEDGV-NGLLVPNGDVEALAEALLRLMEDE 320 (348)
T ss_pred CHHHHHHHH----cCCCEEEecCCCchHhhhccCc-ceEEeCCCCHHHHHHHHHHHHcCH
Confidence 011222222 256666542 222333434342 223346678899999999987654
No 331
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=45.18 E-value=1.2e+02 Score=22.04 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred EEEeCCCCchHHHHHHHHhCCC-cEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe---ChHHHHHHHHHHHHcCCCC
Q 022176 53 VVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT---SPEAGSVFLEAWKEAGTPN 128 (301)
Q Consensus 53 IlitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift---S~~av~~f~~~l~~~~~~~ 128 (301)
+++-........+.+.|+..|+ ++. ...+..++.+.+ .-..+|.|+.- .......+++.+...+ ++
T Consensus 2 livd~~~~~~~~l~~~l~~~~~~~v~--------~~~~~~~~~~~~-~~~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~ 71 (112)
T PF00072_consen 2 LIVDDDPEIRELLEKLLERAGYEEVT--------TASSGEEALELL-KKHPPDLIIIDLELPDGDGLELLEQIRQIN-PS 71 (112)
T ss_dssp EEEESSHHHHHHHHHHHHHTTEEEEE--------EESSHHHHHHHH-HHSTESEEEEESSSSSSBHHHHHHHHHHHT-TT
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEE--------EECCHHHHHHHh-cccCceEEEEEeeecccccccccccccccc-cc
Q ss_pred ceEEEEchhhH----HHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 129 VRIGVVGAGTA----SIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 129 ~~i~avG~~Ta----~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
.++++++.... ..+.+. |+.- +...+.+.+.|.+.+.
T Consensus 72 ~~ii~~t~~~~~~~~~~~~~~------g~~~-~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 72 IPIIVVTDEDDSDEVQEALRA------GADD-YLSKPFSPEELRAAIN 112 (112)
T ss_dssp SEEEEEESSTSHHHHHHHHHT------TESE-EEESSSSHHHHHHHHH
T ss_pred ccEEEecCCCCHHHHHHHHHC------CCCE-EEECCCCHHHHHHhhC
No 332
>PF02547 Queuosine_synth: Queuosine biosynthesis protein; InterPro: IPR003699 This entry represents the queuosine biosynthesis proteins QueA. Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes []. Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (QueA) catalyses the formation of the 2,3-epoxy-4,5-dihydroxycyclopentane ring of the Q precursor epoxyqueuosine (oQ). S-adenosyl-L-methionine (AdoMet) reacts with 7-aminomethyl-7-deazaguanine of tRNA at position 34 to yield adenine, methionine, and a modified tRNA with oQ at position 34. QueA consists of two domains: domain 1 has 3 layers alpha/beta/alpha, while domain 2 is a closed beta-barrel with Greek-key topology [].; GO: 0016740 transferase activity, 0016853 isomerase activity, 0008616 queuosine biosynthetic process; PDB: 1WDI_A 1VKY_B 1YY3_A.
Probab=45.01 E-value=1.1e+02 Score=28.75 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=46.8
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeee----eCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccC
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTE----PVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ 252 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~----~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~ 252 (301)
.+.|.-|....- .+.|.+.|+++|+++..+-++-=. |+. .+.+ +......=.+.-+..+++.+-+.-.+
T Consensus 173 ~GSvAAPTAGLHFt~~ll~~l~~kGv~~a~vTLHVG~GTF~pV~--~e~i-~~H~mh~E~~~I~~~ta~~i~~ak~~--- 246 (341)
T PF02547_consen 173 PGSVAAPTAGLHFTEELLERLKAKGVEIAFVTLHVGLGTFRPVR--VEDI-EEHKMHSEYYEIPEETAEAINKAKAE--- 246 (341)
T ss_dssp -------SGGGG--HHHHHHHHHHTEEEEEEEEEECGGGG------------------EEEEE-HHHHHHHHHHHHT---
T ss_pred CCeEeCCCCCCCCCHHHHHHHHHCCCeEEEEEEEeccCcccccC--cCcc-cCCCCcceEEEECHHHHHHHHHHHHh---
Confidence 345666655444 678999999999988777664322 111 1111 11223345667788888888655332
Q ss_pred CCceEEEECHHHHHHHHHc
Q 022176 253 WSNSVACIGETTASAAKRL 271 (301)
Q Consensus 253 ~~~~i~aIG~~Ta~al~~~ 271 (301)
+-+++|+|.++.++|+..
T Consensus 247 -G~RViAVGTT~vRaLEsa 264 (341)
T PF02547_consen 247 -GGRVIAVGTTVVRALESA 264 (341)
T ss_dssp -T--EEEESHHHHHHHHHH
T ss_pred -CCcEEEEccHHHHHHhhh
Confidence 578999999999999985
No 333
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=44.98 E-value=1.4e+02 Score=27.89 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=56.9
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeee----eCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccC
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTE----PVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ 252 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~----~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~ 252 (301)
.+.|.-|....- .+.|.+.|+++|+++..+-++-=. |+.. +. +++.....=...-|.++++.+...-..
T Consensus 173 ~GsVAAPTAGLHFt~~ll~~L~~kGv~~a~vTLHVG~GTF~PV~~--ed-i~~H~mH~E~~~I~~~ta~~i~~ak~~--- 246 (342)
T PRK00147 173 PGAVAAPTAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVRV--ED-IEEHKMHSEWYEVPQETADAINAAKAR--- 246 (342)
T ss_pred CCceecCCCccCCCHHHHHHHHHCCCcEEEEEEeecCCCCcCccc--Cc-cccCCcccEEEEECHHHHHHHHHHHHc---
Confidence 356666655444 678999999999998777665321 1111 11 111223445667788888887654332
Q ss_pred CCceEEEECHHHHHHHHHc
Q 022176 253 WSNSVACIGETTASAAKRL 271 (301)
Q Consensus 253 ~~~~i~aIG~~Ta~al~~~ 271 (301)
+-+|+|+|.++.++|+..
T Consensus 247 -G~rIiAVGTT~vRaLEsa 264 (342)
T PRK00147 247 -GGRVIAVGTTSVRTLESA 264 (342)
T ss_pred -CCeEEEEcccchhhHHHH
Confidence 568999999999999974
No 334
>PRK12742 oxidoreductase; Provisional
Probab=44.89 E-value=1.3e+02 Score=25.51 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=25.3
Q ss_pred CCCCCeEEEeCCC-CchHHHHHHHHhCCCcEEE
Q 022176 47 SNSNPKVVVTRER-GKNGKLIKALAKHRIDCLE 78 (301)
Q Consensus 47 ~l~g~~IlitR~~-~~~~~l~~~L~~~G~~v~~ 78 (301)
++.|++||||-.. .=+..+++.|.++|+++..
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~ 35 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRF 35 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 4678999999764 3557899999999998763
No 335
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.84 E-value=1.6e+02 Score=26.93 Aligned_cols=151 Identities=10% Similarity=0.036 Sum_probs=78.9
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc---CCCccEEEEeChH--HHH--HHHHHHHHcCCCCceEEEEch
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPE--AGS--VFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~---l~~~d~IiftS~~--av~--~f~~~l~~~~~~~~~i~avG~ 136 (301)
.-.+.+++.|+++..+-+-... ..+++.+.+++ ....|.|++--|- .++ ..++.+. +..-+=++.+
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~~---~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~----p~KDVDGl~~ 124 (294)
T PRK14187 52 NKQRKAEMLGLRSETILLPSTI---SESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTID----PEKDVDGFHN 124 (294)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccC----cccCcccCCh
Confidence 3455677889888755442211 22344444433 4567889888773 222 1122111 1111222222
Q ss_pred hhHHHHHHHhhcccCCCc-eeecCCCCcHHHHHHHhccCC--CCCCEEEE-EcCCcChhHHHHHHHhCCCeeEEEeeeee
Q 022176 137 GTASIFEEVIQSSKCSLD-VAFSPSKATGKILASELPKNG--KKKCTVLY-PASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~-~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi-~rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.-...|- . |-. ..+.| -|+.+.++.|.... ..|+++++ =|+..-...|...|.++|+.|+.+.-+.
T Consensus 125 ~n~g~l~-~------g~~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T- 194 (294)
T PRK14187 125 ENVGRLF-T------GQKKNCLIP--CTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT- 194 (294)
T ss_pred hhHHHHh-C------CCCCCCccC--cCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC-
Confidence 2222221 1 221 22444 36778777776543 36778655 5666667889999999999887554432
Q ss_pred eeCCCCcHHHHHHcCCCCEEEEEChH
Q 022176 213 EPVHHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
.+ +.+...+.|+|+-.-+.
T Consensus 195 ---~~----l~~~~~~ADIvVsAvGk 213 (294)
T PRK14187 195 ---RD----LADYCSKADILVAAVGI 213 (294)
T ss_pred ---CC----HHHHHhhCCEEEEccCC
Confidence 11 11123467777765544
No 336
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=44.59 E-value=1.1e+02 Score=26.70 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=87.1
Q ss_pred ccEEEE-eChHHHHHHHHHHHHcCCC---CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCC
Q 022176 103 FDWIII-TSPEAGSVFLEAWKEAGTP---NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKK 178 (301)
Q Consensus 103 ~d~Iif-tS~~av~~f~~~l~~~~~~---~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~ 178 (301)
.|.+++ |...-.+.+...+.+++.. ..+.-..|..+.++++..+ ...+...+.+++..+..+...
T Consensus 17 ~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~---------~~~~dp~s~ee~~~e~~~~~~-- 85 (222)
T KOG2914|consen 17 MDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFV---------KKLPDPVSREEFNKEEEEILD-- 85 (222)
T ss_pred cCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHH---------hhcCCCCCHHHHHHHHHHHHH--
Confidence 444444 4444445555666666531 4555689999999988772 223344556665555433221
Q ss_pred CEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH----cCCCCEEEEEChHHHHHH-------HHhh
Q 022176 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSW-------VNLI 247 (301)
Q Consensus 179 ~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~----~~~~d~I~ftS~sav~~~-------~~~l 247 (301)
+.+-......|.+.|.+.|..+|+.+--+ .+..... .+...+. +..++.+++-....++.. +...
T Consensus 86 ~~~~~~~~~PGa~kLv~~L~~~gip~ala---t~s~~~~-~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~ 161 (222)
T KOG2914|consen 86 RLFMNSILMPGAEKLVNHLKNNGIPVALA---TSSTSAS-FELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAA 161 (222)
T ss_pred HhccccccCCcHHHHHHHHHhCCCCeeEE---ecCCccc-HHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHH
Confidence 12222222337888999999999765322 2221111 1111111 234555555333333333 3333
Q ss_pred hcccC---CCceEEEECHHHHHHHHHcCCCeeEecC
Q 022176 248 SDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPT 280 (301)
Q Consensus 248 ~~~~~---~~~~i~aIG~~Ta~al~~~G~~~~~v~~ 280 (301)
+..+. ..+.++-=.+..-+++...|.+++.+++
T Consensus 162 ~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 162 KRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred HhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 32221 2344455577888999999999998888
No 337
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.37 E-value=1.1e+02 Score=26.44 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=41.7
Q ss_pred HHHHHHHHhC-CCcEEEeceeEeeeC-CC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC-CceEEEEchh
Q 022176 63 GKLIKALAKH-RIDCLELPLIQHAQG-PD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~-G~~v~~~P~~~~~~~-~d-~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~-~~~i~avG~~ 137 (301)
.-+.+.++++ |..+.. ....... .+ ...+.+.+..-..+|+|++.|-..+..+++.+.+.+.. ++.+++.+..
T Consensus 143 ~gf~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~~l~~~g~~~di~vig~d~~ 219 (273)
T cd06310 143 EGFLEGLKEYPGIEIVA--TQYSDSDYAKALDITEDLLTANPDLKGIFGANEGSAVGAARAVRQAGKAGKVKVVGFDAS 219 (273)
T ss_pred HHHHHHHHhCCCcEEEe--cccCCcCHHHHHHHHHHHHHhCCCceEEEecCchhHHHHHHHHHhcCCCCCeEEEEeCCC
Confidence 3455677777 665543 1111100 01 12333444333458899888888777788888887764 5666666654
No 338
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=44.35 E-value=1.4e+02 Score=28.29 Aligned_cols=69 Identities=13% Similarity=-0.037 Sum_probs=44.5
Q ss_pred CcHHHHHHHhccCC--CCCCEEEE-EcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChH
Q 022176 162 ATGKILASELPKNG--KKKCTVLY-PASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 162 ~~~e~L~~~l~~~~--~~~~~vLi-~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
-|+.+.++.|.... ..|+++++ =|+..-...|...|.++|+.|+.+.-.. . ...+ ...+.|+|+-.-+.
T Consensus 213 CTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T----~-nl~~---~~r~ADIVIsAvGk 284 (364)
T PLN02616 213 CTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----K-NPEE---ITREADIIISAVGQ 284 (364)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC----C-CHHH---HHhhCCEEEEcCCC
Confidence 46788877776543 36788654 5666677889999999999886654321 1 1111 23567877766544
No 339
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=44.30 E-value=2.8e+02 Score=28.00 Aligned_cols=100 Identities=10% Similarity=0.029 Sum_probs=59.8
Q ss_pred CEEEEEcCCcChhHHHHHHHhCCCeeEEEeeee------------eeeCCCCcHHHHHH--cCCCCEEEEEChHHHHHHH
Q 022176 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT------------TEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWV 244 (301)
Q Consensus 179 ~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~------------~~~~~~~~~~~~~~--~~~~d~I~ftS~sav~~~~ 244 (301)
.+|+++....-...+.+.|.++|.++.-++.=. ...-+....+.+++ ..+.++++.+..+.-.+..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~ 480 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK 480 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence 467777776667778888888877664443210 01111122234444 3578888888777655542
Q ss_pred --HhhhcccCCCceEE--EECHHHHHHHHHcCCCeeEecC
Q 022176 245 --NLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPT 280 (301)
Q Consensus 245 --~~l~~~~~~~~~i~--aIG~~Ta~al~~~G~~~~~v~~ 280 (301)
...++.. .+.+++ +-.+.-++.+++.|.+.+ +++
T Consensus 481 i~~~~r~~~-p~~~IiaRa~~~~~~~~L~~~Ga~~v-v~e 518 (601)
T PRK03659 481 IVELCQQHF-PHLHILARARGRVEAHELLQAGVTQF-SRE 518 (601)
T ss_pred HHHHHHHHC-CCCeEEEEeCCHHHHHHHHhCCCCEE-Ecc
Confidence 3333322 244444 568899999999999874 355
No 340
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=44.20 E-value=98 Score=26.88 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC-CceEEEEchhh
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~----~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~-~~~i~avG~~T 138 (301)
-+.+.++++|.++... .. ...+. ..+.+.|..-..+|.|+..+-.....+++.+.+.+.. ++.++..+...
T Consensus 141 gf~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~~~~~al~~~g~~~di~vig~d~~~ 216 (271)
T cd06314 141 GIKDAIKDSKIEIVDT--RG--DEEDFAKAKSNAEDALNAHPDLKCMFGLYAYNGPAIAEAVKAAGKLGKVKIVGFDEDP 216 (271)
T ss_pred HHHHHHhcCCcEEEEE--ec--CccCHHHHHHHHHHHHHhCCCccEEEecCCccHHHHHHHHHHcCCCCceEEEEeCCCH
Confidence 3456666777654331 11 11111 2334444333456777665555555566677766653 56666666543
No 341
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=44.16 E-value=3.1e+02 Score=26.58 Aligned_cols=216 Identities=14% Similarity=0.117 Sum_probs=105.5
Q ss_pred CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEc-hh
Q 022176 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-AG 137 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~-~~~~~~~i~avG-~~ 137 (301)
.+..++...|++.|+++... .+. + ..+++ +.+......-+..++.....+.+.+++ .+.+-+...-+| ..
T Consensus 210 ~d~~el~~lL~~~Gl~v~~~-----~~~-~-~s~ee-i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~G~~~ 281 (456)
T TIGR01283 210 GEFWHVKPLLEKLGIRVLAT-----ITG-D-SRYAE-VQTAHRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFYGIED 281 (456)
T ss_pred ccHHHHHHHHHHcCCeEEEE-----eCC-C-CcHHH-HHhcccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCCcHHH
Confidence 35569999999999999852 111 1 12222 335566666666666665666777754 343322211255 34
Q ss_pred hHHHHHHHhhcccCCCce--eecCCCC--cHHHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeee
Q 022176 138 TASIFEEVIQSSKCSLDV--AFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~--~~~p~~~--~~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~ 211 (301)
|.+.|++.. ...|... ..+++.. .-+.+...|... ...|+++.+..+....-.+.+.|.+.|.+|..+.++.
T Consensus 282 T~~~L~~Ia--~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~ 359 (456)
T TIGR01283 282 TSKALRDIA--DLFGDEELLKRTEELIAREEAKIRPALEPYRERLKGKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQK 359 (456)
T ss_pred HHHHHHHHH--HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeec
Confidence 777777651 0013110 0011000 011122233221 1267888876665555568999999999986554332
Q ss_pred eeeCCCCcHHHHHHcCCCCEEEEECh--HHHHHHHHhhhcccCCCceEEEEC-HHHHHHHHHcCCCeeEec-----CCCC
Q 022176 212 TEPVHHVDQTVLKQALSIPVVAVASP--SAVRSWVNLISDTEQWSNSVACIG-ETTASAAKRLGLKNVYYP-----THPG 283 (301)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~d~I~ftS~--sav~~~~~~l~~~~~~~~~i~aIG-~~Ta~al~~~G~~~~~v~-----~~ps 283 (301)
.. ..+.+. +......+.+++..+ ..+..+++..+ ..+ .|| ......+.+.|+..+.+. ....
T Consensus 360 ~~--~~d~~~-l~~~~~~~~~v~~~~d~~e~~~~i~~~~------pDl-~ig~~~~~~~a~k~giP~i~~~~~~~~p~~G 429 (456)
T TIGR01283 360 GT--EEDYAR-IRELMGEGTVMLDDANPRELLKLLLEYK------ADL-LIAGGKERYTALKLGIPFCDINHEREHPYAG 429 (456)
T ss_pred CC--HHHHHH-HHHHcCCCeEEEeCCCHHHHHHHHhhcC------CCE-EEEccchHHHHHhcCCCEEEcccccCCCCcc
Confidence 21 111112 222223355555533 44444433322 223 344 334444567787654332 1234
Q ss_pred HHHHHHHHHHHH
Q 022176 284 LEGWVDSILEAL 295 (301)
Q Consensus 284 ~e~ll~ai~~~~ 295 (301)
.++.+..+.+..
T Consensus 430 y~G~~~l~~~i~ 441 (456)
T TIGR01283 430 YDGMVEFAREVD 441 (456)
T ss_pred hhhHHHHHHHHH
Confidence 566665555443
No 342
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=44.09 E-value=3.2e+02 Score=26.71 Aligned_cols=213 Identities=11% Similarity=0.084 Sum_probs=108.7
Q ss_pred CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEch-h
Q 022176 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA-G 137 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-~~~~~~i~avG~-~ 137 (301)
.+..++...|++.|+++... + . .+ ..+++ +.+..+..+-+..++.+.....+++++. +.+-+.+--+|. .
T Consensus 220 gd~~eik~lL~~~Gi~v~~~--~--s--g~-~t~~~-i~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~~~Gi~~ 291 (466)
T TIGR01282 220 GDAWESRILLEEIGLRVVAQ--W--S--GD-GTLNE-MENAPKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFFGPTK 291 (466)
T ss_pred ccHHHHHHHHHHcCCeEEEE--E--C--CC-CCHHH-HHhcccCCEEEEEChHHHHHHHHHHHHHhCCceEeCCCCCHHH
Confidence 45678999999999998732 2 1 11 12322 3356667777777777666666777653 333111112553 4
Q ss_pred hHHHHHHHhhcccCCCceeecCCCC-----cHHHHHHHhcc---CCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEee
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKA-----TGKILASELPK---NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~-----~~e~L~~~l~~---~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (301)
|.+.|++.. .+.|.. +|+.. .-++++..+.+ ....|+|+++..|......+...|++.|.++...-+
T Consensus 292 T~~~Lr~ia--~~~g~~---i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~ 366 (466)
T TIGR01282 292 IAESLRKIA--EFFDDE---IKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGY 366 (466)
T ss_pred HHHHHHHHH--HHHCch---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEee
Confidence 667777652 111321 12110 00112222211 123789998887766667788899999999853333
Q ss_pred eeeeeCCCCcHHHHHHcCCCCEEEEECh--HHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEe-cCC---C-
Q 022176 210 YTTEPVHHVDQTVLKQALSIPVVAVASP--SAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYY-PTH---P- 282 (301)
Q Consensus 210 Y~~~~~~~~~~~~~~~~~~~d~I~ftS~--sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v-~~~---p- 282 (301)
+ .. .....+...+.+.. +.+++-.+ ..+..++... ...++.-|..-.-.+++.|+.-+-+ ..+ |
T Consensus 367 ~-~~-~~~~~~~~~~~~~~-~~~i~~~~d~~el~~~i~~~------~pDl~ig~~~~~~~a~k~gIP~~~~~~~~~~~~~ 437 (466)
T TIGR01282 367 E-FA-HNDDYERTTKYMKD-GTLIYDDVTHYEFEEFVEKL------KPDLVGSGIKEKYVFQKMGVPFRQMHSWDYSGPY 437 (466)
T ss_pred e-cC-CHHHHHHHHHhcCC-CeEEeeCCCHHHHHHHHHHh------CCCEEEecCCccceeeecCCCccccccccccCcc
Confidence 1 11 11122223333333 55555443 3444443332 2344544555555566677764322 122 2
Q ss_pred -CHHHHHHHHHHH
Q 022176 283 -GLEGWVDSILEA 294 (301)
Q Consensus 283 -s~e~ll~ai~~~ 294 (301)
..+++++.+.+.
T Consensus 438 ~Gy~G~~~l~~~i 450 (466)
T TIGR01282 438 HGYDGFAIFARDM 450 (466)
T ss_pred hhHhHHHHHHHHH
Confidence 556666654443
No 343
>PRK11249 katE hydroperoxidase II; Provisional
Probab=43.77 E-value=2.8e+02 Score=28.99 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCcCh----hHHHHHHHhCCCeeEEEeeeeeeeCCCC------cHHHHHHc--CCCCEEEEEChH-HHHH
Q 022176 176 KKKCTVLYPASAKAS----NEIEEGLSNRGFEVVRLNTYTTEPVHHV------DQTVLKQA--LSIPVVAVASPS-AVRS 242 (301)
Q Consensus 176 ~~~~~vLi~rg~~~~----~~L~~~L~~~G~~v~~~~vY~~~~~~~~------~~~~~~~~--~~~d~I~ftS~s-av~~ 242 (301)
..+++|.++-+++.. ..+.+.|++.|+.|..+..-. .++... ....+... ..+|+|++.... .++.
T Consensus 595 ~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~-G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~ 673 (752)
T PRK11249 595 IKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRM-GEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIAD 673 (752)
T ss_pred ccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCC-CeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHH
Confidence 367899888887654 367788999998776654311 111100 00111111 258999998763 3333
Q ss_pred HHH------hhhcccCCCceEEEECHHHHHHHHHcCCCe----eEecCCCCHHHHHHHHHHHHHccCC
Q 022176 243 WVN------LISDTEQWSNSVACIGETTASAAKRLGLKN----VYYPTHPGLEGWVDSILEALREHGH 300 (301)
Q Consensus 243 ~~~------~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~----~~v~~~ps~e~ll~ai~~~~~~~~~ 300 (301)
+.. .+.+.......|.++|.. ...|.+.|+.. -++....+.+.+++...+.+..|+.
T Consensus 674 L~~d~~al~fL~eaykHgK~IAAiCaG-~~LLaaAGL~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~ 740 (752)
T PRK11249 674 LADNGDARYYLLEAYKHLKPIALAGDA-RKLKAALKLPDQGEEGLVEADSADGSFMDELLTAMAAHRV 740 (752)
T ss_pred HhhCHHHHHHHHHHHHcCCEEEEeCcc-HHHHHhcCCCCCCCCeEEecCCccHHHHHHHHHHHHhcCC
Confidence 321 122111123456666643 35667788822 2333334556666667777776653
No 344
>PRK01355 azoreductase; Reviewed
Probab=43.68 E-value=52 Score=27.91 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=35.0
Q ss_pred HHHHHHHh--CCCeeEEEeeeeeeeCC--------------CCcHHHHHHcCCCCEEEEECh-------HHHHHHHHhh
Q 022176 192 EIEEGLSN--RGFEVVRLNTYTTEPVH--------------HVDQTVLKQALSIPVVAVASP-------SAVRSWVNLI 247 (301)
Q Consensus 192 ~L~~~L~~--~G~~v~~~~vY~~~~~~--------------~~~~~~~~~~~~~d~I~ftS~-------sav~~~~~~l 247 (301)
.+.+.+++ .|.+|..+.+|+...+. +...++.+.+...|.|||.|| ..+++|++.+
T Consensus 25 ~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~sP~y~~~ipa~LK~~iDrv 103 (199)
T PRK01355 25 KFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDKVVISCPMTNFNVPATLKNYLDHI 103 (199)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCEEEEEcCccccCChHHHHHHHHHH
Confidence 35556666 35778888887653210 111223344568899999997 5677787775
No 345
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=43.61 E-value=2.1e+02 Score=25.54 Aligned_cols=152 Identities=11% Similarity=0.048 Sum_probs=84.1
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~ 143 (301)
-....+++.|.+..+.|+ ++.+ .+.....+.+..+ ++..+-+|-|.=... ++++.+.. .+++
T Consensus 23 ~hn~~~~~~gl~~~y~~~-~v~~-~~l~~~~~~~~~~-~~~G~nVT~P~K~~~-~~~~d~~~-----------~~A~--- 84 (278)
T PRK00258 23 IHNAAFKQLGLDGVYLAI-LVPP-EDLEDAVKGFFAL-GGRGANVTVPFKEAA-FALADELS-----------ERAR--- 84 (278)
T ss_pred HHHHHHHHcCCCcEEEEE-ecCH-HHHHHHHHHHHhC-CCCEEEECcCCHHHH-HHHhhcCC-----------HHHH---
Confidence 334578889999998876 3332 1222222233233 689999999987775 34443321 1111
Q ss_pred HHhhcccCCC-cee------ecCCCCcHHHHHHHhccC---CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeee
Q 022176 144 EVIQSSKCSL-DVA------FSPSKATGKILASELPKN---GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 144 ~~~~~~~~G~-~~~------~~p~~~~~e~L~~~l~~~---~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. |- +.. +....-+..+++..+.+. ...+++++++.+.+....+...|.+.|+ ..+.++.+.
T Consensus 85 ~i------gavNtv~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~--~~V~v~~R~ 156 (278)
T PRK00258 85 LI------GAVNTLVLEDGRLIGDNTDGIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLDLGV--AEITIVNRT 156 (278)
T ss_pred Hh------CCceEEEeeCCEEEEEcccHHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCC--CEEEEEeCC
Confidence 11 11 111 112234577777777641 2356789999887778889999998883 234444443
Q ss_pred eCCC--CcHHH------------HHHcCCCCEEEEEChHHHH
Q 022176 214 PVHH--VDQTV------------LKQALSIPVVAVASPSAVR 241 (301)
Q Consensus 214 ~~~~--~~~~~------------~~~~~~~d~I~ftS~sav~ 241 (301)
.... ..+.. .+.+..+|+|+-+.|....
T Consensus 157 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~ 198 (278)
T PRK00258 157 VERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMS 198 (278)
T ss_pred HHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCC
Confidence 2110 00000 0112567888888887763
No 346
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=43.57 E-value=76 Score=29.30 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=41.9
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
.|.+|+++.+......+...++..|+++..+|+-. ....|.+.+.+.+..-.+.+.|.+++++
T Consensus 79 ~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 141 (368)
T PRK13479 79 RDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGE-DEPPDAAEVEAALAADPRITHVALVHCE 141 (368)
T ss_pred CCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCC-CCCCCHHHHHHHHHhCCCCcEEEEEccc
Confidence 56678888766555555677788999999988642 1123556677666433456677777763
No 347
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=43.56 E-value=1.1e+02 Score=24.14 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCc-hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEchh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~-~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG~~ 137 (301)
..+...++++|.++............+. ......+++. ..|.|+..+-..+..++..+.+.+. +++.+++.|..
T Consensus 29 ~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~pdaii~~~~~~a~~~~~~l~~~g~~vP~di~vv~~~~~ 106 (160)
T PF13377_consen 29 EGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRL-RPDAIICSNDRLALGVLRALRELGIRVPQDISVVSFDDS 106 (160)
T ss_dssp HHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTC-SSSEEEESSHHHHHHHHHHHHHTTSCTTTTSEEEEESSS
T ss_pred HHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcC-CCcEEEEcCHHHHHHHHHHHHHcCCcccccccEEEecCc
Confidence 4466788889988554333322211111 1111223334 6799999999999999999999875 58999999864
No 348
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=43.53 E-value=2.7e+02 Score=25.66 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=38.0
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHHHH---HHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKIL---ASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L---~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
+-.+.+++. |+.+.+.....+.+.. .+.+..... .-+++.. ....+.+.+.|.+.|..+..+.
T Consensus 79 gi~~~~~~~------gy~~~l~~~~~~~~~e~~~~~~l~~~~v--dGiIi~~-~~~~~~~~~~l~~~~~P~V~i~ 144 (333)
T COG1609 79 GIEEAAREA------GYSLLLANTDDDPEKEREYLETLLQKRV--DGLILLG-ERPNDSLLELLAAAGIPVVVID 144 (333)
T ss_pred HHHHHHHHc------CCEEEEECCCCCHHHHHHHHHHHHHcCC--CEEEEec-CCCCHHHHHHHHhcCCCEEEEe
Confidence 346777888 9988777665544443 333443321 2344443 5666778888998888764444
No 349
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=43.50 E-value=43 Score=31.89 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=42.5
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEe--eeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQH--AQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~--~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
.|..|+++.|.= ..+...++-.|++++.+|+..- ...+|.+.+++.+.. +-.+|++.|||
T Consensus 112 pGDeVlip~P~Y--~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~--ktk~i~ln~P~ 173 (393)
T COG0436 112 PGDEVLIPDPGY--PSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP--KTKAIILNSPN 173 (393)
T ss_pred CCCEEEEeCCCC--cCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc--cceEEEEeCCC
Confidence 466788888763 4556677778999999998542 334566677776633 67799998876
No 350
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=43.39 E-value=2.8e+02 Score=25.82 Aligned_cols=215 Identities=19% Similarity=0.254 Sum_probs=92.8
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeC----C----Cc-hHHHHHHhcCCCccEEEEeChHHHHHHHHHH
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG----P----DT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAW 121 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~----~----d~-~~l~~~l~~l~~~d~IiftS~~av~~f~~~l 121 (301)
+.+++.-. +..+.++.++... ...+|+..++.. + .. +.....+. ....+-|++....+ +.+
T Consensus 68 Pd~Vlv~G-D~~~~la~alaA~---~~~ipv~HieaGlRs~d~~~g~~de~~R~~i~---~la~lhf~~t~~~~---~~L 137 (346)
T PF02350_consen 68 PDAVLVLG-DRNEALAAALAAF---YLNIPVAHIEAGLRSGDRTEGMPDEINRHAID---KLAHLHFAPTEEAR---ERL 137 (346)
T ss_dssp -SEEEEET-TSHHHHHHHHHHH---HTT-EEEEES-----S-TTSSTTHHHHHHHHH---HH-SEEEESSHHHH---HHH
T ss_pred CCEEEEEc-CCchHHHHHHHHH---HhCCCEEEecCCCCccccCCCCchhhhhhhhh---hhhhhhccCCHHHH---HHH
Confidence 34455443 3566777666543 222345555444 1 11 23333333 33344455544433 334
Q ss_pred HHcCCCCceEEEEchhhHHHHHHHhhcccC-----CC------c---eeecCCCCcH-----HHHH---HHhccCCCCCC
Q 022176 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKC-----SL------D---VAFSPSKATG-----KILA---SELPKNGKKKC 179 (301)
Q Consensus 122 ~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~-----G~------~---~~~~p~~~~~-----e~L~---~~l~~~~~~~~ 179 (301)
.+.|.+..+|+++|.-....+......... ++ + +.+.|..... +.+. +.|.+. .+.
T Consensus 138 ~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~--~~~ 215 (346)
T PF02350_consen 138 LQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEALKALAER--QNV 215 (346)
T ss_dssp HHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH--TTE
T ss_pred HhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc--CCC
Confidence 456777889999999988888654211000 11 0 1111211111 1222 222222 245
Q ss_pred EEEEEcC--CcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceE
Q 022176 180 TVLYPAS--AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSV 257 (301)
Q Consensus 180 ~vLi~rg--~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i 257 (301)
+++++.. +.++..+.+.|.+.. .+.+++... ..+.+..+...++|+==|+ ++. +... ..++++
T Consensus 216 ~vi~~~hn~p~~~~~i~~~l~~~~----~v~~~~~l~----~~~~l~ll~~a~~vvgdSs-GI~---eEa~---~lg~P~ 280 (346)
T PF02350_consen 216 PVIFPLHNNPRGSDIIIEKLKKYD----NVRLIEPLG----YEEYLSLLKNADLVVGDSS-GIQ---EEAP---SLGKPV 280 (346)
T ss_dssp EEEEE--S-HHHHHHHHHHHTT-T----TEEEE--------HHHHHHHHHHESEEEESSH-HHH---HHGG---GGT--E
T ss_pred cEEEEecCCchHHHHHHHHhcccC----CEEEECCCC----HHHHHHHHhcceEEEEcCc-cHH---HHHH---HhCCeE
Confidence 6777777 555666666665541 233333221 1122322334444444444 433 1111 237889
Q ss_pred EEE---CHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 258 ACI---GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 258 ~aI---G~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
+.| |++-. .+..|..+. +. .+.+.+.++|.+.+..
T Consensus 281 v~iR~~geRqe--~r~~~~nvl-v~--~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 281 VNIRDSGERQE--GRERGSNVL-VG--TDPEAIIQAIEKALSD 318 (346)
T ss_dssp EECSSS-S-HH--HHHTTSEEE-ET--SSHHHHHHHHHHHHH-
T ss_pred EEecCCCCCHH--HHhhcceEE-eC--CCHHHHHHHHHHHHhC
Confidence 999 77643 445566554 43 7899999999988854
No 351
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.27 E-value=2.2e+02 Score=24.74 Aligned_cols=73 Identities=15% Similarity=0.060 Sum_probs=46.4
Q ss_pred CCCCCeEEEeCC---CCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE----EeChHHHHHHHH
Q 022176 47 SNSNPKVVVTRE---RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (301)
Q Consensus 47 ~l~g~~IlitR~---~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii----ftS~~av~~f~~ 119 (301)
++.|++++||-. .+=...+++.|.+.|++++..- +... +.+.+++....+....... +++..+++.+++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~--r~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 79 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTY--AGER--LEKEVRELADTLEGQESLLLPCDVTSDEEITACFE 79 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEec--Cccc--chHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH
Confidence 467899999986 4677899999999999987542 1111 1123333332232211111 588999999888
Q ss_pred HHHH
Q 022176 120 AWKE 123 (301)
Q Consensus 120 ~l~~ 123 (301)
.+.+
T Consensus 80 ~~~~ 83 (257)
T PRK08594 80 TIKE 83 (257)
T ss_pred HHHH
Confidence 7754
No 352
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=43.16 E-value=2.3e+02 Score=28.88 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=55.2
Q ss_pred ccEEEEeCh------HHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCc---------------eeec---
Q 022176 103 FDWIIITSP------EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLD---------------VAFS--- 158 (301)
Q Consensus 103 ~d~IiftS~------~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~---------------~~~~--- 158 (301)
-.+||++|+ .+..+|-+ +. .-++..++.+|-.....+-..++.|..-++ +..+
T Consensus 494 ~p~VIiatsGMl~gG~~~~~l~~-l~--~d~kn~IifvGyqa~gTlGr~l~~g~~~i~i~g~~~~~~i~v~~~V~~~~gf 570 (630)
T TIGR03675 494 EPAIILATSGMLNGGPVVEYLKL-LA--PDPRNSLVFVGYQAEGTLGRRIQSGWREIPLTDEGKTETIKINMEVETVEGF 570 (630)
T ss_pred CCEEEEECCCCCCcchHHHHHHH-Hc--CCCCCeEEEeCCCCCCchHHHHhcCCcEEEecCCCCceEEEEEEEEEEeCCc
Confidence 456777653 33444332 21 123566777887665555554443211110 1101
Q ss_pred CCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-hhHHHHHHHhC-CCe
Q 022176 159 PSKATGKILASELPKNGKKKCTVLYPASAKA-SNEIEEGLSNR-GFE 203 (301)
Q Consensus 159 p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-~~~L~~~L~~~-G~~ 203 (301)
....+..+|.+.+.....+.++|+++.|+.. ...|.+.|.+. |++
T Consensus 571 SaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~~~~~~~ 617 (630)
T TIGR03675 571 SGHSDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKKFNIE 617 (630)
T ss_pred cccCCHHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHHHHhCCc
Confidence 2235667788877765444579999999865 57799998754 543
No 353
>PRK08105 flavodoxin; Provisional
Probab=43.16 E-value=81 Score=25.48 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCc-cEEEEeChH-------HHHHHHHHHHHc--CCCCceEE
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIF-DWIIITSPE-------AGSVFLEAWKEA--GTPNVRIG 132 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~-d~IiftS~~-------av~~f~~~l~~~--~~~~~~i~ 132 (301)
..+++.|++.|+++...++..... + ....+ -+|++||.. ....|+..+.+. .+.+++++
T Consensus 20 ~~l~~~l~~~g~~~~~~~~~~~~~----------~-~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~l~~~~~a 88 (149)
T PRK08105 20 EEAEAILTAQGHEVTLFEDPELSD----------W-QPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTAGYQPNLRYG 88 (149)
T ss_pred HHHHHHHHhCCCceEEechhhCCc----------h-hcccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCcccCCCEEE
Confidence 455667778899887766533211 1 11222 355566653 245566666654 34566665
Q ss_pred EEchh
Q 022176 133 VVGAG 137 (301)
Q Consensus 133 avG~~ 137 (301)
+.|-+
T Consensus 89 vfGlG 93 (149)
T PRK08105 89 VIALG 93 (149)
T ss_pred EEeee
Confidence 55543
No 354
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=42.85 E-value=2.7e+02 Score=25.58 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=53.2
Q ss_pred CEEEEEcC-CcChhHHHHHHHhC-CCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCce
Q 022176 179 CTVLYPAS-AKASNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNS 256 (301)
Q Consensus 179 ~~vLi~rg-~~~~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~ 256 (301)
-+++++.+ ...++.+.+.+.+. |..+ .++. .+ +...+...|+++..|+.+. ++.+. .+++
T Consensus 221 ~~~ii~~~~~~~~~~~~~~~~~~~~~~v---~~~~----~~----~~~~~~~aDl~v~~sG~~~---lEa~a----~G~P 282 (380)
T PRK00025 221 LRFVLPLVNPKRREQIEEALAEYAGLEV---TLLD----GQ----KREAMAAADAALAASGTVT---LELAL----LKVP 282 (380)
T ss_pred eEEEEecCChhhHHHHHHHHhhcCCCCe---EEEc----cc----HHHHHHhCCEEEECccHHH---HHHHH----hCCC
Confidence 46777765 33456677777666 6543 2221 11 2222356898988886543 23322 2455
Q ss_pred EEEE---CHHHHHHHHH---------------cCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 257 VACI---GETTASAAKR---------------LGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 257 i~aI---G~~Ta~al~~---------------~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
++++ |+-+....+. .|....+.-+..+.+.|.+.+.+.++++
T Consensus 283 vI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~ 342 (380)
T PRK00025 283 MVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADG 342 (380)
T ss_pred EEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCH
Confidence 5543 4444222221 1111223335567889999988877643
No 355
>PRK07060 short chain dehydrogenase; Provisional
Probab=42.80 E-value=1.4e+02 Score=25.31 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=25.7
Q ss_pred CCCCCCeEEEeCCC-CchHHHHHHHHhCCCcEEE
Q 022176 46 ASNSNPKVVVTRER-GKNGKLIKALAKHRIDCLE 78 (301)
Q Consensus 46 ~~l~g~~IlitR~~-~~~~~l~~~L~~~G~~v~~ 78 (301)
.++.+++++||-.. .-+..+++.|.++|+++..
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~ 38 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVA 38 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEE
Confidence 46778999999764 4567888999999987653
No 356
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=42.74 E-value=2.4e+02 Score=24.87 Aligned_cols=134 Identities=15% Similarity=0.073 Sum_probs=65.6
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCE
Q 022176 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT 180 (301)
Q Consensus 101 ~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~ 180 (301)
.++|.||.++..-...+.+...+. ++++++.++..... - .+.. +......+.=|+-.+.....+.++
T Consensus 56 ~g~dlIi~~g~~~~~~~~~vA~~~--p~~~F~~~d~~~~~----~------Nv~~-~~~~~~e~~ylaG~~Aa~~t~t~k 122 (258)
T cd06353 56 QGYDLIFGTSFGFMDAALKVAKEY--PDVKFEHCSGYKTA----P------NVGS-YFARIYEGRYLAGVVAGKMTKTNK 122 (258)
T ss_pred cCCCEEEECchhhhHHHHHHHHHC--CCCEEEECCCCCCC----C------Ceee-EechhhHHHHHHHHHHHHhhcCCc
Confidence 579999988877777777766554 57888887543211 1 2211 111111121222222222224578
Q ss_pred EEEEcCCcCh------hHHHHHHHhCCCeeEEEeeeeeeeCCCCc-HHHHHHc--CCCCEEEEEChHHHHHHHHhhhc
Q 022176 181 VLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPVHHVD-QTVLKQA--LSIPVVAVASPSAVRSWVNLISD 249 (301)
Q Consensus 181 vLi~rg~~~~------~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~ 249 (301)
|-++.|.... .-+.+.++..+-++..+..|-....+... .++.+.+ ..+| ++|... .-...++..++
T Consensus 123 VG~I~g~~~~~~~~~~~gF~~G~~~~~p~~~v~~~~~g~~~D~~~a~~~a~~l~~~G~D-vI~~~~-~~~g~~~aa~~ 198 (258)
T cd06353 123 VGYVAAFPIPEVVRGINAFALGARSVNPDATVKVIWTGSWFDPAKEKEAALALIDQGAD-VIYQHT-DSPGVIQAAEE 198 (258)
T ss_pred EEEEcCcccHHHHHHHHHHHHHHHHHCCCcEEEEEEecCCCCcHHHHHHHHHHHHCCCc-EEEecC-CChHHHHHHHH
Confidence 9999988542 23445555444445444444432222211 1122221 4677 555554 23344444443
No 357
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=42.68 E-value=2.2e+02 Score=24.58 Aligned_cols=40 Identities=13% Similarity=-0.002 Sum_probs=19.9
Q ss_pred HHHHcC--CCCEEEEEChHHH--HHHHHhhhcccCCCceEEEECH
Q 022176 222 VLKQAL--SIPVVAVASPSAV--RSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 222 ~~~~~~--~~d~I~ftS~sav--~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
+.+++. .+|+|++.+...- -.+...++... ...+++++-+
T Consensus 145 i~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~-~~~~ii~v~~ 188 (244)
T cd00640 145 ILEQLGGQKPDAVVVPVGGGGNIAGIARALKELL-PNVKVIGVEP 188 (244)
T ss_pred HHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhC-CCCEEEEEee
Confidence 344444 3898888776542 22333333221 2455665544
No 358
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=42.67 E-value=67 Score=29.19 Aligned_cols=63 Identities=24% Similarity=0.147 Sum_probs=44.3
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a 113 (301)
.+++|++|.++++.. ..--+...|++.|++...+.++.+-+ + .....+ .-+..|..+..=|..
T Consensus 132 adlkGk~vg~~~~~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~-~---~~~~al-~~g~vda~~~~ep~~ 195 (335)
T COG0715 132 ADLKGKKVGVPFGGSTSDFLLRYALAKAGLDPDDVELVNLPP-A---DAVAAL-AAGQVDAFVVWEPWN 195 (335)
T ss_pred cCCCCceEEEeCCCchHHHHHHHHHHHcCCCcccceEEeeCc-H---HHHHHH-hcCCcceEEecCCch
Confidence 678999999999986 88899999999999998887333332 1 233444 346677644444433
No 359
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.62 E-value=1.9e+02 Score=25.16 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 92 ~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.+.+.+..-...|.|+.++-..+...++.+.+.++.++.++..+...
T Consensus 173 ~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~~di~vvgfd~~~ 219 (272)
T cd06313 173 IWETWLTKYPQLDGAFCHNDSMALAAYQIMKAAGRTKIVIGGVDGDP 219 (272)
T ss_pred HHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHcCCCceEEEeecCCH
Confidence 34444433345788888877776667777777766556666666543
No 360
>PLN02409 serine--glyoxylate aminotransaminase
Probab=42.54 E-value=1.7e+02 Score=27.65 Aligned_cols=32 Identities=13% Similarity=-0.018 Sum_probs=15.4
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
+|.+||+.....-...+.+.++..|+++..++
T Consensus 83 ~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~ 114 (401)
T PLN02409 83 PGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVE 114 (401)
T ss_pred CCCEEEEeCCCchhHHHHHHHHHcCCceEEEE
Confidence 34556655533333333444555565555444
No 361
>PRK07206 hypothetical protein; Provisional
Probab=42.30 E-value=2.7e+02 Score=26.21 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=22.1
Q ss_pred CEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 179 ~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
+++|++.+......+.+.+++.|+.+..+.
T Consensus 3 k~~liv~~~~~~~~~~~a~~~~G~~~v~v~ 32 (416)
T PRK07206 3 KKVVIVDPFSSGKFLAPAFKKRGIEPIAVT 32 (416)
T ss_pred CeEEEEcCCchHHHHHHHHHHcCCeEEEEE
Confidence 477888887767778888888888765443
No 362
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=42.27 E-value=2.5e+02 Score=27.81 Aligned_cols=165 Identities=13% Similarity=0.116 Sum_probs=87.3
Q ss_pred eEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCCCCce
Q 022176 52 KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPNVR 130 (301)
Q Consensus 52 ~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~-~f~~~l~~~~~~~~~ 130 (301)
+|+++.+-. +...+.|++.++++...+ ..+.+++ .+.+.++|.++..+...+. .+++ . .+++|
T Consensus 1 ~vli~~~~~--~~~~~~l~~~~~~~~~~~------~~~~~~~---~~~~~~~d~li~~~~~~~~~~~l~---~--~~~Lk 64 (525)
T TIGR01327 1 KVLIADPIS--PDGIDILEDVGVEVDVQT------GLSREEL---LEIIPDYDALIVRSATKVTEEVIA---A--APKLK 64 (525)
T ss_pred CEEEeCCCC--HHHHHHHHhcCcEEEeCC------CCCHHHH---HHHhcCCCEEEEcCCCCcCHHHHh---h--CCCce
Confidence 377877543 455567777776665322 1122333 3356789988775543222 2222 2 24566
Q ss_pred EEE---Echh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------h-c------------cC--------CCC
Q 022176 131 IGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------L-P------------KN--------GKK 177 (301)
Q Consensus 131 i~a---vG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l-~------------~~--------~~~ 177 (301)
+++ +|-. -.+++.+. |+.+.-.|. .++...++. + . .| ...
T Consensus 65 ~I~~~~~G~d~id~~~~~~~------gI~V~n~pg-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~ 137 (525)
T TIGR01327 65 VIGRAGVGVDNIDIEAATAR------GILVVNAPT-GNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELY 137 (525)
T ss_pred EEEECCcccchhcHHHHHHC------CCEEEeCCC-cChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccC
Confidence 544 3332 13456666 988766654 233222221 0 0 01 125
Q ss_pred CCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeC----CCC-cHHHHHHcCCCCEEEEEChHH
Q 022176 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV----HHV-DQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 178 ~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~----~~~-~~~~~~~~~~~d~I~ftS~sa 239 (301)
++++.++.-......+++.|+..|.+|..+.-|..... ... ...+.+.+.+.|+|++.-|.+
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt 204 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLT 204 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCC
Confidence 67898888877788899999999987654443311100 000 001122245778888877744
No 363
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=42.24 E-value=1.7e+02 Score=23.07 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=27.9
Q ss_pred eEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHH
Q 022176 52 KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV 96 (301)
Q Consensus 52 ~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~ 96 (301)
|.++.|| ++-...|++.|+.|-.-.++.++.......|...
T Consensus 46 RmvV~~~----d~A~~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~I 86 (142)
T COG4747 46 RMVVDRP----DEAHSVLEEAGFTVRETDVLAVEMEDVPGGLSRI 86 (142)
T ss_pred EEEcCCh----HHHHHHHHHCCcEEEeeeEEEEEecCCCCcHHHH
Confidence 5556565 4556789999999999999888765433333333
No 364
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=42.16 E-value=4.7e+02 Score=28.16 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeee
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.+++|+++.|....-+.+..+...|++|+ .+|++.
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vt--lv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVT--IVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEE--EEEecC
Confidence 57899999999988999999999999764 667663
No 365
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=42.07 E-value=40 Score=28.47 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 100 l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
..+++|++||....++..+..+ ++....+|++....|
T Consensus 114 ~~g~~w~vfTaT~~lr~~~~rl------gl~~~~La~Ad~~rl 150 (179)
T PF12261_consen 114 QQGFEWVVFTATRQLRNLFRRL------GLPPTVLADADPSRL 150 (179)
T ss_pred HCCCCEEEEeCCHHHHHHHHHc------CCCceeccccCHhHc
Confidence 4789999999999999888754 455666777766666
No 366
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=42.00 E-value=83 Score=28.20 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=41.1
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a 113 (301)
..|+|++|.+++.......+...|++.|.+...+.+.. .+. ......+ .-+..|.++...+..
T Consensus 96 ~DLkGK~Igv~~~s~~~~~l~~~L~~~Gl~~~dv~~v~---~~~-~~~~~al-~~G~vDa~~~~~p~~ 158 (300)
T TIGR01729 96 EDLKGKNVAVPFVSTTHYSLLAALKHWKTDPREVNILN---LKP-PQIVAAW-QRGDIDAAYVWPPAL 158 (300)
T ss_pred hHcCCCEEEeCCCCcHHHHHHHHHHHcCCChhheEEEe---cCc-HHHHHHH-HcCCcCEEEEecHHH
Confidence 47899999998766655667778988998755433222 221 2233444 347888888777654
No 367
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=41.75 E-value=1.1e+02 Score=25.18 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=32.6
Q ss_pred hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC---CCccEEEEeChHHH
Q 022176 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD---TIFDWIIITSPEAG 114 (301)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l---~~~d~IiftS~~av 114 (301)
...++..|++.|+++... .+.+ +|.+.+.+.+.+. .++|.||.|-..++
T Consensus 24 ~~~l~~~L~~~G~~v~~~---~iv~-Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 24 GQYLVERLTEAGHRLADR---AIVK-DDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred HHHHHHHHHHCCCeEEEE---EEcC-CCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 457788899999886643 3333 3445666666552 57999988866654
No 368
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=41.72 E-value=96 Score=27.87 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=53.4
Q ss_pred CEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHH----HHhhhcccCCC
Q 022176 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSW----VNLISDTEQWS 254 (301)
Q Consensus 179 ~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~----~~~l~~~~~~~ 254 (301)
-+++++++....+.+.+..++.|..- .+...-. .+ ++.+.+...|+++++|.. +.| ++.+. .+
T Consensus 224 ~~l~ivG~g~~~~~~~~~~~~~~~~~-~v~~~g~--~~----~~~~~~~~adi~v~ps~~--E~~~~~~lEAma----~G 290 (358)
T cd03812 224 AKLLLVGDGELEEEIKKKVKELGLED-KVIFLGV--RN----DVPELLQAMDVFLFPSLY--EGLPLVLIEAQA----SG 290 (358)
T ss_pred eEEEEEeCCchHHHHHHHHHhcCCCC-cEEEecc--cC----CHHHHHHhcCEEEecccc--cCCCHHHHHHHH----hC
Confidence 45555554444455555555554321 1111111 11 122234568888888753 222 22221 25
Q ss_pred ceEEEEC-HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHccC
Q 022176 255 NSVACIG-ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 299 (301)
Q Consensus 255 ~~i~aIG-~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~ 299 (301)
+++++.. ....+.+.. +. .++....+.+++.++|.+.+++++
T Consensus 291 ~PvI~s~~~~~~~~i~~-~~--~~~~~~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 291 LPCILSDTITKEVDLTD-LV--KFLSLDESPEIWAEEILKLKSEDR 333 (358)
T ss_pred CCEEEEcCCchhhhhcc-Cc--cEEeCCCCHHHHHHHHHHHHhCcc
Confidence 6666542 233444444 32 344555668999999999887765
No 369
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.58 E-value=1.3e+02 Score=25.95 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=27.0
Q ss_pred CCCCCeEEEeCCC---CchHHHHHHHHhCCCcEEEe
Q 022176 47 SNSNPKVVVTRER---GKNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 47 ~l~g~~IlitR~~---~~~~~l~~~L~~~G~~v~~~ 79 (301)
++.|++||||-.. .-+..+++.|.++|++++.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~ 37 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFT 37 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 5678999999875 46788999999999987755
No 370
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=41.47 E-value=57 Score=30.96 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=27.1
Q ss_pred cCCCccEEEEeChHH-------HHHHHHHHHHcCCCCceEEEEch
Q 022176 99 ADTIFDWIIITSPEA-------GSVFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 99 ~l~~~d~IiftS~~a-------v~~f~~~l~~~~~~~~~i~avG~ 136 (301)
.+.++|.|+|-||.= +..|++.+....+.+.++++.|.
T Consensus 297 ~~~~~d~ii~GspT~~~~~~~~~~~~l~~l~~~~~~~K~~a~FGs 341 (394)
T PRK11921 297 EVFKSKAILVGSSTINRGILSSTAAILEEIKGLGFKNKKAAAFGS 341 (394)
T ss_pred HHHhCCEEEEECCCcCccccHHHHHHHHHhhccCcCCCEEEEEec
Confidence 345799999999882 45566666555566778888885
No 371
>PLN02253 xanthoxin dehydrogenase
Probab=41.41 E-value=1.5e+02 Score=25.97 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=42.4
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWK 122 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii--ftS~~av~~f~~~l~ 122 (301)
..+.|+++|||-... =+..+++.|.++|+++..+-. .. ...+.+...+..-.+..++. +++...++.+++.+.
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDL---QD-DLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTV 89 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeC---CH-HHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHH
Confidence 356689999998764 456789999999998765421 10 01112222221101122221 577888888777654
Q ss_pred H
Q 022176 123 E 123 (301)
Q Consensus 123 ~ 123 (301)
+
T Consensus 90 ~ 90 (280)
T PLN02253 90 D 90 (280)
T ss_pred H
Confidence 4
No 372
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=41.28 E-value=99 Score=25.55 Aligned_cols=69 Identities=17% Similarity=0.067 Sum_probs=44.7
Q ss_pred CcHHHHHHHhccCC--CCCCEEEEE-cCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChH
Q 022176 162 ATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 162 ~~~e~L~~~l~~~~--~~~~~vLi~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
-|+.+.++.|.... ..|++++++ |+..-...|...|.++|+.|+.+..|.. . +.+...+.|+|+-..+.
T Consensus 18 cTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~-----~---l~~~~~~ADIVVsa~G~ 89 (160)
T PF02882_consen 18 CTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK-----N---LQEITRRADIVVSAVGK 89 (160)
T ss_dssp HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS-----S---HHHHHTTSSEEEE-SSS
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC-----c---ccceeeeccEEeeeecc
Confidence 36788877776543 367887665 5555678899999999999987766641 1 22234678888877765
No 373
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.20 E-value=2e+02 Score=24.61 Aligned_cols=44 Identities=16% Similarity=0.079 Sum_probs=26.9
Q ss_pred HHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEch
Q 022176 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (301)
Q Consensus 93 l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG~ 136 (301)
+.+.+..-...|+|+.+|-..+..+++.+.+.+. .++.+++.+.
T Consensus 168 ~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~v~g~d~ 214 (269)
T cd06288 168 AAALLDLDDRPTAIFCGNDRMAMGAYQALLERGLRIPQDVSVVGFDN 214 (269)
T ss_pred HHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHcCCCCcccceEEeeCC
Confidence 3444433345788888877766667777777664 2555555554
No 374
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=41.05 E-value=98 Score=28.26 Aligned_cols=178 Identities=14% Similarity=0.065 Sum_probs=89.5
Q ss_pred ccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhc---c----cCCCce---ee-cCCCC-------cH
Q 022176 103 FDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQS---S----KCSLDV---AF-SPSKA-------TG 164 (301)
Q Consensus 103 ~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~---~----~~G~~~---~~-~p~~~-------~~ 164 (301)
.|+++..|....+.+ .+.+.+.-+++++|............. . ..|+.. .+ ..... ..
T Consensus 142 ad~~~~~s~~~~~~l----~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~ 217 (363)
T cd03786 142 SDLHFAPTEEARRNL----LQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQL 217 (363)
T ss_pred hhhccCCCHHHHHHH----HHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHH
Confidence 466666666654443 345667778999996643333211000 0 002211 11 11111 13
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHH
Q 022176 165 KILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWV 244 (301)
Q Consensus 165 e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~ 244 (301)
+.|++.+......+-.++++.....++.+.+.+.+.+..-..+.. ..... ..++...+...|+++.-|+ .+ ..
T Consensus 218 ~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~---~~~~~-~~~~~~l~~~ad~~v~~Sg-gi--~~ 290 (363)
T cd03786 218 EEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLL---ISPLG-YLYFLLLLKNADLVLTDSG-GI--QE 290 (363)
T ss_pred HHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEE---ECCcC-HHHHHHHHHcCcEEEEcCc-cH--Hh
Confidence 356666654321124566666666677788777665530001111 10011 1222222456888887776 32 12
Q ss_pred HhhhcccCCCceEEEECHHH-HHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 245 NLISDTEQWSNSVACIGETT-ASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 245 ~~l~~~~~~~~~i~aIG~~T-a~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
+.+ ..++++++++..+ ...+.+.|+.. . .. .+.+++.++|.+.++.+
T Consensus 291 Ea~----~~g~PvI~~~~~~~~~~~~~~g~~~-~-~~-~~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 291 EAS----FLGVPVLNLRDRTERPETVESGTNV-L-VG-TDPEAILAAIEKLLSDE 338 (363)
T ss_pred hhh----hcCCCEEeeCCCCccchhhheeeEE-e-cC-CCHHHHHHHHHHHhcCc
Confidence 221 1258888888654 33455566533 2 22 36899999999887654
No 375
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.01 E-value=1.6e+02 Score=24.91 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=25.4
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.+.|++++||-... -+..+++.|.+.|++++.+
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~ 35 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGV 35 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEE
Confidence 36789999997543 4578889999999987654
No 376
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=41.00 E-value=73 Score=25.72 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhC-CCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC
Q 022176 48 NSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (301)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~-G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS 110 (301)
|.|-+|.-|.... +.|+++ |+.+..+ ...+......+.+.+ .-+.+|.||+|.
T Consensus 30 l~Gf~l~AT~gTa------~~L~~~~Gi~v~~v---i~~~~gg~~~i~~~I-~~g~i~lVInt~ 83 (142)
T PRK05234 30 LEQHELYATGTTG------GLIQEATGLDVTRL---LSGPLGGDQQIGALI-AEGKIDMLIFFR 83 (142)
T ss_pred hcCCEEEEeChHH------HHHHhccCCeeEEE---EcCCCCCchhHHHHH-HcCceeEEEEec
No 377
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=40.97 E-value=3.3e+02 Score=26.76 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=39.2
Q ss_pred CeEEEeCCCCchHHHHHHHHhC--CCcEEEece-----e-E----------eeeCCCchHHHHHHhcCCCccEEEEeCh
Q 022176 51 PKVVVTRERGKNGKLIKALAKH--RIDCLELPL-----I-Q----------HAQGPDTDRLSSVLNADTIFDWIIITSP 111 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~--G~~v~~~P~-----~-~----------~~~~~d~~~l~~~l~~l~~~d~IiftS~ 111 (301)
|+||++-...+...++..|++. |.+++.+|- + . .....|.+.+.+.+ +-...|+||...-
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a-~~~~id~Vi~g~E 78 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIGNINSPEEVKKVA-KEVNPDLVVIGPE 78 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCChhheeecccccCceEecCCCCHHHHHHHH-HHhCCCEEEECCc
Confidence 6899998888888999999887 888887764 1 1 11112344555554 2356788876443
No 378
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=40.93 E-value=1.3e+02 Score=25.92 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=42.8
Q ss_pred CCCEEEEEcCCc-----ChhHHHHHHHhCCCe-eEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHH
Q 022176 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFE-VVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWV 244 (301)
Q Consensus 177 ~~~~vLi~rg~~-----~~~~L~~~L~~~G~~-v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~ 244 (301)
.+.+|+++.... ..+.+.+.+++.|++ +..+.+.++.. .....+.+.+...|+|+|+-..+.+..-
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~--a~~~~~~~~l~~ad~I~~~GG~~~~~~~ 99 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREA--ANDPEVVARLRDADGIFFTGGDQLRITS 99 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHH--cCCHHHHHHHHhCCEEEEeCCcHHHHHH
Confidence 456888776653 345677888899985 55555544331 1223344456789999999999876554
No 379
>PRK12831 putative oxidoreductase; Provisional
Probab=40.88 E-value=1.5e+02 Score=28.79 Aligned_cols=34 Identities=15% Similarity=0.050 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeee
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.+++|+++.|....-+++..|...|++|+ .+|+.
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vt--lv~r~ 313 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVH--IVYRR 313 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEE--EEeec
Confidence 57899999999999999999999999864 34554
No 380
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=40.72 E-value=2.3e+02 Score=24.24 Aligned_cols=147 Identities=10% Similarity=0.053 Sum_probs=77.9
Q ss_pred CccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCC
Q 022176 102 IFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKC 179 (301)
Q Consensus 102 ~~d~IiftS~~-av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~ 179 (301)
+.+.||-.... ........+.. .+++++..+.......... .. .....+.|.. ..++.+++.+.... .+
T Consensus 67 ~v~~iig~~~~~~~~~~~~~~~~---~~iP~i~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~~ 137 (299)
T cd04509 67 GVDALVGPVSSGVALAVAPVAEA---LKIPLISPGATAPGLTDKK---GY-PYLFRTGPSDEQQAEALADYIKEYN--WK 137 (299)
T ss_pred CceEEEcCCCcHHHHHHHHHHhh---CCceEEeccCCCccccccc---CC-CCEEEecCCcHHHHHHHHHHHHHcC--Cc
Confidence 67777765433 33333343333 3678888776542221100 00 1112223332 34556666676543 35
Q ss_pred EEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-HHHHHHHHhhhccc
Q 022176 180 TVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLISDTE 251 (301)
Q Consensus 180 ~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~-sav~~~~~~l~~~~ 251 (301)
++.++..+.. ...+.+.+++.|.++.....|... .......++.+ ..+|+|++.+. ..+..|++.+...+
T Consensus 138 ~v~iv~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~--~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~g 215 (299)
T cd04509 138 KVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPLG--TTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQAAEAG 215 (299)
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEecCCCC--CccHHHHHHHHHhcCCCEEEEcccchHHHHHHHHHHHcC
Confidence 7777765543 345778888898777544444321 12222233333 35788888776 88888888877654
Q ss_pred C-CCceEEE
Q 022176 252 Q-WSNSVAC 259 (301)
Q Consensus 252 ~-~~~~i~a 259 (301)
. .+..++.
T Consensus 216 ~~~~~~~i~ 224 (299)
T cd04509 216 LTGGYPILG 224 (299)
T ss_pred CCCCCcEEe
Confidence 3 1445544
No 381
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=40.67 E-value=1.6e+02 Score=25.27 Aligned_cols=31 Identities=19% Similarity=0.136 Sum_probs=24.6
Q ss_pred CCCEEEE-EcCCcChhHHHHHHHhCCCeeEEE
Q 022176 177 KKCTVLY-PASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 177 ~~~~vLi-~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
.|+++++ =||..-...|...|.++|+.|+.+
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~ 92 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDGARVYSV 92 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEE
Confidence 5777654 566667888999999999999866
No 382
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=40.61 E-value=1.5e+02 Score=25.32 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=21.5
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchh
Q 022176 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (301)
Q Consensus 101 ~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~ 137 (301)
..++.|+..+-..+...++.+.+.+.+++.++..+..
T Consensus 180 ~~~~ai~~~~d~~a~~~~~~l~~~g~~di~iig~d~~ 216 (268)
T cd06323 180 PDIKGVFAQNDEMALGAIEALKAAGKDDVKVVGFDGT 216 (268)
T ss_pred CCcCEEEEcCCchHHHHHHHHHHcCCCCcEEEEeCCC
Confidence 3466666666665555566666655545555555544
No 383
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=40.57 E-value=1.1e+02 Score=25.56 Aligned_cols=75 Identities=11% Similarity=0.221 Sum_probs=43.6
Q ss_pred CEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEE-ChH---HHHHHHHhhhcccCC
Q 022176 179 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA-SPS---AVRSWVNLISDTEQW 253 (301)
Q Consensus 179 ~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ft-S~s---av~~~~~~l~~~~~~ 253 (301)
+|||++.-... ...+.+.|++.|.++..+..|+. + .+ .+..+|.|+++ +|. ....+.+.++.. ..
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~---~--~~----~l~~~d~iIi~gGp~~~~~~~~~~~~i~~~-~~ 71 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDL---D--LD----EVENFSHILISPGPDVPRAYPQLFAMLERY-HQ 71 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCcc---C--hh----HhccCCEEEECCCCCChHHhhHHHHHHHHh-cC
Confidence 57887776654 44599999999988766665542 1 11 24568888877 554 333333344321 11
Q ss_pred CceE--EEECHH
Q 022176 254 SNSV--ACIGET 263 (301)
Q Consensus 254 ~~~i--~aIG~~ 263 (301)
+.++ +|.|-.
T Consensus 72 ~~PiLGIClG~Q 83 (190)
T PRK06895 72 HKSILGVCLGHQ 83 (190)
T ss_pred CCCEEEEcHHHH
Confidence 3454 466654
No 384
>PRK06398 aldose dehydrogenase; Validated
Probab=40.52 E-value=1.4e+02 Score=25.95 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=26.9
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
++.|++||||-... =+..+++.|.+.|++++.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~ 36 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINF 36 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 46789999998764 4578999999999988754
No 385
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=40.51 E-value=2e+02 Score=23.46 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=6.9
Q ss_pred CCcHHHHHHHhcc
Q 022176 161 KATGKILASELPK 173 (301)
Q Consensus 161 ~~~~e~L~~~l~~ 173 (301)
..+.+.+++.|.+
T Consensus 10 tGnTe~vA~~Ia~ 22 (167)
T TIGR01752 10 TGNTEGIAEKIQK 22 (167)
T ss_pred CChHHHHHHHHHH
Confidence 3455556555544
No 386
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=40.47 E-value=1e+02 Score=29.73 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=54.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----
Q 022176 165 KILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----- 237 (301)
Q Consensus 165 e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~----- 237 (301)
.-|++...+.-.. +++||+.|++.-..+.-.-...|.....+.+|.-. ..+.++..+ .+++.+++=|-
T Consensus 108 TLLLQva~~lA~~-~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt----~~e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 108 TLLLQVAARLAKR-GKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAET----NLEDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred HHHHHHHHHHHhc-CcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhc----CHHHHHHHHHhcCCCEEEEeccceeec
Confidence 3344444433323 49999999999877776666677555444444322 223344333 57787777543
Q ss_pred ----------HHHHHHHHhhhcc-cCCCceEEEECHHHHHH
Q 022176 238 ----------SAVRSWVNLISDT-EQWSNSVACIGETTASA 267 (301)
Q Consensus 238 ----------sav~~~~~~l~~~-~~~~~~i~aIG~~Ta~a 267 (301)
+.||.....+-+. +..++.++-+|..|.+=
T Consensus 183 ~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG 223 (456)
T COG1066 183 EEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEG 223 (456)
T ss_pred ccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcccc
Confidence 2344443332221 12367777788877654
No 387
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=40.45 E-value=2.7e+02 Score=26.03 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=22.4
Q ss_pred CCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 178 ~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
.++|+++.+......+...+++.|+.|..+.
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~ 42 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVD 42 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3588898876556667778888998775443
No 388
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=40.41 E-value=77 Score=29.64 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHH----HHHHcCCCCEEEEE
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT----VLKQALSIPVVAVA 235 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~----~~~~~~~~d~I~ft 235 (301)
.++++|+++..+-.....+.|.++|+. .+.+..+.......+. .+.-..++|+|+..
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~--~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYS--RITFCSRQQLTLPYRTVVREELSFQDPYDVIFFG 233 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCC--EEEEEcCCccccchhhhhhhhhhcccCCCEEEEc
Confidence 678999999999999999999999963 2333322211111111 11223689999984
No 389
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=40.36 E-value=1.6e+02 Score=26.35 Aligned_cols=124 Identities=11% Similarity=0.067 Sum_probs=62.6
Q ss_pred cHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHH
Q 022176 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRS 242 (301)
Q Consensus 163 ~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~ 242 (301)
+.+.+++.+.... .-++++.......+.+.+..++.+..- .+..+..++ .+++.+-....|+.+++|....+.
T Consensus 205 ~~~~li~a~~~l~--~~~l~i~G~g~~~~~~~~~~~~~~~~~-~V~~~g~v~----~~~~~~~~~~ad~~i~ps~~~~e~ 277 (357)
T cd03795 205 GLDVLLEAAAALP--DAPLVIVGEGPLEAELEALAAALGLLD-RVRFLGRLD----DEEKAALLAACDVFVFPSVERSEA 277 (357)
T ss_pred CHHHHHHHHHhcc--CcEEEEEeCChhHHHHHHHHHhcCCcc-eEEEcCCCC----HHHHHHHHHhCCEEEeCCcccccc
Confidence 3455666665543 345666555444455555554444221 222222221 122333345789999998542222
Q ss_pred ----HHHhhhcccCCCceEEEECH-HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 243 ----WVNLISDTEQWSNSVACIGE-TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 243 ----~~~~l~~~~~~~~~i~aIG~-~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
+++.+. .++++++... ...+.+...|-.- ++.+.-+.++++++|.+.++++
T Consensus 278 ~g~~~~Ea~~----~g~Pvi~~~~~~~~~~i~~~~~~g-~~~~~~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 278 FGIVLLEAMA----FGKPVISTEIGTGGSYVNLHGVTG-LVVPPGDPAALAEAIRRLLEDP 333 (357)
T ss_pred cchHHHHHHH----cCCCEEecCCCCchhHHhhCCCce-EEeCCCCHHHHHHHHHHHHHCH
Confidence 233322 2566665432 2233444323222 2334458999999999887654
No 390
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.34 E-value=1.4e+02 Score=25.32 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=25.1
Q ss_pred CCCCCeEEEeCCC-CchHHHHHHHHhCCCcEEEe
Q 022176 47 SNSNPKVVVTRER-GKNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 47 ~l~g~~IlitR~~-~~~~~l~~~L~~~G~~v~~~ 79 (301)
.+.+++||||-.. .-+..+++.|.++|++++.+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3668899999865 35578888898999887643
No 391
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=40.27 E-value=47 Score=30.78 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=46.0
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~ 115 (301)
..|+||+|.+.+.....--+.+.|++.|.+...+-++.+.+ .....++ .-+..|..+...|....
T Consensus 102 aDLKGKkIav~~gs~~~~ll~~aL~~aGL~~~DV~~v~~~~----~d~~aAl-~~G~VDAa~~~eP~~s~ 166 (328)
T TIGR03427 102 ADLKGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSD----ADIVAAF-ITKDVTAVVTWNPQLSE 166 (328)
T ss_pred HHcCCCEEeccCCChHHHHHHHHHHHcCCCHHHeEEEeCCh----HHHHHHH-hcCCCcEEEEcCchHHH
Confidence 57999999999987777788899999999754433333332 2234555 44789999887777544
No 392
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=40.12 E-value=2e+02 Score=24.61 Aligned_cols=75 Identities=13% Similarity=0.059 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEchh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG~~ 137 (301)
.-+.+.|+++|.++............+ .+.+.+.+..-...+.|+..|-..+..+++.+.+.+. +++.+++.+..
T Consensus 136 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~di~vig~d~~ 215 (268)
T cd01575 136 EGFRAALRAAGLDPPLVVTTPEPSSFALGRELLAELLARWPDLDAVFCSNDDLALGALFECQRRGISVPEDIAIAGFGDL 215 (268)
T ss_pred HHHHHHHHHcCCCCCceeEeccCCCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCcceEEEecCCc
Confidence 345567777776432211111111100 1233444433345788888877776677777777663 35666666654
No 393
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=39.91 E-value=93 Score=28.93 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCce
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNS 256 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~ 256 (301)
...||+++.+.+-..++.-++...|.+|.-+.-|...|..... ..-.+|--+.+.++++..+..+.+.. -..
T Consensus 11 ~a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~APAmqVA-------hrs~Vi~MlD~~al~avv~rekPd~I-VpE 82 (394)
T COG0027 11 QATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVA-------HRSYVIDMLDGDALRAVVEREKPDYI-VPE 82 (394)
T ss_pred CCeEEEEecCCccchHHHHHHHhcCCEEEEecCcCCChhhhhh-------hheeeeeccCHHHHHHHHHhhCCCee-eeh
Confidence 3568999999998999999999999999999999876533221 23345556677777777665543210 011
Q ss_pred EEEECHHHHHHHHHcCCCe
Q 022176 257 VACIGETTASAAKRLGLKN 275 (301)
Q Consensus 257 i~aIG~~Ta~al~~~G~~~ 275 (301)
+-+|-.-+--.+++.|+.+
T Consensus 83 iEAI~td~L~elE~~G~~V 101 (394)
T COG0027 83 IEAIATDALVELEEEGYTV 101 (394)
T ss_pred hhhhhHHHHHHHHhCCceE
Confidence 2345555555666667653
No 394
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.81 E-value=2.6e+02 Score=25.48 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=79.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc---CCCccEEEEeChH--HHH--HHHHHHHHc-CCCCceEEEEc
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPE--AGS--VFLEAWKEA-GTPNVRIGVVG 135 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~---l~~~d~IiftS~~--av~--~f~~~l~~~-~~~~~~i~avG 135 (301)
.-.+..++.|+++..+-+-+.. ..+++.+.+.+ ....|.|++--|- .++ ..++.+... ..|++.-.-.|
T Consensus 50 ~k~k~a~~~Gi~~~~~~l~~~~---t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g 126 (282)
T PRK14166 50 SKAKACEECGIKSLVYHLNENT---TQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVG 126 (282)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhH
Confidence 3445667789887755442221 22345444444 4678899988772 222 122222111 01232222222
Q ss_pred hhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEE-EcCCcChhHHHHHHHhCCCeeEEEeeeee
Q 022176 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLY-PASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi-~rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.|- . |....+.| -|+.+.++.|.... ..|+++++ =|+..-...|...|.++|+.|+.+.-+.
T Consensus 127 -----~l~-~------g~~~~~~P--cTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T- 191 (282)
T PRK14166 127 -----YLN-L------GLESGFLP--CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT- 191 (282)
T ss_pred -----HHh-c------CCCCCCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-
Confidence 111 1 32222444 36888877776543 36788665 5666667889999999999987555432
Q ss_pred eeCCCCcHHHHHHcCCCCEEEEEChH
Q 022176 213 EPVHHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
.. +.+...+.|+|+-.-+.
T Consensus 192 ---~n----l~~~~~~ADIvIsAvGk 210 (282)
T PRK14166 192 ---KD----LSLYTRQADLIIVAAGC 210 (282)
T ss_pred ---CC----HHHHHhhCCEEEEcCCC
Confidence 11 11123467777765543
No 395
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=39.74 E-value=77 Score=29.70 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=40.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a 113 (301)
.|.+|+++.|.- ..+....+..|+++..+|+-. ....|.+.+.+.+ ...+.+.|++++|+-
T Consensus 126 ~gd~Vlv~~P~y--~~y~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~-~~~~~~~v~l~~P~N 186 (380)
T PLN03026 126 PGDKIIDCPPTF--GMYVFDAAVNGAEVIKVPRTP-DFSLDVPRIVEAV-ETHKPKLLFLTSPNN 186 (380)
T ss_pred CCCEEEEcCCCh--HHHHHHHHHcCCEEEEeecCC-CCCcCHHHHHHHH-hccCCcEEEEeCCCC
Confidence 567899988763 455566677899999888721 1122445555554 124678899898873
No 396
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.69 E-value=2.9e+02 Score=25.37 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=79.2
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc---CCCccEEEEeChH--HHH--HHHHHHHHc-CCCCceEEEEc
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPE--AGS--VFLEAWKEA-GTPNVRIGVVG 135 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~---l~~~d~IiftS~~--av~--~f~~~l~~~-~~~~~~i~avG 135 (301)
.-.+.+++.|++....-+-+. ...+++.+.+.+ ....|.|++--|- ..+ ..++.+... ..|++.-.-.|
T Consensus 53 ~k~k~a~~~Gi~~~~~~l~~~---~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g 129 (301)
T PRK14194 53 NKILRAEEAGIRSLEHRLPAD---TSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVG 129 (301)
T ss_pred HHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhh
Confidence 334567778988765444221 122345444433 4678889887772 222 122222111 01233222222
Q ss_pred hhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcCC-cChhHHHHHHHhCCCeeEEEeeeee
Q 022176 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASA-KASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~-~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.|- . |-. .+.| -|+.+.++.|.... ..|++|.++.-. .-...+...|.+.|++|+.+. +
T Consensus 130 -----~l~-~------~~~-~~~P--cTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~---~ 191 (301)
T PRK14194 130 -----GLS-Q------GRD-VLTP--CTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVH---S 191 (301)
T ss_pred -----HHh-c------CCC-CCCC--CcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEC---C
Confidence 111 1 322 2444 36888877776543 378998887764 667789999999999875543 2
Q ss_pred eeCCCCcHHHHHHcCCCCEEEEEChHH
Q 022176 213 EPVHHVDQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~I~ftS~sa 239 (301)
... ...+. ..+.|+|+..-+..
T Consensus 192 ~t~--~l~e~---~~~ADIVIsavg~~ 213 (301)
T PRK14194 192 RST--DAKAL---CRQADIVVAAVGRP 213 (301)
T ss_pred CCC--CHHHH---HhcCCEEEEecCCh
Confidence 211 22222 34567666655544
No 397
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=39.57 E-value=74 Score=26.35 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=34.1
Q ss_pred CCceeecCCCCcHHHHHHHhccCCCC-CCEEEEEcCCcChhHHHHHHHhCCCee
Q 022176 152 SLDVAFSPSKATGKILASELPKNGKK-KCTVLYPASAKASNEIEEGLSNRGFEV 204 (301)
Q Consensus 152 G~~~~~~p~~~~~e~L~~~l~~~~~~-~~~vLi~rg~~~~~~L~~~L~~~G~~v 204 (301)
|+++.|.++..+++.+++.+...... +.+|.++.++.. +.......|+.+
T Consensus 67 gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~---iq~~~~~~GA~~ 117 (166)
T PF05991_consen 67 GIEVVFTKEGETADDYIERLVRELKNRPRQVTVVTSDRE---IQRAARGRGAKR 117 (166)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHH---HHHHHhhCCCEE
Confidence 88888888878888887777554433 567888887664 444455666643
No 398
>PRK15452 putative protease; Provisional
Probab=39.50 E-value=3.7e+02 Score=26.15 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=48.5
Q ss_pred CCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHH
Q 022176 228 SIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 291 (301)
Q Consensus 228 ~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai 291 (301)
.+|.|++.++..+..+.+..+.... .+..+-+.-..+++.+.++|+..++.+.+-+.+.|-+..
T Consensus 89 gvDgvIV~d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~ 153 (443)
T PRK15452 89 KPDALIMSDPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIR 153 (443)
T ss_pred CCCEEEEcCHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHH
Confidence 6899999999999888775432211 133444567889999999999998889999988877543
No 399
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=39.50 E-value=1.2e+02 Score=29.66 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=57.2
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCc-hHHHHHHhc----CCCccEEEEeChHHHHHHHHHH
Q 022176 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNA----DTIFDWIIITSPEAGSVFLEAW 121 (301)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~-~~l~~~l~~----l~~~d~IiftS~~av~~f~~~l 121 (301)
-+.||++.++-.....-.+++.|.+.|.+++.+-.- ....+. +...+.+.. .+..+.++...++-.+ +.+.+
T Consensus 311 ~L~GKrvai~Gdp~~~i~LarfL~elGmevV~vgt~--~~~~~~~~~d~~~l~~~~~~~~~~~~vive~~D~~e-l~~~i 387 (457)
T CHL00073 311 LVRGKSVFFMGDNLLEISLARFLIRCGMIVYEIGIP--YMDKRYQAAELALLEDTCRKMNVPMPRIVEKPDNYN-QIQRI 387 (457)
T ss_pred HHCCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeC--CCChhhhHHHHHHHHHHhhhcCCCCcEEEeCCCHHH-HHHHH
Confidence 478999998887788889999999999999988111 111121 111222322 2223456666665444 55555
Q ss_pred HHcCCCCceEEEEchhhHHHHHHHhhcccCCCce
Q 022176 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (301)
Q Consensus 122 ~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~ 155 (301)
.+. +.-++.-|-..+.-|... |+.+
T Consensus 388 ~~~---~pDLlIgG~~~~~Pl~~~------G~p~ 412 (457)
T CHL00073 388 REL---QPDLAITGMAHANPLEAR------GINT 412 (457)
T ss_pred hhC---CCCEEEccccccCchhhc------CCcc
Confidence 543 333444444556666666 7654
No 400
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=39.44 E-value=2.4e+02 Score=23.92 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=54.6
Q ss_pred CeEEEeCCCCch-----HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh-----HHHHHHHHH
Q 022176 51 PKVVVTRERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLEA 120 (301)
Q Consensus 51 ~~IlitR~~~~~-----~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~-----~av~~f~~~ 120 (301)
.+|++.-+.++. .-....|+.+|++|+++=.- . | .+.+.+.+ .-.+.|.|.+... ..++...+.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~--v--p-~e~~v~~~-~~~~pd~v~lS~~~~~~~~~~~~~i~~ 158 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD--V--P-IDTVVEKV-KKEKPLMLTGSALMTTTMYGQKDINDK 158 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC--C--C-HHHHHHHH-HHcCCCEEEEccccccCHHHHHHHHHH
Confidence 456665554322 34566889999999976421 1 1 24455555 3356777665543 455666677
Q ss_pred HHHcCC-CCceEEEEchhhHHHHHHH
Q 022176 121 WKEAGT-PNVRIGVVGAGTASIFEEV 145 (301)
Q Consensus 121 l~~~~~-~~~~i~avG~~Ta~~L~~~ 145 (301)
+++.+. +++++++=|......+.+.
T Consensus 159 l~~~~~~~~v~i~vGG~~~~~~~~~~ 184 (197)
T TIGR02370 159 LKEEGYRDSVKFMVGGAPVTQDWADK 184 (197)
T ss_pred HHHcCCCCCCEEEEEChhcCHHHHHH
Confidence 777654 4789999997765555444
No 401
>PRK12359 flavodoxin FldB; Provisional
Probab=39.28 E-value=1.4e+02 Score=24.83 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=26.0
Q ss_pred cCCCccEEEEeChH--------HHHHHHHHHHHcCCCCceEEEEc
Q 022176 99 ADTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVVG 135 (301)
Q Consensus 99 ~l~~~d~IiftS~~--------av~~f~~~l~~~~~~~~~i~avG 135 (301)
.+..||.|||-+|. ....|+..+.+..+.+.++++.|
T Consensus 42 ~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~~dl~gK~vAlFG 86 (172)
T PRK12359 42 LMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIVALYG 86 (172)
T ss_pred HHccCCEEEEEecccCCCcCcHHHHHHHHHHhhCCCCCCEEEEEe
Confidence 45789999999887 22445555666556777888777
No 402
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=39.21 E-value=1.1e+02 Score=26.38 Aligned_cols=73 Identities=15% Similarity=0.044 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEc
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG 135 (301)
.-+.+.++++|..+...-.+......+ .+.+.+.+......|.|+.++...+..+++.+.+.++ +++.+++.+
T Consensus 137 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~~~~~~l~~~g~~~p~~i~vig~d 214 (268)
T cd06273 137 AGVRAALAEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVICGNDVLALGALYEARRLGLSVPEDLSIVGFD 214 (268)
T ss_pred HHHHHHHHHcCCCCCHHHeeeCCCcHHHHHHHHHHHHcCCCCCCEEEEcChHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 344567777775543222221111111 1233344433356788888887777777777777764 344555554
No 403
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=39.14 E-value=78 Score=28.87 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=42.4
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a 113 (301)
..|+||+|.++........+...|++.|.+...+ +++..+. ..+...+ .-+..|.++...|..
T Consensus 118 ~DLkGK~Iav~~~s~~~~~l~~~L~~~Gl~~~dv---~~v~~~~-~~~~~Al-~~G~VDAa~~~~p~~ 180 (320)
T PRK11480 118 EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQV---EIVNLQP-PAIIAAW-QRGDIDGAYVWAPAV 180 (320)
T ss_pred HHcCCCEEecCCCCchHHHHHHHHHHcCCCHhhe---EEEECCc-HHHHHHH-HcCCcCEEEEcchHH
Confidence 4689999999876655556778899999987543 3333332 3344455 347889888777654
No 404
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=39.13 E-value=4.3e+02 Score=26.85 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=57.8
Q ss_pred CEEEEEcCCcChhHHHHHHHhCCCeeEEEee------------eeeeeCCCCcHHHHHH--cCCCCEEEEEChHHHHHH-
Q 022176 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNT------------YTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSW- 243 (301)
Q Consensus 179 ~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~v------------Y~~~~~~~~~~~~~~~--~~~~d~I~ftS~sav~~~- 243 (301)
.+++++....-...+.+.|++.|.++.-++. |....-+....+++++ +++.+.++.+..+.-.+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~ 480 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQ 480 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHH
Confidence 5788887777777888888888876644321 1111111122234443 357888888766544433
Q ss_pred -HHhhhcccCCCceEE--EECHHHHHHHHHcCCCeeE
Q 022176 244 -VNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVY 277 (301)
Q Consensus 244 -~~~l~~~~~~~~~i~--aIG~~Ta~al~~~G~~~~~ 277 (301)
....++.. .+.+++ +-.+..++.+++.|...++
T Consensus 481 i~~~ar~~~-p~~~iiaRa~d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 481 LVELVKEHF-PHLQIIARARDVDHYIRLRQAGVEKPE 516 (621)
T ss_pred HHHHHHHhC-CCCeEEEEECCHHHHHHHHHCCCCEEe
Confidence 23333322 244444 5678888889999998754
No 405
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=39.11 E-value=1.5e+02 Score=25.75 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEchh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG~~ 137 (301)
.-+.+.++++|..+.....+......+ ...+.+.+..-...+.|++++-.....+++.+.+.+. .++.+++.+..
T Consensus 145 ~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~~l~~~g~~ip~~i~ii~~d~~ 224 (275)
T cd06295 145 EGYREALAEAGLPLDPRLVAPGDFTEESGRAAMRALLERGPDFDAVFAASDLMALGALRALREAGRRVPEDVAVVGFDDI 224 (275)
T ss_pred HHHHHHHHHcCCCCChhhEEeccCCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCccceEEEeeCCc
Confidence 345566667775433221211111111 1234444433345788888876655566677776664 36677777755
Q ss_pred h
Q 022176 138 T 138 (301)
Q Consensus 138 T 138 (301)
.
T Consensus 225 ~ 225 (275)
T cd06295 225 P 225 (275)
T ss_pred h
Confidence 4
No 406
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=39.09 E-value=70 Score=29.68 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=48.6
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEE-EeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHH
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~-~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~ 116 (301)
.++.|++|+..-.-...+.+.+.|++.|+++. ....-+...-. ...++.........++|+-|-+-+|+.
T Consensus 223 ~~l~~~~v~a~sGIg~P~~F~~~L~~~G~~~~~~~~f~DHh~yt-~~dl~~l~~~a~~~~~iltTeKDaVKl 293 (326)
T PF02606_consen 223 EPLKGKPVLAFSGIGNPERFFDTLESLGIEVVGTLAFPDHHRYT-EQDLEKLEAEAKAAGIILTTEKDAVKL 293 (326)
T ss_pred hhccCCeeEEEEEcCChHHHHHHHHHcCCeEEEeeECCCCCCCC-HHHHHHHHHhhcccceEEecHHHHhhC
Confidence 45889999988888889999999999999988 44444444332 133444332223333888899999984
No 407
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=38.89 E-value=63 Score=27.57 Aligned_cols=27 Identities=11% Similarity=0.375 Sum_probs=20.8
Q ss_pred HHHHHHcCCCCEEEEECh-------HHHHHHHHh
Q 022176 220 QTVLKQALSIPVVAVASP-------SAVRSWVNL 246 (301)
Q Consensus 220 ~~~~~~~~~~d~I~ftS~-------sav~~~~~~ 246 (301)
+.+.+.+.+.|+|+|-|| ...++|++.
T Consensus 67 ~~i~~~l~~aD~iI~gsPvy~g~vsa~~K~fiDR 100 (207)
T COG0655 67 NEIYEKLLEADGIIFGSPVYFGNVSAQMKAFIDR 100 (207)
T ss_pred HHHHHHHHHCCEEEEeCCeecCCchHHHHHHHhh
Confidence 345555678999999997 678888887
No 408
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=38.84 E-value=1.1e+02 Score=26.38 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=50.3
Q ss_pred CCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHH
Q 022176 227 LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 292 (301)
Q Consensus 227 ~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~ 292 (301)
..+|.|++.++..++.+.+....... .+...-+.-..+++.+.+.|+..++.+.+-+.+.|-+...
T Consensus 14 ~g~dgi~v~~~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~ 80 (233)
T PF01136_consen 14 LGVDGILVSNPGLLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLSPELSLEEIKEIAE 80 (233)
T ss_pred CCCCEEEEcCHHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEECccCCHHHHHHHHH
Confidence 48999999999999999877543221 1334445678899999999999988888888887776443
No 409
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=38.75 E-value=3.4e+02 Score=25.56 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=26.5
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.+..+++||||-..+ -+..+++.|.++|++|..+
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l 90 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAV 90 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 367788999998765 3567888898999988654
No 410
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=38.71 E-value=2.5e+02 Score=24.06 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=30.2
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
..+++++. |+.+.+.....+.+. +++.+.... -..+++.+........+.+.+.|+.+..+
T Consensus 21 ~~~~a~~~------g~~~~~~~~~~~~~~~~~~i~~~~~~~---vdgii~~~~~~~~~~~~~~~~~~ipvV~~ 84 (268)
T cd06270 21 VESVARKA------GKHLIITAGHHSAEKEREAIEFLLERR---CDALILHSKALSDDELIELAAQVPPLVLI 84 (268)
T ss_pred HHHHHHHC------CCEEEEEeCCCchHHHHHHHHHHHHcC---CCEEEEecCCCCHHHHHHHhhCCCCEEEE
Confidence 35666777 887766544433332 333333322 22233333322333356777788765444
No 411
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=38.70 E-value=3.3e+02 Score=25.35 Aligned_cols=169 Identities=11% Similarity=0.073 Sum_probs=85.6
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhH----------HHHHHHhhcccCCCce-----eecCCC---C
Q 022176 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA----------SIFEEVIQSSKCSLDV-----AFSPSK---A 162 (301)
Q Consensus 101 ~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta----------~~L~~~~~~~~~G~~~-----~~~p~~---~ 162 (301)
...|.++..|....+.+. +.+.+.-++.++|.... ..+++.+ |+.. -+++.. .
T Consensus 149 ~~~d~~~~~s~~~~~~l~----~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~-----gl~~~~~~il~~Gg~~g~~ 219 (382)
T PLN02605 149 KGVTRCFCPSEEVAKRAL----KRGLEPSQIRVYGLPIRPSFARAVRPKDELRREL-----GMDEDLPAVLLMGGGEGMG 219 (382)
T ss_pred CCCCEEEECCHHHHHHHH----HcCCCHHHEEEECcccCHhhccCCCCHHHHHHHc-----CCCCCCcEEEEECCCcccc
Confidence 578888888876655433 44555455666664442 2233332 5542 122211 1
Q ss_pred cHHHHHHHhccCC------CCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEC
Q 022176 163 TGKILASELPKNG------KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (301)
Q Consensus 163 ~~e~L~~~l~~~~------~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS 236 (301)
..+.+++.+.... ..+.++++++|.+ +.+.+.|++..... .+.+.-.+ + ++.+.+...|+++..|
T Consensus 220 ~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~--~~~~~~L~~~~~~~-~v~~~G~~--~----~~~~l~~aaDv~V~~~ 290 (382)
T PLN02605 220 PLEETARALGDSLYDKNLGKPIGQVVVICGRN--KKLQSKLESRDWKI-PVKVRGFV--T----NMEEWMGACDCIITKA 290 (382)
T ss_pred cHHHHHHHHHHhhccccccCCCceEEEEECCC--HHHHHHHHhhcccC-CeEEEecc--c----cHHHHHHhCCEEEECC
Confidence 2344555554321 1234567777754 34555665542111 11111111 1 1222245678888654
Q ss_pred hHHHHHHHHhhhcccCCCceEEEEC------HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 237 PSAVRSWVNLISDTEQWSNSVACIG------ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 237 ~sav~~~~~~l~~~~~~~~~i~aIG------~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
... ...+.+.. ++++++.. ...++.+.+.|... . + .+.+++.++|.+.+.+
T Consensus 291 g~~--ti~EAma~----g~PvI~~~~~pgqe~gn~~~i~~~g~g~-~-~--~~~~~la~~i~~ll~~ 347 (382)
T PLN02605 291 GPG--TIAEALIR----GLPIILNGYIPGQEEGNVPYVVDNGFGA-F-S--ESPKEIARIVAEWFGD 347 (382)
T ss_pred Ccc--hHHHHHHc----CCCEEEecCCCccchhhHHHHHhCCcee-e-c--CCHHHHHHHHHHHHcC
Confidence 321 23444432 56777765 23456677777643 2 2 5789999998887754
No 412
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=38.69 E-value=63 Score=25.44 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=32.6
Q ss_pred hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc-CCCccEEEEeChHHHH
Q 022176 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIITSPEAGS 115 (301)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~-l~~~d~IiftS~~av~ 115 (301)
...+.+.|++.|+++...+.. + +|.+.+.+.+.+ +.++|.||.|-..++.
T Consensus 21 ~~~l~~~l~~~G~~v~~~~~v---~-Dd~~~i~~~i~~~~~~~DlvittGG~g~g 71 (133)
T cd00758 21 GPALEALLEDLGCEVIYAGVV---P-DDADSIRAALIEASREADLVLTTGGTGVG 71 (133)
T ss_pred HHHHHHHHHHCCCEEEEeeec---C-CCHHHHHHHHHHHHhcCCEEEECCCCCCC
Confidence 457778899999887654333 2 344566666644 3569988887665543
No 413
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=38.62 E-value=1.2e+02 Score=28.32 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=19.2
Q ss_pred CEEEEEcCCcChhHHHHHHHhCCCeeEEEeee
Q 022176 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 179 ~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY 210 (301)
++|+++.|..-...|....++.|+.|..+..+
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~ 34 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPD 34 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45666666655566666666666665544433
No 414
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=38.46 E-value=1.5e+02 Score=25.98 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=56.8
Q ss_pred EEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCC---cHHHHHHHhccCCCCCCEE
Q 022176 105 WIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA---TGKILASELPKNGKKKCTV 181 (301)
Q Consensus 105 ~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~---~~e~L~~~l~~~~~~~~~v 181 (301)
++.+...+-....++.+++.+.+.--+++-|..|.--+..-+=.+..-++-.+.|++. .-+.+.+.+.+.. ++ ++
T Consensus 93 Y~d~~dK~~~~~~f~klK~iW~~rdilIVEG~~sR~GvgnDLFdnaksI~rIicPsknAf~~~d~I~~~i~~~~-~~-~L 170 (225)
T PF08759_consen 93 YIDYKDKSKSARYFEKLKQIWKDRDILIVEGEKSRSGVGNDLFDNAKSIKRIICPSKNAFSKYDEILEAIKKYA-KD-KL 170 (225)
T ss_pred eeecccchHHHHHHHHHHHHhCCCcEEEEecCCeecCCCchhhhCccceEEEECCchhhHHHHHHHHHHHHHhC-CC-cE
Confidence 3445555556656677777655566678888888554433222233344445667642 2345556665542 33 44
Q ss_pred EEEcCCcChhHHHHHHHhCCCeeE
Q 022176 182 LYPASAKASNEIEEGLSNRGFEVV 205 (301)
Q Consensus 182 Li~rg~~~~~~L~~~L~~~G~~v~ 205 (301)
+++.=......|+-.|.+.|.++.
T Consensus 171 iLiaLGPTAtVLayDL~~~G~qai 194 (225)
T PF08759_consen 171 ILIALGPTATVLAYDLSKLGYQAI 194 (225)
T ss_pred EEEecCCcchhhHHHHHhcCCeeE
Confidence 433333455689999999997653
No 415
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=38.42 E-value=79 Score=29.57 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=40.9
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHH-HHHHhcCCCccEEEEe
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRL-SSVLNADTIFDWIIIT 109 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l-~~~l~~l~~~d~Iift 109 (301)
..+.+++||+.-..+-+...++.|.++|+.-+.+---+....+ .+.+ .+.+.-+..+|+||+.
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~-~~~~~~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP-YRTVVREELSFQDPYDVIFFG 233 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc-hhhhhhhhhhcccCCCEEEEc
Confidence 3578999999999888999999999999764433222222211 2222 1233335789999874
No 416
>PLN02461 Probable pyruvate kinase
Probab=38.41 E-value=1.3e+02 Score=29.89 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=44.9
Q ss_pred CEEEEE-ChHHHHHHHHhhhcccCCCceEEEEC---------------HHHHHHHHHc-CCCeeEecC------CCCHHH
Q 022176 230 PVVAVA-SPSAVRSWVNLISDTEQWSNSVACIG---------------ETTASAAKRL-GLKNVYYPT------HPGLEG 286 (301)
Q Consensus 230 d~I~ft-S~sav~~~~~~l~~~~~~~~~i~aIG---------------~~Ta~al~~~-G~~~~~v~~------~ps~e~ 286 (301)
-+|+|| |..+++.+..+-+ .++++++- +.+++.|.-+ |+.+.+... ..+.+.
T Consensus 398 aIiv~T~sG~tA~~iSk~RP-----~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~~~~ 472 (511)
T PLN02461 398 LIVVLTRGGTTARLVAKYRP-----AVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEE 472 (511)
T ss_pred EEEEECCCcHHHHHHHhhCC-----CCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCCHHH
Confidence 367777 6778777766543 46677774 6888887764 888865543 357788
Q ss_pred HHHHHHHHHHccC
Q 022176 287 WVDSILEALREHG 299 (301)
Q Consensus 287 ll~ai~~~~~~~~ 299 (301)
+++...+++++.+
T Consensus 473 ~i~~a~~~~~~~g 485 (511)
T PLN02461 473 ILEAAIEHAKKKG 485 (511)
T ss_pred HHHHHHHHHHHcC
Confidence 8888888876543
No 417
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=38.33 E-value=4e+02 Score=26.28 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=79.8
Q ss_pred CchHHHHHHHHhCCCcEEEe-ceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEc-h
Q 022176 60 GKNGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-A 136 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~-P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~-~~~~~~~i~avG-~ 136 (301)
.+..++...|++.|+++..+ |. ....++ |.++...+.-|..++..-....++|++ .+.+-+...=+| .
T Consensus 175 ~D~~elkrlL~~lGi~vn~v~p~-----g~s~~d----l~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG~~ 245 (511)
T TIGR01278 175 HDLIELRRLLKTLGIEVNVVAPW-----GASIAD----LARLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIGVN 245 (511)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCC-----CCCHHH----HHhcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccCHH
Confidence 35689999999999999764 52 112222 335566666666777655556666654 344433334566 5
Q ss_pred hhHHHHHHHhhc-ccCCCceeecCCCCcHHH---------HHHHhccCCCCCCEEEEEcCCcChhHHHHHHH-hCCCeeE
Q 022176 137 GTASIFEEVIQS-SKCSLDVAFSPSKATGKI---------LASELPKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVV 205 (301)
Q Consensus 137 ~Ta~~L~~~~~~-~~~G~~~~~~p~~~~~e~---------L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~-~~G~~v~ 205 (301)
.|.+.|++.... +..|+.+.. +.+-.+. +...+......|+|+++..+..-.-.+...|. +.|.+|.
T Consensus 246 ~T~~fL~~l~~~~~~~g~~~~~--e~~i~~e~~~~~~~~~~~r~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ElG~~vv 323 (511)
T TIGR01278 246 ATRRFIREIAALLNQAGADPYY--ESFILDGLSAVSQAAWFARSIDSQSLTGKRAFVFGDATHAVGMTKILARELGIHIV 323 (511)
T ss_pred HHHHHHHHHHHHHhhcCCCCcH--HHHHHhhhhhhhhHHHHHhhhhhHHhcCCeEEEEcCcHHHHHHHHHHHHhCCCEEE
Confidence 677777776210 111333210 0000000 00011111236789998888777778888997 8999986
Q ss_pred EEeeee
Q 022176 206 RLNTYT 211 (301)
Q Consensus 206 ~~~vY~ 211 (301)
..-+|.
T Consensus 324 ~~gt~~ 329 (511)
T TIGR01278 324 GAGTYC 329 (511)
T ss_pred ecCCch
Confidence 655554
No 418
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=38.30 E-value=2.2e+02 Score=27.92 Aligned_cols=74 Identities=20% Similarity=0.112 Sum_probs=45.0
Q ss_pred chHHHHHHHHhCC-CcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH----HHHHHHHHHHcCCCCceEEEEc
Q 022176 61 KNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA----GSVFLEAWKEAGTPNVRIGVVG 135 (301)
Q Consensus 61 ~~~~l~~~L~~~G-~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a----v~~f~~~l~~~~~~~~~i~avG 135 (301)
.-.-++..|++.| .+|..+-... .+.+ .+.+.+.+ .-..+|.|.||+... +..+.+.+++. .+++++++=|
T Consensus 24 gl~~lAa~L~~~G~~~V~iiD~~~-~~~~-~~~~~~~l-~~~~pdvVgis~~t~~~~~a~~~~~~~k~~-~P~~~iV~GG 99 (497)
T TIGR02026 24 WVAYIGGALLDAGYHDVTFLDAMT-GPLT-DEKLVERL-RAHCPDLVLITAITPAIYIACETLKFARER-LPNAIIVLGG 99 (497)
T ss_pred HHHHHHHHHHhcCCcceEEecccc-cCCC-HHHHHHHH-HhcCcCEEEEecCcccHHHHHHHHHHHHHH-CCCCEEEEcC
Confidence 3457777899999 6888776542 3222 24455555 235799999987533 22233333332 3578888888
Q ss_pred hhh
Q 022176 136 AGT 138 (301)
Q Consensus 136 ~~T 138 (301)
+..
T Consensus 100 ~h~ 102 (497)
T TIGR02026 100 IHP 102 (497)
T ss_pred CCc
Confidence 753
No 419
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=38.29 E-value=2e+02 Score=24.17 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=45.9
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH--HH------HHHHH
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS--VF------LEAWK 122 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~--~f------~~~l~ 122 (301)
|+|.|.--.+........|+..|+++..++. + + .+.+||.||++-..... .. .+.++
T Consensus 2 m~~~i~~~~g~~~~~~~~l~~~g~~~~~~~~------~--~-------~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~ 66 (189)
T PRK13525 2 MKIGVLALQGAVREHLAALEALGAEAVEVRR------P--E-------DLDEIDGLILPGGESTTMGKLLRDFGLLEPLR 66 (189)
T ss_pred CEEEEEEcccCHHHHHHHHHHCCCEEEEeCC------h--h-------HhccCCEEEECCCChHHHHHHHHhccHHHHHH
Confidence 4555554445566677889999999887762 1 1 34679999999875422 11 01111
Q ss_pred HcCCCCceEEEEchhhHHHHHHH
Q 022176 123 EAGTPNVRIGVVGAGTASIFEEV 145 (301)
Q Consensus 123 ~~~~~~~~i~avG~~Ta~~L~~~ 145 (301)
+....+.+++.|--+- +.|-+.
T Consensus 67 ~~~~~g~PilGIC~G~-QlL~~~ 88 (189)
T PRK13525 67 EFIASGLPVFGTCAGM-ILLAKE 88 (189)
T ss_pred HHHHCCCeEEEECHHH-HHHHhh
Confidence 1112366777776654 444443
No 420
>PRK09739 hypothetical protein; Provisional
Probab=38.25 E-value=46 Score=28.15 Aligned_cols=57 Identities=14% Similarity=0.286 Sum_probs=38.5
Q ss_pred hHHHHHHHhCCCeeEEEeeeeeeeC------------------CCCcHHHHHHcCCCCEEEEECh-------HHHHHHHH
Q 022176 191 NEIEEGLSNRGFEVVRLNTYTTEPV------------------HHVDQTVLKQALSIPVVAVASP-------SAVRSWVN 245 (301)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~------------------~~~~~~~~~~~~~~d~I~ftS~-------sav~~~~~ 245 (301)
+.+.+.|++.|.+++.+.+|+.... .+...+.++.+...|.|+|.+| ..++.|++
T Consensus 24 ~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD 103 (199)
T PRK09739 24 EAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLWWYSFPAMLKGYID 103 (199)
T ss_pred HHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchhhhcchHHHHHHHH
Confidence 4566777888888988888874210 0011233444678999999987 67788887
Q ss_pred hh
Q 022176 246 LI 247 (301)
Q Consensus 246 ~l 247 (301)
.+
T Consensus 104 ~v 105 (199)
T PRK09739 104 RV 105 (199)
T ss_pred HH
Confidence 75
No 421
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=38.18 E-value=85 Score=29.47 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=40.1
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a 113 (301)
|.+|+++-|.= .......+..|+++..+|+-. ...|.+.+...+.+ +.+.|++.+||-
T Consensus 99 gd~vl~~~Ptf--~~Y~~~a~~~g~~~~~v~~~~--~~~d~~~~~~~~~~--~~~lv~i~nPNN 156 (356)
T COG0079 99 GDTVLIPEPTF--SMYEIAAQLAGAEVVKVPLKE--FRLDLDAILAAIRD--KTKLVFLCNPNN 156 (356)
T ss_pred CCEEEEcCCCh--HHHHHHHHhcCCeEEEecccc--cccCHHHHHHhhhc--CCCEEEEeCCCC
Confidence 45788888763 556666777899999999887 33344444444422 689999998874
No 422
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=38.14 E-value=1e+02 Score=30.67 Aligned_cols=82 Identities=21% Similarity=0.034 Sum_probs=0.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCc
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~ 129 (301)
|-+=++.-|..++..|+-++.++. ++...--++-+...-.. .-.-+.-+..-+||.||..|+..|...+.+.+..++
T Consensus 22 GV~~vvicPGSRSTPLala~~~~~-~i~~hv~~DERsagFfA--LGlAKas~rPVavi~TSGTA~ANl~PAViEA~~srv 98 (566)
T COG1165 22 GVRDVVICPGSRSTPLALAAAAHD-AITVHVHIDERSAGFFA--LGLAKASKRPVAVICTSGTAVANLYPAVIEANLSRV 98 (566)
T ss_pred CCcEEEECCCCCCcHHHHHHHhcC-CeEEEEecccchHHHHH--HhhhhhcCCCEEEEEcCcchhhhccHHHHhhhhcCC
Q ss_pred eEEEE
Q 022176 130 RIGVV 134 (301)
Q Consensus 130 ~i~av 134 (301)
++++.
T Consensus 99 pLIVL 103 (566)
T COG1165 99 PLIVL 103 (566)
T ss_pred ceEEE
No 423
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=38.11 E-value=3.4e+02 Score=25.32 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=46.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcC--C-CCEEEEE
Q 022176 164 GKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL--S-IPVVAVA 235 (301)
Q Consensus 164 ~e~L~~~l~~~~~~~~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~--~-~d~I~ft 235 (301)
+..++..+... +-++|.++..+.. ...+.+.|++.|+++.....|... +.+....+..++ . .++|++.
T Consensus 120 ~~~~~~~~~~~--~w~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~--~~d~~~~L~~lk~~~~~~viv~~ 195 (382)
T cd06371 120 SRVLFTVLRYF--RWAHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMGPD--EKGAREALKKVRSADRVRVVIMC 195 (382)
T ss_pred HHHHHHHHHHC--CCeEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEEecCC--HHHHHHHHHHHhcCCCcEEEEEE
Confidence 45565544332 2256666644332 467889999999877655444321 112223333332 3 5777764
Q ss_pred Ch------HHHHHHHHhhhccc
Q 022176 236 SP------SAVRSWVNLISDTE 251 (301)
Q Consensus 236 S~------sav~~~~~~l~~~~ 251 (301)
.. ..+..++..+.+.+
T Consensus 196 ~~~~~~~~~~~~~i~~qa~~~G 217 (382)
T cd06371 196 MHSVLIGGEEQRLLLETALEMG 217 (382)
T ss_pred eeccccCcHHHHHHHHHHHHcC
Confidence 43 45567777776654
No 424
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=37.86 E-value=12 Score=31.68 Aligned_cols=56 Identities=21% Similarity=0.419 Sum_probs=38.6
Q ss_pred hHHHHHHHhCC-CeeEEEeeeeeeeCCCCcH------------------HH-HHHcCCCCEEEEEC-------hHHHHHH
Q 022176 191 NEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQ------------------TV-LKQALSIPVVAVAS-------PSAVRSW 243 (301)
Q Consensus 191 ~~L~~~L~~~G-~~v~~~~vY~~~~~~~~~~------------------~~-~~~~~~~d~I~ftS-------~sav~~~ 243 (301)
+.+.+.|++.| .+|..+.+|+. ..+.... .. ++.+...|.|+|.. |..++.|
T Consensus 22 ~~~~~~~~~~~~~~v~~~dL~~~-~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD~iV~~~Pl~~~~~Pa~lK~~ 100 (199)
T PF02525_consen 22 DAFLEGLQEAGPHEVEIRDLYEE-FLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWADHIVFAFPLYWFSMPAQLKGW 100 (199)
T ss_dssp HHHHHHHHHHTTSEEEEEETTTT-T--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHSSEEEEEEEEBTTBC-HHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEECccc-ccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHcCcceEeccceecccChhHHHH
Confidence 56788899999 89999999996 2221110 01 23456788888865 6899999
Q ss_pred HHhh
Q 022176 244 VNLI 247 (301)
Q Consensus 244 ~~~l 247 (301)
++.+
T Consensus 101 iD~v 104 (199)
T PF02525_consen 101 IDRV 104 (199)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9986
No 425
>PRK07206 hypothetical protein; Provisional
Probab=37.77 E-value=3.5e+02 Score=25.45 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=24.2
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEe
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~ 79 (301)
+++||+.-+......+++.++++|++++.+
T Consensus 2 ~k~~liv~~~~~~~~~~~a~~~~G~~~v~v 31 (416)
T PRK07206 2 MKKVVIVDPFSSGKFLAPAFKKRGIEPIAV 31 (416)
T ss_pred CCeEEEEcCCchHHHHHHHHHHcCCeEEEE
Confidence 467888877777778999999999987754
No 426
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.65 E-value=3.2e+02 Score=24.85 Aligned_cols=150 Identities=14% Similarity=0.100 Sum_probs=81.9
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHh---cCCCccEEEEeChH--HHH--HHHHHHHHc-CCCCceEEEEc
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPE--AGS--VFLEAWKEA-GTPNVRIGVVG 135 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~---~l~~~d~IiftS~~--av~--~f~~~l~~~-~~~~~~i~avG 135 (301)
.-.+..++.|+++..+-+-+.. ..+++.+.++ .....|.|++--|- ..+ ..++.+... ..|++.-.-+|
T Consensus 46 ~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g 122 (279)
T PRK14178 46 MKHRACERVGIGSVGIELPGDA---TTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLG 122 (279)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHH
Confidence 3455677789887755442221 2234444443 35678899888772 222 122222111 01232222222
Q ss_pred hhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcCC-cChhHHHHHHHhCCCeeEEEeeeee
Q 022176 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASA-KASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~-~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
. |- . |-. .+.| -|+.+.++.|.... ..|++++++.-. .....|...|...|+.|+.+.-..
T Consensus 123 ~-----l~-~------~~~-~~~P--cTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t- 186 (279)
T PRK14178 123 R-----LV-S------GLP-GFAP--CTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT- 186 (279)
T ss_pred H-----Hh-C------CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-
Confidence 1 11 1 321 2444 37888877776543 368888776555 556778888999999886654321
Q ss_pred eeCCCCcHHHHHHcCCCCEEEEEChHH
Q 022176 213 EPVHHVDQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~I~ftS~sa 239 (301)
..+.+...+.|+|+-+-+..
T Consensus 187 -------~~L~~~~~~ADIvI~Avgk~ 206 (279)
T PRK14178 187 -------ENLKAELRQADILVSAAGKA 206 (279)
T ss_pred -------hHHHHHHhhCCEEEECCCcc
Confidence 12333356789888887655
No 427
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=37.64 E-value=1.7e+02 Score=25.29 Aligned_cols=32 Identities=31% Similarity=0.264 Sum_probs=25.3
Q ss_pred CCeEEEeCCCC--chHHHHHHHHhCCCcEEEece
Q 022176 50 NPKVVVTRERG--KNGKLIKALAKHRIDCLELPL 81 (301)
Q Consensus 50 g~~IlitR~~~--~~~~l~~~L~~~G~~v~~~P~ 81 (301)
.+-|.|.|..+ +..++++.|-+.|++++++++
T Consensus 8 ~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~ 41 (204)
T TIGR01182 8 AKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTL 41 (204)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 35566777664 556888999999999999988
No 428
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=37.56 E-value=59 Score=28.87 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=27.7
Q ss_pred CccEEEEeChHHHHHH----HHHHHHcCCCCceEEEEchhh----HHHHHHHhhcccCCCceeecC
Q 022176 102 IFDWIIITSPEAGSVF----LEAWKEAGTPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSP 159 (301)
Q Consensus 102 ~~d~IiftS~~av~~f----~~~l~~~~~~~~~i~avG~~T----a~~L~~~~~~~~~G~~~~~~p 159 (301)
+.|.+||.|||++.-- -+.|.. .+++.++||... .+.|++. |+--.+++
T Consensus 59 ~pdf~I~isPN~~~PGP~~ARE~l~~---~~iP~IvI~D~p~~k~kd~l~~~------g~GYIivk 115 (276)
T PF01993_consen 59 DPDFVIVISPNAAAPGPTKAREMLSA---KGIPCIVISDAPTKKAKDALEEE------GFGYIIVK 115 (276)
T ss_dssp --SEEEEE-S-TTSHHHHHHHHHHHH---SSS-EEEEEEGGGGGGHHHHHHT------T-EEEEET
T ss_pred CCCEEEEECCCCCCCCcHHHHHHHHh---CCCCEEEEcCCCchhhHHHHHhc------CCcEEEEe
Confidence 6899999999997642 233333 467888887665 5666666 66544444
No 429
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=37.45 E-value=56 Score=25.75 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=26.3
Q ss_pred EECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHH
Q 022176 259 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 292 (301)
Q Consensus 259 aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~ 292 (301)
-||+...+.|+++|+++. .++.-+.+..++++.
T Consensus 73 ~iG~~a~~~l~~~GIkv~-~~~~~~V~e~i~~~~ 105 (121)
T COG1433 73 NIGPNAYNALKAAGIKVY-VAPGGTVEEAIKAFL 105 (121)
T ss_pred ccCHHHHHHHHHcCcEEE-ecCCCCHHHHHHHHh
Confidence 489999999999999874 455577887777664
No 430
>PRK05611 rpmD 50S ribosomal protein L30; Reviewed
Probab=37.36 E-value=57 Score=22.13 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=29.5
Q ss_pred ECHHHHHHHHHcCCC----eeEecCCCCHHHHHHHHHHHH
Q 022176 260 IGETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEAL 295 (301)
Q Consensus 260 IG~~Ta~al~~~G~~----~~~v~~~ps~e~ll~ai~~~~ 295 (301)
..+...+.++.+|++ .+++++.|+..+|++.+..++
T Consensus 15 ~~~~~r~tl~~LgL~k~~~~v~~~dtp~~rGmi~kV~~lV 54 (59)
T PRK05611 15 RKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLV 54 (59)
T ss_pred CCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHhhE
Confidence 356778889999986 367799999999999998765
No 431
>PRK13556 azoreductase; Provisional
Probab=37.30 E-value=95 Score=26.44 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=35.9
Q ss_pred HHHHHHHhC--CCeeEEEeeeeeeeCCCCc--------------------------HHHHHHcCCCCEEEEECh------
Q 022176 192 EIEEGLSNR--GFEVVRLNTYTTEPVHHVD--------------------------QTVLKQALSIPVVAVASP------ 237 (301)
Q Consensus 192 ~L~~~L~~~--G~~v~~~~vY~~~~~~~~~--------------------------~~~~~~~~~~d~I~ftS~------ 237 (301)
.+.+.+++. |.+|..+.+|+...+.... .++++.+...|.|+|.+|
T Consensus 25 ~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iVi~~P~yn~~~ 104 (208)
T PRK13556 25 AFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVADKYLNQFLEADKVVFAFPLWNFTI 104 (208)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHCCEEEEeccccccCC
Confidence 444566654 7888888888643211110 112233467899999997
Q ss_pred -HHHHHHHHhhhc
Q 022176 238 -SAVRSWVNLISD 249 (301)
Q Consensus 238 -sav~~~~~~l~~ 249 (301)
..++.|++.+-.
T Consensus 105 Pa~LK~~iD~v~~ 117 (208)
T PRK13556 105 PAVLHTYIDYLNR 117 (208)
T ss_pred cHHHHHHHHHHhc
Confidence 678888887654
No 432
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=37.25 E-value=2.5e+02 Score=23.96 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=47.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCcC-----hhHHHHHHHhC-CCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEECh
Q 022176 164 GKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (301)
Q Consensus 164 ~e~L~~~l~~~~~~~~~vLi~rg~~~-----~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~ 237 (301)
.+.|.+.+.+....+.+|+|+..... -....+.+++. |+++..+.+.. . +...+.+...|+|+++-.
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~----~---~~~~~~l~~ad~I~l~GG 89 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD----T---EDPLDALLEADVIYVGGG 89 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC----c---ccHHHHHhcCCEEEECCc
Confidence 34444444443334578888776654 22467788888 98887776654 1 122334568999999997
Q ss_pred HHHHHHHHhhhc
Q 022176 238 SAVRSWVNLISD 249 (301)
Q Consensus 238 sav~~~~~~l~~ 249 (301)
+..+ +++.+++
T Consensus 90 ~~~~-~~~~l~~ 100 (212)
T cd03146 90 NTFN-LLAQWRE 100 (212)
T ss_pred hHHH-HHHHHHH
Confidence 5544 4444443
No 433
>PLN02672 methionine S-methyltransferase
Probab=37.20 E-value=4.4e+02 Score=28.87 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=42.4
Q ss_pred CCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCC--CCEEEEEChH-----------HHHH
Q 022176 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALS--IPVVAVASPS-----------AVRS 242 (301)
Q Consensus 176 ~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~--~d~I~ftS~s-----------av~~ 242 (301)
..|..|+++.+ .-.......+..|+++..+++........+.+.+.+.+.+ -.+|++.+|. ..+.
T Consensus 776 ~pGD~VLVp~P--tY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~ 853 (1082)
T PLN02672 776 QEGGTLCFPAG--SNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEE 853 (1082)
T ss_pred CCCCEEEEeCC--ChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHH
Confidence 35678888887 3345566677788888888774211122222333333322 3467777775 6677
Q ss_pred HHHhhhcc
Q 022176 243 WVNLISDT 250 (301)
Q Consensus 243 ~~~~l~~~ 250 (301)
+++.++++
T Consensus 854 Llela~k~ 861 (1082)
T PLN02672 854 ILSVCAKY 861 (1082)
T ss_pred HHHHHHHc
Confidence 77666553
No 434
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=37.10 E-value=84 Score=27.20 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC--CceEEEEchh
Q 022176 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP--NVRIGVVGAG 137 (301)
Q Consensus 92 ~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~--~~~i~avG~~ 137 (301)
.+.+.+......++|+..+-..+...++.+.+.+.. ++.|++.+..
T Consensus 173 ~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~~di~ivg~d~~ 220 (272)
T cd06301 173 LMENWLSSGGKIDAVVANNDEMALGAIMALKAAGKSDKDVPVAGIDGT 220 (272)
T ss_pred HHHHHHHhCCCCCEEEECCCchHHHHHHHHHHcCCCCCCcEEEeeCCC
Confidence 344445444567888877777766777888777754 5566666443
No 435
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.05 E-value=1.8e+02 Score=25.10 Aligned_cols=74 Identities=16% Similarity=0.116 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCC----chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEch
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPD----TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d----~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG~ 136 (301)
-+.+.++++|..+...+........+ .+.+.+.++.-...|.|+.+|-..+..+++.+.+.+. +++.+++.+.
T Consensus 129 gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vigfd~ 208 (265)
T cd01543 129 AFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSLPKPVGIFACTDARARQLLEACRRAGIAVPEEVAVLGVDN 208 (265)
T ss_pred HHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcCCCCcEEEecChHHHHHHHHHHHHhCCCCCCceEEEeeCC
Confidence 44556777776653222211111111 1234444433345788888887777777777777664 3666776664
Q ss_pred h
Q 022176 137 G 137 (301)
Q Consensus 137 ~ 137 (301)
.
T Consensus 209 ~ 209 (265)
T cd01543 209 D 209 (265)
T ss_pred c
Confidence 4
No 436
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=36.89 E-value=1.4e+02 Score=26.68 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=26.1
Q ss_pred HHHHhccCCCCCCEEEEEcCCcCh----hHHHHHHHhCCCeeEEE
Q 022176 167 LASELPKNGKKKCTVLYPASAKAS----NEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 167 L~~~l~~~~~~~~~vLi~rg~~~~----~~L~~~L~~~G~~v~~~ 207 (301)
|-+.+.+. ..++++++.+.... +.+.+.|+..|+++..+
T Consensus 10 l~~~l~~~--~~~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~ 52 (250)
T PF13685_consen 10 LPEILSEL--GLKKVLVVTDENTYKAAGEKVEESLKSAGIEVAVI 52 (250)
T ss_dssp HHHHHGGG--T-SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEE
T ss_pred HHHHHHhc--CCCcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 43444444 24799999998864 46778899999888744
No 437
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=36.79 E-value=93 Score=22.90 Aligned_cols=55 Identities=9% Similarity=0.185 Sum_probs=40.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~ 111 (301)
...|++.....++.+++..|++.++.. | .++.. |.+.+...+ +-.+|+|.++++.
T Consensus 23 ~~~Vl~FE~edDA~RYa~lLEAqd~~~---p--~Ve~i-d~~~i~~fC-~~~gy~~~iv~~g 77 (86)
T PF11360_consen 23 RNVVLMFEDEDDAERYAGLLEAQDFPD---P--TVEEI-DPEEIEEFC-RSAGYEYEIVPPG 77 (86)
T ss_pred CCEEEEEccHHHHHHHHHHHHhcCCCC---C--CeEEE-CHHHHHHHH-HHCCceEEEECCC
Confidence 456788888889999999999888732 3 33433 335666666 4478999999876
No 438
>PRK12359 flavodoxin FldB; Provisional
Probab=36.78 E-value=2.5e+02 Score=23.40 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=51.1
Q ss_pred EEEEeChHHHHHHH-HHHHH-cCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC------CcHHHHHHHhccCCC
Q 022176 105 WIIITSPEAGSVFL-EAWKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK------ATGKILASELPKNGK 176 (301)
Q Consensus 105 ~IiftS~~av~~f~-~~l~~-~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~------~~~e~L~~~l~~~~~ 176 (301)
.|+|.|..+-...+ +.+.+ .+.+.+.+.-+...+...+.++ .+-..-.|.- .....++..|.+...
T Consensus 4 ~I~Y~S~TGNTe~vAe~I~~~lg~~~v~v~~i~~~~~~~l~~y------D~iIlG~pTw~~Gel~~d~~~~~~~l~~~dl 77 (172)
T PRK12359 4 GLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLMEQY------DVLILGIPTWDFGEIQEDWEAVWDQLDDLNL 77 (172)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCeEEEEEcccCChhHHccC------CEEEEEecccCCCcCcHHHHHHHHHHhhCCC
Confidence 46666666654333 33322 2222356666777666666655 4322222321 123445556665544
Q ss_pred CCCEEEEEcCCcCh----------hHHHHHHHhCCCeeE
Q 022176 177 KKCTVLYPASAKAS----------NEIEEGLSNRGFEVV 205 (301)
Q Consensus 177 ~~~~vLi~rg~~~~----------~~L~~~L~~~G~~v~ 205 (301)
+|+++.++...... ..|.+.|++.|+++.
T Consensus 78 ~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~iv 116 (172)
T PRK12359 78 EGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFV 116 (172)
T ss_pred CCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEE
Confidence 78888766543321 358888988898763
No 439
>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=36.74 E-value=45 Score=22.13 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=29.0
Q ss_pred ECHHHHHHHHHcCCC----eeEecCCCCHHHHHHHHHHHH
Q 022176 260 IGETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEAL 295 (301)
Q Consensus 260 IG~~Ta~al~~~G~~----~~~v~~~ps~e~ll~ai~~~~ 295 (301)
..+...+.++.+|++ .+++++.|+..+|+..+..++
T Consensus 12 ~~~~~r~tl~~LgL~k~~~~v~~~~tp~~~Gml~kV~~lV 51 (54)
T cd01658 12 RPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLV 51 (54)
T ss_pred CCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHHhheE
Confidence 356777888999986 367799999999999987764
No 440
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=36.73 E-value=99 Score=28.82 Aligned_cols=62 Identities=8% Similarity=0.029 Sum_probs=40.3
Q ss_pred CCC-eEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH
Q 022176 49 SNP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE 112 (301)
Q Consensus 49 ~g~-~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~ 112 (301)
.|. +|++..|.- ..+...++..|+++..+|+-.-....|.+.++..+.. ..+.+.|++++|+
T Consensus 114 ~g~~~Vlv~~P~y--~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~ 178 (374)
T PRK02610 114 GGEGSILVAEPTF--SMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPN 178 (374)
T ss_pred CCCCeEEEcCCCh--HHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCC
Confidence 454 688888763 4566677888999999886321123355666666532 1467888888873
No 441
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=36.71 E-value=1.8e+02 Score=21.63 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=40.3
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc
Q 022176 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (301)
Q Consensus 50 g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~ 124 (301)
.++||+.-..+- ..++.+.++++|+++. +...+ ..++.. ....+|.| +++|.-... ++.+++.
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~------v~a~~-~~~~~~---~~~~~Dvi-ll~pqi~~~-~~~i~~~ 70 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVK------IAAGS-YGAAGE---KLDDADVV-LLAPQVAYM-LPDLKKE 70 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEE------EEEec-HHHHHh---hcCCCCEE-EECchHHHH-HHHHHHH
Confidence 467776554432 2456667778898743 33322 122332 24678855 566655443 4444432
Q ss_pred C-CCCceEEEEchh
Q 022176 125 G-TPNVRIGVVGAG 137 (301)
Q Consensus 125 ~-~~~~~i~avG~~ 137 (301)
. ..++++..|.+.
T Consensus 71 ~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 71 TDKKGIPVEVINGA 84 (95)
T ss_pred hhhcCCCEEEeChh
Confidence 2 225677777664
No 442
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=36.62 E-value=1.7e+02 Score=21.56 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=19.6
Q ss_pred CEEEEEcCCcC------hhHHHHHHHhCCCee
Q 022176 179 CTVLYPASAKA------SNEIEEGLSNRGFEV 204 (301)
Q Consensus 179 ~~vLi~rg~~~------~~~L~~~L~~~G~~v 204 (301)
.+||+.||.+- ...+.+.|+++|.++
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~ 34 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPV 34 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeE
Confidence 37999999987 345557888889864
No 443
>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle. This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models.
Probab=36.62 E-value=53 Score=21.92 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=28.2
Q ss_pred CHHHHHHHHHcCCC----eeEecCCCCHHHHHHHHHHHH
Q 022176 261 GETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEAL 295 (301)
Q Consensus 261 G~~Ta~al~~~G~~----~~~v~~~ps~e~ll~ai~~~~ 295 (301)
-+...+.++.+|++ .++.++.|+..+|++.+..++
T Consensus 13 ~~~~r~tl~~LgL~k~~~~v~~~dtp~irGMi~kV~~lV 51 (55)
T TIGR01308 13 PKKQRKTLKALGLRKIGRQVVLEDNPAIRGMVNKVKHLV 51 (55)
T ss_pred CHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHheE
Confidence 45677788888886 367799999999999988765
No 444
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=36.61 E-value=1.8e+02 Score=26.37 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=22.5
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCC--CcEEEe
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHR--IDCLEL 79 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G--~~v~~~ 79 (301)
+++||||-..... .+++.|++.| ++++.+
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~ 31 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGA 31 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEE
Confidence 4789999876555 7889999885 777765
No 445
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=36.58 E-value=93 Score=23.80 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=40.8
Q ss_pred EEEEE-ChHHHHHHHHhhhcccCCCceEEEE--CHHHHHHHHH-cCCCeeEecCCC-CHHHHHHHHHHHHHccC
Q 022176 231 VVAVA-SPSAVRSWVNLISDTEQWSNSVACI--GETTASAAKR-LGLKNVYYPTHP-GLEGWVDSILEALREHG 299 (301)
Q Consensus 231 ~I~ft-S~sav~~~~~~l~~~~~~~~~i~aI--G~~Ta~al~~-~G~~~~~v~~~p-s~e~ll~ai~~~~~~~~ 299 (301)
+|+|| |..+++.+.+.-+ .++++++ .+.+++.|.- .|+.+.+..+.. +.+.+++...+++.+++
T Consensus 20 Ivv~T~sG~ta~~isk~RP-----~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~~g 88 (117)
T PF02887_consen 20 IVVFTESGRTARLISKYRP-----KVPIIAVTPNESVARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKERG 88 (117)
T ss_dssp EEEE-SSSHHHHHHHHT-T-----SSEEEEEESSHHHHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCchHHHHHHhhCC-----CCeEEEEcCcHHHHhhhhcccceEEEEeccccccHHHHHHHHHHHHHHcC
Confidence 34454 3445555544432 4556555 6677777774 377776666666 89999999998887765
No 446
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=36.52 E-value=2.3e+02 Score=28.32 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=50.1
Q ss_pred eeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEE
Q 022176 155 VAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVV 232 (301)
Q Consensus 155 ~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I 232 (301)
+.+++.+..-..|.+.+.+.. ...-|+|+--+.+.+.|++.|.+.|+++..+. --..++.-+..+..+ +..|++
T Consensus 496 v~m~~ed~k~kkL~eil~~~~-~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlH---g~k~qeQRe~aL~~fr~~t~dIl 571 (673)
T KOG0333|consen 496 VEMVSEDEKRKKLIEILESNF-DPPIIIFVNTKKGADALAKILEKAGYKVTTLH---GGKSQEQRENALADFREGTGDIL 571 (673)
T ss_pred EEEecchHHHHHHHHHHHhCC-CCCEEEEEechhhHHHHHHHHhhccceEEEee---CCccHHHHHHHHHHHHhcCCCEE
Confidence 456666555677877776653 33467788888999999999999997653332 111111112233333 578888
Q ss_pred EEECh
Q 022176 233 AVASP 237 (301)
Q Consensus 233 ~ftS~ 237 (301)
+-|-.
T Consensus 572 VaTDv 576 (673)
T KOG0333|consen 572 VATDV 576 (673)
T ss_pred EEecc
Confidence 88864
No 447
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=36.50 E-value=2e+02 Score=26.24 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=44.1
Q ss_pred CCCCEEEEEChHH---------HHHHHHhhhcccC--CCceEEEECHHHHHHHHHcCCCee----EecCCCCHHHHHHHH
Q 022176 227 LSIPVVAVASPSA---------VRSWVNLISDTEQ--WSNSVACIGETTASAAKRLGLKNV----YYPTHPGLEGWVDSI 291 (301)
Q Consensus 227 ~~~d~I~ftS~sa---------v~~~~~~l~~~~~--~~~~i~aIG~~Ta~al~~~G~~~~----~v~~~ps~e~ll~ai 291 (301)
+...+|++||-.+ ++.....+..... ..+.+++||.+..+.+...|.+.. -..+.|+.+.+.+..
T Consensus 71 kr~~~IviTSDrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~p~~~~~~~i~ 150 (287)
T COG0224 71 KRVLYIVITSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNPSFEEAIQIA 150 (287)
T ss_pred CceEEEEEecCcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccCCCHHHHHHHH
Confidence 3466778877544 3333333333221 246899999999999999888642 246778888776655
Q ss_pred HHH
Q 022176 292 LEA 294 (301)
Q Consensus 292 ~~~ 294 (301)
...
T Consensus 151 ~~~ 153 (287)
T COG0224 151 DKI 153 (287)
T ss_pred HHH
Confidence 443
No 448
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=36.49 E-value=1.6e+02 Score=28.47 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=39.5
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEece-----e---E--eeeC--CCchHHHHHHhcCCCccEEEEeC
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----I---Q--HAQG--PDTDRLSSVLNADTIFDWIIITS 110 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~-----~---~--~~~~--~d~~~l~~~l~~l~~~d~IiftS 110 (301)
.|+||++-...+...++..|++.|.++..+|. . . .... .|.+.+.+.++ -.+.|+||..+
T Consensus 2 ~~kVLvlG~G~re~al~~~l~~~g~~v~~~~~~~Npg~~~~a~~~~~~~~~d~e~l~~~~~-~~~id~Vi~~~ 73 (435)
T PRK06395 2 TMKVMLVGSGGREDAIARAIKRSGAILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDFAL-KNNVDIVFVGP 73 (435)
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCeEEEEECCCChhhhhcccceeecCCCCHHHHHHHHH-HhCCCEEEECC
Confidence 37899998887788999999999987777654 1 1 0111 23445555542 35688888664
No 449
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=36.46 E-value=2.2e+02 Score=26.99 Aligned_cols=122 Identities=4% Similarity=-0.076 Sum_probs=63.9
Q ss_pred HHHHHHHhccCCC--CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH--
Q 022176 164 GKILASELPKNGK--KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-- 239 (301)
Q Consensus 164 ~e~L~~~l~~~~~--~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sa-- 239 (301)
-+.|++.+..... .+-++.++.....++.+.+..++.|..- .+...-.. ..+++.+.+...|+.+++|-..
T Consensus 237 ~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~-~V~~~G~~----~~~el~~~l~~aDv~v~pS~~~~~ 311 (406)
T PRK15427 237 LHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLED-VVEMPGFK----PSHEVKAMLDDADVFLLPSVTGAD 311 (406)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCC-eEEEeCCC----CHHHHHHHHHhCCEEEECCccCCC
Confidence 3445565543221 2345666665555667777777776431 12221111 1123444456789999998532
Q ss_pred -----H-HHHHHhhhcccCCCceEEEECH-HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHH
Q 022176 240 -----V-RSWVNLISDTEQWSNSVACIGE-TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 240 -----v-~~~~~~l~~~~~~~~~i~aIG~-~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
+ ..+++.+. .++++++..- ...+.+++ |..-.++ +..+.++|.++|.+.++
T Consensus 312 g~~Eg~p~~llEAma----~G~PVI~t~~~g~~E~v~~-~~~G~lv-~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 312 GDMEGIPVALMEAMA----VGIPVVSTLHSGIPELVEA-DKSGWLV-PENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCccCccHHHHHHHh----CCCCEEEeCCCCchhhhcC-CCceEEe-CCCCHHHHHHHHHHHHh
Confidence 1 22333332 2566665422 23334433 3332233 44689999999998876
No 450
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=36.38 E-value=2.5e+02 Score=26.78 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEE-EeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEch-----
Q 022176 63 GKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA----- 136 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~-~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~----- 136 (301)
.++...|++.|+++. .+|-..+...+ .......++..++.+. ...+.+++.. +++.+..+-
T Consensus 168 ~elk~lL~~~Gi~v~~~lpd~~~~e~~----------~~~~~~~~~~~~~~~~-~~A~~Le~~~--GiP~~~~~~PiGi~ 234 (407)
T TIGR01279 168 DQLRLELKQLGIPVVGFLPASHFTELP----------VIGPGTVVAPLQPYLS-DTATTLRRER--GAKVLSAPFPFGPD 234 (407)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCcchhh----------hcCCCeEEEEechHHH-HHHHHHHHHh--CCccccCCCCcCHH
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHHH--HHHHhccCCC--CCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKI--LASELPKNGK--KKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~--L~~~l~~~~~--~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
.|.+.|++. .-....-|+....+. +...+..... .|+|+++..+..-.-.+...|.+.|.++..+
T Consensus 235 ~T~~~l~~l------a~~~g~~~~~~~~e~~~~~~~l~~~~~~l~Gkrv~i~gd~~~~~~l~~~L~elGm~~v~~ 303 (407)
T TIGR01279 235 GTRRFLEAI------AAEFGIEVDKLSEREAQAWRALEPHTQLLRGKKIFFFGDNLLELPLARFLKRCGMEVVEC 303 (407)
T ss_pred HHHHHHHHH------HHHhCcCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHCCCEEEEe
No 451
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.34 E-value=3.4e+02 Score=24.76 Aligned_cols=150 Identities=14% Similarity=0.098 Sum_probs=79.4
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc---CCCccEEEEeChHH--HH--HHHHHHHHcCCCCceEEEEch
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPEA--GS--VFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~---l~~~d~IiftS~~a--v~--~f~~~l~~~~~~~~~i~avG~ 136 (301)
.-.+.+++.|+++..+-+-+. ...+++.+.+.. ....|.|++--|-- .+ ..++.+.. ..-+=.+.+
T Consensus 53 ~k~k~~~~~Gi~~~~~~l~~~---~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p----~KDVDGl~~ 125 (284)
T PRK14177 53 MKVKACHKVGMGSEMIRLKEQ---TTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIAL----EKDVDGVTT 125 (284)
T ss_pred HHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc----ccccccCCh
Confidence 345677788988775443221 122344444433 46789999887732 21 12222211 111112222
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEE-EcCCcChhHHHHHHHhCCCeeEEEeeeeee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLY-PASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi-~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.-...|- . |-. .+.|- |+.+.++.|.... ..|+++++ =|+..-...|...|.++|+.|+.+.-..
T Consensus 126 ~n~g~l~-~------g~~-~~~Pc--Tp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T-- 193 (284)
T PRK14177 126 LSFGKLS-M------GVE-TYLPC--TPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT-- 193 (284)
T ss_pred hhHHHHH-c------CCC-CCCCC--CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--
Confidence 2211221 1 322 24443 6788877776543 26778655 5666667889999999999886554321
Q ss_pred eCCCCcHHHHHHcCCCCEEEEEChH
Q 022176 214 PVHHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
. . +.+...+.|+|+-.-+.
T Consensus 194 --~-~---l~~~~~~ADIvIsAvGk 212 (284)
T PRK14177 194 --Q-N---LPSIVRQADIIVGAVGK 212 (284)
T ss_pred --C-C---HHHHHhhCCEEEEeCCC
Confidence 1 1 11223567877755443
No 452
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=36.28 E-value=1e+02 Score=27.72 Aligned_cols=59 Identities=8% Similarity=0.188 Sum_probs=33.9
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHH---HHHHc--CCCCEEEEEChHHHHHHHHhhhc
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT---VLKQA--LSIPVVAVASPSAVRSWVNLISD 249 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~---~~~~~--~~~d~I~ftS~sav~~~~~~l~~ 249 (301)
..-+.+.|++.|... +-..|+....+.+.+. +.+.+ .++|.|+-+...++..+.+....
T Consensus 17 ~~gf~~~L~~~g~~~-~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa~~~~~~~~~ 80 (294)
T PF04392_consen 17 VRGFKDGLKELGYDE-KNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAAQALAKHLKD 80 (294)
T ss_dssp HHHHHHHHHHTT--C-CCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHcCCcc-ccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHhcCC
Confidence 456788899999776 2233433333444432 23333 58999998888888888877654
No 453
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=36.20 E-value=4.3e+02 Score=25.99 Aligned_cols=186 Identities=9% Similarity=0.056 Sum_probs=88.5
Q ss_pred HhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceee----cCCCCcHHHHHHHhc
Q 022176 97 LNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF----SPSKATGKILASELP 172 (301)
Q Consensus 97 l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~----~p~~~~~e~L~~~l~ 172 (301)
+.....+|.||..|....+.+.+.+...+....++.++...+...+.... .........+ .+.+ ..+.|++++.
T Consensus 265 ~~~~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~-~~r~~~~il~vGrl~~~K-g~~~li~A~~ 342 (500)
T TIGR02918 265 FSNADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPE-QERKPFSIITASRLAKEK-HIDWLVKAVV 342 (500)
T ss_pred HhchhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcc-cccCCeEEEEEecccccc-CHHHHHHHHH
Confidence 44567789999999887777666555443333455555443322111000 0000111212 2333 3455666654
Q ss_pred cCC--CCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcc
Q 022176 173 KNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDT 250 (301)
Q Consensus 173 ~~~--~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~ 250 (301)
... ..+-++.+.++....+.|.+..++.|..- .+. +. ... ....+ ....|+.+++|-. +.|--.+-+.
T Consensus 343 ~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~-~V~-f~--G~~-~~~~~---~~~adv~v~pS~~--Egfgl~~lEA 412 (500)
T TIGR02918 343 KAKKSVPELTFDIYGEGGEKQKLQKIINENQAQD-YIH-LK--GHR-NLSEV---YKDYELYLSASTS--EGFGLTLMEA 412 (500)
T ss_pred HHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCC-eEE-Ec--CCC-CHHHH---HHhCCEEEEcCcc--ccccHHHHHH
Confidence 321 13456666655444566766666665421 111 11 111 11222 3578999999952 3331111111
Q ss_pred cCCCceEEEECH--HHHHHHHHcCCCeeEecC---CCC----HHHHHHHHHHHH
Q 022176 251 EQWSNSVACIGE--TTASAAKRLGLKNVYYPT---HPG----LEGWVDSILEAL 295 (301)
Q Consensus 251 ~~~~~~i~aIG~--~Ta~al~~~G~~~~~v~~---~ps----~e~ll~ai~~~~ 295 (301)
..-++++++--- ...+.++ .|..=.+++. ..+ .++|.++|.+.+
T Consensus 413 ma~G~PVI~~dv~~G~~eiI~-~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll 465 (500)
T TIGR02918 413 VGSGLGMIGFDVNYGNPTFIE-DNKNGYLIPIDEEEDDEDQIITALAEKIVEYF 465 (500)
T ss_pred HHhCCCEEEecCCCCCHHHcc-CCCCEEEEeCCccccchhHHHHHHHHHHHHHh
Confidence 112567776321 2344443 3544334442 123 677888877766
No 454
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=36.17 E-value=2.5e+02 Score=23.18 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=61.5
Q ss_pred EEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC-CCCCEEEEEcCCcCh-hHHHHHHHhC--CCeeEE
Q 022176 131 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG-KKKCTVLYPASAKAS-NEIEEGLSNR--GFEVVR 206 (301)
Q Consensus 131 i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~-~~~~~vLi~rg~~~~-~~L~~~L~~~--G~~v~~ 206 (301)
+++=|.....+++.. |.+ .+...++-+|...+.+.. .++.+|.++.+.... +.+.+.|++. |+++
T Consensus 7 ~~~DG~~l~~~~~~~------~~~---~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i-- 75 (171)
T cd06533 7 VLPDGIGVVWAARLL------GGP---LPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKI-- 75 (171)
T ss_pred EecCcHHHHHHHHHc------CCC---CCcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEE--
Confidence 455677777777766 664 244556666666654332 246789888887653 4556667766 3333
Q ss_pred EeeeeeeeCCCCc-HHHHHHc--CCCCEEEE--EChHHHHHHHHhhhcccCCCceEEEECH
Q 022176 207 LNTYTTEPVHHVD-QTVLKQA--LSIPVVAV--ASPSAVRSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 207 ~~vY~~~~~~~~~-~~~~~~~--~~~d~I~f--tS~sav~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
.-|..-+-.... +.+++.+ .++|+|++ .+|..= .|....... .....++++|-
T Consensus 76 -~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~-l~~~v~~~vG~ 133 (171)
T cd06533 76 -VGYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQE-LWIARHKDR-LPVPVAIGVGG 133 (171)
T ss_pred -EEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHH-CCCCEEEEece
Confidence 222222222111 2233333 45665544 566664 344333322 12455677775
No 455
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=36.14 E-value=1.6e+02 Score=27.30 Aligned_cols=54 Identities=22% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-hhHHHHHHHhCCCeeEEE
Q 022176 152 SLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-SNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 152 G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~ 207 (301)
..++...|=+-..|.+..++.+.. ...||+++|..+ .+...+.|+..|+.|.++
T Consensus 52 NA~Vlttpwg~ynes~~~eI~~ln--pd~VLIIGGp~AVs~~yE~~Lks~GitV~Ri 106 (337)
T COG2247 52 NAPVLTTPWGIYNESVLDEIIELN--PDLVLIIGGPIAVSPNYENALKSLGITVKRI 106 (337)
T ss_pred CCeeEecCcccccHHHHHHHHhhC--CceEEEECCCCcCChhHHHHHHhCCcEEEEe
Confidence 334444452223455556665543 478999999887 577899999999877654
No 456
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=36.13 E-value=56 Score=26.75 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=25.3
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
.|++|++++|........+.|.+.|++|+.+
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 5789999998888877888888888887654
No 457
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=36.11 E-value=2e+02 Score=25.38 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=34.7
Q ss_pred EEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeC-CCchHHHHHHhcCCCccEEEEeC
Q 022176 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG-PDTDRLSSVLNADTIFDWIIITS 110 (301)
Q Consensus 53 IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~-~d~~~l~~~l~~l~~~d~IiftS 110 (301)
|+..+...+...+.+.|+++|+++..+..-+.... .+.. .++.++|.++.-+
T Consensus 3 ~~~~~~~~~~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~d~v~~r~ 55 (280)
T TIGR02144 3 ILYDIIRPDEKMLIEELEKLGLPYRKIYVPALPLPFGERP------KELEDVDVAIIRC 55 (280)
T ss_pred EEecCCCHHHHHHHHHHHHcCCceEEEEhhheEEEcCCCc------cccCCCCEEEEcC
Confidence 55666667788999999999999987755544321 1110 1346788888764
No 458
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=36.03 E-value=3.5e+02 Score=26.85 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=86.5
Q ss_pred CeEEEeCCCCchHHHHHHHHhC-CCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCCCC
Q 022176 51 PKVVVTRERGKNGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPN 128 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~-G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~-~f~~~l~~~~~~~ 128 (301)
|+|+++.+-. +...+.|++. |+++...+ ..+.+++ .+.+.++|.++..+...+. .+++ . .++
T Consensus 1 m~ili~~~~~--~~~~~~l~~~~~~~v~~~~------~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~l~---~--~~~ 64 (526)
T PRK13581 1 MKVLVSDPIS--PAGLEILKDAPGVEVDVKT------GLDKEEL---LEIIGDYDALIVRSATKVTAEVLE---A--AKN 64 (526)
T ss_pred CeEEEeCCCC--HHHHHHHhccCCeEEEeCC------CCCHHHH---HHHhcCCCEEEEcCCCCCCHHHHh---h--CCC
Confidence 4688887543 4455677765 55554322 1122333 3346789988765432222 1222 2 245
Q ss_pred ceEEE---Echhh--HHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------h-cc------------C--------C
Q 022176 129 VRIGV---VGAGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------L-PK------------N--------G 175 (301)
Q Consensus 129 ~~i~a---vG~~T--a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l-~~------------~--------~ 175 (301)
+|+++ +|-.. .+++.+. |+.+.-.|.. ++..+++. + .+ | .
T Consensus 65 Lk~I~~~~~G~d~id~~~~~~~------gI~V~n~p~~-~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~ 137 (526)
T PRK13581 65 LKVIGRAGVGVDNVDVPAATRR------GIIVVNAPTG-NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVE 137 (526)
T ss_pred CeEEEECCcccccccHHHHHHC------CCEEEeCCCC-ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccc
Confidence 66544 33321 2455666 8877665542 22222211 1 00 1 1
Q ss_pred CCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCC----CCcHHHHHHcCCCCEEEEEChHH
Q 022176 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH----HVDQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 176 ~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~----~~~~~~~~~~~~~d~I~ftS~sa 239 (301)
..++++.++.-......++..|+..|.+|..+..|...... .....+.+.+.+.|+|++.-|.+
T Consensus 138 l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t 205 (526)
T PRK13581 138 LYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLT 205 (526)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCC
Confidence 25778989888777888999999999876544433211000 00001122245778888877754
No 459
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=36.00 E-value=97 Score=28.52 Aligned_cols=61 Identities=8% Similarity=0.084 Sum_probs=40.5
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a 113 (301)
.|.+|++..|.- ..+...++..|++++.+|+-. ....|.+.+++.+. -.+...|++++++-
T Consensus 104 ~gd~vlv~~P~y--~~~~~~~~~~g~~~~~i~~~~-~~~~d~~~l~~~~~-~~~~~~v~l~~p~N 164 (356)
T PRK04870 104 PGATVLAPEPGF--VMYRMSAKLAGLEFVGVPLTA-DFTLDLPAMLAAIA-EHRPALVFLAYPNN 164 (356)
T ss_pred CCCEEEECCCCH--HHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHHHhh-cCCCCEEEEcCCCC
Confidence 467899988753 356667788999999998742 22234566666552 24677888876543
No 460
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=35.95 E-value=3.8e+02 Score=25.24 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHcc
Q 022176 282 PGLEGWVDSILEALREH 298 (301)
Q Consensus 282 ps~e~ll~ai~~~~~~~ 298 (301)
.+.++|.++|.+.++++
T Consensus 373 ~d~~~La~~l~~ll~~~ 389 (425)
T PRK05749 373 EDAEDLAKAVTYLLTDP 389 (425)
T ss_pred CCHHHHHHHHHHHhcCH
Confidence 36788998888877543
No 461
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=35.92 E-value=4.6e+02 Score=26.75 Aligned_cols=41 Identities=17% Similarity=0.342 Sum_probs=27.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeE
Q 022176 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVV 205 (301)
Q Consensus 164 ~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~ 205 (301)
.+.|...|.... ....++|++.......|.+.|.+.|+.+.
T Consensus 233 ~~~L~~~L~~~~-~~~~IVF~~tk~~a~~l~~~L~~~g~~~~ 273 (629)
T PRK11634 233 NEALVRFLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSA 273 (629)
T ss_pred HHHHHHHHHhcC-CCCEEEEeccHHHHHHHHHHHHhCCCCEE
Confidence 345555554332 34567778887778889999999887553
No 462
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=35.81 E-value=96 Score=27.53 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=33.8
Q ss_pred CCCEEEEEChHH-------HHHHHHhhhcccCCCceEEEECH----HHHHHHHHcCCCeeEecCCC
Q 022176 228 SIPVVAVASPSA-------VRSWVNLISDTEQWSNSVACIGE----TTASAAKRLGLKNVYYPTHP 282 (301)
Q Consensus 228 ~~d~I~ftS~sa-------v~~~~~~l~~~~~~~~~i~aIG~----~Ta~al~~~G~~~~~v~~~p 282 (301)
++|.+++.||+. +|-+++.. +++.++||. +..+++++.||--+++...|
T Consensus 60 ~pDf~i~isPN~a~PGP~~ARE~l~~~------~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~Dp 119 (277)
T PRK00994 60 KPDFVIVISPNPAAPGPKKAREILKAA------GIPCIVIGDAPGKKVKDAMEEQGLGYIIVKADP 119 (277)
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhc------CCCEEEEcCCCccchHHHHHhcCCcEEEEecCc
Confidence 789999999983 44443321 456666653 44578999999887776654
No 463
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=35.81 E-value=57 Score=24.32 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=24.2
Q ss_pred EECHHHHHHHHHcCCCeeEecCCCCHHHHHHHH
Q 022176 259 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 291 (301)
Q Consensus 259 aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai 291 (301)
.||+.....|++.|+++...+...+.+..++.+
T Consensus 69 ~iG~~a~~~L~~~GI~v~~~~~~~~v~eal~~~ 101 (102)
T cd00853 69 AIGGPAAARLVRAGIHPIKVPEGEPIAELLEEL 101 (102)
T ss_pred hcChhHHHHHHHcCCEEEEcCCCCcHHHHHHhh
Confidence 589999999999999985544434566655543
No 464
>PRK00170 azoreductase; Reviewed
Probab=35.77 E-value=67 Score=26.94 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=11.6
Q ss_pred HHHhcCCCccEEEEeCh
Q 022176 95 SVLNADTIFDWIIITSP 111 (301)
Q Consensus 95 ~~l~~l~~~d~IiftS~ 111 (301)
+..+++...|.|||.||
T Consensus 79 ~l~~~i~~AD~iV~~sP 95 (201)
T PRK00170 79 ELLEEFLAADKIVIAAP 95 (201)
T ss_pred HHHHHHHHCCEEEEeec
Confidence 33445667788888887
No 465
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=35.74 E-value=2.7e+02 Score=25.54 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=10.4
Q ss_pred EEeChHHHHHHHHHHHHcCC
Q 022176 107 IITSPEAGSVFLEAWKEAGT 126 (301)
Q Consensus 107 iftS~~av~~f~~~l~~~~~ 126 (301)
++.+...+..+++.+.+.++
T Consensus 200 l~~~~~~~~~il~~a~~~g~ 219 (362)
T cd06367 200 LYCSKEEAERIFEAAASLGL 219 (362)
T ss_pred EeCCHHHHHHHHHHHHHcCC
Confidence 33444455555555555554
No 466
>PRK05723 flavodoxin; Provisional
Probab=35.74 E-value=1.9e+02 Score=23.41 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=33.2
Q ss_pred hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCcc-EEEEeCh-------HHHHHHHHHHHHc---CCCCce
Q 022176 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFD-WIIITSP-------EAGSVFLEAWKEA---GTPNVR 130 (301)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d-~IiftS~-------~av~~f~~~l~~~---~~~~~~ 130 (301)
+..+++.|.+.|+++...+.... ..+. ... +| .|++||. .....|.+.+.+. .+.+++
T Consensus 18 A~~la~~l~~~g~~~~~~~~~~~------~~~~----~~~-~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~~~l~~~~ 86 (151)
T PRK05723 18 ARHAESLLKAAGFEAWHNPRASL------QDLQ----AFA-PEALLAVTSTTGMGELPDNLMPLYSAIRDQLPAAWRGLP 86 (151)
T ss_pred HHHHHHHHHHCCCceeecCcCCH------hHHH----hCC-CCeEEEEECCCCCCCCchhHHHHHHHHHhcCccCCCCCE
Confidence 35566666777888865443211 1111 221 23 4556664 3345577767653 345666
Q ss_pred EEEEch
Q 022176 131 IGVVGA 136 (301)
Q Consensus 131 i~avG~ 136 (301)
+++.|-
T Consensus 87 ~aVfGL 92 (151)
T PRK05723 87 GAVIAL 92 (151)
T ss_pred EEEEeE
Confidence 655543
No 467
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=35.70 E-value=3.1e+02 Score=24.92 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=6.1
Q ss_pred HHHHhCCCeeEEEe
Q 022176 195 EGLSNRGFEVVRLN 208 (301)
Q Consensus 195 ~~L~~~G~~v~~~~ 208 (301)
..++..|+++..++
T Consensus 91 ~~~~~~g~~~~~v~ 104 (356)
T cd06451 91 DMAERYGADVDVVE 104 (356)
T ss_pred HHHHHhCCCeEEee
Confidence 33444444444444
No 468
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=35.70 E-value=96 Score=25.50 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=33.1
Q ss_pred HHHHHhccCCCCCCEEEEEc-CCcChhHHHHHHHhCCCeeEEEeeeee
Q 022176 166 ILASELPKNGKKKCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 166 ~L~~~l~~~~~~~~~vLi~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.+++.+.+....++++++.- +..+...+.+.|++.|+++..+.-|+.
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeec
Confidence 34444444445667776654 444477889999999999998888875
No 469
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=35.50 E-value=3.4e+02 Score=24.92 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCCCeEEEeCCC-----CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe-ChHHHHHHHHHH
Q 022176 48 NSNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-SPEAGSVFLEAW 121 (301)
Q Consensus 48 l~g~~IlitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift-S~~av~~f~~~l 121 (301)
...++|.+.... .....+.+.+++.|++++....+... ..|.......+ ...+.|.|++. .......|++++
T Consensus 138 ~~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-~~D~~~~v~~i-~~~~pd~V~~~~~~~~~~~~~~~~ 215 (351)
T cd06334 138 LKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPG-PNDQKAQWLQI-RRSGPDYVILWGWGVMNPVAIKEA 215 (351)
T ss_pred CCCCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCC-cccHHHHHHHH-HHcCCCEEEEecccchHHHHHHHH
Q ss_pred HHcCCCCceEEEEchhhHHHHHHHhhcccCC
Q 022176 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCS 152 (301)
Q Consensus 122 ~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G 152 (301)
.+.+++..-+..-+-.....++.. |
T Consensus 216 ~~~G~~~~~~~~~~~~~~~~~~~~------g 240 (351)
T cd06334 216 KRVGLDDKFIGNWWSGDEEDVKPA------G 240 (351)
T ss_pred HHcCCCceEEEeeccCcHHHHHHh------h
No 470
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=35.27 E-value=1.9e+02 Score=25.49 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=46.8
Q ss_pred CCCCEEEEEChHHH-----HHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHccC
Q 022176 227 LSIPVVAVASPSAV-----RSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 299 (301)
Q Consensus 227 ~~~d~I~ftS~sav-----~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~ 299 (301)
..+|+|+|...++- +.+.+.+... ...+++..-.....++|+.+|.+.+.+... =.+++-+.+.+|+.++|
T Consensus 70 a~~dvi~~~cTsgs~~~G~~~~~~~i~~~-~~g~p~tt~~~A~~~AL~alg~~RIalvTP-Y~~~v~~~~~~~l~~~G 145 (239)
T TIGR02990 70 EELDVVAYSCTSASVVIGDDEVTRAINAA-KPGTPVVTPSSAAVDGLAALGVRRISLLTP-YTPETSRPMAQYFAVRG 145 (239)
T ss_pred CCCCEEEEccchhheecCHHHHHHHHHhc-CCCCCeeCHHHHHHHHHHHcCCCEEEEECC-CcHHHHHHHHHHHHhCC
Confidence 37888887654442 3444444321 124677777778888899999988765553 36777788888887766
No 471
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.16 E-value=2.1e+02 Score=24.96 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=12.5
Q ss_pred CEEEEEcCC---cChhHHHHHHHhCCCee
Q 022176 179 CTVLYPASA---KASNEIEEGLSNRGFEV 204 (301)
Q Consensus 179 ~~vLi~rg~---~~~~~L~~~L~~~G~~v 204 (301)
+.+++..+. +-...+.+.|.+.|++|
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v 36 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKL 36 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEE
Confidence 444444432 33445555555555544
No 472
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=35.16 E-value=1.9e+02 Score=24.60 Aligned_cols=74 Identities=16% Similarity=0.017 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEchh
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG~~ 137 (301)
-+.+.++++|+++............+ ...+.+.+..-...|.|+.+|......+...+.+.+. +++.+++++..
T Consensus 136 gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~al~~~g~~~p~~v~v~g~d~~ 214 (267)
T cd06284 136 GYRQALAEAGLPADEELIQEGDFSLESGYAAARRLLALPDRPTAIFCFSDEMAIGAISALKELGLRVPEDISVVGFDDI 214 (267)
T ss_pred HHHHHHHHcCCCCCcceEEeCCCChHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCccceeEEEeCCH
Confidence 44456677775433222211111111 1233344433345788888777666667777777664 35566666543
No 473
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=35.11 E-value=1.3e+02 Score=25.11 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred CEEEEEcCCcChh--------HHHHHHHhCCCeeEEE-----eeeeee----eCCCCcHHHHHHcCCCCEEEEEChH---
Q 022176 179 CTVLYPASAKASN--------EIEEGLSNRGFEVVRL-----NTYTTE----PVHHVDQTVLKQALSIPVVAVASPS--- 238 (301)
Q Consensus 179 ~~vLi~rg~~~~~--------~L~~~L~~~G~~v~~~-----~vY~~~----~~~~~~~~~~~~~~~~d~I~ftS~s--- 238 (301)
.||+++.|..... .+.+.|...+...... +.|.-. ..+.....+.+.+...|+++|.||.
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeYn~ 80 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEYNG 80 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCccCC
Q ss_pred ----HHHHHHHhhhcccCCCceEEEEC
Q 022176 239 ----AVRSWVNLISDTEQWSNSVACIG 261 (301)
Q Consensus 239 ----av~~~~~~l~~~~~~~~~i~aIG 261 (301)
.+++.++++......+.++..++
T Consensus 81 s~pg~lKnaiD~l~~~~~~~Kpv~~~~ 107 (184)
T COG0431 81 SYPGALKNAIDWLSREALGGKPVLLLG 107 (184)
T ss_pred CCCHHHHHHHHhCCHhHhCCCcEEEEe
No 474
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=35.09 E-value=2.7e+02 Score=27.20 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=57.1
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~ 125 (301)
.-|.|+++++.-...+...+...|++.|.+++..-. .... .+.....++.+.. +.+++..++-.+ +.+.+.+.
T Consensus 331 ~~L~GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~---~~~~-~~~~~~~~~~~~~-~~~i~~~~d~~e-l~~~i~~~- 403 (466)
T TIGR01282 331 PRLEGKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGY---EFAH-NDDYERTTKYMKD-GTLIYDDVTHYE-FEEFVEKL- 403 (466)
T ss_pred HhcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEee---ecCC-HHHHHHHHHhcCC-CeEEeeCCCHHH-HHHHHHHh-
Confidence 468899999887666788888999999999973222 2111 1233344434433 667666555444 33444442
Q ss_pred CCCceEEEEchhhHHHHHHHhhcccCCCcee
Q 022176 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (301)
Q Consensus 126 ~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~ 156 (301)
+.-++.-|..-.-..++. |+..+
T Consensus 404 --~pDl~ig~~~~~~~a~k~------gIP~~ 426 (466)
T TIGR01282 404 --KPDLVGSGIKEKYVFQKM------GVPFR 426 (466)
T ss_pred --CCCEEEecCCccceeeec------CCCcc
Confidence 344555555555555555 77653
No 475
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=35.08 E-value=3.2e+02 Score=24.20 Aligned_cols=116 Identities=16% Similarity=0.081 Sum_probs=67.0
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHH
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~ 144 (301)
....+++.|.+..+.|+- +.+ .+...+.+.++. .++..+-+|-|.=...+ +++.+.. ...+.
T Consensus 19 hn~~~~~~g~~~~y~~~~-v~~-~~l~~~~~~~~~-~~~~G~nVT~P~K~~~~-~~~d~~~--------------~~A~~ 80 (270)
T TIGR00507 19 HNAFFKQLGLEGPYIAFL-VPP-DDLEDALSGFFA-LGFKGANVTSPFKEEAF-QFLDEID--------------ERAKL 80 (270)
T ss_pred HHHHHHHcCCCcEEEEEe-cCH-HHHHHHHHHHHh-cCCCEEEECcCCHHHHH-HHhhhCC--------------HHHHH
Confidence 345778899998888763 222 122222233323 36899999999887753 4443321 11111
Q ss_pred HhhcccCCC-cee------ecCCCCcHHHHHHHhccCC--CCCCEEEEEcCCcChhHHHHHHHhCCCee
Q 022176 145 VIQSSKCSL-DVA------FSPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (301)
Q Consensus 145 ~~~~~~~G~-~~~------~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~~~~~L~~~L~~~G~~v 204 (301)
. |- +.. +....-+..+++..|.+.. ..+++++++++.+....+...|.+.|.+|
T Consensus 81 ~------gavNti~~~~g~l~g~NTD~~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v 143 (270)
T TIGR00507 81 A------GAVNTLKLEDGKLVGYNTDGIGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLKADCNV 143 (270)
T ss_pred h------CCceEEEeeCCEEEEEcCCHHHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEE
Confidence 1 11 111 1122345677777775421 24678888888777778888888888644
No 476
>PRK04017 hypothetical protein; Provisional
Probab=35.04 E-value=2.4e+02 Score=22.61 Aligned_cols=81 Identities=15% Similarity=0.186 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCC-CCcHHHHHHHhccCCCCCCEEE-EEcCCcChh-
Q 022176 115 SVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVL-YPASAKASN- 191 (301)
Q Consensus 115 ~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~-~~~~e~L~~~l~~~~~~~~~vL-i~rg~~~~~- 191 (301)
..+++.|.+....+..|++=|+.=.++|+++ |+..++... ...-..+.+.+.. ..+.|+ +.-.+...+
T Consensus 10 ~e~i~~L~e~s~~g~vIVVEGk~D~~~L~~l------Gv~~~iI~t~g~~~~~~~e~ia~---~~r~VIILTD~D~~Gek 80 (132)
T PRK04017 10 EEIIEELKEFSEAGAPIIVEGKRDVESLRKL------GVEGEIIKVSRTPLAEIAELIAS---RGKEVIILTDFDRKGEE 80 (132)
T ss_pred HHHHHHHHHhcCCCCEEEEeCccHHHHHHHc------CCCccEEEECCeecchHHHHHHh---cCCeEEEEECCCcchHH
Confidence 3345556555556788999999989999999 886554322 2111222233322 234444 454454444
Q ss_pred ---HHHHHHHhCCCee
Q 022176 192 ---EIEEGLSNRGFEV 204 (301)
Q Consensus 192 ---~L~~~L~~~G~~v 204 (301)
.+.+.|...|+.|
T Consensus 81 Ir~~l~~~l~~~G~~v 96 (132)
T PRK04017 81 LAKKLSEYLQGYGIKV 96 (132)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 4566666677654
No 477
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=35.01 E-value=2.1e+02 Score=28.76 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEee
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (301)
..++|+++.|......|....++.|++|..+..
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~ 53 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQMGIKVKVLDP 53 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 457899999998888999999999988765544
No 478
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=34.98 E-value=41 Score=26.79 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=42.1
Q ss_pred EEchhhHHHHHHHhhcccCC--CceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCC
Q 022176 133 VVGAGTASIFEEVIQSSKCS--LDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGF 202 (301)
Q Consensus 133 avG~~Ta~~L~~~~~~~~~G--~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~ 202 (301)
.||..|-+.++++ . +++.-.....+.+.|.+.+.++. -+.+++..+...+.|.+.|...+.
T Consensus 9 SIG~qtLdVi~~~------~d~f~v~~Lsa~~n~~~L~~q~~~f~---p~~v~i~~~~~~~~l~~~~~~~~~ 71 (129)
T PF02670_consen 9 SIGTQTLDVIRKH------PDKFEVVALSAGSNIEKLAEQAREFK---PKYVVIADEEAYEELKKALPSKGP 71 (129)
T ss_dssp HHHHHHHHHHHHC------TTTEEEEEEEESSTHHHHHHHHHHHT----SEEEESSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhC------CCceEEEEEEcCCCHHHHHHHHHHhC---CCEEEEcCHHHHHHHHHHhhhcCC
Confidence 3788899999888 5 55544444667888877777663 356777777777778888865554
No 479
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=34.73 E-value=1.2e+02 Score=26.90 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=18.5
Q ss_pred CccEEEEeChHHHHHHHHHHHHcCCCCceEEEEch
Q 022176 102 IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 102 ~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~ 136 (301)
..+.|+.++-..+..+++.+.+.+..++.++..+.
T Consensus 207 ~~~ai~~~~d~~A~g~l~al~~~G~~dv~vig~d~ 241 (295)
T PRK10653 207 DVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDG 241 (295)
T ss_pred CcCEEEECCChhHHHHHHHHHHcCCCceEEEEeCC
Confidence 35566555555555555555555554455554443
No 480
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=34.72 E-value=91 Score=28.52 Aligned_cols=83 Identities=10% Similarity=0.210 Sum_probs=41.3
Q ss_pred eEEEEchhhHHHHHHHhhc---ccCCCceeecCCC----CcHHHHHHHhccCCCC-----CCEEEEEcCCcChhH-----
Q 022176 130 RIGVVGAGTASIFEEVIQS---SKCSLDVAFSPSK----ATGKILASELPKNGKK-----KCTVLYPASAKASNE----- 192 (301)
Q Consensus 130 ~i~avG~~Ta~~L~~~~~~---~~~G~~~~~~p~~----~~~e~L~~~l~~~~~~-----~~~vLi~rg~~~~~~----- 192 (301)
+|++|-..|+.++++.+.. ....+++.+.|.. ...+.+++.|...... -.-|++.||.++.++
T Consensus 16 ~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN 95 (319)
T PF02601_consen 16 RIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFN 95 (319)
T ss_pred EEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccC
Confidence 4444444454444443221 2223444444543 2345566666543221 246888999987544
Q ss_pred ---HHHHHHhCCCeeEEEeeeeeeeCCC
Q 022176 193 ---IEEGLSNRGFEVVRLNTYTTEPVHH 217 (301)
Q Consensus 193 ---L~~~L~~~G~~v~~~~vY~~~~~~~ 217 (301)
++..+-+.. +|+..-+..+.
T Consensus 96 ~e~varai~~~~-----~PvisaIGHe~ 118 (319)
T PF02601_consen 96 DEEVARAIAASP-----IPVISAIGHET 118 (319)
T ss_pred hHHHHHHHHhCC-----CCEEEecCCCC
Confidence 444554443 45555554443
No 481
>PRK09267 flavodoxin FldA; Validated
Probab=34.71 E-value=99 Score=25.22 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=24.1
Q ss_pred cCCCccEEEEeChHH--------HHHHHHHHHHcCCCCceEEEEc
Q 022176 99 ADTIFDWIIITSPEA--------GSVFLEAWKEAGTPNVRIGVVG 135 (301)
Q Consensus 99 ~l~~~d~IiftS~~a--------v~~f~~~l~~~~~~~~~i~avG 135 (301)
++..||.|||-||.= +..|++.+....+.+.+++++|
T Consensus 43 ~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg 87 (169)
T PRK09267 43 DFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG 87 (169)
T ss_pred hHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 346799999987653 3445555544445677888877
No 482
>PLN02306 hydroxypyruvate reductase
Probab=34.69 E-value=4.1e+02 Score=25.28 Aligned_cols=148 Identities=13% Similarity=0.059 Sum_probs=77.6
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC-CCccEEEEeChHHH-HHHHHHHHHc
Q 022176 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAG-SVFLEAWKEA 124 (301)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l-~~~d~IiftS~~av-~~f~~~l~~~ 124 (301)
|--+++|+++.+-.. +...+.|++.|+++.... ......+.+++.+ .+ .++|.++..+...+ +.+++.+.+.
T Consensus 12 ~~~~~~v~~~~~~~~-~~~~~~L~~~~~~v~~~~--~~~~~~~~~~~~~---~~~~~~d~vi~~~~~~i~~~~l~~~~~l 85 (386)
T PLN02306 12 PNGKYRVVSTKPMPG-TRWINLLVDQDCRVEICT--EKKTILSVEDIIA---LIGDKCDGVIGQLTEDWGETLFSALSKA 85 (386)
T ss_pred CCCCceEEEeCCCCc-HHHHHHHHhcCceEEecC--CcCCCCCHHHHHH---HhhcCCcEEEEcCCCCcCHHHHHhCCcC
Confidence 444567888887542 224567877777775222 0011112233333 33 46888776543222 2334333211
Q ss_pred CCCCceEEE-Echhh----HHHHHHHhhcccCCCceeecCCCCcHHHHHHH------------------hc-----cC--
Q 022176 125 GTPNVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE------------------LP-----KN-- 174 (301)
Q Consensus 125 ~~~~~~i~a-vG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~------------------l~-----~~-- 174 (301)
+.++++ .|.++ .+++++. |+.+.-.|. .+++.+++. +. .+
T Consensus 86 ---~lk~I~~~~~G~D~iD~~aa~~~------gI~V~n~pg-~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~ 155 (386)
T PLN02306 86 ---GGKAFSNMAVGYNNVDVEAANKY------GIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLP 155 (386)
T ss_pred ---CceEEEECCcccccccHHHHHHC------CCEEEECCC-cCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccc
Confidence 234433 33332 3666777 988866654 233332211 10 00
Q ss_pred ------CCCCCEEEEEcCCcChhHHHHHHH-hCCCeeEEEeee
Q 022176 175 ------GKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTY 210 (301)
Q Consensus 175 ------~~~~~~vLi~rg~~~~~~L~~~L~-~~G~~v~~~~vY 210 (301)
...|+++.++.-......+++.|. ..|.+|..+..|
T Consensus 156 ~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~ 198 (386)
T PLN02306 156 HLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY 198 (386)
T ss_pred cccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCC
Confidence 125678888888877888888885 788877555443
No 483
>PLN02762 pyruvate kinase complex alpha subunit
Probab=34.66 E-value=1.5e+02 Score=29.44 Aligned_cols=64 Identities=8% Similarity=0.066 Sum_probs=45.9
Q ss_pred EEEEE-ChHHHHHHHHhhhcccCCCceEEEE--CHHHHHHHHH-cCCCeeEecCCCCHHHHHHHHHHHHHccC
Q 022176 231 VVAVA-SPSAVRSWVNLISDTEQWSNSVACI--GETTASAAKR-LGLKNVYYPTHPGLEGWVDSILEALREHG 299 (301)
Q Consensus 231 ~I~ft-S~sav~~~~~~l~~~~~~~~~i~aI--G~~Ta~al~~-~G~~~~~v~~~ps~e~ll~ai~~~~~~~~ 299 (301)
+|+|| |..+++.+.++-+ .++++++ .+.+++.|.- .|+.+.......+.+.+++...+++++++
T Consensus 413 Iv~~T~sG~tA~~iSk~RP-----~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g 480 (509)
T PLN02762 413 IFVYTKHGHMASLLSRNRP-----DCPIFAFTDTTSVRRRLNLQWGLIPFRLDFSDDMESNLNKTFSLLKARG 480 (509)
T ss_pred EEEECCCcHHHHHHHhhCC-----CCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 66777 6677777765533 4556655 6678777765 48888766667788999999998887665
No 484
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=34.47 E-value=46 Score=26.04 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=36.1
Q ss_pred hHHHHHHHHhCCCcEEEeceeEe----eeCCCchHH-HHHHhcC--CCccEEEEeChHHH-HHHHHHHHHcCCCCceEEE
Q 022176 62 NGKLIKALAKHRIDCLELPLIQH----AQGPDTDRL-SSVLNAD--TIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGV 133 (301)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~----~~~~d~~~l-~~~l~~l--~~~d~IiftS~~av-~~f~~~l~~~~~~~~~i~a 133 (301)
...+...|++.|+.+...|.... +...|. .| .+.+... ..+|.+++.|.-+= ...++.+.+ .+.++.+
T Consensus 49 ~~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~-~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~---~g~~V~v 124 (146)
T PF01936_consen 49 QKSFQEALQRAGIKVRHFPLRKRGGGGKKGVDV-ALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRE---RGKRVIV 124 (146)
T ss_dssp HHHHHHHHHHHT-EEEE------S---S---HH-HHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHH---H--EEEE
T ss_pred hhhHHHHHHhCeeeEEeeecccccccccCCcHH-HHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHH---cCCEEEE
Confidence 46777899999998888888653 211221 12 1222122 44688888887732 222333433 3556666
Q ss_pred Ec--hhhHHHHHHH
Q 022176 134 VG--AGTASIFEEV 145 (301)
Q Consensus 134 vG--~~Ta~~L~~~ 145 (301)
+| ..+.+.|++.
T Consensus 125 ~~~~~~~s~~L~~~ 138 (146)
T PF01936_consen 125 VGAEDSASEALRSA 138 (146)
T ss_dssp EE-GGGS-HHHHHH
T ss_pred EEeCCCCCHHHHHh
Confidence 65 5677777776
No 485
>PRK07856 short chain dehydrogenase; Provisional
Probab=34.28 E-value=2.1e+02 Score=24.63 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=26.4
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.++.|+++|||-... =+..+++.|.+.|++++.+
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~ 36 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVC 36 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 356789999998764 4578999999999987543
No 486
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.22 E-value=2.2e+02 Score=24.50 Aligned_cols=70 Identities=10% Similarity=0.002 Sum_probs=42.0
Q ss_pred CCCCCCeEEEeCCC-CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEE--EEeChHHHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWI--IITSPEAGSVFLEAWK 122 (301)
Q Consensus 46 ~~l~g~~IlitR~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~I--iftS~~av~~f~~~l~ 122 (301)
..+.|++++||-.. .=+..+++.|.+.|+++..+- ... +...+.+... +..++ =+++..+++.+++.+.
T Consensus 3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~----~~~---~~~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 74 (255)
T PRK06463 3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLY----NSA---ENEAKELREK-GVFTIKCDVGNRDQVKKSKEVVE 74 (255)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe----CCc---HHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHH
Confidence 35678999999764 355788999999999876321 111 1111222121 22222 2478888888887665
Q ss_pred H
Q 022176 123 E 123 (301)
Q Consensus 123 ~ 123 (301)
+
T Consensus 75 ~ 75 (255)
T PRK06463 75 K 75 (255)
T ss_pred H
Confidence 4
No 487
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=34.16 E-value=3.4e+02 Score=24.13 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=77.3
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHH--HHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGK--ILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e--~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
+..++++++ |+.+.+.....+.+ ..++.|.++.. .-+++.......+.+...++. |+.+..+.-+-.
T Consensus 22 gIe~~a~~~------Gy~l~l~~t~~~~~~e~~i~~l~~~~v--DGiI~~s~~~~~~~l~~~~~~-~iPvV~~~~~~~-- 90 (279)
T PF00532_consen 22 GIEQEAREH------GYQLLLCNTGDDEEKEEYIELLLQRRV--DGIILASSENDDEELRRLIKS-GIPVVLIDRYID-- 90 (279)
T ss_dssp HHHHHHHHT------TCEEEEEEETTTHHHHHHHHHHHHTTS--SEEEEESSSCTCHHHHHHHHT-TSEEEEESS-SC--
T ss_pred HHHHHHHHc------CCEEEEecCCCchHHHHHHHHHHhcCC--CEEEEecccCChHHHHHHHHc-CCCEEEEEeccC--
Confidence 356778888 99886655443333 34444544432 346666444444666666665 777644443311
Q ss_pred CCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCce-EEEECH---------H---HHHHHHHcCCC---eeEe
Q 022176 215 VHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNS-VACIGE---------T---TASAAKRLGLK---NVYY 278 (301)
Q Consensus 215 ~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~-i~aIG~---------~---Ta~al~~~G~~---~~~v 278 (301)
. ...+++|.+---.+.+...+.+-+.+ +.+ ++.+|. + =.++++++|+. ..+.
T Consensus 91 -~---------~~~~~~V~~D~~~a~~~a~~~Li~~G--h~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~ 158 (279)
T PF00532_consen 91 -N---------PEGVPSVYIDNYEAGYEATEYLIKKG--HRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIF 158 (279)
T ss_dssp -T---------TCTSCEEEEEHHHHHHHHHHHHHHTT--CCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred -C---------cccCCEEEEcchHHHHHHHHHHHhcc--cCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCccccc
Confidence 1 02467777777777766666665544 333 343332 1 12456667772 2233
Q ss_pred cCCCCHHHHHHHHHHHHHcc
Q 022176 279 PTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 279 ~~~ps~e~ll~ai~~~~~~~ 298 (301)
....+.++-.+++.+.++.+
T Consensus 159 ~~~~~~~~g~~~~~~ll~~~ 178 (279)
T PF00532_consen 159 EGDFDYESGYEAARELLESH 178 (279)
T ss_dssp ESSSSHHHHHHHHHHHHHTS
T ss_pred ccCCCHHHHHHHHHHHHhhC
Confidence 45567777777777777665
No 488
>PLN02778 3,5-epimerase/4-reductase
Probab=34.11 E-value=1.6e+02 Score=26.58 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=37.1
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC
Q 022176 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (301)
Q Consensus 49 ~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS 110 (301)
.+|+||||-..+ =+..+++.|.++|.+|... .....+.+.+...+.. .+.|.||-..
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~----~~~~~~~~~v~~~l~~-~~~D~ViH~A 65 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYG----SGRLENRASLEADIDA-VKPTHVFNAA 65 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEe----cCccCCHHHHHHHHHh-cCCCEEEECC
Confidence 357899998765 4568899999999988532 1122344455555533 3678888433
No 489
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=34.08 E-value=1.9e+02 Score=25.66 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=46.9
Q ss_pred HHHHHHhccCC-CCCCEEEEEcCCcC-----hhHHHHHHHhCCC-eeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEECh
Q 022176 165 KILASELPKNG-KKKCTVLYPASAKA-----SNEIEEGLSNRGF-EVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (301)
Q Consensus 165 e~L~~~l~~~~-~~~~~vLi~rg~~~-----~~~L~~~L~~~G~-~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~ 237 (301)
..+.+.+.+.- ..+.||+|+....+ .+...+.|+..|+ .|..+.++.+... ..++..+.+...|.|+|+-.
T Consensus 14 ~~i~~~~~~lag~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a--~~~~~~~~l~~ad~I~~~GG 91 (250)
T TIGR02069 14 REILREFVSRAGGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDA--SDENAIALLSNATGIFFTGG 91 (250)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHc--cCHHHHHHHhhCCEEEEeCC
Confidence 33555554332 13347887653322 2356778889998 4777777654322 12234445678999999999
Q ss_pred HHHHHH
Q 022176 238 SAVRSW 243 (301)
Q Consensus 238 sav~~~ 243 (301)
.+.+..
T Consensus 92 nq~~l~ 97 (250)
T TIGR02069 92 DQLRIT 97 (250)
T ss_pred CHHHHH
Confidence 987654
No 490
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=33.96 E-value=1.2e+02 Score=28.96 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=37.5
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT 109 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift 109 (301)
.|..|++..|.- ..+...++..|+++..+|+-. ...|.+.+++.+.. +.+.|+++
T Consensus 164 pgd~Vlv~~P~y--~~~~~~~~~~g~~~~~v~~~~--~g~~~~~l~~~~~~--~~k~i~~~ 218 (431)
T PRK15481 164 PGDSVAVEDPCF--LSSINMLRYAGFSASPVSVDA--EGMQPEKLERALAQ--GARAVILT 218 (431)
T ss_pred CCCEEEEeCCCc--HHHHHHHHHcCCeEEeeccCC--CCCCHHHHHHHHhc--CCCEEEEC
Confidence 477888888763 556677788999999999722 12345666666632 46677776
No 491
>PTZ00066 pyruvate kinase; Provisional
Probab=33.93 E-value=1.6e+02 Score=29.29 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=46.6
Q ss_pred CEEEEE-ChHHHHHHHHhhhcccCCCceEEE--ECHHHHHHHHHc-CCCeeEecCCCCHHHHHHHHHHHHHccC
Q 022176 230 PVVAVA-SPSAVRSWVNLISDTEQWSNSVAC--IGETTASAAKRL-GLKNVYYPTHPGLEGWVDSILEALREHG 299 (301)
Q Consensus 230 d~I~ft-S~sav~~~~~~l~~~~~~~~~i~a--IG~~Ta~al~~~-G~~~~~v~~~ps~e~ll~ai~~~~~~~~ 299 (301)
-+|+|| |..+++.+.++-+ .+++++ -.+.+++.|.-. |+.+.+.....+.+.+++...+++++.+
T Consensus 414 aIv~~T~SG~TAr~iSk~RP-----~~pIia~t~~~~~~R~L~L~wGV~p~~~~~~~~~~~~i~~a~~~~~~~g 482 (513)
T PTZ00066 414 LIIALTETGNTARLISKYRP-----SCTILALSASPSVVKSLSVARGVTTYVVNSFQGTDVVIRNAIALAKERG 482 (513)
T ss_pred EEEEECCCcHHHHHHHhhCC-----CCCEEEECCCHHHHHHhhcccCcEEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 367777 7788887766543 345554 477888888764 9888776666788889988888877654
No 492
>PRK13566 anthranilate synthase; Provisional
Probab=33.85 E-value=2.4e+02 Score=29.37 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=57.4
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe-ChHH-----HHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-SPEA-----GSVFL 118 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift-S~~a-----v~~f~ 118 (301)
.+-.|++|++..-.. ....+.+.|++.|+++..++.-... + .+ ....+|.||++ ++.. ...++
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-----~----~~-~~~~~DgVVLsgGpgsp~d~~~~~lI 591 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-----E----ML-DRVNPDLVVLSPGPGRPSDFDCKATI 591 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-----h----Hh-hhcCCCEEEECCCCCChhhCCcHHHH
Confidence 567889999987653 5568899999999998766654311 1 12 22478998885 3322 33344
Q ss_pred HHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceee
Q 022176 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF 157 (301)
Q Consensus 119 ~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~ 157 (301)
+.+.+ .++|++.|.-+- +.|-.++ |-++.-
T Consensus 592 ~~a~~---~~iPILGIClG~-QlLa~al-----GG~V~~ 621 (720)
T PRK13566 592 DAALA---RNLPIFGVCLGL-QAIVEAF-----GGELGQ 621 (720)
T ss_pred HHHHH---CCCcEEEEehhH-HHHHHHc-----CCEEEE
Confidence 43333 367887766663 4444443 766543
No 493
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=33.82 E-value=4.3e+02 Score=25.21 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=74.9
Q ss_pred CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEchh-
Q 022176 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGAG- 137 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-~~~~~~i~avG~~- 137 (301)
.+-.++.+.|++.|+++...- +. ...+++ +.+..+...-+..++.....+.+.+++. +.+-..+--+|..
T Consensus 175 ~d~~ei~~lL~~~Gl~v~~~~-----~~--~~t~~e-i~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~~~~~~G~~~ 246 (415)
T cd01977 175 GDTEVLQKYFERMGIQVLSTF-----TG--NGTYDD-LRWMHRAKLNVVNCARSAGYIANELKKRYGIPRLDVDGFGFEY 246 (415)
T ss_pred ccHHHHHHHHHHcCCeEEEEE-----CC--CCCHHH-HHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeEEeccCCHHH
Confidence 345689999999999996211 11 122222 3466777776666665555566767653 4443332235654
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHHH---HHHhcc--CCCCCCEEEEEcCCcChhHHHHHHH-hCCCeeEEEeee
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKIL---ASELPK--NGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTY 210 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L---~~~l~~--~~~~~~~vLi~rg~~~~~~L~~~L~-~~G~~v~~~~vY 210 (301)
|.+.|++.. ...|..... +..-.+.. ...|.. ....|+++.+..+....-.|...|. +.|.+|..+..+
T Consensus 247 t~~~l~~la--~~~g~~~~~--e~~i~~~~~~~r~~l~~~~~~l~Gk~vai~~~~~~~~~la~~l~~elG~~v~~i~~~ 321 (415)
T cd01977 247 CAESLRKIG--AFFGIEDRA--EAVIAEEMAKWKPELDWYKERLKGKKVCIWTGGPKLWHWTKVIEDELGMQVVAMSSK 321 (415)
T ss_pred HHHHHHHHH--HHhCcchhH--HHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHHHhcCCEEEEEEEE
Confidence 556665541 111433210 00001111 111211 1126889988776666677888896 899999765443
No 494
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=33.81 E-value=2.8e+02 Score=23.69 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=30.1
Q ss_pred EEEEEC--hHHHHHHHHhhhcccCCCceEEEECH----HHHHHHHHcCCCeeE
Q 022176 231 VVAVAS--PSAVRSWVNLISDTEQWSNSVACIGE----TTASAAKRLGLKNVY 277 (301)
Q Consensus 231 ~I~ftS--~sav~~~~~~l~~~~~~~~~i~aIG~----~Ta~al~~~G~~~~~ 277 (301)
+++|.| .+.++.+++.+.........++++.. ...+.+++.|+....
T Consensus 4 i~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~ 56 (200)
T PRK05647 4 IVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFV 56 (200)
T ss_pred EEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEE
Confidence 678888 88899998888654321112223333 256678888998654
No 495
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=33.77 E-value=2.4e+02 Score=26.81 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=48.1
Q ss_pred CCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeee-eCCCCcHHHHHHc-CCCCEEEEECh-
Q 022176 161 KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE-PVHHVDQTVLKQA-LSIPVVAVASP- 237 (301)
Q Consensus 161 ~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~-~~~~~~~~~~~~~-~~~d~I~ftS~- 237 (301)
....++|...+......|..||++.+.-. ......+-.|+.+..++++... .-..+.+.+.+.+ .+-.+|++.||
T Consensus 96 ~Ga~~al~~~~~a~~~pGDeVlip~P~Y~--~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~ 173 (393)
T COG0436 96 AGAKEALFLAFLALLNPGDEVLIPDPGYP--SYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPN 173 (393)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCCc--CHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCC
Confidence 34566666555555556677888777543 3445566677777777765432 1112222222222 23456666544
Q ss_pred ---------HHHHHHHHhhhcc
Q 022176 238 ---------SAVRSWVNLISDT 250 (301)
Q Consensus 238 ---------sav~~~~~~l~~~ 250 (301)
..++.+.+...++
T Consensus 174 NPTGav~~~~~l~~i~~~a~~~ 195 (393)
T COG0436 174 NPTGAVYSKEELKAIVELAREH 195 (393)
T ss_pred CCcCcCCCHHHHHHHHHHHHHc
Confidence 4566666666554
No 496
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=33.72 E-value=2e+02 Score=24.54 Aligned_cols=75 Identities=16% Similarity=0.069 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEchh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG~~ 137 (301)
..+.+.++++|........+......+ .+.+.+.+..-...|.|+..+-.....+++.+.+.+. +++.+++.+..
T Consensus 140 ~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~~i~iig~d~~ 219 (268)
T cd06271 140 AGYRRALAEAGLPLDPALIVSGDMTEEGGYAAAAELLALPDRPTAIVCSSELMALGVLAALAEAGLRPGRDVSVVGFDDS 219 (268)
T ss_pred HHHHHHHHHhCCCCCCceEEeCCCChHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEecCc
Confidence 344566777776542211222111111 1234444433345788888887666667777777764 36677777654
No 497
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=33.69 E-value=62 Score=31.17 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=40.9
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeC----CCc-----hHHHHHHhcCCC---ccEEEEeChH
Q 022176 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG----PDT-----DRLSSVLNADTI---FDWIIITSPE 112 (301)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~----~d~-----~~l~~~l~~l~~---~d~IiftS~~ 112 (301)
--.|.+||+.|...++- ...|.-.|+.+++++..+-... -+. +.+++.+++... +..+++|||+
T Consensus 103 ~~~gd~VLv~RN~HkSv--~~alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT 178 (417)
T PF01276_consen 103 CRPGDKVLVDRNCHKSV--YNALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT 178 (417)
T ss_dssp TTTTCEEEEETT--HHH--HHHHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-
T ss_pred cCCCCEEEEcCCcHHHH--HHHHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC
Confidence 35689999999887543 3466667999999888632211 122 567777765433 5669999996
No 498
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.65 E-value=3.3e+02 Score=23.84 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=62.3
Q ss_pred cHHHHHHHhccCCCCCCEEEEE--cCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCC----CcHH---HHHHc--CCCCE
Q 022176 163 TGKILASELPKNGKKKCTVLYP--ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH----VDQT---VLKQA--LSIPV 231 (301)
Q Consensus 163 ~~e~L~~~l~~~~~~~~~vLi~--rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~----~~~~---~~~~~--~~~d~ 231 (301)
++..+++.|..... +||.++ =-+..+....+.|+++|++|..+....-...-. .+.. +.++. .+.|+
T Consensus 105 ts~Avv~aL~al~a--~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~Da 182 (238)
T COG3473 105 TSTAVVEALNALGA--QRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADA 182 (238)
T ss_pred chHHHHHHHHhhCc--ceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCe
Confidence 35556677766543 455544 445567788999999999998877765432221 1111 22222 57887
Q ss_pred EEEEChHHHHHHHHhhhcccCCCceEEEECHHH-HHHHHHcCCCe
Q 022176 232 VAVASPSAVRSWVNLISDTEQWSNSVACIGETT-ASAAKRLGLKN 275 (301)
Q Consensus 232 I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~T-a~al~~~G~~~ 275 (301)
|.+. --.++.|--.-+-....+.++++-...| -.+|+..|.+-
T Consensus 183 iFiS-CTnlRt~eii~~lE~~~G~PVvsSN~AT~W~~Lr~~g~~~ 226 (238)
T COG3473 183 IFIS-CTNLRTFEIIEKLERDTGVPVVSSNQATLWMALRLIGLRE 226 (238)
T ss_pred EEEE-eeccccHHHHHHHHHHhCCceeeccHHHHHHHHHHcCCcc
Confidence 6554 5555555322111112356777655544 45677778763
No 499
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=33.64 E-value=2.5e+02 Score=22.57 Aligned_cols=102 Identities=16% Similarity=0.172 Sum_probs=61.9
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcH---HHHHHc--CCCCEEEEEChHHHHHHHHhhhcccCCCc-eEEEECHH
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPVVAVASPSAVRSWVNLISDTEQWSN-SVACIGET 263 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~~--~~~d~I~ftS~sav~~~~~~l~~~~~~~~-~i~aIG~~ 263 (301)
.+.|.+.|++.|.+|..+-.|...+.+ .++ .+.+.. ++.|.-++...+.+-..+..-+- +.+ ...|-.+.
T Consensus 14 K~~i~~~L~~~g~eV~D~G~~~~~~~d-y~~~a~~va~~V~~~~~d~GIliCgtGiG~~iaANK~---~GIrAa~~~d~~ 89 (140)
T PF02502_consen 14 KEAIKEYLEEKGYEVIDFGTYSEDSVD-YPDFAEKVAEAVASGEADRGILICGTGIGMSIAANKV---PGIRAALCSDPY 89 (140)
T ss_dssp HHHHHHHHHHTTEEEEEESESSTST---HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHHTS---TT--EEE-SSHH
T ss_pred HHHHHHHHHHCCCEEEEeCCCCCCCCC-HHHHHHHHHHHHHcccCCeEEEEcCCChhhhhHhhcC---CCEEEEeeCCHH
Confidence 467888999999999999988765222 222 122222 56665444444444444433322 234 34577899
Q ss_pred HHHHHHHc-CCCeeEecCCCCHHHHHHHHHHHH
Q 022176 264 TASAAKRL-GLKNVYYPTHPGLEGWVDSILEAL 295 (301)
Q Consensus 264 Ta~al~~~-G~~~~~v~~~ps~e~ll~ai~~~~ 295 (301)
+|+..++. .-++.....+...+.+++.|.+.|
T Consensus 90 ~A~~ar~hNdaNVL~lG~~~~~~~~a~~i~~~~ 122 (140)
T PF02502_consen 90 SAKMAREHNDANVLCLGARVIGEELAKEIVDAF 122 (140)
T ss_dssp HHHHHHHTT--SEEEEETTTSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEechhhccHHHHHHHHHHH
Confidence 99999885 555666788888888888777654
No 500
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=33.64 E-value=1.5e+02 Score=23.80 Aligned_cols=90 Identities=21% Similarity=0.131 Sum_probs=54.7
Q ss_pred CcHHHHHHHhccCC--CCCCEEEEE-cCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChH
Q 022176 162 ATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 162 ~~~e~L~~~l~~~~--~~~~~vLi~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
-+.+++.+.|.... ..|++++++ |+......|...|.+.|+.|+.+.... . . +.+...+.|+|+-..+.
T Consensus 10 ~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t----~-~---l~~~v~~ADIVvsAtg~ 81 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT----I-Q---LQSKVHDADVVVVGSPK 81 (140)
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC----c-C---HHHHHhhCCEEEEecCC
Confidence 35677766665543 367887654 555567889999999999886655321 1 1 12234678988887776
Q ss_pred HHHHHHH-hhhcccCCCceEEEECHHH
Q 022176 239 AVRSWVN-LISDTEQWSNSVACIGETT 264 (301)
Q Consensus 239 av~~~~~-~l~~~~~~~~~i~aIG~~T 264 (301)
. ..+-. +++ .+..++-+|..-
T Consensus 82 ~-~~i~~~~ik----pGa~Vidvg~~~ 103 (140)
T cd05212 82 P-EKVPTEWIK----PGATVINCSPTK 103 (140)
T ss_pred C-CccCHHHcC----CCCEEEEcCCCc
Confidence 6 33211 121 255666666543
Done!